0s autopkgtest [10:48:22]: starting date and time: 2025-03-13 10:48:22+0000
  0s autopkgtest [10:48:22]: git checkout: 325255d2 Merge branch 'pin-any-arch' into 'ubuntu/production'
  0s autopkgtest [10:48:22]: host juju-7f2275-prod-proposed-migration-environment-2; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.g4c56fry/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:last-align --apt-upgrade nanook --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=last-align/1609-1 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest-s390x --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-2@bos03-s390x-28.secgroup --name adt-plucky-s390x-nanook-20250313-104822-juju-7f2275-prod-proposed-migration-environment-2-6b82b553-6e3c-49f5-b33b-fef7478e820b --image adt/ubuntu-plucky-s390x-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-2 --net-id=net_prod-proposed-migration-s390x -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,keyserver.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com,radosgw.ps5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/
105s autopkgtest [10:50:07]: testbed dpkg architecture: s390x
105s autopkgtest [10:50:07]: testbed apt version: 2.9.32ubuntu1
105s autopkgtest [10:50:07]: @@@@@@@@@@@@@@@@@@@@ test bed setup
105s autopkgtest [10:50:07]: testbed release detected to be: None
106s autopkgtest [10:50:08]: updating testbed package index (apt update)
106s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease [110 kB]
107s Hit:2 http://ftpmaster.internal/ubuntu plucky InRelease
107s Hit:3 http://ftpmaster.internal/ubuntu plucky-updates InRelease
107s Hit:4 http://ftpmaster.internal/ubuntu plucky-security InRelease
107s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse Sources [11.5 kB]
107s Get:6 http://ftpmaster.internal/ubuntu plucky-proposed/main Sources [43.9 kB]
107s Get:7 http://ftpmaster.internal/ubuntu plucky-proposed/universe Sources [396 kB]
107s Get:8 http://ftpmaster.internal/ubuntu plucky-proposed/main s390x Packages [57.9 kB]
107s Get:9 http://ftpmaster.internal/ubuntu plucky-proposed/universe s390x Packages [313 kB]
107s Get:10 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse s390x Packages [2512 B]
107s Fetched 936 kB in 1s (1149 kB/s)
108s Reading package lists...
108s Reading package lists...
109s Building dependency tree...
109s Reading state information...
109s Calculating upgrade...
109s Calculating upgrade...
109s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
109s Reading package lists...
109s Building dependency tree...
109s Reading state information...
109s Solving dependencies...
109s The following packages will be REMOVED:
109s   linux-image-6.11.0-8-generic*
109s 0 upgraded, 0 newly installed, 1 to remove and 0 not upgraded.
109s After this operation, 10.5 MB disk space will be freed.
110s (Reading database ... 
(Reading database ... 5%
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(Reading database ... 45%
(Reading database ... 50%
(Reading database ... 55%
(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 81495 files and directories currently installed.)
110s Removing linux-image-6.11.0-8-generic (6.11.0-8.8) ...
110s I: /boot/vmlinuz.old is now a symlink to vmlinuz-6.14.0-7-generic
110s I: /boot/initrd.img.old is now a symlink to initrd.img-6.14.0-7-generic
110s /etc/kernel/postrm.d/initramfs-tools:
110s update-initramfs: Deleting /boot/initrd.img-6.11.0-8-generic
110s /etc/kernel/postrm.d/zz-zipl:
110s Using config file '/etc/zipl.conf'
110s Building bootmap in '/boot'
110s Adding IPL section 'ubuntu' (default)
110s Preparing boot device for LD-IPL: vda (0000).
110s Done.
110s (Reading database ... 
(Reading database ... 5%
(Reading database ... 10%
(Reading database ... 15%
(Reading database ... 20%
(Reading database ... 25%
(Reading database ... 30%
(Reading database ... 35%
(Reading database ... 40%
(Reading database ... 45%
(Reading database ... 50%
(Reading database ... 55%
(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 81491 files and directories currently installed.)
110s Purging configuration files for linux-image-6.11.0-8-generic (6.11.0-8.8) ...
110s rmdir: failed to remove '/lib/modules/6.11.0-8-generic': Directory not empty
110s autopkgtest [10:50:12]: upgrading testbed (apt dist-upgrade and autopurge)
110s Reading package lists...
110s Building dependency tree...
110s Reading state information...
111s Calculating upgrade...Starting pkgProblemResolver with broken count: 0
111s Starting 2 pkgProblemResolver with broken count: 0
111s Done
111s Entering ResolveByKeep
111s 
111s Calculating upgrade...
111s The following packages were automatically installed and are no longer required:
111s   libnsl2 libpython3.12-minimal libpython3.12-stdlib libpython3.12t64
111s   linux-headers-6.11.0-8 linux-headers-6.11.0-8-generic
111s   linux-modules-6.11.0-8-generic linux-tools-6.11.0-8
111s   linux-tools-6.11.0-8-generic
111s Use 'sudo apt autoremove' to remove them.
111s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
111s Reading package lists...
111s Building dependency tree...
111s Reading state information...
111s Starting pkgProblemResolver with broken count: 0
111s Starting 2 pkgProblemResolver with broken count: 0
111s Done
112s Solving dependencies...
112s The following packages will be REMOVED:
112s   libnsl2* libpython3.12-minimal* libpython3.12-stdlib* libpython3.12t64*
112s   linux-headers-6.11.0-8* linux-headers-6.11.0-8-generic*
112s   linux-modules-6.11.0-8-generic* linux-tools-6.11.0-8*
112s   linux-tools-6.11.0-8-generic*
112s 0 upgraded, 0 newly installed, 9 to remove and 0 not upgraded.
112s After this operation, 167 MB disk space will be freed.
112s (Reading database ... 
(Reading database ... 5%
(Reading database ... 10%
(Reading database ... 15%
(Reading database ... 20%
(Reading database ... 25%
(Reading database ... 30%
(Reading database ... 35%
(Reading database ... 40%
(Reading database ... 45%
(Reading database ... 50%
(Reading database ... 55%
(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 81491 files and directories currently installed.)
112s Removing linux-tools-6.11.0-8-generic (6.11.0-8.8) ...
112s Removing linux-tools-6.11.0-8 (6.11.0-8.8) ...
112s Removing libpython3.12t64:s390x (3.12.9-1) ...
112s Removing libpython3.12-stdlib:s390x (3.12.9-1) ...
112s Removing libnsl2:s390x (1.3.0-3build3) ...
112s Removing libpython3.12-minimal:s390x (3.12.9-1) ...
112s Removing linux-headers-6.11.0-8-generic (6.11.0-8.8) ...
112s Removing linux-headers-6.11.0-8 (6.11.0-8.8) ...
113s Removing linux-modules-6.11.0-8-generic (6.11.0-8.8) ...
113s Processing triggers for libc-bin (2.41-1ubuntu1) ...
113s (Reading database ... 
(Reading database ... 5%
(Reading database ... 10%
(Reading database ... 15%
(Reading database ... 20%
(Reading database ... 25%
(Reading database ... 30%
(Reading database ... 35%
(Reading database ... 40%
(Reading database ... 45%
(Reading database ... 50%
(Reading database ... 55%
(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 56391 files and directories currently installed.)
113s Purging configuration files for libpython3.12-minimal:s390x (3.12.9-1) ...
113s Purging configuration files for linux-modules-6.11.0-8-generic (6.11.0-8.8) ...
113s autopkgtest [10:50:15]: rebooting testbed after setup commands that affected boot
133s autopkgtest [10:50:35]: testbed running kernel: Linux 6.14.0-7-generic #7-Ubuntu SMP Fri Feb 28 10:57:32 UTC 2025
136s autopkgtest [10:50:38]: @@@@@@@@@@@@@@@@@@@@ apt-source nanook
138s Get:1 http://ftpmaster.internal/ubuntu plucky/universe nanook 1.33+dfsg-6 (dsc) [2220 B]
138s Get:2 http://ftpmaster.internal/ubuntu plucky/universe nanook 1.33+dfsg-6 (tar) [95.2 kB]
138s Get:3 http://ftpmaster.internal/ubuntu plucky/universe nanook 1.33+dfsg-6 (diff) [1818 kB]
138s gpgv: Signature made Wed Dec 18 14:21:48 2024 UTC
138s gpgv:                using RSA key 8F91B227C7D6F2B1948C8236793CF67E8F0D11DA
138s gpgv:                issuer "emollier@debian.org"
138s gpgv: Can't check signature: No public key
138s dpkg-source: warning: cannot verify inline signature for ./nanook_1.33+dfsg-6.dsc: no acceptable signature found
138s autopkgtest [10:50:40]: testing package nanook version 1.33+dfsg-6
139s autopkgtest [10:50:41]: build not needed
139s autopkgtest [10:50:41]: test run-unit-test: preparing testbed
139s Reading package lists...
140s Building dependency tree...
140s Reading state information...
