0s autopkgtest [12:18:00]: starting date and time: 2024-11-13 12:18:00+0000 1s autopkgtest [12:18:01]: git checkout: 6f3be7a8 Fix armhf LXD image generation for plucky 1s autopkgtest [12:18:01]: host juju-7f2275-prod-proposed-migration-environment-15; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.evj9q3dx/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:python3-defaults,src:python3-stdlib-extensions --apt-upgrade picopore --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 '--env=ADT_TEST_TRIGGERS=python3-defaults/3.12.7-1 python3-stdlib-extensions/3.12.7-1' -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest-s390x --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-15@bos03-s390x-15.secgroup --name adt-plucky-s390x-picopore-20241113-121800-juju-7f2275-prod-proposed-migration-environment-15-cea203df-9feb-48be-8cf8-efa2bd3efc76 --image adt/ubuntu-plucky-s390x-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-15 --net-id=net_prod-proposed-migration-s390x -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,keyserver.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/ 106s autopkgtest [12:19:46]: testbed dpkg architecture: s390x 107s autopkgtest [12:19:47]: testbed apt version: 2.9.8 107s autopkgtest [12:19:47]: @@@@@@@@@@@@@@@@@@@@ test bed setup 107s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease [73.9 kB] 108s Get:2 http://ftpmaster.internal/ubuntu plucky-proposed/restricted Sources [7016 B] 108s Get:3 http://ftpmaster.internal/ubuntu plucky-proposed/universe Sources [849 kB] 108s Get:4 http://ftpmaster.internal/ubuntu plucky-proposed/main Sources [76.4 kB] 108s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse Sources [15.3 kB] 108s Get:6 http://ftpmaster.internal/ubuntu plucky-proposed/main s390x Packages [85.8 kB] 108s Get:7 http://ftpmaster.internal/ubuntu plucky-proposed/universe s390x Packages [565 kB] 108s Get:8 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse s390x Packages [16.6 kB] 108s Fetched 1689 kB in 1s (2016 kB/s) 108s Reading package lists... 110s Reading package lists... 110s Building dependency tree... 110s Reading state information... 110s Calculating upgrade... 111s The following NEW packages will be installed: 111s python3.13-gdbm 111s The following packages will be upgraded: 111s libgpgme11t64 libpython3-stdlib python3 python3-gdbm python3-minimal 111s 5 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. 111s Need to get 252 kB of archives. 111s After this operation, 98.3 kB of additional disk space will be used. 111s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed/main s390x python3-minimal s390x 3.12.7-1 [27.4 kB] 111s Get:2 http://ftpmaster.internal/ubuntu plucky-proposed/main s390x python3 s390x 3.12.7-1 [24.0 kB] 111s Get:3 http://ftpmaster.internal/ubuntu plucky-proposed/main s390x libpython3-stdlib s390x 3.12.7-1 [10.0 kB] 111s Get:4 http://ftpmaster.internal/ubuntu plucky/main s390x python3.13-gdbm s390x 3.13.0-2 [31.0 kB] 111s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/main s390x python3-gdbm s390x 3.12.7-1 [8642 B] 111s Get:6 http://ftpmaster.internal/ubuntu plucky/main s390x libgpgme11t64 s390x 1.23.2-5ubuntu4 [151 kB] 111s Fetched 252 kB in 0s (597 kB/s) 111s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 55510 files and directories currently installed.) 111s Preparing to unpack .../python3-minimal_3.12.7-1_s390x.deb ... 111s Unpacking python3-minimal (3.12.7-1) over (3.12.6-0ubuntu1) ... 112s Setting up python3-minimal (3.12.7-1) ... 112s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 55510 files and directories currently installed.) 112s Preparing to unpack .../python3_3.12.7-1_s390x.deb ... 112s Unpacking python3 (3.12.7-1) over (3.12.6-0ubuntu1) ... 112s Preparing to unpack .../libpython3-stdlib_3.12.7-1_s390x.deb ... 112s Unpacking libpython3-stdlib:s390x (3.12.7-1) over (3.12.6-0ubuntu1) ... 112s Selecting previously unselected package python3.13-gdbm. 112s Preparing to unpack .../python3.13-gdbm_3.13.0-2_s390x.deb ... 112s Unpacking python3.13-gdbm (3.13.0-2) ... 112s Preparing to unpack .../python3-gdbm_3.12.7-1_s390x.deb ... 112s Unpacking python3-gdbm:s390x (3.12.7-1) over (3.12.6-1ubuntu1) ... 112s Preparing to unpack .../libgpgme11t64_1.23.2-5ubuntu4_s390x.deb ... 112s Unpacking libgpgme11t64:s390x (1.23.2-5ubuntu4) over (1.18.0-4.1ubuntu4) ... 112s Setting up libgpgme11t64:s390x (1.23.2-5ubuntu4) ... 112s Setting up python3.13-gdbm (3.13.0-2) ... 112s Setting up libpython3-stdlib:s390x (3.12.7-1) ... 112s Setting up python3 (3.12.7-1) ... 112s Setting up python3-gdbm:s390x (3.12.7-1) ... 112s Processing triggers for man-db (2.12.1-3) ... 112s Processing triggers for libc-bin (2.40-1ubuntu3) ... 113s Reading package lists... 113s Building dependency tree... 113s Reading state information... 113s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 113s Hit:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease 113s Hit:2 http://ftpmaster.internal/ubuntu plucky InRelease 114s Hit:3 http://ftpmaster.internal/ubuntu plucky-updates InRelease 114s Hit:4 http://ftpmaster.internal/ubuntu plucky-security InRelease 114s Reading package lists... 115s Reading package lists... 115s Building dependency tree... 115s Reading state information... 115s Calculating upgrade... 115s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 115s Reading package lists... 115s Building dependency tree... 115s Reading state information... 115s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 118s autopkgtest [12:19:58]: testbed running kernel: Linux 6.11.0-8-generic #8-Ubuntu SMP Mon Sep 16 12:49:35 UTC 2024 118s autopkgtest [12:19:58]: @@@@@@@@@@@@@@@@@@@@ apt-source picopore 121s Get:1 http://ftpmaster.internal/ubuntu plucky/universe picopore 1.2.0-3 (dsc) [2191 B] 121s Get:2 http://ftpmaster.internal/ubuntu plucky/universe picopore 1.2.0-3 (tar) [6276 kB] 121s Get:3 http://ftpmaster.internal/ubuntu plucky/universe picopore 1.2.0-3 (diff) [5332 B] 121s gpgv: Signature made Fri Dec 15 20:40:34 2023 UTC 121s gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 121s gpgv: issuer "tille@debian.org" 121s gpgv: Can't check signature: No public key 121s dpkg-source: warning: cannot verify inline signature for ./picopore_1.2.0-3.dsc: no acceptable signature found 121s autopkgtest [12:20:01]: testing package picopore version 1.2.0-3 122s autopkgtest [12:20:02]: build not needed 122s autopkgtest [12:20:02]: test run-unit-test: preparing testbed 124s Reading package lists... 