0s autopkgtest [12:19:13]: starting date and time: 2025-02-19 12:19:13+0000 0s autopkgtest [12:19:13]: git checkout: 325255d2 Merge branch 'pin-any-arch' into 'ubuntu/production' 0s autopkgtest [12:19:13]: host juju-7f2275-prod-proposed-migration-environment-2; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.twnds88g/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:sphinx --apt-upgrade nipy --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=sphinx/8.1.3-5 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest-s390x --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-2@bos03-s390x-23.secgroup --name adt-plucky-s390x-nipy-20250219-121913-juju-7f2275-prod-proposed-migration-environment-2-1ad077ee-3b0c-49fd-bd7d-8af7ce84bf22 --image adt/ubuntu-plucky-s390x-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-2 --net-id=net_prod-proposed-migration-s390x -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,keyserver.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com,radosgw.ps5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/ 127s autopkgtest [12:21:20]: testbed dpkg architecture: s390x 128s autopkgtest [12:21:21]: testbed apt version: 2.9.30 128s autopkgtest [12:21:21]: @@@@@@@@@@@@@@@@@@@@ test bed setup 128s autopkgtest [12:21:21]: testbed release detected to be: None 129s autopkgtest [12:21:22]: updating testbed package index (apt update) 129s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease [110 kB] 130s Hit:2 http://ftpmaster.internal/ubuntu plucky InRelease 130s Hit:3 http://ftpmaster.internal/ubuntu plucky-updates InRelease 130s Hit:4 http://ftpmaster.internal/ubuntu plucky-security InRelease 130s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/universe Sources [750 kB] 130s Get:6 http://ftpmaster.internal/ubuntu plucky-proposed/main Sources [76.1 kB] 130s Get:7 http://ftpmaster.internal/ubuntu plucky-proposed/restricted Sources [3120 B] 130s Get:8 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse Sources [13.9 kB] 130s Get:9 http://ftpmaster.internal/ubuntu plucky-proposed/main s390x Packages [95.1 kB] 130s Get:10 http://ftpmaster.internal/ubuntu plucky-proposed/restricted s390x Packages [760 B] 130s Get:11 http://ftpmaster.internal/ubuntu plucky-proposed/universe s390x Packages [646 kB] 130s Get:12 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse s390x Packages [4900 B] 130s Fetched 1700 kB in 1s (1777 kB/s) 131s Reading package lists... 132s Reading package lists... 132s Building dependency tree... 132s Reading state information... 132s Calculating upgrade... 132s The following packages were automatically installed and are no longer required: 132s libnsl2 libpython3.12-minimal libpython3.12-stdlib libpython3.12t64 132s linux-headers-6.11.0-8 linux-headers-6.11.0-8-generic 132s linux-modules-6.11.0-8-generic linux-tools-6.11.0-8 132s linux-tools-6.11.0-8-generic 132s Use 'sudo apt autoremove' to remove them. 132s The following packages will be upgraded: 132s iproute2 liblsof0 libp11-kit0 lsof 132s 4 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 132s Need to get 1791 kB of archives. 132s After this operation, 17.4 kB of additional disk space will be used. 132s Get:1 http://ftpmaster.internal/ubuntu plucky/main s390x iproute2 s390x 6.13.0-1ubuntu1 [1174 kB] 133s Get:2 http://ftpmaster.internal/ubuntu plucky/main s390x libp11-kit0 s390x 0.25.5-2ubuntu3 [316 kB] 133s Get:3 http://ftpmaster.internal/ubuntu plucky/main s390x lsof s390x 4.99.4+dfsg-1 [243 kB] 133s Get:4 http://ftpmaster.internal/ubuntu plucky/main s390x liblsof0 s390x 4.99.4+dfsg-1 [58.5 kB] 133s Preconfiguring packages ... 133s Fetched 1791 kB in 1s (2845 kB/s) 133s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 81030 files and directories currently installed.) 133s Preparing to unpack .../iproute2_6.13.0-1ubuntu1_s390x.deb ... 133s Unpacking iproute2 (6.13.0-1ubuntu1) over (6.10.0-2ubuntu1) ... 134s Preparing to unpack .../libp11-kit0_0.25.5-2ubuntu3_s390x.deb ... 134s Unpacking libp11-kit0:s390x (0.25.5-2ubuntu3) over (0.25.5-2ubuntu2) ... 134s Preparing to unpack .../lsof_4.99.4+dfsg-1_s390x.deb ... 134s Unpacking lsof (4.99.4+dfsg-1) over (4.99.3+dfsg-2) ... 134s Preparing to unpack .../liblsof0_4.99.4+dfsg-1_s390x.deb ... 