0s autopkgtest [16:18:38]: starting date and time: 2024-11-14 16:18:38+0000 0s autopkgtest [16:18:38]: git checkout: 6f3be7a8 Fix armhf LXD image generation for plucky 0s autopkgtest [16:18:38]: host juju-7f2275-prod-proposed-migration-environment-20; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.up4eyp9s/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:numpy --apt-upgrade mdanalysis --timeout-short=300 --timeout-copy=20000 --timeout-test=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=numpy/1:1.26.4+ds-11ubuntu1 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest-big-s390x --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-20@bos03-s390x-20.secgroup --name adt-plucky-s390x-mdanalysis-20241114-161838-juju-7f2275-prod-proposed-migration-environment-20-2fc84fef-80db-418e-910a-d1a9e50cbc65 --image adt/ubuntu-plucky-s390x-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-20 --net-id=net_prod-proposed-migration-s390x -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,keyserver.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/ 106s autopkgtest [16:20:24]: testbed dpkg architecture: s390x 106s autopkgtest [16:20:24]: testbed apt version: 2.9.8 106s autopkgtest [16:20:24]: @@@@@@@@@@@@@@@@@@@@ test bed setup 107s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease [73.9 kB] 107s Get:2 http://ftpmaster.internal/ubuntu plucky-proposed/universe Sources [966 kB] 107s Get:3 http://ftpmaster.internal/ubuntu plucky-proposed/restricted Sources [7016 B] 107s Get:4 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse Sources [15.3 kB] 107s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/main Sources [105 kB] 107s Get:6 http://ftpmaster.internal/ubuntu plucky-proposed/main s390x Packages [119 kB] 107s Get:7 http://ftpmaster.internal/ubuntu plucky-proposed/universe s390x Packages [686 kB] 107s Get:8 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse s390x Packages [5540 B] 107s Fetched 1977 kB in 1s (2618 kB/s) 107s Reading package lists... 109s Reading package lists... 109s Building dependency tree... 109s Reading state information... 109s Calculating upgrade... 110s The following packages will be upgraded: 110s pastebinit python3-systemd 110s 2 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 110s Need to get 61.9 kB of archives. 110s After this operation, 122 kB of additional disk space will be used. 110s Get:1 http://ftpmaster.internal/ubuntu plucky/main s390x pastebinit all 1.7.1-1 [14.9 kB] 110s Get:2 http://ftpmaster.internal/ubuntu plucky/main s390x python3-systemd s390x 235-1build5 [46.9 kB] 110s Fetched 61.9 kB in 0s (186 kB/s) 110s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 55511 files and directories currently installed.) 110s Preparing to unpack .../pastebinit_1.7.1-1_all.deb ... 110s Unpacking pastebinit (1.7.1-1) over (1.7.0-1) ... 110s Preparing to unpack .../python3-systemd_235-1build5_s390x.deb ... 110s Unpacking python3-systemd (235-1build5) over (235-1build4) ... 110s Setting up pastebinit (1.7.1-1) ... 110s Setting up python3-systemd (235-1build5) ... 110s Processing triggers for man-db (2.12.1-3) ... 111s Reading package lists... 111s Building dependency tree... 111s Reading state information... 111s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 112s Hit:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease 112s Hit:2 http://ftpmaster.internal/ubuntu plucky InRelease 112s Hit:3 http://ftpmaster.internal/ubuntu plucky-updates InRelease 112s Hit:4 http://ftpmaster.internal/ubuntu plucky-security InRelease 113s Reading package lists... 113s Reading package lists... 113s Building dependency tree... 113s Reading state information... 113s Calculating upgrade... 113s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 113s Reading package lists... 113s Building dependency tree... 113s Reading state information... 