0s autopkgtest [10:58:36]: starting date and time: 2024-11-13 10:58:36+0000
  0s autopkgtest [10:58:36]: git checkout: 6f3be7a8 Fix armhf LXD image generation for plucky
  0s autopkgtest [10:58:36]: host juju-7f2275-prod-proposed-migration-environment-20; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.47yfwhkd/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:python3-defaults,src:python3-stdlib-extensions --apt-upgrade openbabel --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 '--env=ADT_TEST_TRIGGERS=python3-defaults/3.12.7-1 python3-stdlib-extensions/3.12.7-1' -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest-s390x --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-20@bos03-s390x-29.secgroup --name adt-plucky-s390x-openbabel-20241113-105835-juju-7f2275-prod-proposed-migration-environment-20-960bd9f8-4c09-4c2b-9d15-3cee53352ae4 --image adt/ubuntu-plucky-s390x-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-20 --net-id=net_prod-proposed-migration-s390x -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,keyserver.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/
176s autopkgtest [11:01:32]: testbed dpkg architecture: s390x
177s autopkgtest [11:01:33]: testbed apt version: 2.9.8
177s autopkgtest [11:01:33]: @@@@@@@@@@@@@@@@@@@@ test bed setup
178s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease [73.9 kB]
179s Get:2 http://ftpmaster.internal/ubuntu plucky-proposed/main Sources [76.4 kB]
179s Get:3 http://ftpmaster.internal/ubuntu plucky-proposed/universe Sources [849 kB]
179s Get:4 http://ftpmaster.internal/ubuntu plucky-proposed/restricted Sources [7016 B]
179s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse Sources [15.3 kB]
179s Get:6 http://ftpmaster.internal/ubuntu plucky-proposed/main s390x Packages [85.8 kB]
179s Get:7 http://ftpmaster.internal/ubuntu plucky-proposed/universe s390x Packages [565 kB]
179s Get:8 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse s390x Packages [16.6 kB]
179s Fetched 1689 kB in 1s (2157 kB/s)
179s Reading package lists...
181s Reading package lists...
181s Building dependency tree...
181s Reading state information...
182s Calculating upgrade...
182s The following NEW packages will be installed:
182s   python3.13-gdbm
182s The following packages will be upgraded:
182s   libgpgme11t64 libpython3-stdlib python3 python3-gdbm python3-minimal
182s 5 upgraded, 1 newly installed, 0 to remove and 0 not upgraded.
182s Need to get 252 kB of archives.
182s After this operation, 98.3 kB of additional disk space will be used.
182s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed/main s390x python3-minimal s390x 3.12.7-1 [27.4 kB]
182s Get:2 http://ftpmaster.internal/ubuntu plucky-proposed/main s390x python3 s390x 3.12.7-1 [24.0 kB]
182s Get:3 http://ftpmaster.internal/ubuntu plucky-proposed/main s390x libpython3-stdlib s390x 3.12.7-1 [10.0 kB]
182s Get:4 http://ftpmaster.internal/ubuntu plucky/main s390x python3.13-gdbm s390x 3.13.0-2 [31.0 kB]
182s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/main s390x python3-gdbm s390x 3.12.7-1 [8642 B]
182s Get:6 http://ftpmaster.internal/ubuntu plucky/main s390x libgpgme11t64 s390x 1.23.2-5ubuntu4 [151 kB]
182s Fetched 252 kB in 0s (596 kB/s)
182s (Reading database ... 
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(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 55510 files and directories currently installed.)
182s Preparing to unpack .../python3-minimal_3.12.7-1_s390x.deb ...
182s Unpacking python3-minimal (3.12.7-1) over (3.12.6-0ubuntu1) ...
182s Setting up python3-minimal (3.12.7-1) ...
183s (Reading database ... 
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(Reading database ... 30%
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(Reading database ... 45%
(Reading database ... 50%
(Reading database ... 55%
(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 55510 files and directories currently installed.)
183s Preparing to unpack .../python3_3.12.7-1_s390x.deb ...
183s Unpacking python3 (3.12.7-1) over (3.12.6-0ubuntu1) ...
183s Preparing to unpack .../libpython3-stdlib_3.12.7-1_s390x.deb ...
183s Unpacking libpython3-stdlib:s390x (3.12.7-1) over (3.12.6-0ubuntu1) ...
183s Selecting previously unselected package python3.13-gdbm.
183s Preparing to unpack .../python3.13-gdbm_3.13.0-2_s390x.deb ...
183s Unpacking python3.13-gdbm (3.13.0-2) ...
183s Preparing to unpack .../python3-gdbm_3.12.7-1_s390x.deb ...
183s Unpacking python3-gdbm:s390x (3.12.7-1) over (3.12.6-1ubuntu1) ...
183s Preparing to unpack .../libgpgme11t64_1.23.2-5ubuntu4_s390x.deb ...
183s Unpacking libgpgme11t64:s390x (1.23.2-5ubuntu4) over (1.18.0-4.1ubuntu4) ...
183s Setting up libgpgme11t64:s390x (1.23.2-5ubuntu4) ...
183s Setting up python3.13-gdbm (3.13.0-2) ...
183s Setting up libpython3-stdlib:s390x (3.12.7-1) ...
183s Setting up python3 (3.12.7-1) ...
183s Setting up python3-gdbm:s390x (3.12.7-1) ...
183s Processing triggers for man-db (2.12.1-3) ...
183s Processing triggers for libc-bin (2.40-1ubuntu3) ...
183s Reading package lists...
184s Building dependency tree...
184s Reading state information...
184s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
184s Hit:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease
184s Hit:2 http://ftpmaster.internal/ubuntu plucky InRelease
184s Hit:3 http://ftpmaster.internal/ubuntu plucky-updates InRelease
184s Hit:4 http://ftpmaster.internal/ubuntu plucky-security InRelease
185s Reading package lists...
185s Reading package lists...
185s Building dependency tree...
185s Reading state information...
185s Calculating upgrade...
185s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
185s Reading package lists...
185s Building dependency tree...
185s Reading state information...