134s Unpacking liblsof0 (4.99.4+dfsg-1) over (4.99.3+dfsg-2) ... 134s Setting up liblsof0 (4.99.4+dfsg-1) ... 134s Setting up iproute2 (6.13.0-1ubuntu1) ... 134s Setting up libp11-kit0:s390x (0.25.5-2ubuntu3) ... 134s Setting up lsof (4.99.4+dfsg-1) ... 134s Processing triggers for man-db (2.13.0-1) ... 134s Processing triggers for libc-bin (2.40-4ubuntu1) ... 135s Reading package lists... 135s Building dependency tree... 135s Reading state information... 135s The following packages will be REMOVED: 135s libnsl2* libpython3.12-minimal* libpython3.12-stdlib* libpython3.12t64* 135s linux-headers-6.11.0-8* linux-headers-6.11.0-8-generic* 135s linux-modules-6.11.0-8-generic* linux-tools-6.11.0-8* 135s linux-tools-6.11.0-8-generic* 135s 0 upgraded, 0 newly installed, 9 to remove and 0 not upgraded. 135s After this operation, 167 MB disk space will be freed. 135s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 81031 files and directories currently installed.) 135s Removing linux-tools-6.11.0-8-generic (6.11.0-8.8) ... 135s Removing linux-tools-6.11.0-8 (6.11.0-8.8) ... 135s Removing libpython3.12t64:s390x (3.12.9-1) ... 135s Removing libpython3.12-stdlib:s390x (3.12.9-1) ... 135s Removing libnsl2:s390x (1.3.0-3build3) ... 135s Removing libpython3.12-minimal:s390x (3.12.9-1) ... 135s Removing linux-headers-6.11.0-8-generic (6.11.0-8.8) ... 135s Removing linux-headers-6.11.0-8 (6.11.0-8.8) ... 137s Removing linux-modules-6.11.0-8-generic (6.11.0-8.8) ... 137s Processing triggers for libc-bin (2.40-4ubuntu1) ... 137s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 55931 files and directories currently installed.) 137s Purging configuration files for libpython3.12-minimal:s390x (3.12.9-1) ... 137s Purging configuration files for linux-modules-6.11.0-8-generic (6.11.0-8.8) ... 137s autopkgtest [12:21:30]: upgrading testbed (apt dist-upgrade and autopurge) 137s Reading package lists... 137s Building dependency tree... 137s Reading state information... 138s Calculating upgrade...Starting pkgProblemResolver with broken count: 0 138s Starting 2 pkgProblemResolver with broken count: 0 138s Done 138s Entering ResolveByKeep 138s 139s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 139s Reading package lists... 139s Building dependency tree... 139s Reading state information... 139s Starting pkgProblemResolver with broken count: 0 139s Starting 2 pkgProblemResolver with broken count: 0 139s Done 140s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 140s autopkgtest [12:21:33]: rebooting testbed after setup commands that affected boot 160s autopkgtest [12:21:53]: testbed running kernel: Linux 6.12.0-15-generic #15-Ubuntu SMP Tue Feb 4 15:05:57 UTC 2025 162s autopkgtest [12:21:55]: @@@@@@@@@@@@@@@@@@@@ apt-source nipy 165s Get:1 http://ftpmaster.internal/ubuntu plucky/universe nipy 0.6.1-1build2 (dsc) [2509 B] 165s Get:2 http://ftpmaster.internal/ubuntu plucky/universe nipy 0.6.1-1build2 (tar) [1653 kB] 165s Get:3 http://ftpmaster.internal/ubuntu plucky/universe nipy 0.6.1-1build2 (diff) [12.5 kB] 166s gpgv: Signature made Wed Jan 29 22:33:34 2025 UTC 166s gpgv: using RSA key 25E3FF2D7F469DBE7D0D4E50AFCFEC8E669CE1C2 166s gpgv: Can't check signature: No public key 166s dpkg-source: warning: cannot verify inline signature for ./nipy_0.6.1-1build2.dsc: no acceptable signature found 166s autopkgtest [12:21:59]: testing package nipy version 0.6.1-1build2 166s autopkgtest [12:21:59]: build not needed 168s autopkgtest [12:22:01]: test command1: preparing testbed 168s Reading package lists... 168s Building dependency tree... 168s Reading state information... 168s Starting pkgProblemResolver with broken count: 0 168s Starting 2 pkgProblemResolver with broken count: 0 168s Done 168s The following NEW packages will be installed: 168s fonts-mathjax libblas3 libgfortran5 libjs-jquery libjs-mathjax 168s libjs-sphinxdoc libjs-underscore liblapack3 liblbfgsb0 python-nipy-doc 168s python3-decorator python3-iniconfig python3-mpmath python3-nibabel 168s python3-nipy python3-nipy-lib python3-numpy python3-packaging python3-pluggy 168s python3-pytest python3-scipy python3-sympy python3-transforms3d 169s 0 upgraded, 23 newly installed, 0 to remove and 0 not upgraded. 