140s Starting pkgProblemResolver with broken count: 0
140s Starting 2 pkgProblemResolver with broken count: 0
140s Done
140s The following NEW packages will be installed:
140s   ca-certificates-java default-jre-headless fontconfig fontconfig-config
140s   fonts-dejavu-core fonts-dejavu-mono fonts-lmodern hdf5-tools java-common
140s   last-align libaec0 libapache-pom-java libblas3 libcairo2 libcommons-io-java
140s   libcommons-parent-java libdatrie1 libdeflate0 libfontconfig1 libfreetype6
140s   libgfortran5 libgomp1 libgraphite2-3 libharfbuzz0b libhdf5-310
140s   libhdf5-hl-310 libice6 libjbig0 libjpeg-turbo8 libjpeg8 libkpathsea6
140s   liblapack3 liblcms2-2 libmpfi0 libpango-1.0-0 libpangocairo-1.0-0
140s   libpangoft2-1.0-0 libpaper-utils libpaper2 libpcsclite1 libpixman-1-0
140s   libpotrace0 libptexenc1 libsharpyuv0 libsm6 libsynctex2 libsz2 libtcl8.6
140s   libteckit0 libtexlua53-5 libthai-data libthai0 libtiff6 libtk8.6 libwebp7
140s   libxaw7 libxcb-render0 libxcb-shm0 libxft2 libxi6 libxmu6 libxpm4
140s   libxrender1 libxss1 libxt6t64 libzzip-0-13t64 littler nanook nanook-examples
140s   openjdk-21-jre-headless r-base-core r-cran-cli r-cran-colorspace
140s   r-cran-fansi r-cran-farver r-cran-ggplot2 r-cran-glue r-cran-gridextra
140s   r-cran-gtable r-cran-isoband r-cran-labeling r-cran-lattice r-cran-lifecycle
140s   r-cran-littler r-cran-magrittr r-cran-mass r-cran-matrix r-cran-mgcv
140s   r-cran-munsell r-cran-nlme r-cran-pillar r-cran-pkgconfig r-cran-pkgkitten
140s   r-cran-plyr r-cran-r6 r-cran-rcolorbrewer r-cran-rcpp r-cran-reshape
140s   r-cran-rlang r-cran-scales r-cran-tibble r-cran-utf8 r-cran-vctrs
140s   r-cran-viridislite r-cran-withr t1utils tex-common texlive-base
140s   texlive-binaries texlive-latex-base unzip x11-common xdg-utils zip
140s 0 upgraded, 114 newly installed, 0 to remove and 0 not upgraded.
140s Need to get 163 MB of archives.
140s After this operation, 456 MB of additional disk space will be used.
140s Get:1 http://ftpmaster.internal/ubuntu plucky/main s390x ca-certificates-java all 20240118 [11.6 kB]
140s Get:2 http://ftpmaster.internal/ubuntu plucky/main s390x java-common all 0.76 [6852 B]
140s Get:3 http://ftpmaster.internal/ubuntu plucky/main s390x liblcms2-2 s390x 2.16-2 [175 kB]
140s Get:4 http://ftpmaster.internal/ubuntu plucky/main s390x libjpeg-turbo8 s390x 2.1.5-3ubuntu2 [147 kB]
141s Get:5 http://ftpmaster.internal/ubuntu plucky/main s390x libjpeg8 s390x 8c-2ubuntu11 [2146 B]
141s Get:6 http://ftpmaster.internal/ubuntu plucky/main s390x libpcsclite1 s390x 2.3.1-1 [24.5 kB]
141s Get:7 http://ftpmaster.internal/ubuntu plucky/main s390x openjdk-21-jre-headless s390x 21.0.6+7-1 [43.8 MB]
142s Get:8 http://ftpmaster.internal/ubuntu plucky/main s390x default-jre-headless s390x 2:1.21-76 [3182 B]
142s Get:9 http://ftpmaster.internal/ubuntu plucky/main s390x libfreetype6 s390x 2.13.3+dfsg-1 [431 kB]
142s Get:10 http://ftpmaster.internal/ubuntu plucky/main s390x fonts-dejavu-mono all 2.37-8 [502 kB]
142s Get:11 http://ftpmaster.internal/ubuntu plucky/main s390x fonts-dejavu-core all 2.37-8 [835 kB]
142s Get:12 http://ftpmaster.internal/ubuntu plucky/main s390x fontconfig-config s390x 2.15.0-2ubuntu1 [37.5 kB]
142s Get:13 http://ftpmaster.internal/ubuntu plucky/main s390x libfontconfig1 s390x 2.15.0-2ubuntu1 [150 kB]
142s Get:14 http://ftpmaster.internal/ubuntu plucky/main s390x fontconfig s390x 2.15.0-2ubuntu1 [191 kB]
142s Get:15 http://ftpmaster.internal/ubuntu plucky/universe s390x fonts-lmodern all 2.005-1 [4799 kB]
143s Get:16 http://ftpmaster.internal/ubuntu plucky/universe s390x libaec0 s390x 1.1.3-1 [25.7 kB]
143s Get:17 http://ftpmaster.internal/ubuntu plucky/universe s390x libsz2 s390x 1.1.3-1 [5442 B]
143s Get:18 http://ftpmaster.internal/ubuntu plucky/universe s390x libhdf5-310 s390x 1.14.5+repack-3 [1477 kB]
143s Get:19 http://ftpmaster.internal/ubuntu plucky/universe s390x libhdf5-hl-310 s390x 1.14.5+repack-3 [61.0 kB]
143s Get:20 http://ftpmaster.internal/ubuntu plucky/universe s390x hdf5-tools s390x 1.14.5+repack-3 [403 kB]
143s Get:21 http://ftpmaster.internal/ubuntu plucky-proposed/universe s390x last-align s390x 1609-1 [1017 kB]
143s Get:22 http://ftpmaster.internal/ubuntu plucky/universe s390x libapache-pom-java all 33-2 [5874 B]
143s Get:23 http://ftpmaster.internal/ubuntu plucky/main s390x libblas3 s390x 3.12.1-2 [252 kB]
143s Get:24 http://ftpmaster.internal/ubuntu plucky/main s390x libpixman-1-0 s390x 0.44.0-3 [201 kB]
143s Get:25 http://ftpmaster.internal/ubuntu plucky/main s390x libxcb-render0 s390x 1.17.0-2 [17.0 kB]
143s Get:26 http://ftpmaster.internal/ubuntu plucky/main s390x libxcb-shm0 s390x 1.17.0-2 [5862 B]
143s Get:27 http://ftpmaster.internal/ubuntu plucky/main s390x libxrender1 s390x 1:0.9.10-1.1build1 [20.4 kB]
143s Get:28 http://ftpmaster.internal/ubuntu plucky/main s390x libcairo2 s390x 1.18.2-2 [580 kB]
143s Get:29 http://ftpmaster.internal/ubuntu plucky/universe s390x libcommons-parent-java all 56-1 [10.7 kB]
143s Get:30 http://ftpmaster.internal/ubuntu plucky/universe s390x libcommons-io-java all 2.18.0-1 [477 kB]
143s Get:31 http://ftpmaster.internal/ubuntu plucky/main s390x libdatrie1 s390x 0.2.13-3build1 [20.6 kB]
143s Get:32 http://ftpmaster.internal/ubuntu plucky/main s390x libdeflate0 s390x 1.23-1 [46.1 kB]
143s Get:33 http://ftpmaster.internal/ubuntu plucky/main s390x libgfortran5 s390x 15-20250222-0ubuntu1 [620 kB]
143s Get:34 http://ftpmaster.internal/ubuntu plucky/main s390x libgomp1 s390x 15-20250222-0ubuntu1 [152 kB]
143s Get:35 http://ftpmaster.internal/ubuntu plucky/main s390x libgraphite2-3 s390x 1.3.14-2ubuntu1 [79.8 kB]
143s Get:36 http://ftpmaster.internal/ubuntu plucky/main s390x libharfbuzz0b s390x 10.2.0-1 [538 kB]
143s Get:37 http://ftpmaster.internal/ubuntu plucky/main s390x x11-common all 1:7.7+23ubuntu3 [21.7 kB]
143s Get:38 http://ftpmaster.internal/ubuntu plucky/main s390x libice6 s390x 2:1.1.1-1 [45.4 kB]
143s Get:39 http://ftpmaster.internal/ubuntu plucky/main s390x libkpathsea6 s390x 2024.20240313.70630+ds-5build2 [66.9 kB]
143s Get:40 http://ftpmaster.internal/ubuntu plucky/main s390x liblapack3 s390x 3.12.1-2 [2971 kB]
143s Get:41 http://ftpmaster.internal/ubuntu plucky/universe s390x libmpfi0 s390x 1.5.4+ds-4 [34.1 kB]
143s Get:42 http://ftpmaster.internal/ubuntu plucky/main s390x libthai-data all 0.1.29-2build1 [158 kB]
143s Get:43 http://ftpmaster.internal/ubuntu plucky/main s390x libthai0 s390x 0.1.29-2build1 [20.7 kB]
143s Get:44 http://ftpmaster.internal/ubuntu plucky/main s390x libpango-1.0-0 s390x 1.56.1-1 [253 kB]
143s Get:45 http://ftpmaster.internal/ubuntu plucky/main s390x libpangoft2-1.0-0 s390x 1.56.1-1 [50.3 kB]
143s Get:46 http://ftpmaster.internal/ubuntu plucky/main s390x libpangocairo-1.0-0 s390x 1.56.1-1 [28.3 kB]
143s Get:47 http://ftpmaster.internal/ubuntu plucky/main s390x libpaper2 s390x 2.2.5-0.3 [17.2 kB]
143s Get:48 http://ftpmaster.internal/ubuntu plucky/main s390x libpaper-utils s390x 2.2.5-0.3 [15.3 kB]
143s Get:49 http://ftpmaster.internal/ubuntu plucky/universe s390x libpotrace0 s390x 1.16-2build1 [18.7 kB]
143s Get:50 http://ftpmaster.internal/ubuntu plucky/main s390x libptexenc1 s390x 2024.20240313.70630+ds-5build2 [43.4 kB]
143s Get:51 http://ftpmaster.internal/ubuntu plucky/main s390x libsharpyuv0 s390x 1.5.0-0.1 [16.7 kB]
143s Get:52 http://ftpmaster.internal/ubuntu plucky/main s390x libsm6 s390x 2:1.2.4-1 [18.4 kB]
143s Get:53 http://ftpmaster.internal/ubuntu plucky/main s390x libsynctex2 s390x 2024.20240313.70630+ds-5build2 [64.6 kB]
143s Get:54 http://ftpmaster.internal/ubuntu plucky/main s390x libtcl8.6 s390x 8.6.16+dfsg-1 [1034 kB]
143s Get:55 http://ftpmaster.internal/ubuntu plucky/universe s390x libteckit0 s390x 2.5.12+ds1-1 [433 kB]
143s Get:56 http://ftpmaster.internal/ubuntu plucky/main s390x libtexlua53-5 s390x 2024.20240313.70630+ds-5build2 [131 kB]
143s Get:57 http://ftpmaster.internal/ubuntu plucky/main s390x libjbig0 s390x 2.1-6.1ubuntu2 [33.1 kB]
143s Get:58 http://ftpmaster.internal/ubuntu plucky/main s390x libwebp7 s390x 1.5.0-0.1 [210 kB]
143s Get:59 http://ftpmaster.internal/ubuntu plucky/main s390x libtiff6 s390x 4.5.1+git230720-4ubuntu4 [217 kB]
