0s autopkgtest [12:03:46]: starting date and time: 2024-11-13 12:03:46+0000 0s autopkgtest [12:03:46]: git checkout: 0acbae0a WIP show VirtSubproc stderr in real-time 0s autopkgtest [12:03:46]: host juju-7f2275-prod-proposed-migration-environment-2; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.62lug6_7/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:python3-defaults,src:python3-stdlib-extensions --apt-upgrade nipy --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 '--env=ADT_TEST_TRIGGERS=python3-defaults/3.12.7-1 python3-stdlib-extensions/3.12.7-1' -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest-s390x --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-2@bos03-s390x-18.secgroup --name adt-plucky-s390x-nipy-20241113-120345-juju-7f2275-prod-proposed-migration-environment-2-f2dd24c2-8361-4787-b691-224b19b71f71 --image adt/ubuntu-plucky-s390x-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-2 --net-id=net_prod-proposed-migration-s390x -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,keyserver.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/ 113s autopkgtest [12:05:39]: testbed dpkg architecture: s390x 113s autopkgtest [12:05:39]: testbed apt version: 2.9.8 113s autopkgtest [12:05:39]: @@@@@@@@@@@@@@@@@@@@ test bed setup 114s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease [73.9 kB] 115s Get:2 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse Sources [15.3 kB] 115s Get:3 http://ftpmaster.internal/ubuntu plucky-proposed/main Sources [76.4 kB] 115s Get:4 http://ftpmaster.internal/ubuntu plucky-proposed/universe Sources [849 kB] 115s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/restricted Sources [7016 B] 115s Get:6 http://ftpmaster.internal/ubuntu plucky-proposed/main s390x Packages [85.8 kB] 115s Get:7 http://ftpmaster.internal/ubuntu plucky-proposed/universe s390x Packages [565 kB] 116s Get:8 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse s390x Packages [16.6 kB] 116s Fetched 1689 kB in 2s (1089 kB/s) 116s Reading package lists... 118s Reading package lists... 118s Building dependency tree... 118s Reading state information... 118s Calculating upgrade... 118s The following NEW packages will be installed: 118s python3.13-gdbm 118s The following packages will be upgraded: 118s libgpgme11t64 libpython3-stdlib python3 python3-gdbm python3-minimal 118s 5 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. 118s Need to get 252 kB of archives. 118s After this operation, 98.3 kB of additional disk space will be used. 118s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed/main s390x python3-minimal s390x 3.12.7-1 [27.4 kB] 119s Get:2 http://ftpmaster.internal/ubuntu plucky-proposed/main s390x python3 s390x 3.12.7-1 [24.0 kB] 119s Get:3 http://ftpmaster.internal/ubuntu plucky-proposed/main s390x libpython3-stdlib s390x 3.12.7-1 [10.0 kB] 119s Get:4 http://ftpmaster.internal/ubuntu plucky/main s390x python3.13-gdbm s390x 3.13.0-2 [31.0 kB] 119s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/main s390x python3-gdbm s390x 3.12.7-1 [8642 B] 119s Get:6 http://ftpmaster.internal/ubuntu plucky/main s390x libgpgme11t64 s390x 1.23.2-5ubuntu4 [151 kB] 119s Fetched 252 kB in 1s (502 kB/s) 119s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 55510 files and directories currently installed.) 119s Preparing to unpack .../python3-minimal_3.12.7-1_s390x.deb ... 119s Unpacking python3-minimal (3.12.7-1) over (3.12.6-0ubuntu1) ... 119s Setting up python3-minimal (3.12.7-1) ... 119s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 55510 files and directories currently installed.) 119s Preparing to unpack .../python3_3.12.7-1_s390x.deb ... 119s Unpacking python3 (3.12.7-1) over (3.12.6-0ubuntu1) ... 119s Preparing to unpack .../libpython3-stdlib_3.12.7-1_s390x.deb ... 119s Unpacking libpython3-stdlib:s390x (3.12.7-1) over (3.12.6-0ubuntu1) ... 119s Selecting previously unselected package python3.13-gdbm. 119s Preparing to unpack .../python3.13-gdbm_3.13.0-2_s390x.deb ... 119s Unpacking python3.13-gdbm (3.13.0-2) ... 119s Preparing to unpack .../python3-gdbm_3.12.7-1_s390x.deb ... 119s Unpacking python3-gdbm:s390x (3.12.7-1) over (3.12.6-1ubuntu1) ... 119s Preparing to unpack .../libgpgme11t64_1.23.2-5ubuntu4_s390x.deb ... 119s Unpacking libgpgme11t64:s390x (1.23.2-5ubuntu4) over (1.18.0-4.1ubuntu4) ... 119s Setting up libgpgme11t64:s390x (1.23.2-5ubuntu4) ... 119s Setting up python3.13-gdbm (3.13.0-2) ... 