0s autopkgtest [11:47:19]: starting date and time: 2025-02-19 11:47:19+0000
  0s autopkgtest [11:47:19]: git checkout: 325255d2 Merge branch 'pin-any-arch' into 'ubuntu/production'
  0s autopkgtest [11:47:19]: host juju-7f2275-prod-proposed-migration-environment-20; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.on8en7kz/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:last-align --apt-upgrade nanook --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=last-align/1609-1 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest-s390x --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-20@bos03-s390x-14.secgroup --name adt-plucky-s390x-nanook-20250219-114719-juju-7f2275-prod-proposed-migration-environment-20-05a8a3dc-31f7-405a-87e3-d935fa35fad4 --image adt/ubuntu-plucky-s390x-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-20 --net-id=net_prod-proposed-migration-s390x -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,keyserver.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com,radosgw.ps5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/
 81s autopkgtest [11:48:40]: testbed dpkg architecture: s390x
 81s autopkgtest [11:48:40]: testbed apt version: 2.9.30
 81s autopkgtest [11:48:40]: @@@@@@@@@@@@@@@@@@@@ test bed setup
 81s autopkgtest [11:48:40]: testbed release detected to be: None
 82s autopkgtest [11:48:41]: updating testbed package index (apt update)
 82s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease [110 kB]
 83s Hit:2 http://ftpmaster.internal/ubuntu plucky InRelease
 83s Hit:3 http://ftpmaster.internal/ubuntu plucky-updates InRelease
 83s Hit:4 http://ftpmaster.internal/ubuntu plucky-security InRelease
 83s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/universe Sources [750 kB]
 83s Get:6 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse Sources [13.9 kB]
 83s Get:7 http://ftpmaster.internal/ubuntu plucky-proposed/main Sources [76.1 kB]
 83s Get:8 http://ftpmaster.internal/ubuntu plucky-proposed/restricted Sources [3120 B]
 83s Get:9 http://ftpmaster.internal/ubuntu plucky-proposed/main s390x Packages [95.1 kB]
 83s Get:10 http://ftpmaster.internal/ubuntu plucky-proposed/restricted s390x Packages [760 B]
 83s Get:11 http://ftpmaster.internal/ubuntu plucky-proposed/universe s390x Packages [646 kB]
 83s Get:12 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse s390x Packages [4900 B]
 83s Fetched 1700 kB in 1s (1775 kB/s)
 84s Reading package lists...
 85s Reading package lists...
 85s Building dependency tree...
 85s Reading state information...
 85s Calculating upgrade...
 85s The following packages were automatically installed and are no longer required:
 85s   libnsl2 libpython3.12-minimal libpython3.12-stdlib libpython3.12t64
 85s   linux-headers-6.11.0-8 linux-headers-6.11.0-8-generic
 85s   linux-modules-6.11.0-8-generic linux-tools-6.11.0-8
 85s   linux-tools-6.11.0-8-generic
 85s Use 'sudo apt autoremove' to remove them.
 85s The following packages will be upgraded:
 85s   iproute2 liblsof0 libp11-kit0 lsof
 85s 4 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
 85s Need to get 1791 kB of archives.
 85s After this operation, 17.4 kB of additional disk space will be used.
 85s Get:1 http://ftpmaster.internal/ubuntu plucky/main s390x iproute2 s390x 6.13.0-1ubuntu1 [1174 kB]
 86s Get:2 http://ftpmaster.internal/ubuntu plucky/main s390x libp11-kit0 s390x 0.25.5-2ubuntu3 [316 kB]
 86s Get:3 http://ftpmaster.internal/ubuntu plucky/main s390x lsof s390x 4.99.4+dfsg-1 [243 kB]
 86s Get:4 http://ftpmaster.internal/ubuntu plucky/main s390x liblsof0 s390x 4.99.4+dfsg-1 [58.5 kB]
 86s Preconfiguring packages ...
 86s Fetched 1791 kB in 1s (2693 kB/s)
 86s (Reading database ... 
(Reading database ... 5%
(Reading database ... 10%
(Reading database ... 15%
(Reading database ... 20%
(Reading database ... 25%
(Reading database ... 30%
(Reading database ... 35%
(Reading database ... 40%
(Reading database ... 45%
(Reading database ... 50%
(Reading database ... 55%
(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 81030 files and directories currently installed.)
 86s Preparing to unpack .../iproute2_6.13.0-1ubuntu1_s390x.deb ...
 86s Unpacking iproute2 (6.13.0-1ubuntu1) over (6.10.0-2ubuntu1) ...
 86s Preparing to unpack .../libp11-kit0_0.25.5-2ubuntu3_s390x.deb ...
 86s Unpacking libp11-kit0:s390x (0.25.5-2ubuntu3) over (0.25.5-2ubuntu2) ...
 86s Preparing to unpack .../lsof_4.99.4+dfsg-1_s390x.deb ...
 86s Unpacking lsof (4.99.4+dfsg-1) over (4.99.3+dfsg-2) ...
 86s Preparing to unpack .../liblsof0_4.99.4+dfsg-1_s390x.deb ...
 86s Unpacking liblsof0 (4.99.4+dfsg-1) over (4.99.3+dfsg-2) ...
 86s Setting up liblsof0 (4.99.4+dfsg-1) ...
 86s Setting up iproute2 (6.13.0-1ubuntu1) ...
 86s Setting up libp11-kit0:s390x (0.25.5-2ubuntu3) ...
 86s Setting up lsof (4.99.4+dfsg-1) ...
 86s Processing triggers for man-db (2.13.0-1) ...
 87s Processing triggers for libc-bin (2.40-4ubuntu1) ...
 87s Reading package lists...
 87s Building dependency tree...
 87s Reading state information...
 87s The following packages will be REMOVED:
 87s   libnsl2* libpython3.12-minimal* libpython3.12-stdlib* libpython3.12t64*
 87s   linux-headers-6.11.0-8* linux-headers-6.11.0-8-generic*
 87s   linux-modules-6.11.0-8-generic* linux-tools-6.11.0-8*
 87s   linux-tools-6.11.0-8-generic*
 87s 0 upgraded, 0 newly installed, 9 to remove and 0 not upgraded.
 87s After this operation, 167 MB disk space will be freed.
 87s (Reading database ... 
(Reading database ... 5%
(Reading database ... 10%
(Reading database ... 15%
(Reading database ... 20%
(Reading database ... 25%
(Reading database ... 30%
(Reading database ... 35%
(Reading database ... 40%
(Reading database ... 45%
(Reading database ... 50%
(Reading database ... 55%
(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 81031 files and directories currently installed.)
 87s Removing linux-tools-6.11.0-8-generic (6.11.0-8.8) ...
 87s Removing linux-tools-6.11.0-8 (6.11.0-8.8) ...
 87s Removing libpython3.12t64:s390x (3.12.9-1) ...
 87s Removing libpython3.12-stdlib:s390x (3.12.9-1) ...
 87s Removing libnsl2:s390x (1.3.0-3build3) ...
 87s Removing libpython3.12-minimal:s390x (3.12.9-1) ...
 88s Removing linux-headers-6.11.0-8-generic (6.11.0-8.8) ...
 88s Removing linux-headers-6.11.0-8 (6.11.0-8.8) ...
 88s Removing linux-modules-6.11.0-8-generic (6.11.0-8.8) ...
 88s Processing triggers for libc-bin (2.40-4ubuntu1) ...
 88s (Reading database ... 
(Reading database ... 5%
(Reading database ... 10%
(Reading database ... 15%
(Reading database ... 20%
(Reading database ... 25%
(Reading database ... 30%
(Reading database ... 35%
(Reading database ... 40%
(Reading database ... 45%
(Reading database ... 50%
(Reading database ... 55%
(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 55931 files and directories currently installed.)
 88s Purging configuration files for libpython3.12-minimal:s390x (3.12.9-1) ...
 88s Purging configuration files for linux-modules-6.11.0-8-generic (6.11.0-8.8) ...
 89s autopkgtest [11:48:48]: upgrading testbed (apt dist-upgrade and autopurge)
 89s Reading package lists...
 89s Building dependency tree...
 89s Reading state information...
 89s Calculating upgrade...Starting pkgProblemResolver with broken count: 0
 89s Starting 2 pkgProblemResolver with broken count: 0
 89s Done
 89s Entering ResolveByKeep
 89s 
 90s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
 90s Reading package lists...
 90s Building dependency tree...
 90s Reading state information...
 90s Starting pkgProblemResolver with broken count: 0
 90s Starting 2 pkgProblemResolver with broken count: 0
 90s Done
 90s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
 90s autopkgtest [11:48:49]: rebooting testbed after setup commands that affected boot
110s autopkgtest [11:49:09]: testbed running kernel: Linux 6.12.0-15-generic #15-Ubuntu SMP Tue Feb  4 15:05:57 UTC 2025
113s autopkgtest [11:49:12]: @@@@@@@@@@@@@@@@@@@@ apt-source nanook
115s Get:1 http://ftpmaster.internal/ubuntu plucky/universe nanook 1.33+dfsg-6 (dsc) [2220 B]
115s Get:2 http://ftpmaster.internal/ubuntu plucky/universe nanook 1.33+dfsg-6 (tar) [95.2 kB]
115s Get:3 http://ftpmaster.internal/ubuntu plucky/universe nanook 1.33+dfsg-6 (diff) [1818 kB]
115s gpgv: Signature made Wed Dec 18 14:21:48 2024 UTC
115s gpgv:                using RSA key 8F91B227C7D6F2B1948C8236793CF67E8F0D11DA
115s gpgv:                issuer "emollier@debian.org"
115s gpgv: Can't check signature: No public key
115s dpkg-source: warning: cannot verify inline signature for ./nanook_1.33+dfsg-6.dsc: no acceptable signature found
115s autopkgtest [11:49:14]: testing package nanook version 1.33+dfsg-6
116s autopkgtest [11:49:15]: build not needed
116s autopkgtest [11:49:15]: test run-unit-test: preparing testbed
117s Reading package lists...
117s Building dependency tree...
117s Reading state information...