143s Get:60 http://ftpmaster.internal/ubuntu plucky/main s390x libxft2 s390x 2.3.6-1build1 [49.6 kB]
143s Get:61 http://ftpmaster.internal/ubuntu plucky/main s390x libxss1 s390x 1:1.2.3-1build3 [7396 B]
143s Get:62 http://ftpmaster.internal/ubuntu plucky/main s390x libtk8.6 s390x 8.6.16-1 [830 kB]
143s Get:63 http://ftpmaster.internal/ubuntu plucky/main s390x libxt6t64 s390x 1:1.2.1-1.2build1 [184 kB]
143s Get:64 http://ftpmaster.internal/ubuntu plucky/main s390x libxmu6 s390x 2:1.1.3-3build2 [53.0 kB]
143s Get:65 http://ftpmaster.internal/ubuntu plucky/main s390x libxpm4 s390x 1:3.5.17-1build2 [41.2 kB]
143s Get:66 http://ftpmaster.internal/ubuntu plucky/main s390x libxaw7 s390x 2:1.0.16-1 [201 kB]
143s Get:67 http://ftpmaster.internal/ubuntu plucky/main s390x libxi6 s390x 2:1.8.2-1 [35.4 kB]
143s Get:68 http://ftpmaster.internal/ubuntu plucky/universe s390x libzzip-0-13t64 s390x 0.13.78+dfsg.1-0.1 [29.8 kB]
143s Get:69 http://ftpmaster.internal/ubuntu plucky/main s390x zip s390x 3.0-14ubuntu2 [187 kB]
143s Get:70 http://ftpmaster.internal/ubuntu plucky/main s390x unzip s390x 6.0-28ubuntu6 [186 kB]
143s Get:71 http://ftpmaster.internal/ubuntu plucky/main s390x xdg-utils all 1.2.1-2ubuntu1 [66.0 kB]
143s Get:72 http://ftpmaster.internal/ubuntu plucky/universe s390x r-base-core s390x 4.4.3-1 [28.6 MB]
144s Get:73 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-littler s390x 0.3.20-2 [95.0 kB]
144s Get:74 http://ftpmaster.internal/ubuntu plucky/universe s390x littler all 0.3.20-2 [2554 B]
144s Get:75 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-cli s390x 3.6.4-1 [1379 kB]
144s Get:76 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-glue s390x 1.8.0-1 [164 kB]
144s Get:77 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-rlang s390x 1.1.5-1 [1713 kB]
144s Get:78 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-lifecycle all 1.0.4+dfsg-1 [110 kB]
144s Get:79 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-gtable all 0.3.6+dfsg-1 [199 kB]
144s Get:80 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-isoband s390x 0.2.7-1 [1481 kB]
144s Get:81 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-mass s390x 7.3-64-1 [1113 kB]
144s Get:82 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-lattice s390x 0.22-6-1 [1340 kB]
145s Get:83 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-nlme s390x 3.1.167-1 [2323 kB]
145s Get:84 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-matrix s390x 1.7-2-1 [4441 kB]
145s Get:85 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-mgcv s390x 1.9-1-1 [3348 kB]
145s Get:86 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-farver s390x 2.1.2-1 [1353 kB]
145s Get:87 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-labeling all 0.4.3-1 [62.1 kB]
145s Get:88 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-colorspace s390x 2.1-1+dfsg-1 [1567 kB]
145s Get:89 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-munsell all 0.5.1-1 [213 kB]
145s Get:90 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-r6 all 2.6.1-1 [101 kB]
145s Get:91 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-rcolorbrewer all 1.1-3-1build1 [55.4 kB]
145s Get:92 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-viridislite all 0.4.2-2 [1088 kB]
145s Get:93 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-scales all 1.3.0-1 [603 kB]
145s Get:94 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-fansi s390x 1.0.5-1 [615 kB]
145s Get:95 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-magrittr s390x 2.0.3-1 [154 kB]
145s Get:96 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-utf8 s390x 1.2.4-1 [143 kB]
145s Get:97 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-vctrs s390x 0.6.5-1 [1448 kB]
145s Get:98 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-pillar all 1.10.1+dfsg-1 [453 kB]
145s Get:99 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-pkgconfig all 2.0.3-2build1 [19.7 kB]
145s Get:100 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-tibble s390x 3.2.1+dfsg-3 [420 kB]
145s Get:101 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-withr all 3.0.2+dfsg-1 [214 kB]
145s Get:102 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-ggplot2 all 3.5.1+dfsg-1 [3940 kB]
146s Get:103 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-gridextra all 2.3-3build1 [1024 kB]
146s Get:104 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-pkgkitten all 0.2.4-1 [27.2 kB]
146s Get:105 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-rcpp s390x 1.0.14-1 [2003 kB]
146s Get:106 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-plyr s390x 1.8.9-1 [835 kB]
146s Get:107 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-reshape all 0.8.9-1 [168 kB]
146s Get:108 http://ftpmaster.internal/ubuntu plucky/universe s390x tex-common all 6.19 [29.8 kB]
146s Get:109 http://ftpmaster.internal/ubuntu plucky/main s390x t1utils s390x 1.41-4build3 [65.6 kB]
146s Get:110 http://ftpmaster.internal/ubuntu plucky/universe s390x texlive-binaries s390x 2024.20240313.70630+ds-5build2 [9171 kB]
147s Get:111 http://ftpmaster.internal/ubuntu plucky/universe s390x texlive-base all 2024.20250114-1 [22.5 MB]
147s Get:112 http://ftpmaster.internal/ubuntu plucky/universe s390x texlive-latex-base all 2024.20250114-1 [1264 kB]
148s Get:113 http://ftpmaster.internal/ubuntu plucky/universe s390x nanook all 1.33+dfsg-6 [195 kB]
148s Get:114 http://ftpmaster.internal/ubuntu plucky/universe s390x nanook-examples all 1.33+dfsg-6 [1814 kB]
148s Preconfiguring packages ...
148s Fetched 163 MB in 8s (21.5 MB/s)
148s Selecting previously unselected package ca-certificates-java.
148s (Reading database ... 
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148s Preparing to unpack .../000-ca-certificates-java_20240118_all.deb ...
148s Unpacking ca-certificates-java (20240118) ...
148s Selecting previously unselected package java-common.
148s Preparing to unpack .../001-java-common_0.76_all.deb ...
148s Unpacking java-common (0.76) ...
148s Selecting previously unselected package liblcms2-2:s390x.
148s Preparing to unpack .../002-liblcms2-2_2.16-2_s390x.deb ...
148s Unpacking liblcms2-2:s390x (2.16-2) ...
148s Selecting previously unselected package libjpeg-turbo8:s390x.
148s Preparing to unpack .../003-libjpeg-turbo8_2.1.5-3ubuntu2_s390x.deb ...
148s Unpacking libjpeg-turbo8:s390x (2.1.5-3ubuntu2) ...
148s Selecting previously unselected package libjpeg8:s390x.
148s Preparing to unpack .../004-libjpeg8_8c-2ubuntu11_s390x.deb ...
148s Unpacking libjpeg8:s390x (8c-2ubuntu11) ...
148s Selecting previously unselected package libpcsclite1:s390x.
148s Preparing to unpack .../005-libpcsclite1_2.3.1-1_s390x.deb ...
148s Unpacking libpcsclite1:s390x (2.3.1-1) ...
148s Selecting previously unselected package openjdk-21-jre-headless:s390x.
148s Preparing to unpack .../006-openjdk-21-jre-headless_21.0.6+7-1_s390x.deb ...
148s Unpacking openjdk-21-jre-headless:s390x (21.0.6+7-1) ...
149s Selecting previously unselected package default-jre-headless.
149s Preparing to unpack .../007-default-jre-headless_2%3a1.21-76_s390x.deb ...
149s Unpacking default-jre-headless (2:1.21-76) ...
149s Selecting previously unselected package libfreetype6:s390x.
149s Preparing to unpack .../008-libfreetype6_2.13.3+dfsg-1_s390x.deb ...
149s Unpacking libfreetype6:s390x (2.13.3+dfsg-1) ...
149s Selecting previously unselected package fonts-dejavu-mono.
149s Preparing to unpack .../009-fonts-dejavu-mono_2.37-8_all.deb ...
149s Unpacking fonts-dejavu-mono (2.37-8) ...
149s Selecting previously unselected package fonts-dejavu-core.
149s Preparing to unpack .../010-fonts-dejavu-core_2.37-8_all.deb ...
149s Unpacking fonts-dejavu-core (2.37-8) ...
149s Selecting previously unselected package fontconfig-config.
149s Preparing to unpack .../011-fontconfig-config_2.15.0-2ubuntu1_s390x.deb ...
149s Unpacking fontconfig-config (2.15.0-2ubuntu1) ...
149s Selecting previously unselected package libfontconfig1:s390x.
149s Preparing to unpack .../012-libfontconfig1_2.15.0-2ubuntu1_s390x.deb ...
149s Unpacking libfontconfig1:s390x (2.15.0-2ubuntu1) ...