169s Need to get 50.8 MB of archives. 169s After this operation, 265 MB of additional disk space will be used. 169s Get:1 http://ftpmaster.internal/ubuntu plucky/main s390x fonts-mathjax all 2.7.9+dfsg-1 [2208 kB] 169s Get:2 http://ftpmaster.internal/ubuntu plucky/main s390x libblas3 s390x 3.12.1-2 [252 kB] 169s Get:3 http://ftpmaster.internal/ubuntu plucky/main s390x libgfortran5 s390x 15-20250213-1ubuntu1 [620 kB] 169s Get:4 http://ftpmaster.internal/ubuntu plucky/main s390x libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [328 kB] 169s Get:5 http://ftpmaster.internal/ubuntu plucky/main s390x libjs-underscore all 1.13.4~dfsg+~1.11.4-3 [118 kB] 169s Get:6 http://ftpmaster.internal/ubuntu plucky-proposed/main s390x libjs-sphinxdoc all 8.1.3-5 [31.0 kB] 169s Get:7 http://ftpmaster.internal/ubuntu plucky/main s390x liblapack3 s390x 3.12.1-2 [2971 kB] 169s Get:8 http://ftpmaster.internal/ubuntu plucky/universe s390x liblbfgsb0 s390x 3.0+dfsg.4-1build1 [32.4 kB] 169s Get:9 http://ftpmaster.internal/ubuntu plucky/main s390x python3-decorator all 5.1.1-5 [10.1 kB] 169s Get:10 http://ftpmaster.internal/ubuntu plucky/universe s390x python3-iniconfig all 1.1.1-2 [6024 B] 169s Get:11 http://ftpmaster.internal/ubuntu plucky/universe s390x python3-mpmath all 1.3.0-1 [425 kB] 169s Get:12 http://ftpmaster.internal/ubuntu plucky/main s390x python3-numpy s390x 1:1.26.4+ds-13 [4601 kB] 170s Get:13 http://ftpmaster.internal/ubuntu plucky/main s390x python3-packaging all 24.2-1 [51.5 kB] 170s Get:14 http://ftpmaster.internal/ubuntu plucky/universe s390x python3-scipy s390x 1.14.1-4ubuntu1 [21.2 MB] 170s Get:15 http://ftpmaster.internal/ubuntu plucky/universe s390x python3-nibabel all 5.3.2-2 [2701 kB] 170s Get:16 http://ftpmaster.internal/ubuntu plucky/universe s390x python3-sympy all 1.13.3-1 [4228 kB] 171s Get:17 http://ftpmaster.internal/ubuntu plucky/universe s390x python3-transforms3d all 0.4.2+ds-1 [1359 kB] 171s Get:18 http://ftpmaster.internal/ubuntu plucky/universe s390x python3-nipy-lib s390x 0.6.1-1build2 [1074 kB] 171s Get:19 http://ftpmaster.internal/ubuntu plucky/universe s390x python3-nipy all 0.6.1-1build2 [727 kB] 171s Get:20 http://ftpmaster.internal/ubuntu plucky/universe s390x python3-pluggy all 1.5.0-1 [21.0 kB] 171s Get:21 http://ftpmaster.internal/ubuntu plucky/universe s390x python3-pytest all 8.3.4-1 [252 kB] 171s Get:22 http://ftpmaster.internal/ubuntu plucky/main s390x libjs-mathjax all 2.7.9+dfsg-1 [5665 kB] 171s Get:23 http://ftpmaster.internal/ubuntu plucky/universe s390x python-nipy-doc all 0.6.1-1build2 [1970 kB] 171s Fetched 50.8 MB in 3s (19.5 MB/s) 171s Selecting previously unselected package fonts-mathjax. 171s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 55929 files and directories currently installed.) 171s Preparing to unpack .../00-fonts-mathjax_2.7.9+dfsg-1_all.deb ... 171s Unpacking fonts-mathjax (2.7.9+dfsg-1) ... 172s Selecting previously unselected package libblas3:s390x. 172s Preparing to unpack .../01-libblas3_3.12.1-2_s390x.deb ... 172s Unpacking libblas3:s390x (3.12.1-2) ... 172s Selecting previously unselected package libgfortran5:s390x. 172s Preparing to unpack .../02-libgfortran5_15-20250213-1ubuntu1_s390x.deb ... 172s Unpacking libgfortran5:s390x (15-20250213-1ubuntu1) ... 172s Selecting previously unselected package libjs-jquery. 172s Preparing to unpack .../03-libjs-jquery_3.6.1+dfsg+~3.5.14-1_all.deb ... 172s Unpacking libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... 172s Selecting previously unselected package libjs-underscore. 172s Preparing to unpack .../04-libjs-underscore_1.13.4~dfsg+~1.11.4-3_all.deb ... 172s Unpacking libjs-underscore (1.13.4~dfsg+~1.11.4-3) ... 172s Selecting previously unselected package libjs-sphinxdoc. 172s Preparing to unpack .../05-libjs-sphinxdoc_8.1.3-5_all.deb ... 172s Unpacking libjs-sphinxdoc (8.1.3-5) ... 172s Selecting previously unselected package liblapack3:s390x. 172s Preparing to unpack .../06-liblapack3_3.12.1-2_s390x.deb ... 172s Unpacking liblapack3:s390x (3.12.1-2) ... 172s Selecting previously unselected package liblbfgsb0:s390x. 172s Preparing to unpack .../07-liblbfgsb0_3.0+dfsg.4-1build1_s390x.deb ... 172s Unpacking liblbfgsb0:s390x (3.0+dfsg.4-1build1) ... 