113s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 116s autopkgtest [16:20:34]: testbed running kernel: Linux 6.11.0-8-generic #8-Ubuntu SMP Mon Sep 16 12:49:35 UTC 2024 116s autopkgtest [16:20:34]: @@@@@@@@@@@@@@@@@@@@ apt-source mdanalysis 120s Get:1 http://ftpmaster.internal/ubuntu plucky/universe mdanalysis 2.7.0-5 (dsc) [2889 B] 120s Get:2 http://ftpmaster.internal/ubuntu plucky/universe mdanalysis 2.7.0-5 (tar) [47.0 MB] 120s Get:3 http://ftpmaster.internal/ubuntu plucky/universe mdanalysis 2.7.0-5 (diff) [10.9 kB] 120s gpgv: Signature made Sat Aug 10 17:37:57 2024 UTC 120s gpgv: using RSA key 23C9A93E585819E9126D0A36573EF1E4BD5A01FA 120s gpgv: issuer "dparsons@debian.org" 120s gpgv: Can't check signature: No public key 120s dpkg-source: warning: cannot verify inline signature for ./mdanalysis_2.7.0-5.dsc: no acceptable signature found 121s autopkgtest [16:20:39]: testing package mdanalysis version 2.7.0-5 122s autopkgtest [16:20:40]: build not needed 126s autopkgtest [16:20:44]: test test-mdanalysis: preparing testbed 129s Reading package lists... 129s Building dependency tree... 129s Reading state information... 129s Starting pkgProblemResolver with broken count: 0 129s Starting 2 pkgProblemResolver with broken count: 0 129s Done 129s The following additional packages will be installed: 129s autoconf automake autopoint autotools-dev blt build-essential cpp cpp-14 129s cpp-14-s390x-linux-gnu cpp-s390x-linux-gnu cython3 debhelper debugedit 129s dh-autoreconf dh-python dh-strip-nondeterminism docutils-common dwz 129s fontconfig-config fonts-dejavu-core fonts-dejavu-mono fonts-font-awesome 129s fonts-lato fonts-lyx fonts-mathjax fonts-urw-base35 g++ g++-14 129s g++-14-s390x-linux-gnu g++-s390x-linux-gnu gcc gcc-14 gcc-14-s390x-linux-gnu 129s gcc-s390x-linux-gnu gettext intltool-debian libaec0 libarchive-zip-perl 129s libasan8 libblas3 libcairo2 libcc1-0 libdebhelper-perl libdeflate0 129s libexpat1-dev libfile-stripnondeterminism-perl libfontconfig1 libfontenc1 129s libfreetype6 libgcc-14-dev libgfortran5 libgomp1 libgraphite2-3 129s libharfbuzz0b libhdf5-103-1t64 libhdf5-hl-100t64 libimagequant0 libisl23 129s libitm1 libjbig0 libjpeg-turbo8 libjpeg8 libjs-jquery libjs-jquery-ui 129s libjs-mathjax libjs-sphinxdoc libjs-underscore libjson-perl liblapack3 129s liblbfgsb0 liblcms2-2 liblzf1 libmpc3 libnetcdf19t64 libopenjp2-7 129s libpixman-1-0 libpython3-all-dev libpython3-dev libpython3.12-dev 129s libqhull-r8.0 libraqm0 libsharpyuv0 libstdc++-14-dev libsz2 libtcl8.6 129s libtiff6 libtk8.6 libtool libubsan1 libwebp7 libwebpdemux2 libwebpmux3 129s libxcb-render0 libxcb-shm0 libxft2 libxrender1 libxslt1.1 libxss1 m4 129s po-debconf pybuild-plugin-pyproject python-matplotlib-data 129s python-mdanalysis-doc python3-alabaster python3-all python3-all-dev 129s python3-appdirs python3-biopython python3-brotli python3-build python3-cairo 129s python3-cftime python3-citeproc python3-contourpy python3-cycler 129s python3-dateutil python3-decorator python3-defusedxml python3-dev 129s python3-docutils python3-duecredit python3-fasteners python3-fonttools 129s python3-freetype python3-fs python3-griddataformats python3-h5py 129s python3-h5py-serial python3-hypothesis python3-imagesize python3-iniconfig 129s python3-installer python3-joblib python3-kiwisolver python3-latexcodec 129s python3-looseversion python3-lxml python3-lz4 python3-matplotlib 129s python3-mda-xdrlib python3-mdanalysis python3-mmtf python3-monotonic 129s python3-mpmath python3-mrcfile python3-msgpack python3-msmb-theme 129s python3-netcdf4 python3-networkx python3-numpy python3-packaging 129s python3-pandas python3-pandas-lib python3-pil python3-pil.imagetk 129s python3-pluggy python3-pybtex python3-pybtex-docutils 129s python3-pyproject-hooks python3-pytest python3-reportlab python3-rlpycairo 129s python3-roman python3-scipy python3-seaborn python3-six python3-sklearn 129s python3-sklearn-lib python3-snowballstemmer python3-sortedcontainers 129s python3-sphinx python3-sphinx-rtd-theme python3-sphinx-sitemap 129s python3-sphinxcontrib.bibtex python3-sphinxcontrib.jquery python3-sympy 129s python3-threadpoolctl python3-tk python3-toml python3-tqdm python3-tz 129s python3-ufolib2 python3-unicodedata2 python3-wheel python3.12-dev 129s python3.12-tk sgml-base sphinx-common sphinx-rtd-theme-common tk8.6-blt2.5 129s unicode-data w3c-sgml-lib x11-common xfonts-encodings xfonts-utils xml-core 129s zlib1g-dev 129s Suggested packages: 129s autoconf-archive gnu-standards autoconf-doc blt-demo cpp-doc gcc-14-locales 129s cpp-14-doc cython-doc dh-make flit fonts-freefont-otf | fonts-freefont-ttf 129s fonts-texgyre gcc-14-doc gcc-multilib manpages-dev flex bison gdb gcc-doc 129s