185s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
188s autopkgtest [11:01:44]: testbed running kernel: Linux 6.11.0-8-generic #8-Ubuntu SMP Mon Sep 16 12:49:35 UTC 2024
189s autopkgtest [11:01:45]: @@@@@@@@@@@@@@@@@@@@ apt-source openbabel
194s Get:1 http://ftpmaster.internal/ubuntu plucky/universe openbabel 3.1.1+dfsg-11ubuntu1 (dsc) [2896 B]
194s Get:2 http://ftpmaster.internal/ubuntu plucky/universe openbabel 3.1.1+dfsg-11ubuntu1 (tar) [21.8 MB]
194s Get:3 http://ftpmaster.internal/ubuntu plucky/universe openbabel 3.1.1+dfsg-11ubuntu1 (diff) [22.0 kB]
194s gpgv: Signature made Mon Oct 21 10:43:56 2024 UTC
194s gpgv:                using RSA key 568BF22A66337CBFC9A6B9B72C83DBC8E9BD0E37
194s gpgv: Can't check signature: No public key
194s dpkg-source: warning: cannot verify inline signature for ./openbabel_3.1.1+dfsg-11ubuntu1.dsc: no acceptable signature found
196s dpkg-source: warning: diff 'src/debian/patches/2315.patch' patches file src/src/CMakeLists.txt more than once
196s dpkg-source: warning: diff 'src/debian/patches/2315.patch' patches file src/CMakeLists.txt more than once
196s dpkg-source: warning: diff 'src/debian/patches/2315.patch' patches file src/OpenBabel3Config.cmake.in more than once
197s autopkgtest [11:01:53]: testing package openbabel version 3.1.1+dfsg-11ubuntu1
197s autopkgtest [11:01:53]: build not needed
207s autopkgtest [11:02:03]: test python3: preparing testbed
214s Reading package lists...
215s Building dependency tree...
215s Reading state information...
215s Starting pkgProblemResolver with broken count: 0
215s Starting 2 pkgProblemResolver with broken count: 0
215s Done
215s The following additional packages will be installed:
215s   adwaita-icon-theme at-spi2-common dconf-gsettings-backend dconf-service
215s   fontconfig fontconfig-config fonts-dejavu-core fonts-dejavu-mono
215s   gtk-update-icon-cache hicolor-icon-theme humanity-icon-theme
215s   libatk-bridge2.0-0t64 libatk1.0-0t64 libatspi2.0-0t64 libavahi-client3
215s   libavahi-common-data libavahi-common3 libboost-iostreams1.83.0
215s   libcairo-gobject2 libcairo2 libchemistry-openbabel-perl libcolord2
215s   libcups2t64 libdatrie1 libdconf1 libdeflate0 libepoxy0 libfontconfig1
215s   libfreetype6 libgdk-pixbuf-2.0-0 libgdk-pixbuf2.0-common libgomp1
215s   libgraphite2-3 libgtk-3-0t64 libgtk-3-common libharfbuzz0b libice6 libinchi1
215s   libjbig0 libjpeg-turbo8 libjpeg8 libjs-jquery liblcms2-2 libmaeparser1
215s   libnotify4 libopenbabel-dev libopenbabel-doc libopenbabel7 libpango-1.0-0
215s   libpangocairo-1.0-0 libpangoft2-1.0-0 libpcre2-32-0 libpixman-1-0
215s   libsharpyuv0 libsm6 libthai-data libthai0 libtiff6 libwayland-client0
215s   libwayland-cursor0 libwayland-egl1 libwebp7 libwxbase3.2-1t64
215s   libwxgtk3.2-1t64 libxcb-render0 libxcb-shm0 libxcomposite1 libxcursor1
215s   libxdamage1 libxfixes3 libxi6 libxinerama1 libxrandr2 libxrender1 libxtst6
215s   openbabel openbabel-gui python3-openbabel ubuntu-mono x11-common
215s Suggested packages:
215s   adwaita-icon-theme-legacy colord cups-common gvfs liblcms2-utils
215s   notification-daemon
215s Recommended packages:
215s   librsvg2-common at-spi2-core libgdk-pixbuf2.0-bin libgtk-3-bin
215s   javascript-common
215s The following NEW packages will be installed:
215s   adwaita-icon-theme at-spi2-common autopkgtest-satdep dconf-gsettings-backend
215s   dconf-service fontconfig fontconfig-config fonts-dejavu-core
215s   fonts-dejavu-mono gtk-update-icon-cache hicolor-icon-theme
215s   humanity-icon-theme libatk-bridge2.0-0t64 libatk1.0-0t64 libatspi2.0-0t64
215s   libavahi-client3 libavahi-common-data libavahi-common3
215s   libboost-iostreams1.83.0 libcairo-gobject2 libcairo2
215s   libchemistry-openbabel-perl libcolord2 libcups2t64 libdatrie1 libdconf1
215s   libdeflate0 libepoxy0 libfontconfig1 libfreetype6 libgdk-pixbuf-2.0-0
215s   libgdk-pixbuf2.0-common libgomp1 libgraphite2-3 libgtk-3-0t64
215s   libgtk-3-common libharfbuzz0b libice6 libinchi1 libjbig0 libjpeg-turbo8
215s   libjpeg8 libjs-jquery liblcms2-2 libmaeparser1 libnotify4 libopenbabel-dev
215s   libopenbabel-doc libopenbabel7 libpango-1.0-0 libpangocairo-1.0-0
215s   libpangoft2-1.0-0 libpcre2-32-0 libpixman-1-0 libsharpyuv0 libsm6
215s   libthai-data libthai0 libtiff6 libwayland-client0 libwayland-cursor0
215s   libwayland-egl1 libwebp7 libwxbase3.2-1t64 libwxgtk3.2-1t64 libxcb-render0
215s   libxcb-shm0 libxcomposite1 libxcursor1 libxdamage1 libxfixes3 libxi6
215s   libxinerama1 libxrandr2 libxrender1 libxtst6 openbabel openbabel-gui
215s   python3-openbabel ubuntu-mono x11-common
215s 0 upgraded, 81 newly installed, 0 to remove and 0 not upgraded.
215s Need to get 30.8 MB/30.8 MB of archives.
215s After this operation, 150 MB of additional disk space will be used.