119s Setting up libpython3-stdlib:s390x (3.12.7-1) ... 119s Setting up python3 (3.12.7-1) ... 120s Setting up python3-gdbm:s390x (3.12.7-1) ... 120s Processing triggers for man-db (2.12.1-3) ... 120s Processing triggers for libc-bin (2.40-1ubuntu3) ... 120s Reading package lists... 120s Building dependency tree... 120s Reading state information... 121s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 121s Hit:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease 121s Hit:2 http://ftpmaster.internal/ubuntu plucky InRelease 121s Hit:3 http://ftpmaster.internal/ubuntu plucky-updates InRelease 121s Hit:4 http://ftpmaster.internal/ubuntu plucky-security InRelease 122s Reading package lists... 122s Reading package lists... 122s Building dependency tree... 122s Reading state information... 122s Calculating upgrade... 122s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 122s Reading package lists... 123s Building dependency tree... 123s Reading state information... 123s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 125s autopkgtest [12:05:51]: testbed running kernel: Linux 6.11.0-8-generic #8-Ubuntu SMP Mon Sep 16 12:49:35 UTC 2024 126s autopkgtest [12:05:52]: @@@@@@@@@@@@@@@@@@@@ apt-source nipy 130s Get:1 http://ftpmaster.internal/ubuntu plucky/universe nipy 0.6.1-1 (dsc) [2510 B] 130s Get:2 http://ftpmaster.internal/ubuntu plucky/universe nipy 0.6.1-1 (tar) [1653 kB] 130s Get:3 http://ftpmaster.internal/ubuntu plucky/universe nipy 0.6.1-1 (diff) [12.4 kB] 130s gpgv: Signature made Sun Oct 20 16:12:46 2024 UTC 130s gpgv: using RSA key 8F6DE104377F3B11E741748731F3144544A1741A 130s gpgv: issuer "tchet@debian.org" 130s gpgv: Can't check signature: No public key 130s dpkg-source: warning: cannot verify inline signature for ./nipy_0.6.1-1.dsc: no acceptable signature found 130s autopkgtest [12:05:56]: testing package nipy version 0.6.1-1 130s autopkgtest [12:05:56]: build not needed 131s autopkgtest [12:05:57]: test command1: preparing testbed 132s Reading package lists... 133s Building dependency tree... 133s Reading state information... 133s Starting pkgProblemResolver with broken count: 0 133s Starting 2 pkgProblemResolver with broken count: 0 133s Done 133s The following additional packages will be installed: 133s fonts-mathjax libblas3 libgfortran5 libjs-jquery libjs-mathjax 133s libjs-sphinxdoc libjs-underscore liblapack3 liblbfgsb0 python-nipy-doc 133s python3-decorator python3-iniconfig python3-mpmath python3-nibabel 133s python3-nipy python3-nipy-lib python3-numpy python3-packaging python3-pluggy 133s python3-pytest python3-scipy python3-sympy python3-transforms3d 133s Suggested packages: 133s fonts-mathjax-extras fonts-stix libjs-mathjax-doc python-mpmath-doc 133s python3-gmpy2 python3-matplotlib python-nibabel-doc python3-mvpa gcc 133s gfortran python-numpy-doc python3-dev python-scipy-doc texlive-fonts-extra 133s dvipng python-sympy-doc 133s Recommended packages: 133s javascript-common python3-pydicom python3-fuse python3-matplotlib mayavi2 133s g++ | c++-compiler python3-pil isympy-common 133s The following NEW packages will be installed: 133s autopkgtest-satdep fonts-mathjax libblas3 libgfortran5 libjs-jquery 133s libjs-mathjax libjs-sphinxdoc libjs-underscore liblapack3 liblbfgsb0 133s python-nipy-doc python3-decorator python3-iniconfig python3-mpmath 133s python3-nibabel python3-nipy python3-nipy-lib python3-numpy 133s python3-packaging python3-pluggy python3-pytest python3-scipy python3-sympy 133s python3-transforms3d 133s 0 upgraded, 24 newly installed, 0 to remove and 0 not upgraded. 133s Need to get 46.4 MB/46.4 MB of archives. 133s After this operation, 209 MB of additional disk space will be used. 133s Get:1 /tmp/autopkgtest.GTT3UH/1-autopkgtest-satdep.deb autopkgtest-satdep s390x 0 [728 B] 133s Get:2 http://ftpmaster.internal/ubuntu plucky/main s390x fonts-mathjax all 2.7.9+dfsg-1 [2208 kB] 135s Get:3 http://ftpmaster.internal/ubuntu plucky/main s390x libblas3 s390x 3.12.0-3build2 [238 kB] 135s Get:4 http://ftpmaster.internal/ubuntu plucky/main s390x libgfortran5 s390x 14.2.0-8ubuntu1 [587 kB] 135s Get:5 http://ftpmaster.internal/ubuntu plucky/main s390x libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [328 kB] 135s Get:6 http://ftpmaster.internal/ubuntu plucky/main s390x libjs-underscore all 1.13.4~dfsg+~1.11.4-3 [118 kB] 135s Get:7 http://ftpmaster.internal/ubuntu plucky/main s390x libjs-sphinxdoc all 7.4.7-4 [158 kB] 135s Get:8 http://ftpmaster.internal/ubuntu plucky/main s390x