0s autopkgtest [20:00:40]: starting date and time: 2024-11-15 20:00:40+0000
  0s autopkgtest [20:00:40]: git checkout: 6f3be7a8 Fix armhf LXD image generation for plucky
  0s autopkgtest [20:00:40]: host juju-7f2275-prod-proposed-migration-environment-15; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.p55j1ta_/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:python-pybedtools --apt-upgrade mirtop --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=python-pybedtools/0.10.0-2 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest-s390x --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-15@bos03-s390x-14.secgroup --name adt-plucky-s390x-mirtop-20241115-200040-juju-7f2275-prod-proposed-migration-environment-15-2514c218-fae8-46e5-92d8-23a0e2d36e2b --image adt/ubuntu-plucky-s390x-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-15 --net-id=net_prod-proposed-migration-s390x -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,keyserver.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/
102s autopkgtest [20:02:22]: testbed dpkg architecture: s390x
102s autopkgtest [20:02:22]: testbed apt version: 2.9.8
102s autopkgtest [20:02:22]: @@@@@@@@@@@@@@@@@@@@ test bed setup
103s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease [73.9 kB]
103s Get:2 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse Sources [15.5 kB]
103s Get:3 http://ftpmaster.internal/ubuntu plucky-proposed/main Sources [92.2 kB]
103s Get:4 http://ftpmaster.internal/ubuntu plucky-proposed/universe Sources [1043 kB]
103s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/restricted Sources [7016 B]
103s Get:6 http://ftpmaster.internal/ubuntu plucky-proposed/main s390x Packages [150 kB]
103s Get:7 http://ftpmaster.internal/ubuntu plucky-proposed/universe s390x Packages [747 kB]
104s Get:8 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse s390x Packages [4940 B]
104s Fetched 2133 kB in 1s (2531 kB/s)
104s Reading package lists...
106s Reading package lists...
106s Building dependency tree...
106s Reading state information...
106s Calculating upgrade...
106s The following NEW packages will be installed:
106s   libassuan9
106s The following packages will be upgraded:
106s   libgpgme11t64 libseccomp2 python3-cffi-backend python3-markupsafe
106s 4 upgraded, 1 newly installed, 0 to remove and 0 not upgraded.
106s Need to get 352 kB of archives.
106s After this operation, 352 kB of additional disk space will be used.
106s Get:1 http://ftpmaster.internal/ubuntu plucky/main s390x libseccomp2 s390x 2.5.5-1ubuntu5 [52.1 kB]
106s Get:2 http://ftpmaster.internal/ubuntu plucky/main s390x python3-cffi-backend s390x 1.17.1-2build1 [91.3 kB]
106s Get:3 http://ftpmaster.internal/ubuntu plucky/main s390x libassuan9 s390x 3.0.1-2 [41.3 kB]
106s Get:4 http://ftpmaster.internal/ubuntu plucky/main s390x libgpgme11t64 s390x 1.24.0-2ubuntu1 [154 kB]
106s Get:5 http://ftpmaster.internal/ubuntu plucky/main s390x python3-markupsafe s390x 2.1.5-1build3 [12.9 kB]
107s Fetched 352 kB in 0s (757 kB/s)
107s (Reading database ... 
(Reading database ... 5%
(Reading database ... 10%
(Reading database ... 15%
(Reading database ... 20%
(Reading database ... 25%
(Reading database ... 30%
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(Reading database ... 40%
(Reading database ... 45%
(Reading database ... 50%
(Reading database ... 55%
(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 55517 files and directories currently installed.)
107s Preparing to unpack .../libseccomp2_2.5.5-1ubuntu5_s390x.deb ...
107s Unpacking libseccomp2:s390x (2.5.5-1ubuntu5) over (2.5.5-1ubuntu4) ...
107s Setting up libseccomp2:s390x (2.5.5-1ubuntu5) ...
107s (Reading database ... 
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(Reading database ... 55%
(Reading database ... 60%
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(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 55517 files and directories currently installed.)
107s Preparing to unpack .../python3-cffi-backend_1.17.1-2build1_s390x.deb ...
107s Unpacking python3-cffi-backend:s390x (1.17.1-2build1) over (1.17.1-2) ...
107s Selecting previously unselected package libassuan9:s390x.
107s Preparing to unpack .../libassuan9_3.0.1-2_s390x.deb ...
107s Unpacking libassuan9:s390x (3.0.1-2) ...
107s Preparing to unpack .../libgpgme11t64_1.24.0-2ubuntu1_s390x.deb ...
107s Unpacking libgpgme11t64:s390x (1.24.0-2ubuntu1) over (1.23.2-5ubuntu4) ...
107s Preparing to unpack .../python3-markupsafe_2.1.5-1build3_s390x.deb ...
107s Unpacking python3-markupsafe (2.1.5-1build3) over (2.1.5-1build2) ...
107s Setting up python3-markupsafe (2.1.5-1build3) ...