149s Selecting previously unselected package fontconfig.
149s Preparing to unpack .../013-fontconfig_2.15.0-2ubuntu1_s390x.deb ...
149s Unpacking fontconfig (2.15.0-2ubuntu1) ...
149s Selecting previously unselected package fonts-lmodern.
149s Preparing to unpack .../014-fonts-lmodern_2.005-1_all.deb ...
149s Unpacking fonts-lmodern (2.005-1) ...
149s Selecting previously unselected package libaec0:s390x.
149s Preparing to unpack .../015-libaec0_1.1.3-1_s390x.deb ...
149s Unpacking libaec0:s390x (1.1.3-1) ...
149s Selecting previously unselected package libsz2:s390x.
149s Preparing to unpack .../016-libsz2_1.1.3-1_s390x.deb ...
149s Unpacking libsz2:s390x (1.1.3-1) ...
149s Selecting previously unselected package libhdf5-310:s390x.
149s Preparing to unpack .../017-libhdf5-310_1.14.5+repack-3_s390x.deb ...
149s Unpacking libhdf5-310:s390x (1.14.5+repack-3) ...
149s Selecting previously unselected package libhdf5-hl-310:s390x.
149s Preparing to unpack .../018-libhdf5-hl-310_1.14.5+repack-3_s390x.deb ...
149s Unpacking libhdf5-hl-310:s390x (1.14.5+repack-3) ...
149s Selecting previously unselected package hdf5-tools.
149s Preparing to unpack .../019-hdf5-tools_1.14.5+repack-3_s390x.deb ...
149s Unpacking hdf5-tools (1.14.5+repack-3) ...
149s Selecting previously unselected package last-align.
149s Preparing to unpack .../020-last-align_1609-1_s390x.deb ...
149s Unpacking last-align (1609-1) ...
149s Selecting previously unselected package libapache-pom-java.
149s Preparing to unpack .../021-libapache-pom-java_33-2_all.deb ...
149s Unpacking libapache-pom-java (33-2) ...
149s Selecting previously unselected package libblas3:s390x.
149s Preparing to unpack .../022-libblas3_3.12.1-2_s390x.deb ...
149s Unpacking libblas3:s390x (3.12.1-2) ...
149s Selecting previously unselected package libpixman-1-0:s390x.
149s Preparing to unpack .../023-libpixman-1-0_0.44.0-3_s390x.deb ...
149s Unpacking libpixman-1-0:s390x (0.44.0-3) ...
149s Selecting previously unselected package libxcb-render0:s390x.
149s Preparing to unpack .../024-libxcb-render0_1.17.0-2_s390x.deb ...
149s Unpacking libxcb-render0:s390x (1.17.0-2) ...
149s Selecting previously unselected package libxcb-shm0:s390x.
149s Preparing to unpack .../025-libxcb-shm0_1.17.0-2_s390x.deb ...
149s Unpacking libxcb-shm0:s390x (1.17.0-2) ...
149s Selecting previously unselected package libxrender1:s390x.
149s Preparing to unpack .../026-libxrender1_1%3a0.9.10-1.1build1_s390x.deb ...
149s Unpacking libxrender1:s390x (1:0.9.10-1.1build1) ...
149s Selecting previously unselected package libcairo2:s390x.
149s Preparing to unpack .../027-libcairo2_1.18.2-2_s390x.deb ...
149s Unpacking libcairo2:s390x (1.18.2-2) ...
149s Selecting previously unselected package libcommons-parent-java.
149s Preparing to unpack .../028-libcommons-parent-java_56-1_all.deb ...
149s Unpacking libcommons-parent-java (56-1) ...
149s Selecting previously unselected package libcommons-io-java.
149s Preparing to unpack .../029-libcommons-io-java_2.18.0-1_all.deb ...
149s Unpacking libcommons-io-java (2.18.0-1) ...
149s Selecting previously unselected package libdatrie1:s390x.
149s Preparing to unpack .../030-libdatrie1_0.2.13-3build1_s390x.deb ...
149s Unpacking libdatrie1:s390x (0.2.13-3build1) ...
149s Selecting previously unselected package libdeflate0:s390x.
149s Preparing to unpack .../031-libdeflate0_1.23-1_s390x.deb ...
149s Unpacking libdeflate0:s390x (1.23-1) ...
149s Selecting previously unselected package libgfortran5:s390x.
149s Preparing to unpack .../032-libgfortran5_15-20250222-0ubuntu1_s390x.deb ...
149s Unpacking libgfortran5:s390x (15-20250222-0ubuntu1) ...
149s Selecting previously unselected package libgomp1:s390x.
149s Preparing to unpack .../033-libgomp1_15-20250222-0ubuntu1_s390x.deb ...
149s Unpacking libgomp1:s390x (15-20250222-0ubuntu1) ...
149s Selecting previously unselected package libgraphite2-3:s390x.
149s Preparing to unpack .../034-libgraphite2-3_1.3.14-2ubuntu1_s390x.deb ...
149s Unpacking libgraphite2-3:s390x (1.3.14-2ubuntu1) ...
149s Selecting previously unselected package libharfbuzz0b:s390x.
149s Preparing to unpack .../035-libharfbuzz0b_10.2.0-1_s390x.deb ...
149s Unpacking libharfbuzz0b:s390x (10.2.0-1) ...
149s Selecting previously unselected package x11-common.
149s Preparing to unpack .../036-x11-common_1%3a7.7+23ubuntu3_all.deb ...
149s Unpacking x11-common (1:7.7+23ubuntu3) ...
149s Selecting previously unselected package libice6:s390x.
149s Preparing to unpack .../037-libice6_2%3a1.1.1-1_s390x.deb ...
149s Unpacking libice6:s390x (2:1.1.1-1) ...
149s Selecting previously unselected package libkpathsea6:s390x.
149s Preparing to unpack .../038-libkpathsea6_2024.20240313.70630+ds-5build2_s390x.deb ...
149s Unpacking libkpathsea6:s390x (2024.20240313.70630+ds-5build2) ...
149s Selecting previously unselected package liblapack3:s390x.
150s Preparing to unpack .../039-liblapack3_3.12.1-2_s390x.deb ...
150s Unpacking liblapack3:s390x (3.12.1-2) ...
150s Selecting previously unselected package libmpfi0:s390x.
150s Preparing to unpack .../040-libmpfi0_1.5.4+ds-4_s390x.deb ...
150s Unpacking libmpfi0:s390x (1.5.4+ds-4) ...
150s Selecting previously unselected package libthai-data.
150s Preparing to unpack .../041-libthai-data_0.1.29-2build1_all.deb ...
150s Unpacking libthai-data (0.1.29-2build1) ...
150s Selecting previously unselected package libthai0:s390x.
150s Preparing to unpack .../042-libthai0_0.1.29-2build1_s390x.deb ...
150s Unpacking libthai0:s390x (0.1.29-2build1) ...
150s Selecting previously unselected package libpango-1.0-0:s390x.
150s Preparing to unpack .../043-libpango-1.0-0_1.56.1-1_s390x.deb ...
150s Unpacking libpango-1.0-0:s390x (1.56.1-1) ...
150s Selecting previously unselected package libpangoft2-1.0-0:s390x.
150s Preparing to unpack .../044-libpangoft2-1.0-0_1.56.1-1_s390x.deb ...
150s Unpacking libpangoft2-1.0-0:s390x (1.56.1-1) ...
150s Selecting previously unselected package libpangocairo-1.0-0:s390x.
150s Preparing to unpack .../045-libpangocairo-1.0-0_1.56.1-1_s390x.deb ...
150s Unpacking libpangocairo-1.0-0:s390x (1.56.1-1) ...
150s Selecting previously unselected package libpaper2:s390x.
150s Preparing to unpack .../046-libpaper2_2.2.5-0.3_s390x.deb ...
150s Unpacking libpaper2:s390x (2.2.5-0.3) ...
150s Selecting previously unselected package libpaper-utils.
150s Preparing to unpack .../047-libpaper-utils_2.2.5-0.3_s390x.deb ...
150s Unpacking libpaper-utils (2.2.5-0.3) ...
150s Selecting previously unselected package libpotrace0:s390x.
150s Preparing to unpack .../048-libpotrace0_1.16-2build1_s390x.deb ...
150s Unpacking libpotrace0:s390x (1.16-2build1) ...
150s Selecting previously unselected package libptexenc1:s390x.
150s Preparing to unpack .../049-libptexenc1_2024.20240313.70630+ds-5build2_s390x.deb ...
150s Unpacking libptexenc1:s390x (2024.20240313.70630+ds-5build2) ...
150s Selecting previously unselected package libsharpyuv0:s390x.
150s Preparing to unpack .../050-libsharpyuv0_1.5.0-0.1_s390x.deb ...
150s Unpacking libsharpyuv0:s390x (1.5.0-0.1) ...
150s Selecting previously unselected package libsm6:s390x.
150s Preparing to unpack .../051-libsm6_2%3a1.2.4-1_s390x.deb ...
150s Unpacking libsm6:s390x (2:1.2.4-1) ...
150s Selecting previously unselected package libsynctex2:s390x.
150s Preparing to unpack .../052-libsynctex2_2024.20240313.70630+ds-5build2_s390x.deb ...
150s Unpacking libsynctex2:s390x (2024.20240313.70630+ds-5build2) ...
150s Selecting previously unselected package libtcl8.6:s390x.
150s Preparing to unpack .../053-libtcl8.6_8.6.16+dfsg-1_s390x.deb ...
150s Unpacking libtcl8.6:s390x (8.6.16+dfsg-1) ...
150s Selecting previously unselected package libteckit0:s390x.
150s Preparing to unpack .../054-libteckit0_2.5.12+ds1-1_s390x.deb ...
150s Unpacking libteckit0:s390x (2.5.12+ds1-1) ...
150s Selecting previously unselected package libtexlua53-5:s390x.