117s Starting pkgProblemResolver with broken count: 0
117s Starting 2 pkgProblemResolver with broken count: 0
117s Done
117s The following NEW packages will be installed:
117s   ca-certificates-java default-jre-headless fontconfig fontconfig-config
117s   fonts-dejavu-core fonts-dejavu-mono fonts-lmodern hdf5-tools java-common
117s   last-align libaec0 libapache-pom-java libblas3 libcairo2 libcommons-io-java
117s   libcommons-parent-java libdatrie1 libdeflate0 libfontconfig1 libfreetype6
117s   libgfortran5 libgomp1 libgraphite2-3 libharfbuzz0b libhdf5-310
117s   libhdf5-hl-310 libice6 libjbig0 libjpeg-turbo8 libjpeg8 libkpathsea6
117s   liblapack3 liblcms2-2 libmpfi0 libpango-1.0-0 libpangocairo-1.0-0
117s   libpangoft2-1.0-0 libpaper-utils libpaper2 libpcsclite1 libpixman-1-0
117s   libpotrace0 libptexenc1 libsharpyuv0 libsm6 libsynctex2 libsz2 libtcl8.6
117s   libteckit0 libtexlua53-5 libthai-data libthai0 libtiff6 libtk8.6 libwebp7
117s   libxaw7 libxcb-render0 libxcb-shm0 libxft2 libxi6 libxmu6 libxpm4
117s   libxrender1 libxss1 libxt6t64 libzzip-0-13t64 littler nanook nanook-examples
117s   openjdk-21-jre-headless r-base-core r-cran-cli r-cran-colorspace
117s   r-cran-fansi r-cran-farver r-cran-ggplot2 r-cran-glue r-cran-gridextra
117s   r-cran-gtable r-cran-isoband r-cran-labeling r-cran-lattice r-cran-lifecycle
117s   r-cran-littler r-cran-magrittr r-cran-mass r-cran-matrix r-cran-mgcv
117s   r-cran-munsell r-cran-nlme r-cran-pillar r-cran-pkgconfig r-cran-pkgkitten
117s   r-cran-plyr r-cran-r6 r-cran-rcolorbrewer r-cran-rcpp r-cran-reshape
117s   r-cran-rlang r-cran-scales r-cran-tibble r-cran-utf8 r-cran-vctrs
117s   r-cran-viridislite r-cran-withr t1utils tex-common texlive-base
117s   texlive-binaries texlive-latex-base unzip x11-common xdg-utils zip
117s 0 upgraded, 114 newly installed, 0 to remove and 0 not upgraded.
117s Need to get 163 MB of archives.
117s After this operation, 456 MB of additional disk space will be used.
117s Get:1 http://ftpmaster.internal/ubuntu plucky/main s390x ca-certificates-java all 20240118 [11.6 kB]
117s Get:2 http://ftpmaster.internal/ubuntu plucky/main s390x java-common all 0.76 [6852 B]
117s Get:3 http://ftpmaster.internal/ubuntu plucky/main s390x liblcms2-2 s390x 2.16-2 [175 kB]
118s Get:4 http://ftpmaster.internal/ubuntu plucky/main s390x libjpeg-turbo8 s390x 2.1.5-3ubuntu2 [147 kB]
118s Get:5 http://ftpmaster.internal/ubuntu plucky/main s390x libjpeg8 s390x 8c-2ubuntu11 [2146 B]
118s Get:6 http://ftpmaster.internal/ubuntu plucky/main s390x libpcsclite1 s390x 2.3.1-1 [24.5 kB]
118s Get:7 http://ftpmaster.internal/ubuntu plucky/main s390x openjdk-21-jre-headless s390x 21.0.6+7-1 [43.8 MB]
120s Get:8 http://ftpmaster.internal/ubuntu plucky/main s390x default-jre-headless s390x 2:1.21-76 [3182 B]
120s Get:9 http://ftpmaster.internal/ubuntu plucky/main s390x libfreetype6 s390x 2.13.3+dfsg-1 [431 kB]
120s Get:10 http://ftpmaster.internal/ubuntu plucky/main s390x fonts-dejavu-mono all 2.37-8 [502 kB]
121s Get:11 http://ftpmaster.internal/ubuntu plucky/main s390x fonts-dejavu-core all 2.37-8 [835 kB]
121s Get:12 http://ftpmaster.internal/ubuntu plucky/main s390x fontconfig-config s390x 2.15.0-2ubuntu1 [37.5 kB]
121s Get:13 http://ftpmaster.internal/ubuntu plucky/main s390x libfontconfig1 s390x 2.15.0-2ubuntu1 [150 kB]
121s Get:14 http://ftpmaster.internal/ubuntu plucky/main s390x fontconfig s390x 2.15.0-2ubuntu1 [191 kB]
121s Get:15 http://ftpmaster.internal/ubuntu plucky/universe s390x fonts-lmodern all 2.005-1 [4799 kB]
121s Get:16 http://ftpmaster.internal/ubuntu plucky/universe s390x libaec0 s390x 1.1.3-1 [25.7 kB]
121s Get:17 http://ftpmaster.internal/ubuntu plucky/universe s390x libsz2 s390x 1.1.3-1 [5442 B]
121s Get:18 http://ftpmaster.internal/ubuntu plucky/universe s390x libhdf5-310 s390x 1.14.5+repack-3 [1477 kB]
121s Get:19 http://ftpmaster.internal/ubuntu plucky/universe s390x libhdf5-hl-310 s390x 1.14.5+repack-3 [61.0 kB]
121s Get:20 http://ftpmaster.internal/ubuntu plucky/universe s390x hdf5-tools s390x 1.14.5+repack-3 [403 kB]
121s Get:21 http://ftpmaster.internal/ubuntu plucky-proposed/universe s390x last-align s390x 1609-1 [1017 kB]
121s Get:22 http://ftpmaster.internal/ubuntu plucky/universe s390x libapache-pom-java all 33-2 [5874 B]
121s Get:23 http://ftpmaster.internal/ubuntu plucky/main s390x libblas3 s390x 3.12.1-2 [252 kB]
122s Get:24 http://ftpmaster.internal/ubuntu plucky/main s390x libpixman-1-0 s390x 0.44.0-3 [201 kB]
122s Get:25 http://ftpmaster.internal/ubuntu plucky/main s390x libxcb-render0 s390x 1.17.0-2 [17.0 kB]
122s Get:26 http://ftpmaster.internal/ubuntu plucky/main s390x libxcb-shm0 s390x 1.17.0-2 [5862 B]
122s Get:27 http://ftpmaster.internal/ubuntu plucky/main s390x libxrender1 s390x 1:0.9.10-1.1build1 [20.4 kB]
122s Get:28 http://ftpmaster.internal/ubuntu plucky/main s390x libcairo2 s390x 1.18.2-2 [580 kB]
122s Get:29 http://ftpmaster.internal/ubuntu plucky/universe s390x libcommons-parent-java all 56-1 [10.7 kB]
122s Get:30 http://ftpmaster.internal/ubuntu plucky/universe s390x libcommons-io-java all 2.18.0-1 [477 kB]
122s Get:31 http://ftpmaster.internal/ubuntu plucky/main s390x libdatrie1 s390x 0.2.13-3build1 [20.6 kB]
122s Get:32 http://ftpmaster.internal/ubuntu plucky/main s390x libdeflate0 s390x 1.23-1 [46.1 kB]
122s Get:33 http://ftpmaster.internal/ubuntu plucky/main s390x libgfortran5 s390x 15-20250213-1ubuntu1 [620 kB]
122s Get:34 http://ftpmaster.internal/ubuntu plucky/main s390x libgomp1 s390x 15-20250213-1ubuntu1 [151 kB]
122s Get:35 http://ftpmaster.internal/ubuntu plucky/main s390x libgraphite2-3 s390x 1.3.14-2ubuntu1 [79.8 kB]
122s Get:36 http://ftpmaster.internal/ubuntu plucky/main s390x libharfbuzz0b s390x 10.2.0-1 [538 kB]
122s Get:37 http://ftpmaster.internal/ubuntu plucky/main s390x x11-common all 1:7.7+23ubuntu3 [21.7 kB]
122s Get:38 http://ftpmaster.internal/ubuntu plucky/main s390x libice6 s390x 2:1.1.1-1 [45.4 kB]
122s Get:39 http://ftpmaster.internal/ubuntu plucky/main s390x libkpathsea6 s390x 2024.20240313.70630+ds-5build2 [66.9 kB]
122s Get:40 http://ftpmaster.internal/ubuntu plucky/main s390x liblapack3 s390x 3.12.1-2 [2971 kB]
122s Get:41 http://ftpmaster.internal/ubuntu plucky/universe s390x libmpfi0 s390x 1.5.4+ds-4 [34.1 kB]
122s Get:42 http://ftpmaster.internal/ubuntu plucky/main s390x libthai-data all 0.1.29-2build1 [158 kB]
122s Get:43 http://ftpmaster.internal/ubuntu plucky/main s390x libthai0 s390x 0.1.29-2build1 [20.7 kB]
122s Get:44 http://ftpmaster.internal/ubuntu plucky/main s390x libpango-1.0-0 s390x 1.56.1-1 [253 kB]
122s Get:45 http://ftpmaster.internal/ubuntu plucky/main s390x libpangoft2-1.0-0 s390x 1.56.1-1 [50.3 kB]
122s Get:46 http://ftpmaster.internal/ubuntu plucky/main s390x libpangocairo-1.0-0 s390x 1.56.1-1 [28.3 kB]
122s Get:47 http://ftpmaster.internal/ubuntu plucky/main s390x libpaper2 s390x 2.2.5-0.3 [17.2 kB]
122s Get:48 http://ftpmaster.internal/ubuntu plucky/main s390x libpaper-utils s390x 2.2.5-0.3 [15.3 kB]
122s Get:49 http://ftpmaster.internal/ubuntu plucky/universe s390x libpotrace0 s390x 1.16-2build1 [18.7 kB]
122s Get:50 http://ftpmaster.internal/ubuntu plucky/main s390x libptexenc1 s390x 2024.20240313.70630+ds-5build2 [43.4 kB]
122s Get:51 http://ftpmaster.internal/ubuntu plucky/main s390x libsharpyuv0 s390x 1.5.0-0.1 [16.7 kB]
122s Get:52 http://ftpmaster.internal/ubuntu plucky/main s390x libsm6 s390x 2:1.2.4-1 [18.4 kB]
122s Get:53 http://ftpmaster.internal/ubuntu plucky/main s390x libsynctex2 s390x 2024.20240313.70630+ds-5build2 [64.6 kB]
122s Get:54 http://ftpmaster.internal/ubuntu plucky/main s390x libtcl8.6 s390x 8.6.16+dfsg-1 [1034 kB]
123s Get:55 http://ftpmaster.internal/ubuntu plucky/universe s390x libteckit0 s390x 2.5.12+ds1-1 [433 kB]
123s Get:56 http://ftpmaster.internal/ubuntu plucky/main s390x libtexlua53-5 s390x 2024.20240313.70630+ds-5build2 [131 kB]
123s Get:57 http://ftpmaster.internal/ubuntu plucky/main s390x libjbig0 s390x 2.1-6.1ubuntu2 [33.1 kB]