215s Get:1 /tmp/autopkgtest.txi8R9/1-autopkgtest-satdep.deb autopkgtest-satdep s390x 0 [748 B]
215s Get:2 http://ftpmaster.internal/ubuntu plucky/main s390x libgdk-pixbuf2.0-common all 2.42.12+dfsg-1 [7888 B]
215s Get:3 http://ftpmaster.internal/ubuntu plucky/main s390x libjpeg-turbo8 s390x 2.1.5-2ubuntu2 [150 kB]
215s Get:4 http://ftpmaster.internal/ubuntu plucky/main s390x libjpeg8 s390x 8c-2ubuntu11 [2146 B]
215s Get:5 http://ftpmaster.internal/ubuntu plucky/main s390x libdeflate0 s390x 1.22-1 [46.1 kB]
215s Get:6 http://ftpmaster.internal/ubuntu plucky/main s390x libjbig0 s390x 2.1-6.1ubuntu2 [33.1 kB]
215s Get:7 http://ftpmaster.internal/ubuntu plucky/main s390x libsharpyuv0 s390x 1.4.0-0.1 [16.2 kB]
215s Get:8 http://ftpmaster.internal/ubuntu plucky/main s390x libwebp7 s390x 1.4.0-0.1 [204 kB]
215s Get:9 http://ftpmaster.internal/ubuntu plucky/main s390x libtiff6 s390x 4.5.1+git230720-4ubuntu4 [217 kB]
215s Get:10 http://ftpmaster.internal/ubuntu plucky/main s390x libgdk-pixbuf-2.0-0 s390x 2.42.12+dfsg-1 [152 kB]
215s Get:11 http://ftpmaster.internal/ubuntu plucky/main s390x gtk-update-icon-cache s390x 4.16.5+ds-1 [52.0 kB]
215s Get:12 http://ftpmaster.internal/ubuntu plucky/main s390x hicolor-icon-theme all 0.18-1 [13.5 kB]
216s Get:13 http://ftpmaster.internal/ubuntu plucky/main s390x humanity-icon-theme all 0.6.16 [1282 kB]
216s Get:14 http://ftpmaster.internal/ubuntu plucky/main s390x ubuntu-mono all 24.04-0ubuntu1 [151 kB]
216s Get:15 http://ftpmaster.internal/ubuntu plucky/main s390x adwaita-icon-theme all 47.0-2 [525 kB]
216s Get:16 http://ftpmaster.internal/ubuntu plucky/main s390x at-spi2-common all 2.54.0-1 [8774 B]
216s Get:17 http://ftpmaster.internal/ubuntu plucky/main s390x libdconf1 s390x 0.40.0-4build2 [40.3 kB]
216s Get:18 http://ftpmaster.internal/ubuntu plucky/main s390x dconf-service s390x 0.40.0-4build2 [28.6 kB]
216s Get:19 http://ftpmaster.internal/ubuntu plucky/main s390x dconf-gsettings-backend s390x 0.40.0-4build2 [23.2 kB]
216s Get:20 http://ftpmaster.internal/ubuntu plucky/main s390x libfreetype6 s390x 2.13.3+dfsg-1 [431 kB]
216s Get:21 http://ftpmaster.internal/ubuntu plucky/main s390x fonts-dejavu-mono all 2.37-8 [502 kB]
216s Get:22 http://ftpmaster.internal/ubuntu plucky/main s390x fonts-dejavu-core all 2.37-8 [835 kB]
216s Get:23 http://ftpmaster.internal/ubuntu plucky/main s390x fontconfig-config s390x 2.15.0-1.1ubuntu2 [37.4 kB]
216s Get:24 http://ftpmaster.internal/ubuntu plucky/main s390x libfontconfig1 s390x 2.15.0-1.1ubuntu2 [150 kB]
216s Get:25 http://ftpmaster.internal/ubuntu plucky/main s390x fontconfig s390x 2.15.0-1.1ubuntu2 [191 kB]
216s Get:26 http://ftpmaster.internal/ubuntu plucky/main s390x libatk1.0-0t64 s390x 2.54.0-1 [54.7 kB]
216s Get:27 http://ftpmaster.internal/ubuntu plucky/main s390x libxi6 s390x 2:1.8.2-1 [35.4 kB]
216s Get:28 http://ftpmaster.internal/ubuntu plucky/main s390x libatspi2.0-0t64 s390x 2.54.0-1 [79.8 kB]
216s Get:29 http://ftpmaster.internal/ubuntu plucky/main s390x libatk-bridge2.0-0t64 s390x 2.54.0-1 [66.4 kB]
216s Get:30 http://ftpmaster.internal/ubuntu plucky/main s390x libavahi-common-data s390x 0.8-13ubuntu6 [29.7 kB]
216s Get:31 http://ftpmaster.internal/ubuntu plucky/main s390x libavahi-common3 s390x 0.8-13ubuntu6 [24.1 kB]
216s Get:32 http://ftpmaster.internal/ubuntu plucky/main s390x libavahi-client3 s390x 0.8-13ubuntu6 [27.2 kB]
216s Get:33 http://ftpmaster.internal/ubuntu plucky/main s390x libboost-iostreams1.83.0 s390x 1.83.0-3.2ubuntu2 [259 kB]
216s Get:34 http://ftpmaster.internal/ubuntu plucky/main s390x libpixman-1-0 s390x 0.44.0-3 [201 kB]
216s Get:35 http://ftpmaster.internal/ubuntu plucky/main s390x libxcb-render0 s390x 1.17.0-2 [17.0 kB]
216s Get:36 http://ftpmaster.internal/ubuntu plucky/main s390x libxcb-shm0 s390x 1.17.0-2 [5862 B]
216s Get:37 http://ftpmaster.internal/ubuntu plucky/main s390x libxrender1 s390x 1:0.9.10-1.1build1 [20.4 kB]
216s Get:38 http://ftpmaster.internal/ubuntu plucky/main s390x libcairo2 s390x 1.18.2-2 [580 kB]
216s Get:39 http://ftpmaster.internal/ubuntu plucky/main s390x libcairo-gobject2 s390x 1.18.2-2 [127 kB]
216s Get:40 http://ftpmaster.internal/ubuntu plucky/main s390x libgomp1 s390x 14.2.0-8ubuntu1 [151 kB]
216s Get:41 http://ftpmaster.internal/ubuntu plucky/universe s390x libinchi1 s390x 1.03+dfsg-4build1 [527 kB]
216s Get:42 http://ftpmaster.internal/ubuntu plucky/universe s390x libmaeparser1 s390x 1.3.1-1build1 [107 kB]
216s Get:43 http://ftpmaster.internal/ubuntu plucky/universe s390x libopenbabel7 s390x 3.1.1+dfsg-11ubuntu1 [3455 kB]
216s Get:44 http://ftpmaster.internal/ubuntu plucky/universe s390x libchemistry-openbabel-perl s390x 3.1.1+dfsg-11ubuntu1 [768 kB]
216s Get:45 http://ftpmaster.internal/ubuntu plucky/main s390x liblcms2-2 s390x 2.16-2 [175 kB]
216s Get:46 http://ftpmaster.internal/ubuntu plucky/main s390x libcolord2 s390x 1.4.7-1build2 [151 kB]
216s Get:47 http://ftpmaster.internal/ubuntu plucky/main s390x libcups2t64 s390x 2.4.10-1ubuntu2 [281 kB]
216s Get:48 http://ftpmaster.internal/ubuntu plucky/main s390x libdatrie1 s390x 0.2.13-3build1 [20.6 kB]
216s Get:49 http://ftpmaster.internal/ubuntu plucky/main s390x libepoxy0 s390x 1.5.10-2 [222 kB]
216s Get:50 http://ftpmaster.internal/ubuntu plucky/main s390x libgraphite2-3 s390x 1.3.14-2ubuntu1 [79.8 kB]
216s Get:51 http://ftpmaster.internal/ubuntu plucky/main s390x libharfbuzz0b s390x 10.0.1-1 [536 kB]
216s Get:52 http://ftpmaster.internal/ubuntu plucky/main s390x libthai-data all 0.1.29-2build1 [158 kB]