172s Selecting previously unselected package python3-decorator. 172s Preparing to unpack .../08-python3-decorator_5.1.1-5_all.deb ... 172s Unpacking python3-decorator (5.1.1-5) ... 172s Selecting previously unselected package python3-iniconfig. 172s Preparing to unpack .../09-python3-iniconfig_1.1.1-2_all.deb ... 172s Unpacking python3-iniconfig (1.1.1-2) ... 172s Selecting previously unselected package python3-mpmath. 172s Preparing to unpack .../10-python3-mpmath_1.3.0-1_all.deb ... 172s Unpacking python3-mpmath (1.3.0-1) ... 172s Selecting previously unselected package python3-numpy. 172s Preparing to unpack .../11-python3-numpy_1%3a1.26.4+ds-13_s390x.deb ... 172s Unpacking python3-numpy (1:1.26.4+ds-13) ... 172s Selecting previously unselected package python3-packaging. 172s Preparing to unpack .../12-python3-packaging_24.2-1_all.deb ... 172s Unpacking python3-packaging (24.2-1) ... 172s Selecting previously unselected package python3-scipy. 172s Preparing to unpack .../13-python3-scipy_1.14.1-4ubuntu1_s390x.deb ... 172s Unpacking python3-scipy (1.14.1-4ubuntu1) ... 173s Selecting previously unselected package python3-nibabel. 173s Preparing to unpack .../14-python3-nibabel_5.3.2-2_all.deb ... 173s Unpacking python3-nibabel (5.3.2-2) ... 173s Selecting previously unselected package python3-sympy. 173s Preparing to unpack .../15-python3-sympy_1.13.3-1_all.deb ... 173s Unpacking python3-sympy (1.13.3-1) ... 173s Selecting previously unselected package python3-transforms3d. 173s Preparing to unpack .../16-python3-transforms3d_0.4.2+ds-1_all.deb ... 173s Unpacking python3-transforms3d (0.4.2+ds-1) ... 173s Selecting previously unselected package python3-nipy-lib:s390x. 173s Preparing to unpack .../17-python3-nipy-lib_0.6.1-1build2_s390x.deb ... 173s Unpacking python3-nipy-lib:s390x (0.6.1-1build2) ... 173s Selecting previously unselected package python3-nipy. 173s Preparing to unpack .../18-python3-nipy_0.6.1-1build2_all.deb ... 173s Unpacking python3-nipy (0.6.1-1build2) ... 173s Selecting previously unselected package python3-pluggy. 173s Preparing to unpack .../19-python3-pluggy_1.5.0-1_all.deb ... 173s Unpacking python3-pluggy (1.5.0-1) ... 173s Selecting previously unselected package python3-pytest. 173s Preparing to unpack .../20-python3-pytest_8.3.4-1_all.deb ... 173s Unpacking python3-pytest (8.3.4-1) ... 173s Selecting previously unselected package libjs-mathjax. 173s Preparing to unpack .../21-libjs-mathjax_2.7.9+dfsg-1_all.deb ... 173s Unpacking libjs-mathjax (2.7.9+dfsg-1) ... 173s Selecting previously unselected package python-nipy-doc. 173s Preparing to unpack .../22-python-nipy-doc_0.6.1-1build2_all.deb ... 173s Unpacking python-nipy-doc (0.6.1-1build2) ... 174s Setting up python3-iniconfig (1.1.1-2) ... 174s Setting up fonts-mathjax (2.7.9+dfsg-1) ... 174s Setting up libjs-mathjax (2.7.9+dfsg-1) ... 174s Setting up python3-decorator (5.1.1-5) ... 174s Setting up libblas3:s390x (3.12.1-2) ... 174s update-alternatives: using /usr/lib/s390x-linux-gnu/blas/libblas.so.3 to provide /usr/lib/s390x-linux-gnu/libblas.so.3 (libblas.so.3-s390x-linux-gnu) in auto mode 174s Setting up python3-packaging (24.2-1) ... 174s Setting up libgfortran5:s390x (15-20250213-1ubuntu1) ... 174s Setting up python3-pluggy (1.5.0-1) ... 174s Setting up libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... 174s Setting up python3-mpmath (1.3.0-1) ... 174s Setting up libjs-underscore (1.13.4~dfsg+~1.11.4-3) ... 174s Setting up python3-sympy (1.13.3-1) ... 180s Setting up liblapack3:s390x (3.12.1-2) ... 180s update-alternatives: using /usr/lib/s390x-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/s390x-linux-gnu/liblapack.so.3 (liblapack.so.3-s390x-linux-gnu) in auto mode 180s Setting up python3-pytest (8.3.4-1) ... 180s Setting up python3-numpy (1:1.26.4+ds-13) ... 182s Setting up libjs-sphinxdoc (8.1.3-5) ... 182s Setting up liblbfgsb0:s390x (3.0+dfsg.4-1build1) ... 182s Setting up python3-transforms3d (0.4.2+ds-1) ... 183s Setting up python3-scipy (1.14.1-4ubuntu1) ... 186s Setting up python-nipy-doc (0.6.1-1build2) ... 186s Setting up python3-nibabel (5.3.2-2) ... 187s Setting up python3-nipy-lib:s390x (0.6.1-1build2) ... 