0s autopkgtest [16:15:38]: starting date and time: 2025-03-15 16:15:38+0000 0s autopkgtest [16:15:38]: git checkout: 325255d2 Merge branch 'pin-any-arch' into 'ubuntu/production' 0s autopkgtest [16:15:38]: host juju-7f2275-prod-proposed-migration-environment-15; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.arkl52o2/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:glibc --apt-upgrade openbabel --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=glibc/2.41-1ubuntu2 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest-s390x --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-15@bos03-s390x-10.secgroup --name adt-plucky-s390x-openbabel-20250315-161537-juju-7f2275-prod-proposed-migration-environment-15-5f3e26fd-e8fd-4726-9870-09d9cfe0fba6 --image adt/ubuntu-plucky-s390x-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-15 --net-id=net_prod-proposed-migration-s390x -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,keyserver.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com,radosgw.ps5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/ 157s autopkgtest [16:18:15]: testbed dpkg architecture: s390x 157s autopkgtest [16:18:15]: testbed apt version: 2.9.33 157s autopkgtest [16:18:15]: @@@@@@@@@@@@@@@@@@@@ test bed setup 158s autopkgtest [16:18:16]: testbed release detected to be: None 159s autopkgtest [16:18:17]: updating testbed package index (apt update) 159s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease [126 kB] 159s Hit:2 http://ftpmaster.internal/ubuntu plucky InRelease 159s Hit:3 http://ftpmaster.internal/ubuntu plucky-updates InRelease 159s Hit:4 http://ftpmaster.internal/ubuntu plucky-security InRelease 159s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse Sources [15.8 kB] 159s Get:6 http://ftpmaster.internal/ubuntu plucky-proposed/universe Sources [379 kB] 160s Get:7 http://ftpmaster.internal/ubuntu plucky-proposed/main Sources [99.7 kB] 160s Get:8 http://ftpmaster.internal/ubuntu plucky-proposed/main s390x Packages [113 kB] 160s Get:9 http://ftpmaster.internal/ubuntu plucky-proposed/main s390x c-n-f Metadata [1824 B] 160s Get:10 http://ftpmaster.internal/ubuntu plucky-proposed/restricted s390x c-n-f Metadata [116 B] 160s Get:11 http://ftpmaster.internal/ubuntu plucky-proposed/universe s390x Packages [320 kB] 160s Get:12 http://ftpmaster.internal/ubuntu plucky-proposed/universe s390x c-n-f Metadata [13.4 kB] 160s Get:13 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse s390x Packages [3776 B] 160s Get:14 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse s390x c-n-f Metadata [240 B] 161s Fetched 1073 kB in 2s (671 kB/s) 161s Reading package lists... 162s + lsb_release --codename --short 162s + RELEASE=plucky 162s + cat 162s + [ plucky != trusty ] 162s + DEBIAN_FRONTEND=noninteractive eatmydata apt-get -y --allow-downgrades -o Dpkg::Options::=--force-confnew dist-upgrade 162s Reading package lists... 162s Building dependency tree... 162s Reading state information... 162s Calculating upgrade... 162s Calculating upgrade... 162s The following packages were automatically installed and are no longer required: 162s libnsl2 libpython3.12-minimal libpython3.12-stdlib libpython3.12t64 162s linux-headers-6.11.0-8 linux-headers-6.11.0-8-generic 162s linux-modules-6.11.0-8-generic linux-tools-6.11.0-8 162s linux-tools-6.11.0-8-generic 162s Use 'sudo apt autoremove' to remove them. 162s The following packages will be upgraded: 162s pinentry-curses python3-jinja2 strace 162s 3 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 162s Need to get 652 kB of archives. 162s After this operation, 27.6 kB of additional disk space will be used. 162s Get:1 http://ftpmaster.internal/ubuntu plucky/main s390x strace s390x 6.13+ds-1ubuntu1 [500 kB] 163s Get:2 http://ftpmaster.internal/ubuntu plucky/main s390x pinentry-curses s390x 1.3.1-2ubuntu3 [42.9 kB] 163s Get:3 http://ftpmaster.internal/ubuntu plucky/main s390x python3-jinja2 all 3.1.5-2ubuntu1 [109 kB] 163s Fetched 652 kB in 1s (651 kB/s) 164s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 81428 files and directories currently installed.) 164s Preparing to unpack .../strace_6.13+ds-1ubuntu1_s390x.deb ... 164s Unpacking strace (6.13+ds-1ubuntu1) over (6.11-0ubuntu1) ... 164s Preparing to unpack .../pinentry-curses_1.3.1-2ubuntu3_s390x.deb ... 164s Unpacking pinentry-curses (1.3.1-2ubuntu3) over (1.3.1-2ubuntu2) ... 164s Preparing to unpack .../python3-jinja2_3.1.5-2ubuntu1_all.deb ... 164s Unpacking python3-jinja2 (3.1.5-2ubuntu1) over (3.1.5-2) ... 164s Setting up pinentry-curses (1.3.1-2ubuntu3) ... 164s Setting up python3-jinja2 (3.1.5-2ubuntu1) ... 164s Setting up strace (6.13+ds-1ubuntu1) ... 164s Processing triggers for man-db (2.13.0-1) ... 165s + rm /etc/apt/preferences.d/force-downgrade-to-release.pref 165s + /usr/lib/apt/apt-helper analyze-pattern ?true 165s + + sed s/\./\\./g 165s uname -r 165s + running_kernel_pattern=^linux-.*6\.14\.0-10-generic.* 165s + apt list ?obsolete 165s + tail -n+2 165s + cut -d/ -f1 165s + grep -v ^linux-.*6\.14\.0-10-generic.* 165s + obsolete_pkgs=linux-headers-6.11.0-8-generic 165s linux-headers-6.11.0-8 165s linux-modules-6.11.0-8-generic 165s linux-tools-6.11.0-8-generic 165s linux-tools-6.11.0-8 165s + DEBIAN_FRONTEND=noninteractive eatmydata apt-get -y purge --autoremove linux-headers-6.11.0-8-generic linux-headers-6.11.0-8 linux-modules-6.11.0-8-generic linux-tools-6.11.0-8-generic linux-tools-6.11.0-8 165s Reading package lists... 165s Building dependency tree... 165s Reading state information... 165s Solving dependencies... 165s The following packages will be REMOVED: 165s libnsl2* libpython3.12-minimal* libpython3.12-stdlib* libpython3.12t64* 165s linux-headers-6.11.0-8* linux-headers-6.11.0-8-generic* 165s linux-modules-6.11.0-8-generic* linux-tools-6.11.0-8* 165s linux-tools-6.11.0-8-generic* 165s 0 upgraded, 0 newly installed, 9 to remove and 5 not upgraded. 165s After this operation, 167 MB disk space will be freed. 165s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 81428 files and directories currently installed.) 165s Removing linux-tools-6.11.0-8-generic (6.11.0-8.8) ... 165s Removing linux-tools-6.11.0-8 (6.11.0-8.8) ... 165s Removing libpython3.12t64:s390x (3.12.9-1) ... 165s Removing libpython3.12-stdlib:s390x (3.12.9-1) ... 165s Removing libnsl2:s390x (1.3.0-3build3) ... 165s Removing libpython3.12-minimal:s390x (3.12.9-1) ... 165s Removing linux-headers-6.11.0-8-generic (6.11.0-8.8) ... 165s Removing linux-headers-6.11.0-8 (6.11.0-8.8) ... 166s Removing linux-modules-6.11.0-8-generic (6.11.0-8.8) ... 167s Processing triggers for libc-bin (2.41-1ubuntu1) ... 167s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 56328 files and directories currently installed.) 167s Purging configuration files for libpython3.12-minimal:s390x (3.12.9-1) ... 167s Purging configuration files for linux-modules-6.11.0-8-generic (6.11.0-8.8) ... 167s + grep -q trusty /etc/lsb-release 167s + [ ! -d /usr/share/doc/unattended-upgrades ] 167s + [ ! -d /usr/share/doc/lxd ] 167s + [ ! -d /usr/share/doc/lxd-client ] 167s + [ ! -d /usr/share/doc/snapd ] 167s + type iptables 167s + cat 167s + chmod 755 /etc/rc.local 167s + . /etc/rc.local 167s + iptables -w -t mangle -A FORWARD -p tcp --tcp-flags SYN,RST SYN -j TCPMSS --clamp-mss-to-pmtu 167s + iptables -A OUTPUT -d 10.255.255.1/32 -p tcp -j DROP 167s + iptables -A OUTPUT -d 10.255.255.2/32 -p tcp -j DROP 167s + uname -m 167s + [ s390x = ppc64le ] 167s + [ -d /run/systemd/system ] 167s + systemd-detect-virt --quiet --vm 167s + mkdir -p /etc/systemd/system/systemd-random-seed.service.d/ 167s + cat 167s + grep -q lz4 /etc/initramfs-tools/initramfs.conf 167s + echo COMPRESS=lz4 167s autopkgtest [16:18:25]: upgrading testbed (apt dist-upgrade and autopurge) 167s Reading package lists... 