liblapack3 s390x 3.12.0-3build2 [2953 kB] 136s Get:9 http://ftpmaster.internal/ubuntu plucky/universe s390x liblbfgsb0 s390x 3.0+dfsg.4-1build1 [32.4 kB] 136s Get:10 http://ftpmaster.internal/ubuntu plucky/main s390x python3-decorator all 5.1.1-5 [10.1 kB] 136s Get:11 http://ftpmaster.internal/ubuntu plucky/universe s390x python3-iniconfig all 1.1.1-2 [6024 B] 136s Get:12 http://ftpmaster.internal/ubuntu plucky/universe s390x python3-mpmath all 1.3.0-1 [425 kB] 136s Get:13 http://ftpmaster.internal/ubuntu plucky/main s390x python3-numpy s390x 1:1.26.4+ds-11build1 [4113 kB] 137s Get:14 http://ftpmaster.internal/ubuntu plucky/main s390x python3-packaging all 24.1-1 [41.4 kB] 137s Get:15 http://ftpmaster.internal/ubuntu plucky/universe s390x python3-scipy s390x 1.13.1-5 [17.5 MB] 138s Get:16 http://ftpmaster.internal/ubuntu plucky/universe s390x python3-nibabel all 5.2.1-2 [2696 kB] 138s Get:17 http://ftpmaster.internal/ubuntu plucky/universe s390x python3-sympy all 1.13.3-1 [4228 kB] 138s Get:18 http://ftpmaster.internal/ubuntu plucky/universe s390x python3-transforms3d all 0.4.2+ds-1 [1359 kB] 138s Get:19 http://ftpmaster.internal/ubuntu plucky/universe s390x python3-nipy-lib s390x 0.6.1-1 [777 kB] 138s Get:20 http://ftpmaster.internal/ubuntu plucky/universe s390x python3-nipy all 0.6.1-1 [727 kB] 138s Get:21 http://ftpmaster.internal/ubuntu plucky/universe s390x python3-pluggy all 1.5.0-1 [21.0 kB] 138s Get:22 http://ftpmaster.internal/ubuntu plucky/universe s390x python3-pytest all 8.3.3-1 [251 kB] 138s Get:23 http://ftpmaster.internal/ubuntu plucky/main s390x libjs-mathjax all 2.7.9+dfsg-1 [5665 kB] 138s Get:24 http://ftpmaster.internal/ubuntu plucky/universe s390x python-nipy-doc all 0.6.1-1 [1970 kB] 139s Fetched 46.4 MB in 5s (8458 kB/s) 139s Selecting previously unselected package fonts-mathjax. 139s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 55517 files and directories currently installed.) 139s Preparing to unpack .../00-fonts-mathjax_2.7.9+dfsg-1_all.deb ... 139s Unpacking fonts-mathjax (2.7.9+dfsg-1) ... 139s Selecting previously unselected package libblas3:s390x. 139s Preparing to unpack .../01-libblas3_3.12.0-3build2_s390x.deb ... 139s Unpacking libblas3:s390x (3.12.0-3build2) ... 139s Selecting previously unselected package libgfortran5:s390x. 139s Preparing to unpack .../02-libgfortran5_14.2.0-8ubuntu1_s390x.deb ... 139s Unpacking libgfortran5:s390x (14.2.0-8ubuntu1) ... 139s Selecting previously unselected package libjs-jquery. 139s Preparing to unpack .../03-libjs-jquery_3.6.1+dfsg+~3.5.14-1_all.deb ... 139s Unpacking libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... 139s Selecting previously unselected package libjs-underscore. 139s Preparing to unpack .../04-libjs-underscore_1.13.4~dfsg+~1.11.4-3_all.deb ... 139s Unpacking libjs-underscore (1.13.4~dfsg+~1.11.4-3) ... 139s Selecting previously unselected package libjs-sphinxdoc. 139s Preparing to unpack .../05-libjs-sphinxdoc_7.4.7-4_all.deb ... 139s Unpacking libjs-sphinxdoc (7.4.7-4) ... 139s Selecting previously unselected package liblapack3:s390x. 139s Preparing to unpack .../06-liblapack3_3.12.0-3build2_s390x.deb ... 139s Unpacking liblapack3:s390x (3.12.0-3build2) ... 139s Selecting previously unselected package liblbfgsb0:s390x. 139s Preparing to unpack .../07-liblbfgsb0_3.0+dfsg.4-1build1_s390x.deb ... 139s Unpacking liblbfgsb0:s390x (3.0+dfsg.4-1build1) ... 139s Selecting previously unselected package python3-decorator. 139s Preparing to unpack .../08-python3-decorator_5.1.1-5_all.deb ... 139s Unpacking python3-decorator (5.1.1-5) ... 139s Selecting previously unselected package python3-iniconfig. 139s Preparing to unpack .../09-python3-iniconfig_1.1.1-2_all.deb ... 139s Unpacking python3-iniconfig (1.1.1-2) ... 139s Selecting previously unselected package python3-mpmath. 139s Preparing to unpack .../10-python3-mpmath_1.3.0-1_all.deb ... 139s Unpacking python3-mpmath (1.3.0-1) ... 139s Selecting previously unselected package python3-numpy. 139s Preparing to unpack .../11-python3-numpy_1%3a1.26.4+ds-11build1_s390x.deb ... 139s Unpacking python3-numpy (1:1.26.4+ds-11build1) ... 139s Selecting previously unselected package python3-packaging. 139s Preparing to unpack .../12-python3-packaging_24.1-1_all.deb ... 139s Unpacking python3-packaging (24.1-1) ... 139s Selecting previously unselected package python3-scipy. 139s Preparing to unpack .../13-python3-scipy_1.13.1-5_s390x.deb ... 139s Unpacking python3-scipy (1.13.1-5) ... 