124s Building dependency tree... 124s Reading state information... 124s Starting pkgProblemResolver with broken count: 0 124s Starting 2 pkgProblemResolver with broken count: 0 124s Done 124s The following additional packages will be installed: 124s hdf5-tools libaec0 libblas3 libgfortran5 libhdf5-103-1t64 libhdf5-hl-100t64 124s libjs-jquery libjs-sphinxdoc libjs-underscore liblapack3 liblzf1 124s libpython3.13-minimal libpython3.13-stdlib libsz2 picopore python3-all 124s python3-h5py python3-h5py-serial python3-numpy python3-picopore 124s python3-watchdog python3.13 python3.13-minimal 124s Suggested packages: 124s python-h5py-doc gcc gfortran python-numpy-doc python3-dev python3-pytest 124s python3.13-venv python3.13-doc binfmt-support 124s Recommended packages: 124s javascript-common 124s The following NEW packages will be installed: 124s autopkgtest-satdep hdf5-tools libaec0 libblas3 libgfortran5 libhdf5-103-1t64 124s libhdf5-hl-100t64 libjs-jquery libjs-sphinxdoc libjs-underscore liblapack3 124s liblzf1 libpython3.13-minimal libpython3.13-stdlib libsz2 picopore 124s python3-all python3-h5py python3-h5py-serial python3-numpy python3-picopore 124s python3-watchdog python3.13 python3.13-minimal 124s 0 upgraded, 24 newly installed, 0 to remove and 0 not upgraded. 124s Need to get 17.5 MB/17.5 MB of archives. 124s After this operation, 68.1 MB of additional disk space will be used. 124s Get:1 /tmp/autopkgtest.zHnPqD/1-autopkgtest-satdep.deb autopkgtest-satdep s390x 0 [720 B] 124s Get:2 http://ftpmaster.internal/ubuntu plucky/main s390x libpython3.13-minimal s390x 3.13.0-2 [877 kB] 125s Get:3 http://ftpmaster.internal/ubuntu plucky/main s390x python3.13-minimal s390x 3.13.0-2 [2172 kB] 126s Get:4 http://ftpmaster.internal/ubuntu plucky/universe s390x libaec0 s390x 1.1.3-1 [25.7 kB] 126s Get:5 http://ftpmaster.internal/ubuntu plucky/universe s390x libsz2 s390x 1.1.3-1 [5442 B] 126s Get:6 http://ftpmaster.internal/ubuntu plucky/universe s390x libhdf5-103-1t64 s390x 1.10.10+repack-4ubuntu3 [1426 kB] 126s Get:7 http://ftpmaster.internal/ubuntu plucky/universe s390x hdf5-tools s390x 1.10.10+repack-4ubuntu3 [354 kB] 126s Get:8 http://ftpmaster.internal/ubuntu plucky/main s390x libblas3 s390x 3.12.0-3build2 [238 kB] 126s Get:9 http://ftpmaster.internal/ubuntu plucky/main s390x libgfortran5 s390x 14.2.0-8ubuntu1 [587 kB] 126s Get:10 http://ftpmaster.internal/ubuntu plucky/universe s390x libhdf5-hl-100t64 s390x 1.10.10+repack-4ubuntu3 [58.0 kB] 126s Get:11 http://ftpmaster.internal/ubuntu plucky/main s390x libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [328 kB] 126s Get:12 http://ftpmaster.internal/ubuntu plucky/main s390x libjs-underscore all 1.13.4~dfsg+~1.11.4-3 [118 kB] 126s Get:13 http://ftpmaster.internal/ubuntu plucky/main s390x libjs-sphinxdoc all 7.4.7-4 [158 kB] 126s Get:14 http://ftpmaster.internal/ubuntu plucky/main s390x liblapack3 s390x 3.12.0-3build2 [2953 kB] 127s Get:15 http://ftpmaster.internal/ubuntu plucky/universe s390x liblzf1 s390x 3.6-4 [7020 B] 127s Get:16 http://ftpmaster.internal/ubuntu plucky/main s390x libpython3.13-stdlib s390x 3.13.0-2 [2086 kB] 127s Get:17 http://ftpmaster.internal/ubuntu plucky/main s390x python3-numpy s390x 1:1.26.4+ds-11build1 [4113 kB] 127s Get:18 http://ftpmaster.internal/ubuntu plucky/universe s390x python3-h5py-serial s390x 3.11.0-5ubuntu1 [1151 kB] 127s Get:19 http://ftpmaster.internal/ubuntu plucky/universe s390x python3-h5py all 3.11.0-5ubuntu1 [7974 B] 127s Get:20 http://ftpmaster.internal/ubuntu plucky/universe s390x python3-watchdog all 5.0.0-1 [125 kB] 127s Get:21 http://ftpmaster.internal/ubuntu plucky/universe s390x python3-picopore all 1.2.0-3 [15.6 kB] 127s Get:22 http://ftpmaster.internal/ubuntu plucky/universe s390x picopore all 1.2.0-3 [9878 B] 127s Get:23 http://ftpmaster.internal/ubuntu plucky/main s390x python3.13 s390x 3.13.0-2 [719 kB] 127s Get:24 http://ftpmaster.internal/ubuntu plucky-proposed/main s390x python3-all s390x 3.12.7-1 [890 B] 128s Fetched 17.5 MB in 3s (5401 kB/s) 128s Selecting previously unselected package libpython3.13-minimal:s390x. 128s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 55517 files and directories currently installed.) 128s Preparing to unpack .../00-libpython3.13-minimal_3.13.0-2_s390x.deb ... 128s Unpacking libpython3.13-minimal:s390x (3.13.0-2) ... 128s Selecting previously unselected package python3.13-minimal. 128s Preparing to unpack .../01-python3.13-minimal_3.13.0-2_s390x.deb ... 128s Unpacking python3.13-minimal (3.13.0-2) ... 128s Selecting previously unselected package libaec0:s390x. 128s Preparing to unpack .../02-libaec0_1.1.3-1_s390x.deb ... 128s Unpacking libaec0:s390x (1.1.3-1) ... 128s Selecting previously unselected package libsz2:s390x. 128s Preparing to unpack .../03-libsz2_1.1.3-1_s390x.deb ... 128s Unpacking libsz2:s390x (1.1.3-1) ... 128s Selecting previously unselected package libhdf5-103-1t64:s390x. 128s Preparing to unpack .../04-libhdf5-103-1t64_1.10.10+repack-4ubuntu3_s390x.deb ... 128s Unpacking libhdf5-103-1t64:s390x (1.10.10+repack-4ubuntu3) ... 128s Selecting previously unselected package hdf5-tools. 128s Preparing to unpack .../05-hdf5-tools_1.10.10+repack-4ubuntu3_s390x.deb ... 128s Unpacking hdf5-tools (1.10.10+repack-4ubuntu3) ... 128s Selecting previously unselected package libblas3:s390x. 128s Preparing to unpack .../06-libblas3_3.12.0-3build2_s390x.deb ... 128s Unpacking libblas3:s390x (3.12.0-3build2) ... 128s Selecting previously unselected package libgfortran5:s390x. 128s Preparing to unpack .../07-libgfortran5_14.2.0-8ubuntu1_s390x.deb ... 128s Unpacking libgfortran5:s390x (14.2.0-8ubuntu1) ... 