0s autopkgtest [16:41:26]: starting date and time: 2025-03-15 16:41:26+0000 0s autopkgtest [16:41:26]: git checkout: 325255d2 Merge branch 'pin-any-arch' into 'ubuntu/production' 0s autopkgtest [16:41:26]: host juju-7f2275-prod-proposed-migration-environment-15; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.ayqt4yja/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:glibc --apt-upgrade phylip --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=glibc/2.41-1ubuntu2 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest-s390x --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-15@bos03-s390x-32.secgroup --name adt-plucky-s390x-phylip-20250315-164125-juju-7f2275-prod-proposed-migration-environment-15-971d4a12-21a5-4816-aa3e-64f3bd5f3040 --image adt/ubuntu-plucky-s390x-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-15 --net-id=net_prod-proposed-migration-s390x -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,keyserver.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com,radosgw.ps5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/ 136s autopkgtest [16:43:42]: testbed dpkg architecture: s390x 137s autopkgtest [16:43:43]: testbed apt version: 2.9.33 137s autopkgtest [16:43:43]: @@@@@@@@@@@@@@@@@@@@ test bed setup 138s autopkgtest [16:43:43]: testbed release detected to be: None 138s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease [126 kB] 138s autopkgtest [16:43:44]: updating testbed package index (apt update) 138s Hit:2 http://ftpmaster.internal/ubuntu plucky InRelease 138s Hit:3 http://ftpmaster.internal/ubuntu plucky-updates InRelease 139s Hit:4 http://ftpmaster.internal/ubuntu plucky-security InRelease 139s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/universe Sources [379 kB] 139s Get:6 http://ftpmaster.internal/ubuntu plucky-proposed/main Sources [99.7 kB] 139s Get:7 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse Sources [15.8 kB] 139s Get:8 http://ftpmaster.internal/ubuntu plucky-proposed/main s390x Packages [113 kB] 139s Get:9 http://ftpmaster.internal/ubuntu plucky-proposed/main s390x c-n-f Metadata [1824 B] 139s Get:10 http://ftpmaster.internal/ubuntu plucky-proposed/restricted s390x c-n-f Metadata [116 B] 139s Get:11 http://ftpmaster.internal/ubuntu plucky-proposed/universe s390x Packages [320 kB] 139s Get:12 http://ftpmaster.internal/ubuntu plucky-proposed/universe s390x c-n-f Metadata [13.4 kB] 140s Get:13 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse s390x Packages [3776 B] 140s Get:14 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse s390x c-n-f Metadata [240 B] 140s Fetched 1073 kB in 2s (682 kB/s) 140s Reading package lists... 141s + lsb_release --codename --short 141s + RELEASE=plucky 141s + cat 141s + [ plucky != trusty ] 141s + DEBIAN_FRONTEND=noninteractive eatmydata apt-get -y --allow-downgrades -o Dpkg::Options::=--force-confnew dist-upgrade 141s Reading package lists... 141s Building dependency tree... 141s Reading state information... 141s Calculating upgrade... 141s Calculating upgrade... 141s The following packages were automatically installed and are no longer required: 141s libnsl2 libpython3.12-minimal libpython3.12-stdlib libpython3.12t64 141s linux-headers-6.11.0-8 linux-headers-6.11.0-8-generic 141s linux-modules-6.11.0-8-generic linux-tools-6.11.0-8 141s linux-tools-6.11.0-8-generic 141s Use 'sudo apt autoremove' to remove them. 141s The following packages will be upgraded: 141s pinentry-curses python3-jinja2 strace 141s 3 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 141s Need to get 652 kB of archives. 141s After this operation, 27.6 kB of additional disk space will be used. 141s Get:1 http://ftpmaster.internal/ubuntu plucky/main s390x strace s390x 6.13+ds-1ubuntu1 [500 kB] 142s Get:2 http://ftpmaster.internal/ubuntu plucky/main s390x pinentry-curses s390x 1.3.1-2ubuntu3 [42.9 kB] 142s Get:3 http://ftpmaster.internal/ubuntu plucky/main s390x python3-jinja2 all 3.1.5-2ubuntu1 [109 kB] 142s Fetched 652 kB in 1s (662 kB/s) 143s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 81428 files and directories currently installed.) 