187s Setting up python3-nipy (0.6.1-1build2) ... 187s Processing triggers for man-db (2.13.0-1) ... 188s Processing triggers for libc-bin (2.40-4ubuntu1) ... 189s autopkgtest [12:22:22]: test command1: cd debian/tests && python3 -m pytest nipy_test.py 189s autopkgtest [12:22:22]: test command1: [----------------------- 189s ============================= test session starts ============================== 189s platform linux -- Python 3.13.2, pytest-8.3.4, pluggy-1.5.0 189s rootdir: /tmp/autopkgtest.XMG3g4/build.BB3/src 189s configfile: pyproject.toml 189s plugins: typeguard-4.4.1 189s collected 4 items 189s 189s nipy_test.py .... [100%] 189s 189s =============================== warnings summary =============================== 189s debian/tests/nipy_test.py::test_image_save_to_file 189s /usr/lib/python3/dist-packages/nipy/io/files.py:141: FutureWarning: Default `strict` currently False; this will change to True in a future version of nipy 189s ni_img = nipy2nifti(img, data_dtype = io_dtype) 189s 189s -- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html 189s ========================= 4 passed, 1 warning in 0.12s ========================= 190s autopkgtest [12:22:23]: test command1: -----------------------] 190s command1 PASS 190s autopkgtest [12:22:23]: test command1: - - - - - - - - - - results - - - - - - - - - - 191s autopkgtest [12:22:24]: test autodep8-python3: preparing testbed 323s autopkgtest [12:24:36]: testbed dpkg architecture: s390x 323s autopkgtest [12:24:36]: testbed apt version: 2.9.30 324s autopkgtest [12:24:37]: @@@@@@@@@@@@@@@@@@@@ test bed setup 324s autopkgtest [12:24:37]: testbed release detected to be: plucky 324s autopkgtest [12:24:37]: updating testbed package index (apt update) 325s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease [110 kB] 325s Hit:2 http://ftpmaster.internal/ubuntu plucky InRelease 325s Hit:3 http://ftpmaster.internal/ubuntu plucky-updates InRelease 325s Hit:4 http://ftpmaster.internal/ubuntu plucky-security InRelease 325s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/main Sources [76.1 kB] 325s Get:6 http://ftpmaster.internal/ubuntu plucky-proposed/universe Sources [750 kB] 325s Get:7 http://ftpmaster.internal/ubuntu plucky-proposed/restricted Sources [3120 B] 325s Get:8 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse Sources [13.9 kB] 325s Get:9 http://ftpmaster.internal/ubuntu plucky-proposed/main s390x Packages [95.1 kB] 325s Get:10 http://ftpmaster.internal/ubuntu plucky-proposed/restricted s390x Packages [760 B] 325s Get:11 http://ftpmaster.internal/ubuntu plucky-proposed/universe s390x Packages [646 kB] 326s Get:12 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse s390x Packages [4900 B] 326s Fetched 1700 kB in 1s (1740 kB/s) 326s Reading package lists... 327s Reading package lists... 327s Building dependency tree... 327s Reading state information... 327s Calculating upgrade... 327s The following packages were automatically installed and are no longer required: 327s libnsl2 libpython3.12-minimal libpython3.12-stdlib libpython3.12t64 327s linux-headers-6.11.0-8 linux-headers-6.11.0-8-generic 327s linux-modules-6.11.0-8-generic linux-tools-6.11.0-8 327s linux-tools-6.11.0-8-generic 327s Use 'sudo apt autoremove' to remove them. 327s The following packages will be upgraded: 327s iproute2 liblsof0 libp11-kit0 lsof 327s 4 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 327s Need to get 1791 kB of archives. 327s After this operation, 17.4 kB of additional disk space will be used. 327s Get:1 http://ftpmaster.internal/ubuntu plucky/main s390x iproute2 s390x 6.13.0-1ubuntu1 [1174 kB] 328s Get:2 http://ftpmaster.internal/ubuntu plucky/main s390x libp11-kit0 s390x 0.25.5-2ubuntu3 [316 kB] 328s Get:3 http://ftpmaster.internal/ubuntu plucky/main s390x lsof s390x 4.99.4+dfsg-1 [243 kB] 328s Get:4 http://ftpmaster.internal/ubuntu plucky/main s390x liblsof0 s390x 4.99.4+dfsg-1 [58.5 kB] 328s Preconfiguring packages ... 328s Fetched 1791 kB in 1s (2754 kB/s) 328s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 81030 files and directories currently installed.) 328s Preparing to unpack .../iproute2_6.13.0-1ubuntu1_s390x.deb ... 328s Unpacking iproute2 (6.13.0-1ubuntu1) over (6.10.0-2ubuntu1) ... 