150s Preparing to unpack .../055-libtexlua53-5_2024.20240313.70630+ds-5build2_s390x.deb ...
150s Unpacking libtexlua53-5:s390x (2024.20240313.70630+ds-5build2) ...
150s Selecting previously unselected package libjbig0:s390x.
150s Preparing to unpack .../056-libjbig0_2.1-6.1ubuntu2_s390x.deb ...
150s Unpacking libjbig0:s390x (2.1-6.1ubuntu2) ...
150s Selecting previously unselected package libwebp7:s390x.
150s Preparing to unpack .../057-libwebp7_1.5.0-0.1_s390x.deb ...
150s Unpacking libwebp7:s390x (1.5.0-0.1) ...
150s Selecting previously unselected package libtiff6:s390x.
150s Preparing to unpack .../058-libtiff6_4.5.1+git230720-4ubuntu4_s390x.deb ...
150s Unpacking libtiff6:s390x (4.5.1+git230720-4ubuntu4) ...
150s Selecting previously unselected package libxft2:s390x.
150s Preparing to unpack .../059-libxft2_2.3.6-1build1_s390x.deb ...
150s Unpacking libxft2:s390x (2.3.6-1build1) ...
150s Selecting previously unselected package libxss1:s390x.
150s Preparing to unpack .../060-libxss1_1%3a1.2.3-1build3_s390x.deb ...
150s Unpacking libxss1:s390x (1:1.2.3-1build3) ...
150s Selecting previously unselected package libtk8.6:s390x.
150s Preparing to unpack .../061-libtk8.6_8.6.16-1_s390x.deb ...
150s Unpacking libtk8.6:s390x (8.6.16-1) ...
150s Selecting previously unselected package libxt6t64:s390x.
150s Preparing to unpack .../062-libxt6t64_1%3a1.2.1-1.2build1_s390x.deb ...
150s Unpacking libxt6t64:s390x (1:1.2.1-1.2build1) ...
150s Selecting previously unselected package libxmu6:s390x.
150s Preparing to unpack .../063-libxmu6_2%3a1.1.3-3build2_s390x.deb ...
150s Unpacking libxmu6:s390x (2:1.1.3-3build2) ...
150s Selecting previously unselected package libxpm4:s390x.
150s Preparing to unpack .../064-libxpm4_1%3a3.5.17-1build2_s390x.deb ...
150s Unpacking libxpm4:s390x (1:3.5.17-1build2) ...
150s Selecting previously unselected package libxaw7:s390x.
150s Preparing to unpack .../065-libxaw7_2%3a1.0.16-1_s390x.deb ...
150s Unpacking libxaw7:s390x (2:1.0.16-1) ...
150s Selecting previously unselected package libxi6:s390x.
150s Preparing to unpack .../066-libxi6_2%3a1.8.2-1_s390x.deb ...
150s Unpacking libxi6:s390x (2:1.8.2-1) ...
150s Selecting previously unselected package libzzip-0-13t64:s390x.
150s Preparing to unpack .../067-libzzip-0-13t64_0.13.78+dfsg.1-0.1_s390x.deb ...
150s Unpacking libzzip-0-13t64:s390x (0.13.78+dfsg.1-0.1) ...
150s Selecting previously unselected package zip.
150s Preparing to unpack .../068-zip_3.0-14ubuntu2_s390x.deb ...
150s Unpacking zip (3.0-14ubuntu2) ...
150s Selecting previously unselected package unzip.
150s Preparing to unpack .../069-unzip_6.0-28ubuntu6_s390x.deb ...
150s Unpacking unzip (6.0-28ubuntu6) ...
150s Selecting previously unselected package xdg-utils.
150s Preparing to unpack .../070-xdg-utils_1.2.1-2ubuntu1_all.deb ...
150s Unpacking xdg-utils (1.2.1-2ubuntu1) ...
150s Selecting previously unselected package r-base-core.
150s Preparing to unpack .../071-r-base-core_4.4.3-1_s390x.deb ...
150s Unpacking r-base-core (4.4.3-1) ...
150s Selecting previously unselected package r-cran-littler.
150s Preparing to unpack .../072-r-cran-littler_0.3.20-2_s390x.deb ...
150s Unpacking r-cran-littler (0.3.20-2) ...
150s Selecting previously unselected package littler.
150s Preparing to unpack .../073-littler_0.3.20-2_all.deb ...
150s Unpacking littler (0.3.20-2) ...
150s Selecting previously unselected package r-cran-cli.
150s Preparing to unpack .../074-r-cran-cli_3.6.4-1_s390x.deb ...
150s Unpacking r-cran-cli (3.6.4-1) ...
150s Selecting previously unselected package r-cran-glue.
150s Preparing to unpack .../075-r-cran-glue_1.8.0-1_s390x.deb ...
150s Unpacking r-cran-glue (1.8.0-1) ...
150s Selecting previously unselected package r-cran-rlang.
150s Preparing to unpack .../076-r-cran-rlang_1.1.5-1_s390x.deb ...
150s Unpacking r-cran-rlang (1.1.5-1) ...
150s Selecting previously unselected package r-cran-lifecycle.
150s Preparing to unpack .../077-r-cran-lifecycle_1.0.4+dfsg-1_all.deb ...
150s Unpacking r-cran-lifecycle (1.0.4+dfsg-1) ...
150s Selecting previously unselected package r-cran-gtable.
150s Preparing to unpack .../078-r-cran-gtable_0.3.6+dfsg-1_all.deb ...
150s Unpacking r-cran-gtable (0.3.6+dfsg-1) ...
150s Selecting previously unselected package r-cran-isoband.
150s Preparing to unpack .../079-r-cran-isoband_0.2.7-1_s390x.deb ...
150s Unpacking r-cran-isoband (0.2.7-1) ...
150s Selecting previously unselected package r-cran-mass.
150s Preparing to unpack .../080-r-cran-mass_7.3-64-1_s390x.deb ...
150s Unpacking r-cran-mass (7.3-64-1) ...
150s Selecting previously unselected package r-cran-lattice.
150s Preparing to unpack .../081-r-cran-lattice_0.22-6-1_s390x.deb ...
150s Unpacking r-cran-lattice (0.22-6-1) ...
150s Selecting previously unselected package r-cran-nlme.
150s Preparing to unpack .../082-r-cran-nlme_3.1.167-1_s390x.deb ...
150s Unpacking r-cran-nlme (3.1.167-1) ...
150s Selecting previously unselected package r-cran-matrix.
150s Preparing to unpack .../083-r-cran-matrix_1.7-2-1_s390x.deb ...
150s Unpacking r-cran-matrix (1.7-2-1) ...
150s Selecting previously unselected package r-cran-mgcv.
150s Preparing to unpack .../084-r-cran-mgcv_1.9-1-1_s390x.deb ...
150s Unpacking r-cran-mgcv (1.9-1-1) ...
150s Selecting previously unselected package r-cran-farver.
150s Preparing to unpack .../085-r-cran-farver_2.1.2-1_s390x.deb ...
150s Unpacking r-cran-farver (2.1.2-1) ...
150s Selecting previously unselected package r-cran-labeling.
150s Preparing to unpack .../086-r-cran-labeling_0.4.3-1_all.deb ...
150s Unpacking r-cran-labeling (0.4.3-1) ...
150s Selecting previously unselected package r-cran-colorspace.
150s Preparing to unpack .../087-r-cran-colorspace_2.1-1+dfsg-1_s390x.deb ...
150s Unpacking r-cran-colorspace (2.1-1+dfsg-1) ...
150s Selecting previously unselected package r-cran-munsell.
150s Preparing to unpack .../088-r-cran-munsell_0.5.1-1_all.deb ...
150s Unpacking r-cran-munsell (0.5.1-1) ...
151s Selecting previously unselected package r-cran-r6.
151s Preparing to unpack .../089-r-cran-r6_2.6.1-1_all.deb ...
151s Unpacking r-cran-r6 (2.6.1-1) ...
151s Selecting previously unselected package r-cran-rcolorbrewer.
151s Preparing to unpack .../090-r-cran-rcolorbrewer_1.1-3-1build1_all.deb ...
151s Unpacking r-cran-rcolorbrewer (1.1-3-1build1) ...
151s Selecting previously unselected package r-cran-viridislite.
151s Preparing to unpack .../091-r-cran-viridislite_0.4.2-2_all.deb ...
151s Unpacking r-cran-viridislite (0.4.2-2) ...
151s Selecting previously unselected package r-cran-scales.
151s Preparing to unpack .../092-r-cran-scales_1.3.0-1_all.deb ...
151s Unpacking r-cran-scales (1.3.0-1) ...
151s Selecting previously unselected package r-cran-fansi.
151s Preparing to unpack .../093-r-cran-fansi_1.0.5-1_s390x.deb ...
151s Unpacking r-cran-fansi (1.0.5-1) ...
151s Selecting previously unselected package r-cran-magrittr.
151s Preparing to unpack .../094-r-cran-magrittr_2.0.3-1_s390x.deb ...
151s Unpacking r-cran-magrittr (2.0.3-1) ...
151s Selecting previously unselected package r-cran-utf8.
151s Preparing to unpack .../095-r-cran-utf8_1.2.4-1_s390x.deb ...
151s Unpacking r-cran-utf8 (1.2.4-1) ...
151s Selecting previously unselected package r-cran-vctrs.
151s Preparing to unpack .../096-r-cran-vctrs_0.6.5-1_s390x.deb ...
151s Unpacking r-cran-vctrs (0.6.5-1) ...
151s Selecting previously unselected package r-cran-pillar.
151s Preparing to unpack .../097-r-cran-pillar_1.10.1+dfsg-1_all.deb ...
151s Unpacking r-cran-pillar (1.10.1+dfsg-1) ...
151s Selecting previously unselected package r-cran-pkgconfig.