167s Building dependency tree... 167s Reading state information... 167s Calculating upgrade...Starting pkgProblemResolver with broken count: 0 167s Starting 2 pkgProblemResolver with broken count: 0 167s Done 168s Entering ResolveByKeep 168s 168s Calculating upgrade... 168s The following packages will be upgraded: 168s libc-bin libc-dev-bin libc6 libc6-dev locales 168s 5 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 168s Need to get 9512 kB of archives. 168s After this operation, 8192 B of additional disk space will be used. 168s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed/main s390x libc6-dev s390x 2.41-1ubuntu2 [1678 kB] 170s Get:2 http://ftpmaster.internal/ubuntu plucky-proposed/main s390x libc-dev-bin s390x 2.41-1ubuntu2 [24.3 kB] 170s Get:3 http://ftpmaster.internal/ubuntu plucky-proposed/main s390x libc6 s390x 2.41-1ubuntu2 [2892 kB] 173s Get:4 http://ftpmaster.internal/ubuntu plucky-proposed/main s390x libc-bin s390x 2.41-1ubuntu2 [671 kB] 173s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/main s390x locales all 2.41-1ubuntu2 [4246 kB] 178s Preconfiguring packages ... 178s Fetched 9512 kB in 10s (950 kB/s) 178s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 56326 files and directories currently installed.) 178s Preparing to unpack .../libc6-dev_2.41-1ubuntu2_s390x.deb ... 178s Unpacking libc6-dev:s390x (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 178s Preparing to unpack .../libc-dev-bin_2.41-1ubuntu2_s390x.deb ... 178s Unpacking libc-dev-bin (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 178s Preparing to unpack .../libc6_2.41-1ubuntu2_s390x.deb ... 178s Unpacking libc6:s390x (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 178s Setting up libc6:s390x (2.41-1ubuntu2) ... 178s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 56326 files and directories currently installed.) 178s Preparing to unpack .../libc-bin_2.41-1ubuntu2_s390x.deb ... 178s Unpacking libc-bin (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 179s Setting up libc-bin (2.41-1ubuntu2) ... 179s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 56326 files and directories currently installed.) 179s Preparing to unpack .../locales_2.41-1ubuntu2_all.deb ... 179s Unpacking locales (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 179s Setting up locales (2.41-1ubuntu2) ... 179s Generating locales (this might take a while)... 180s en_US.UTF-8... done 180s Generation complete. 180s Setting up libc-dev-bin (2.41-1ubuntu2) ... 180s Setting up libc6-dev:s390x (2.41-1ubuntu2) ... 180s Processing triggers for man-db (2.13.0-1) ... 181s Processing triggers for systemd (257.3-1ubuntu3) ... 182s Reading package lists... 182s Building dependency tree... 182s Reading state information... 182s Starting pkgProblemResolver with broken count: 0 182s Starting 2 pkgProblemResolver with broken count: 0 182s Done 182s Solving dependencies... 182s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 183s autopkgtest [16:18:41]: rebooting testbed after setup commands that affected boot 201s autopkgtest [16:18:59]: testbed running kernel: Linux 6.14.0-10-generic #10-Ubuntu SMP Wed Mar 12 14:53:49 UTC 2025 203s autopkgtest [16:19:01]: @@@@@@@@@@@@@@@@@@@@ apt-source openbabel 229s Get:1 http://ftpmaster.internal/ubuntu plucky/universe openbabel 3.1.1+dfsg-11ubuntu3 (dsc) [2896 B] 229s Get:2 http://ftpmaster.internal/ubuntu plucky/universe openbabel 3.1.1+dfsg-11ubuntu3 (tar) [21.8 MB] 229s Get:3 http://ftpmaster.internal/ubuntu plucky/universe openbabel 3.1.1+dfsg-11ubuntu3 (diff) [22.1 kB] 229s gpgv: Signature made Fri Jan 3 13:45:31 2025 UTC 229s gpgv: using RSA key 568BF22A66337CBFC9A6B9B72C83DBC8E9BD0E37 229s gpgv: Can't check signature: No public key 229s dpkg-source: warning: cannot verify inline signature for ./openbabel_3.1.1+dfsg-11ubuntu3.dsc: no acceptable signature found 231s dpkg-source: warning: diff 'src/debian/patches/2315.patch' patches file src/src/CMakeLists.txt more than once 231s dpkg-source: warning: diff 'src/debian/patches/2315.patch' patches file src/CMakeLists.txt more than once 231s dpkg-source: warning: diff 'src/debian/patches/2315.patch' patches file src/OpenBabel3Config.cmake.in more than once 232s autopkgtest [16:19:30]: testing package openbabel version 3.1.1+dfsg-11ubuntu3 233s autopkgtest [16:19:31]: build not needed 251s autopkgtest [16:19:49]: test python3: preparing testbed 252s Reading package lists... 252s Building dependency tree... 252s Reading state information... 252s Starting pkgProblemResolver with broken count: 0 252s Starting 2 pkgProblemResolver with broken count: 0 252s Done 252s The following NEW packages will be installed: 252s adwaita-icon-theme at-spi2-common dconf-gsettings-backend dconf-service 252s fontconfig fontconfig-config fonts-dejavu-core fonts-dejavu-mono 252s gtk-update-icon-cache hicolor-icon-theme libatk-bridge2.0-0t64 252s libatk1.0-0t64 libatspi2.0-0t64 libavahi-client3 libavahi-common-data 252s libavahi-common3 libboost-iostreams1.83.0 libcairo-gobject2 libcairo2 252s libchemistry-openbabel-perl libcolord2 libcups2t64 libdatrie1 libdconf1 252s libdeflate0 libepoxy0 libfontconfig1 libfreetype6 libgdk-pixbuf-2.0-0 252s libgdk-pixbuf2.0-common libgomp1 libgraphite2-3 libgtk-3-0t64 252s libgtk-3-common libharfbuzz0b libice6 libinchi1.07 libjbig0 libjpeg-turbo8 252s libjpeg8 libjs-jquery liblcms2-2 libmaeparser1 libnotify4 libopenbabel-dev 252s libopenbabel-doc libopenbabel7 libpango-1.0-0 libpangocairo-1.0-0 252s libpangoft2-1.0-0 libpcre2-32-0 libpixman-1-0 libsharpyuv0 libsm6 252s libthai-data libthai0 libtiff6 libwayland-client0 libwayland-cursor0 252s libwayland-egl1 libwebp7 libwxbase3.2-1t64 libwxgtk3.2-1t64 libxcb-render0 252s libxcb-shm0 libxcomposite1 libxcursor1 libxdamage1 libxfixes3 libxi6 252s libxinerama1 libxrandr2 libxrender1 libxtst6 openbabel openbabel-gui 252s python3-openbabel x11-common 252s 0 upgraded, 78 newly installed, 0 to remove and 0 not upgraded. 252s Need to get 29.8 MB of archives. 252s After this operation, 126 MB of additional disk space will be used. 252s Get:1 http://ftpmaster.internal/ubuntu plucky/main s390x libgdk-pixbuf2.0-common all 2.42.12+dfsg-2 [8004 B] 252s Get:2 http://ftpmaster.internal/ubuntu plucky/main s390x libjpeg-turbo8 s390x 2.1.5-3ubuntu2 [147 kB] 253s Get:3 http://ftpmaster.internal/ubuntu plucky/main s390x libjpeg8 s390x 8c-2ubuntu11 [2146 B] 253s Get:4 http://ftpmaster.internal/ubuntu plucky/main s390x libdeflate0 s390x 1.23-1 [46.1 kB] 253s Get:5 http://ftpmaster.internal/ubuntu plucky/main s390x libjbig0 s390x 2.1-6.1ubuntu2 [33.1 kB] 253s Get:6 http://ftpmaster.internal/ubuntu plucky/main s390x libsharpyuv0 s390x 1.5.0-0.1 [16.7 kB] 253s Get:7 http://ftpmaster.internal/ubuntu plucky/main s390x libwebp7 s390x 1.5.0-0.1 [210 kB] 253s Get:8 http://ftpmaster.internal/ubuntu plucky/main s390x libtiff6 s390x 4.5.1+git230720-4ubuntu4 [217 kB] 253s Get:9 http://ftpmaster.internal/ubuntu plucky/main s390x libgdk-pixbuf-2.0-0 s390x 2.42.12+dfsg-2 [154 kB] 253s Get:10 http://ftpmaster.internal/ubuntu plucky/main s390x gtk-update-icon-cache s390x 4.17.5+ds-3ubuntu1 [53.2 kB] 253s Get:11 http://ftpmaster.internal/ubuntu plucky/main s390x hicolor-icon-theme all 0.18-2 [13.3 kB] 253s Get:12 http://ftpmaster.internal/ubuntu plucky/main s390x adwaita-icon-theme all 48.0-1 [578 kB] 254s Get:13 http://ftpmaster.internal/ubuntu plucky/main s390x at-spi2-common all 2.55.90-1 [9072 B] 254s Get:14 http://ftpmaster.internal/ubuntu plucky/main s390x libdconf1 s390x 0.40.0-5 [40.0 kB] 254s Get:15 http://ftpmaster.internal/ubuntu plucky/main s390x dconf-service s390x 0.40.0-5 [28.4 kB] 254s Get:16 