328s Preparing to unpack .../libp11-kit0_0.25.5-2ubuntu3_s390x.deb ... 328s Unpacking libp11-kit0:s390x (0.25.5-2ubuntu3) over (0.25.5-2ubuntu2) ... 328s Preparing to unpack .../lsof_4.99.4+dfsg-1_s390x.deb ... 328s Unpacking lsof (4.99.4+dfsg-1) over (4.99.3+dfsg-2) ... 328s Preparing to unpack .../liblsof0_4.99.4+dfsg-1_s390x.deb ... 328s Unpacking liblsof0 (4.99.4+dfsg-1) over (4.99.3+dfsg-2) ... 328s Setting up liblsof0 (4.99.4+dfsg-1) ... 328s Setting up iproute2 (6.13.0-1ubuntu1) ... 329s Setting up libp11-kit0:s390x (0.25.5-2ubuntu3) ... 329s Setting up lsof (4.99.4+dfsg-1) ... 329s Processing triggers for man-db (2.13.0-1) ... 329s Processing triggers for libc-bin (2.40-4ubuntu1) ... 329s Reading package lists... 329s Building dependency tree... 329s Reading state information... 329s The following packages will be REMOVED: 329s libnsl2* libpython3.12-minimal* libpython3.12-stdlib* libpython3.12t64* 329s linux-headers-6.11.0-8* linux-headers-6.11.0-8-generic* 329s linux-modules-6.11.0-8-generic* linux-tools-6.11.0-8* 329s linux-tools-6.11.0-8-generic* 330s 0 upgraded, 0 newly installed, 9 to remove and 0 not upgraded. 330s After this operation, 167 MB disk space will be freed. 330s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 81031 files and directories currently installed.) 330s Removing linux-tools-6.11.0-8-generic (6.11.0-8.8) ... 330s Removing linux-tools-6.11.0-8 (6.11.0-8.8) ... 330s Removing libpython3.12t64:s390x (3.12.9-1) ... 330s Removing libpython3.12-stdlib:s390x (3.12.9-1) ... 330s Removing libnsl2:s390x (1.3.0-3build3) ... 330s Removing libpython3.12-minimal:s390x (3.12.9-1) ... 330s Removing linux-headers-6.11.0-8-generic (6.11.0-8.8) ... 330s Removing linux-headers-6.11.0-8 (6.11.0-8.8) ... 331s Removing linux-modules-6.11.0-8-generic (6.11.0-8.8) ... 331s Processing triggers for libc-bin (2.40-4ubuntu1) ... 331s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 55931 files and directories currently installed.) 331s Purging configuration files for libpython3.12-minimal:s390x (3.12.9-1) ... 331s Purging configuration files for linux-modules-6.11.0-8-generic (6.11.0-8.8) ... 331s autopkgtest [12:24:44]: upgrading testbed (apt dist-upgrade and autopurge) 331s Reading package lists... 331s Building dependency tree... 331s Reading state information... 332s Calculating upgrade...Starting pkgProblemResolver with broken count: 0 332s Starting 2 pkgProblemResolver with broken count: 0 332s Done 332s Entering ResolveByKeep 332s 332s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 332s Reading package lists... 332s Building dependency tree... 332s Reading state information... 332s Starting pkgProblemResolver with broken count: 0 332s Starting 2 pkgProblemResolver with broken count: 0 332s Done 333s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 333s autopkgtest [12:24:46]: rebooting testbed after setup commands that affected boot 355s Reading package lists... 355s Building dependency tree... 355s Reading state information... 356s Starting pkgProblemResolver with broken count: 0 356s Starting 2 pkgProblemResolver with broken count: 0 356s Done 356s The following NEW packages will be installed: 356s libblas3 libgfortran5 liblapack3 liblbfgsb0 libnsl2 libpython3.12-minimal 356s libpython3.12-stdlib python3-all python3-decorator python3-mpmath 356s python3-nibabel python3-nipy python3-nipy-lib python3-numpy 356s python3-packaging python3-scipy python3-sympy python3-transforms3d 356s python3.12 python3.12-minimal 356s 0 upgraded, 20 newly installed, 0 to remove and 0 not upgraded. 356s Need to get 46.2 MB of archives. 