128s Selecting previously unselected package libhdf5-hl-100t64:s390x. 128s Preparing to unpack .../08-libhdf5-hl-100t64_1.10.10+repack-4ubuntu3_s390x.deb ... 128s Unpacking libhdf5-hl-100t64:s390x (1.10.10+repack-4ubuntu3) ... 128s Selecting previously unselected package libjs-jquery. 128s Preparing to unpack .../09-libjs-jquery_3.6.1+dfsg+~3.5.14-1_all.deb ... 128s Unpacking libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... 128s Selecting previously unselected package libjs-underscore. 128s Preparing to unpack .../10-libjs-underscore_1.13.4~dfsg+~1.11.4-3_all.deb ... 128s Unpacking libjs-underscore (1.13.4~dfsg+~1.11.4-3) ... 128s Selecting previously unselected package libjs-sphinxdoc. 128s Preparing to unpack .../11-libjs-sphinxdoc_7.4.7-4_all.deb ... 128s Unpacking libjs-sphinxdoc (7.4.7-4) ... 128s Selecting previously unselected package liblapack3:s390x. 128s Preparing to unpack .../12-liblapack3_3.12.0-3build2_s390x.deb ... 128s Unpacking liblapack3:s390x (3.12.0-3build2) ... 128s Selecting previously unselected package liblzf1:s390x. 128s Preparing to unpack .../13-liblzf1_3.6-4_s390x.deb ... 128s Unpacking liblzf1:s390x (3.6-4) ... 128s Selecting previously unselected package libpython3.13-stdlib:s390x. 128s Preparing to unpack .../14-libpython3.13-stdlib_3.13.0-2_s390x.deb ... 128s Unpacking libpython3.13-stdlib:s390x (3.13.0-2) ... 128s Selecting previously unselected package python3-numpy. 128s Preparing to unpack .../15-python3-numpy_1%3a1.26.4+ds-11build1_s390x.deb ... 128s Unpacking python3-numpy (1:1.26.4+ds-11build1) ... 128s Selecting previously unselected package python3-h5py-serial. 128s Preparing to unpack .../16-python3-h5py-serial_3.11.0-5ubuntu1_s390x.deb ... 128s Unpacking python3-h5py-serial (3.11.0-5ubuntu1) ... 128s Selecting previously unselected package python3-h5py. 128s Preparing to unpack .../17-python3-h5py_3.11.0-5ubuntu1_all.deb ... 128s Unpacking python3-h5py (3.11.0-5ubuntu1) ... 128s Selecting previously unselected package python3-watchdog. 128s Preparing to unpack .../18-python3-watchdog_5.0.0-1_all.deb ... 128s Unpacking python3-watchdog (5.0.0-1) ... 128s Selecting previously unselected package python3-picopore. 128s Preparing to unpack .../19-python3-picopore_1.2.0-3_all.deb ... 128s Unpacking python3-picopore (1.2.0-3) ... 128s Selecting previously unselected package picopore. 128s Preparing to unpack .../20-picopore_1.2.0-3_all.deb ... 128s Unpacking picopore (1.2.0-3) ... 128s Selecting previously unselected package python3.13. 128s Preparing to unpack .../21-python3.13_3.13.0-2_s390x.deb ... 128s Unpacking python3.13 (3.13.0-2) ... 128s Selecting previously unselected package python3-all. 128s Preparing to unpack .../22-python3-all_3.12.7-1_s390x.deb ... 128s Unpacking python3-all (3.12.7-1) ... 128s Selecting previously unselected package autopkgtest-satdep. 128s Preparing to unpack .../23-1-autopkgtest-satdep.deb ... 128s Unpacking autopkgtest-satdep (0) ... 128s Setting up libaec0:s390x (1.1.3-1) ... 128s Setting up libpython3.13-minimal:s390x (3.13.0-2) ... 128s Setting up libblas3:s390x (3.12.0-3build2) ... 128s update-alternatives: using /usr/lib/s390x-linux-gnu/blas/libblas.so.3 to provide /usr/lib/s390x-linux-gnu/libblas.so.3 (libblas.so.3-s390x-linux-gnu) in auto mode 128s Setting up liblzf1:s390x (3.6-4) ... 128s Setting up libgfortran5:s390x (14.2.0-8ubuntu1) ... 128s Setting up python3.13-minimal (3.13.0-2) ... 129s Setting up libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... 130s Setting up libpython3.13-stdlib:s390x (3.13.0-2) ... 130s Setting up libsz2:s390x (1.1.3-1) ... 130s Setting up libjs-underscore (1.13.4~dfsg+~1.11.4-3) ... 130s Setting up liblapack3:s390x (3.12.0-3build2) ... 130s update-alternatives: using /usr/lib/s390x-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/s390x-linux-gnu/liblapack.so.3 (liblapack.so.3-s390x-linux-gnu) in auto mode 130s Setting up python3.13 (3.13.0-2) ... 131s Setting up python3-all (3.12.7-1) ... 131s Setting up python3-numpy (1:1.26.4+ds-11build1) ... 135s Setting up libjs-sphinxdoc (7.4.7-4) ... 135s Setting up libhdf5-103-1t64:s390x (1.10.10+repack-4ubuntu3) ... 135s Setting up libhdf5-hl-100t64:s390x (1.10.10+repack-4ubuntu3) ... 136s Setting up python3-watchdog (5.0.0-1) ... 136s Setting up python3-h5py-serial (3.11.0-5ubuntu1) ... 136s Setting up hdf5-tools (1.10.10+repack-4ubuntu3) ... 136s Setting up python3-h5py (3.11.0-5ubuntu1) ... 136s Setting up python3-picopore (1.2.0-3) ... 136s Setting up picopore (1.2.0-3) ... 136s Setting up autopkgtest-satdep (0) ... 136s Processing triggers for systemd (256.5-2ubuntu4) ... 136s Processing triggers for man-db (2.12.1-3) ... 137s Processing triggers for libc-bin (2.40-1ubuntu3) ... 139s (Reading database ... 57512 files and directories currently installed.) 139s Removing autopkgtest-satdep (0) ... 140s autopkgtest [12:20:20]: test run-unit-test: [----------------------- 140s Performing lossless compression on 1 files... 140s ERROR: 'Dataset' object has no attribute 'value' on file /tmp/autopkgtest.zHnPqD/autopkgtest_tmp/sample_data/picopore.test.albacore_1d_original.fast5 140s .Complete. 140s Original size: 673522 140s Compressed size: 673522 140s Performing lossless decompression on 1 files... 140s ERROR: 'Dataset' object has no attribute 'value' on file /tmp/autopkgtest.zHnPqD/autopkgtest_tmp/sample_data/picopore.test.albacore_1d_original.fast5 140s .Complete. 140s Compressed size: 673522 140s Reverted size: 1347044 140s Checking equivalence of /tmp/autopkgtest.zHnPqD/autopkgtest_tmp/sample_data/albacore_1d_original.fast5 (file 1) and /tmp/autopkgtest.zHnPqD/autopkgtest_tmp/sample_data/picopore.test.albacore_1d_original.fast5 (file 2)... 140s Complete with 0 errors. 140s Performing lossless compression on 1 files... 140s ERROR: 'Dataset' object has no attribute 'value' on file /tmp/autopkgtest.zHnPqD/autopkgtest_tmp/sample_data/picopore.test.albacore_1d_original.fast5 140s .Complete. 140s Original size: 673522 140s Compressed size: 673522 141s Performing deep lossless compression on 1 files... 