107s Setting up libassuan9:s390x (3.0.1-2) ...
107s Setting up libgpgme11t64:s390x (1.24.0-2ubuntu1) ...
107s Setting up python3-cffi-backend:s390x (1.17.1-2build1) ...
107s Processing triggers for libc-bin (2.40-1ubuntu3) ...
107s Reading package lists...
107s Building dependency tree...
107s Reading state information...
107s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
108s Hit:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease
108s Hit:2 http://ftpmaster.internal/ubuntu plucky InRelease
108s Hit:3 http://ftpmaster.internal/ubuntu plucky-updates InRelease
108s Hit:4 http://ftpmaster.internal/ubuntu plucky-security InRelease
109s Reading package lists...
109s Reading package lists...
109s Building dependency tree...
109s Reading state information...
109s Calculating upgrade...
109s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
109s Reading package lists...
109s Building dependency tree...
109s Reading state information...
109s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
112s autopkgtest [20:02:32]: testbed running kernel: Linux 6.11.0-8-generic #8-Ubuntu SMP Mon Sep 16 12:49:35 UTC 2024
112s autopkgtest [20:02:32]: @@@@@@@@@@@@@@@@@@@@ apt-source mirtop
114s Get:1 http://ftpmaster.internal/ubuntu plucky/universe mirtop 0.4.28-1 (dsc) [2340 B]
114s Get:2 http://ftpmaster.internal/ubuntu plucky/universe mirtop 0.4.28-1 (tar) [718 kB]
114s Get:3 http://ftpmaster.internal/ubuntu plucky/universe mirtop 0.4.28-1 (diff) [10.4 kB]
114s gpgv: Signature made Sat Oct 12 13:35:08 2024 UTC
114s gpgv:                using RSA key 8F6DE104377F3B11E741748731F3144544A1741A
114s gpgv:                issuer "tchet@debian.org"
114s gpgv: Can't check signature: No public key
114s dpkg-source: warning: cannot verify inline signature for ./mirtop_0.4.28-1.dsc: no acceptable signature found
114s autopkgtest [20:02:34]: testing package mirtop version 0.4.28-1
114s autopkgtest [20:02:34]: build not needed
115s autopkgtest [20:02:35]: test run-unit-test: preparing testbed
116s Reading package lists...
116s Building dependency tree...
116s Reading state information...
117s Starting pkgProblemResolver with broken count: 1
117s Starting 2 pkgProblemResolver with broken count: 1
117s Investigating (0) python3-mirtop:s390x < none -> 0.4.28-1 @un puN Ib >
117s Broken python3-mirtop:s390x Depends on python3-six:s390x < none | 1.16.0-7 @un uH >
117s   Considering python3-six:s390x 1 as a solution to python3-mirtop:s390x 1
117s   Re-Instated python3-six:s390x
117s Broken python3-mirtop:s390x Depends on python3-pysam:s390x < none @un H >
117s Broken python3-mirtop:s390x Depends on python3-pybedtools:s390x < none @un H >
117s Broken python3-mirtop:s390x Depends on python3-pandas:s390x < none | 2.2.3+dfsg-5 @un uH >
117s   Considering python3-pandas:s390x 1 as a solution to python3-mirtop:s390x 1
117s   Re-Instated python3-dateutil:s390x
117s   Re-Instated libblas3:s390x
117s   Re-Instated libgfortran5:s390x
117s   Re-Instated liblapack3:s390x
117s   Re-Instated python3-numpy:s390x
117s   Re-Instated python3-tz:s390x
117s   Re-Instated python3-pandas-lib:s390x
117s   Re-Instated python3-pandas:s390x
117s Broken python3-mirtop:s390x Depends on python3-biopython:s390x < none | 1.84+dfsg-4 @un uH >
117s   Considering python3-biopython:s390x 1 as a solution to python3-mirtop:s390x 1
117s   Re-Instated libfreetype6:s390x
117s   Re-Instated libimagequant0:s390x
117s   Re-Instated libjpeg-turbo8:s390x
117s   Re-Instated libjpeg8:s390x
117s   Re-Instated liblcms2-2:s390x
117s   Re-Instated libopenjp2-7:s390x
117s   Re-Instated libgraphite2-3:s390x
117s   Re-Instated libharfbuzz0b:s390x
117s   Re-Instated libraqm0:s390x
117s   Re-Instated libjbig0:s390x
117s   Re-Instated libsharpyuv0:s390x
117s   Re-Instated libwebp7:s390x
117s   Re-Instated libtiff6:s390x
117s   Re-Instated libwebpdemux2:s390x
117s   Re-Instated libwebpmux3:s390x
117s   Re-Instated python3-pil:s390x
117s   Re-Instated fonts-dejavu-mono:s390x
117s   Re-Instated fonts-dejavu-core:s390x
117s   Re-Instated fontconfig-config:s390x
117s   Re-Instated libfontconfig1:s390x
117s   Re-Instated libpixman-1-0:s390x
117s   Re-Instated libxcb-render0:s390x
117s   Re-Instated libxcb-shm0:s390x
117s   Re-Instated libxrender1:s390x
117s   Re-Instated libcairo2:s390x
117s   Re-Instated python3-cairo:s390x
117s   Re-Instated python3-freetype:s390x
117s   Re-Instated python3-rlpycairo:s390x
117s   Re-Instated libfontenc1:s390x
117s   Re-Instated x11-common:s390x
117s   Re-Instated xfonts-encodings:s390x
117s   Re-Instated xfonts-utils:s390x
117s   Re-Instated fonts-urw-base35:s390x
117s   Re-Instated python3-reportlab:s390x
117s   Re-Instated sgml-base:s390x
117s   Re-Instated xml-core:s390x
117s   Re-Instated w3c-sgml-lib:s390x
117s   Re-Instated python3-biopython:s390x
117s Done
117s Some packages could not be installed. This may mean that you have
117s requested an impossible situation or if you are using the unstable
117s distribution that some required packages have not yet been created
117s or been moved out of Incoming.