http://ftpmaster.internal/ubuntu plucky/main s390x dconf-gsettings-backend s390x 0.40.0-5 [22.8 kB] 254s Get:17 http://ftpmaster.internal/ubuntu plucky/main s390x libfreetype6 s390x 2.13.3+dfsg-1 [431 kB] 255s Get:18 http://ftpmaster.internal/ubuntu plucky/main s390x fonts-dejavu-mono all 2.37-8 [502 kB] 255s Get:19 http://ftpmaster.internal/ubuntu plucky/main s390x fonts-dejavu-core all 2.37-8 [835 kB] 256s Get:20 http://ftpmaster.internal/ubuntu plucky/main s390x fontconfig-config s390x 2.15.0-2ubuntu1 [37.5 kB] 256s Get:21 http://ftpmaster.internal/ubuntu plucky/main s390x libfontconfig1 s390x 2.15.0-2ubuntu1 [150 kB] 256s Get:22 http://ftpmaster.internal/ubuntu plucky/main s390x fontconfig s390x 2.15.0-2ubuntu1 [191 kB] 256s Get:23 http://ftpmaster.internal/ubuntu plucky/main s390x libatk1.0-0t64 s390x 2.55.90-1 [54.9 kB] 256s Get:24 http://ftpmaster.internal/ubuntu plucky/main s390x libxi6 s390x 2:1.8.2-1 [35.4 kB] 256s Get:25 http://ftpmaster.internal/ubuntu plucky/main s390x libatspi2.0-0t64 s390x 2.55.90-1 [83.8 kB] 256s Get:26 http://ftpmaster.internal/ubuntu plucky/main s390x libatk-bridge2.0-0t64 s390x 2.55.90-1 [66.7 kB] 256s Get:27 http://ftpmaster.internal/ubuntu plucky/main s390x libavahi-common-data s390x 0.8-16ubuntu1 [30.9 kB] 257s Get:28 http://ftpmaster.internal/ubuntu plucky/main s390x libavahi-common3 s390x 0.8-16ubuntu1 [23.5 kB] 257s Get:29 http://ftpmaster.internal/ubuntu plucky/main s390x libavahi-client3 s390x 0.8-16ubuntu1 [26.3 kB] 257s Get:30 http://ftpmaster.internal/ubuntu plucky/main s390x libboost-iostreams1.83.0 s390x 1.83.0-4.1ubuntu2 [259 kB] 257s Get:31 http://ftpmaster.internal/ubuntu plucky/main s390x libpixman-1-0 s390x 0.44.0-3 [201 kB] 257s Get:32 http://ftpmaster.internal/ubuntu plucky/main s390x libxcb-render0 s390x 1.17.0-2 [17.0 kB] 257s Get:33 http://ftpmaster.internal/ubuntu plucky/main s390x libxcb-shm0 s390x 1.17.0-2 [5862 B] 257s Get:34 http://ftpmaster.internal/ubuntu plucky/main s390x libxrender1 s390x 1:0.9.10-1.1build1 [20.4 kB] 257s Get:35 http://ftpmaster.internal/ubuntu plucky/main s390x libcairo2 s390x 1.18.2-2 [580 kB] 258s Get:36 http://ftpmaster.internal/ubuntu plucky/main s390x libcairo-gobject2 s390x 1.18.2-2 [127 kB] 258s Get:37 http://ftpmaster.internal/ubuntu plucky/main s390x libgomp1 s390x 15-20250222-0ubuntu1 [152 kB] 258s Get:38 http://ftpmaster.internal/ubuntu plucky/universe s390x libinchi1.07 s390x 1.07.3+dfsg-1 [654 kB] 258s Get:39 http://ftpmaster.internal/ubuntu plucky/universe s390x libmaeparser1 s390x 1.3.1-1build1 [107 kB] 259s Get:40 http://ftpmaster.internal/ubuntu plucky/universe s390x libopenbabel7 s390x 3.1.1+dfsg-11ubuntu3 [3457 kB] 262s Get:41 http://ftpmaster.internal/ubuntu plucky/universe s390x libchemistry-openbabel-perl s390x 3.1.1+dfsg-11ubuntu3 [767 kB] 262s Get:42 http://ftpmaster.internal/ubuntu plucky/main s390x liblcms2-2 s390x 2.16-2 [175 kB] 263s Get:43 http://ftpmaster.internal/ubuntu plucky/main s390x libcolord2 s390x 1.4.7-3 [149 kB] 263s Get:44 http://ftpmaster.internal/ubuntu plucky/main s390x libcups2t64 s390x 2.4.11-0ubuntu2 [282 kB] 263s Get:45 http://ftpmaster.internal/ubuntu plucky/main s390x libdatrie1 s390x 0.2.13-3build1 [20.6 kB] 263s Get:46 http://ftpmaster.internal/ubuntu plucky/main s390x libepoxy0 s390x 1.5.10-2 [222 kB] 263s Get:47 http://ftpmaster.internal/ubuntu plucky/main s390x libgraphite2-3 s390x 1.3.14-2ubuntu1 [79.8 kB] 263s Get:48 http://ftpmaster.internal/ubuntu plucky/main s390x libharfbuzz0b s390x 10.2.0-1 [538 kB] 264s Get:49 http://ftpmaster.internal/ubuntu plucky/main s390x libthai-data all 0.1.29-2build1 [158 kB] 264s Get:50 http://ftpmaster.internal/ubuntu plucky/main s390x libthai0 s390x 0.1.29-2build1 [20.7 kB] 264s Get:51 http://ftpmaster.internal/ubuntu plucky/main s390x libpango-1.0-0 s390x 1.56.2-1 [253 kB] 265s Get:52 http://ftpmaster.internal/ubuntu plucky/main s390x libpangoft2-1.0-0 s390x 1.56.2-1 [50.2 kB] 265s Get:53 http://ftpmaster.internal/ubuntu plucky/main s390x libpangocairo-1.0-0 s390x 1.56.2-1 [28.2 kB] 265s Get:54 http://ftpmaster.internal/ubuntu plucky/main s390x libwayland-client0 s390x 1.23.1-3 [28.2 kB] 265s Get:55 http://ftpmaster.internal/ubuntu plucky/main s390x libwayland-cursor0 s390x 1.23.1-3 [11.5 kB] 265s Get:56 http://ftpmaster.internal/ubuntu plucky/main s390x libwayland-egl1 s390x 1.23.1-3 [6078 B] 265s Get:57 http://ftpmaster.internal/ubuntu plucky/main s390x libxcomposite1 s390x 1:0.4.6-1 [6588 B] 265s Get:58 http://ftpmaster.internal/ubuntu plucky/main s390x libxfixes3 s390x 1:6.0.0-2build1 [11.3 kB] 265s Get:59 http://ftpmaster.internal/ubuntu plucky/main s390x libxcursor1 s390x 1:1.2.3-1 [23.4 kB] 265s Get:60 http://ftpmaster.internal/ubuntu plucky/main s390x libxdamage1 s390x 1:1.1.6-1build1 [6156 B] 265s Get:61 http://ftpmaster.internal/ubuntu plucky/main s390x libxinerama1 s390x 2:1.1.4-3build1 [6476 B] 265s Get:62 http://ftpmaster.internal/ubuntu plucky/main s390x libxrandr2 s390x 2:1.5.4-1 [20.8 kB] 265s Get:63 http://ftpmaster.internal/ubuntu plucky/main s390x libgtk-3-common all 3.24.48-3ubuntu1 [1424 kB] 267s Get:64 http://ftpmaster.internal/ubuntu plucky/main s390x libgtk-3-0t64 s390x 3.24.48-3ubuntu1 [2949 kB] 269s Get:65 http://ftpmaster.internal/ubuntu plucky/main s390x x11-common all 1:7.7+23ubuntu3 [21.7 kB] 269s Get:66 http://ftpmaster.internal/ubuntu plucky/main s390x libice6 s390x 2:1.1.1-1 [45.4 kB] 269s Get:67 http://ftpmaster.internal/ubuntu plucky/main s390x libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [328 kB] 269s Get:68 http://ftpmaster.internal/ubuntu plucky/main s390x libnotify4 s390x 0.8.4-1 [25.9 kB] 269s Get:69 http://ftpmaster.internal/ubuntu plucky/universe s390x libopenbabel-dev s390x 3.1.1+dfsg-11ubuntu3 [181 kB] 270s Get:70 http://ftpmaster.internal/ubuntu plucky/universe s390x libopenbabel-doc all 3.1.1+dfsg-11ubuntu3 [5611 kB] 273s Get:71 http://ftpmaster.internal/ubuntu plucky/main s390x libpcre2-32-0 s390x 10.45-1 [245 kB] 273s Get:72 http://ftpmaster.internal/ubuntu plucky/main s390x libsm6 s390x 2:1.2.4-1 [18.4 kB] 273s Get:73 http://ftpmaster.internal/ubuntu plucky/universe s390x libwxbase3.2-1t64 s390x 3.2.6+dfsg-2ubuntu1 [915 kB] 274s Get:74 http://ftpmaster.internal/ubuntu plucky/main s390x libxtst6 s390x 2:1.2.5-1 [13.5 kB] 274s Get:75 http://ftpmaster.internal/ubuntu plucky/universe s390x libwxgtk3.2-1t64 s390x 3.2.6+dfsg-2ubuntu1 [4737 kB] 277s Get:76 http://ftpmaster.internal/ubuntu plucky/universe s390x openbabel s390x 3.1.1+dfsg-11ubuntu3 [132 kB] 277s Get:77 http://ftpmaster.internal/ubuntu plucky/universe s390x openbabel-gui s390x 3.1.1+dfsg-11ubuntu3 [88.7 kB] 277s Get:78 http://ftpmaster.internal/ubuntu plucky/universe s390x python3-openbabel s390x 3.1.1+dfsg-11ubuntu3 [613 kB] 277s Fetched 29.8 MB in 25s (1194 kB/s) 277s Selecting previously unselected package libgdk-pixbuf2.0-common. 278s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 56326 files and directories currently installed.) 278s Preparing to unpack .../00-libgdk-pixbuf2.0-common_2.42.12+dfsg-2_all.deb ... 278s Unpacking libgdk-pixbuf2.0-common (2.42.12+dfsg-2) ... 278s Selecting previously unselected package libjpeg-turbo8:s390x. 278s Preparing to unpack .../01-libjpeg-turbo8_2.1.5-3ubuntu2_s390x.deb ... 278s Unpacking libjpeg-turbo8:s390x (2.1.5-3ubuntu2) ... 278s Selecting previously unselected package libjpeg8:s390x. 278s Preparing to unpack .../02-libjpeg8_8c-2ubuntu11_s390x.deb ... 278s Unpacking libjpeg8:s390x (8c-2ubuntu11) ... 278s Selecting previously unselected package libdeflate0:s390x. 278s Preparing to unpack .../03-libdeflate0_1.23-1_s390x.deb ... 278s Unpacking libdeflate0:s390x (1.23-1) ... 278s Selecting previously unselected package libjbig0:s390x. 278s Preparing to unpack .../04-libjbig0_2.1-6.1ubuntu2_s390x.deb ... 