0s autopkgtest [16:32:37]: starting date and time: 2025-03-15 16:32:37+0000 0s autopkgtest [16:32:37]: git checkout: 325255d2 Merge branch 'pin-any-arch' into 'ubuntu/production' 0s autopkgtest [16:32:37]: host juju-7f2275-prod-proposed-migration-environment-2; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.6qilb1lt/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:glibc --apt-upgrade pbsim --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=glibc/2.41-1ubuntu2 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest-s390x --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-2@bos03-s390x-31.secgroup --name adt-plucky-s390x-pbsim-20250315-163237-juju-7f2275-prod-proposed-migration-environment-2-4bf036f4-6bc2-4700-9f6d-499c43b6ec92 --image adt/ubuntu-plucky-s390x-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-2 --net-id=net_prod-proposed-migration-s390x -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,keyserver.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com,radosgw.ps5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/ 141s autopkgtest [16:34:58]: testbed dpkg architecture: s390x 142s autopkgtest [16:34:59]: testbed apt version: 2.9.33 142s autopkgtest [16:34:59]: @@@@@@@@@@@@@@@@@@@@ test bed setup 142s autopkgtest [16:34:59]: testbed release detected to be: None 143s autopkgtest [16:35:00]: updating testbed package index (apt update) 143s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease [126 kB] 144s Hit:2 http://ftpmaster.internal/ubuntu plucky InRelease 144s Hit:3 http://ftpmaster.internal/ubuntu plucky-updates InRelease 144s Hit:4 http://ftpmaster.internal/ubuntu plucky-security InRelease 144s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse Sources [15.8 kB] 144s Get:6 http://ftpmaster.internal/ubuntu plucky-proposed/universe Sources [379 kB] 144s Get:7 http://ftpmaster.internal/ubuntu plucky-proposed/main Sources [99.7 kB] 144s Get:8 http://ftpmaster.internal/ubuntu plucky-proposed/main s390x Packages [113 kB] 145s Get:9 http://ftpmaster.internal/ubuntu plucky-proposed/main s390x c-n-f Metadata [1824 B] 145s Get:10 http://ftpmaster.internal/ubuntu plucky-proposed/restricted s390x c-n-f Metadata [116 B] 145s Get:11 http://ftpmaster.internal/ubuntu plucky-proposed/universe s390x Packages [320 kB] 145s Get:12 http://ftpmaster.internal/ubuntu plucky-proposed/universe s390x c-n-f Metadata [13.4 kB] 145s Get:13 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse s390x Packages [3776 B] 145s Get:14 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse s390x c-n-f Metadata [240 B] 145s Fetched 1073 kB in 2s (552 kB/s) 146s Reading package lists... 146s Reading package lists... 146s Building dependency tree... 146s Reading state information... 147s Calculating upgrade... 147s Calculating upgrade... 147s The following packages were automatically installed and are no longer required: 147s libnsl2 libpython3.12-minimal libpython3.12-stdlib libpython3.12t64 147s linux-headers-6.11.0-8 linux-headers-6.11.0-8-generic 147s linux-modules-6.11.0-8-generic linux-tools-6.11.0-8 147s linux-tools-6.11.0-8-generic 147s Use 'sudo apt autoremove' to remove them. 147s The following packages will be upgraded: 147s pinentry-curses python3-jinja2 strace 147s 3 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 147s Need to get 652 kB of archives. 147s After this operation, 27.6 kB of additional disk space will be used. 147s Get:1 http://ftpmaster.internal/ubuntu plucky/main s390x strace s390x 6.13+ds-1ubuntu1 [500 kB] 148s Get:2 http://ftpmaster.internal/ubuntu plucky/main s390x pinentry-curses s390x 1.3.1-2ubuntu3 [42.9 kB] 148s Get:3 http://ftpmaster.internal/ubuntu plucky/main s390x python3-jinja2 all 3.1.5-2ubuntu1 [109 kB] 148s Fetched 652 kB in 1s (490 kB/s) 148s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 81428 files and directories currently installed.) 148s Preparing to unpack .../strace_6.13+ds-1ubuntu1_s390x.deb ... 148s Unpacking strace (6.13+ds-1ubuntu1) over (6.11-0ubuntu1) ... 148s Preparing to unpack .../pinentry-curses_1.3.1-2ubuntu3_s390x.deb ... 148s Unpacking pinentry-curses (1.3.1-2ubuntu3) over (1.3.1-2ubuntu2) ... 148s Preparing to unpack .../python3-jinja2_3.1.5-2ubuntu1_all.deb ... 149s Unpacking python3-jinja2 (3.1.5-2ubuntu1) over (3.1.5-2) ... 149s Setting up pinentry-curses (1.3.1-2ubuntu3) ... 