gdb-s390x-linux-gnu gettext-doc libasprintf-dev libgettextpo-dev 129s libjs-jquery-ui-docs fonts-mathjax-extras fonts-stix libjs-mathjax-doc 129s liblcms2-utils libstdc++-14-doc tcl8.6 tk8.6 libtool-doc gfortran 129s | fortran95-compiler gcj-jdk m4-doc libmail-box-perl bwa clustalo clustalw 129s dialign dssp emboss fasttree mafft muscle3 phylip phyml prank probcons 129s python3-mysqldb python3-rdflib python3-psycopg2 raxml samtools t-coffee wise 129s python3-pip python3-venv python-build-doc python-cycler-doc docutils-doc 129s fonts-linuxlibertine | ttf-linux-libertine texlive-lang-french 129s texlive-latex-base texlive-latex-recommended python-h5py-doc 129s python-hypothesis-doc python-installer-doc python-joblib-doc 129s python-latexcodec-doc python-lxml-doc cm-super-minimal dvipng ffmpeg 129s fonts-staypuft ghostscript gir1.2-gtk-3.0 inkscape ipython3 librsvg2-common 129s python-matplotlib-doc python3-cairocffi python3-gi-cairo python3-gobject 129s python3-pyqt5 python3-sip python3-tornado texlive-extra-utils 129s texlive-latex-extra python-mpmath-doc python3-gmpy2 jupyter python3-gdal 129s python3-pydot python3-pygraphviz gfortran python-numpy-doc python-pandas-doc 129s python3-statsmodels python-pil-doc python-pybtex-doc 129s python-pybtex-docutils-doc pdf-viewer python3-egenix-mxtexttools 129s python-reportlab-doc rl-accel rl-renderpm python-scipy-doc python3-dap 129s python-sklearn-doc python3-stemmer python-sortedcontainers-doc dvisvgm 129s fonts-freefont-otf imagemagick-6.q16 latexmk sphinx-doc tex-gyre 129s texlive-fonts-extra texlive-fonts-recommended texlive-plain-generic 129s python-sphinxcontrib.bibtex-doc python-sympy-doc tix python3-tk-dbg 129s python3.13-tk sgml-base-doc 129s Recommended packages: 129s libarchive-cpio-perl javascript-common libjson-xs-perl libltdl-dev 129s libmail-sendmail-perl python-biopython-doc ncbi-blast+ libpaper-utils 129s python3-click python3-simplejson python3-psutil python3-bs4 129s python3-cssselect python3-html5lib python3-bottleneck python3-numexpr 129s python3-odf python3-openpyxl python3-tables python3-olefile 129s fonts-dejavu-extra isympy-common 129s The following NEW packages will be installed: 129s autoconf automake autopkgtest-satdep autopoint autotools-dev blt 129s build-essential cpp cpp-14 cpp-14-s390x-linux-gnu cpp-s390x-linux-gnu 129s cython3 debhelper debugedit dh-autoreconf dh-python dh-strip-nondeterminism 129s docutils-common dwz fontconfig-config fonts-dejavu-core fonts-dejavu-mono 129s fonts-font-awesome fonts-lato fonts-lyx fonts-mathjax fonts-urw-base35 g++ 129s g++-14 g++-14-s390x-linux-gnu g++-s390x-linux-gnu gcc gcc-14 129s gcc-14-s390x-linux-gnu gcc-s390x-linux-gnu gettext intltool-debian libaec0 129s libarchive-zip-perl libasan8 libblas3 libcairo2 libcc1-0 libdebhelper-perl 129s libdeflate0 libexpat1-dev libfile-stripnondeterminism-perl libfontconfig1 129s libfontenc1 libfreetype6 libgcc-14-dev libgfortran5 libgomp1 libgraphite2-3 129s libharfbuzz0b libhdf5-103-1t64 libhdf5-hl-100t64 libimagequant0 libisl23 129s libitm1 libjbig0 libjpeg-turbo8 libjpeg8 libjs-jquery libjs-jquery-ui 129s libjs-mathjax libjs-sphinxdoc libjs-underscore libjson-perl liblapack3 129s liblbfgsb0 liblcms2-2 liblzf1 libmpc3 libnetcdf19t64 libopenjp2-7 129s libpixman-1-0 libpython3-all-dev libpython3-dev libpython3.12-dev 129s libqhull-r8.0 libraqm0 libsharpyuv0 libstdc++-14-dev libsz2 libtcl8.6 129s libtiff6 libtk8.6 libtool libubsan1 libwebp7 libwebpdemux2 libwebpmux3 129s libxcb-render0 libxcb-shm0 libxft2 libxrender1 libxslt1.1 libxss1 m4 129s po-debconf pybuild-plugin-pyproject python-matplotlib-data 129s python-mdanalysis-doc python3-alabaster python3-all python3-all-dev 129s python3-appdirs python3-biopython python3-brotli python3-build python3-cairo 129s python3-cftime python3-citeproc python3-contourpy python3-cycler 129s python3-dateutil python3-decorator python3-defusedxml python3-dev 129s python3-docutils python3-duecredit python3-fasteners python3-fonttools 129s python3-freetype python3-fs python3-griddataformats python3-h5py 129s python3-h5py-serial python3-hypothesis python3-imagesize python3-iniconfig 129s python3-installer python3-joblib python3-kiwisolver python3-latexcodec 129s python3-looseversion python3-lxml python3-lz4 python3-matplotlib 129s