140s Selecting previously unselected package python3-nibabel. 140s Preparing to unpack .../14-python3-nibabel_5.2.1-2_all.deb ... 140s Unpacking python3-nibabel (5.2.1-2) ... 140s Selecting previously unselected package python3-sympy. 140s Preparing to unpack .../15-python3-sympy_1.13.3-1_all.deb ... 140s Unpacking python3-sympy (1.13.3-1) ... 140s Selecting previously unselected package python3-transforms3d. 140s Preparing to unpack .../16-python3-transforms3d_0.4.2+ds-1_all.deb ... 140s Unpacking python3-transforms3d (0.4.2+ds-1) ... 140s Selecting previously unselected package python3-nipy-lib:s390x. 140s Preparing to unpack .../17-python3-nipy-lib_0.6.1-1_s390x.deb ... 140s Unpacking python3-nipy-lib:s390x (0.6.1-1) ... 140s Selecting previously unselected package python3-nipy. 140s Preparing to unpack .../18-python3-nipy_0.6.1-1_all.deb ... 140s Unpacking python3-nipy (0.6.1-1) ... 140s Selecting previously unselected package python3-pluggy. 140s Preparing to unpack .../19-python3-pluggy_1.5.0-1_all.deb ... 140s Unpacking python3-pluggy (1.5.0-1) ... 140s Selecting previously unselected package python3-pytest. 140s Preparing to unpack .../20-python3-pytest_8.3.3-1_all.deb ... 140s Unpacking python3-pytest (8.3.3-1) ... 140s Selecting previously unselected package libjs-mathjax. 140s Preparing to unpack .../21-libjs-mathjax_2.7.9+dfsg-1_all.deb ... 140s Unpacking libjs-mathjax (2.7.9+dfsg-1) ... 140s Selecting previously unselected package python-nipy-doc. 140s Preparing to unpack .../22-python-nipy-doc_0.6.1-1_all.deb ... 140s Unpacking python-nipy-doc (0.6.1-1) ... 140s Selecting previously unselected package autopkgtest-satdep. 140s Preparing to unpack .../23-1-autopkgtest-satdep.deb ... 140s Unpacking autopkgtest-satdep (0) ... 140s Setting up python3-iniconfig (1.1.1-2) ... 141s Setting up fonts-mathjax (2.7.9+dfsg-1) ... 141s Setting up libjs-mathjax (2.7.9+dfsg-1) ... 141s Setting up python3-decorator (5.1.1-5) ... 141s Setting up libblas3:s390x (3.12.0-3build2) ... 141s update-alternatives: using /usr/lib/s390x-linux-gnu/blas/libblas.so.3 to provide /usr/lib/s390x-linux-gnu/libblas.so.3 (libblas.so.3-s390x-linux-gnu) in auto mode 141s Setting up python3-packaging (24.1-1) ... 141s Setting up libgfortran5:s390x (14.2.0-8ubuntu1) ... 141s Setting up python3-pluggy (1.5.0-1) ... 141s Setting up libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... 141s Setting up python3-mpmath (1.3.0-1) ... 141s Setting up libjs-underscore (1.13.4~dfsg+~1.11.4-3) ... 141s Setting up python3-sympy (1.13.3-1) ... 150s Setting up liblapack3:s390x (3.12.0-3build2) ... 150s update-alternatives: using /usr/lib/s390x-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/s390x-linux-gnu/liblapack.so.3 (liblapack.so.3-s390x-linux-gnu) in auto mode 150s Setting up python3-pytest (8.3.3-1) ... 150s Setting up python3-numpy (1:1.26.4+ds-11build1) ... 152s Setting up libjs-sphinxdoc (7.4.7-4) ... 152s Setting up liblbfgsb0:s390x (3.0+dfsg.4-1build1) ... 152s Setting up python3-transforms3d (0.4.2+ds-1) ... 152s Setting up python3-scipy (1.13.1-5) ... 156s Setting up python-nipy-doc (0.6.1-1) ... 156s Setting up python3-nibabel (5.2.1-2) ... 157s Setting up python3-nipy-lib:s390x (0.6.1-1) ... 157s Setting up python3-nipy (0.6.1-1) ... 158s Setting up autopkgtest-satdep (0) ... 158s Processing triggers for man-db (2.12.1-3) ... 158s Processing triggers for libc-bin (2.40-1ubuntu3) ... 160s (Reading database ... 65931 files and directories currently installed.) 160s Removing autopkgtest-satdep (0) ... 161s autopkgtest [12:06:27]: test command1: cd debian/tests && python3 -m pytest nipy_test.py 161s autopkgtest [12:06:27]: test command1: [----------------------- 161s ============================= test session starts ============================== 161s platform linux -- Python 3.12.7, pytest-8.3.3, pluggy-1.5.0 161s rootdir: /tmp/autopkgtest.GTT3UH/build.Dmw/src 161s configfile: pyproject.toml 161s plugins: typeguard-4.4.1 161s collected 4 items 161s 161s nipy_test.py .... [100%] 161s 161s =============================== warnings summary =============================== 161s debian/tests/nipy_test.py::test_image_save_to_file 161s /usr/lib/python3/dist-packages/nipy/io/files.py:141: FutureWarning: Default `strict` currently False; this will change to True in a future version of nipy 161s ni_img = nipy2nifti(img, data_dtype = io_dtype) 161s 161s -- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html 