278s Unpacking libjbig0:s390x (2.1-6.1ubuntu2) ... 278s Selecting previously unselected package libsharpyuv0:s390x. 278s Preparing to unpack .../05-libsharpyuv0_1.5.0-0.1_s390x.deb ... 278s Unpacking libsharpyuv0:s390x (1.5.0-0.1) ... 278s Selecting previously unselected package libwebp7:s390x. 278s Preparing to unpack .../06-libwebp7_1.5.0-0.1_s390x.deb ... 278s Unpacking libwebp7:s390x (1.5.0-0.1) ... 278s Selecting previously unselected package libtiff6:s390x. 278s Preparing to unpack .../07-libtiff6_4.5.1+git230720-4ubuntu4_s390x.deb ... 278s Unpacking libtiff6:s390x (4.5.1+git230720-4ubuntu4) ... 278s Selecting previously unselected package libgdk-pixbuf-2.0-0:s390x. 278s Preparing to unpack .../08-libgdk-pixbuf-2.0-0_2.42.12+dfsg-2_s390x.deb ... 278s Unpacking libgdk-pixbuf-2.0-0:s390x (2.42.12+dfsg-2) ... 278s Selecting previously unselected package gtk-update-icon-cache. 278s Preparing to unpack .../09-gtk-update-icon-cache_4.17.5+ds-3ubuntu1_s390x.deb ... 278s No diversion 'diversion of /usr/sbin/update-icon-caches to /usr/sbin/update-icon-caches.gtk2 by libgtk-3-bin', none removed. 278s No diversion 'diversion of /usr/share/man/man8/update-icon-caches.8.gz to /usr/share/man/man8/update-icon-caches.gtk2.8.gz by libgtk-3-bin', none removed. 278s Unpacking gtk-update-icon-cache (4.17.5+ds-3ubuntu1) ... 278s Selecting previously unselected package hicolor-icon-theme. 278s Preparing to unpack .../10-hicolor-icon-theme_0.18-2_all.deb ... 278s Unpacking hicolor-icon-theme (0.18-2) ... 278s Selecting previously unselected package adwaita-icon-theme. 278s Preparing to unpack .../11-adwaita-icon-theme_48.0-1_all.deb ... 278s Unpacking adwaita-icon-theme (48.0-1) ... 278s Selecting previously unselected package at-spi2-common. 278s Preparing to unpack .../12-at-spi2-common_2.55.90-1_all.deb ... 278s Unpacking at-spi2-common (2.55.90-1) ... 278s Selecting previously unselected package libdconf1:s390x. 278s Preparing to unpack .../13-libdconf1_0.40.0-5_s390x.deb ... 278s Unpacking libdconf1:s390x (0.40.0-5) ... 278s Selecting previously unselected package dconf-service. 278s Preparing to unpack .../14-dconf-service_0.40.0-5_s390x.deb ... 278s Unpacking dconf-service (0.40.0-5) ... 278s Selecting previously unselected package dconf-gsettings-backend:s390x. 278s Preparing to unpack .../15-dconf-gsettings-backend_0.40.0-5_s390x.deb ... 278s Unpacking dconf-gsettings-backend:s390x (0.40.0-5) ... 278s Selecting previously unselected package libfreetype6:s390x. 278s Preparing to unpack .../16-libfreetype6_2.13.3+dfsg-1_s390x.deb ... 278s Unpacking libfreetype6:s390x (2.13.3+dfsg-1) ... 278s Selecting previously unselected package fonts-dejavu-mono. 278s Preparing to unpack .../17-fonts-dejavu-mono_2.37-8_all.deb ... 278s Unpacking fonts-dejavu-mono (2.37-8) ... 278s Selecting previously unselected package fonts-dejavu-core. 278s Preparing to unpack .../18-fonts-dejavu-core_2.37-8_all.deb ... 278s Unpacking fonts-dejavu-core (2.37-8) ... 278s Selecting previously unselected package fontconfig-config. 278s Preparing to unpack .../19-fontconfig-config_2.15.0-2ubuntu1_s390x.deb ... 278s Unpacking fontconfig-config (2.15.0-2ubuntu1) ... 278s Selecting previously unselected package libfontconfig1:s390x. 278s Preparing to unpack .../20-libfontconfig1_2.15.0-2ubuntu1_s390x.deb ... 278s Unpacking libfontconfig1:s390x (2.15.0-2ubuntu1) ... 278s Selecting previously unselected package fontconfig. 278s Preparing to unpack .../21-fontconfig_2.15.0-2ubuntu1_s390x.deb ... 278s Unpacking fontconfig (2.15.0-2ubuntu1) ... 278s Selecting previously unselected package libatk1.0-0t64:s390x. 278s Preparing to unpack .../22-libatk1.0-0t64_2.55.90-1_s390x.deb ... 278s Unpacking libatk1.0-0t64:s390x (2.55.90-1) ... 278s Selecting previously unselected package libxi6:s390x. 278s Preparing to unpack .../23-libxi6_2%3a1.8.2-1_s390x.deb ... 278s Unpacking libxi6:s390x (2:1.8.2-1) ... 278s Selecting previously unselected package libatspi2.0-0t64:s390x. 278s Preparing to unpack .../24-libatspi2.0-0t64_2.55.90-1_s390x.deb ... 278s Unpacking libatspi2.0-0t64:s390x (2.55.90-1) ... 278s Selecting previously unselected package libatk-bridge2.0-0t64:s390x. 278s Preparing to unpack .../25-libatk-bridge2.0-0t64_2.55.90-1_s390x.deb ... 278s Unpacking libatk-bridge2.0-0t64:s390x (2.55.90-1) ... 278s Selecting previously unselected package libavahi-common-data:s390x. 278s Preparing to unpack .../26-libavahi-common-data_0.8-16ubuntu1_s390x.deb ... 278s Unpacking libavahi-common-data:s390x (0.8-16ubuntu1) ... 278s Selecting previously unselected package libavahi-common3:s390x. 278s Preparing to unpack .../27-libavahi-common3_0.8-16ubuntu1_s390x.deb ... 278s Unpacking libavahi-common3:s390x (0.8-16ubuntu1) ... 278s Selecting previously unselected package libavahi-client3:s390x. 278s Preparing to unpack .../28-libavahi-client3_0.8-16ubuntu1_s390x.deb ... 278s Unpacking libavahi-client3:s390x (0.8-16ubuntu1) ... 278s Selecting previously unselected package libboost-iostreams1.83.0:s390x. 278s Preparing to unpack .../29-libboost-iostreams1.83.0_1.83.0-4.1ubuntu2_s390x.deb ... 278s Unpacking libboost-iostreams1.83.0:s390x (1.83.0-4.1ubuntu2) ... 278s Selecting previously unselected package libpixman-1-0:s390x. 278s Preparing to unpack .../30-libpixman-1-0_0.44.0-3_s390x.deb ... 278s Unpacking libpixman-1-0:s390x (0.44.0-3) ... 278s Selecting previously unselected package libxcb-render0:s390x. 278s Preparing to unpack .../31-libxcb-render0_1.17.0-2_s390x.deb ... 278s Unpacking libxcb-render0:s390x (1.17.0-2) ... 278s Selecting previously unselected package libxcb-shm0:s390x. 278s Preparing to unpack .../32-libxcb-shm0_1.17.0-2_s390x.deb ... 278s Unpacking libxcb-shm0:s390x (1.17.0-2) ... 278s Selecting previously unselected package libxrender1:s390x. 278s Preparing to unpack .../33-libxrender1_1%3a0.9.10-1.1build1_s390x.deb ... 278s Unpacking libxrender1:s390x (1:0.9.10-1.1build1) ... 278s Selecting previously unselected package libcairo2:s390x. 278s Preparing to unpack .../34-libcairo2_1.18.2-2_s390x.deb ... 278s Unpacking libcairo2:s390x (1.18.2-2) ... 278s Selecting previously unselected package libcairo-gobject2:s390x. 278s Preparing to unpack .../35-libcairo-gobject2_1.18.2-2_s390x.deb ... 278s Unpacking libcairo-gobject2:s390x (1.18.2-2) ... 278s Selecting previously unselected package libgomp1:s390x. 278s Preparing to unpack .../36-libgomp1_15-20250222-0ubuntu1_s390x.deb ... 278s Unpacking libgomp1:s390x (15-20250222-0ubuntu1) ... 278s Selecting previously unselected package libinchi1.07. 278s Preparing to unpack .../37-libinchi1.07_1.07.3+dfsg-1_s390x.deb ... 278s Unpacking libinchi1.07 (1.07.3+dfsg-1) ... 278s Selecting previously unselected package libmaeparser1:s390x. 278s Preparing to unpack .../38-libmaeparser1_1.3.1-1build1_s390x.deb ... 278s Unpacking libmaeparser1:s390x (1.3.1-1build1) ... 278s Selecting previously unselected package libopenbabel7. 278s Preparing to unpack .../39-libopenbabel7_3.1.1+dfsg-11ubuntu3_s390x.deb ... 278s Unpacking libopenbabel7 (3.1.1+dfsg-11ubuntu3) ... 278s Selecting previously unselected package libchemistry-openbabel-perl. 278s Preparing to unpack .../40-libchemistry-openbabel-perl_3.1.1+dfsg-11ubuntu3_s390x.deb ... 278s Unpacking libchemistry-openbabel-perl (3.1.1+dfsg-11ubuntu3) ... 278s Selecting previously unselected package liblcms2-2:s390x. 278s Preparing to unpack .../41-liblcms2-2_2.16-2_s390x.deb ... 278s Unpacking liblcms2-2:s390x (2.16-2) ... 278s Selecting previously unselected package libcolord2:s390x. 278s Preparing to unpack .../42-libcolord2_1.4.7-3_s390x.deb ... 278s Unpacking libcolord2:s390x (1.4.7-3) ... 