python3-mda-xdrlib python3-mdanalysis python3-mmtf python3-monotonic 129s python3-mpmath python3-mrcfile python3-msgpack python3-msmb-theme 129s python3-netcdf4 python3-networkx python3-numpy python3-packaging 129s python3-pandas python3-pandas-lib python3-pil python3-pil.imagetk 129s python3-pluggy python3-pybtex python3-pybtex-docutils 129s python3-pyproject-hooks python3-pytest python3-reportlab python3-rlpycairo 129s python3-roman python3-scipy python3-seaborn python3-six python3-sklearn 129s python3-sklearn-lib python3-snowballstemmer python3-sortedcontainers 129s python3-sphinx python3-sphinx-rtd-theme python3-sphinx-sitemap 129s python3-sphinxcontrib.bibtex python3-sphinxcontrib.jquery python3-sympy 129s python3-threadpoolctl python3-tk python3-toml python3-tqdm python3-tz 129s python3-ufolib2 python3-unicodedata2 python3-wheel python3.12-dev 129s python3.12-tk sgml-base sphinx-common sphinx-rtd-theme-common tk8.6-blt2.5 129s unicode-data w3c-sgml-lib x11-common xfonts-encodings xfonts-utils xml-core 129s zlib1g-dev 129s 0 upgraded, 198 newly installed, 0 to remove and 0 not upgraded. 129s Need to get 191 MB/191 MB of archives. 129s After this operation, 800 MB of additional disk space will be used. 129s Get:1 /tmp/autopkgtest.YRAxix/1-autopkgtest-satdep.deb autopkgtest-satdep s390x 0 [1004 B] 130s Get:2 http://ftpmaster.internal/ubuntu plucky/main s390x fonts-lato all 2.015-1 [2781 kB] 130s Get:3 http://ftpmaster.internal/ubuntu plucky/main s390x sgml-base all 1.31 [11.4 kB] 130s Get:4 http://ftpmaster.internal/ubuntu plucky/main s390x m4 s390x 1.4.19-4build1 [256 kB] 130s Get:5 http://ftpmaster.internal/ubuntu plucky/main s390x autoconf all 2.72-3 [382 kB] 130s Get:6 http://ftpmaster.internal/ubuntu plucky/main s390x autotools-dev all 20220109.1 [44.9 kB] 130s Get:7 http://ftpmaster.internal/ubuntu plucky/main s390x automake all 1:1.16.5-1.3ubuntu1 [558 kB] 130s Get:8 http://ftpmaster.internal/ubuntu plucky/main s390x autopoint all 0.22.5-2 [616 kB] 130s Get:9 http://ftpmaster.internal/ubuntu plucky/main s390x libtcl8.6 s390x 8.6.15+dfsg-2 [1034 kB] 130s Get:10 http://ftpmaster.internal/ubuntu plucky/main s390x libfreetype6 s390x 2.13.3+dfsg-1 [431 kB] 130s Get:11 http://ftpmaster.internal/ubuntu plucky/main s390x fonts-dejavu-mono all 2.37-8 [502 kB] 130s Get:12 http://ftpmaster.internal/ubuntu plucky/main s390x fonts-dejavu-core all 2.37-8 [835 kB] 130s Get:13 http://ftpmaster.internal/ubuntu plucky/main s390x libfontenc1 s390x 1:1.1.8-1build1 [14.8 kB] 130s Get:14 http://ftpmaster.internal/ubuntu plucky/main s390x x11-common all 1:7.7+23ubuntu3 [21.7 kB] 130s Get:15 http://ftpmaster.internal/ubuntu plucky/main s390x xfonts-encodings all 1:1.0.5-0ubuntu2 [578 kB] 130s Get:16 http://ftpmaster.internal/ubuntu plucky/main s390x xfonts-utils s390x 1:7.7+7 [101 kB] 130s Get:17 http://ftpmaster.internal/ubuntu plucky/main s390x fonts-urw-base35 all 20200910-8 [11.0 MB] 131s Get:18 http://ftpmaster.internal/ubuntu plucky/main s390x fontconfig-config s390x 2.15.0-1.1ubuntu2 [37.4 kB] 131s Get:19 http://ftpmaster.internal/ubuntu plucky/main s390x libfontconfig1 s390x 2.15.0-1.1ubuntu2 [150 kB] 131s Get:20 http://ftpmaster.internal/ubuntu plucky/main s390x libxrender1 s390x 1:0.9.10-1.1build1 [20.4 kB] 131s Get:21 http://ftpmaster.internal/ubuntu plucky/main s390x libxft2 s390x 2.3.6-1build1 [49.6 kB] 131s Get:22 http://ftpmaster.internal/ubuntu plucky/main s390x libxss1 s390x 1:1.2.3-1build3 [7396 B] 131s Get:23 http://ftpmaster.internal/ubuntu plucky/main s390x libtk8.6 s390x 8.6.15-1 [828 kB] 131s Get:24 http://ftpmaster.internal/ubuntu plucky/main s390x tk8.6-blt2.5 s390x 2.5.3+dfsg-7build1 [662 kB] 131s Get:25 http://ftpmaster.internal/ubuntu plucky/main s390x blt s390x 2.5.3+dfsg-7build1 [4840 B] 131s Get:26 http://ftpmaster.internal/ubuntu plucky/main s390x libisl23 s390x 0.27-1 [704 kB] 131s Get:27 http://ftpmaster.internal/ubuntu plucky/main s390x libmpc3 s390x 1.3.1-1build2 [57.8 kB] 131s Get:28 http://ftpmaster.internal/ubuntu plucky/main s390x cpp-14-s390x-linux-gnu s390x 14.2.0-8ubuntu1 [9570 kB] 131s Get:29 http://ftpmaster.internal/ubuntu plucky/main s390x cpp-14 s390x 14.2.0-8ubuntu1 [1026 B] 131s Get:30 http://ftpmaster.internal/ubuntu plucky/main s390x cpp-s390x-linux-gnu s390x 4:14.1.0-2ubuntu1 [5452 