117s The following information may help to resolve the situation:
117s 
117s The following packages have unmet dependencies:
117s  python3-mirtop : Depends: python3-pysam but it is not installable
117s                   Depends: python3-pybedtools but it is not installable
117s E: Unable to correct problems, you have held broken packages.
117s autopkgtest: WARNING: Test dependencies are unsatisfiable with using apt pinning. Retrying with using all packages from plucky-proposed
117s Reading package lists...
117s Building dependency tree...
117s Reading state information...
118s Starting pkgProblemResolver with broken count: 1
118s autopkgtest: WARNING: Test dependencies are unsatisfiable - calling apt install on test deps directly for further data about failing dependencies in test logs
118s Starting 2 pkgProblemResolver with broken count: 1
118s Investigating (0) python3-mirtop:s390x < none -> 0.4.28-1 @un puN Ib >
118s Broken python3-mirtop:s390x Depends on python3-six:s390x < none | 1.16.0-7 @un uH >
118s   Considering python3-six:s390x 1 as a solution to python3-mirtop:s390x 1
118s   Re-Instated python3-six:s390x
118s Broken python3-mirtop:s390x Depends on python3-pysam:s390x < none @un H >
118s Broken python3-mirtop:s390x Depends on python3-pybedtools:s390x < none @un H >
118s Broken python3-mirtop:s390x Depends on python3-pandas:s390x < none | 2.2.3+dfsg-5ubuntu1 @un uH >
118s   Considering python3-pandas:s390x 1 as a solution to python3-mirtop:s390x 1
118s   Re-Instated python3-dateutil:s390x
118s   Re-Instated libblas3:s390x
118s   Re-Instated libgfortran5:s390x
118s   Re-Instated liblapack3:s390x
118s   Re-Instated python3-numpy:s390x
118s   Re-Instated python3-tz:s390x
118s   Re-Instated python3-pandas-lib:s390x
118s   Re-Instated python3-pandas:s390x
118s Broken python3-mirtop:s390x Depends on python3-biopython:s390x < none | 1.84+dfsg-4build1 @un uH >
118s   Considering python3-biopython:s390x 1 as a solution to python3-mirtop:s390x 1
118s   Re-Instated libfreetype6:s390x
118s   Re-Instated libimagequant0:s390x
118s   Re-Instated libjpeg-turbo8:s390x
118s   Re-Instated libjpeg8:s390x
118s   Re-Instated liblcms2-2:s390x
118s   Re-Instated libopenjp2-7:s390x
118s   Re-Instated libgraphite2-3:s390x
118s   Re-Instated libharfbuzz0b:s390x
118s   Re-Instated libraqm0:s390x
118s   Re-Instated libjbig0:s390x
118s   Re-Instated libsharpyuv0:s390x
118s   Re-Instated libwebp7:s390x
118s   Re-Instated libtiff6:s390x
118s   Re-Instated libwebpdemux2:s390x
118s   Re-Instated libwebpmux3:s390x
118s   Re-Instated python3-pil:s390x
118s   Re-Instated fonts-dejavu-mono:s390x
118s   Re-Instated fonts-dejavu-core:s390x
118s   Re-Instated fontconfig-config:s390x
118s   Re-Instated libfontconfig1:s390x
118s   Re-Instated libpixman-1-0:s390x
118s   Re-Instated libxcb-render0:s390x
118s   Re-Instated libxcb-shm0:s390x
118s   Re-Instated libxrender1:s390x
118s   Re-Instated libcairo2:s390x
118s   Re-Instated python3-cairo:s390x
118s   Re-Instated python3-freetype:s390x
118s   Re-Instated python3-rlpycairo:s390x
118s   Re-Instated libfontenc1:s390x
118s   Re-Instated x11-common:s390x
118s   Re-Instated xfonts-encodings:s390x
118s   Re-Instated xfonts-utils:s390x
118s   Re-Instated fonts-urw-base35:s390x
118s   Re-Instated python3-reportlab:s390x
118s   Re-Instated sgml-base:s390x
118s   Re-Instated xml-core:s390x
118s   Re-Instated w3c-sgml-lib:s390x
118s   Re-Instated python3-biopython:s390x
118s Done
118s Some packages could not be installed. This may mean that you have
118s requested an impossible situation or if you are using the unstable
118s distribution that some required packages have not yet been created
118s or been moved out of Incoming.