123s Get:58 http://ftpmaster.internal/ubuntu plucky/main s390x libwebp7 s390x 1.5.0-0.1 [210 kB]
123s Get:59 http://ftpmaster.internal/ubuntu plucky/main s390x libtiff6 s390x 4.5.1+git230720-4ubuntu4 [217 kB]
123s Get:60 http://ftpmaster.internal/ubuntu plucky/main s390x libxft2 s390x 2.3.6-1build1 [49.6 kB]
123s Get:61 http://ftpmaster.internal/ubuntu plucky/main s390x libxss1 s390x 1:1.2.3-1build3 [7396 B]
123s Get:62 http://ftpmaster.internal/ubuntu plucky/main s390x libtk8.6 s390x 8.6.16-1 [830 kB]
123s Get:63 http://ftpmaster.internal/ubuntu plucky/main s390x libxt6t64 s390x 1:1.2.1-1.2build1 [184 kB]
123s Get:64 http://ftpmaster.internal/ubuntu plucky/main s390x libxmu6 s390x 2:1.1.3-3build2 [53.0 kB]
123s Get:65 http://ftpmaster.internal/ubuntu plucky/main s390x libxpm4 s390x 1:3.5.17-1build2 [41.2 kB]
123s Get:66 http://ftpmaster.internal/ubuntu plucky/main s390x libxaw7 s390x 2:1.0.16-1 [201 kB]
123s Get:67 http://ftpmaster.internal/ubuntu plucky/main s390x libxi6 s390x 2:1.8.2-1 [35.4 kB]
123s Get:68 http://ftpmaster.internal/ubuntu plucky/universe s390x libzzip-0-13t64 s390x 0.13.72+dfsg.1-1.2build1 [28.6 kB]
123s Get:69 http://ftpmaster.internal/ubuntu plucky/main s390x zip s390x 3.0-14ubuntu2 [187 kB]
123s Get:70 http://ftpmaster.internal/ubuntu plucky/main s390x unzip s390x 6.0-28ubuntu6 [186 kB]
123s Get:71 http://ftpmaster.internal/ubuntu plucky/main s390x xdg-utils all 1.2.1-2ubuntu1 [66.0 kB]
123s Get:72 http://ftpmaster.internal/ubuntu plucky/universe s390x r-base-core s390x 4.4.2-1build1 [28.6 MB]
126s Get:73 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-littler s390x 0.3.20-2 [95.0 kB]
126s Get:74 http://ftpmaster.internal/ubuntu plucky/universe s390x littler all 0.3.20-2 [2554 B]
126s Get:75 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-cli s390x 3.6.3-1 [1349 kB]
127s Get:76 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-glue s390x 1.8.0-1 [164 kB]
127s Get:77 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-rlang s390x 1.1.5-1 [1713 kB]
127s Get:78 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-lifecycle all 1.0.4+dfsg-1 [110 kB]
127s Get:79 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-gtable all 0.3.6+dfsg-1 [199 kB]
127s Get:80 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-isoband s390x 0.2.7-1 [1481 kB]
127s Get:81 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-mass s390x 7.3-64-1 [1113 kB]
127s Get:82 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-lattice s390x 0.22-6-1 [1340 kB]
127s Get:83 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-nlme s390x 3.1.167-1 [2323 kB]
127s Get:84 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-matrix s390x 1.7-2-1 [4441 kB]
128s Get:85 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-mgcv s390x 1.9-1-1 [3348 kB]
128s Get:86 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-farver s390x 2.1.2-1 [1353 kB]
128s Get:87 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-labeling all 0.4.3-1 [62.1 kB]
128s Get:88 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-colorspace s390x 2.1-1+dfsg-1 [1567 kB]
128s Get:89 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-munsell all 0.5.1-1 [213 kB]
128s Get:90 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-r6 all 2.5.1-1 [99.0 kB]
128s Get:91 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-rcolorbrewer all 1.1-3-1build1 [55.4 kB]
128s Get:92 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-viridislite all 0.4.2-2 [1088 kB]
129s Get:93 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-scales all 1.3.0-1 [603 kB]
129s Get:94 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-fansi s390x 1.0.5-1 [615 kB]
129s Get:95 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-magrittr s390x 2.0.3-1 [154 kB]
129s Get:96 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-utf8 s390x 1.2.4-1 [143 kB]
129s Get:97 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-vctrs s390x 0.6.5-1 [1448 kB]
129s Get:98 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-pillar all 1.10.1+dfsg-1 [453 kB]
129s Get:99 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-pkgconfig all 2.0.3-2build1 [19.7 kB]
129s Get:100 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-tibble s390x 3.2.1+dfsg-3 [420 kB]
129s Get:101 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-withr all 3.0.2+dfsg-1 [214 kB]
129s Get:102 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-ggplot2 all 3.5.1+dfsg-1 [3940 kB]
130s Get:103 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-gridextra all 2.3-3build1 [1024 kB]
130s Get:104 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-pkgkitten all 0.2.4-1 [27.2 kB]
130s Get:105 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-rcpp s390x 1.0.14-1 [2003 kB]
130s Get:106 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-plyr s390x 1.8.9-1 [835 kB]
131s Get:107 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-reshape all 0.8.9-1 [168 kB]
131s Get:108 http://ftpmaster.internal/ubuntu plucky/universe s390x tex-common all 6.18 [32.8 kB]
131s Get:109 http://ftpmaster.internal/ubuntu plucky/main s390x t1utils s390x 1.41-4build3 [65.6 kB]
131s Get:110 http://ftpmaster.internal/ubuntu plucky/universe s390x texlive-binaries s390x 2024.20240313.70630+ds-5build2 [9171 kB]
131s Get:111 http://ftpmaster.internal/ubuntu plucky/universe s390x texlive-base all 2024.20241115-1 [22.5 MB]
132s Get:112 http://ftpmaster.internal/ubuntu plucky/universe s390x texlive-latex-base all 2024.20241115-1 [1260 kB]
132s Get:113 http://ftpmaster.internal/ubuntu plucky/universe s390x nanook all 1.33+dfsg-6 [195 kB]
132s Get:114 http://ftpmaster.internal/ubuntu plucky/universe s390x nanook-examples all 1.33+dfsg-6 [1814 kB]
133s Preconfiguring packages ...
133s Fetched 163 MB in 15s (10.7 MB/s)
133s Selecting previously unselected package ca-certificates-java.
133s (Reading database ... 
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133s Preparing to unpack .../000-ca-certificates-java_20240118_all.deb ...
133s Unpacking ca-certificates-java (20240118) ...
133s Selecting previously unselected package java-common.
133s Preparing to unpack .../001-java-common_0.76_all.deb ...
133s Unpacking java-common (0.76) ...
133s Selecting previously unselected package liblcms2-2:s390x.
133s Preparing to unpack .../002-liblcms2-2_2.16-2_s390x.deb ...
133s Unpacking liblcms2-2:s390x (2.16-2) ...
133s Selecting previously unselected package libjpeg-turbo8:s390x.
133s Preparing to unpack .../003-libjpeg-turbo8_2.1.5-3ubuntu2_s390x.deb ...
133s Unpacking libjpeg-turbo8:s390x (2.1.5-3ubuntu2) ...
133s Selecting previously unselected package libjpeg8:s390x.
133s Preparing to unpack .../004-libjpeg8_8c-2ubuntu11_s390x.deb ...
133s Unpacking libjpeg8:s390x (8c-2ubuntu11) ...
133s Selecting previously unselected package libpcsclite1:s390x.
133s Preparing to unpack .../005-libpcsclite1_2.3.1-1_s390x.deb ...
133s Unpacking libpcsclite1:s390x (2.3.1-1) ...
133s Selecting previously unselected package openjdk-21-jre-headless:s390x.
133s Preparing to unpack .../006-openjdk-21-jre-headless_21.0.6+7-1_s390x.deb ...
133s Unpacking openjdk-21-jre-headless:s390x (21.0.6+7-1) ...
134s Selecting previously unselected package default-jre-headless.
139s Preparing to unpack .../007-default-jre-headless_2%3a1.21-76_s390x.deb ...
139s Unpacking default-jre-headless (2:1.21-76) ...
139s Selecting previously unselected package libfreetype6:s390x.
139s Preparing to unpack .../008-libfreetype6_2.13.3+dfsg-1_s390x.deb ...
139s Unpacking libfreetype6:s390x (2.13.3+dfsg-1) ...
139s Selecting previously unselected package fonts-dejavu-mono.
139s Preparing to unpack .../009-fonts-dejavu-mono_2.37-8_all.deb ...
139s Unpacking fonts-dejavu-mono (2.37-8) ...
139s Selecting previously unselected package fonts-dejavu-core.
139s Preparing to unpack .../010-fonts-dejavu-core_2.37-8_all.deb ...
139s Unpacking fonts-dejavu-core (2.37-8) ...