216s Get:53 http://ftpmaster.internal/ubuntu plucky/main s390x libthai0 s390x 0.1.29-2build1 [20.7 kB]
216s Get:54 http://ftpmaster.internal/ubuntu plucky/main s390x libpango-1.0-0 s390x 1.54.0+ds-3 [249 kB]
216s Get:55 http://ftpmaster.internal/ubuntu plucky/main s390x libpangoft2-1.0-0 s390x 1.54.0+ds-3 [49.5 kB]
216s Get:56 http://ftpmaster.internal/ubuntu plucky/main s390x libpangocairo-1.0-0 s390x 1.54.0+ds-3 [28.0 kB]
216s Get:57 http://ftpmaster.internal/ubuntu plucky/main s390x libwayland-client0 s390x 1.23.0-1 [27.6 kB]
216s Get:58 http://ftpmaster.internal/ubuntu plucky/main s390x libwayland-cursor0 s390x 1.23.0-1 [11.5 kB]
216s Get:59 http://ftpmaster.internal/ubuntu plucky/main s390x libwayland-egl1 s390x 1.23.0-1 [5584 B]
216s Get:60 http://ftpmaster.internal/ubuntu plucky/main s390x libxcomposite1 s390x 1:0.4.6-1 [6588 B]
216s Get:61 http://ftpmaster.internal/ubuntu plucky/main s390x libxfixes3 s390x 1:6.0.0-2build1 [11.3 kB]
216s Get:62 http://ftpmaster.internal/ubuntu plucky/main s390x libxcursor1 s390x 1:1.2.2-1 [22.7 kB]
216s Get:63 http://ftpmaster.internal/ubuntu plucky/main s390x libxdamage1 s390x 1:1.1.6-1build1 [6156 B]
216s Get:64 http://ftpmaster.internal/ubuntu plucky/main s390x libxinerama1 s390x 2:1.1.4-3build1 [6476 B]
216s Get:65 http://ftpmaster.internal/ubuntu plucky/main s390x libxrandr2 s390x 2:1.5.4-1 [20.8 kB]
216s Get:66 http://ftpmaster.internal/ubuntu plucky/main s390x libgtk-3-common all 3.24.43-3ubuntu2 [1202 kB]
216s Get:67 http://ftpmaster.internal/ubuntu plucky/main s390x libgtk-3-0t64 s390x 3.24.43-3ubuntu2 [2934 kB]
216s Get:68 http://ftpmaster.internal/ubuntu plucky/main s390x x11-common all 1:7.7+23ubuntu3 [21.7 kB]
216s Get:69 http://ftpmaster.internal/ubuntu plucky/main s390x libice6 s390x 2:1.1.1-1 [45.4 kB]
216s Get:70 http://ftpmaster.internal/ubuntu plucky/main s390x libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [328 kB]
216s Get:71 http://ftpmaster.internal/ubuntu plucky/main s390x libnotify4 s390x 0.8.3-1build2 [25.5 kB]
216s Get:72 http://ftpmaster.internal/ubuntu plucky/universe s390x libopenbabel-dev s390x 3.1.1+dfsg-11ubuntu1 [181 kB]
216s Get:73 http://ftpmaster.internal/ubuntu plucky/universe s390x libopenbabel-doc all 3.1.1+dfsg-11ubuntu1 [5610 kB]
217s Get:74 http://ftpmaster.internal/ubuntu plucky/main s390x libpcre2-32-0 s390x 10.42-4ubuntu3 [221 kB]
217s Get:75 http://ftpmaster.internal/ubuntu plucky/main s390x libsm6 s390x 2:1.2.4-1 [18.4 kB]
217s Get:76 http://ftpmaster.internal/ubuntu plucky/universe s390x libwxbase3.2-1t64 s390x 3.2.5+dfsg-1 [911 kB]
217s Get:77 http://ftpmaster.internal/ubuntu plucky/main s390x libxtst6 s390x 2:1.2.3-1.1build1 [13.4 kB]
217s Get:78 http://ftpmaster.internal/ubuntu plucky/universe s390x libwxgtk3.2-1t64 s390x 3.2.5+dfsg-1 [4686 kB]
217s Get:79 http://ftpmaster.internal/ubuntu plucky/universe s390x openbabel s390x 3.1.1+dfsg-11ubuntu1 [132 kB]
217s Get:80 http://ftpmaster.internal/ubuntu plucky/universe s390x openbabel-gui s390x 3.1.1+dfsg-11ubuntu1 [88.7 kB]
217s Get:81 http://ftpmaster.internal/ubuntu plucky/universe s390x python3-openbabel s390x 3.1.1+dfsg-11ubuntu1 [613 kB]
217s Fetched 30.8 MB in 2s (15.3 MB/s)
217s Selecting previously unselected package libgdk-pixbuf2.0-common.
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217s Preparing to unpack .../00-libgdk-pixbuf2.0-common_2.42.12+dfsg-1_all.deb ...
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217s Selecting previously unselected package libjpeg-turbo8:s390x.
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217s Selecting previously unselected package libdeflate0:s390x.
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217s Selecting previously unselected package libgdk-pixbuf-2.0-0:s390x.
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217s Selecting previously unselected package gtk-update-icon-cache.
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217s No diversion 'diversion of /usr/sbin/update-icon-caches to /usr/sbin/update-icon-caches.gtk2 by libgtk-3-bin', none removed.
217s No diversion 'diversion of /usr/share/man/man8/update-icon-caches.8.gz to /usr/share/man/man8/update-icon-caches.gtk2.8.gz by libgtk-3-bin', none removed.
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218s Selecting previously unselected package libatk-bridge2.0-0t64:s390x.
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218s Selecting previously unselected package libavahi-common-data:s390x.
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218s Selecting previously unselected package libavahi-common3:s390x.
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218s Selecting previously unselected package libavahi-client3:s390x.
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218s Selecting previously unselected package libboost-iostreams1.83.0:s390x.
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218s Selecting previously unselected package libpixman-1-0:s390x.
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218s Selecting previously unselected package libxrender1:s390x.
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219s Selecting previously unselected package libpangocairo-1.0-0:s390x.
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219s Selecting previously unselected package libxcomposite1:s390x.
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220s Setting up libwayland-egl1:s390x (1.23.0-1) ...