278s Selecting previously unselected package libcups2t64:s390x. 278s Preparing to unpack .../43-libcups2t64_2.4.11-0ubuntu2_s390x.deb ... 278s Unpacking libcups2t64:s390x (2.4.11-0ubuntu2) ... 278s Selecting previously unselected package libdatrie1:s390x. 278s Preparing to unpack .../44-libdatrie1_0.2.13-3build1_s390x.deb ... 278s Unpacking libdatrie1:s390x (0.2.13-3build1) ... 278s Selecting previously unselected package libepoxy0:s390x. 278s Preparing to unpack .../45-libepoxy0_1.5.10-2_s390x.deb ... 278s Unpacking libepoxy0:s390x (1.5.10-2) ... 278s Selecting previously unselected package libgraphite2-3:s390x. 278s Preparing to unpack .../46-libgraphite2-3_1.3.14-2ubuntu1_s390x.deb ... 278s Unpacking libgraphite2-3:s390x (1.3.14-2ubuntu1) ... 278s Selecting previously unselected package libharfbuzz0b:s390x. 278s Preparing to unpack .../47-libharfbuzz0b_10.2.0-1_s390x.deb ... 278s Unpacking libharfbuzz0b:s390x (10.2.0-1) ... 278s Selecting previously unselected package libthai-data. 278s Preparing to unpack .../48-libthai-data_0.1.29-2build1_all.deb ... 278s Unpacking libthai-data (0.1.29-2build1) ... 278s Selecting previously unselected package libthai0:s390x. 278s Preparing to unpack .../49-libthai0_0.1.29-2build1_s390x.deb ... 278s Unpacking libthai0:s390x (0.1.29-2build1) ... 278s Selecting previously unselected package libpango-1.0-0:s390x. 278s Preparing to unpack .../50-libpango-1.0-0_1.56.2-1_s390x.deb ... 278s Unpacking libpango-1.0-0:s390x (1.56.2-1) ... 278s Selecting previously unselected package libpangoft2-1.0-0:s390x. 278s Preparing to unpack .../51-libpangoft2-1.0-0_1.56.2-1_s390x.deb ... 278s Unpacking libpangoft2-1.0-0:s390x (1.56.2-1) ... 278s Selecting previously unselected package libpangocairo-1.0-0:s390x. 278s Preparing to unpack .../52-libpangocairo-1.0-0_1.56.2-1_s390x.deb ... 278s Unpacking libpangocairo-1.0-0:s390x (1.56.2-1) ... 278s Selecting previously unselected package libwayland-client0:s390x. 278s Preparing to unpack .../53-libwayland-client0_1.23.1-3_s390x.deb ... 278s Unpacking libwayland-client0:s390x (1.23.1-3) ... 279s Selecting previously unselected package libwayland-cursor0:s390x. 279s Preparing to unpack .../54-libwayland-cursor0_1.23.1-3_s390x.deb ... 279s Unpacking libwayland-cursor0:s390x (1.23.1-3) ... 279s Selecting previously unselected package libwayland-egl1:s390x. 279s Preparing to unpack .../55-libwayland-egl1_1.23.1-3_s390x.deb ... 279s Unpacking libwayland-egl1:s390x (1.23.1-3) ... 279s Selecting previously unselected package libxcomposite1:s390x. 279s Preparing to unpack .../56-libxcomposite1_1%3a0.4.6-1_s390x.deb ... 279s Unpacking libxcomposite1:s390x (1:0.4.6-1) ... 279s Selecting previously unselected package libxfixes3:s390x. 279s Preparing to unpack .../57-libxfixes3_1%3a6.0.0-2build1_s390x.deb ... 279s Unpacking libxfixes3:s390x (1:6.0.0-2build1) ... 279s Selecting previously unselected package libxcursor1:s390x. 279s Preparing to unpack .../58-libxcursor1_1%3a1.2.3-1_s390x.deb ... 279s Unpacking libxcursor1:s390x (1:1.2.3-1) ... 279s Selecting previously unselected package libxdamage1:s390x. 279s Preparing to unpack .../59-libxdamage1_1%3a1.1.6-1build1_s390x.deb ... 279s Unpacking libxdamage1:s390x (1:1.1.6-1build1) ... 279s Selecting previously unselected package libxinerama1:s390x. 279s Preparing to unpack .../60-libxinerama1_2%3a1.1.4-3build1_s390x.deb ... 279s Unpacking libxinerama1:s390x (2:1.1.4-3build1) ... 279s Selecting previously unselected package libxrandr2:s390x. 279s Preparing to unpack .../61-libxrandr2_2%3a1.5.4-1_s390x.deb ... 279s Unpacking libxrandr2:s390x (2:1.5.4-1) ... 279s Selecting previously unselected package libgtk-3-common. 279s Preparing to unpack .../62-libgtk-3-common_3.24.48-3ubuntu1_all.deb ... 279s Unpacking libgtk-3-common (3.24.48-3ubuntu1) ... 279s Selecting previously unselected package libgtk-3-0t64:s390x. 279s Preparing to unpack .../63-libgtk-3-0t64_3.24.48-3ubuntu1_s390x.deb ... 279s Unpacking libgtk-3-0t64:s390x (3.24.48-3ubuntu1) ... 279s Selecting previously unselected package x11-common. 279s Preparing to unpack .../64-x11-common_1%3a7.7+23ubuntu3_all.deb ... 279s Unpacking x11-common (1:7.7+23ubuntu3) ... 279s Selecting previously unselected package libice6:s390x. 279s Preparing to unpack .../65-libice6_2%3a1.1.1-1_s390x.deb ... 279s Unpacking libice6:s390x (2:1.1.1-1) ... 279s Selecting previously unselected package libjs-jquery. 279s Preparing to unpack .../66-libjs-jquery_3.6.1+dfsg+~3.5.14-1_all.deb ... 279s Unpacking libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... 279s Selecting previously unselected package libnotify4:s390x. 279s Preparing to unpack .../67-libnotify4_0.8.4-1_s390x.deb ... 279s Unpacking libnotify4:s390x (0.8.4-1) ... 279s Selecting previously unselected package libopenbabel-dev. 279s Preparing to unpack .../68-libopenbabel-dev_3.1.1+dfsg-11ubuntu3_s390x.deb ... 279s Unpacking libopenbabel-dev (3.1.1+dfsg-11ubuntu3) ... 279s Selecting previously unselected package libopenbabel-doc. 279s Preparing to unpack .../69-libopenbabel-doc_3.1.1+dfsg-11ubuntu3_all.deb ... 279s Unpacking libopenbabel-doc (3.1.1+dfsg-11ubuntu3) ... 279s Selecting previously unselected package libpcre2-32-0:s390x. 279s Preparing to unpack .../70-libpcre2-32-0_10.45-1_s390x.deb ... 279s Unpacking libpcre2-32-0:s390x (10.45-1) ... 279s Selecting previously unselected package libsm6:s390x. 279s Preparing to unpack .../71-libsm6_2%3a1.2.4-1_s390x.deb ... 279s Unpacking libsm6:s390x (2:1.2.4-1) ... 279s Selecting previously unselected package libwxbase3.2-1t64:s390x. 279s Preparing to unpack .../72-libwxbase3.2-1t64_3.2.6+dfsg-2ubuntu1_s390x.deb ... 279s Unpacking libwxbase3.2-1t64:s390x (3.2.6+dfsg-2ubuntu1) ... 279s Selecting previously unselected package libxtst6:s390x. 279s Preparing to unpack .../73-libxtst6_2%3a1.2.5-1_s390x.deb ... 279s Unpacking libxtst6:s390x (2:1.2.5-1) ... 279s Selecting previously unselected package libwxgtk3.2-1t64:s390x. 279s Preparing to unpack .../74-libwxgtk3.2-1t64_3.2.6+dfsg-2ubuntu1_s390x.deb ... 279s Unpacking libwxgtk3.2-1t64:s390x (3.2.6+dfsg-2ubuntu1) ... 279s Selecting previously unselected package openbabel. 279s Preparing to unpack .../75-openbabel_3.1.1+dfsg-11ubuntu3_s390x.deb ... 279s Unpacking openbabel (3.1.1+dfsg-11ubuntu3) ... 279s Selecting previously unselected package openbabel-gui. 279s Preparing to unpack .../76-openbabel-gui_3.1.1+dfsg-11ubuntu3_s390x.deb ... 279s Unpacking openbabel-gui (3.1.1+dfsg-11ubuntu3) ... 279s Selecting previously unselected package python3-openbabel. 279s Preparing to unpack .../77-python3-openbabel_3.1.1+dfsg-11ubuntu3_s390x.deb ... 279s Unpacking python3-openbabel (3.1.1+dfsg-11ubuntu3) ... 279s Setting up libgraphite2-3:s390x (1.3.14-2ubuntu1) ... 279s Setting up liblcms2-2:s390x (2.16-2) ... 279s Setting up libpixman-1-0:s390x (0.44.0-3) ... 279s Setting up libsharpyuv0:s390x (1.5.0-0.1) ... 279s Setting up libxdamage1:s390x (1:1.1.6-1build1) ... 279s Setting up hicolor-icon-theme (0.18-2) ... 279s Setting up libxi6:s390x (2:1.8.2-1) ... 279s Setting up libxrender1:s390x (1:0.9.10-1.1build1) ... 279s Setting up libdatrie1:s390x (0.2.13-3build1) ... 279s Setting up libxcb-render0:s390x (1.17.0-2) ... 279s Setting up libgdk-pixbuf2.0-common (2.42.12+dfsg-2) ... 279s Setting up x11-common (1:7.7+23ubuntu3) ... 279s Setting up libdeflate0:s390x (1.23-1) ... 279s Setting up libxcb-shm0:s390x (1.17.0-2) ... 279s Setting up libgomp1:s390x (15-20250222-0ubuntu1) ... 279s Setting up libjbig0:s390x (2.1-6.1ubuntu2) ... 279s Setting up libcolord2:s390x (1.4.7-3) ... 279s Setting up libdconf1:s390x (0.40.0-5) ... 279s Setting up libpcre2-32-0:s390x (10.45-1) ... 279s Setting up libfreetype6:s390x (2.13.3+dfsg-1) ... 279s Setting up libepoxy0:s390x (1.5.10-2) ... 