141s .Complete. 141s Original size: 673522 141s Compressed size: 629000 141s Performing deep lossless decompression on 1 files... 141s ERROR: 'Dataset' object has no attribute 'value' on file /tmp/autopkgtest.zHnPqD/autopkgtest_tmp/sample_data/picopore.test.albacore_1d_original.fast5 141s .Complete. 141s Compressed size: 629000 141s Reverted size: 1276128 141s Checking equivalence of /tmp/autopkgtest.zHnPqD/autopkgtest_tmp/sample_data/albacore_1d_original.fast5 (file 1) and /tmp/autopkgtest.zHnPqD/autopkgtest_tmp/sample_data/picopore.test.albacore_1d_original.fast5 (file 2)... 141s Complete with 0 errors. 141s Performing deep lossless compression on 1 files... 141s .Complete. 141s Original size: 673522 141s Compressed size: 629000 141s Performing raw compression with FASTQ and summary on 1 files... 141s .Complete. 141s Original size: 673522 141s Compressed size: 119182 141s Performing raw compression with summary and no FASTQ on 1 files... 141s .Complete. 141s Original size: 673522 141s Compressed size: 103635 141s Performing raw compression with FASTQ and no summary on 1 files... 141s .Complete. 141s Original size: 673522 141s Compressed size: 116766 142s Performing raw compression with no summary and no FASTQ on 1 files... 142s .Complete. 142s Original size: 673522 142s Compressed size: 98915 142s Performing raw compression with manual keyword Analyses on 1 files... 142s .Complete. 142s Original size: 673522 142s Compressed size: 98915 142s Performing lossless compression on 1 files... 142s ERROR: 'Dataset' object has no attribute 'value' on file /tmp/autopkgtest.zHnPqD/autopkgtest_tmp/sample_data/picopore.test.metrichor_2d_original.fast5 142s .Complete. 142s Original size: 2003942 142s Compressed size: 2003942 142s Performing lossless decompression on 1 files... 142s ERROR: 'Dataset' object has no attribute 'value' on file /tmp/autopkgtest.zHnPqD/autopkgtest_tmp/sample_data/picopore.test.metrichor_2d_original.fast5 142s .Complete. 142s Compressed size: 2003942 142s Reverted size: 4007884 142s Checking equivalence of /tmp/autopkgtest.zHnPqD/autopkgtest_tmp/sample_data/metrichor_2d_original.fast5 (file 1) and /tmp/autopkgtest.zHnPqD/autopkgtest_tmp/sample_data/picopore.test.metrichor_2d_original.fast5 (file 2)... 142s Complete with 0 errors. 143s Performing lossless compression on 1 files... 143s ERROR: 'Dataset' object has no attribute 'value' on file /tmp/autopkgtest.zHnPqD/autopkgtest_tmp/sample_data/picopore.test.metrichor_2d_original.fast5 143s .Complete. 143s Original size: 2003942 143s Compressed size: 2003942 143s Performing deep lossless compression on 1 files... 143s ERROR: 'Dataset' object has no attribute 'value' on file /tmp/autopkgtest.zHnPqD/autopkgtest_tmp/sample_data/picopore.test.metrichor_2d_original.fast5 143s .Complete. 143s Original size: 2003942 143s Compressed size: 2003942 143s Performing deep lossless decompression on 1 files... 143s ERROR: 'Dataset' object has no attribute 'value' on file /tmp/autopkgtest.zHnPqD/autopkgtest_tmp/sample_data/picopore.test.metrichor_2d_original.fast5 143s .Complete. 143s Compressed size: 2003942 143s Reverted size: 4007884 143s Checking equivalence of /tmp/autopkgtest.zHnPqD/autopkgtest_tmp/sample_data/metrichor_2d_original.fast5 (file 1) and /tmp/autopkgtest.zHnPqD/autopkgtest_tmp/sample_data/picopore.test.metrichor_2d_original.fast5 (file 2)... 143s Complete with 0 errors. 143s Performing deep lossless compression on 1 files... 143s ERROR: 'Dataset' object has no attribute 'value' on file /tmp/autopkgtest.zHnPqD/autopkgtest_tmp/sample_data/picopore.test.metrichor_2d_original.fast5 143s .Complete. 143s Original size: 2003942 143s Compressed size: 2003942 143s Performing raw compression with FASTQ and summary on 1 files... 143s .Complete. 143s Original size: 2003942 143s Compressed size: 270517 144s Performing raw compression with summary and no FASTQ on 1 files... 144s .Complete. 144s Original size: 2003942 144s Compressed size: 232978 144s Performing raw compression with FASTQ and no summary on 1 files... 144s .Complete. 144s Original size: 2003942 144s Compressed size: 261197 144s Performing raw compression with no summary and no FASTQ on 1 files... 144s .Complete. 144s Original size: 2003942 144s Compressed size: 219602 144s Performing raw compression with manual keyword Analyses on 1 files... 144s .Complete. 144s Original size: 2003942 144s Compressed size: 219602 145s Performing real time lossless compression... 145s Monitoring /tmp/autopkgtest.zHnPqD/autopkgtest_tmp/realtime in real time. Press Ctrl+C to exit. 145s No files found under /tmp/autopkgtest.zHnPqD/autopkgtest_tmp/realtime 154s ERROR: 'Dataset' object has no attribute 'value' on file /tmp/autopkgtest.zHnPqD/autopkgtest_tmp/realtime/albacore_1d_original.fast5 164s .ERROR: Unable to open file (truncated file: eof = 1458176, sblock->base_addr = 0, stored_eof = 2003942) on file /tmp/autopkgtest.zHnPqD/autopkgtest_tmp/realtime/metrichor_2d_original.fast5 175s . 175s Exiting Picopore. 175s Processing in-progress files. Press Ctrl-C again to abort. 175s Complete. 175s Original size: 1316594 175s Compressed size: 2677464 175s Performing real time deep lossless compression... 175s Monitoring /tmp/autopkgtest.zHnPqD/autopkgtest_tmp/realtime in real time. Press Ctrl+C to exit. 175s No files found under /tmp/autopkgtest.zHnPqD/autopkgtest_tmp/realtime 195s .ERROR: Unable to open file (truncated file: eof = 1601536, sblock->base_addr = 0, stored_eof = 2003942) on file /tmp/autopkgtest.zHnPqD/autopkgtest_tmp/realtime/metrichor_2d_original.fast5 205s . 205s Exiting Picopore. 205s Processing in-progress files. Press Ctrl-C again to abort. 205s Complete. 205s Original size: 1332978 205s Compressed size: 2632942 205s Performing real time raw compression with FASTQ and summary... 205s Monitoring /tmp/autopkgtest.zHnPqD/autopkgtest_tmp/realtime in real time. Press Ctrl+C to exit. 205s No files found under /tmp/autopkgtest.zHnPqD/autopkgtest_tmp/realtime 225s .ERROR: Unable to open file (truncated file: eof = 1421312, sblock->base_addr = 0, stored_eof = 2003942) on file /tmp/autopkgtest.zHnPqD/autopkgtest_tmp/realtime/metrichor_2d_original.fast5 235s . 