118s The following information may help to resolve the situation:
118s 
118s The following packages have unmet dependencies:
118s  python3-mirtop : Depends: python3-pysam but it is not installable
118s                   Depends: python3-pybedtools but it is not installable
118s E: Unable to correct problems, you have held broken packages.
118s Reading package lists...
118s Building dependency tree...
118s Reading state information...
118s Starting pkgProblemResolver with broken count: 1
118s Starting 2 pkgProblemResolver with broken count: 1
118s Investigating (0) python3-mirtop:s390x < none -> 0.4.28-1 @un puN Ib >
118s Broken python3-mirtop:s390x Depends on python3-six:s390x < none | 1.16.0-7 @un uH >
118s   Considering python3-six:s390x 1 as a solution to python3-mirtop:s390x 10000
118s   Re-Instated python3-six:s390x
118s Broken python3-mirtop:s390x Depends on python3-pysam:s390x < none @un H >
118s Broken python3-mirtop:s390x Depends on python3-pybedtools:s390x < none @un H >
118s Broken python3-mirtop:s390x Depends on python3-pandas:s390x < none | 2.2.3+dfsg-5ubuntu1 @un uH >
118s   Considering python3-pandas:s390x 1 as a solution to python3-mirtop:s390x 10000
118s   Re-Instated python3-dateutil:s390x
118s   Re-Instated libblas3:s390x
118s   Re-Instated libgfortran5:s390x
118s   Re-Instated liblapack3:s390x
118s   Re-Instated python3-numpy:s390x
118s   Re-Instated python3-tz:s390x
118s   Re-Instated python3-pandas-lib:s390x
118s   Re-Instated python3-pandas:s390x
118s Broken python3-mirtop:s390x Depends on python3-biopython:s390x < none | 1.84+dfsg-4build1 @un uH >
118s   Considering python3-biopython:s390x 1 as a solution to python3-mirtop:s390x 10000
118s   Re-Instated libfreetype6:s390x
118s   Re-Instated libimagequant0:s390x
118s   Re-Instated libjpeg-turbo8:s390x
118s   Re-Instated libjpeg8:s390x
118s   Re-Instated liblcms2-2:s390x
118s   Re-Instated libopenjp2-7:s390x
118s   Re-Instated libgraphite2-3:s390x
118s   Re-Instated libharfbuzz0b:s390x
118s   Re-Instated libraqm0:s390x
118s   Re-Instated libjbig0:s390x
118s   Re-Instated libsharpyuv0:s390x
118s   Re-Instated libwebp7:s390x
118s   Re-Instated libtiff6:s390x
118s   Re-Instated libwebpdemux2:s390x
118s   Re-Instated libwebpmux3:s390x
118s   Re-Instated python3-pil:s390x
118s   Re-Instated fonts-dejavu-mono:s390x
118s   Re-Instated fonts-dejavu-core:s390x
118s   Re-Instated fontconfig-config:s390x
118s   Re-Instated libfontconfig1:s390x
118s   Re-Instated libpixman-1-0:s390x
118s   Re-Instated libxcb-render0:s390x
118s   Re-Instated libxcb-shm0:s390x
118s   Re-Instated libxrender1:s390x
118s   Re-Instated libcairo2:s390x
118s   Re-Instated python3-cairo:s390x
118s   Re-Instated python3-freetype:s390x
118s   Re-Instated python3-rlpycairo:s390x
118s   Re-Instated libfontenc1:s390x
118s   Re-Instated x11-common:s390x
118s   Re-Instated xfonts-encodings:s390x
118s   Re-Instated xfonts-utils:s390x
118s   Re-Instated fonts-urw-base35:s390x
118s   Re-Instated python3-reportlab:s390x
118s   Re-Instated sgml-base:s390x
118s   Re-Instated xml-core:s390x
118s   Re-Instated w3c-sgml-lib:s390x
118s   Re-Instated python3-biopython:s390x
118s Done
118s Some packages could not be installed. This may mean that you have
118s requested an impossible situation or if you are using the unstable
118s distribution that some required packages have not yet been created
118s or been moved out of Incoming.
118s The following information may help to resolve the situation:
118s 
118s The following packages have unmet dependencies:
118s  python3-mirtop : Depends: python3-pysam but it is not installable
118s                   Depends: python3-pybedtools but it is not installable
118s E: Unable to correct problems, you have held broken packages.