279s Setting up libxfixes3:s390x (1:6.0.0-2build1) ... 279s Setting up libboost-iostreams1.83.0:s390x (1.83.0-4.1ubuntu2) ... 279s Setting up libavahi-common-data:s390x (0.8-16ubuntu1) ... 279s Setting up libatspi2.0-0t64:s390x (2.55.90-1) ... 279s Setting up libxinerama1:s390x (2:1.1.4-3build1) ... 279s Setting up fonts-dejavu-mono (2.37-8) ... 279s Setting up libxrandr2:s390x (2:1.5.4-1) ... 279s Setting up fonts-dejavu-core (2.37-8) ... 279s Setting up libjpeg-turbo8:s390x (2.1.5-3ubuntu2) ... 279s Setting up libwebp7:s390x (1.5.0-0.1) ... 279s Setting up at-spi2-common (2.55.90-1) ... 279s Setting up libharfbuzz0b:s390x (10.2.0-1) ... 279s Setting up libthai-data (0.1.29-2build1) ... 279s Setting up libwayland-egl1:s390x (1.23.1-3) ... 279s Setting up libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... 279s Setting up libwxbase3.2-1t64:s390x (3.2.6+dfsg-2ubuntu1) ... 279s Setting up libinchi1.07 (1.07.3+dfsg-1) ... 279s Setting up libxcomposite1:s390x (1:0.4.6-1) ... 279s Setting up libwayland-client0:s390x (1.23.1-3) ... 279s Setting up libjpeg8:s390x (8c-2ubuntu11) ... 279s Setting up libice6:s390x (2:1.1.1-1) ... 279s Setting up libatk1.0-0t64:s390x (2.55.90-1) ... 279s Setting up fontconfig-config (2.15.0-2ubuntu1) ... 280s Setting up libxtst6:s390x (2:1.2.5-1) ... 280s Setting up libxcursor1:s390x (1:1.2.3-1) ... 280s Setting up libavahi-common3:s390x (0.8-16ubuntu1) ... 280s Setting up dconf-service (0.40.0-5) ... 280s Setting up libopenbabel-doc (3.1.1+dfsg-11ubuntu3) ... 280s Setting up libmaeparser1:s390x (1.3.1-1build1) ... 280s Setting up libthai0:s390x (0.1.29-2build1) ... 280s Setting up libtiff6:s390x (4.5.1+git230720-4ubuntu4) ... 280s Setting up libwayland-cursor0:s390x (1.23.1-3) ... 280s Setting up libgdk-pixbuf-2.0-0:s390x (2.42.12+dfsg-2) ... 280s Setting up libfontconfig1:s390x (2.15.0-2ubuntu1) ... 280s Setting up libsm6:s390x (2:1.2.4-1) ... 280s Setting up libavahi-client3:s390x (0.8-16ubuntu1) ... 280s Setting up libatk-bridge2.0-0t64:s390x (2.55.90-1) ... 280s Setting up gtk-update-icon-cache (4.17.5+ds-3ubuntu1) ... 280s Setting up fontconfig (2.15.0-2ubuntu1) ... 282s Regenerating fonts cache... done. 282s Setting up dconf-gsettings-backend:s390x (0.40.0-5) ... 282s Setting up libpango-1.0-0:s390x (1.56.2-1) ... 282s Setting up libcairo2:s390x (1.18.2-2) ... 282s Setting up adwaita-icon-theme (48.0-1) ... 282s update-alternatives: using /usr/share/icons/Adwaita/cursor.theme to provide /usr/share/icons/default/index.theme (x-cursor-theme) in auto mode 282s Setting up libnotify4:s390x (0.8.4-1) ... 282s Setting up libcairo-gobject2:s390x (1.18.2-2) ... 282s Setting up libpangoft2-1.0-0:s390x (1.56.2-1) ... 282s Setting up libcups2t64:s390x (2.4.11-0ubuntu2) ... 282s Setting up libgtk-3-common (3.24.48-3ubuntu1) ... 282s Setting up libpangocairo-1.0-0:s390x (1.56.2-1) ... 282s Setting up libopenbabel7 (3.1.1+dfsg-11ubuntu3) ... 282s Setting up libopenbabel-dev (3.1.1+dfsg-11ubuntu3) ... 282s Setting up libchemistry-openbabel-perl (3.1.1+dfsg-11ubuntu3) ... 282s Setting up python3-openbabel (3.1.1+dfsg-11ubuntu3) ... 282s Setting up openbabel (3.1.1+dfsg-11ubuntu3) ... 282s Processing triggers for libc-bin (2.41-1ubuntu2) ... 282s Processing triggers for man-db (2.13.0-1) ... 282s Processing triggers for libglib2.0-0t64:s390x (2.84.0-1) ... 282s Setting up libgtk-3-0t64:s390x (3.24.48-3ubuntu1) ... 283s Setting up libwxgtk3.2-1t64:s390x (3.2.6+dfsg-2ubuntu1) ... 283s Setting up openbabel-gui (3.1.1+dfsg-11ubuntu3) ... 283s Processing triggers for libc-bin (2.41-1ubuntu2) ... 285s autopkgtest [16:20:23]: test python3: [----------------------- 285s Running test/testRInChI.py ... 285s /tmp/autopkgtest.X5Xrhd/build.9i8/src/test/testRInChI.py:7: SyntaxWarning: invalid escape sequence '\P' 285s "C:\Program Files\CMake 2.6\bin\ctest.exe" -C CTestTestfile.cmake 285s /tmp/autopkgtest.X5Xrhd/build.9i8/src/test/testbabel.py:7: SyntaxWarning: invalid escape sequence '\P' 285s "C:\Program Files\CMake 2.6\bin\ctest.exe" -C CTestTestfile.cmake 285s /tmp/autopkgtest.X5Xrhd/build.9i8/src/test/testbabel.py:101: SyntaxWarning: invalid escape sequence '\d' 285s pat = "(-?\d.*) molecule(?:s?) converted" 286s .. 286s ---------------------------------------------------------------------- 286s Ran 2 tests in 0.516s 286s 286s OK 286s Running test/test_pybel.py ... 286s /tmp/autopkgtest.X5Xrhd/build.9i8/src/test/test_pybel.py:5: SyntaxWarning: invalid escape sequence '\P' 286s "C:\Program Files\CMake 2.6\bin\ctest.exe" -C CTestTestfile.cmake 286s /tmp/autopkgtest.X5Xrhd/build.9i8/src/test/testbindings.py:5: SyntaxWarning: invalid escape sequence '\P' 286s "C:\Program Files\CMake 2.6\bin\ctest.exe" -C CTestTestfile.cmake 286s .........................============================== 286s *** Open Babel Warning in WriteMolecule 286s No 2D or 3D coordinates exist. Stereochemical information will be stored using an Open Babel extension. To generate 2D or 3D coordinates instead use --gen2D or --gen3D. 286s .....============================== 286s *** Open Babel Error in SMARTSError 286s SMARTS Error: 286s [#NOEL][#NOEL] 286s ^ 286s 286s .... 286s ---------------------------------------------------------------------- 286s Ran 34 tests in 0.265s 286s 286s OK 286s Running test/testbabel.py ... 286s /tmp/autopkgtest.X5Xrhd/build.9i8/src/test/testbabel.py:7: SyntaxWarning: invalid escape sequence '\P' 286s "C:\Program Files\CMake 2.6\bin\ctest.exe" -C CTestTestfile.cmake 286s /tmp/autopkgtest.X5Xrhd/build.9i8/src/test/testbabel.py:101: SyntaxWarning: invalid escape sequence '\d' 286s pat = "(-?\d.*) molecule(?:s?) converted" 287s ......./usr/lib/python3.13/subprocess.py:1020: RuntimeWarning: line buffering (buffering=1) isn't supported in binary mode, the default buffer size will be used 287s self.stdin = io.open(p2cwrite, 'wb', bufsize) 287s /usr/lib/python3.13/subprocess.py:1026: RuntimeWarning: line buffering (buffering=1) isn't supported in binary mode, the default buffer size will be used 287s self.stdout = io.open(c2pread, 'rb', bufsize) 287s /usr/lib/python3.13/subprocess.py:1031: RuntimeWarning: line buffering (buffering=1) isn't supported in binary mode, the default buffer size will be used 287s self.stderr = io.open(errread, 'rb', bufsize) 289s ...Running test/testbindings.py ... 289s ... 289s ---------------------------------------------------------------------- 289s Ran 13 tests in 2.042s 289s 289s OK 289s /tmp/autopkgtest.X5Xrhd/build.9i8/src/test/testbindings.py:5: SyntaxWarning: invalid escape sequence '\P' 289s "C:\Program Files\CMake 2.6\bin\ctest.exe" -C CTestTestfile.cmake 289s ...============================== 289s *** Open Babel Warning in WriteMolecule 289s No 2D or 3D coordinates exist. Stereochemical information will be stored using an Open Babel extension. To generate 2D or 3D coordinates instead use --gen2D or --gen3D. 289s ....============================== 289s *** Open Babel Warning in ParseSmiles 289s Too many greater-than signs in SMILES string 289s 289s ============================== 289s *** Open Babel Warning in ParseSmiles 289s Too many greater-than signs in SMILES string 289s 289s ============================== 289s *** Open Babel Warning in ParseSmiles 289s Too many greater-than signs in SMILES string 289s 289s ============================== 289s *** Open Babel Warning in ParseSmiles 289s Invalid reaction SMILES string: only a single '>' sign found (two required to be valid). 289s ============================== 289s *** Open Babel Warning in ParseSmiles 289s Invalid reaction SMILES string: only a single '>' sign found (two required to be valid). 289s ============================== 289s *** Open Babel Warning in ParseSmiles 289s Invalid reaction SMILES string: only a single '>' sign found (two required to be valid). 