235s Exiting Picopore. 235s Processing in-progress files. Press Ctrl-C again to abort. 235s Complete. 235s Original size: 1279730 235s Compressed size: 2123124 236s Performing real time raw compression with summary and no FASTQ... 236s Monitoring /tmp/autopkgtest.zHnPqD/autopkgtest_tmp/realtime in real time. Press Ctrl+C to exit. 236s No files found under /tmp/autopkgtest.zHnPqD/autopkgtest_tmp/realtime 266s .. 266s Exiting Picopore. 266s Processing in-progress files. Press Ctrl-C again to abort. 266s Complete. 266s Original size: 1509106 266s Compressed size: 336613 266s Performing real time raw compression with FASTQ and no summary... 266s Monitoring /tmp/autopkgtest.zHnPqD/autopkgtest_tmp/realtime in real time. Press Ctrl+C to exit. 266s No files found under /tmp/autopkgtest.zHnPqD/autopkgtest_tmp/realtime 286s .ERROR: Unable to open file (truncated file: eof = 1159168, sblock->base_addr = 0, stored_eof = 2003942) on file /tmp/autopkgtest.zHnPqD/autopkgtest_tmp/realtime/metrichor_2d_original.fast5 296s . 296s Exiting Picopore. 296s Processing in-progress files. Press Ctrl-C again to abort. 296s Complete. 296s Original size: 1119986 296s Compressed size: 2099230 296s Performing real time raw compression with no summary and no FASTQ... 296s Monitoring /tmp/autopkgtest.zHnPqD/autopkgtest_tmp/realtime in real time. Press Ctrl+C to exit. 296s No files found under /tmp/autopkgtest.zHnPqD/autopkgtest_tmp/realtime 316s .ERROR: Unable to open file (truncated file: eof = 1282048, sblock->base_addr = 0, stored_eof = 2003942) on file /tmp/autopkgtest.zHnPqD/autopkgtest_tmp/realtime/metrichor_2d_original.fast5 326s . 326s Exiting Picopore. 326s Processing in-progress files. Press Ctrl-C again to abort. 326s Complete. 326s Original size: 1021682 326s Compressed size: 2102857 327s Performing real time raw compression with manual keyword Analyses... 327s Monitoring /tmp/autopkgtest.zHnPqD/autopkgtest_tmp/realtime in real time. Press Ctrl+C to exit. 327s No files found under /tmp/autopkgtest.zHnPqD/autopkgtest_tmp/realtime 346s .ERROR: Unable to open file (truncated file: eof = 1667072, sblock->base_addr = 0, stored_eof = 2003942) on file /tmp/autopkgtest.zHnPqD/autopkgtest_tmp/realtime/metrichor_2d_original.fast5 357s . 357s Exiting Picopore. 357s Processing in-progress files. Press Ctrl-C again to abort. 357s Complete. 357s Original size: 1390322 357s Compressed size: 2102857 357s python3 -m picopore -y --print-every 1 --test --mode lossless sample_data/albacore_1d_original.fast5 357s python3 -m picopore -y --print-every 1 --prefix picopore.test --mode lossless sample_data/albacore_1d_original.fast5 357s python3 -m picopore -y --print-every 1 --test --mode deep-lossless sample_data/albacore_1d_original.fast5 357s python3 -m picopore -y --print-every 1 --prefix picopore.test --mode deep-lossless sample_data/albacore_1d_original.fast5 357s python3 -m picopore -y --print-every 1 --prefix picopore.test --mode raw --fastq --summary sample_data/albacore_1d_original.fast5 357s python3 -m picopore -y --print-every 1 --prefix picopore.test --mode raw --summary --no-fastq sample_data/albacore_1d_original.fast5 357s python3 -m picopore -y --print-every 1 --prefix picopore.test --mode raw --fastq --no-summary sample_data/albacore_1d_original.fast5 357s python3 -m picopore -y --print-every 1 --prefix picopore.test --mode raw --no-fastq --no-summary sample_data/albacore_1d_original.fast5 357s python3 -m picopore -y --print-every 1 --prefix picopore.test --mode raw --manual Analyses sample_data/albacore_1d_original.fast5 357s python3 -m picopore -y --print-every 1 --test --mode lossless sample_data/metrichor_2d_original.fast5 357s python3 -m picopore -y --print-every 1 --prefix picopore.test --mode lossless sample_data/metrichor_2d_original.fast5 357s python3 -m picopore -y --print-every 1 --test --mode deep-lossless sample_data/metrichor_2d_original.fast5 357s python3 -m picopore -y --print-every 1 --prefix picopore.test --mode deep-lossless sample_data/metrichor_2d_original.fast5 357s python3 -m picopore -y --print-every 1 --prefix picopore.test --mode raw --fastq --summary sample_data/metrichor_2d_original.fast5 357s python3 -m picopore -y --print-every 1 --prefix picopore.test --mode raw --summary --no-fastq sample_data/metrichor_2d_original.fast5 357s python3 -m picopore -y --print-every 1 --prefix picopore.test --mode raw --fastq --no-summary sample_data/metrichor_2d_original.fast5 357s python3 -m picopore -y --print-every 1 --prefix picopore.test --mode raw --no-fastq --no-summary sample_data/metrichor_2d_original.fast5 357s python3 -m picopore -y --print-every 1 --prefix picopore.test --mode raw --manual Analyses sample_data/metrichor_2d_original.fast5 357s python3 -m picopore -y --realtime --print-every 1 --mode lossless realtime 357s python3 -m picopore -y --realtime --print-every 1 --mode deep-lossless realtime 357s python3 -m picopore -y --realtime --print-every 1 --fastq --summary --mode raw realtime 357s python3 -m picopore -y --realtime --print-every 1 --summary --no-fastq --mode raw realtime 357s python3 -m picopore -y --realtime --print-every 1 --fastq --no-summary --mode raw realtime 357s python3 -m picopore -y --realtime --print-every 1 --no-fastq --no-summary --mode raw realtime 357s python3 -m picopore -y --realtime --print-every 1 --manual Analyses --mode raw realtime 357s PASS 357s autopkgtest [12:23:57]: test run-unit-test: -----------------------] 357s run-unit-test PASS 357s autopkgtest [12:23:57]: test run-unit-test: - - - - - - - - - - results - - - - - - - - - - 358s autopkgtest [12:23:58]: test autodep8-python3: preparing testbed 475s autopkgtest [12:25:55]: testbed dpkg architecture: s390x 475s autopkgtest [12:25:55]: testbed apt version: 2.9.8 475s autopkgtest [12:25:55]: @@@@@@@@@@@@@@@@@@@@ test bed setup 476s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease [73.9 kB] 476s Get:2 http://ftpmaster.internal/ubuntu plucky-proposed/main Sources [104 kB] 476s Get:3 http://ftpmaster.internal/ubuntu plucky-proposed/restricted Sources [7016 B] 476s Get:4 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse Sources [16.5 kB] 476s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/universe Sources [967 kB] 476s Get:6 http://ftpmaster.internal/ubuntu plucky-proposed/main s390x Packages [107 kB] 476s Get:7 http://ftpmaster.internal/ubuntu plucky-proposed/universe s390x Packages [641 kB] 476s Get:8 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse s390x Packages [17.4 kB] 476s Fetched 1934 kB in 1s (2422 kB/s) 476s Reading package lists... 