118s run-unit-test        FAIL badpkg
118s blame: mirtop
118s badpkg: Test dependencies are unsatisfiable. A common reason is that your testbed is out of date with respect to the archive, and you need to use a current testbed or run apt-get update or use -U.
118s autopkgtest [20:02:38]: test autodep8-python3: preparing testbed
224s autopkgtest [20:04:24]: testbed dpkg architecture: s390x
224s autopkgtest [20:04:24]: testbed apt version: 2.9.8
224s autopkgtest [20:04:24]: @@@@@@@@@@@@@@@@@@@@ test bed setup
225s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease [73.9 kB]
225s Get:2 http://ftpmaster.internal/ubuntu plucky-proposed/universe Sources [1043 kB]
225s Get:3 http://ftpmaster.internal/ubuntu plucky-proposed/restricted Sources [7016 B]
225s Get:4 http://ftpmaster.internal/ubuntu plucky-proposed/main Sources [92.2 kB]
225s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse Sources [15.5 kB]
225s Get:6 http://ftpmaster.internal/ubuntu plucky-proposed/main s390x Packages [150 kB]
225s Get:7 http://ftpmaster.internal/ubuntu plucky-proposed/universe s390x Packages [747 kB]
226s Get:8 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse s390x Packages [4940 B]
226s Fetched 2133 kB in 1s (2352 kB/s)
226s Reading package lists...
228s Reading package lists...
228s Building dependency tree...
228s Reading state information...
228s Calculating upgrade...
228s The following NEW packages will be installed:
228s   libassuan9
228s The following packages will be upgraded:
228s   libgpgme11t64 libseccomp2 python3-cffi-backend python3-markupsafe
228s 4 upgraded, 1 newly installed, 0 to remove and 0 not upgraded.
228s Need to get 352 kB of archives.
228s After this operation, 352 kB of additional disk space will be used.
228s Get:1 http://ftpmaster.internal/ubuntu plucky/main s390x libseccomp2 s390x 2.5.5-1ubuntu5 [52.1 kB]
229s Get:2 http://ftpmaster.internal/ubuntu plucky/main s390x python3-cffi-backend s390x 1.17.1-2build1 [91.3 kB]
229s Get:3 http://ftpmaster.internal/ubuntu plucky/main s390x libassuan9 s390x 3.0.1-2 [41.3 kB]
229s Get:4 http://ftpmaster.internal/ubuntu plucky/main s390x libgpgme11t64 s390x 1.24.0-2ubuntu1 [154 kB]
229s Get:5 http://ftpmaster.internal/ubuntu plucky/main s390x python3-markupsafe s390x 2.1.5-1build3 [12.9 kB]
229s Fetched 352 kB in 1s (684 kB/s)
229s (Reading database ... 
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(Reading database ... 50%
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(Reading database ... 75%
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(Reading database ... 85%
(Reading database ... 90%
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(Reading database ... 55517 files and directories currently installed.)
229s Preparing to unpack .../libseccomp2_2.5.5-1ubuntu5_s390x.deb ...
229s Unpacking libseccomp2:s390x (2.5.5-1ubuntu5) over (2.5.5-1ubuntu4) ...
229s Setting up libseccomp2:s390x (2.5.5-1ubuntu5) ...
229s (Reading database ... 
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(Reading database ... 100%
(Reading database ... 55517 files and directories currently installed.)
229s Preparing to unpack .../python3-cffi-backend_1.17.1-2build1_s390x.deb ...
229s Unpacking python3-cffi-backend:s390x (1.17.1-2build1) over (1.17.1-2) ...
229s Selecting previously unselected package libassuan9:s390x.
229s Preparing to unpack .../libassuan9_3.0.1-2_s390x.deb ...
229s Unpacking libassuan9:s390x (3.0.1-2) ...
229s Preparing to unpack .../libgpgme11t64_1.24.0-2ubuntu1_s390x.deb ...
229s Unpacking libgpgme11t64:s390x (1.24.0-2ubuntu1) over (1.23.2-5ubuntu4) ...
229s Preparing to unpack .../python3-markupsafe_2.1.5-1build3_s390x.deb ...
229s Unpacking python3-markupsafe (2.1.5-1build3) over (2.1.5-1build2) ...
229s Setting up python3-markupsafe (2.1.5-1build3) ...
229s Setting up libassuan9:s390x (3.0.1-2) ...
229s Setting up libgpgme11t64:s390x (1.24.0-2ubuntu1) ...
229s Setting up python3-cffi-backend:s390x (1.17.1-2build1) ...
229s Processing triggers for libc-bin (2.40-1ubuntu3) ...
230s Reading package lists...
230s Building dependency tree...
230s Reading state information...
230s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
230s Hit:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease
230s Hit:2 http://ftpmaster.internal/ubuntu plucky InRelease
230s Hit:3 http://ftpmaster.internal/ubuntu plucky-updates InRelease
230s Hit:4 http://ftpmaster.internal/ubuntu plucky-security InRelease
231s Reading package lists...