289s ..============================== 289s *** Open Babel Warning in IsValid 289s The molecule is not marked as a reaction. Use SetIsReaction(). 289s ============================== 289s *** Open Babel Warning in IsValid 289s Reaction roles should be in the range 0 to 3 inclusive. 289s ============================== 289s *** Open Babel Warning in IsValid 289s Reaction component Ids should all be non-zero positive integers. 289s ============================== 289s *** Open Babel Warning in IsValid 289s The molecule contains an atom that is missing a reaction component Id. Use SetComponentId(). 289s ============================== 289s *** Open Babel Warning in IsValid 289s A reaction component Id has been stored using a data type that is not an OBPairInteger. 289s ============================== 289s *** Open Babel Warning in IsValid 289s The molecule contains a connected component that contains atoms with different reaction component Ids. All atoms in a particular connected component should have the same value. 289s ============================== 289s *** Open Babel Warning in IsValid 289s The molecule contains a connected component that contains atoms with different reaction roles. All atoms in a particular connected component should have the same role. 289s ...........============================== 289s *** Open Babel Warning in ReadMolecule 289s WARNING: Problem interpreting the valence field of an atom 289s The valence field specifies a valence 0 that is 289s less than the observed explicit valence 1. 289s 289s .============================== 289s *** Open Babel Warning in WriteMolecule 289s No 2D or 3D coordinates exist. Stereochemical information will be stored using an Open Babel extension. To generate 2D or 3D coordinates instead use --gen2D or --gen3D. 289s ..........============================== 289s *** Open Babel Error in ParseComplex 289s SMILES string contains a character '#' which is invalid 289s ============================== 289s *** Open Babel Error in ParseComplex 289s Element number must be <= 255) 289s ============================== 289s *** Open Babel Error in ParseComplex 289s SMILES string contains a character '#' which is invalid 289s ..============================== 289s *** Open Babel Warning in ParseRingBond 289s Warning: Tetrahedral stereo specified for atom with more than 4 connections. 289s ============================== 289s *** Open Babel Warning in ParseSmiles 289s Failed to kekulize aromatic SMILES 289s 326s .../tmp/autopkgtest.X5Xrhd/build.9i8/src/debian/tests/python3: line 9: 2803 Killed python3 ${TEST} 326s Ignoring test/testbindings.py on s390x ... 326s Running test/testcdjsonformat.py ... 326s /tmp/autopkgtest.X5Xrhd/build.9i8/src/test/testcdjsonformat.py:5: SyntaxWarning: invalid escape sequence '\P' 326s "C:\Program Files\CMake 2.6\bin\ctest.exe" -C CTestTestfile.cmake 327s ..........Running test/testdistgeom.py ... 327s 327s ---------------------------------------------------------------------- 327s Ran 10 tests in 0.004s 327s 327s OK 327s /tmp/autopkgtest.X5Xrhd/build.9i8/src/test/testdistgeom.py:7: SyntaxWarning: invalid escape sequence '\P' 327s "C:\Program Files\CMake 2.6\bin\ctest.exe" -C CTestTestfile.cmake 327s /usr/lib/python3.13/subprocess.py:1020: RuntimeWarning: line buffering (buffering=1) isn't supported in binary mode, the default buffer size will be used 327s self.stdin = io.open(p2cwrite, 'wb', bufsize) 327s /usr/lib/python3.13/subprocess.py:1026: RuntimeWarning: line buffering (buffering=1) isn't supported in binary mode, the default buffer size will be used 327s self.stdout = io.open(c2pread, 'rb', bufsize) 327s /usr/lib/python3.13/subprocess.py:1031: RuntimeWarning: line buffering (buffering=1) isn't supported in binary mode, the default buffer size will be used 327s self.stderr = io.open(errread, 'rb', bufsize) 377s . 377s ---------------------------------------------------------------------- 377s Ran 1 test in 48.758s 377s 377s OK 377s /tmp/autopkgtest.X5Xrhd/build.9i8/src/test/testexample.py:5: SyntaxWarning: invalid escape sequence '\P' 377s "C:\Program Files\CMake 2.6\bin\ctest.exe" -C CTestTestfile.cmake 377s .. 377s ---------------------------------------------------------------------- 377s Ran 2 tests in 0.000s 377s 377s OK 377s /tmp/autopkgtest.X5Xrhd/build.9i8/src/test/testfastsearch.py:7: SyntaxWarning: invalid escape sequence '\P' 377s "C:\Program Files\CMake 2.6\bin\ctest.exe" -C CTestTestfile.cmake 377s /tmp/autopkgtest.X5Xrhd/build.9i8/src/test/testfastsearch.py:33: SyntaxWarning: invalid escape sequence '\C' 377s C1(/[CH]2[CH]3\C(=C4/CC(C)(C)NC(C4)(C)C)C=C[CH]3[CH]1C=C2)=C1/CC(C)(C)NC(C1)(C)C 377s Running test/testexample.py ... 377s Running test/testfastsearch.py ... 377s Running test/testkekule.py ... 377s Running test/testobconv_writers.py ... 377s Ignoring test/testobconv_writers.py on s390x ... 377s Running test/testpcjsonformat.py ... 377s Running test/testpdbformat.py ... 377s Skipping test/testroundtrip.py ... 377s Running test/testsmartssym.py ... 377s Skipping test/testsym.py ... 377s Running test/testunique.py ... 377s . 377s ---------------------------------------------------------------------- 377s Ran 1 test in 0.054s 377s 377s OK 377s /tmp/autopkgtest.X5Xrhd/build.9i8/src/test/testkekule.py:7: SyntaxWarning: invalid escape sequence '\P' 377s "C:\Program Files\CMake 2.6\bin\ctest.exe" -C CTestTestfile.cmake 377s /usr/lib/python3.13/subprocess.py:1020: RuntimeWarning: line buffering (buffering=1) isn't supported in binary mode, the default buffer size will be used 377s self.stdin = io.open(p2cwrite, 'wb', bufsize) 377s /usr/lib/python3.13/subprocess.py:1026: RuntimeWarning: line buffering (buffering=1) isn't supported in binary mode, the default buffer size will be used 377s self.stdout = io.open(c2pread, 'rb', bufsize) 377s /usr/lib/python3.13/subprocess.py:1031: RuntimeWarning: line buffering (buffering=1) isn't supported in binary mode, the default buffer size will be used 377s self.stderr = io.open(errread, 'rb', bufsize) 377s ... 377s ---------------------------------------------------------------------- 377s Ran 3 tests in 0.296s 377s 377s OK 377s ........................F.................................................................F.................................................. 377s ====================================================================== 377s FAIL: test_default (__main__.TestCSR.test_default) 377s ---------------------------------------------------------------------- 377s Traceback (most recent call last): 377s File "/tmp/autopkgtest.X5Xrhd/build.9i8/src/test/testobconv_writers.py", line 1230, in test_default 377s self.assertBinaryWriters(self.fmt, b'\x04\x00\x00\x00V33 \x04\x00\x00\x00\x08\x00\x00\x00\x07\x00\x00\x00\x01\x00\x00\x00\x08\x00\x00\x00d\x00\x00\x00phenol \x00d\x00\x00\x00\x04\x00\x00\x00\x07\x00\x00\x00\x04\x00\x00\x00\\\x00\x00\x00\x01\x00\x00\x00\x05\x17+j0\xad\x04\xc0phenol:1 \x00\\\x00\x00\x008\x00\x00\x00\x98\xdd\x93\x87\x85Z\xf9?r\x8a\x8e\xe4\xf2\x1f\xf9?V\x0e-\xb2\x9do\x03@?W[\xb1\xbfl\n@\n\xd7\xa3p=\x8a\n@\x00\x00\x00\x00\x00\x00\x00\x005^\xbaI\x0c\x02\xf0\xbf8\x00\x00\x008\x00\x00\x00V}\xae\xb6b\x7f\x99\xbf\x9e\xef\xa7\xc6K7\xef?\xe4\x83\x9e\xcd\xaa\xcf\xf7?\xc4\xb1.n\xa3\x01\xf0?