161s ========================= 4 passed, 1 warning in 0.12s ========================= 162s autopkgtest [12:06:28]: test command1: -----------------------] 162s autopkgtest [12:06:28]: test command1: - - - - - - - - - - results - - - - - - - - - - 162s command1 PASS 162s autopkgtest [12:06:28]: test autodep8-python3: preparing testbed 284s autopkgtest [12:08:30]: testbed dpkg architecture: s390x 284s autopkgtest [12:08:30]: testbed apt version: 2.9.8 284s autopkgtest [12:08:30]: @@@@@@@@@@@@@@@@@@@@ test bed setup 285s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease [73.9 kB] 285s Get:2 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse Sources [15.3 kB] 285s Get:3 http://ftpmaster.internal/ubuntu plucky-proposed/restricted Sources [7016 B] 285s Get:4 http://ftpmaster.internal/ubuntu plucky-proposed/universe Sources [849 kB] 286s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/main Sources [76.4 kB] 286s Get:6 http://ftpmaster.internal/ubuntu plucky-proposed/main s390x Packages [85.8 kB] 286s Get:7 http://ftpmaster.internal/ubuntu plucky-proposed/universe s390x Packages [565 kB] 286s Get:8 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse s390x Packages [16.6 kB] 286s Fetched 1689 kB in 1s (2033 kB/s) 286s Reading package lists... 288s Reading package lists... 288s Building dependency tree... 288s Reading state information... 288s Calculating upgrade... 288s The following NEW packages will be installed: 288s python3.13-gdbm 288s The following packages will be upgraded: 288s libgpgme11t64 libpython3-stdlib python3 python3-gdbm python3-minimal 289s 5 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. 289s Need to get 252 kB of archives. 289s After this operation, 98.3 kB of additional disk space will be used. 289s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed/main s390x python3-minimal s390x 3.12.7-1 [27.4 kB] 289s Get:2 http://ftpmaster.internal/ubuntu plucky-proposed/main s390x python3 s390x 3.12.7-1 [24.0 kB] 289s Get:3 http://ftpmaster.internal/ubuntu plucky-proposed/main s390x libpython3-stdlib s390x 3.12.7-1 [10.0 kB] 289s Get:4 http://ftpmaster.internal/ubuntu plucky/main s390x python3.13-gdbm s390x 3.13.0-2 [31.0 kB] 289s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/main s390x python3-gdbm s390x 3.12.7-1 [8642 B] 289s Get:6 http://ftpmaster.internal/ubuntu plucky/main s390x libgpgme11t64 s390x 1.23.2-5ubuntu4 [151 kB] 289s Fetched 252 kB in 0s (617 kB/s) 289s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 55510 files and directories currently installed.) 289s Preparing to unpack .../python3-minimal_3.12.7-1_s390x.deb ... 289s Unpacking python3-minimal (3.12.7-1) over (3.12.6-0ubuntu1) ... 289s Setting up python3-minimal (3.12.7-1) ... 289s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 55510 files and directories currently installed.) 289s Preparing to unpack .../python3_3.12.7-1_s390x.deb ... 290s Unpacking python3 (3.12.7-1) over (3.12.6-0ubuntu1) ... 290s Preparing to unpack .../libpython3-stdlib_3.12.7-1_s390x.deb ... 290s Unpacking libpython3-stdlib:s390x (3.12.7-1) over (3.12.6-0ubuntu1) ... 290s Selecting previously unselected package python3.13-gdbm. 290s Preparing to unpack .../python3.13-gdbm_3.13.0-2_s390x.deb ... 290s Unpacking python3.13-gdbm (3.13.0-2) ... 290s Preparing to unpack .../python3-gdbm_3.12.7-1_s390x.deb ... 290s Unpacking python3-gdbm:s390x (3.12.7-1) over (3.12.6-1ubuntu1) ... 290s Preparing to unpack .../libgpgme11t64_1.23.2-5ubuntu4_s390x.deb ... 290s Unpacking libgpgme11t64:s390x (1.23.2-5ubuntu4) over (1.18.0-4.1ubuntu4) ... 290s Setting up libgpgme11t64:s390x (1.23.2-5ubuntu4) ... 290s Setting up python3.13-gdbm (3.13.0-2) ... 290s Setting up libpython3-stdlib:s390x (3.12.7-1) ... 290s Setting up python3 (3.12.7-1) ... 290s Setting up python3-gdbm:s390x (3.12.7-1) ... 290s Processing triggers for man-db (2.12.1-3) ... 290s Processing triggers for libc-bin (2.40-1ubuntu3) ... 291s Reading package lists... 291s Building dependency tree... 291s Reading state information... 291s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 291s Hit:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease 291s Hit:2 http://ftpmaster.internal/ubuntu plucky InRelease 291s Hit:3 http://ftpmaster.internal/ubuntu plucky-updates InRelease 291s Hit:4 http://ftpmaster.internal/ubuntu plucky-security InRelease 292s Reading package lists... 292s Reading package lists... 292s Building dependency tree... 292s Reading state information... 