149s Setting up python3-jinja2 (3.1.5-2ubuntu1) ... 149s Setting up strace (6.13+ds-1ubuntu1) ... 149s Processing triggers for man-db (2.13.0-1) ... 149s Reading package lists... 149s Building dependency tree... 149s Reading state information... 149s Solving dependencies... 150s The following packages will be REMOVED: 150s libnsl2* libpython3.12-minimal* libpython3.12-stdlib* libpython3.12t64* 150s linux-headers-6.11.0-8* linux-headers-6.11.0-8-generic* 150s linux-modules-6.11.0-8-generic* linux-tools-6.11.0-8* 150s linux-tools-6.11.0-8-generic* 150s 0 upgraded, 0 newly installed, 9 to remove and 5 not upgraded. 150s After this operation, 167 MB disk space will be freed. 150s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 81428 files and directories currently installed.) 150s Removing linux-tools-6.11.0-8-generic (6.11.0-8.8) ... 150s Removing linux-tools-6.11.0-8 (6.11.0-8.8) ... 150s Removing libpython3.12t64:s390x (3.12.9-1) ... 150s Removing libpython3.12-stdlib:s390x (3.12.9-1) ... 150s Removing libnsl2:s390x (1.3.0-3build3) ... 150s Removing libpython3.12-minimal:s390x (3.12.9-1) ... 150s Removing linux-headers-6.11.0-8-generic (6.11.0-8.8) ... 150s Removing linux-headers-6.11.0-8 (6.11.0-8.8) ... 151s Removing linux-modules-6.11.0-8-generic (6.11.0-8.8) ... 151s Processing triggers for libc-bin (2.41-1ubuntu1) ... 151s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 56328 files and directories currently installed.) 151s Purging configuration files for libpython3.12-minimal:s390x (3.12.9-1) ... 151s Purging configuration files for linux-modules-6.11.0-8-generic (6.11.0-8.8) ... 151s autopkgtest [16:35:08]: upgrading testbed (apt dist-upgrade and autopurge) 151s Reading package lists... 151s Building dependency tree... 151s Reading state information... 151s Calculating upgrade...Starting pkgProblemResolver with broken count: 0 151s Starting 2 pkgProblemResolver with broken count: 0 151s Done 152s Entering ResolveByKeep 152s 152s Calculating upgrade... 152s The following packages will be upgraded: 152s libc-bin libc-dev-bin libc6 libc6-dev locales 152s 5 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 152s Need to get 9512 kB of archives. 152s After this operation, 8192 B of additional disk space will be used. 152s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed/main s390x libc6-dev s390x 2.41-1ubuntu2 [1678 kB] 154s Get:2 http://ftpmaster.internal/ubuntu plucky-proposed/main s390x libc-dev-bin s390x 2.41-1ubuntu2 [24.3 kB] 154s Get:3 http://ftpmaster.internal/ubuntu plucky-proposed/main s390x libc6 s390x 2.41-1ubuntu2 [2892 kB] 158s Get:4 http://ftpmaster.internal/ubuntu plucky-proposed/main s390x libc-bin s390x 2.41-1ubuntu2 [671 kB] 159s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/main s390x locales all 2.41-1ubuntu2 [4246 kB] 164s Preconfiguring packages ... 164s Fetched 9512 kB in 12s (817 kB/s) 164s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 56326 files and directories currently installed.) 164s Preparing to unpack .../libc6-dev_2.41-1ubuntu2_s390x.deb ... 164s Unpacking libc6-dev:s390x (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 164s Preparing to unpack .../libc-dev-bin_2.41-1ubuntu2_s390x.deb ... 164s Unpacking libc-dev-bin (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 164s Preparing to unpack .../libc6_2.41-1ubuntu2_s390x.deb ... 164s Unpacking libc6:s390x (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 164s Setting up libc6:s390x (2.41-1ubuntu2) ... 164s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 56326 files and directories currently installed.) 164s Preparing to unpack .../libc-bin_2.41-1ubuntu2_s390x.deb ... 164s Unpacking libc-bin (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 164s Setting up libc-bin (2.41-1ubuntu2) ... 164s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 56326 files and directories currently installed.) 164s Preparing to unpack .../locales_2.41-1ubuntu2_all.deb ... 164s Unpacking locales (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 164s Setting up locales (2.41-1ubuntu2) ... 165s Generating locales (this might take a while)... 165s en_US.UTF-8... done 165s Generation complete. 165s Setting up libc-dev-bin (2.41-1ubuntu2) ... 165s Setting up libc6-dev:s390x (2.41-1ubuntu2) ... 165s Processing triggers for man-db (2.13.0-1) ... 