220s Setting up libjs-jquery (3.6.1+dfsg+~3.5.14-1) ...
220s Setting up libwxbase3.2-1t64:s390x (3.2.5+dfsg-1) ...
220s Setting up libxcomposite1:s390x (1:0.4.6-1) ...
220s Setting up libinchi1 (1.03+dfsg-4build1) ...
220s Setting up libwayland-client0:s390x (1.23.0-1) ...
220s Setting up libjpeg8:s390x (8c-2ubuntu11) ...
220s Setting up libice6:s390x (2:1.1.1-1) ...
220s Setting up libatk1.0-0t64:s390x (2.54.0-1) ...
220s Setting up fontconfig-config (2.15.0-1.1ubuntu2) ...
220s Setting up libxtst6:s390x (2:1.2.3-1.1build1) ...
220s Setting up libxcursor1:s390x (1:1.2.2-1) ...
220s Setting up libavahi-common3:s390x (0.8-13ubuntu6) ...
220s Setting up dconf-service (0.40.0-4build2) ...
220s Setting up libopenbabel-doc (3.1.1+dfsg-11ubuntu1) ...
220s Setting up libmaeparser1:s390x (1.3.1-1build1) ...
220s Setting up libthai0:s390x (0.1.29-2build1) ...
220s Setting up libtiff6:s390x (4.5.1+git230720-4ubuntu4) ...
220s Setting up libwayland-cursor0:s390x (1.23.0-1) ...
220s Setting up libgdk-pixbuf-2.0-0:s390x (2.42.12+dfsg-1) ...
220s Setting up libfontconfig1:s390x (2.15.0-1.1ubuntu2) ...
220s Setting up libsm6:s390x (2:1.2.4-1) ...
220s Setting up libavahi-client3:s390x (0.8-13ubuntu6) ...
220s Setting up libatk-bridge2.0-0t64:s390x (2.54.0-1) ...
220s Setting up gtk-update-icon-cache (4.16.5+ds-1) ...
220s Setting up fontconfig (2.15.0-1.1ubuntu2) ...
222s Regenerating fonts cache... done.
222s Setting up dconf-gsettings-backend:s390x (0.40.0-4build2) ...
222s Setting up libpango-1.0-0:s390x (1.54.0+ds-3) ...
222s Setting up libcairo2:s390x (1.18.2-2) ...
222s Setting up libnotify4:s390x (0.8.3-1build2) ...
222s Setting up libcairo-gobject2:s390x (1.18.2-2) ...
222s Setting up libpangoft2-1.0-0:s390x (1.54.0+ds-3) ...
222s Setting up libcups2t64:s390x (2.4.10-1ubuntu2) ...
222s Setting up libgtk-3-common (3.24.43-3ubuntu2) ...
222s Setting up libpangocairo-1.0-0:s390x (1.54.0+ds-3) ...
222s Setting up libopenbabel7 (3.1.1+dfsg-11ubuntu1) ...
222s Setting up libopenbabel-dev (3.1.1+dfsg-11ubuntu1) ...
222s Setting up libchemistry-openbabel-perl (3.1.1+dfsg-11ubuntu1) ...
222s Setting up python3-openbabel (3.1.1+dfsg-11ubuntu1) ...
222s Setting up openbabel (3.1.1+dfsg-11ubuntu1) ...
222s Setting up adwaita-icon-theme (47.0-2) ...
222s update-alternatives: using /usr/share/icons/Adwaita/cursor.theme to provide /usr/share/icons/default/index.theme (x-cursor-theme) in auto mode
222s Setting up humanity-icon-theme (0.6.16) ...
222s Setting up ubuntu-mono (24.04-0ubuntu1) ...
222s Processing triggers for man-db (2.12.1-3) ...
222s Processing triggers for libglib2.0-0t64:s390x (2.82.1-0ubuntu1) ...
222s Setting up libgtk-3-0t64:s390x (3.24.43-3ubuntu2) ...
223s Setting up libwxgtk3.2-1t64:s390x (3.2.5+dfsg-1) ...
223s Processing triggers for libc-bin (2.40-1ubuntu3) ...
223s Setting up openbabel-gui (3.1.1+dfsg-11ubuntu1) ...
223s Setting up autopkgtest-satdep (0) ...
228s (Reading database ... 70933 files and directories currently installed.)
228s Removing autopkgtest-satdep (0) ...
229s autopkgtest [11:02:25]: test python3: [-----------------------
229s Running test/testRInChI.py ...
229s /tmp/autopkgtest.txi8R9/build.XhX/src/test/testRInChI.py:1: SyntaxWarning: invalid escape sequence '\P'
229s   """Test OpenBabel executables from Python
229s /tmp/autopkgtest.txi8R9/build.XhX/src/test/testbabel.py:1: SyntaxWarning: invalid escape sequence '\P'
229s   """Test OpenBabel executables from Python
229s /tmp/autopkgtest.txi8R9/build.XhX/src/test/testbabel.py:101: SyntaxWarning: invalid escape sequence '\d'
229s   pat = "(-?\d.*) molecule(?:s?) converted"
230s ..
230s ----------------------------------------------------------------------
230s Ran 2 tests in 0.455s
230s 
230s OK
230s Running test/test_pybel.py ...
230s /tmp/autopkgtest.txi8R9/build.XhX/src/test/test_pybel.py:1: SyntaxWarning: invalid escape sequence '\P'
230s   """Test OpenBabel Python bindings
230s /tmp/autopkgtest.txi8R9/build.XhX/src/test/testbindings.py:1: SyntaxWarning: invalid escape sequence '\P'
230s   """Test OpenBabel Python bindings
230s .........................==============================
230s *** Open Babel Warning  in WriteMolecule
230s   No 2D or 3D coordinates exist. Stereochemical information will be stored using an Open Babel extension. To generate 2D or 3D coordinates instead use --gen2D or --gen3D.
230s .....==============================
230s *** Open Babel Error  in SMARTSError
230s   SMARTS Error:
230s [#NOEL][#NOEL]
230s   ^
230s 
230s ....
230s ----------------------------------------------------------------------
230s Ran 34 tests in 0.268s
230s 
230s OK
230s Running test/testbabel.py ...