143s Preparing to unpack .../strace_6.13+ds-1ubuntu1_s390x.deb ... 143s Unpacking strace (6.13+ds-1ubuntu1) over (6.11-0ubuntu1) ... 143s Preparing to unpack .../pinentry-curses_1.3.1-2ubuntu3_s390x.deb ... 143s Unpacking pinentry-curses (1.3.1-2ubuntu3) over (1.3.1-2ubuntu2) ... 143s Preparing to unpack .../python3-jinja2_3.1.5-2ubuntu1_all.deb ... 143s Unpacking python3-jinja2 (3.1.5-2ubuntu1) over (3.1.5-2) ... 143s Setting up pinentry-curses (1.3.1-2ubuntu3) ... 143s Setting up python3-jinja2 (3.1.5-2ubuntu1) ... 143s Setting up strace (6.13+ds-1ubuntu1) ... 143s Processing triggers for man-db (2.13.0-1) ... 143s + rm /etc/apt/preferences.d/force-downgrade-to-release.pref 143s + /usr/lib/apt/apt-helper analyze-pattern ?true 143s + uname -r 143s + sed s/\./\\./g 143s + running_kernel_pattern=^linux-.*6\.14\.0-10-generic.* 144s + apt list ?obsolete 144s + tail -n+2 144s + cut -d/ -f1 144s + grep -v ^linux-.*6\.14\.0-10-generic.* 144s Reading package lists...+ obsolete_pkgs=linux-headers-6.11.0-8-generic 144s linux-headers-6.11.0-8 144s linux-modules-6.11.0-8-generic 144s linux-tools-6.11.0-8-generic 144s linux-tools-6.11.0-8 144s + DEBIAN_FRONTEND=noninteractive eatmydata apt-get -y purge --autoremove linux-headers-6.11.0-8-generic linux-headers-6.11.0-8 linux-modules-6.11.0-8-generic linux-tools-6.11.0-8-generic linux-tools-6.11.0-8 144s 144s Building dependency tree... 144s Reading state information... 144s Solving dependencies... 144s The following packages will be REMOVED: 144s libnsl2* libpython3.12-minimal* libpython3.12-stdlib* libpython3.12t64* 144s linux-headers-6.11.0-8* linux-headers-6.11.0-8-generic* 144s linux-modules-6.11.0-8-generic* linux-tools-6.11.0-8* 144s linux-tools-6.11.0-8-generic* 144s 0 upgraded, 0 newly installed, 9 to remove and 5 not upgraded. 144s After this operation, 167 MB disk space will be freed. 144s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 81428 files and directories currently installed.) 144s Removing linux-tools-6.11.0-8-generic (6.11.0-8.8) ... 144s Removing linux-tools-6.11.0-8 (6.11.0-8.8) ... 144s Removing libpython3.12t64:s390x (3.12.9-1) ... 144s Removing libpython3.12-stdlib:s390x (3.12.9-1) ... 144s Removing libnsl2:s390x (1.3.0-3build3) ... 144s Removing libpython3.12-minimal:s390x (3.12.9-1) ... 144s Removing linux-headers-6.11.0-8-generic (6.11.0-8.8) ... 144s Removing linux-headers-6.11.0-8 (6.11.0-8.8) ... 145s Removing linux-modules-6.11.0-8-generic (6.11.0-8.8) ... 145s Processing triggers for libc-bin (2.41-1ubuntu1) ... 145s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 56328 files and directories currently installed.) 145s Purging configuration files for libpython3.12-minimal:s390x (3.12.9-1) ... 145s Purging configuration files for linux-modules-6.11.0-8-generic (6.11.0-8.8) ... 145s + grep -q trusty /etc/lsb-release 145s + [ ! -d /usr/share/doc/unattended-upgrades ] 145s + [ ! -d /usr/share/doc/lxd ] 145s + [ ! -d /usr/share/doc/lxd-client ] 145s + [ ! -d /usr/share/doc/snapd ] 145s + type iptables 145s + cat 145s + chmod 755 /etc/rc.local 145s + . /etc/rc.local 145s + iptables -w -t mangle -A FORWARD -p tcp --tcp-flags SYN,RST SYN -j TCPMSS --clamp-mss-to-pmtu 145s + iptables -A OUTPUT -d 10.255.255.1/32 -p tcp -j DROP 145s + iptables -A OUTPUT -d 10.255.255.2/32 -p tcp -j DROP 145s + uname -m 145s + [ s390x = ppc64le ] 145s + [ -d /run/systemd/system ] 145s + systemd-detect-virt --quiet --vm 145s + mkdir -p /etc/systemd/system/systemd-random-seed.service.d/ 145s + cat 145s + grep -q lz4 /etc/initramfs-tools/initramfs.conf 145s + echo COMPRESS=lz4 145s autopkgtest [16:43:51]: upgrading testbed (apt dist-upgrade and autopurge) 145s Reading package lists... 146s Building dependency tree... 146s Reading state information... 146s Calculating upgrade...Starting pkgProblemResolver with broken count: 0 146s Starting 2 pkgProblemResolver with broken count: 0 146s Done 146s Entering ResolveByKeep 146s 146s Calculating upgrade... 