151s Preparing to unpack .../098-r-cran-pkgconfig_2.0.3-2build1_all.deb ...
151s Unpacking r-cran-pkgconfig (2.0.3-2build1) ...
151s Selecting previously unselected package r-cran-tibble.
151s Preparing to unpack .../099-r-cran-tibble_3.2.1+dfsg-3_s390x.deb ...
151s Unpacking r-cran-tibble (3.2.1+dfsg-3) ...
151s Selecting previously unselected package r-cran-withr.
151s Preparing to unpack .../100-r-cran-withr_3.0.2+dfsg-1_all.deb ...
151s Unpacking r-cran-withr (3.0.2+dfsg-1) ...
151s Selecting previously unselected package r-cran-ggplot2.
151s Preparing to unpack .../101-r-cran-ggplot2_3.5.1+dfsg-1_all.deb ...
151s Unpacking r-cran-ggplot2 (3.5.1+dfsg-1) ...
151s Selecting previously unselected package r-cran-gridextra.
151s Preparing to unpack .../102-r-cran-gridextra_2.3-3build1_all.deb ...
151s Unpacking r-cran-gridextra (2.3-3build1) ...
151s Selecting previously unselected package r-cran-pkgkitten.
151s Preparing to unpack .../103-r-cran-pkgkitten_0.2.4-1_all.deb ...
151s Unpacking r-cran-pkgkitten (0.2.4-1) ...
151s Selecting previously unselected package r-cran-rcpp.
151s Preparing to unpack .../104-r-cran-rcpp_1.0.14-1_s390x.deb ...
151s Unpacking r-cran-rcpp (1.0.14-1) ...
151s Selecting previously unselected package r-cran-plyr.
151s Preparing to unpack .../105-r-cran-plyr_1.8.9-1_s390x.deb ...
151s Unpacking r-cran-plyr (1.8.9-1) ...
151s Selecting previously unselected package r-cran-reshape.
151s Preparing to unpack .../106-r-cran-reshape_0.8.9-1_all.deb ...
151s Unpacking r-cran-reshape (0.8.9-1) ...
151s Selecting previously unselected package tex-common.
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151s Unpacking texlive-binaries (2024.20240313.70630+ds-5build2) ...
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152s Selecting previously unselected package texlive-latex-base.
152s Preparing to unpack .../111-texlive-latex-base_2024.20250114-1_all.deb ...
152s Unpacking texlive-latex-base (2024.20250114-1) ...
152s Selecting previously unselected package nanook.
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152s Unpacking nanook (1.33+dfsg-6) ...
152s Selecting previously unselected package nanook-examples.
152s Preparing to unpack .../113-nanook-examples_1.33+dfsg-6_all.deb ...
153s Unpacking nanook-examples (1.33+dfsg-6) ...
153s Setting up libgraphite2-3:s390x (1.3.14-2ubuntu1) ...
153s Setting up liblcms2-2:s390x (2.16-2) ...
153s Setting up libpixman-1-0:s390x (0.44.0-3) ...
153s Setting up libsharpyuv0:s390x (1.5.0-0.1) ...
153s Setting up nanook-examples (1.33+dfsg-6) ...
153s Setting up libxpm4:s390x (1:3.5.17-1build2) ...
153s Setting up libxi6:s390x (2:1.8.2-1) ...
153s Setting up java-common (0.76) ...
153s Setting up libxrender1:s390x (1:0.9.10-1.1build1) ...
153s Setting up libdatrie1:s390x (0.2.13-3build1) ...
153s Setting up libxcb-render0:s390x (1.17.0-2) ...
153s Setting up unzip (6.0-28ubuntu6) ...
153s Setting up x11-common (1:7.7+23ubuntu3) ...
153s Setting up libdeflate0:s390x (1.23-1) ...
153s Setting up libxcb-shm0:s390x (1.17.0-2) ...
153s Setting up libgomp1:s390x (15-20250222-0ubuntu1) ...
153s Setting up libjbig0:s390x (2.1-6.1ubuntu2) ...
153s Setting up libaec0:s390x (1.1.3-1) ...
153s Setting up last-align (1609-1) ...
153s Setting up tex-common (6.19) ...
153s update-language: texlive-base not installed and configured, doing nothing!
153s Setting up zip (3.0-14ubuntu2) ...
153s Setting up libblas3:s390x (3.12.1-2) ...
153s update-alternatives: using /usr/lib/s390x-linux-gnu/blas/libblas.so.3 to provide /usr/lib/s390x-linux-gnu/libblas.so.3 (libblas.so.3-s390x-linux-gnu) in auto mode
153s Setting up libzzip-0-13t64:s390x (0.13.78+dfsg.1-0.1) ...
153s Setting up libfreetype6:s390x (2.13.3+dfsg-1) ...
153s Setting up libteckit0:s390x (2.5.12+ds1-1) ...
153s Setting up libapache-pom-java (33-2) ...
153s Setting up t1utils (1.41-4build3) ...
153s Setting up libtexlua53-5:s390x (2024.20240313.70630+ds-5build2) ...
153s Setting up fonts-dejavu-mono (2.37-8) ...
153s Setting up libtcl8.6:s390x (8.6.16+dfsg-1) ...
153s Setting up libmpfi0:s390x (1.5.4+ds-4) ...
153s Setting up fonts-dejavu-core (2.37-8) ...
153s Setting up libpcsclite1:s390x (2.3.1-1) ...
153s Setting up libjpeg-turbo8:s390x (2.1.5-3ubuntu2) ...
153s Setting up libkpathsea6:s390x (2024.20240313.70630+ds-5build2) ...
153s Setting up libgfortran5:s390x (15-20250222-0ubuntu1) ...
153s Setting up libwebp7:s390x (1.5.0-0.1) ...
153s Setting up fonts-lmodern (2.005-1) ...
153s Setting up libharfbuzz0b:s390x (10.2.0-1) ...
153s Setting up libthai-data (0.1.29-2build1) ...
153s Setting up libxss1:s390x (1:1.2.3-1build3) ...
153s Setting up libpaper2:s390x (2.2.5-0.3) ...
153s Setting up ca-certificates-java (20240118) ...
153s No JRE found. Skipping Java certificates setup.
153s Setting up xdg-utils (1.2.1-2ubuntu1) ...
153s update-alternatives: using /usr/bin/xdg-open to provide /usr/bin/open (open) in auto mode
153s Setting up libsz2:s390x (1.1.3-1) ...
153s Setting up libsynctex2:s390x (2024.20240313.70630+ds-5build2) ...
153s Setting up libpotrace0:s390x (1.16-2build1) ...
153s Setting up libjpeg8:s390x (8c-2ubuntu11) ...
153s Setting up libice6:s390x (2:1.1.1-1) ...
153s Setting up liblapack3:s390x (3.12.1-2) ...
153s update-alternatives: using /usr/lib/s390x-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/s390x-linux-gnu/liblapack.so.3 (liblapack.so.3-s390x-linux-gnu) in auto mode
153s Setting up openjdk-21-jre-headless:s390x (21.0.6+7-1) ...
153s update-alternatives: using /usr/lib/jvm/java-21-openjdk-s390x/bin/java to provide /usr/bin/java (java) in auto mode
153s update-alternatives: using /usr/lib/jvm/java-21-openjdk-s390x/bin/jpackage to provide /usr/bin/jpackage (jpackage) in auto mode
153s update-alternatives: using /usr/lib/jvm/java-21-openjdk-s390x/bin/keytool to provide /usr/bin/keytool (keytool) in auto mode
153s update-alternatives: using /usr/lib/jvm/java-21-openjdk-s390x/bin/rmiregistry to provide /usr/bin/rmiregistry (rmiregistry) in auto mode
153s update-alternatives: using /usr/lib/jvm/java-21-openjdk-s390x/lib/jexec to provide /usr/bin/jexec (jexec) in auto mode
153s Setting up fontconfig-config (2.15.0-2ubuntu1) ...
153s Setting up libcommons-parent-java (56-1) ...
153s Setting up libpaper-utils (2.2.5-0.3) ...
153s Setting up libthai0:s390x (0.1.29-2build1) ...
153s Setting up libptexenc1:s390x (2024.20240313.70630+ds-5build2) ...
153s Setting up libhdf5-310:s390x (1.14.5+repack-3) ...
153s Setting up libtiff6:s390x (4.5.1+git230720-4ubuntu4) ...
153s Setting up libfontconfig1:s390x (2.15.0-2ubuntu1) ...
153s Setting up libsm6:s390x (2:1.2.4-1) ...
153s Setting up libhdf5-hl-310:s390x (1.14.5+repack-3) ...
153s Setting up fontconfig (2.15.0-2ubuntu1) ...
155s Regenerating fonts cache... done.
155s Setting up libxft2:s390x (2.3.6-1build1) ...
155s Setting up libcommons-io-java (2.18.0-1) ...
155s Setting up libtk8.6:s390x (8.6.16-1) ...
155s Setting up libpango-1.0-0:s390x (1.56.1-1) ...
155s Setting up libcairo2:s390x (1.18.2-2) ...
155s Setting up hdf5-tools (1.14.5+repack-3) ...
155s Setting up libxt6t64:s390x (1:1.2.1-1.2build1) ...
155s Setting up libpangoft2-1.0-0:s390x (1.56.1-1) ...
155s Setting up libpangocairo-1.0-0:s390x (1.56.1-1) ...
155s Setting up libxmu6:s390x (2:1.1.3-3build2) ...
155s Setting up libxaw7:s390x (2:1.0.16-1) ...
155s Setting up r-base-core (4.4.3-1) ...
155s Creating config file /etc/R/Renviron with new version
155s Setting up r-cran-labeling (0.4.3-1) ...
155s Setting up r-cran-lattice (0.22-6-1) ...
155s Setting up r-cran-nlme (3.1.167-1) ...