230s /tmp/autopkgtest.txi8R9/build.XhX/src/test/testbabel.py:1: SyntaxWarning: invalid escape sequence '\P'
230s   """Test OpenBabel executables from Python
230s /tmp/autopkgtest.txi8R9/build.XhX/src/test/testbabel.py:101: SyntaxWarning: invalid escape sequence '\d'
230s   pat = "(-?\d.*) molecule(?:s?) converted"
231s ......./usr/lib/python3.12/subprocess.py:1010: RuntimeWarning: line buffering (buffering=1) isn't supported in binary mode, the default buffer size will be used
231s   self.stdin = io.open(p2cwrite, 'wb', bufsize)
231s /usr/lib/python3.12/subprocess.py:1016: RuntimeWarning: line buffering (buffering=1) isn't supported in binary mode, the default buffer size will be used
231s   self.stdout = io.open(c2pread, 'rb', bufsize)
231s /usr/lib/python3.12/subprocess.py:1021: RuntimeWarning: line buffering (buffering=1) isn't supported in binary mode, the default buffer size will be used
231s   self.stderr = io.open(errread, 'rb', bufsize)
232s ......
232s ----------------------------------------------------------------------
232s Ran 13 tests in 1.910s
232s 
232s OK
232s Running test/testbindings.py ...
232s /tmp/autopkgtest.txi8R9/build.XhX/src/test/testbindings.py:1: SyntaxWarning: invalid escape sequence '\P'
232s   """Test OpenBabel Python bindings
232s ...==============================
232s *** Open Babel Warning  in WriteMolecule
232s   No 2D or 3D coordinates exist. Stereochemical information will be stored using an Open Babel extension. To generate 2D or 3D coordinates instead use --gen2D or --gen3D.
232s ....==============================
232s *** Open Babel Warning  in ParseSmiles
232s   Too many greater-than signs in SMILES string
232s 
232s ==============================
232s *** Open Babel Warning  in ParseSmiles
232s   Too many greater-than signs in SMILES string
232s 
232s ==============================
232s *** Open Babel Warning  in ParseSmiles
232s   Too many greater-than signs in SMILES string
232s 
232s ==============================
232s *** Open Babel Warning  in ParseSmiles
232s   Invalid reaction SMILES string: only a single '>' sign found (two required to be valid).
232s ==============================
232s *** Open Babel Warning  in ParseSmiles
232s   Invalid reaction SMILES string: only a single '>' sign found (two required to be valid).
232s ==============================
232s *** Open Babel Warning  in ParseSmiles
232s   Invalid reaction SMILES string: only a single '>' sign found (two required to be valid).
232s ..==============================
232s *** Open Babel Warning  in IsValid
232s   The molecule is not marked as a reaction. Use SetIsReaction().
232s ==============================
232s *** Open Babel Warning  in IsValid
232s   Reaction roles should be in the range 0 to 3 inclusive.
232s ==============================
232s *** Open Babel Warning  in IsValid
232s   Reaction component Ids should all be non-zero positive integers.
232s ==============================
232s *** Open Babel Warning  in IsValid
232s   The molecule contains an atom that is missing a reaction component Id. Use SetComponentId().
232s ==============================
232s *** Open Babel Warning  in IsValid
232s   A reaction component Id has been stored using a data type that is not an OBPairInteger.
232s ==============================
232s *** Open Babel Warning  in IsValid
232s   The molecule contains a connected component that contains atoms with different reaction component Ids. All atoms in a particular connected component should have the same value.
232s ==============================
232s *** Open Babel Warning  in IsValid
232s   The molecule contains a connected component that contains atoms with different reaction roles. All atoms in a particular connected component should have the same role.
232s ...........==============================
232s *** Open Babel Warning  in ReadMolecule
232s   WARNING: Problem interpreting the valence field of an atom
232s The valence field specifies a valence 0 that is
232s less than the observed explicit valence 1.
232s 
232s .==============================
232s *** Open Babel Warning  in WriteMolecule
232s   No 2D or 3D coordinates exist. Stereochemical information will be stored using an Open Babel extension. To generate 2D or 3D coordinates instead use --gen2D or --gen3D.
232s ..........==============================
232s *** Open Babel Error  in ParseComplex
232s   SMILES string contains a character '#' which is invalid
232s ==============================
232s *** Open Babel Error  in ParseComplex
232s   Element number must be <= 255)
232s ==============================
232s *** Open Babel Error  in ParseComplex
232s   SMILES string contains a character '#' which is invalid
232s ..==============================
232s *** Open Babel Warning  in ParseRingBond
232s   Warning: Tetrahedral stereo specified for atom with more than 4 connections.
232s ==============================
232s *** Open Babel Warning  in ParseSmiles
232s   Failed to kekulize aromatic SMILES
232s 
271s .../tmp/autopkgtest.txi8R9/build.XhX/src/debian/tests/python3: line 9:  3673 Killed                  python3 ${TEST}
271s /tmp/autopkgtest.txi8R9/build.XhX/src/test/testcdjsonformat.py:1: SyntaxWarning: invalid escape sequence '\P'
271s   """Test ChemDoodle JSON format using the OpenBabel Python bindings
271s Ignoring test/testbindings.py on s390x ...
271s Running test/testcdjsonformat.py ...
272s ..........Running test/testdistgeom.py ...
272s 
272s ----------------------------------------------------------------------
272s Ran 10 tests in 0.004s
272s 
272s OK
272s /tmp/autopkgtest.txi8R9/build.XhX/src/test/testdistgeom.py:1: SyntaxWarning: invalid escape sequence '\P'
272s   """Test OpenBabel executables from Python
272s /usr/lib/python3.12/subprocess.py:1010: RuntimeWarning: line buffering (buffering=1) isn't supported in binary mode, the default buffer size will be used
272s   self.stdin = io.open(p2cwrite, 'wb', bufsize)
272s /usr/lib/python3.12/subprocess.py:1016: RuntimeWarning: line buffering (buffering=1) isn't supported in binary mode, the default buffer size will be used
272s   self.stdout = io.open(c2pread, 'rb', bufsize)
272s /usr/lib/python3.12/subprocess.py:1021: RuntimeWarning: line buffering (buffering=1) isn't supported in binary mode, the default buffer size will be used
272s   self.stderr = io.open(errread, 'rb', bufsize)
295s .
295s ----------------------------------------------------------------------
295s Ran 1 test in 23.315s
295s 
295s OK
295s /tmp/autopkgtest.txi8R9/build.XhX/src/test/testexample.py:1: SyntaxWarning: invalid escape sequence '\P'
295s   """Example test that uses the OpenBabel Python bindings
295s Running test/testexample.py ...
295s ..
295s ----------------------------------------------------------------------
295s Ran 2 tests in 0.000s
295s 
295s OK
295s /tmp/autopkgtest.txi8R9/build.XhX/src/test/testfastsearch.py:1: SyntaxWarning: invalid escape sequence '\P'
295s   """Test OpenBabel executables from Python
295s /tmp/autopkgtest.txi8R9/build.XhX/src/test/testfastsearch.py:30: SyntaxWarning: invalid escape sequence '\C'
295s Running test/testfastsearch.py ...