146s The following packages will be upgraded: 146s libc-bin libc-dev-bin libc6 libc6-dev locales 146s 5 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 146s Need to get 9512 kB of archives. 146s After this operation, 8192 B of additional disk space will be used. 146s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed/main s390x libc6-dev s390x 2.41-1ubuntu2 [1678 kB] 149s Get:2 http://ftpmaster.internal/ubuntu plucky-proposed/main s390x libc-dev-bin s390x 2.41-1ubuntu2 [24.3 kB] 149s Get:3 http://ftpmaster.internal/ubuntu plucky-proposed/main s390x libc6 s390x 2.41-1ubuntu2 [2892 kB] 151s Get:4 http://ftpmaster.internal/ubuntu plucky-proposed/main s390x libc-bin s390x 2.41-1ubuntu2 [671 kB] 152s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/main s390x locales all 2.41-1ubuntu2 [4246 kB] 156s Preconfiguring packages ... 156s Fetched 9512 kB in 10s (970 kB/s) 156s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 56326 files and directories currently installed.) 156s Preparing to unpack .../libc6-dev_2.41-1ubuntu2_s390x.deb ... 156s Unpacking libc6-dev:s390x (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 156s Preparing to unpack .../libc-dev-bin_2.41-1ubuntu2_s390x.deb ... 156s Unpacking libc-dev-bin (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 156s Preparing to unpack .../libc6_2.41-1ubuntu2_s390x.deb ... 156s Unpacking libc6:s390x (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 156s Setting up libc6:s390x (2.41-1ubuntu2) ... 157s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 56326 files and directories currently installed.) 157s Preparing to unpack .../libc-bin_2.41-1ubuntu2_s390x.deb ... 157s Unpacking libc-bin (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 157s Setting up libc-bin (2.41-1ubuntu2) ... 157s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 56326 files and directories currently installed.) 157s Preparing to unpack .../locales_2.41-1ubuntu2_all.deb ... 157s Unpacking locales (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 157s Setting up locales (2.41-1ubuntu2) ... 157s Generating locales (this might take a while)... 158s en_US.UTF-8... done 158s Generation complete. 158s Setting up libc-dev-bin (2.41-1ubuntu2) ... 158s Setting up libc6-dev:s390x (2.41-1ubuntu2) ... 158s Processing triggers for man-db (2.13.0-1) ... 159s Processing triggers for systemd (257.3-1ubuntu3) ... 159s Reading package lists... 160s Building dependency tree... 160s Reading state information... 160s Starting pkgProblemResolver with broken count: 0 160s Starting 2 pkgProblemResolver with broken count: 0 160s Done 160s Solving dependencies... 160s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 160s autopkgtest [16:44:06]: rebooting testbed after setup commands that affected boot 180s autopkgtest [16:44:26]: testbed running kernel: Linux 6.14.0-10-generic #10-Ubuntu SMP Wed Mar 12 14:53:49 UTC 2025 182s autopkgtest [16:44:28]: @@@@@@@@@@@@@@@@@@@@ apt-source phylip 185s Get:1 http://ftpmaster.internal/ubuntu plucky/universe phylip 1:3.697+dfsg-4build1 (dsc) [2253 B] 185s Get:2 http://ftpmaster.internal/ubuntu plucky/universe phylip 1:3.697+dfsg-4build1 (tar) [1163 kB] 185s Get:3 http://ftpmaster.internal/ubuntu plucky/universe phylip 1:3.697+dfsg-4build1 (diff) [13.9 kB] 185s gpgv: Signature made Mon Apr 1 07:09:57 2024 UTC 185s gpgv: using RSA key A089FB36AAFBDAD5ACC1325069F790171A210984 185s gpgv: Can't check signature: No public key 185s dpkg-source: warning: cannot verify inline signature for ./phylip_3.697+dfsg-4build1.dsc: no acceptable signature found 185s autopkgtest [16:44:31]: testing package phylip version 1:3.697+dfsg-4build1 186s autopkgtest [16:44:32]: build not needed 186s autopkgtest [16:44:32]: test run-unit-test: preparing testbed 187s Reading package lists... 187s Building dependency tree... 187s Reading state information... 187s Starting pkgProblemResolver with broken count: 0 187s Starting 2 pkgProblemResolver with broken count: 0 187s Done 187s The following NEW packages will be installed: 187s phylip phylip-doc 187s 0 upgraded, 2 newly installed, 0 to remove and 0 not upgraded. 