B] 131s Get:31 http://ftpmaster.internal/ubuntu plucky/main s390x cpp s390x 4:14.1.0-2ubuntu1 [22.4 kB] 131s Get:32 http://ftpmaster.internal/ubuntu plucky/main s390x libcc1-0 s390x 14.2.0-8ubuntu1 [50.6 kB] 131s Get:33 http://ftpmaster.internal/ubuntu plucky/main s390x libgomp1 s390x 14.2.0-8ubuntu1 [151 kB] 131s Get:34 http://ftpmaster.internal/ubuntu plucky/main s390x libitm1 s390x 14.2.0-8ubuntu1 [30.9 kB] 131s Get:35 http://ftpmaster.internal/ubuntu plucky/main s390x libasan8 s390x 14.2.0-8ubuntu1 [2963 kB] 131s Get:36 http://ftpmaster.internal/ubuntu plucky/main s390x libubsan1 s390x 14.2.0-8ubuntu1 [1184 kB] 131s Get:37 http://ftpmaster.internal/ubuntu plucky/main s390x libgcc-14-dev s390x 14.2.0-8ubuntu1 [1037 kB] 131s Get:38 http://ftpmaster.internal/ubuntu plucky/main s390x gcc-14-s390x-linux-gnu s390x 14.2.0-8ubuntu1 [18.7 MB] 132s Get:39 http://ftpmaster.internal/ubuntu plucky/main s390x gcc-14 s390x 14.2.0-8ubuntu1 [518 kB] 132s Get:40 http://ftpmaster.internal/ubuntu plucky/main s390x gcc-s390x-linux-gnu s390x 4:14.1.0-2ubuntu1 [1204 B] 132s Get:41 http://ftpmaster.internal/ubuntu plucky/main s390x gcc s390x 4:14.1.0-2ubuntu1 [4996 B] 132s Get:42 http://ftpmaster.internal/ubuntu plucky/main s390x libstdc++-14-dev s390x 14.2.0-8ubuntu1 [2608 kB] 132s Get:43 http://ftpmaster.internal/ubuntu plucky/main s390x g++-14-s390x-linux-gnu s390x 14.2.0-8ubuntu1 [11.0 MB] 132s Get:44 http://ftpmaster.internal/ubuntu plucky/main s390x g++-14 s390x 14.2.0-8ubuntu1 [19.9 kB] 132s Get:45 http://ftpmaster.internal/ubuntu plucky/main s390x g++-s390x-linux-gnu s390x 4:14.1.0-2ubuntu1 [956 B] 132s Get:46 http://ftpmaster.internal/ubuntu plucky/main s390x g++ s390x 4:14.1.0-2ubuntu1 [1076 B] 132s Get:47 http://ftpmaster.internal/ubuntu plucky/main s390x build-essential s390x 12.10ubuntu1 [4930 B] 132s Get:48 http://ftpmaster.internal/ubuntu plucky/universe s390x cython3 s390x 3.0.11+dfsg-1ubuntu1 [2524 kB] 132s Get:49 http://ftpmaster.internal/ubuntu plucky/main s390x libdebhelper-perl all 13.20ubuntu1 [94.2 kB] 132s Get:50 http://ftpmaster.internal/ubuntu plucky/main s390x libtool all 2.4.7-7build1 [166 kB] 132s Get:51 http://ftpmaster.internal/ubuntu plucky/main s390x dh-autoreconf all 20 [16.1 kB] 132s Get:52 http://ftpmaster.internal/ubuntu plucky/main s390x libarchive-zip-perl all 1.68-1 [90.2 kB] 132s Get:53 http://ftpmaster.internal/ubuntu plucky/main s390x libfile-stripnondeterminism-perl all 1.14.0-1 [20.1 kB] 132s Get:54 http://ftpmaster.internal/ubuntu plucky/main s390x dh-strip-nondeterminism all 1.14.0-1 [5058 B] 132s Get:55 http://ftpmaster.internal/ubuntu plucky/main s390x debugedit s390x 1:5.1-1 [49.9 kB] 132s Get:56 http://ftpmaster.internal/ubuntu plucky/main s390x dwz s390x 0.15-1build6 [122 kB] 132s Get:57 http://ftpmaster.internal/ubuntu plucky/main s390x gettext s390x 0.22.5-2 [996 kB] 132s Get:58 http://ftpmaster.internal/ubuntu plucky/main s390x intltool-debian all 0.35.0+20060710.6 [23.2 kB] 132s Get:59 http://ftpmaster.internal/ubuntu plucky/main s390x po-debconf all 1.0.21+nmu1 [233 kB] 132s Get:60 http://ftpmaster.internal/ubuntu plucky/main s390x debhelper all 13.20ubuntu1 [893 kB] 132s Get:61 http://ftpmaster.internal/ubuntu plucky/universe s390x dh-python all 6.20241024 [112 kB] 132s Get:62 http://ftpmaster.internal/ubuntu plucky/main s390x xml-core all 0.19 [20.3 kB] 132s Get:63 http://ftpmaster.internal/ubuntu plucky/main s390x docutils-common all 0.21.2+dfsg-2 [131 kB] 132s Get:64 http://ftpmaster.internal/ubuntu plucky/main s390x fonts-font-awesome all 5.0.10+really4.7.0~dfsg-4.1 [516 kB] 132s Get:65 http://ftpmaster.internal/ubuntu plucky/universe s390x fonts-lyx all 2.4.2.1-1 [171 kB] 132s Get:66 http://ftpmaster.internal/ubuntu plucky/main s390x fonts-mathjax all 2.7.9+dfsg-1 [2208 kB] 132s Get:67 http://ftpmaster.internal/ubuntu plucky/universe s390x libaec0 s390x 1.1.3-1 [25.7 kB] 132s Get:68 http://ftpmaster.internal/ubuntu plucky/main s390x libblas3 s390x 3.12.0-3build2 [238 kB] 132s Get:69 http://ftpmaster.internal/ubuntu plucky/main s390x libpixman-1-0 s390x 0.44.0-3 [201 kB] 132s Get:70 http://ftpmaster.internal/ubuntu plucky/main s390x libxcb-render0 s390x 1.17.0-2 [17.0 kB] 132s Get:71 http://ftpmaster.internal/ubuntu plucky/main s390x libxcb-shm0 s390x 1.17.0-2 [5862 B] 132s