295s   smiles = """C12(C(N(C(=O)C)c3c2cccc3)=O)Nc2c(ccc(c2N1)OCCCC)OCCCC
295s .
295s ----------------------------------------------------------------------
295s Ran 1 test in 0.035s
295s 
295s OK
295s /tmp/autopkgtest.txi8R9/build.XhX/src/test/testkekule.py:1: SyntaxWarning: invalid escape sequence '\P'
295s   """Test OpenBabel executables from Python
295s Running test/testkekule.py ...
295s /usr/lib/python3.12/subprocess.py:1010: RuntimeWarning: line buffering (buffering=1) isn't supported in binary mode, the default buffer size will be used
295s   self.stdin = io.open(p2cwrite, 'wb', bufsize)
295s /usr/lib/python3.12/subprocess.py:1016: RuntimeWarning: line buffering (buffering=1) isn't supported in binary mode, the default buffer size will be used
295s   self.stdout = io.open(c2pread, 'rb', bufsize)
295s /usr/lib/python3.12/subprocess.py:1021: RuntimeWarning: line buffering (buffering=1) isn't supported in binary mode, the default buffer size will be used
295s   self.stderr = io.open(errread, 'rb', bufsize)
295s ...
295s ----------------------------------------------------------------------
295s Ran 3 tests in 0.251s
295s 
295s OK
295s Running test/testobconv_writers.py ...
295s ........................F.................................................................F..................................................
295s ======================================================================
295s FAIL: test_default (__main__.TestCSR.test_default)
295s ----------------------------------------------------------------------
295s Traceback (most recent call last):
295s   File "/tmp/autopkgtest.txi8R9/build.XhX/src/test/testobconv_writers.py", line 1230, in test_default
295s     self.assertBinaryWriters(self.fmt, b'\x04\x00\x00\x00V33 \x04\x00\x00\x00\x08\x00\x00\x00\x07\x00\x00\x00\x01\x00\x00\x00\x08\x00\x00\x00d\x00\x00\x00phenol                                                                                             \x00d\x00\x00\x00\x04\x00\x00\x00\x07\x00\x00\x00\x04\x00\x00\x00\\\x00\x00\x00\x01\x00\x00\x00\x05\x17+j0\xad\x04\xc0phenol:1                                                                       \x00\\\x00\x00\x008\x00\x00\x00\x98\xdd\x93\x87\x85Z\xf9?r\x8a\x8e\xe4\xf2\x1f\xf9?V\x0e-\xb2\x9do\x03@?W[\xb1\xbfl\n@\n\xd7\xa3p=\x8a\n@\x00\x00\x00\x00\x00\x00\x00\x005^\xbaI\x0c\x02\xf0\xbf8\x00\x00\x008\x00\x00\x00V}\xae\xb6b\x7f\x99\xbf\x9e\xef\xa7\xc6K7\xef?\xe4\x83\x9e\xcd\xaa\xcf\xf7?\xc4\xb1.n\xa3\x01\xf0?\x00\x00\x00\x00\x00\x00\x00\x80\x00\x00\x00\x00\x00\x00\x00\x00\x88\x85Z\xd3\xbc\xe3t?8\x00\x00\x008\x00\x00\x00\x00\x00\x00\x00\x00\x00\x00\x00\x00\x00\x00\x00\x00\x00\x00\x00\x00\x00\x00\x00\x00\x00\x00\x00\x00\x00\x00\x00\x00\x00\x00\x00\x00\x00\x00\x00\x00\x00\x00\x00\x00\x00\x00\x00\x00\x00\x00\x00\x00\x00\x00\x00\x00\x00\x00\x008\x00\x00\x00')
295s   File "/tmp/autopkgtest.txi8R9/build.XhX/src/test/testobconv_writers.py", line 283, in assertBinaryWriters
295s     test_binary_write_string(self, mol, conv, expected_output, normalize)
295s   File "/tmp/autopkgtest.txi8R9/build.XhX/src/test/testobconv_writers.py", line 176, in test_binary_write_string
295s     test_case.assertEqual(output, expected_output)
295s AssertionError: b'\x00\x00\x00\x04V33 \x00\x00\x00\x04\x00\x00[1027 chars]x008' != b'\x04\x00\x00\x00V33 \x04\x00\x00\x00\x08\x00[1027 chars]\x00'
295s 
295s ======================================================================
295s FAIL: test_default (__main__.TestPCJSON.test_default)
295s ----------------------------------------------------------------------
295s Traceback (most recent call last):
295s   File "/tmp/autopkgtest.txi8R9/build.XhX/src/test/testobconv_writers.py", line 2761, in test_default
295s     self.assertWriters(self.fmt, """\
295s   File "/tmp/autopkgtest.txi8R9/build.XhX/src/test/testobconv_writers.py", line 258, in assertWriters
295s     test_write_string(self, mol, conv, expected_output, normalize)
295s   File "/tmp/autopkgtest.txi8R9/build.XhX/src/test/testobconv_writers.py", line 165, in test_write_string
295s     test_case.assertMultiLineEqual(output.replace("\r\n", "\n"), expected_output.replace("\r\n", "\n"))
295s AssertionError: '{\n [1926 chars]102014\n              ],\n              "y": [[1070 chars]]\n}' != '{\n [1926 chars]102012\n              ],\n              "y": [[1070 chars]]\n}'
295s   {
295s     "PC_Compounds": [
295s       {
295s         "atoms": {
295s           "aids": [
295s             1,
295s             2,
295s             3,
295s             4,
295s             5,
295s             6,
295s             7,
295s             8,
295s             9,
295s             10,
295s             11,
295s             12,
295s             13
295s           ],
295s           "element": [
295s             6,
295s             6,
295s             6,
295s             6,
295s             6,
295s             6,
295s             8,
295s             1,
295s             1,
295s             1,
295s             1,
295s             1,
295s             1
295s           ]
295s         },
295s         "bonds": {
295s           "aid1": [
295s             1,
295s             1,
295s             2,
295s             3,
295s             4,
295s             5,
295s             6,
295s             1,
295s             2,
295s             3,
295s             4,
295s             5,
295s             7
295s           ],
295s           "aid2": [
295s             6,
295s             2,
295s             3,
295s             4,
295s             5,
295s             6,
295s             7,
295s             8,
295s             9,
295s             10,
295s             11,
295s             12,
295s             13
295s           ],
295s           "order": [
295s             2,
295s             1,
295s             2,
295s             1,
295s             2,
295s             1,
295s             1,
295s             1,
295s             1,
295s             1,
295s             1,
295s             1,
295s             1
295s           ]
295s         },
295s         "coords": [
295s           {
295s             "type": [
295s               1
295s             ],
295s             "aids": [
295s               1,
295s               2,
295s               3,
295s               4,
295s               5,
295s               6,
295s               7,
295s               8,
295s               9,
295s               10,
295s               11,
295s               12,
295s               13
295s             ],
295s             "conformers": [