356s After this operation, 227 MB of additional disk space will be used. 356s Get:1 http://ftpmaster.internal/ubuntu plucky/main s390x libpython3.12-minimal s390x 3.12.9-1 [836 kB] 356s Get:2 http://ftpmaster.internal/ubuntu plucky/main s390x python3.12-minimal s390x 3.12.9-1 [2403 kB] 357s Get:3 http://ftpmaster.internal/ubuntu plucky/main s390x libnsl2 s390x 1.3.0-3build3 [44.1 kB] 357s Get:4 http://ftpmaster.internal/ubuntu plucky/main s390x libpython3.12-stdlib s390x 3.12.9-1 [2071 kB] 357s Get:5 http://ftpmaster.internal/ubuntu plucky/main s390x python3.12 s390x 3.12.9-1 [671 kB] 357s Get:6 http://ftpmaster.internal/ubuntu plucky/main s390x libblas3 s390x 3.12.1-2 [252 kB] 357s Get:7 http://ftpmaster.internal/ubuntu plucky/main s390x libgfortran5 s390x 15-20250213-1ubuntu1 [620 kB] 357s Get:8 http://ftpmaster.internal/ubuntu plucky/main s390x liblapack3 s390x 3.12.1-2 [2971 kB] 357s Get:9 http://ftpmaster.internal/ubuntu plucky/universe s390x liblbfgsb0 s390x 3.0+dfsg.4-1build1 [32.4 kB] 357s Get:10 http://ftpmaster.internal/ubuntu plucky/main s390x python3-all s390x 3.13.1-1~exp2 [898 B] 357s Get:11 http://ftpmaster.internal/ubuntu plucky/main s390x python3-decorator all 5.1.1-5 [10.1 kB] 357s Get:12 http://ftpmaster.internal/ubuntu plucky/universe s390x python3-mpmath all 1.3.0-1 [425 kB] 357s Get:13 http://ftpmaster.internal/ubuntu plucky/main s390x python3-numpy s390x 1:1.26.4+ds-13 [4601 kB] 357s Get:14 http://ftpmaster.internal/ubuntu plucky/main s390x python3-packaging all 24.2-1 [51.5 kB] 357s Get:15 http://ftpmaster.internal/ubuntu plucky/universe s390x python3-scipy s390x 1.14.1-4ubuntu1 [21.2 MB] 358s Get:16 http://ftpmaster.internal/ubuntu plucky/universe s390x python3-nibabel all 5.3.2-2 [2701 kB] 358s Get:17 http://ftpmaster.internal/ubuntu plucky/universe s390x python3-sympy all 1.13.3-1 [4228 kB] 358s Get:18 http://ftpmaster.internal/ubuntu plucky/universe s390x python3-transforms3d all 0.4.2+ds-1 [1359 kB] 358s Get:19 http://ftpmaster.internal/ubuntu plucky/universe s390x python3-nipy-lib s390x 0.6.1-1build2 [1074 kB] 358s Get:20 http://ftpmaster.internal/ubuntu plucky/universe s390x python3-nipy all 0.6.1-1build2 [727 kB] 358s Fetched 46.2 MB in 2s (19.7 MB/s) 358s Selecting previously unselected package libpython3.12-minimal:s390x. 359s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 55929 files and directories currently installed.) 359s Preparing to unpack .../00-libpython3.12-minimal_3.12.9-1_s390x.deb ... 359s Unpacking libpython3.12-minimal:s390x (3.12.9-1) ... 359s Selecting previously unselected package python3.12-minimal. 359s Preparing to unpack .../01-python3.12-minimal_3.12.9-1_s390x.deb ... 359s Unpacking python3.12-minimal (3.12.9-1) ... 359s Selecting previously unselected package libnsl2:s390x. 359s Preparing to unpack .../02-libnsl2_1.3.0-3build3_s390x.deb ... 359s Unpacking libnsl2:s390x (1.3.0-3build3) ... 359s Selecting previously unselected package libpython3.12-stdlib:s390x. 359s Preparing to unpack .../03-libpython3.12-stdlib_3.12.9-1_s390x.deb ... 359s Unpacking libpython3.12-stdlib:s390x (3.12.9-1) ... 359s Selecting previously unselected package python3.12. 359s Preparing to unpack .../04-python3.12_3.12.9-1_s390x.deb ... 359s Unpacking python3.12 (3.12.9-1) ... 359s Selecting previously unselected package libblas3:s390x. 359s Preparing to unpack .../05-libblas3_3.12.1-2_s390x.deb ... 359s Unpacking libblas3:s390x (3.12.1-2) ... 359s Selecting previously unselected package libgfortran5:s390x. 359s Preparing to unpack .../06-libgfortran5_15-20250213-1ubuntu1_s390x.deb ... 359s Unpacking libgfortran5:s390x (15-20250213-1ubuntu1) ... 359s Selecting previously unselected package liblapack3:s390x. 359s Preparing to unpack .../07-liblapack3_3.12.1-2_s390x.deb ... 359s Unpacking liblapack3:s390x (3.12.1-2) ... 359s Selecting previously unselected package liblbfgsb0:s390x. 359s Preparing to unpack .../08-liblbfgsb0_3.0+dfsg.4-1build1_s390x.deb ... 359s Unpacking liblbfgsb0:s390x (3.0+dfsg.4-1build1) ... 359s Selecting previously unselected package python3-all. 359s Preparing to unpack .../09-python3-all_3.13.1-1~exp2_s390x.deb ... 359s Unpacking python3-all (3.13.1-1~exp2) ... 359s Selecting previously unselected package python3-decorator. 359s Preparing to unpack .../10-python3-decorator_5.1.1-5_all.deb ... 359s Unpacking python3-decorator (5.1.1-5) ... 359s Selecting previously unselected package python3-mpmath. 359s Preparing to unpack .../11-python3-mpmath_1.3.0-1_all.deb ... 359s Unpacking python3-mpmath (1.3.0-1) ... 359s Selecting previously unselected package python3-numpy. 359s Preparing to unpack .../12-python3-numpy_1%3a1.26.4+ds-13_s390x.deb ... 359s Unpacking python3-numpy (1:1.26.4+ds-13) ... 359s Selecting previously unselected package python3-packaging. 