139s Selecting previously unselected package fontconfig-config.
139s Preparing to unpack .../011-fontconfig-config_2.15.0-2ubuntu1_s390x.deb ...
139s Unpacking fontconfig-config (2.15.0-2ubuntu1) ...
139s Selecting previously unselected package libfontconfig1:s390x.
139s Preparing to unpack .../012-libfontconfig1_2.15.0-2ubuntu1_s390x.deb ...
139s Unpacking libfontconfig1:s390x (2.15.0-2ubuntu1) ...
139s Selecting previously unselected package fontconfig.
139s Preparing to unpack .../013-fontconfig_2.15.0-2ubuntu1_s390x.deb ...
139s Unpacking fontconfig (2.15.0-2ubuntu1) ...
139s Selecting previously unselected package fonts-lmodern.
139s Preparing to unpack .../014-fonts-lmodern_2.005-1_all.deb ...
139s Unpacking fonts-lmodern (2.005-1) ...
139s Selecting previously unselected package libaec0:s390x.
139s Preparing to unpack .../015-libaec0_1.1.3-1_s390x.deb ...
139s Unpacking libaec0:s390x (1.1.3-1) ...
139s Selecting previously unselected package libsz2:s390x.
139s Preparing to unpack .../016-libsz2_1.1.3-1_s390x.deb ...
139s Unpacking libsz2:s390x (1.1.3-1) ...
139s Selecting previously unselected package libhdf5-310:s390x.
139s Preparing to unpack .../017-libhdf5-310_1.14.5+repack-3_s390x.deb ...
139s Unpacking libhdf5-310:s390x (1.14.5+repack-3) ...
139s Selecting previously unselected package libhdf5-hl-310:s390x.
139s Preparing to unpack .../018-libhdf5-hl-310_1.14.5+repack-3_s390x.deb ...
139s Unpacking libhdf5-hl-310:s390x (1.14.5+repack-3) ...
139s Selecting previously unselected package hdf5-tools.
139s Preparing to unpack .../019-hdf5-tools_1.14.5+repack-3_s390x.deb ...
139s Unpacking hdf5-tools (1.14.5+repack-3) ...
139s Selecting previously unselected package last-align.
139s Preparing to unpack .../020-last-align_1609-1_s390x.deb ...
139s Unpacking last-align (1609-1) ...
139s Selecting previously unselected package libapache-pom-java.
139s Preparing to unpack .../021-libapache-pom-java_33-2_all.deb ...
139s Unpacking libapache-pom-java (33-2) ...
139s Selecting previously unselected package libblas3:s390x.
139s Preparing to unpack .../022-libblas3_3.12.1-2_s390x.deb ...
139s Unpacking libblas3:s390x (3.12.1-2) ...
139s Selecting previously unselected package libpixman-1-0:s390x.
139s Preparing to unpack .../023-libpixman-1-0_0.44.0-3_s390x.deb ...
139s Unpacking libpixman-1-0:s390x (0.44.0-3) ...
139s Selecting previously unselected package libxcb-render0:s390x.
139s Preparing to unpack .../024-libxcb-render0_1.17.0-2_s390x.deb ...
139s Unpacking libxcb-render0:s390x (1.17.0-2) ...
139s Selecting previously unselected package libxcb-shm0:s390x.
139s Preparing to unpack .../025-libxcb-shm0_1.17.0-2_s390x.deb ...
139s Unpacking libxcb-shm0:s390x (1.17.0-2) ...
139s Selecting previously unselected package libxrender1:s390x.
139s Preparing to unpack .../026-libxrender1_1%3a0.9.10-1.1build1_s390x.deb ...
139s Unpacking libxrender1:s390x (1:0.9.10-1.1build1) ...
139s Selecting previously unselected package libcairo2:s390x.
139s Preparing to unpack .../027-libcairo2_1.18.2-2_s390x.deb ...
139s Unpacking libcairo2:s390x (1.18.2-2) ...
139s Selecting previously unselected package libcommons-parent-java.
139s Preparing to unpack .../028-libcommons-parent-java_56-1_all.deb ...
139s Unpacking libcommons-parent-java (56-1) ...
139s Selecting previously unselected package libcommons-io-java.
139s Preparing to unpack .../029-libcommons-io-java_2.18.0-1_all.deb ...
139s Unpacking libcommons-io-java (2.18.0-1) ...
139s Selecting previously unselected package libdatrie1:s390x.
139s Preparing to unpack .../030-libdatrie1_0.2.13-3build1_s390x.deb ...
139s Unpacking libdatrie1:s390x (0.2.13-3build1) ...
139s Selecting previously unselected package libdeflate0:s390x.
139s Preparing to unpack .../031-libdeflate0_1.23-1_s390x.deb ...
139s Unpacking libdeflate0:s390x (1.23-1) ...
139s Selecting previously unselected package libgfortran5:s390x.
139s Preparing to unpack .../032-libgfortran5_15-20250213-1ubuntu1_s390x.deb ...
139s Unpacking libgfortran5:s390x (15-20250213-1ubuntu1) ...
139s Selecting previously unselected package libgomp1:s390x.
139s Preparing to unpack .../033-libgomp1_15-20250213-1ubuntu1_s390x.deb ...
139s Unpacking libgomp1:s390x (15-20250213-1ubuntu1) ...
139s Selecting previously unselected package libgraphite2-3:s390x.
139s Preparing to unpack .../034-libgraphite2-3_1.3.14-2ubuntu1_s390x.deb ...
139s Unpacking libgraphite2-3:s390x (1.3.14-2ubuntu1) ...
139s Selecting previously unselected package libharfbuzz0b:s390x.
139s Preparing to unpack .../035-libharfbuzz0b_10.2.0-1_s390x.deb ...
139s Unpacking libharfbuzz0b:s390x (10.2.0-1) ...
139s Selecting previously unselected package x11-common.
139s Preparing to unpack .../036-x11-common_1%3a7.7+23ubuntu3_all.deb ...
139s Unpacking x11-common (1:7.7+23ubuntu3) ...
139s Selecting previously unselected package libice6:s390x.
139s Preparing to unpack .../037-libice6_2%3a1.1.1-1_s390x.deb ...
139s Unpacking libice6:s390x (2:1.1.1-1) ...
139s Selecting previously unselected package libkpathsea6:s390x.
139s Preparing to unpack .../038-libkpathsea6_2024.20240313.70630+ds-5build2_s390x.deb ...
139s Unpacking libkpathsea6:s390x (2024.20240313.70630+ds-5build2) ...
139s Selecting previously unselected package liblapack3:s390x.
139s Preparing to unpack .../039-liblapack3_3.12.1-2_s390x.deb ...
139s Unpacking liblapack3:s390x (3.12.1-2) ...
139s Selecting previously unselected package libmpfi0:s390x.
139s Preparing to unpack .../040-libmpfi0_1.5.4+ds-4_s390x.deb ...
139s Unpacking libmpfi0:s390x (1.5.4+ds-4) ...
139s Selecting previously unselected package libthai-data.
139s Preparing to unpack .../041-libthai-data_0.1.29-2build1_all.deb ...
139s Unpacking libthai-data (0.1.29-2build1) ...
139s Selecting previously unselected package libthai0:s390x.
139s Preparing to unpack .../042-libthai0_0.1.29-2build1_s390x.deb ...
139s Unpacking libthai0:s390x (0.1.29-2build1) ...
139s Selecting previously unselected package libpango-1.0-0:s390x.
139s Preparing to unpack .../043-libpango-1.0-0_1.56.1-1_s390x.deb ...
139s Unpacking libpango-1.0-0:s390x (1.56.1-1) ...
139s Selecting previously unselected package libpangoft2-1.0-0:s390x.
139s Preparing to unpack .../044-libpangoft2-1.0-0_1.56.1-1_s390x.deb ...
139s Unpacking libpangoft2-1.0-0:s390x (1.56.1-1) ...
139s Selecting previously unselected package libpangocairo-1.0-0:s390x.
139s Preparing to unpack .../045-libpangocairo-1.0-0_1.56.1-1_s390x.deb ...
139s Unpacking libpangocairo-1.0-0:s390x (1.56.1-1) ...
139s Selecting previously unselected package libpaper2:s390x.
139s Preparing to unpack .../046-libpaper2_2.2.5-0.3_s390x.deb ...
139s Unpacking libpaper2:s390x (2.2.5-0.3) ...
139s Selecting previously unselected package libpaper-utils.
139s Preparing to unpack .../047-libpaper-utils_2.2.5-0.3_s390x.deb ...
139s Unpacking libpaper-utils (2.2.5-0.3) ...
139s Selecting previously unselected package libpotrace0:s390x.
139s Preparing to unpack .../048-libpotrace0_1.16-2build1_s390x.deb ...
139s Unpacking libpotrace0:s390x (1.16-2build1) ...
139s Selecting previously unselected package libptexenc1:s390x.
139s Preparing to unpack .../049-libptexenc1_2024.20240313.70630+ds-5build2_s390x.deb ...
139s Unpacking libptexenc1:s390x (2024.20240313.70630+ds-5build2) ...
139s Selecting previously unselected package libsharpyuv0:s390x.
139s Preparing to unpack .../050-libsharpyuv0_1.5.0-0.1_s390x.deb ...
139s Unpacking libsharpyuv0:s390x (1.5.0-0.1) ...
139s Selecting previously unselected package libsm6:s390x.
139s Preparing to unpack .../051-libsm6_2%3a1.2.4-1_s390x.deb ...
139s Unpacking libsm6:s390x (2:1.2.4-1) ...
139s Selecting previously unselected package libsynctex2:s390x.
139s Preparing to unpack .../052-libsynctex2_2024.20240313.70630+ds-5build2_s390x.deb ...
139s Unpacking libsynctex2:s390x (2024.20240313.70630+ds-5build2) ...
139s Selecting previously unselected package libtcl8.6:s390x.
139s Preparing to unpack .../053-libtcl8.6_8.6.16+dfsg-1_s390x.deb ...
139s Unpacking libtcl8.6:s390x (8.6.16+dfsg-1) ...