Get:72 http://ftpmaster.internal/ubuntu plucky/main s390x libcairo2 s390x 1.18.2-2 [580 kB] 132s Get:73 http://ftpmaster.internal/ubuntu plucky/main s390x libdeflate0 s390x 1.22-1 [46.1 kB] 132s Get:74 http://ftpmaster.internal/ubuntu plucky/main s390x libexpat1-dev s390x 2.6.2-2 [146 kB] 132s Get:75 http://ftpmaster.internal/ubuntu plucky/main s390x libgfortran5 s390x 14.2.0-8ubuntu1 [587 kB] 132s Get:76 http://ftpmaster.internal/ubuntu plucky/main s390x libgraphite2-3 s390x 1.3.14-2ubuntu1 [79.8 kB] 132s Get:77 http://ftpmaster.internal/ubuntu plucky/main s390x libharfbuzz0b s390x 10.0.1-1 [536 kB] 132s Get:78 http://ftpmaster.internal/ubuntu plucky/universe s390x libsz2 s390x 1.1.3-1 [5442 B] 132s Get:79 http://ftpmaster.internal/ubuntu plucky/universe s390x libhdf5-103-1t64 s390x 1.10.10+repack-4ubuntu3 [1426 kB] 132s Get:80 http://ftpmaster.internal/ubuntu plucky/universe s390x libhdf5-hl-100t64 s390x 1.10.10+repack-4ubuntu3 [58.0 kB] 132s Get:81 http://ftpmaster.internal/ubuntu plucky/main s390x libimagequant0 s390x 2.18.0-1build1 [43.3 kB] 132s Get:82 http://ftpmaster.internal/ubuntu plucky/main s390x libjpeg-turbo8 s390x 2.1.5-2ubuntu2 [150 kB] 132s Get:83 http://ftpmaster.internal/ubuntu plucky/main s390x libjpeg8 s390x 8c-2ubuntu11 [2146 B] 132s Get:84 http://ftpmaster.internal/ubuntu plucky/main s390x libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [328 kB] 132s Get:85 http://ftpmaster.internal/ubuntu plucky/universe s390x libjs-jquery-ui all 1.13.2+dfsg-1 [252 kB] 132s Get:86 http://ftpmaster.internal/ubuntu plucky/main s390x libjs-underscore all 1.13.4~dfsg+~1.11.4-3 [118 kB] 132s Get:87 http://ftpmaster.internal/ubuntu plucky/main s390x libjs-sphinxdoc all 7.4.7-4 [158 kB] 132s Get:88 http://ftpmaster.internal/ubuntu plucky/main s390x libjson-perl all 4.10000-1 [81.9 kB] 132s Get:89 http://ftpmaster.internal/ubuntu plucky/main s390x liblapack3 s390x 3.12.0-3build2 [2953 kB] 132s Get:90 http://ftpmaster.internal/ubuntu plucky/universe s390x liblbfgsb0 s390x 3.0+dfsg.4-1build1 [32.4 kB] 132s Get:91 http://ftpmaster.internal/ubuntu plucky/main s390x liblcms2-2 s390x 2.16-2 [175 kB] 132s Get:92 http://ftpmaster.internal/ubuntu plucky/universe s390x liblzf1 s390x 3.6-4 [7020 B] 133s Get:93 http://ftpmaster.internal/ubuntu plucky/universe s390x libnetcdf19t64 s390x 1:4.9.2-6ubuntu1 [496 kB] 133s Get:94 http://ftpmaster.internal/ubuntu plucky/main s390x zlib1g-dev s390x 1:1.3.dfsg+really1.3.1-1ubuntu1 [898 kB] 133s Get:95 http://ftpmaster.internal/ubuntu plucky/main s390x libpython3.12-dev s390x 3.12.7-3 [5838 kB] 133s Get:96 http://ftpmaster.internal/ubuntu plucky/main s390x libpython3-dev s390x 3.12.6-0ubuntu1 [10.2 kB] 133s Get:97 http://ftpmaster.internal/ubuntu plucky/main s390x libpython3-all-dev s390x 3.12.6-0ubuntu1 [918 B] 133s Get:98 http://ftpmaster.internal/ubuntu plucky/universe s390x libqhull-r8.0 s390x 2020.2-6build1 [199 kB] 133s Get:99 http://ftpmaster.internal/ubuntu plucky/main s390x libraqm0 s390x 0.10.1-1build1 [16.2 kB] 133s Get:100 http://ftpmaster.internal/ubuntu plucky/main s390x libsharpyuv0 s390x 1.4.0-0.1 [16.2 kB] 133s Get:101 http://ftpmaster.internal/ubuntu plucky/main s390x libjbig0 s390x 2.1-6.1ubuntu2 [33.1 kB] 133s Get:102 http://ftpmaster.internal/ubuntu plucky/main s390x libwebp7 s390x 1.4.0-0.1 [204 kB] 133s Get:103 http://ftpmaster.internal/ubuntu plucky/main s390x libtiff6 s390x 4.5.1+git230720-4ubuntu4 [217 kB] 133s Get:104 http://ftpmaster.internal/ubuntu plucky/main s390x libwebpdemux2 s390x 1.4.0-0.1 [12.2 kB] 133s Get:105 http://ftpmaster.internal/ubuntu plucky/main s390x libwebpmux3 s390x 1.4.0-0.1 [25.3 kB] 133s Get:106 http://ftpmaster.internal/ubuntu plucky/main s390x libxslt1.1 s390x 1.1.39-0exp1ubuntu1 [169 kB] 133s Get:107 http://ftpmaster.internal/ubuntu plucky/main s390x python3-packaging all 24.1-1 [41.4 kB] 133s Get:108 http://ftpmaster.internal/ubuntu plucky/universe s390x python3-pyproject-hooks all 1.2.0-1 [10.2 kB] 133s Get:109 http://ftpmaster.internal/ubuntu plucky/universe s390x python3-toml all 0.10.2-1 [16.5 kB] 133s Get:110 http://ftpmaster.internal/ubuntu plucky/universe s390x python3-wheel all 0.44.0-1 [54.2 kB] 133s Get:111 http://ftpmaster.internal/ubuntu plucky/universe s390x python3-build all 1.2.2-1 [31.0 kB] 133s Get:112 