292s Calculating upgrade... 293s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 293s Reading package lists... 293s Building dependency tree... 293s Reading state information... 293s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 297s Reading package lists... 297s Building dependency tree... 297s Reading state information... 297s Starting pkgProblemResolver with broken count: 0 297s Starting 2 pkgProblemResolver with broken count: 0 297s Done 297s The following additional packages will be installed: 297s libblas3 libgfortran5 liblapack3 liblbfgsb0 libpython3.13-minimal 297s libpython3.13-stdlib python3-all python3-decorator python3-mpmath 297s python3-nibabel python3-nipy python3-nipy-lib python3-numpy 297s python3-packaging python3-scipy python3-sympy python3-transforms3d 297s python3.13 python3.13-minimal 297s Suggested packages: 297s python-mpmath-doc python3-gmpy2 python3-matplotlib python-nibabel-doc 297s python3-mvpa gcc gfortran python-numpy-doc python3-dev python3-pytest 297s python-scipy-doc texlive-fonts-extra dvipng python-sympy-doc python3.13-venv 297s python3.13-doc binfmt-support 297s Recommended packages: 297s python3-pydicom python3-fuse python3-matplotlib mayavi2 g++ | c++-compiler 297s python3-pil isympy-common 297s The following NEW packages will be installed: 297s autopkgtest-satdep libblas3 libgfortran5 liblapack3 liblbfgsb0 297s libpython3.13-minimal libpython3.13-stdlib python3-all python3-decorator 297s python3-mpmath python3-nibabel python3-nipy python3-nipy-lib python3-numpy 297s python3-packaging python3-scipy python3-sympy python3-transforms3d 297s python3.13 python3.13-minimal 297s 0 upgraded, 20 newly installed, 0 to remove and 0 not upgraded. 297s Need to get 41.6 MB/41.6 MB of archives. 297s After this operation, 170 MB of additional disk space will be used. 297s Get:1 /tmp/autopkgtest.GTT3UH/2-autopkgtest-satdep.deb autopkgtest-satdep s390x 0 [712 B] 298s Get:2 http://ftpmaster.internal/ubuntu plucky/main s390x libpython3.13-minimal s390x 3.13.0-2 [877 kB] 298s Get:3 http://ftpmaster.internal/ubuntu plucky/main s390x python3.13-minimal s390x 3.13.0-2 [2172 kB] 298s Get:4 http://ftpmaster.internal/ubuntu plucky/main s390x libblas3 s390x 3.12.0-3build2 [238 kB] 298s Get:5 http://ftpmaster.internal/ubuntu plucky/main s390x libgfortran5 s390x 14.2.0-8ubuntu1 [587 kB] 298s Get:6 http://ftpmaster.internal/ubuntu plucky/main s390x liblapack3 s390x 3.12.0-3build2 [2953 kB] 298s Get:7 http://ftpmaster.internal/ubuntu plucky/universe s390x liblbfgsb0 s390x 3.0+dfsg.4-1build1 [32.4 kB] 298s Get:8 http://ftpmaster.internal/ubuntu plucky/main s390x libpython3.13-stdlib s390x 3.13.0-2 [2086 kB] 298s Get:9 http://ftpmaster.internal/ubuntu plucky/main s390x python3.13 s390x 3.13.0-2 [719 kB] 298s Get:10 http://ftpmaster.internal/ubuntu plucky-proposed/main s390x python3-all s390x 3.12.7-1 [890 B] 298s Get:11 http://ftpmaster.internal/ubuntu plucky/main s390x python3-decorator all 5.1.1-5 [10.1 kB] 298s Get:12 http://ftpmaster.internal/ubuntu plucky/universe s390x python3-mpmath all 1.3.0-1 [425 kB] 298s Get:13 http://ftpmaster.internal/ubuntu plucky/main s390x python3-numpy s390x 1:1.26.4+ds-11build1 [4113 kB] 298s Get:14 http://ftpmaster.internal/ubuntu plucky/main s390x python3-packaging all 24.1-1 [41.4 kB] 298s Get:15 http://ftpmaster.internal/ubuntu plucky/universe s390x python3-scipy s390x 1.13.1-5 [17.5 MB] 299s Get:16 http://ftpmaster.internal/ubuntu plucky/universe s390x python3-nibabel all 5.2.1-2 [2696 kB] 299s Get:17 http://ftpmaster.internal/ubuntu plucky/universe s390x python3-sympy all 1.13.3-1 [4228 kB] 299s Get:18 http://ftpmaster.internal/ubuntu plucky/universe s390x python3-transforms3d all 0.4.2+ds-1 [1359 kB] 299s Get:19 http://ftpmaster.internal/ubuntu plucky/universe s390x python3-nipy-lib s390x 0.6.1-1 [777 kB] 299s Get:20 http://ftpmaster.internal/ubuntu plucky/universe s390x python3-nipy all 0.6.1-1 [727 kB] 300s Fetched 41.6 MB in 2s (21.7 MB/s) 300s Selecting previously unselected package libpython3.13-minimal:s390x. 300s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 55517 files and directories currently installed.) 300s Preparing to unpack .../00-libpython3.13-minimal_3.13.0-2_s390x.deb ... 300s Unpacking libpython3.13-minimal:s390x (3.13.0-2) ... 300s Selecting previously unselected package python3.13-minimal. 300s Preparing to unpack .../01-python3.13-minimal_3.13.0-2_s390x.deb ... 300s Unpacking python3.13-minimal (3.13.0-2) ... 