139s Selecting previously unselected package libteckit0:s390x.
139s Preparing to unpack .../054-libteckit0_2.5.12+ds1-1_s390x.deb ...
139s Unpacking libteckit0:s390x (2.5.12+ds1-1) ...
139s Selecting previously unselected package libtexlua53-5:s390x.
139s Preparing to unpack .../055-libtexlua53-5_2024.20240313.70630+ds-5build2_s390x.deb ...
139s Unpacking libtexlua53-5:s390x (2024.20240313.70630+ds-5build2) ...
139s Selecting previously unselected package libjbig0:s390x.
139s Preparing to unpack .../056-libjbig0_2.1-6.1ubuntu2_s390x.deb ...
139s Unpacking libjbig0:s390x (2.1-6.1ubuntu2) ...
139s Selecting previously unselected package libwebp7:s390x.
139s Preparing to unpack .../057-libwebp7_1.5.0-0.1_s390x.deb ...
139s Unpacking libwebp7:s390x (1.5.0-0.1) ...
139s Selecting previously unselected package libtiff6:s390x.
139s Preparing to unpack .../058-libtiff6_4.5.1+git230720-4ubuntu4_s390x.deb ...
139s Unpacking libtiff6:s390x (4.5.1+git230720-4ubuntu4) ...
139s Selecting previously unselected package libxft2:s390x.
139s Preparing to unpack .../059-libxft2_2.3.6-1build1_s390x.deb ...
139s Unpacking libxft2:s390x (2.3.6-1build1) ...
139s Selecting previously unselected package libxss1:s390x.
139s Preparing to unpack .../060-libxss1_1%3a1.2.3-1build3_s390x.deb ...
139s Unpacking libxss1:s390x (1:1.2.3-1build3) ...
139s Selecting previously unselected package libtk8.6:s390x.
139s Preparing to unpack .../061-libtk8.6_8.6.16-1_s390x.deb ...
139s Unpacking libtk8.6:s390x (8.6.16-1) ...
139s Selecting previously unselected package libxt6t64:s390x.
139s Preparing to unpack .../062-libxt6t64_1%3a1.2.1-1.2build1_s390x.deb ...
139s Unpacking libxt6t64:s390x (1:1.2.1-1.2build1) ...
139s Selecting previously unselected package libxmu6:s390x.
139s Preparing to unpack .../063-libxmu6_2%3a1.1.3-3build2_s390x.deb ...
139s Unpacking libxmu6:s390x (2:1.1.3-3build2) ...
139s Selecting previously unselected package libxpm4:s390x.
139s Preparing to unpack .../064-libxpm4_1%3a3.5.17-1build2_s390x.deb ...
139s Unpacking libxpm4:s390x (1:3.5.17-1build2) ...
139s Selecting previously unselected package libxaw7:s390x.
139s Preparing to unpack .../065-libxaw7_2%3a1.0.16-1_s390x.deb ...
139s Unpacking libxaw7:s390x (2:1.0.16-1) ...
139s Selecting previously unselected package libxi6:s390x.
139s Preparing to unpack .../066-libxi6_2%3a1.8.2-1_s390x.deb ...
139s Unpacking libxi6:s390x (2:1.8.2-1) ...
139s Selecting previously unselected package libzzip-0-13t64:s390x.
139s Preparing to unpack .../067-libzzip-0-13t64_0.13.72+dfsg.1-1.2build1_s390x.deb ...
139s Unpacking libzzip-0-13t64:s390x (0.13.72+dfsg.1-1.2build1) ...
139s Selecting previously unselected package zip.
139s Preparing to unpack .../068-zip_3.0-14ubuntu2_s390x.deb ...
139s Unpacking zip (3.0-14ubuntu2) ...
139s Selecting previously unselected package unzip.
139s Preparing to unpack .../069-unzip_6.0-28ubuntu6_s390x.deb ...
139s Unpacking unzip (6.0-28ubuntu6) ...
139s Selecting previously unselected package xdg-utils.
139s Preparing to unpack .../070-xdg-utils_1.2.1-2ubuntu1_all.deb ...
139s Unpacking xdg-utils (1.2.1-2ubuntu1) ...
139s Selecting previously unselected package r-base-core.
139s Preparing to unpack .../071-r-base-core_4.4.2-1build1_s390x.deb ...
139s Unpacking r-base-core (4.4.2-1build1) ...
139s Selecting previously unselected package r-cran-littler.
139s Preparing to unpack .../072-r-cran-littler_0.3.20-2_s390x.deb ...
139s Unpacking r-cran-littler (0.3.20-2) ...
139s Selecting previously unselected package littler.
139s Preparing to unpack .../073-littler_0.3.20-2_all.deb ...
139s Unpacking littler (0.3.20-2) ...
139s Selecting previously unselected package r-cran-cli.
139s Preparing to unpack .../074-r-cran-cli_3.6.3-1_s390x.deb ...
139s Unpacking r-cran-cli (3.6.3-1) ...
139s Selecting previously unselected package r-cran-glue.
139s Preparing to unpack .../075-r-cran-glue_1.8.0-1_s390x.deb ...
139s Unpacking r-cran-glue (1.8.0-1) ...
139s Selecting previously unselected package r-cran-rlang.
139s Preparing to unpack .../076-r-cran-rlang_1.1.5-1_s390x.deb ...
139s Unpacking r-cran-rlang (1.1.5-1) ...
139s Selecting previously unselected package r-cran-lifecycle.
139s Preparing to unpack .../077-r-cran-lifecycle_1.0.4+dfsg-1_all.deb ...
139s Unpacking r-cran-lifecycle (1.0.4+dfsg-1) ...
139s Selecting previously unselected package r-cran-gtable.
139s Preparing to unpack .../078-r-cran-gtable_0.3.6+dfsg-1_all.deb ...
139s Unpacking r-cran-gtable (0.3.6+dfsg-1) ...
139s Selecting previously unselected package r-cran-isoband.
139s Preparing to unpack .../079-r-cran-isoband_0.2.7-1_s390x.deb ...
139s Unpacking r-cran-isoband (0.2.7-1) ...
139s Selecting previously unselected package r-cran-mass.
139s Preparing to unpack .../080-r-cran-mass_7.3-64-1_s390x.deb ...
139s Unpacking r-cran-mass (7.3-64-1) ...
139s Selecting previously unselected package r-cran-lattice.
139s Preparing to unpack .../081-r-cran-lattice_0.22-6-1_s390x.deb ...
139s Unpacking r-cran-lattice (0.22-6-1) ...
139s Selecting previously unselected package r-cran-nlme.
139s Preparing to unpack .../082-r-cran-nlme_3.1.167-1_s390x.deb ...
139s Unpacking r-cran-nlme (3.1.167-1) ...
139s Selecting previously unselected package r-cran-matrix.
139s Preparing to unpack .../083-r-cran-matrix_1.7-2-1_s390x.deb ...
139s Unpacking r-cran-matrix (1.7-2-1) ...
139s Selecting previously unselected package r-cran-mgcv.
139s Preparing to unpack .../084-r-cran-mgcv_1.9-1-1_s390x.deb ...
139s Unpacking r-cran-mgcv (1.9-1-1) ...
139s Selecting previously unselected package r-cran-farver.
139s Preparing to unpack .../085-r-cran-farver_2.1.2-1_s390x.deb ...
139s Unpacking r-cran-farver (2.1.2-1) ...
139s Selecting previously unselected package r-cran-labeling.
139s Preparing to unpack .../086-r-cran-labeling_0.4.3-1_all.deb ...
139s Unpacking r-cran-labeling (0.4.3-1) ...
139s Selecting previously unselected package r-cran-colorspace.
139s Preparing to unpack .../087-r-cran-colorspace_2.1-1+dfsg-1_s390x.deb ...
139s Unpacking r-cran-colorspace (2.1-1+dfsg-1) ...
139s Selecting previously unselected package r-cran-munsell.
139s Preparing to unpack .../088-r-cran-munsell_0.5.1-1_all.deb ...
139s Unpacking r-cran-munsell (0.5.1-1) ...
139s Selecting previously unselected package r-cran-r6.
139s Preparing to unpack .../089-r-cran-r6_2.5.1-1_all.deb ...
139s Unpacking r-cran-r6 (2.5.1-1) ...
139s Selecting previously unselected package r-cran-rcolorbrewer.
139s Preparing to unpack .../090-r-cran-rcolorbrewer_1.1-3-1build1_all.deb ...
139s Unpacking r-cran-rcolorbrewer (1.1-3-1build1) ...
139s Selecting previously unselected package r-cran-viridislite.
139s Preparing to unpack .../091-r-cran-viridislite_0.4.2-2_all.deb ...
139s Unpacking r-cran-viridislite (0.4.2-2) ...
139s Selecting previously unselected package r-cran-scales.
139s Preparing to unpack .../092-r-cran-scales_1.3.0-1_all.deb ...
139s Unpacking r-cran-scales (1.3.0-1) ...
139s Selecting previously unselected package r-cran-fansi.
139s Preparing to unpack .../093-r-cran-fansi_1.0.5-1_s390x.deb ...
139s Unpacking r-cran-fansi (1.0.5-1) ...
139s Selecting previously unselected package r-cran-magrittr.
139s Preparing to unpack .../094-r-cran-magrittr_2.0.3-1_s390x.deb ...
139s Unpacking r-cran-magrittr (2.0.3-1) ...
139s Selecting previously unselected package r-cran-utf8.
139s Preparing to unpack .../095-r-cran-utf8_1.2.4-1_s390x.deb ...
139s Unpacking r-cran-utf8 (1.2.4-1) ...
139s Selecting previously unselected package r-cran-vctrs.
139s Preparing to unpack .../096-r-cran-vctrs_0.6.5-1_s390x.deb ...
139s Unpacking r-cran-vctrs (0.6.5-1) ...
139s Selecting previously unselected package r-cran-pillar.
139s Preparing to unpack .../097-r-cran-pillar_1.10.1+dfsg-1_all.deb ...
139s Unpacking r-cran-pillar (1.10.1+dfsg-1) ...