http://ftpmaster.internal/ubuntu plucky/universe s390x python3-installer all 0.7.0+dfsg1-3 [17.4 kB] 133s Get:113 http://ftpmaster.internal/ubuntu plucky/universe s390x pybuild-plugin-pyproject all 6.20241024 [1728 B] 133s Get:114 http://ftpmaster.internal/ubuntu plucky/universe s390x python-matplotlib-data all 3.8.3-3 [2928 kB] 133s Get:115 http://ftpmaster.internal/ubuntu plucky/main s390x libjs-mathjax all 2.7.9+dfsg-1 [5665 kB] 134s Get:116 http://ftpmaster.internal/ubuntu plucky/universe s390x python-mdanalysis-doc all 2.7.0-5 [2323 kB] 134s Get:117 http://ftpmaster.internal/ubuntu plucky/main s390x python3-all s390x 3.12.6-0ubuntu1 [890 B] 134s Get:118 http://ftpmaster.internal/ubuntu plucky/main s390x python3.12-dev s390x 3.12.7-3 [505 kB] 134s Get:119 http://ftpmaster.internal/ubuntu plucky/main s390x python3-dev s390x 3.12.6-0ubuntu1 [26.7 kB] 134s Get:120 http://ftpmaster.internal/ubuntu plucky/main s390x python3-all-dev s390x 3.12.6-0ubuntu1 [912 B] 134s Get:121 http://ftpmaster.internal/ubuntu plucky/main s390x python3-appdirs all 1.4.4-4 [10.9 kB] 134s Get:122 http://ftpmaster.internal/ubuntu plucky-proposed/main s390x python3-numpy s390x 1:1.26.4+ds-11ubuntu1 [4602 kB] 134s Get:123 http://ftpmaster.internal/ubuntu plucky/main s390x python3.12-tk s390x 3.12.7-3 [117 kB] 134s Get:124 http://ftpmaster.internal/ubuntu plucky/main s390x python3-tk s390x 3.12.6-1ubuntu1 [9806 B] 134s Get:125 http://ftpmaster.internal/ubuntu plucky/universe s390x python3-pil.imagetk s390x 10.4.0-1ubuntu1 [9314 B] 134s Get:126 http://ftpmaster.internal/ubuntu plucky/main s390x libopenjp2-7 s390x 2.5.0-2ubuntu1 [208 kB] 134s Get:127 http://ftpmaster.internal/ubuntu plucky/main s390x python3-pil s390x 10.4.0-1ubuntu1 [492 kB] 134s Get:128 http://ftpmaster.internal/ubuntu plucky/main s390x python3-cairo s390x 1.26.1-2 [119 kB] 134s Get:129 http://ftpmaster.internal/ubuntu plucky/universe s390x python3-freetype all 2.5.1-1 [92.3 kB] 134s Get:130 http://ftpmaster.internal/ubuntu plucky/universe s390x python3-rlpycairo all 0.3.0-3 [9130 B] 134s Get:131 http://ftpmaster.internal/ubuntu plucky/universe s390x python3-reportlab all 4.2.5-1 [1107 kB] 134s Get:132 http://ftpmaster.internal/ubuntu plucky/universe s390x w3c-sgml-lib all 1.3-3 [280 kB] 134s Get:133 http://ftpmaster.internal/ubuntu plucky/universe s390x python3-biopython s390x 1.84+dfsg-4 [1721 kB] 134s Get:134 http://ftpmaster.internal/ubuntu plucky/universe s390x python3-brotli s390x 1.1.0-2build2 [376 kB] 134s Get:135 http://ftpmaster.internal/ubuntu plucky/universe s390x python3-cftime s390x 1.6.4-1 [215 kB] 134s Get:136 http://ftpmaster.internal/ubuntu plucky/main s390x python3-lxml s390x 5.3.0-1 [1314 kB] 135s Get:137 http://ftpmaster.internal/ubuntu plucky/universe s390x python3-citeproc all 0.6.0-3 [98.4 kB] 135s Get:138 http://ftpmaster.internal/ubuntu plucky/universe s390x python3-contourpy s390x 1.3.0-2 [195 kB] 135s Get:139 http://ftpmaster.internal/ubuntu plucky/universe s390x python3-cycler all 0.12.1-1 [9716 B] 135s Get:140 http://ftpmaster.internal/ubuntu plucky/main s390x python3-six all 1.16.0-7 [13.1 kB] 135s Get:141 http://ftpmaster.internal/ubuntu plucky/main s390x python3-dateutil all 2.9.0-2 [80.3 kB] 135s Get:142 http://ftpmaster.internal/ubuntu plucky/main s390x python3-decorator all 5.1.1-5 [10.1 kB] 135s Get:143 http://ftpmaster.internal/ubuntu plucky/main s390x python3-defusedxml all 0.7.1-2 [42.0 kB] 135s Get:144 http://ftpmaster.internal/ubuntu plucky/main s390x python3-roman all 4.2-1 [10.0 kB] 135s Get:145 http://ftpmaster.internal/ubuntu plucky/main s390x python3-docutils all 0.21.2+dfsg-2 [409 kB] 135s Get:146 http://ftpmaster.internal/ubuntu plucky/universe s390x python3-looseversion all 1.3.0-3 [8354 B] 135s Get:147 http://ftpmaster.internal/ubuntu plucky/universe s390x python3-duecredit all 0.10.2-2 [66.0 kB] 135s Get:148 http://ftpmaster.internal/ubuntu plucky/main s390x python3-monotonic all 1.6-2 [5732 B] 135s Get:149 http://ftpmaster.internal/ubuntu plucky/main s390x python3-fasteners all 0.18-2 [12.5 kB] 135s Get:150 http://ftpmaster.internal/ubuntu plucky/universe s390x python3-scipy s390x 1.13.1-5 [17.5 MB] 135s Get:151 http://ftpmaster.internal/ubuntu plucky/universe s390x python3-ufolib2 all 0.16.1+dfsg1-1 [33.4 kB] 135s Get:152 