478s Reading package lists... 478s Building dependency tree... 478s Reading state information... 479s Calculating upgrade... 479s The following NEW packages will be installed: 479s python3.13-gdbm 479s The following packages will be upgraded: 479s libgpgme11t64 libpython3-stdlib python3 python3-gdbm python3-minimal 479s 5 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. 479s Need to get 252 kB of archives. 479s After this operation, 98.3 kB of additional disk space will be used. 479s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed/main s390x python3-minimal s390x 3.12.7-1 [27.4 kB] 479s Get:2 http://ftpmaster.internal/ubuntu plucky-proposed/main s390x python3 s390x 3.12.7-1 [24.0 kB] 479s Get:3 http://ftpmaster.internal/ubuntu plucky-proposed/main s390x libpython3-stdlib s390x 3.12.7-1 [10.0 kB] 479s Get:4 http://ftpmaster.internal/ubuntu plucky/main s390x python3.13-gdbm s390x 3.13.0-2 [31.0 kB] 479s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/main s390x python3-gdbm s390x 3.12.7-1 [8642 B] 479s Get:6 http://ftpmaster.internal/ubuntu plucky/main s390x libgpgme11t64 s390x 1.23.2-5ubuntu4 [151 kB] 479s Fetched 252 kB in 0s (619 kB/s) 479s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 55510 files and directories currently installed.) 479s Preparing to unpack .../python3-minimal_3.12.7-1_s390x.deb ... 479s Unpacking python3-minimal (3.12.7-1) over (3.12.6-0ubuntu1) ... 480s Setting up python3-minimal (3.12.7-1) ... 480s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 55510 files and directories currently installed.) 480s Preparing to unpack .../python3_3.12.7-1_s390x.deb ... 480s Unpacking python3 (3.12.7-1) over (3.12.6-0ubuntu1) ... 480s Preparing to unpack .../libpython3-stdlib_3.12.7-1_s390x.deb ... 480s Unpacking libpython3-stdlib:s390x (3.12.7-1) over (3.12.6-0ubuntu1) ... 480s Selecting previously unselected package python3.13-gdbm. 480s Preparing to unpack .../python3.13-gdbm_3.13.0-2_s390x.deb ... 480s Unpacking python3.13-gdbm (3.13.0-2) ... 480s Preparing to unpack .../python3-gdbm_3.12.7-1_s390x.deb ... 480s Unpacking python3-gdbm:s390x (3.12.7-1) over (3.12.6-1ubuntu1) ... 480s Preparing to unpack .../libgpgme11t64_1.23.2-5ubuntu4_s390x.deb ... 480s Unpacking libgpgme11t64:s390x (1.23.2-5ubuntu4) over (1.18.0-4.1ubuntu4) ... 480s Setting up libgpgme11t64:s390x (1.23.2-5ubuntu4) ... 480s Setting up python3.13-gdbm (3.13.0-2) ... 480s Setting up libpython3-stdlib:s390x (3.12.7-1) ... 480s Setting up python3 (3.12.7-1) ... 480s Setting up python3-gdbm:s390x (3.12.7-1) ... 480s Processing triggers for man-db (2.12.1-3) ... 480s Processing triggers for libc-bin (2.40-1ubuntu3) ... 481s Reading package lists... 481s Building dependency tree... 481s Reading state information... 481s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 481s Hit:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease 481s Hit:2 http://ftpmaster.internal/ubuntu plucky InRelease 481s Hit:3 http://ftpmaster.internal/ubuntu plucky-updates InRelease 481s Hit:4 http://ftpmaster.internal/ubuntu plucky-security InRelease 482s Reading package lists... 482s Reading package lists... 482s Building dependency tree... 482s Reading state information... 482s Calculating upgrade... 483s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 483s Reading package lists... 483s Building dependency tree... 483s Reading state information... 483s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 486s Reading package lists... 487s Building dependency tree... 487s Reading state information... 487s Starting pkgProblemResolver with broken count: 0 487s Starting 2 pkgProblemResolver with broken count: 0 487s Done 487s The following additional packages will be installed: 487s hdf5-tools libaec0 libblas3 libgfortran5 libhdf5-103-1t64 libhdf5-hl-100t64 487s libjs-jquery libjs-sphinxdoc libjs-underscore liblapack3 liblzf1 487s libpython3.13-minimal libpython3.13-stdlib libsz2 python3-all python3-h5py 487s python3-h5py-serial python3-numpy python3-picopore python3-watchdog 487s python3.13 python3.13-minimal 487s Suggested packages: 487s python-h5py-doc gcc gfortran python-numpy-doc python3-dev python3-pytest 487s python3.13-venv python3.13-doc binfmt-support 487s Recommended packages: 487s javascript-common 487s The following NEW packages will be installed: 487s autopkgtest-satdep hdf5-tools libaec0 libblas3 libgfortran5 libhdf5-103-1t64 487s libhdf5-hl-100t64 libjs-jquery libjs-sphinxdoc libjs-underscore liblapack3 487s liblzf1 libpython3.13-minimal libpython3.13-stdlib libsz2 python3-all 487s python3-h5py python3-h5py-serial python3-numpy python3-picopore 487s python3-watchdog python3.13 python3.13-minimal 487s 0 upgraded, 23 newly installed, 0 to remove and 0 not upgraded. 487s Need to get 17.5 MB/17.5 MB of archives. 