231s Reading package lists...
231s Building dependency tree...
231s Reading state information...
231s Calculating upgrade...
232s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
232s Reading package lists...
232s Building dependency tree...
232s Reading state information...
232s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
236s Reading package lists...
236s Building dependency tree...
236s Reading state information...
236s Starting pkgProblemResolver with broken count: 1
236s Starting 2 pkgProblemResolver with broken count: 1
236s Investigating (0) python3-mirtop:s390x < none -> 0.4.28-1 @un puN Ib >
236s Broken python3-mirtop:s390x Depends on python3-six:s390x < none | 1.16.0-7 @un uH >
236s   Considering python3-six:s390x 1 as a solution to python3-mirtop:s390x 0
236s   Re-Instated python3-six:s390x
236s Broken python3-mirtop:s390x Depends on python3-pysam:s390x < none @un H >
236s Broken python3-mirtop:s390x Depends on python3-pybedtools:s390x < none @un H >
236s Broken python3-mirtop:s390x Depends on python3-pandas:s390x < none | 2.2.3+dfsg-5 @un uH >
236s   Considering python3-pandas:s390x 1 as a solution to python3-mirtop:s390x 0
236s   Re-Instated python3-dateutil:s390x
236s   Re-Instated libblas3:s390x
236s   Re-Instated libgfortran5:s390x
236s   Re-Instated liblapack3:s390x
236s   Re-Instated python3-numpy:s390x
236s   Re-Instated python3-tz:s390x
236s   Re-Instated python3-pandas-lib:s390x
236s   Re-Instated python3-pandas:s390x
236s Broken python3-mirtop:s390x Depends on python3-biopython:s390x < none | 1.84+dfsg-4 @un uH >
236s   Considering python3-biopython:s390x 1 as a solution to python3-mirtop:s390x 0
236s   Re-Instated libfreetype6:s390x
236s   Re-Instated libgomp1:s390x
236s   Re-Instated libimagequant0:s390x
236s   Re-Instated libjpeg-turbo8:s390x
236s   Re-Instated libjpeg8:s390x
236s   Re-Instated liblcms2-2:s390x
236s   Re-Instated libopenjp2-7:s390x
236s   Re-Instated libgraphite2-3:s390x
236s   Re-Instated libharfbuzz0b:s390x
236s   Re-Instated libraqm0:s390x
236s   Re-Instated libdeflate0:s390x
236s   Re-Instated libjbig0:s390x
236s   Re-Instated libsharpyuv0:s390x
236s   Re-Instated libwebp7:s390x
236s   Re-Instated libtiff6:s390x
236s   Re-Instated libwebpdemux2:s390x
236s   Re-Instated libwebpmux3:s390x
236s   Re-Instated python3-pil:s390x
236s   Re-Instated fonts-dejavu-mono:s390x
236s   Re-Instated fonts-dejavu-core:s390x
236s   Re-Instated fontconfig-config:s390x
236s   Re-Instated libfontconfig1:s390x
236s   Re-Instated libpixman-1-0:s390x
236s   Re-Instated libxcb-render0:s390x
236s   Re-Instated libxcb-shm0:s390x
236s   Re-Instated libxrender1:s390x
236s   Re-Instated libcairo2:s390x
236s   Re-Instated python3-cairo:s390x
236s   Re-Instated python3-freetype:s390x
236s   Re-Instated python3-rlpycairo:s390x
236s   Re-Instated libfontenc1:s390x
236s   Re-Instated x11-common:s390x
236s   Re-Instated xfonts-encodings:s390x
236s   Re-Instated xfonts-utils:s390x
236s   Re-Instated fonts-urw-base35:s390x
236s   Re-Instated python3-reportlab:s390x
236s   Re-Instated sgml-base:s390x
236s   Re-Instated xml-core:s390x
236s   Re-Instated w3c-sgml-lib:s390x
236s   Re-Instated python3-biopython:s390x
236s Done
236s Some packages could not be installed. This may mean that you have
236s requested an impossible situation or if you are using the unstable
236s distribution that some required packages have not yet been created
236s or been moved out of Incoming.
236s The following information may help to resolve the situation:
236s 
236s The following packages have unmet dependencies:
236s  python3-mirtop : Depends: python3-pysam but it is not installable
236s                   Depends: python3-pybedtools but it is not installable
236s E: Unable to correct problems, you have held broken packages.
236s autopkgtest: WARNING: Test dependencies are unsatisfiable with using apt pinning. Retrying with using all packages from plucky-proposed
237s Reading package lists...
237s Building dependency tree...
237s Reading state information...