300s Selecting previously unselected package libblas3:s390x. 300s Preparing to unpack .../02-libblas3_3.12.0-3build2_s390x.deb ... 300s Unpacking libblas3:s390x (3.12.0-3build2) ... 300s Selecting previously unselected package libgfortran5:s390x. 300s Preparing to unpack .../03-libgfortran5_14.2.0-8ubuntu1_s390x.deb ... 300s Unpacking libgfortran5:s390x (14.2.0-8ubuntu1) ... 300s Selecting previously unselected package liblapack3:s390x. 300s Preparing to unpack .../04-liblapack3_3.12.0-3build2_s390x.deb ... 300s Unpacking liblapack3:s390x (3.12.0-3build2) ... 300s Selecting previously unselected package liblbfgsb0:s390x. 300s Preparing to unpack .../05-liblbfgsb0_3.0+dfsg.4-1build1_s390x.deb ... 300s Unpacking liblbfgsb0:s390x (3.0+dfsg.4-1build1) ... 300s Selecting previously unselected package libpython3.13-stdlib:s390x. 300s Preparing to unpack .../06-libpython3.13-stdlib_3.13.0-2_s390x.deb ... 300s Unpacking libpython3.13-stdlib:s390x (3.13.0-2) ... 300s Selecting previously unselected package python3.13. 300s Preparing to unpack .../07-python3.13_3.13.0-2_s390x.deb ... 300s Unpacking python3.13 (3.13.0-2) ... 300s Selecting previously unselected package python3-all. 300s Preparing to unpack .../08-python3-all_3.12.7-1_s390x.deb ... 300s Unpacking python3-all (3.12.7-1) ... 300s Selecting previously unselected package python3-decorator. 300s Preparing to unpack .../09-python3-decorator_5.1.1-5_all.deb ... 300s Unpacking python3-decorator (5.1.1-5) ... 300s Selecting previously unselected package python3-mpmath. 300s Preparing to unpack .../10-python3-mpmath_1.3.0-1_all.deb ... 300s Unpacking python3-mpmath (1.3.0-1) ... 300s Selecting previously unselected package python3-numpy. 300s Preparing to unpack .../11-python3-numpy_1%3a1.26.4+ds-11build1_s390x.deb ... 300s Unpacking python3-numpy (1:1.26.4+ds-11build1) ... 300s Selecting previously unselected package python3-packaging. 300s Preparing to unpack .../12-python3-packaging_24.1-1_all.deb ... 300s Unpacking python3-packaging (24.1-1) ... 300s Selecting previously unselected package python3-scipy. 300s Preparing to unpack .../13-python3-scipy_1.13.1-5_s390x.deb ... 300s Unpacking python3-scipy (1.13.1-5) ... 300s Selecting previously unselected package python3-nibabel. 300s Preparing to unpack .../14-python3-nibabel_5.2.1-2_all.deb ... 300s Unpacking python3-nibabel (5.2.1-2) ... 300s Selecting previously unselected package python3-sympy. 300s Preparing to unpack .../15-python3-sympy_1.13.3-1_all.deb ... 300s Unpacking python3-sympy (1.13.3-1) ... 301s Selecting previously unselected package python3-transforms3d. 301s Preparing to unpack .../16-python3-transforms3d_0.4.2+ds-1_all.deb ... 301s Unpacking python3-transforms3d (0.4.2+ds-1) ... 301s Selecting previously unselected package python3-nipy-lib:s390x. 301s Preparing to unpack .../17-python3-nipy-lib_0.6.1-1_s390x.deb ... 301s Unpacking python3-nipy-lib:s390x (0.6.1-1) ... 301s Selecting previously unselected package python3-nipy. 301s Preparing to unpack .../18-python3-nipy_0.6.1-1_all.deb ... 301s Unpacking python3-nipy (0.6.1-1) ... 301s Selecting previously unselected package autopkgtest-satdep. 301s Preparing to unpack .../19-2-autopkgtest-satdep.deb ... 301s Unpacking autopkgtest-satdep (0) ... 301s Setting up libpython3.13-minimal:s390x (3.13.0-2) ... 301s Setting up python3-decorator (5.1.1-5) ... 301s Setting up libblas3:s390x (3.12.0-3build2) ... 301s update-alternatives: using /usr/lib/s390x-linux-gnu/blas/libblas.so.3 to provide /usr/lib/s390x-linux-gnu/libblas.so.3 (libblas.so.3-s390x-linux-gnu) in auto mode 301s Setting up python3-packaging (24.1-1) ... 301s Setting up libgfortran5:s390x (14.2.0-8ubuntu1) ... 301s Setting up python3.13-minimal (3.13.0-2) ... 302s Setting up python3-mpmath (1.3.0-1) ... 303s Setting up libpython3.13-stdlib:s390x (3.13.0-2) ... 303s Setting up python3-sympy (1.13.3-1) ... 322s Setting up liblapack3:s390x (3.12.0-3build2) ... 322s update-alternatives: using /usr/lib/s390x-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/s390x-linux-gnu/liblapack.so.3 (liblapack.so.3-s390x-linux-gnu) in auto mode 322s Setting up python3.13 (3.13.0-2) ... 324s Setting up python3-all (3.12.7-1) ... 324s Setting up python3-numpy (1:1.26.4+ds-11build1) ... 329s Setting up liblbfgsb0:s390x (3.0+dfsg.4-1build1) ... 329s Setting up python3-transforms3d (0.4.2+ds-1) ... 330s Setting up python3-scipy (1.13.1-5) ... 339s Setting up python3-nibabel (5.2.1-2) ... 