155s Setting up r-cran-farver (2.1.2-1) ...
155s Setting up r-cran-viridislite (0.4.2-2) ...
155s Setting up texlive-binaries (2024.20240313.70630+ds-5build2) ...
155s update-alternatives: using /usr/bin/xdvi-xaw to provide /usr/bin/xdvi.bin (xdvi.bin) in auto mode
155s update-alternatives: using /usr/bin/bibtex.original to provide /usr/bin/bibtex (bibtex) in auto mode
155s Setting up r-cran-r6 (2.6.1-1) ...
155s Setting up r-cran-pkgkitten (0.2.4-1) ...
155s Setting up texlive-base (2024.20250114-1) ...
156s tl-paper: setting paper size for dvips to a4: /var/lib/texmf/dvips/config/config-paper.ps
156s tl-paper: setting paper size for dvipdfmx to a4: /var/lib/texmf/dvipdfmx/dvipdfmx-paper.cfg
156s tl-paper: setting paper size for xdvi to a4: /var/lib/texmf/xdvi/XDvi-paper
156s tl-paper: setting paper size for pdftex to a4: /var/lib/texmf/tex/generic/tex-ini-files/pdftexconfig.tex
156s Setting up r-cran-magrittr (2.0.3-1) ...
156s Setting up r-cran-littler (0.3.20-2) ...
156s Setting up r-cran-rcpp (1.0.14-1) ...
156s Setting up r-cran-rlang (1.1.5-1) ...
156s Setting up littler (0.3.20-2) ...
156s Setting up r-cran-withr (3.0.2+dfsg-1) ...
156s Setting up r-cran-fansi (1.0.5-1) ...
156s Setting up r-cran-mass (7.3-64-1) ...
156s Setting up r-cran-glue (1.8.0-1) ...
156s Setting up r-cran-cli (3.6.4-1) ...
156s Setting up r-cran-lifecycle (1.0.4+dfsg-1) ...
156s Setting up r-cran-pkgconfig (2.0.3-2build1) ...
156s Setting up r-cran-utf8 (1.2.4-1) ...
156s Setting up r-cran-colorspace (2.1-1+dfsg-1) ...
156s Setting up texlive-latex-base (2024.20250114-1) ...
156s Setting up r-cran-plyr (1.8.9-1) ...
156s Setting up r-cran-rcolorbrewer (1.1-3-1build1) ...
156s Setting up r-cran-isoband (0.2.7-1) ...
156s Setting up r-cran-gtable (0.3.6+dfsg-1) ...
156s Setting up r-cran-matrix (1.7-2-1) ...
156s Setting up r-cran-mgcv (1.9-1-1) ...
156s Setting up r-cran-vctrs (0.6.5-1) ...
156s Setting up r-cran-pillar (1.10.1+dfsg-1) ...
156s Setting up r-cran-reshape (0.8.9-1) ...
156s Setting up r-cran-munsell (0.5.1-1) ...
156s Setting up r-cran-tibble (3.2.1+dfsg-3) ...
156s Setting up r-cran-gridextra (2.3-3build1) ...
156s Setting up r-cran-scales (1.3.0-1) ...
156s Setting up r-cran-ggplot2 (3.5.1+dfsg-1) ...
156s Processing triggers for libc-bin (2.41-1ubuntu1) ...
156s Processing triggers for man-db (2.13.0-1) ...
157s Processing triggers for install-info (7.1.1-1) ...
157s Processing triggers for ca-certificates-java (20240118) ...
158s Adding debian:ACCVRAIZ1.pem
158s Adding debian:AC_RAIZ_FNMT-RCM.pem
158s Adding debian:AC_RAIZ_FNMT-RCM_SERVIDORES_SEGUROS.pem
158s Adding debian:ANF_Secure_Server_Root_CA.pem
158s Adding debian:Actalis_Authentication_Root_CA.pem
158s Adding debian:AffirmTrust_Commercial.pem
158s Adding debian:AffirmTrust_Networking.pem
158s Adding debian:AffirmTrust_Premium.pem
158s Adding debian:AffirmTrust_Premium_ECC.pem
158s Adding debian:Amazon_Root_CA_1.pem
158s Adding debian:Amazon_Root_CA_2.pem
158s Adding debian:Amazon_Root_CA_3.pem
158s Adding debian:Amazon_Root_CA_4.pem
158s Adding debian:Atos_TrustedRoot_2011.pem
158s Adding debian:Atos_TrustedRoot_Root_CA_ECC_TLS_2021.pem
158s Adding debian:Atos_TrustedRoot_Root_CA_RSA_TLS_2021.pem
158s Adding debian:Autoridad_de_Certificacion_Firmaprofesional_CIF_A62634068.pem
158s Adding debian:BJCA_Global_Root_CA1.pem
158s Adding debian:BJCA_Global_Root_CA2.pem
158s Adding debian:Baltimore_CyberTrust_Root.pem
158s Adding debian:Buypass_Class_2_Root_CA.pem
158s Adding debian:Buypass_Class_3_Root_CA.pem
158s Adding debian:CA_Disig_Root_R2.pem
158s Adding debian:CFCA_EV_ROOT.pem
158s Adding debian:COMODO_Certification_Authority.pem
158s Adding debian:COMODO_ECC_Certification_Authority.pem
158s Adding debian:COMODO_RSA_Certification_Authority.pem
158s Adding debian:Certainly_Root_E1.pem
158s Adding debian:Certainly_Root_R1.pem
158s Adding debian:Certigna.pem
158s Adding debian:Certigna_Root_CA.pem
158s Adding debian:Certum_EC-384_CA.pem
158s Adding debian:Certum_Trusted_Network_CA.pem
158s Adding debian:Certum_Trusted_Network_CA_2.pem
158s Adding debian:Certum_Trusted_Root_CA.pem
158s Adding debian:CommScope_Public_Trust_ECC_Root-01.pem
158s Adding debian:CommScope_Public_Trust_ECC_Root-02.pem
158s Adding debian:CommScope_Public_Trust_RSA_Root-01.pem
158s Adding debian:CommScope_Public_Trust_RSA_Root-02.pem
158s Adding debian:Comodo_AAA_Services_root.pem
158s Adding debian:D-TRUST_BR_Root_CA_1_2020.pem
158s Adding debian:D-TRUST_EV_Root_CA_1_2020.pem
158s Adding debian:D-TRUST_Root_Class_3_CA_2_2009.pem
158s Adding debian:D-TRUST_Root_Class_3_CA_2_EV_2009.pem
158s Adding debian:DigiCert_Assured_ID_Root_CA.pem
158s Adding debian:DigiCert_Assured_ID_Root_G2.pem
158s Adding debian:DigiCert_Assured_ID_Root_G3.pem
158s Adding debian:DigiCert_Global_Root_CA.pem
158s Adding debian:DigiCert_Global_Root_G2.pem
158s Adding debian:DigiCert_Global_Root_G3.pem
158s Adding debian:DigiCert_High_Assurance_EV_Root_CA.pem
158s Adding debian:DigiCert_TLS_ECC_P384_Root_G5.pem
158s Adding debian:DigiCert_TLS_RSA4096_Root_G5.pem
158s Adding debian:DigiCert_Trusted_Root_G4.pem
158s Adding debian:Entrust.net_Premium_2048_Secure_Server_CA.pem
158s Adding debian:Entrust_Root_Certification_Authority.pem
158s Adding debian:Entrust_Root_Certification_Authority_-_EC1.pem
158s Adding debian:Entrust_Root_Certification_Authority_-_G2.pem
158s Adding debian:Entrust_Root_Certification_Authority_-_G4.pem
158s Adding debian:FIRMAPROFESIONAL_CA_ROOT-A_WEB.pem
158s Adding debian:GDCA_TrustAUTH_R5_ROOT.pem
158s Adding debian:GLOBALTRUST_2020.pem
158s Adding debian:GTS_Root_R1.pem
158s Adding debian:GTS_Root_R2.pem
158s Adding debian:GTS_Root_R3.pem
158s Adding debian:GTS_Root_R4.pem
158s Adding debian:GlobalSign_ECC_Root_CA_-_R4.pem
158s Adding debian:GlobalSign_ECC_Root_CA_-_R5.pem
158s Adding debian:GlobalSign_Root_CA.pem
158s Adding debian:GlobalSign_Root_CA_-_R3.pem
158s Adding debian:GlobalSign_Root_CA_-_R6.pem
158s Adding debian:GlobalSign_Root_E46.pem
158s Adding debian:GlobalSign_Root_R46.pem
158s Adding debian:Go_Daddy_Class_2_CA.pem
158s Adding debian:Go_Daddy_Root_Certificate_Authority_-_G2.pem
158s Adding debian:HARICA_TLS_ECC_Root_CA_2021.pem
158s Adding debian:HARICA_TLS_RSA_Root_CA_2021.pem
158s Adding debian:Hellenic_Academic_and_Research_Institutions_ECC_RootCA_2015.pem
158s Adding debian:Hellenic_Academic_and_Research_Institutions_RootCA_2015.pem
158s Adding debian:HiPKI_Root_CA_-_G1.pem
158s Adding debian:Hongkong_Post_Root_CA_3.pem
158s Adding debian:ISRG_Root_X1.pem
158s Adding debian:ISRG_Root_X2.pem
158s Adding debian:IdenTrust_Commercial_Root_CA_1.pem
158s Adding debian:IdenTrust_Public_Sector_Root_CA_1.pem
158s Adding debian:Izenpe.com.pem
158s Adding debian:Microsec_e-Szigno_Root_CA_2009.pem
158s Adding debian:Microsoft_ECC_Root_Certificate_Authority_2017.pem
158s Adding debian:Microsoft_RSA_Root_Certificate_Authority_2017.pem
158s Adding debian:NAVER_Global_Root_Certification_Authority.pem
158s Adding debian:NetLock_Arany_=Class_Gold=_Főtanúsítvány.pem
158s Adding debian:OISTE_WISeKey_Global_Root_GB_CA.pem
158s Adding debian:OISTE_WISeKey_Global_Root_GC_CA.pem
158s Adding debian:QuoVadis_Root_CA_1_G3.pem
158s Adding debian:QuoVadis_Root_CA_2.pem
158s Adding debian:QuoVadis_Root_CA_2_G3.pem
158s Adding debian:QuoVadis_Root_CA_3.pem
158s Adding debian:QuoVadis_Root_CA_3_G3.pem
158s Adding debian:SSL.com_EV_Root_Certification_Authority_ECC.pem
158s Adding debian:SSL.com_EV_Root_Certification_Authority_RSA_R2.pem
158s Adding debian:SSL.com_Root_Certification_Authority_ECC.pem
158s Adding debian:SSL.com_Root_Certification_Authority_RSA.pem