237s Starting pkgProblemResolver with broken count: 1
237s Starting 2 pkgProblemResolver with broken count: 1
237s Investigating (0) python3-mirtop:s390x < none -> 0.4.28-1 @un puN Ib >
237s Broken python3-mirtop:s390x Depends on python3-six:s390x < none | 1.16.0-7 @un uH >
237s   Considering python3-six:s390x 1 as a solution to python3-mirtop:s390x 0
237s   Re-Instated python3-six:s390x
237s Broken python3-mirtop:s390x Depends on python3-pysam:s390x < none @un H >
237s Broken python3-mirtop:s390x Depends on python3-pybedtools:s390x < none @un H >
237s Broken python3-mirtop:s390x Depends on python3-pandas:s390x < none | 2.2.3+dfsg-5ubuntu1 @un uH >
237s   Considering python3-pandas:s390x 1 as a solution to python3-mirtop:s390x 0
237s   Re-Instated python3-dateutil:s390x
237s   Re-Instated libblas3:s390x
237s   Re-Instated libgfortran5:s390x
237s   Re-Instated liblapack3:s390x
237s   Re-Instated python3-numpy:s390x
237s   Re-Instated python3-tz:s390x
237s   Re-Instated python3-pandas-lib:s390x
237s   Re-Instated python3-pandas:s390x
237s Broken python3-mirtop:s390x Depends on python3-biopython:s390x < none | 1.84+dfsg-4build1 @un uH >
237s   Considering python3-biopython:s390x 1 as a solution to python3-mirtop:s390x 0
237s   Re-Instated libfreetype6:s390x
237s   Re-Instated libgomp1:s390x
237s   Re-Instated libimagequant0:s390x
237s   Re-Instated libjpeg-turbo8:s390x
237s   Re-Instated libjpeg8:s390x
237s   Re-Instated liblcms2-2:s390x
237s   Re-Instated libopenjp2-7:s390x
237s   Re-Instated libgraphite2-3:s390x
237s   Re-Instated libharfbuzz0b:s390x
237s   Re-Instated libraqm0:s390x
237s   Re-Instated libdeflate0:s390x
237s   Re-Instated libjbig0:s390x
237s   Re-Instated libsharpyuv0:s390x
237s   Re-Instated libwebp7:s390x
237s   Re-Instated libtiff6:s390x
237s   Re-Instated libwebpdemux2:s390x
237s   Re-Instated libwebpmux3:s390x
237s   Re-Instated python3-pil:s390x
237s   Re-Instated fonts-dejavu-mono:s390x
237s   Re-Instated fonts-dejavu-core:s390x
237s   Re-Instated fontconfig-config:s390x
237s   Re-Instated libfontconfig1:s390x
237s   Re-Instated libpixman-1-0:s390x
237s   Re-Instated libxcb-render0:s390x
237s   Re-Instated libxcb-shm0:s390x
237s   Re-Instated libxrender1:s390x
237s   Re-Instated libcairo2:s390x
237s   Re-Instated python3-cairo:s390x
237s   Re-Instated python3-freetype:s390x
237s   Re-Instated python3-rlpycairo:s390x
237s   Re-Instated libfontenc1:s390x
237s   Re-Instated x11-common:s390x
237s   Re-Instated xfonts-encodings:s390x
237s   Re-Instated xfonts-utils:s390x
237s   Re-Instated fonts-urw-base35:s390x
237s   Re-Instated python3-reportlab:s390x
237s   Re-Instated sgml-base:s390x
237s   Re-Instated xml-core:s390x
237s   Re-Instated w3c-sgml-lib:s390x
237s   Re-Instated python3-biopython:s390x
237s Done
237s Some packages could not be installed. This may mean that you have
237s requested an impossible situation or if you are using the unstable
237s distribution that some required packages have not yet been created
237s or been moved out of Incoming.
237s The following information may help to resolve the situation:
237s 
237s The following packages have unmet dependencies:
237s  python3-mirtop : Depends: python3-pysam but it is not installable
237s                   Depends: python3-pybedtools but it is not installable
237s E: Unable to correct problems, you have held broken packages.
237s autopkgtest: WARNING: Test dependencies are unsatisfiable - calling apt install on test deps directly for further data about failing dependencies in test logs
237s Reading package lists...
237s Building dependency tree...
237s Reading state information...