340s Setting up python3-nipy-lib:s390x (0.6.1-1) ... 340s Setting up python3-nipy (0.6.1-1) ... 342s Setting up autopkgtest-satdep (0) ... 342s Processing triggers for systemd (256.5-2ubuntu4) ... 342s Processing triggers for man-db (2.12.1-3) ... 342s Processing triggers for libc-bin (2.40-1ubuntu3) ... 344s (Reading database ... 61340 files and directories currently installed.) 344s Removing autopkgtest-satdep (0) ... 350s autopkgtest [12:09:36]: test autodep8-python3: set -e ; for py in $(py3versions -r 2>/dev/null) ; do cd "$AUTOPKGTEST_TMP" ; echo "Testing with $py:" ; $py -c "import nipy; print(nipy)" ; done 350s autopkgtest [12:09:36]: test autodep8-python3: [----------------------- 350s Testing with python3.13: 350s Traceback (most recent call last): 350s File "/usr/lib/python3/dist-packages/numpy/core/__init__.py", line 24, in 350s from . import multiarray 350s File "/usr/lib/python3/dist-packages/numpy/core/multiarray.py", line 10, in 350s from . import overrides 350s File "/usr/lib/python3/dist-packages/numpy/core/overrides.py", line 8, in 350s from numpy.core._multiarray_umath import ( 350s add_docstring, _get_implementing_args, _ArrayFunctionDispatcher) 350s ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 350s 350s During handling of the above exception, another exception occurred: 350s 350s Traceback (most recent call last): 350s File "/usr/lib/python3/dist-packages/numpy/__init__.py", line 130, in 350s from numpy.__config__ import show as show_config 350s File "/usr/lib/python3/dist-packages/numpy/__config__.py", line 4, in 350s from numpy.core._multiarray_umath import ( 350s ...<3 lines>... 350s ) 350s File "/usr/lib/python3/dist-packages/numpy/core/__init__.py", line 50, in 350s raise ImportError(msg) 350s ImportError: 350s 350s IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 350s 350s Importing the numpy C-extensions failed. This error can happen for 350s many reasons, often due to issues with your setup or how NumPy was 350s installed. 350s 350s We have compiled some common reasons and troubleshooting tips at: 350s 350s https://numpy.org/devdocs/user/troubleshooting-importerror.html 350s 350s Please note and check the following: 350s 350s * The Python version is: Python3.13 from "/usr/bin/python3.13" 350s * The NumPy version is: "1.26.4" 350s 350s and make sure that they are the versions you expect. 350s Please carefully study the documentation linked above for further help. 350s 350s Original error was: No module named 'numpy.core._multiarray_umath' 350s 350s 350s The above exception was the direct cause of the following exception: 350s 350s Traceback (most recent call last): 350s File "", line 1, in 350s import nipy; print(nipy) 350s ^^^^^^^^^^^ 350s File "/usr/lib/python3/dist-packages/nipy/__init__.py", line 30, in 350s from nipy.core.api import is_image 350s File "/usr/lib/python3/dist-packages/nipy/core/api.py", line 14, in 350s from .image.image import ( 350s ...<7 lines>... 350s ) 350s File "/usr/lib/python3/dist-packages/nipy/core/image/__init__.py", line 13, in 350s from . import image 350s File "/usr/lib/python3/dist-packages/nipy/core/image/image.py", line 19, in 350s import numpy as np 350s File "/usr/lib/python3/dist-packages/numpy/__init__.py", line 135, in 350s raise ImportError(msg) from e 350s ImportError: Error importing numpy: you should not try to import numpy from 350s its source directory; please exit the numpy source tree, and relaunch 350s your python interpreter from there. 350s autopkgtest [12:09:36]: test autodep8-python3: -----------------------] 351s autopkgtest [12:09:37]: test autodep8-python3: - - - - - - - - - - results - - - - - - - - - - 351s autodep8-python3 FAIL non-zero exit status 1 351s autopkgtest [12:09:37]: @@@@@@@@@@@@@@@@@@@@ summary 351s command1 PASS 351s autodep8-python3 FAIL non-zero exit status 1 363s virt: nova [W] Using flock in prodstack6-s390x 363s virt: Creating nova instance adt-plucky-s390x-nipy-20241113-120345-juju-7f2275-prod-proposed-migration-environment-2-f2dd24c2-8361-4787-b691-224b19b71f71 from image adt/ubuntu-plucky-s390x-server-20241113.img (UUID e740277e-1f72-40ae-bfbe-46030537c71c)... 363s virt: nova [W] Using flock in prodstack6-s390x 363s virt: Creating nova instance adt-plucky-s390x-nipy-20241113-120345-juju-7f2275-prod-proposed-migration-environment-2-f2dd24c2-8361-4787-b691-224b19b71f71 from image adt/ubuntu-plucky-s390x-server-20241113.img (UUID e740277e-1f72-40ae-bfbe-46030537c71c)...