166s Processing triggers for systemd (257.3-1ubuntu3) ... 167s Reading package lists... 167s Building dependency tree... 167s Reading state information... 167s Starting pkgProblemResolver with broken count: 0 167s Starting 2 pkgProblemResolver with broken count: 0 167s Done 167s Solving dependencies... 167s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 168s autopkgtest [16:35:25]: rebooting testbed after setup commands that affected boot 187s autopkgtest [16:35:44]: testbed running kernel: Linux 6.14.0-10-generic #10-Ubuntu SMP Wed Mar 12 14:53:49 UTC 2025 190s autopkgtest [16:35:47]: @@@@@@@@@@@@@@@@@@@@ apt-source pbsim 198s Get:1 http://ftpmaster.internal/ubuntu plucky/universe pbsim 1.0.3+git20180330.e014b1d+dfsg-3 (dsc) [2138 B] 198s Get:2 http://ftpmaster.internal/ubuntu plucky/universe pbsim 1.0.3+git20180330.e014b1d+dfsg-3 (tar) [5305 kB] 198s Get:3 http://ftpmaster.internal/ubuntu plucky/universe pbsim 1.0.3+git20180330.e014b1d+dfsg-3 (diff) [80.2 kB] 198s gpgv: Signature made Wed Mar 1 06:56:30 2023 UTC 198s gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 198s gpgv: issuer "tille@debian.org" 198s gpgv: Can't check signature: No public key 198s dpkg-source: warning: cannot verify inline signature for ./pbsim_1.0.3+git20180330.e014b1d+dfsg-3.dsc: no acceptable signature found 199s autopkgtest [16:35:56]: testing package pbsim version 1.0.3+git20180330.e014b1d+dfsg-3 199s autopkgtest [16:35:56]: build not needed 200s autopkgtest [16:35:57]: test run: preparing testbed 200s Reading package lists... 200s Building dependency tree... 200s Reading state information... 201s Starting pkgProblemResolver with broken count: 0 201s Starting 2 pkgProblemResolver with broken count: 0 201s Done 201s The following NEW packages will be installed: 201s pbsim 201s 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. 201s Need to get 26.1 kB of archives. 201s After this operation, 97.3 kB of additional disk space will be used. 201s Get:1 http://ftpmaster.internal/ubuntu plucky/universe s390x pbsim s390x 1.0.3+git20180330.e014b1d+dfsg-3 [26.1 kB] 201s Fetched 26.1 kB in 0s (112 kB/s) 201s Selecting previously unselected package pbsim. 201s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 56326 files and directories currently installed.) 201s Preparing to unpack .../pbsim_1.0.3+git20180330.e014b1d+dfsg-3_s390x.deb ... 201s Unpacking pbsim (1.0.3+git20180330.e014b1d+dfsg-3) ... 201s Setting up pbsim (1.0.3+git20180330.e014b1d+dfsg-3) ... 201s Processing triggers for man-db (2.13.0-1) ... 203s autopkgtest [16:36:00]: test run: [----------------------- 203s :::: Simulation parameters ::: 203s 203s Simulated by stochastic model. 203s 203s prefix : sd 203s data-type : CLR 203s depth : 20.000000 203s length-mean : 3000.000000 203s length-sd : 2300.000000 203s length-min : 100 203s length-max : 25000 203s accuracy-mean : 0.780000 203s accuracy-sd : 0.020000 203s accuracy-min : 0.750000 203s accuracy-max : 1.000000 203s difference-ratio : 10:60:30 203s 203s !! ref file /tmp/autopkgtest.52jMeb/build.2gL/src/sample/sample.fasta 203s :::: Reference stats :::: 203s 203s file name : /tmp/autopkgtest.52jMeb/build.2gL/src/sample/sample.fasta 203s 203s ref.1 (len:5154862) : sample 203s 209s :::: Simulation stats (ref.1 - name: sample) :::: 209s 209s read num. : 34169 209s depth : 20.000000 209s read length mean (SD) : 3017.274137 (2274.627044) 209s read length min : 181 209s read length max : 24651 209s read accuracy mean (SD) : 0.781598 (0.018689) 209s substitution rate. : 0.021865 209s insertion rate. : 0.131021 209s deletion rate. : 0.065946 209s 209s :::: System utilization :::: 209s 209s CPU time(s) : 5 209s Elapsed time(s) : 6 209s run: OK 209s autopkgtest [16:36:06]: test run: -----------------------] 209s autopkgtest [16:36:06]: test run: - - - - - - - - - - results - - - - - - - - - - 209s run PASS 210s autopkgtest [16:36:07]: @@@@@@@@@@@@@@@@@@@@ summary 210s run PASS 215s nova [W] Using flock in prodstack6-s390x 215s Creating nova instance adt-plucky-s390x-pbsim-20250315-163237-juju-7f2275-prod-proposed-migration-environment-2-4bf036f4-6bc2-4700-9f6d-499c43b6ec92 from image adt/ubuntu-plucky-s390x-server-20250315.img (UUID 3d3557fa-fd0f-4bba-9b89-8d5964e09f61)... 215s nova [W] Timed out waiting for 7bf1e99f-4f48-4b2a-8a18-3adee829d3c0 to get deleted.