237s Starting pkgProblemResolver with broken count: 1
237s Starting 2 pkgProblemResolver with broken count: 1
237s Investigating (0) python3-mirtop:s390x < none -> 0.4.28-1 @un puN Ib >
237s Broken python3-mirtop:s390x Depends on python3-six:s390x < none | 1.16.0-7 @un uH >
237s   Considering python3-six:s390x 1 as a solution to python3-mirtop:s390x 9999
237s   Re-Instated python3-six:s390x
237s Broken python3-mirtop:s390x Depends on python3-pysam:s390x < none @un H >
237s Broken python3-mirtop:s390x Depends on python3-pybedtools:s390x < none @un H >
237s Broken python3-mirtop:s390x Depends on python3-pandas:s390x < none | 2.2.3+dfsg-5ubuntu1 @un uH >
237s   Considering python3-pandas:s390x 1 as a solution to python3-mirtop:s390x 9999
237s   Re-Instated python3-dateutil:s390x
237s   Re-Instated libblas3:s390x
237s   Re-Instated libgfortran5:s390x
237s   Re-Instated liblapack3:s390x
237s   Re-Instated python3-numpy:s390x
237s   Re-Instated python3-tz:s390x
237s   Re-Instated python3-pandas-lib:s390x
237s   Re-Instated python3-pandas:s390x
237s Broken python3-mirtop:s390x Depends on python3-biopython:s390x < none | 1.84+dfsg-4build1 @un uH >
238s   Considering python3-biopython:s390x 1 as a solution to python3-mirtop:s390x 9999
238s   Re-Instated libfreetype6:s390x
238s   Re-Instated libgomp1:s390x
238s   Re-Instated libimagequant0:s390x
238s   Re-Instated libjpeg-turbo8:s390x
238s   Re-Instated libjpeg8:s390x
238s   Re-Instated liblcms2-2:s390x
238s   Re-Instated libopenjp2-7:s390x
238s   Re-Instated libgraphite2-3:s390x
238s   Re-Instated libharfbuzz0b:s390x
238s   Re-Instated libraqm0:s390x
238s   Re-Instated libdeflate0:s390x
238s   Re-Instated libjbig0:s390x
238s   Re-Instated libsharpyuv0:s390x
238s   Re-Instated libwebp7:s390x
238s   Re-Instated libtiff6:s390x
238s   Re-Instated libwebpdemux2:s390x
238s   Re-Instated libwebpmux3:s390x
238s   Re-Instated python3-pil:s390x
238s   Re-Instated fonts-dejavu-mono:s390x
238s   Re-Instated fonts-dejavu-core:s390x
238s   Re-Instated fontconfig-config:s390x
238s   Re-Instated libfontconfig1:s390x
238s   Re-Instated libpixman-1-0:s390x
238s   Re-Instated libxcb-render0:s390x
238s   Re-Instated libxcb-shm0:s390x
238s   Re-Instated libxrender1:s390x
238s   Re-Instated libcairo2:s390x
238s   Re-Instated python3-cairo:s390x
238s   Re-Instated python3-freetype:s390x
238s   Re-Instated python3-rlpycairo:s390x
238s   Re-Instated libfontenc1:s390x
238s   Re-Instated x11-common:s390x
238s   Re-Instated xfonts-encodings:s390x
238s   Re-Instated xfonts-utils:s390x
238s   Re-Instated fonts-urw-base35:s390x
238s   Re-Instated python3-reportlab:s390x
238s   Re-Instated sgml-base:s390x
238s   Re-Instated xml-core:s390x
238s   Re-Instated w3c-sgml-lib:s390x
238s   Re-Instated python3-biopython:s390x
238s Done
238s Some packages could not be installed. This may mean that you have
238s requested an impossible situation or if you are using the unstable
238s distribution that some required packages have not yet been created
238s or been moved out of Incoming.
238s The following information may help to resolve the situation:
238s 
238s The following packages have unmet dependencies:
238s  python3-mirtop : Depends: python3-pysam but it is not installable
238s                   Depends: python3-pybedtools but it is not installable
238s E: Unable to correct problems, you have held broken packages.
238s autodep8-python3     FAIL badpkg
238s blame: mirtop
238s badpkg: Test dependencies are unsatisfiable. A common reason is that your testbed is out of date with respect to the archive, and you need to use a current testbed or run apt-get update or use -U.
238s autopkgtest [20:04:38]: @@@@@@@@@@@@@@@@@@@@ summary
238s run-unit-test        FAIL badpkg
238s blame: mirtop
238s badpkg: Test dependencies are unsatisfiable. A common reason is that your testbed is out of date with respect to the archive, and you need to use a current testbed or run apt-get update or use -U.
238s autodep8-python3     FAIL badpkg
238s blame: mirtop
238s badpkg: Test dependencies are unsatisfiable. A common reason is that your testbed is out of date with respect to the archive, and you need to use a current testbed or run apt-get update or use -U.
242s nova [W] Using flock in prodstack6-s390x
242s flock: timeout while waiting to get lock
242s Creating nova instance adt-plucky-s390x-mirtop-20241115-200040-juju-7f2275-prod-proposed-migration-environment-15-2514c218-fae8-46e5-92d8-23a0e2d36e2b from image adt/ubuntu-plucky-s390x-server-20241115.img (UUID c94000c6-8e8d-4693-8d37-fa9d34cd2414)...
242s nova [W] Using flock in prodstack6-s390x
242s Creating nova instance adt-plucky-s390x-mirtop-20241115-200040-juju-7f2275-prod-proposed-migration-environment-15-2514c218-fae8-46e5-92d8-23a0e2d36e2b from image adt/ubuntu-plucky-s390x-server-20241115.img (UUID c94000c6-8e8d-4693-8d37-fa9d34cd2414)...