487s After this operation, 68.1 MB of additional disk space will be used. 487s Get:1 /tmp/autopkgtest.zHnPqD/2-autopkgtest-satdep.deb autopkgtest-satdep s390x 0 [716 B] 487s Get:2 http://ftpmaster.internal/ubuntu plucky/main s390x libpython3.13-minimal s390x 3.13.0-2 [877 kB] 488s Get:3 http://ftpmaster.internal/ubuntu plucky/main s390x python3.13-minimal s390x 3.13.0-2 [2172 kB] 488s Get:4 http://ftpmaster.internal/ubuntu plucky/universe s390x libaec0 s390x 1.1.3-1 [25.7 kB] 488s Get:5 http://ftpmaster.internal/ubuntu plucky/universe s390x libsz2 s390x 1.1.3-1 [5442 B] 488s Get:6 http://ftpmaster.internal/ubuntu plucky/universe s390x libhdf5-103-1t64 s390x 1.10.10+repack-4ubuntu3 [1426 kB] 488s Get:7 http://ftpmaster.internal/ubuntu plucky/universe s390x hdf5-tools s390x 1.10.10+repack-4ubuntu3 [354 kB] 488s Get:8 http://ftpmaster.internal/ubuntu plucky/main s390x libblas3 s390x 3.12.0-3build2 [238 kB] 488s Get:9 http://ftpmaster.internal/ubuntu plucky/main s390x libgfortran5 s390x 14.2.0-8ubuntu1 [587 kB] 488s Get:10 http://ftpmaster.internal/ubuntu plucky/universe s390x libhdf5-hl-100t64 s390x 1.10.10+repack-4ubuntu3 [58.0 kB] 488s Get:11 http://ftpmaster.internal/ubuntu plucky/main s390x libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [328 kB] 488s Get:12 http://ftpmaster.internal/ubuntu plucky/main s390x libjs-underscore all 1.13.4~dfsg+~1.11.4-3 [118 kB] 488s Get:13 http://ftpmaster.internal/ubuntu plucky/main s390x libjs-sphinxdoc all 7.4.7-4 [158 kB] 488s Get:14 http://ftpmaster.internal/ubuntu plucky/main s390x liblapack3 s390x 3.12.0-3build2 [2953 kB] 488s Get:15 http://ftpmaster.internal/ubuntu plucky/universe s390x liblzf1 s390x 3.6-4 [7020 B] 488s Get:16 http://ftpmaster.internal/ubuntu plucky/main s390x libpython3.13-stdlib s390x 3.13.0-2 [2086 kB] 488s Get:17 http://ftpmaster.internal/ubuntu plucky/main s390x python3.13 s390x 3.13.0-2 [719 kB] 488s Get:18 http://ftpmaster.internal/ubuntu plucky-proposed/main s390x python3-all s390x 3.12.7-1 [890 B] 488s Get:19 http://ftpmaster.internal/ubuntu plucky/main s390x python3-numpy s390x 1:1.26.4+ds-11build1 [4113 kB] 488s Get:20 http://ftpmaster.internal/ubuntu plucky/universe s390x python3-h5py-serial s390x 3.11.0-5ubuntu1 [1151 kB] 488s Get:21 http://ftpmaster.internal/ubuntu plucky/universe s390x python3-h5py all 3.11.0-5ubuntu1 [7974 B] 488s Get:22 http://ftpmaster.internal/ubuntu plucky/universe s390x python3-watchdog all 5.0.0-1 [125 kB] 488s Get:23 http://ftpmaster.internal/ubuntu plucky/universe s390x python3-picopore all 1.2.0-3 [15.6 kB] 488s Fetched 17.5 MB in 1s (16.0 MB/s) 488s Selecting previously unselected package libpython3.13-minimal:s390x. 488s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 55517 files and directories currently installed.) 488s Preparing to unpack .../00-libpython3.13-minimal_3.13.0-2_s390x.deb ... 488s Unpacking libpython3.13-minimal:s390x (3.13.0-2) ... 488s Selecting previously unselected package python3.13-minimal. 488s Preparing to unpack .../01-python3.13-minimal_3.13.0-2_s390x.deb ... 488s Unpacking python3.13-minimal (3.13.0-2) ... 488s Selecting previously unselected package libaec0:s390x. 488s Preparing to unpack .../02-libaec0_1.1.3-1_s390x.deb ... 488s Unpacking libaec0:s390x (1.1.3-1) ... 488s Selecting previously unselected package libsz2:s390x. 488s Preparing to unpack .../03-libsz2_1.1.3-1_s390x.deb ... 488s Unpacking libsz2:s390x (1.1.3-1) ... 488s Selecting previously unselected package libhdf5-103-1t64:s390x. 488s Preparing to unpack .../04-libhdf5-103-1t64_1.10.10+repack-4ubuntu3_s390x.deb ... 488s Unpacking libhdf5-103-1t64:s390x (1.10.10+repack-4ubuntu3) ... 488s Selecting previously unselected package hdf5-tools. 488s Preparing to unpack .../05-hdf5-tools_1.10.10+repack-4ubuntu3_s390x.deb ... 488s Unpacking hdf5-tools (1.10.10+repack-4ubuntu3) ... 488s Selecting previously unselected package libblas3:s390x. 488s Preparing to unpack .../06-libblas3_3.12.0-3build2_s390x.deb ... 488s Unpacking libblas3:s390x (3.12.0-3build2) ... 488s Selecting previously unselected package libgfortran5:s390x. 488s Preparing to unpack .../07-libgfortran5_14.2.0-8ubuntu1_s390x.deb ... 488s Unpacking libgfortran5:s390x (14.2.0-8ubuntu1) ... 489s Selecting previously unselected package libhdf5-hl-100t64:s390x. 489s Preparing to unpack .../08-libhdf5-hl-100t64_1.10.10+repack-4ubuntu3_s390x.deb ... 489s Unpacking libhdf5-hl-100t64:s390x (1.10.10+repack-4ubuntu3) ... 489s Selecting previously unselected package libjs-jquery. 489s Preparing to unpack .../09-libjs-jquery_3.6.1+dfsg+~3.5.14-1_all.deb ... 489s Unpacking libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... 489s Selecting previously unselected package libjs-underscore. 489s Preparing to unpack .../10-libjs-underscore_1.13.4~dfsg+~1.11.4-3_all.deb ... 489s Unpacking libjs-underscore (1.13.4~dfsg+~1.11.4-3) ... 489s Selecting previously unselected package libjs-sphinxdoc. 489s Preparing to unpack .../11-libjs-sphinxdoc_7.4.7-4_all.deb ... 489s Unpacking libjs-sphinxdoc (7.4.7-4) ... 489s Selecting previously unselected package liblapack3:s390x. 489s Preparing to unpack .../12-liblapack3_3.12.0-3build2_s390x.deb ... 489s Unpacking liblapack3:s390x (3.12.0-3build2) ... 489s Selecting previously unselected package liblzf1:s390x. 489s Preparing to unpack .../13-liblzf1_3.6-4_s390x.deb ... 489s Unpacking liblzf1:s390x (3.6-4) ... 489s Selecting previously unselected package libpython3.13-stdlib:s390x. 489s Preparing to unpack .../14-libpython3.13-stdlib_3.13.0-2_s390x.deb ... 489s Unpacking libpython3.13-stdlib:s390x (3.13.0-2) ... 489s Selecting previously unselected package python3.13. 489s Preparing to unpack .../15-python3.13_3.13.0-2_s390x.deb ... 489s Unpacking python3.13 (3.13.0-2) ... 489s Selecting previously unselected package python3-all. 489s Preparing to unpack .../16-python3-all_3.12.7-1_s390x.deb ... 489s Unpacking python3-all (3.12.7-1) ... 489s Selecting previously unselected package python3-numpy. 489s Preparing to unpack .../17-python3-numpy_1%3a1.26.4+ds-11build1_s390x.deb ... 489s Unpacking python3-numpy (1:1.26.4+ds-11build1) ... 489s Selecting previously unselected package python3-h5py-serial. 489s Preparing to unpack .../18-python3-h5py-serial_3.11.0-5ubuntu1_s390x.deb ... 489s Unpacking python3-h5py-serial (3.11.0-5ubuntu1) ... 489s Selecting previously unselected package python3-h5py. 489s Preparing to unpack .../19-python3-h5py_3.11.0-5ubuntu1_all.deb ... 489s Unpacking python3-h5py (3.11.0-5ubuntu1) ... 489s Selecting previously unselected package python3-watchdog. 489s Preparing to unpack .../20-python3-watchdog_5.0.0-1_all.deb ... 489s Unpacking python3-watchdog (5.0.0-1) ... 