\x00\x00\x00\x00\x00\x00\x00\x80\x00\x00\x00\x00\x00\x00\x00\x00\x88\x85Z\xd3\xbc\xe3t?8\x00\x00\x008\x00\x00\x00\x00\x00\x00\x00\x00\x00\x00\x00\x00\x00\x00\x00\x00\x00\x00\x00\x00\x00\x00\x00\x00\x00\x00\x00\x00\x00\x00\x00\x00\x00\x00\x00\x00\x00\x00\x00\x00\x00\x00\x00\x00\x00\x00\x00\x00\x00\x00\x00\x00\x00\x00\x00\x00\x00\x00\x008\x00\x00\x00') 377s ~~~~~~~~~~~~~~~~~~~~~~~~^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 377s File "/tmp/autopkgtest.X5Xrhd/build.9i8/src/test/testobconv_writers.py", line 283, in assertBinaryWriters 377s test_binary_write_string(self, mol, conv, expected_output, normalize) 377s ~~~~~~~~~~~~~~~~~~~~~~~~^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 377s File "/tmp/autopkgtest.X5Xrhd/build.9i8/src/test/testobconv_writers.py", line 176, in test_binary_write_string 377s test_case.assertEqual(output, expected_output) 377s ~~~~~~~~~~~~~~~~~~~~~^^^^^^^^^^^^^^^^^^^^^^^^^ 377s AssertionError: b'\x00\x00\x00\x04V33 \x00\x00\x00\x04\x00\x00[1027 chars]x008' != b'\x04\x00\x00\x00V33 \x04\x00\x00\x00\x08\x00[1027 chars]\x00' 377s 377s ====================================================================== 377s FAIL: test_default (__main__.TestPCJSON.test_default) 377s ---------------------------------------------------------------------- 377s Traceback (most recent call last): 377s File "/tmp/autopkgtest.X5Xrhd/build.9i8/src/test/testobconv_writers.py", line 2761, in test_default 377s self.assertWriters(self.fmt, """\ 377s ~~~~~~~~~~~~~~~~~~^^^^^^^^^^^^^^^ 377s { 377s ^ 377s ...<165 lines>... 377s ] 377s ^ 377s }""") 377s ^^^^^ 377s File "/tmp/autopkgtest.X5Xrhd/build.9i8/src/test/testobconv_writers.py", line 258, in assertWriters 377s test_write_string(self, mol, conv, expected_output, normalize) 377s ~~~~~~~~~~~~~~~~~^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 377s File "/tmp/autopkgtest.X5Xrhd/build.9i8/src/test/testobconv_writers.py", line 165, in test_write_string 377s test_case.assertMultiLineEqual(output.replace("\r\n", "\n"), expected_output.replace("\r\n", "\n")) 377s ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 377s AssertionError: '{\n [1926 chars]102014\n ],\n "y": [[1070 chars]]\n}' != '{\n [1926 chars]102012\n ],\n "y": [[1070 chars]]\n}' 377s { 377s "PC_Compounds": [ 377s { 377s "atoms": { 377s "aids": [ 377s 1, 377s 2, 377s 3, 377s 4, 377s 5, 377s 6, 377s 7, 377s 8, 377s 9, 377s 10, 377s 11, 377s 12, 377s 13 377s ], 377s "element": [ 377s 6, 377s 6, 377s 6, 377s 6, 377s 6, 377s 6, 377s 8, 377s 1, 377s 1, 377s 1, 377s 1, 377s 1, 377s 1 377s ] 377s }, 377s "bonds": { 377s "aid1": [ 377s 1, 377s 1, 377s 2, 377s 3, 377s 4, 377s 5, 377s 6, 377s 1, 377s 2, 377s 3, 377s 4, 377s 5, 377s 7 377s ], 377s "aid2": [ 377s 6, 377s 2, 377s 3, 377s 4, 377s 5, 377s 6, 377s 7, 377s 8, 377s 9, 377s 10, 377s 11, 377s 12, 377s 13 377s ], 377s "order": [ 377s 2, 377s 1, 377s 2, 377s 1, 377s 2, 377s 1, 377s 1, 377s 1, 377s 1, 377s 1, 377s 1, 377s 1, 377s 1 377s ] 377s }, 377s "coords": [ 377s { 377s "type": [ 377s 1 377s ], 377s "aids": [ 377s 1, 377s 2, 377s 3, 377s 4, 377s 5, 377s 6, 377s 7, 377s 8, 377s 9, 377s 10, 377s 11, 377s 12, 377s 13 377s ], 377s "conformers": [ 377s { 377s "x": [ 377s 1.5846, 377s 1.5703, 377s 2.4295, 377s 3.3031, 377s 3.3175, 377s 0.0, 377s -1.0005, 377s 2.313816216007316, 377s 0.669250157347277, 377s 2.4146659588503769, 377s 4.189331679349326, 377s 4.052466878708012, 377s - -1.4648575597102014 377s ? ^ 377s + -1.4648575597102012 377s ? ^ 377s ], 377s "y": [ 377s 1.5846, 377s 1.5703, 377s 2.4295, 377s 3.3031, 377s 3.3175, 377s 0.0, 377s -1.0005, 377s 2.313816216007316, 377s 0.669250157347277, 377s 2.4146659588503769, 377s 4.189331679349326, 377s 4.052466878708012, 377s - -1.4648575597102014 377s ? ^ 377s + -1.4648575597102012 377s ? ^ 377s ], 377s "style": { 377s "annotation": [ 377s 8, 377s 8, 377s 8, 377s 8, 377s 8, 377s 8 377s ], 377s "aid1": [ 377s 1, 377s 1, 377s 2, 377s 3, 377s 4, 377s 5 377s ], 377s "aid2": [ 377s 6, 377s 2, 377s 3, 377s 4, 377s 5, 377s 6 377s ] 377s } 377s } 377s ] 377s } 377s ], 377s "charge": 0 377s } 377s ] 377s } 377s 377s 377s ---------------------------------------------------------------------- 377s Ran 141 tests in 0.086s 377s 377s FAILED (failures=2) 377s /tmp/autopkgtest.X5Xrhd/build.9i8/src/test/testpcjsonformat.py:5: SyntaxWarning: invalid escape sequence '\P' 377s "C:\Program Files\CMake 2.6\bin\ctest.exe" -C CTestTestfile.cmake 377s ................. 377s ---------------------------------------------------------------------- 377s Ran 17 tests in 0.012s 377s 377s OK 377s /tmp/autopkgtest.X5Xrhd/build.9i8/src/test/testpdbformat.py:7: SyntaxWarning: invalid escape sequence '\P' 377s "C:\Program Files\CMake 2.6\bin\ctest.exe" -C CTestTestfile.cmake 377s /usr/lib/python3.13/subprocess.py:1020: RuntimeWarning: line buffering (buffering=1) isn't supported in binary mode, the default buffer size will be used 377s self.stdin = io.open(p2cwrite, 'wb', bufsize) 377s /usr/lib/python3.13/subprocess.py:1026: RuntimeWarning: line buffering (buffering=1) isn't supported in binary mode, the default buffer size will be used 377s self.stdout = io.open(c2pread, 'rb', bufsize) 377s /usr/lib/python3.13/subprocess.py:1031: RuntimeWarning: line buffering (buffering=1) isn't supported in binary mode, the default buffer size will be used 377s self.stderr = io.open(errread, 'rb', bufsize) 377s . 377s ---------------------------------------------------------------------- 377s Ran 1 test in 0.014s 377s 377s OK 377s /tmp/autopkgtest.X5Xrhd/build.9i8/src/test/testsmartssym.py:7: SyntaxWarning: invalid escape sequence '\P' 377s "C:\Program Files\CMake 2.6\bin\ctest.exe" -C CTestTestfile.cmake 377s /usr/lib/python3.13/subprocess.py:1020: RuntimeWarning: line buffering (buffering=1) isn't supported in binary mode, the default buffer size will be used 377s self.stdin = io.open(p2cwrite, 'wb', bufsize) 377s /usr/lib/python3.13/subprocess.py:1026: RuntimeWarning: line buffering (buffering=1) isn't supported in binary mode, the default buffer size will be used 377s self.stdout = io.open(c2pread, 'rb', bufsize) 377s /usr/lib/python3.13/subprocess.py:1031: RuntimeWarning: line buffering (buffering=1) isn't supported in binary mode, the default buffer size will be used 377s self.stderr = io.open(errread, 'rb', bufsize) 377s .... 377s ---------------------------------------------------------------------- 377s Ran 4 tests in 0.516s 377s 377s OK 377s /tmp/autopkgtest.X5Xrhd/build.9i8/src/test/testunique.py:7: SyntaxWarning: invalid escape sequence '\P' 377s "C:\Program Files\CMake 2.6\bin\ctest.exe" -C CTestTestfile.cmake 377s /tmp/autopkgtest.X5Xrhd/build.9i8/src/test/testunique.py:34: SyntaxWarning: invalid escape sequence '\F' 377s F/C=C\F cis-difluoroethene 377s /usr/lib/python3.13/subprocess.py:1020: RuntimeWarning: line buffering (buffering=1) isn't supported in binary mode, the default buffer size will be used 377s self.stdin = io.open(p2cwrite, 'wb', bufsize) 377s /usr/lib/python3.13/subprocess.py:1026: RuntimeWarning: line buffering (buffering=1) isn't supported in binary mode, the default buffer size will be used 377s self.stdout = io.open(c2pread, 'rb', bufsize) 377s /usr/lib/python3.13/subprocess.py:1031: RuntimeWarning: line buffering (buffering=1) isn't supported in binary mode, the default buffer size will be used 377s self.stderr = io.open(errread, 'rb', bufsize) 377s . 377s ---------------------------------------------------------------------- 377s Ran 1 test in 0.132s 377s 377s OK 377s autopkgtest [16:21:55]: test python3: -----------------------] 378s python3 PASS 378s autopkgtest [16:21:56]: test python3: - - - - - - - - - - results - - - - - - - - - - 378s autopkgtest [16:21:56]: @@@@@@@@@@@@@@@@@@@@ summary 378s python3 PASS 398s nova [W] Using flock in prodstack6-s390x 398s Creating nova instance adt-plucky-s390x-openbabel-20250315-161537-juju-7f2275-prod-proposed-migration-environment-15-5f3e26fd-e8fd-4726-9870-09d9cfe0fba6 from image adt/ubuntu-plucky-s390x-server-20250315.img (UUID 3d3557fa-fd0f-4bba-9b89-8d5964e09f61)... 398s nova [W] Timed out waiting for 8e5a52fd-65d0-41fb-9dc5-90babf9784b9 to get deleted.