295s               {
295s                 "x": [
295s                   1.5846,
295s                   1.5703,
295s                   2.4295,
295s                   3.3031,
295s                   3.3175,
295s                   0.0,
295s                   -1.0005,
295s                   2.313816216007316,
295s                   0.669250157347277,
295s                   2.4146659588503769,
295s                   4.189331679349326,
295s                   4.052466878708012,
295s -                 -1.4648575597102014
295s ?                                   ^
295s +                 -1.4648575597102012
295s ?                                   ^
295s                 ],
295s                 "y": [
295s                   1.5846,
295s                   1.5703,
295s                   2.4295,
295s                   3.3031,
295s                   3.3175,
295s                   0.0,
295s                   -1.0005,
295s                   2.313816216007316,
295s                   0.669250157347277,
295s                   2.4146659588503769,
295s                   4.189331679349326,
295s                   4.052466878708012,
295s -                 -1.4648575597102014
295s ?                                   ^
295s +                 -1.4648575597102012
295s ?                                   ^
295s                 ],
295s                 "style": {
295s                   "annotation": [
295s                     8,
295s                     8,
295s                     8,
295s                     8,
295s                     8,
295s                     8
295s                   ],
295s                   "aid1": [
295s                     1,
295s                     1,
295s                     2,
295s                     3,
295s                     4,
295s                     5
295s                   ],
295s                   "aid2": [
295s                     6,
295s                     2,
295s                     3,
295s                     4,
295s                     5,
295s                     6
295s                   ]
295s                 }
295s               }
295s             ]
295s           }
295s         ],
295s         "charge": 0
295s       }
295s     ]
295s   }
295s 
295s 
295s ----------------------------------------------------------------------
295s Ran 141 tests in 0.059s
295s 
295s FAILED (failures=2)
295s Ignoring test/testobconv_writers.py on s390x ...
295s Running test/testpcjsonformat.py ...
295s /tmp/autopkgtest.txi8R9/build.XhX/src/test/testpcjsonformat.py:1: SyntaxWarning: invalid escape sequence '\P'
295s   """Test PubChem JSON format using the OpenBabel Python bindings
296s .................
296s ----------------------------------------------------------------------
296s Ran 17 tests in 0.012s
296s 
296s OK
296s Running test/testpdbformat.py ...
296s /tmp/autopkgtest.txi8R9/build.XhX/src/test/testpdbformat.py:1: SyntaxWarning: invalid escape sequence '\P'
296s   """Test OpenBabel executables from Python
296s /usr/lib/python3.12/subprocess.py:1010: RuntimeWarning: line buffering (buffering=1) isn't supported in binary mode, the default buffer size will be used
296s   self.stdin = io.open(p2cwrite, 'wb', bufsize)
296s /usr/lib/python3.12/subprocess.py:1016: RuntimeWarning: line buffering (buffering=1) isn't supported in binary mode, the default buffer size will be used
296s   self.stdout = io.open(c2pread, 'rb', bufsize)
296s /usr/lib/python3.12/subprocess.py:1021: RuntimeWarning: line buffering (buffering=1) isn't supported in binary mode, the default buffer size will be used
296s   self.stderr = io.open(errread, 'rb', bufsize)
296s .
296s ----------------------------------------------------------------------
296s Ran 1 test in 0.012s
296s 
296s OK
296s Skipping test/testroundtrip.py ...
296s Running test/testsmartssym.py ...
296s /tmp/autopkgtest.txi8R9/build.XhX/src/test/testsmartssym.py:1: SyntaxWarning: invalid escape sequence '\P'
296s   """Test OpenBabel executables from Python
296s /usr/lib/python3.12/subprocess.py:1010: RuntimeWarning: line buffering (buffering=1) isn't supported in binary mode, the default buffer size will be used
296s   self.stdin = io.open(p2cwrite, 'wb', bufsize)
296s /usr/lib/python3.12/subprocess.py:1016: RuntimeWarning: line buffering (buffering=1) isn't supported in binary mode, the default buffer size will be used
296s   self.stdout = io.open(c2pread, 'rb', bufsize)
296s /usr/lib/python3.12/subprocess.py:1021: RuntimeWarning: line buffering (buffering=1) isn't supported in binary mode, the default buffer size will be used
296s   self.stderr = io.open(errread, 'rb', bufsize)
296s ....
296s ----------------------------------------------------------------------
296s Ran 4 tests in 0.456s
296s 
296s OK
296s Skipping test/testsym.py ...
296s Running test/testunique.py ...
296s /tmp/autopkgtest.txi8R9/build.XhX/src/test/testunique.py:1: SyntaxWarning: invalid escape sequence '\P'
296s   """Test OpenBabel executables from Python
296s /tmp/autopkgtest.txi8R9/build.XhX/src/test/testunique.py:26: SyntaxWarning: invalid escape sequence '\F'
296s   self.smiles = """C	methane
296s /usr/lib/python3.12/subprocess.py:1010: RuntimeWarning: line buffering (buffering=1) isn't supported in binary mode, the default buffer size will be used
296s   self.stdin = io.open(p2cwrite, 'wb', bufsize)
296s /usr/lib/python3.12/subprocess.py:1016: RuntimeWarning: line buffering (buffering=1) isn't supported in binary mode, the default buffer size will be used
296s   self.stdout = io.open(c2pread, 'rb', bufsize)
296s /usr/lib/python3.12/subprocess.py:1021: RuntimeWarning: line buffering (buffering=1) isn't supported in binary mode, the default buffer size will be used
296s   self.stderr = io.open(errread, 'rb', bufsize)
296s .
296s ----------------------------------------------------------------------
296s Ran 1 test in 0.112s
296s 
296s OK
297s autopkgtest [11:03:33]: test python3: -----------------------]
297s autopkgtest [11:03:33]: test python3:  - - - - - - - - - - results - - - - - - - - - -
297s python3              PASS
298s autopkgtest [11:03:34]: @@@@@@@@@@@@@@@@@@@@ summary
298s python3              PASS
311s nova [W] Using flock in prodstack6-s390x
311s Creating nova instance adt-plucky-s390x-openbabel-20241113-105835-juju-7f2275-prod-proposed-migration-environment-20-960bd9f8-4c09-4c2b-9d15-3cee53352ae4 from image adt/ubuntu-plucky-s390x-server-20241113.img (UUID e740277e-1f72-40ae-bfbe-46030537c71c)...