489s Selecting previously unselected package python3-picopore. 489s Preparing to unpack .../21-python3-picopore_1.2.0-3_all.deb ... 489s Unpacking python3-picopore (1.2.0-3) ... 489s Selecting previously unselected package autopkgtest-satdep. 489s Preparing to unpack .../22-2-autopkgtest-satdep.deb ... 489s Unpacking autopkgtest-satdep (0) ... 489s Setting up libaec0:s390x (1.1.3-1) ... 489s Setting up libpython3.13-minimal:s390x (3.13.0-2) ... 489s Setting up libblas3:s390x (3.12.0-3build2) ... 489s update-alternatives: using /usr/lib/s390x-linux-gnu/blas/libblas.so.3 to provide /usr/lib/s390x-linux-gnu/libblas.so.3 (libblas.so.3-s390x-linux-gnu) in auto mode 489s Setting up liblzf1:s390x (3.6-4) ... 489s Setting up libgfortran5:s390x (14.2.0-8ubuntu1) ... 489s Setting up python3.13-minimal (3.13.0-2) ... 490s Setting up libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... 490s Setting up libpython3.13-stdlib:s390x (3.13.0-2) ... 490s Setting up libsz2:s390x (1.1.3-1) ... 490s Setting up libjs-underscore (1.13.4~dfsg+~1.11.4-3) ... 490s Setting up liblapack3:s390x (3.12.0-3build2) ... 490s update-alternatives: using /usr/lib/s390x-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/s390x-linux-gnu/liblapack.so.3 (liblapack.so.3-s390x-linux-gnu) in auto mode 490s Setting up python3.13 (3.13.0-2) ... 491s Setting up python3-all (3.12.7-1) ... 491s Setting up python3-numpy (1:1.26.4+ds-11build1) ... 495s Setting up libjs-sphinxdoc (7.4.7-4) ... 495s Setting up libhdf5-103-1t64:s390x (1.10.10+repack-4ubuntu3) ... 495s Setting up libhdf5-hl-100t64:s390x (1.10.10+repack-4ubuntu3) ... 495s Setting up python3-watchdog (5.0.0-1) ... 495s Setting up python3-h5py-serial (3.11.0-5ubuntu1) ... 496s Setting up hdf5-tools (1.10.10+repack-4ubuntu3) ... 496s Setting up python3-h5py (3.11.0-5ubuntu1) ... 496s Setting up python3-picopore (1.2.0-3) ... 496s Setting up autopkgtest-satdep (0) ... 496s Processing triggers for systemd (256.5-2ubuntu4) ... 496s Processing triggers for man-db (2.12.1-3) ... 496s Processing triggers for libc-bin (2.40-1ubuntu3) ... 498s (Reading database ... 57500 files and directories currently installed.) 498s Removing autopkgtest-satdep (0) ... 500s autopkgtest [12:26:20]: test autodep8-python3: set -e ; for py in $(py3versions -r 2>/dev/null) ; do cd "$AUTOPKGTEST_TMP" ; echo "Testing with $py:" ; $py -c "import picopore; print(picopore)" ; done 500s autopkgtest [12:26:20]: test autodep8-python3: [----------------------- 500s Testing with python3.13: 500s Traceback (most recent call last): 500s File "/usr/lib/python3/dist-packages/numpy/core/__init__.py", line 24, in 500s from . import multiarray 500s File "/usr/lib/python3/dist-packages/numpy/core/multiarray.py", line 10, in 500s from . import overrides 500s File "/usr/lib/python3/dist-packages/numpy/core/overrides.py", line 8, in 500s from numpy.core._multiarray_umath import ( 500s add_docstring, _get_implementing_args, _ArrayFunctionDispatcher) 500s ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 500s 500s During handling of the above exception, another exception occurred: 500s 500s Traceback (most recent call last): 500s File "/usr/lib/python3/dist-packages/numpy/__init__.py", line 130, in 500s from numpy.__config__ import show as show_config 500s File "/usr/lib/python3/dist-packages/numpy/__config__.py", line 4, in 500s from numpy.core._multiarray_umath import ( 500s ...<3 lines>... 500s ) 500s File "/usr/lib/python3/dist-packages/numpy/core/__init__.py", line 50, in 500s raise ImportError(msg) 500s ImportError: 500s 500s IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 500s 500s Importing the numpy C-extensions failed. This error can happen for 500s many reasons, often due to issues with your setup or how NumPy was 500s installed. 500s 500s We have compiled some common reasons and troubleshooting tips at: 500s 500s https://numpy.org/devdocs/user/troubleshooting-importerror.html 500s 500s Please note and check the following: 500s 500s * The Python version is: Python3.13 from "/usr/bin/python3.13" 500s * The NumPy version is: "1.26.4" 500s 500s and make sure that they are the versions you expect. 500s Please carefully study the documentation linked above for further help. 500s 500s Original error was: No module named 'numpy.core._multiarray_umath' 500s 500s 500s The above exception was the direct cause of the following exception: 500s 500s Traceback (most recent call last): 500s File "", line 1, in 500s import picopore; print(picopore) 500s ^^^^^^^^^^^^^^^ 500s File "/usr/lib/python3/dist-packages/picopore/__init__.py", line 2, in 500s from picopore.util import log 500s File "/usr/lib/python3/dist-packages/picopore/util.py", line 19, in 500s import numpy as np 500s File "/usr/lib/python3/dist-packages/numpy/__init__.py", line 135, in 500s raise ImportError(msg) from e 500s ImportError: Error importing numpy: you should not try to import numpy from 500s its source directory; please exit the numpy source tree, and relaunch 500s your python interpreter from there. 501s autopkgtest [12:26:21]: test autodep8-python3: -----------------------] 501s autodep8-python3 FAIL non-zero exit status 1 501s autopkgtest [12:26:21]: test autodep8-python3: - - - - - - - - - - results - - - - - - - - - - 501s autopkgtest [12:26:21]: @@@@@@@@@@@@@@@@@@@@ summary 501s run-unit-test PASS 501s autodep8-python3 FAIL non-zero exit status 1 513s nova [W] Using flock in prodstack6-s390x 513s Creating nova instance adt-plucky-s390x-picopore-20241113-121800-juju-7f2275-prod-proposed-migration-environment-15-cea203df-9feb-48be-8cf8-efa2bd3efc76 from image adt/ubuntu-plucky-s390x-server-20241113.img (UUID e740277e-1f72-40ae-bfbe-46030537c71c)... 513s nova [W] Using flock in prodstack6-s390x 513s flock: timeout while waiting to get lock 513s Creating nova instance adt-plucky-s390x-picopore-20241113-121800-juju-7f2275-prod-proposed-migration-environment-15-cea203df-9feb-48be-8cf8-efa2bd3efc76 from image adt/ubuntu-plucky-s390x-server-20241113.img (UUID e740277e-1f72-40ae-bfbe-46030537c71c)...