139s Selecting previously unselected package r-cran-pkgconfig.
139s Preparing to unpack .../098-r-cran-pkgconfig_2.0.3-2build1_all.deb ...
139s Unpacking r-cran-pkgconfig (2.0.3-2build1) ...
139s Selecting previously unselected package r-cran-tibble.
139s Preparing to unpack .../099-r-cran-tibble_3.2.1+dfsg-3_s390x.deb ...
139s Unpacking r-cran-tibble (3.2.1+dfsg-3) ...
139s Selecting previously unselected package r-cran-withr.
139s Preparing to unpack .../100-r-cran-withr_3.0.2+dfsg-1_all.deb ...
139s Unpacking r-cran-withr (3.0.2+dfsg-1) ...
139s Selecting previously unselected package r-cran-ggplot2.
139s Preparing to unpack .../101-r-cran-ggplot2_3.5.1+dfsg-1_all.deb ...
139s Unpacking r-cran-ggplot2 (3.5.1+dfsg-1) ...
139s Selecting previously unselected package r-cran-gridextra.
139s Preparing to unpack .../102-r-cran-gridextra_2.3-3build1_all.deb ...
139s Unpacking r-cran-gridextra (2.3-3build1) ...
139s Selecting previously unselected package r-cran-pkgkitten.
139s Preparing to unpack .../103-r-cran-pkgkitten_0.2.4-1_all.deb ...
139s Unpacking r-cran-pkgkitten (0.2.4-1) ...
139s Selecting previously unselected package r-cran-rcpp.
139s Preparing to unpack .../104-r-cran-rcpp_1.0.14-1_s390x.deb ...
139s Unpacking r-cran-rcpp (1.0.14-1) ...
139s Selecting previously unselected package r-cran-plyr.
139s Preparing to unpack .../105-r-cran-plyr_1.8.9-1_s390x.deb ...
139s Unpacking r-cran-plyr (1.8.9-1) ...
139s Selecting previously unselected package r-cran-reshape.
139s Preparing to unpack .../106-r-cran-reshape_0.8.9-1_all.deb ...
139s Unpacking r-cran-reshape (0.8.9-1) ...
139s Selecting previously unselected package tex-common.
139s Preparing to unpack .../107-tex-common_6.18_all.deb ...
139s Unpacking tex-common (6.18) ...
139s Selecting previously unselected package t1utils.
139s Preparing to unpack .../108-t1utils_1.41-4build3_s390x.deb ...
139s Unpacking t1utils (1.41-4build3) ...
139s Selecting previously unselected package texlive-binaries.
139s Preparing to unpack .../109-texlive-binaries_2024.20240313.70630+ds-5build2_s390x.deb ...
139s Unpacking texlive-binaries (2024.20240313.70630+ds-5build2) ...
139s Selecting previously unselected package texlive-base.
139s Preparing to unpack .../110-texlive-base_2024.20241115-1_all.deb ...
139s Unpacking texlive-base (2024.20241115-1) ...
139s Selecting previously unselected package texlive-latex-base.
139s Preparing to unpack .../111-texlive-latex-base_2024.20241115-1_all.deb ...
139s Unpacking texlive-latex-base (2024.20241115-1) ...
139s Selecting previously unselected package nanook.
139s Preparing to unpack .../112-nanook_1.33+dfsg-6_all.deb ...
139s Unpacking nanook (1.33+dfsg-6) ...
139s Selecting previously unselected package nanook-examples.
139s Preparing to unpack .../113-nanook-examples_1.33+dfsg-6_all.deb ...
139s Unpacking nanook-examples (1.33+dfsg-6) ...
139s Setting up libgraphite2-3:s390x (1.3.14-2ubuntu1) ...
139s Setting up liblcms2-2:s390x (2.16-2) ...
139s Setting up libpixman-1-0:s390x (0.44.0-3) ...
139s Setting up libsharpyuv0:s390x (1.5.0-0.1) ...
139s Setting up nanook-examples (1.33+dfsg-6) ...
139s Setting up libxpm4:s390x (1:3.5.17-1build2) ...
139s Setting up libxi6:s390x (2:1.8.2-1) ...
139s Setting up java-common (0.76) ...
139s Setting up libxrender1:s390x (1:0.9.10-1.1build1) ...
139s Setting up libdatrie1:s390x (0.2.13-3build1) ...
139s Setting up libxcb-render0:s390x (1.17.0-2) ...
139s Setting up unzip (6.0-28ubuntu6) ...
139s Setting up x11-common (1:7.7+23ubuntu3) ...
139s Setting up libdeflate0:s390x (1.23-1) ...
139s Setting up libxcb-shm0:s390x (1.17.0-2) ...
139s Setting up libgomp1:s390x (15-20250213-1ubuntu1) ...
139s Setting up libjbig0:s390x (2.1-6.1ubuntu2) ...
139s Setting up libaec0:s390x (1.1.3-1) ...
139s Setting up last-align (1609-1) ...
139s Setting up tex-common (6.18) ...
139s update-language: texlive-base not installed and configured, doing nothing!
139s Setting up zip (3.0-14ubuntu2) ...
139s Setting up libblas3:s390x (3.12.1-2) ...
139s update-alternatives: using /usr/lib/s390x-linux-gnu/blas/libblas.so.3 to provide /usr/lib/s390x-linux-gnu/libblas.so.3 (libblas.so.3-s390x-linux-gnu) in auto mode
139s Setting up libzzip-0-13t64:s390x (0.13.72+dfsg.1-1.2build1) ...
139s Setting up libfreetype6:s390x (2.13.3+dfsg-1) ...
139s Setting up libteckit0:s390x (2.5.12+ds1-1) ...
139s Setting up libapache-pom-java (33-2) ...
139s Setting up t1utils (1.41-4build3) ...
139s Setting up libtexlua53-5:s390x (2024.20240313.70630+ds-5build2) ...
139s Setting up fonts-dejavu-mono (2.37-8) ...
139s Setting up libtcl8.6:s390x (8.6.16+dfsg-1) ...
139s Setting up libmpfi0:s390x (1.5.4+ds-4) ...
139s Setting up fonts-dejavu-core (2.37-8) ...
139s Setting up libpcsclite1:s390x (2.3.1-1) ...
139s Setting up libjpeg-turbo8:s390x (2.1.5-3ubuntu2) ...
139s Setting up libkpathsea6:s390x (2024.20240313.70630+ds-5build2) ...
139s Setting up libgfortran5:s390x (15-20250213-1ubuntu1) ...
139s Setting up libwebp7:s390x (1.5.0-0.1) ...
139s Setting up fonts-lmodern (2.005-1) ...
139s Setting up libharfbuzz0b:s390x (10.2.0-1) ...
139s Setting up libthai-data (0.1.29-2build1) ...
139s Setting up libxss1:s390x (1:1.2.3-1build3) ...
139s Setting up libpaper2:s390x (2.2.5-0.3) ...
139s Setting up ca-certificates-java (20240118) ...
139s No JRE found. Skipping Java certificates setup.
139s Setting up xdg-utils (1.2.1-2ubuntu1) ...
139s update-alternatives: using /usr/bin/xdg-open to provide /usr/bin/open (open) in auto mode
139s Setting up libsz2:s390x (1.1.3-1) ...
139s Setting up libsynctex2:s390x (2024.20240313.70630+ds-5build2) ...
139s Setting up libpotrace0:s390x (1.16-2build1) ...
139s Setting up libjpeg8:s390x (8c-2ubuntu11) ...
139s Setting up libice6:s390x (2:1.1.1-1) ...
139s Setting up liblapack3:s390x (3.12.1-2) ...
139s update-alternatives: using /usr/lib/s390x-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/s390x-linux-gnu/liblapack.so.3 (liblapack.so.3-s390x-linux-gnu) in auto mode
139s Setting up openjdk-21-jre-headless:s390x (21.0.6+7-1) ...
139s update-alternatives: using /usr/lib/jvm/java-21-openjdk-s390x/bin/java to provide /usr/bin/java (java) in auto mode
139s update-alternatives: using /usr/lib/jvm/java-21-openjdk-s390x/bin/jpackage to provide /usr/bin/jpackage (jpackage) in auto mode
139s update-alternatives: using /usr/lib/jvm/java-21-openjdk-s390x/bin/keytool to provide /usr/bin/keytool (keytool) in auto mode
139s update-alternatives: using /usr/lib/jvm/java-21-openjdk-s390x/bin/rmiregistry to provide /usr/bin/rmiregistry (rmiregistry) in auto mode
139s update-alternatives: using /usr/lib/jvm/java-21-openjdk-s390x/lib/jexec to provide /usr/bin/jexec (jexec) in auto mode
139s Setting up fontconfig-config (2.15.0-2ubuntu1) ...
139s Setting up libcommons-parent-java (56-1) ...
139s Setting up libpaper-utils (2.2.5-0.3) ...
139s Setting up libthai0:s390x (0.1.29-2build1) ...
139s Setting up libptexenc1:s390x (2024.20240313.70630+ds-5build2) ...
139s Setting up libhdf5-310:s390x (1.14.5+repack-3) ...
139s Setting up libtiff6:s390x (4.5.1+git230720-4ubuntu4) ...
139s Setting up libfontconfig1:s390x (2.15.0-2ubuntu1) ...
139s Setting up libsm6:s390x (2:1.2.4-1) ...
139s Setting up libhdf5-hl-310:s390x (1.14.5+repack-3) ...
139s Setting up fontconfig (2.15.0-2ubuntu1) ...
140s Regenerating fonts cache... done.
140s Setting up libxft2:s390x (2.3.6-1build1) ...
140s Setting up libcommons-io-java (2.18.0-1) ...
140s Setting up libtk8.6:s390x (8.6.16-1) ...
140s Setting up libpango-1.0-0:s390x (1.56.1-1) ...
140s Setting up libcairo2:s390x (1.18.2-2) ...
140s Setting up hdf5-tools (1.14.5+repack-3) ...
140s Setting up libxt6t64:s390x (1:1.2.1-1.2build1) ...
140s Setting up libpangoft2-1.0-0:s390x (1.56.1-1) ...