359s Preparing to unpack .../13-python3-packaging_24.2-1_all.deb ... 359s Unpacking python3-packaging (24.2-1) ... 359s Selecting previously unselected package python3-scipy. 359s Preparing to unpack .../14-python3-scipy_1.14.1-4ubuntu1_s390x.deb ... 359s Unpacking python3-scipy (1.14.1-4ubuntu1) ... 359s Selecting previously unselected package python3-nibabel. 359s Preparing to unpack .../15-python3-nibabel_5.3.2-2_all.deb ... 359s Unpacking python3-nibabel (5.3.2-2) ... 359s Selecting previously unselected package python3-sympy. 359s Preparing to unpack .../16-python3-sympy_1.13.3-1_all.deb ... 359s Unpacking python3-sympy (1.13.3-1) ... 360s Selecting previously unselected package python3-transforms3d. 360s Preparing to unpack .../17-python3-transforms3d_0.4.2+ds-1_all.deb ... 360s Unpacking python3-transforms3d (0.4.2+ds-1) ... 360s Selecting previously unselected package python3-nipy-lib:s390x. 360s Preparing to unpack .../18-python3-nipy-lib_0.6.1-1build2_s390x.deb ... 360s Unpacking python3-nipy-lib:s390x (0.6.1-1build2) ... 360s Selecting previously unselected package python3-nipy. 360s Preparing to unpack .../19-python3-nipy_0.6.1-1build2_all.deb ... 360s Unpacking python3-nipy (0.6.1-1build2) ... 360s Setting up libpython3.12-minimal:s390x (3.12.9-1) ... 360s Setting up python3-decorator (5.1.1-5) ... 360s Setting up libblas3:s390x (3.12.1-2) ... 360s update-alternatives: using /usr/lib/s390x-linux-gnu/blas/libblas.so.3 to provide /usr/lib/s390x-linux-gnu/libblas.so.3 (libblas.so.3-s390x-linux-gnu) in auto mode 360s Setting up python3-packaging (24.2-1) ... 360s Setting up libgfortran5:s390x (15-20250213-1ubuntu1) ... 360s Setting up libnsl2:s390x (1.3.0-3build3) ... 360s Setting up python3-mpmath (1.3.0-1) ... 361s Setting up python3-sympy (1.13.3-1) ... 372s Setting up python3.12-minimal (3.12.9-1) ... 373s Setting up liblapack3:s390x (3.12.1-2) ... 373s update-alternatives: using /usr/lib/s390x-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/s390x-linux-gnu/liblapack.so.3 (liblapack.so.3-s390x-linux-gnu) in auto mode 373s Setting up libpython3.12-stdlib:s390x (3.12.9-1) ... 373s Setting up python3.12 (3.12.9-1) ... 374s Setting up python3-all (3.13.1-1~exp2) ... 374s Setting up python3-numpy (1:1.26.4+ds-13) ... 377s Setting up liblbfgsb0:s390x (3.0+dfsg.4-1build1) ... 377s Setting up python3-transforms3d (0.4.2+ds-1) ... 378s Setting up python3-scipy (1.14.1-4ubuntu1) ... 384s Setting up python3-nibabel (5.3.2-2) ... 385s Setting up python3-nipy-lib:s390x (0.6.1-1build2) ... 385s Setting up python3-nipy (0.6.1-1build2) ... 386s Processing triggers for systemd (257.2-3ubuntu1) ... 386s Processing triggers for man-db (2.13.0-1) ... 386s Processing triggers for libc-bin (2.40-4ubuntu1) ... 390s autopkgtest [12:25:43]: test autodep8-python3: set -e ; for py in $(py3versions -r 2>/dev/null) ; do cd "$AUTOPKGTEST_TMP" ; echo "Testing with $py:" ; $py -c "import nipy; print(nipy)" ; done 390s autopkgtest [12:25:43]: test autodep8-python3: [----------------------- 390s Testing with python3.12: 390s 390s Testing with python3.13: 391s 391s autopkgtest [12:25:44]: test autodep8-python3: -----------------------] 391s autopkgtest [12:25:44]: test autodep8-python3: - - - - - - - - - - results - - - - - - - - - - 391s autodep8-python3 PASS (superficial) 392s autopkgtest [12:25:45]: @@@@@@@@@@@@@@@@@@@@ summary 392s command1 PASS 392s autodep8-python3 PASS (superficial) 398s nova [W] Using flock in prodstack6-s390x 398s Creating nova instance adt-plucky-s390x-nipy-20250219-121913-juju-7f2275-prod-proposed-migration-environment-2-1ad077ee-3b0c-49fd-bd7d-8af7ce84bf22 from image adt/ubuntu-plucky-s390x-server-20250219.img (UUID 7af5aa59-4155-4177-a560-02c7dd963d23)... 398s nova [W] Timed out waiting for ee7c62cc-dc85-453f-bb01-25a133fc7719 to get deleted. 398s nova [W] Using flock in prodstack6-s390x 398s flock: timeout while waiting to get lock 398s Creating nova instance adt-plucky-s390x-nipy-20250219-121913-juju-7f2275-prod-proposed-migration-environment-2-1ad077ee-3b0c-49fd-bd7d-8af7ce84bf22 from image adt/ubuntu-plucky-s390x-server-20250219.img (UUID 7af5aa59-4155-4177-a560-02c7dd963d23)... 398s nova [W] Timed out waiting for 5582be25-2ff5-4951-975c-64bec2a993eb to get deleted.