187s Need to get 1521 kB of archives. 187s After this operation, 4727 kB of additional disk space will be used. 187s Get:1 http://ftpmaster.internal/ubuntu plucky/universe s390x phylip s390x 1:3.697+dfsg-4build1 [1051 kB] 189s Get:2 http://ftpmaster.internal/ubuntu plucky/universe s390x phylip-doc all 1:3.697+dfsg-4build1 [470 kB] 189s Fetched 1521 kB in 2s (798 kB/s) 189s Selecting previously unselected package phylip. 189s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 56326 files and directories currently installed.) 189s Preparing to unpack .../phylip_1%3a3.697+dfsg-4build1_s390x.deb ... 189s Unpacking phylip (1:3.697+dfsg-4build1) ... 189s Selecting previously unselected package phylip-doc. 189s Preparing to unpack .../phylip-doc_1%3a3.697+dfsg-4build1_all.deb ... 189s Unpacking phylip-doc (1:3.697+dfsg-4build1) ... 189s Setting up phylip (1:3.697+dfsg-4build1) ... 189s Setting up phylip-doc (1:3.697+dfsg-4build1) ... 189s Processing triggers for man-db (2.13.0-1) ... 190s Processing triggers for libc-bin (2.41-1ubuntu2) ... 191s autopkgtest [16:44:37]: test run-unit-test: [----------------------- 191s rm -f infile 191s ln -s dna.data infile 191s make testprog PROGRAM=dnapars 191s make[1]: Entering directory '/tmp/autopkgtest.Z8n7Di/autopkgtest_tmp/tests' 191s echo 0 > params 191s echo y >> params 191s phylip dnapars < params > dnapars.out 191s rm -f outtree outfile 191s make[1]: Leaving directory '/tmp/autopkgtest.Z8n7Di/autopkgtest_tmp/tests' 191s make testprog PROGRAM=dnaml 191s make[1]: Entering directory '/tmp/autopkgtest.Z8n7Di/autopkgtest_tmp/tests' 191s echo 0 > params 191s echo y >> params 191s phylip dnaml < params > dnaml.out 191s rm -f outtree outfile 191s make[1]: Leaving directory '/tmp/autopkgtest.Z8n7Di/autopkgtest_tmp/tests' 191s make testprog PROGRAM=dnadist 191s make[1]: Entering directory '/tmp/autopkgtest.Z8n7Di/autopkgtest_tmp/tests' 191s echo 0 > params 191s echo y >> params 191s phylip dnadist < params > dnadist.out 191s rm -f outtree outfile 191s make[1]: Leaving directory '/tmp/autopkgtest.Z8n7Di/autopkgtest_tmp/tests' 191s rm -f infile 191s ln -s prot.data infile 191s make testprog PROGRAM=protpars 191s make[1]: Entering directory '/tmp/autopkgtest.Z8n7Di/autopkgtest_tmp/tests' 191s echo 0 > params 191s echo y >> params 191s phylip protpars < params > protpars.out 191s rm -f outtree outfile 191s make[1]: Leaving directory '/tmp/autopkgtest.Z8n7Di/autopkgtest_tmp/tests' 191s make testprog PROGRAM=protdist 191s make[1]: Entering directory '/tmp/autopkgtest.Z8n7Di/autopkgtest_tmp/tests' 191s echo 0 > params 191s echo y >> params 191s phylip protdist < params > protdist.out 191s rm -f outtree outfile 191s make[1]: Leaving directory '/tmp/autopkgtest.Z8n7Di/autopkgtest_tmp/tests' 191s rm -f infile 191s ln -s distance.data infile 191s make testprog PROGRAM=neighbor 191s make[1]: Entering directory '/tmp/autopkgtest.Z8n7Di/autopkgtest_tmp/tests' 191s echo 0 > params 191s echo y >> params 191s phylip neighbor < params > neighbor.out 191s rm -f outtree outfile 191s make[1]: Leaving directory '/tmp/autopkgtest.Z8n7Di/autopkgtest_tmp/tests' 191s rm -f intree 191s ln -s tree.data intree 191s echo 0 > params 191s echo l >> params 191s echo m >> params 191s echo y >> params 191s echo r >> params 191s phylip drawtree < params > drawtree.out 191s phylip drawgram < params > drawgram.out 191s PASS 191s autopkgtest [16:44:37]: test run-unit-test: -----------------------] 192s autopkgtest [16:44:38]: test run-unit-test: - - - - - - - - - - results - - - - - - - - - - 192s run-unit-test PASS 192s autopkgtest [16:44:38]: @@@@@@@@@@@@@@@@@@@@ summary 192s run-unit-test PASS 199s nova [W] Using flock in prodstack6-s390x 199s flock: timeout while waiting to get lock 199s Creating nova instance adt-plucky-s390x-phylip-20250315-164125-juju-7f2275-prod-proposed-migration-environment-15-971d4a12-21a5-4816-aa3e-64f3bd5f3040 from image adt/ubuntu-plucky-s390x-server-20250315.img (UUID 3d3557fa-fd0f-4bba-9b89-8d5964e09f61)... 199s nova [W] Timed out waiting for b78d25e1-15e9-45b2-be34-1363a6bb1fd6 to get deleted.