140s Setting up libpangocairo-1.0-0:s390x (1.56.1-1) ...
140s Setting up libxmu6:s390x (2:1.1.3-3build2) ...
140s Setting up libxaw7:s390x (2:1.0.16-1) ...
140s Setting up r-base-core (4.4.2-1build1) ...
140s Creating config file /etc/R/Renviron with new version
140s Setting up r-cran-labeling (0.4.3-1) ...
140s Setting up r-cran-lattice (0.22-6-1) ...
140s Setting up r-cran-nlme (3.1.167-1) ...
140s Setting up r-cran-farver (2.1.2-1) ...
140s Setting up r-cran-viridislite (0.4.2-2) ...
140s Setting up texlive-binaries (2024.20240313.70630+ds-5build2) ...
140s update-alternatives: using /usr/bin/xdvi-xaw to provide /usr/bin/xdvi.bin (xdvi.bin) in auto mode
140s update-alternatives: using /usr/bin/bibtex.original to provide /usr/bin/bibtex (bibtex) in auto mode
140s Setting up r-cran-r6 (2.5.1-1) ...
140s Setting up r-cran-pkgkitten (0.2.4-1) ...
140s Setting up texlive-base (2024.20241115-1) ...
140s tl-paper: setting paper size for dvips to a4: /var/lib/texmf/dvips/config/config-paper.ps
141s tl-paper: setting paper size for dvipdfmx to a4: /var/lib/texmf/dvipdfmx/dvipdfmx-paper.cfg
141s tl-paper: setting paper size for xdvi to a4: /var/lib/texmf/xdvi/XDvi-paper
141s tl-paper: setting paper size for pdftex to a4: /var/lib/texmf/tex/generic/tex-ini-files/pdftexconfig.tex
141s Setting up r-cran-magrittr (2.0.3-1) ...
141s Setting up r-cran-littler (0.3.20-2) ...
141s Setting up r-cran-rcpp (1.0.14-1) ...
141s Setting up r-cran-rlang (1.1.5-1) ...
141s Setting up littler (0.3.20-2) ...
141s Setting up r-cran-withr (3.0.2+dfsg-1) ...
141s Setting up r-cran-fansi (1.0.5-1) ...
141s Setting up r-cran-mass (7.3-64-1) ...
141s Setting up r-cran-glue (1.8.0-1) ...
141s Setting up r-cran-cli (3.6.3-1) ...
141s Setting up r-cran-lifecycle (1.0.4+dfsg-1) ...
141s Setting up r-cran-pkgconfig (2.0.3-2build1) ...
141s Setting up r-cran-utf8 (1.2.4-1) ...
141s Setting up r-cran-colorspace (2.1-1+dfsg-1) ...
141s Setting up texlive-latex-base (2024.20241115-1) ...
141s Setting up r-cran-plyr (1.8.9-1) ...
141s Setting up r-cran-rcolorbrewer (1.1-3-1build1) ...
141s Setting up r-cran-isoband (0.2.7-1) ...
141s Setting up r-cran-gtable (0.3.6+dfsg-1) ...
141s Setting up r-cran-matrix (1.7-2-1) ...
141s Setting up r-cran-mgcv (1.9-1-1) ...
141s Setting up r-cran-vctrs (0.6.5-1) ...
141s Setting up r-cran-pillar (1.10.1+dfsg-1) ...
141s Setting up r-cran-reshape (0.8.9-1) ...
141s Setting up r-cran-munsell (0.5.1-1) ...
141s Setting up r-cran-tibble (3.2.1+dfsg-3) ...
141s Setting up r-cran-gridextra (2.3-3build1) ...
141s Setting up r-cran-scales (1.3.0-1) ...
141s Setting up r-cran-ggplot2 (3.5.1+dfsg-1) ...
141s Processing triggers for libc-bin (2.40-4ubuntu1) ...
141s Processing triggers for man-db (2.13.0-1) ...
142s Processing triggers for install-info (7.1.1-1) ...
142s Processing triggers for ca-certificates-java (20240118) ...
142s Adding debian:ACCVRAIZ1.pem
142s Adding debian:AC_RAIZ_FNMT-RCM.pem
142s Adding debian:AC_RAIZ_FNMT-RCM_SERVIDORES_SEGUROS.pem
142s Adding debian:ANF_Secure_Server_Root_CA.pem
142s Adding debian:Actalis_Authentication_Root_CA.pem
142s Adding debian:AffirmTrust_Commercial.pem
142s Adding debian:AffirmTrust_Networking.pem
142s Adding debian:AffirmTrust_Premium.pem
142s Adding debian:AffirmTrust_Premium_ECC.pem
143s Adding debian:Amazon_Root_CA_1.pem
143s Adding debian:Amazon_Root_CA_2.pem
143s Adding debian:Amazon_Root_CA_3.pem
143s Adding debian:Amazon_Root_CA_4.pem
143s Adding debian:Atos_TrustedRoot_2011.pem
143s Adding debian:Atos_TrustedRoot_Root_CA_ECC_TLS_2021.pem
143s Adding debian:Atos_TrustedRoot_Root_CA_RSA_TLS_2021.pem
143s Adding debian:Autoridad_de_Certificacion_Firmaprofesional_CIF_A62634068.pem
143s Adding debian:BJCA_Global_Root_CA1.pem
143s Adding debian:BJCA_Global_Root_CA2.pem
143s Adding debian:Baltimore_CyberTrust_Root.pem
143s Adding debian:Buypass_Class_2_Root_CA.pem
143s Adding debian:Buypass_Class_3_Root_CA.pem
143s Adding debian:CA_Disig_Root_R2.pem
143s Adding debian:CFCA_EV_ROOT.pem
143s Adding debian:COMODO_Certification_Authority.pem
143s Adding debian:COMODO_ECC_Certification_Authority.pem
143s Adding debian:COMODO_RSA_Certification_Authority.pem
143s Adding debian:Certainly_Root_E1.pem
143s Adding debian:Certainly_Root_R1.pem
143s Adding debian:Certigna.pem
143s Adding debian:Certigna_Root_CA.pem
143s Adding debian:Certum_EC-384_CA.pem
143s Adding debian:Certum_Trusted_Network_CA.pem
143s Adding debian:Certum_Trusted_Network_CA_2.pem
143s Adding debian:Certum_Trusted_Root_CA.pem
143s Adding debian:CommScope_Public_Trust_ECC_Root-01.pem
143s Adding debian:CommScope_Public_Trust_ECC_Root-02.pem
143s Adding debian:CommScope_Public_Trust_RSA_Root-01.pem
143s Adding debian:CommScope_Public_Trust_RSA_Root-02.pem
143s Adding debian:Comodo_AAA_Services_root.pem
143s Adding debian:D-TRUST_BR_Root_CA_1_2020.pem
143s Adding debian:D-TRUST_EV_Root_CA_1_2020.pem
143s Adding debian:D-TRUST_Root_Class_3_CA_2_2009.pem
143s Adding debian:D-TRUST_Root_Class_3_CA_2_EV_2009.pem
143s Adding debian:DigiCert_Assured_ID_Root_CA.pem
143s Adding debian:DigiCert_Assured_ID_Root_G2.pem
143s Adding debian:DigiCert_Assured_ID_Root_G3.pem
143s Adding debian:DigiCert_Global_Root_CA.pem
143s Adding debian:DigiCert_Global_Root_G2.pem
143s Adding debian:DigiCert_Global_Root_G3.pem
143s Adding debian:DigiCert_High_Assurance_EV_Root_CA.pem
143s Adding debian:DigiCert_TLS_ECC_P384_Root_G5.pem
143s Adding debian:DigiCert_TLS_RSA4096_Root_G5.pem
143s Adding debian:DigiCert_Trusted_Root_G4.pem
143s Adding debian:Entrust.net_Premium_2048_Secure_Server_CA.pem
143s Adding debian:Entrust_Root_Certification_Authority.pem
143s Adding debian:Entrust_Root_Certification_Authority_-_EC1.pem
143s Adding debian:Entrust_Root_Certification_Authority_-_G2.pem
143s Adding debian:Entrust_Root_Certification_Authority_-_G4.pem
143s Adding debian:FIRMAPROFESIONAL_CA_ROOT-A_WEB.pem
143s Adding debian:GDCA_TrustAUTH_R5_ROOT.pem
143s Adding debian:GLOBALTRUST_2020.pem
143s Adding debian:GTS_Root_R1.pem
143s Adding debian:GTS_Root_R2.pem
143s Adding debian:GTS_Root_R3.pem
143s Adding debian:GTS_Root_R4.pem
143s Adding debian:GlobalSign_ECC_Root_CA_-_R4.pem
143s Adding debian:GlobalSign_ECC_Root_CA_-_R5.pem
143s Adding debian:GlobalSign_Root_CA.pem
143s Adding debian:GlobalSign_Root_CA_-_R3.pem
143s Adding debian:GlobalSign_Root_CA_-_R6.pem
143s Adding debian:GlobalSign_Root_E46.pem
143s Adding debian:GlobalSign_Root_R46.pem
143s Adding debian:Go_Daddy_Class_2_CA.pem
143s Adding debian:Go_Daddy_Root_Certificate_Authority_-_G2.pem
143s Adding debian:HARICA_TLS_ECC_Root_CA_2021.pem
143s Adding debian:HARICA_TLS_RSA_Root_CA_2021.pem
143s Adding debian:Hellenic_Academic_and_Research_Institutions_ECC_RootCA_2015.pem
143s Adding debian:Hellenic_Academic_and_Research_Institutions_RootCA_2015.pem
143s Adding debian:HiPKI_Root_CA_-_G1.pem
143s Adding debian:Hongkong_Post_Root_CA_3.pem
143s Adding debian:ISRG_Root_X1.pem
143s Adding debian:ISRG_Root_X2.pem
143s Adding debian:IdenTrust_Commercial_Root_CA_1.pem
143s Adding debian:IdenTrust_Public_Sector_Root_CA_1.pem
143s Adding debian:Izenpe.com.pem
143s Adding debian:Microsec_e-Szigno_Root_CA_2009.pem
143s Adding debian:Microsoft_ECC_Root_Certificate_Authority_2017.pem
143s Adding debian:Microsoft_RSA_Root_Certificate_Authority_2017.pem
143s Adding debian:NAVER_Global_Root_Certification_Authority.pem
143s Adding debian:NetLock_Arany_=Class_Gold=_Főtanúsítvány.pem
143s Adding debian:OISTE_WISeKey_Global_Root_GB_CA.pem
143s Adding debian:OISTE_WISeKey_Global_Root_GC_CA.pem
143s Adding debian:QuoVadis_Root_CA_1_G3.pem
143s Adding debian:QuoVadis_Root_CA_2.pem
143s Adding debian:QuoVadis_Root_CA_2_G3.pem
143s Adding debian:QuoVadis_Root_CA_3.pem
143s Adding debian:QuoVadis_Root_CA_3_G3.pem