158s Adding debian:SSL.com_TLS_ECC_Root_CA_2022.pem
158s Adding debian:SSL.com_TLS_RSA_Root_CA_2022.pem
158s Adding debian:SZAFIR_ROOT_CA2.pem
158s Adding debian:Sectigo_Public_Server_Authentication_Root_E46.pem
158s Adding debian:Sectigo_Public_Server_Authentication_Root_R46.pem
158s Adding debian:SecureSign_RootCA11.pem
158s Adding debian:SecureSign_Root_CA12.pem
158s Adding debian:SecureSign_Root_CA14.pem
158s Adding debian:SecureSign_Root_CA15.pem
158s Adding debian:SecureTrust_CA.pem
158s Adding debian:Secure_Global_CA.pem
158s Adding debian:Security_Communication_ECC_RootCA1.pem
158s Adding debian:Security_Communication_RootCA2.pem
158s Adding debian:Security_Communication_RootCA3.pem
158s Adding debian:Starfield_Class_2_CA.pem
158s Adding debian:Starfield_Root_Certificate_Authority_-_G2.pem
158s Adding debian:Starfield_Services_Root_Certificate_Authority_-_G2.pem
158s Adding debian:SwissSign_Gold_CA_-_G2.pem
158s Adding debian:SwissSign_Silver_CA_-_G2.pem
158s Adding debian:T-TeleSec_GlobalRoot_Class_2.pem
158s Adding debian:T-TeleSec_GlobalRoot_Class_3.pem
158s Adding debian:TUBITAK_Kamu_SM_SSL_Kok_Sertifikasi_-_Surum_1.pem
158s Adding debian:TWCA_CYBER_Root_CA.pem
158s Adding debian:TWCA_Global_Root_CA.pem
158s Adding debian:TWCA_Root_Certification_Authority.pem
158s Adding debian:Telekom_Security_TLS_ECC_Root_2020.pem
158s Adding debian:Telekom_Security_TLS_RSA_Root_2023.pem
158s Adding debian:TeliaSonera_Root_CA_v1.pem
158s Adding debian:Telia_Root_CA_v2.pem
158s Adding debian:TrustAsia_Global_Root_CA_G3.pem
158s Adding debian:TrustAsia_Global_Root_CA_G4.pem
158s Adding debian:Trustwave_Global_Certification_Authority.pem
158s Adding debian:Trustwave_Global_ECC_P256_Certification_Authority.pem
158s Adding debian:Trustwave_Global_ECC_P384_Certification_Authority.pem
158s Adding debian:TunTrust_Root_CA.pem
158s Adding debian:UCA_Extended_Validation_Root.pem
158s Adding debian:UCA_Global_G2_Root.pem
158s Adding debian:USERTrust_ECC_Certification_Authority.pem
158s Adding debian:USERTrust_RSA_Certification_Authority.pem
158s Adding debian:XRamp_Global_CA_Root.pem
158s Adding debian:certSIGN_ROOT_CA.pem
158s Adding debian:certSIGN_Root_CA_G2.pem
158s Adding debian:e-Szigno_Root_CA_2017.pem
158s Adding debian:ePKI_Root_Certification_Authority.pem
158s Adding debian:emSign_ECC_Root_CA_-_C3.pem
158s Adding debian:emSign_ECC_Root_CA_-_G3.pem
158s Adding debian:emSign_Root_CA_-_C1.pem
158s Adding debian:emSign_Root_CA_-_G1.pem
158s Adding debian:vTrus_ECC_Root_CA.pem
158s Adding debian:vTrus_Root_CA.pem
158s done.
158s Setting up default-jre-headless (2:1.21-76) ...
158s Setting up nanook (1.33+dfsg-6) ...
158s Processing triggers for tex-common (6.19) ...
158s Running updmap-sys. This may take some time... done.
158s Running mktexlsr /var/lib/texmf ... done.
158s Building format(s) --all.
197s 	This may take some time... done.
198s autopkgtest [10:51:40]: test run-unit-test: [-----------------------
207s 
207s NanoOK v1.33
207s 
207s Comments/bugs to: richard.leggett@earlham.ac.uk
207s Follow NanoOK on twitter: @NanoOK_Software
207s 
207s Scripts dir: /usr/share/nanook/bin
207s 
207s Checking dependencies
207s *** ERROR: Couldn't find Rscript - is R installed? ***
207s pdfTeX 3.141592653-2.6-1.40.26 (TeX Live 2025/dev/Debian)
207s h5dump: Version 1.14.5
207s 
207s Making directory /tmp/autopkgtest.JdPp4c/autopkgtest_tmp/data/nanook_ecoli_500/N79596_dh10b_8kb_11022015/fasta
207s Checking FAST5 directory structure...
207s   Using pass/fail dirs: yes
207s       Using batch dirs: no
207s         Using barcodes: no
207s 
210s 
Processing [                                                  ] 0/1
Processing [==================================================] 1/1
Processing [==================================================] 1/1
Processing [==================================================] 1/1
Processing [==================================================] 1/1
Processing [==================================================] 1/1
Processing [==================================================] 1/1
210s 
210s DONE
210s 
210s NanoOK v1.33
210s 
210s Comments/bugs to: richard.leggett@earlham.ac.uk
210s Follow NanoOK on twitter: @NanoOK_Software
210s 
210s Scripts dir: /usr/share/nanook/bin
210s 
210s Checking dependencies
210s *** ERROR: Couldn't find Rscript - is R installed? ***
210s pdfTeX 3.141592653-2.6-1.40.26 (TeX Live 2025/dev/Debian)
210s h5dump: Version 1.14.5
210s 
210s Making directory /tmp/autopkgtest.JdPp4c/autopkgtest_tmp/data/nanook_ecoli_500/N79596_dh10b_8kb_11022015/last
210s Making directory /tmp/autopkgtest.JdPp4c/autopkgtest_tmp/data/nanook_ecoli_500/N79596_dh10b_8kb_11022015/logs/last
210s Checking FASTA/Q directory structure...
210s   Using pass/fail dirs: yes
210s       Using batch dirs: no
210s         Using barcodes: no
210s 
213s 
Processing [                                                  ] 0/3
Processing [================                                  ] 1/3
Processing [==================================================] 3/3
Processing [==================================================] 3/3
Processing [==================================================] 3/3
Processing [==================================================] 3/3
Processing [==================================================] 3/3
213s 
213s DONE
213s 
213s NanoOK v1.33
213s 
213s Comments/bugs to: richard.leggett@earlham.ac.uk
213s Follow NanoOK on twitter: @NanoOK_Software
213s 
213s Scripts dir: /usr/share/nanook/bin
213s 
213s Checking dependencies
213s *** ERROR: Couldn't find Rscript - is R installed? ***
213s pdfTeX 3.141592653-2.6-1.40.26 (TeX Live 2025/dev/Debian)
213s h5dump: Version 1.14.5
213s 
213s Checking FASTA/Q directory structure...
213s   Using pass/fail dirs: yes
213s       Using batch dirs: no
213s         Using barcodes: no
213s 
213s Using .sizes file ecoli_dh10b_cs.fasta.sizes
213s Note: if you have changed the reference file, you need to delete the .sizes file and re-run.
213s 
213s Reading reference sizes and making directories
213s 	Escherichia_coli	4686137
213s 	Control_sequence	3560
213s 
213s Calculating reference GC
213s 	Escherichia_coli
213s 	Control_sequence
213s 
213s Parsing Template
213s 
[                                                  ] 0/1
[==================================================] 1/1
213s 
213s Error: unable to find any Template alignments to process.
213s Common reasons for this:
213s 1. Failure to index the reference with the alignment tool, resulting in alignment files of 0 bytes
213s 2. Wrong reference specified to the align stage, resulting in no alignments
213s 3. When indexing with LAST, the output prefix needs to be the same as the reference FASTA file, minus the .fasta extension
213s    e.g. lastdb -Q 0 referencename referencename.fasta
213s 
214s autopkgtest [10:51:56]: test run-unit-test: -----------------------]
214s run-unit-test        FAIL non-zero exit status 1
214s autopkgtest [10:51:56]: test run-unit-test:  - - - - - - - - - - results - - - - - - - - - -
215s autopkgtest [10:51:57]: @@@@@@@@@@@@@@@@@@@@ summary
215s run-unit-test        FAIL non-zero exit status 1
234s nova [W] Using flock in prodstack6-s390x
234s flock: timeout while waiting to get lock
234s Creating nova instance adt-plucky-s390x-nanook-20250313-104822-juju-7f2275-prod-proposed-migration-environment-2-6b82b553-6e3c-49f5-b33b-fef7478e820b from image adt/ubuntu-plucky-s390x-server-20250313.img (UUID 54e7e81b-c545-49a7-82a9-0db67474751a)...
234s nova [W] Timed out waiting for 8e91431c-2fcd-47b1-91de-0e9941bcfc8c to get deleted.