143s Adding debian:SSL.com_EV_Root_Certification_Authority_ECC.pem
143s Adding debian:SSL.com_EV_Root_Certification_Authority_RSA_R2.pem
143s Adding debian:SSL.com_Root_Certification_Authority_ECC.pem
143s Adding debian:SSL.com_Root_Certification_Authority_RSA.pem
143s Adding debian:SSL.com_TLS_ECC_Root_CA_2022.pem
143s Adding debian:SSL.com_TLS_RSA_Root_CA_2022.pem
143s Adding debian:SZAFIR_ROOT_CA2.pem
143s Adding debian:Sectigo_Public_Server_Authentication_Root_E46.pem
143s Adding debian:Sectigo_Public_Server_Authentication_Root_R46.pem
143s Adding debian:SecureSign_RootCA11.pem
143s Adding debian:SecureSign_Root_CA12.pem
143s Adding debian:SecureSign_Root_CA14.pem
143s Adding debian:SecureSign_Root_CA15.pem
143s Adding debian:SecureTrust_CA.pem
143s Adding debian:Secure_Global_CA.pem
143s Adding debian:Security_Communication_ECC_RootCA1.pem
143s Adding debian:Security_Communication_RootCA2.pem
143s Adding debian:Security_Communication_RootCA3.pem
143s Adding debian:Starfield_Class_2_CA.pem
143s Adding debian:Starfield_Root_Certificate_Authority_-_G2.pem
143s Adding debian:Starfield_Services_Root_Certificate_Authority_-_G2.pem
143s Adding debian:SwissSign_Gold_CA_-_G2.pem
143s Adding debian:SwissSign_Silver_CA_-_G2.pem
143s Adding debian:T-TeleSec_GlobalRoot_Class_2.pem
143s Adding debian:T-TeleSec_GlobalRoot_Class_3.pem
143s Adding debian:TUBITAK_Kamu_SM_SSL_Kok_Sertifikasi_-_Surum_1.pem
143s Adding debian:TWCA_CYBER_Root_CA.pem
143s Adding debian:TWCA_Global_Root_CA.pem
143s Adding debian:TWCA_Root_Certification_Authority.pem
143s Adding debian:Telekom_Security_TLS_ECC_Root_2020.pem
143s Adding debian:Telekom_Security_TLS_RSA_Root_2023.pem
143s Adding debian:TeliaSonera_Root_CA_v1.pem
143s Adding debian:Telia_Root_CA_v2.pem
143s Adding debian:TrustAsia_Global_Root_CA_G3.pem
143s Adding debian:TrustAsia_Global_Root_CA_G4.pem
143s Adding debian:Trustwave_Global_Certification_Authority.pem
143s Adding debian:Trustwave_Global_ECC_P256_Certification_Authority.pem
143s Adding debian:Trustwave_Global_ECC_P384_Certification_Authority.pem
143s Adding debian:TunTrust_Root_CA.pem
143s Adding debian:UCA_Extended_Validation_Root.pem
143s Adding debian:UCA_Global_G2_Root.pem
143s Adding debian:USERTrust_ECC_Certification_Authority.pem
143s Adding debian:USERTrust_RSA_Certification_Authority.pem
143s Adding debian:XRamp_Global_CA_Root.pem
143s Adding debian:certSIGN_ROOT_CA.pem
143s Adding debian:certSIGN_Root_CA_G2.pem
143s Adding debian:e-Szigno_Root_CA_2017.pem
143s Adding debian:ePKI_Root_Certification_Authority.pem
143s Adding debian:emSign_ECC_Root_CA_-_C3.pem
143s Adding debian:emSign_ECC_Root_CA_-_G3.pem
143s Adding debian:emSign_Root_CA_-_C1.pem
143s Adding debian:emSign_Root_CA_-_G1.pem
143s Adding debian:vTrus_ECC_Root_CA.pem
143s Adding debian:vTrus_Root_CA.pem
143s done.
143s Setting up default-jre-headless (2:1.21-76) ...
143s Setting up nanook (1.33+dfsg-6) ...
143s Processing triggers for tex-common (6.18) ...
143s Running updmap-sys. This may take some time... done.
143s Running mktexlsr /var/lib/texmf ... done.
143s Building format(s) --all.
179s 	This may take some time... done.
180s autopkgtest [11:50:19]: test run-unit-test: [-----------------------
189s 
189s NanoOK v1.33
189s 
189s Comments/bugs to: richard.leggett@earlham.ac.uk
189s Follow NanoOK on twitter: @NanoOK_Software
189s 
189s Scripts dir: /usr/share/nanook/bin
189s 
189s Checking dependencies
189s *** ERROR: Couldn't find Rscript - is R installed? ***
189s pdfTeX 3.141592653-2.6-1.40.26 (TeX Live 2025/dev/Debian)
189s h5dump: Version 1.14.5
189s 
189s Making directory /tmp/autopkgtest.z7kNyg/autopkgtest_tmp/data/nanook_ecoli_500/N79596_dh10b_8kb_11022015/fasta
189s Checking FAST5 directory structure...
189s   Using pass/fail dirs: yes
189s       Using batch dirs: no
189s         Using barcodes: no
189s 
192s 
Processing [                                                  ] 0/1
Processing [==================================================] 1/1
Processing [==================================================] 1/1
Processing [==================================================] 1/1
Processing [==================================================] 1/1
Processing [==================================================] 1/1
Processing [==================================================] 1/1
192s 
192s DONE
192s 
192s NanoOK v1.33
192s 
192s Comments/bugs to: richard.leggett@earlham.ac.uk
192s Follow NanoOK on twitter: @NanoOK_Software
192s 
192s Scripts dir: /usr/share/nanook/bin
192s 
192s Checking dependencies
192s *** ERROR: Couldn't find Rscript - is R installed? ***
192s pdfTeX 3.141592653-2.6-1.40.26 (TeX Live 2025/dev/Debian)
192s h5dump: Version 1.14.5
192s 
192s Making directory /tmp/autopkgtest.z7kNyg/autopkgtest_tmp/data/nanook_ecoli_500/N79596_dh10b_8kb_11022015/last
192s Making directory /tmp/autopkgtest.z7kNyg/autopkgtest_tmp/data/nanook_ecoli_500/N79596_dh10b_8kb_11022015/logs/last
192s Checking FASTA/Q directory structure...
192s   Using pass/fail dirs: yes
192s       Using batch dirs: no
192s         Using barcodes: no
192s 
195s 
Processing [                                                  ] 0/3
Processing [================                                  ] 1/3
Processing [==================================================] 3/3
Processing [==================================================] 3/3
Processing [==================================================] 3/3
Processing [==================================================] 3/3
Processing [==================================================] 3/3
195s 
195s DONE
195s 
195s NanoOK v1.33
195s 
195s Comments/bugs to: richard.leggett@earlham.ac.uk
195s Follow NanoOK on twitter: @NanoOK_Software
195s 
195s Scripts dir: /usr/share/nanook/bin
195s 
195s Checking dependencies
195s *** ERROR: Couldn't find Rscript - is R installed? ***
195s pdfTeX 3.141592653-2.6-1.40.26 (TeX Live 2025/dev/Debian)
195s h5dump: Version 1.14.5
195s 
195s Checking FASTA/Q directory structure...
195s   Using pass/fail dirs: yes
195s       Using batch dirs: no
195s         Using barcodes: no
195s 
195s Using .sizes file ecoli_dh10b_cs.fasta.sizes
195s Note: if you have changed the reference file, you need to delete the .sizes file and re-run.
195s 
195s Reading reference sizes and making directories
195s 	Escherichia_coli	4686137
195s 	Control_sequence	3560
195s 
195s Calculating reference GC
195s 	Escherichia_coli
196s 	Control_sequence
196s 
196s Parsing Template
196s 
[==================================================] 1/1
196s 
196s Error: unable to find any Template alignments to process.
196s Common reasons for this:
196s 1. Failure to index the reference with the alignment tool, resulting in alignment files of 0 bytes
196s 2. Wrong reference specified to the align stage, resulting in no alignments
196s 3. When indexing with LAST, the output prefix needs to be the same as the reference FASTA file, minus the .fasta extension
196s    e.g. lastdb -Q 0 referencename referencename.fasta
196s 
196s autopkgtest [11:50:35]: test run-unit-test: -----------------------]
197s autopkgtest [11:50:36]: test run-unit-test:  - - - - - - - - - - results - - - - - - - - - -
197s run-unit-test        FAIL non-zero exit status 1
197s autopkgtest [11:50:36]: @@@@@@@@@@@@@@@@@@@@ summary
197s run-unit-test        FAIL non-zero exit status 1
215s nova [W] Using flock in prodstack6-s390x
215s Creating nova instance adt-plucky-s390x-nanook-20250219-114719-juju-7f2275-prod-proposed-migration-environment-20-05a8a3dc-31f7-405a-87e3-d935fa35fad4 from image adt/ubuntu-plucky-s390x-server-20250219.img (UUID 7af5aa59-4155-4177-a560-02c7dd963d23)...
215s nova [W] Timed out waiting for a423e086-5624-4d22-8990-6bd6ae171ec4 to get deleted.