http://ftpmaster.internal/ubuntu plucky/universe s390x python3-mpmath all 1.3.0-1 [425 kB] 135s Get:153 http://ftpmaster.internal/ubuntu plucky/universe s390x python3-sympy all 1.13.3-1 [4228 kB] 136s Get:154 http://ftpmaster.internal/ubuntu plucky/main s390x python3-tz all 2024.1-2 [31.4 kB] 136s Get:155 http://ftpmaster.internal/ubuntu plucky/universe s390x python3-fs all 2.4.16-4 [91.3 kB] 136s Get:156 http://ftpmaster.internal/ubuntu plucky/universe s390x python3-lz4 s390x 4.0.2+dfsg-1build4 [26.4 kB] 136s Get:157 http://ftpmaster.internal/ubuntu plucky/universe s390x python3-unicodedata2 s390x 15.1.0+ds-1build1 [367 kB] 136s Get:158 http://ftpmaster.internal/ubuntu plucky/universe s390x unicode-data all 15.1.0-1 [8878 kB] 136s Get:159 http://ftpmaster.internal/ubuntu plucky/universe s390x python3-fonttools s390x 4.46.0-1build2 [1453 kB] 136s Get:160 http://ftpmaster.internal/ubuntu plucky/main s390x sphinx-rtd-theme-common all 3.0.1+dfsg-1 [1012 kB] 136s Get:161 http://ftpmaster.internal/ubuntu plucky/universe s390x python3-mrcfile all 1.5.3-3 [114 kB] 136s Get:162 http://ftpmaster.internal/ubuntu plucky/universe s390x python3-griddataformats all 1.0.2-2 [2107 kB] 136s Get:163 http://ftpmaster.internal/ubuntu plucky/universe s390x python3-h5py-serial s390x 3.11.0-5ubuntu1 [1151 kB] 136s Get:164 http://ftpmaster.internal/ubuntu plucky/universe s390x python3-h5py all 3.11.0-5ubuntu1 [7974 B] 136s Get:165 http://ftpmaster.internal/ubuntu plucky/main s390x python3-sortedcontainers all 2.4.0-2 [27.6 kB] 136s Get:166 http://ftpmaster.internal/ubuntu plucky/universe s390x python3-hypothesis all 6.116.0-1 [326 kB] 136s Get:167 http://ftpmaster.internal/ubuntu plucky/main s390x python3-imagesize all 1.4.1-1 [6844 B] 136s Get:168 http://ftpmaster.internal/ubuntu plucky/universe s390x python3-iniconfig all 1.1.1-2 [6024 B] 136s Get:169 http://ftpmaster.internal/ubuntu plucky/universe s390x python3-joblib all 1.3.2-5 [206 kB] 136s Get:170 http://ftpmaster.internal/ubuntu plucky/universe s390x python3-kiwisolver s390x 1.4.7-2build1 [65.5 kB] 136s Get:171 http://ftpmaster.internal/ubuntu plucky/universe s390x python3-latexcodec all 3.0.0-1 [16.6 kB] 136s Get:172 http://ftpmaster.internal/ubuntu plucky/universe s390x python3-matplotlib s390x 3.8.3-3 [4554 kB] 137s Get:173 http://ftpmaster.internal/ubuntu plucky/universe s390x python3-mda-xdrlib all 0.2.0-3 [11.4 kB] 137s Get:174 http://ftpmaster.internal/ubuntu plucky/main s390x python3-msgpack s390x 1.0.3-3build2 [85.0 kB] 137s Get:175 http://ftpmaster.internal/ubuntu plucky/universe s390x python3-mmtf all 1.1.3-1 [16.2 kB] 137s Get:176 http://ftpmaster.internal/ubuntu plucky/universe s390x python3-threadpoolctl all 3.1.0-1 [21.3 kB] 137s Get:177 http://ftpmaster.internal/ubuntu plucky/universe s390x python3-tqdm all 4.67.0-1 [91.6 kB] 137s Get:178 http://ftpmaster.internal/ubuntu plucky/universe s390x python3-mdanalysis s390x 2.7.0-5 [1911 kB] 137s Get:179 http://ftpmaster.internal/ubuntu plucky/main s390x sphinx-common all 7.4.7-4 [775 kB] 137s Get:180 http://ftpmaster.internal/ubuntu plucky/main s390x python3-alabaster all 0.7.16-0.1 [18.5 kB] 137s Get:181 http://ftpmaster.internal/ubuntu plucky/main s390x python3-snowballstemmer all 2.2.0-4build1 [59.8 kB] 137s Get:182 http://ftpmaster.internal/ubuntu plucky/main s390x python3-sphinx all 7.4.7-4 [593 kB] 137s Get:183 http://ftpmaster.internal/ubuntu plucky/universe s390x python3-sphinxcontrib.jquery all 4.1-5 [6678 B] 137s Get:184 http://ftpmaster.internal/ubuntu plucky/universe s390x python3-sphinx-rtd-theme all 3.0.1+dfsg-1 [23.5 kB] 137s Get:185 http://ftpmaster.internal/ubuntu plucky/universe s390x python3-msmb-theme all 1.2.0-4 [35.4 kB] 137s Get:186 http://ftpmaster.internal/ubuntu plucky/universe s390x python3-netcdf4 s390x 1.7.2-1 [628 kB] 137s Get:187 http://ftpmaster.internal/ubuntu plucky/main s390x python3-networkx all 3.2.1-4ubuntu1 [11.5 MB] 137s Get:188 http://ftpmaster.internal/ubuntu plucky/universe s390x python3-pandas-lib s390x 2.2.3+dfsg-5 [4938 kB] 138s Get:189 http://ftpmaster.internal/ubuntu plucky/universe s390x python3-pandas all 2.2.3+dfsg-5 [3112 kB] 138s Get:190 http://ftpmaster.internal/ubuntu plucky/universe s390x python3-pluggy all 1.5.0-1 [21.0 kB] 138s Get:191 http://ftpmaster.internal/ubuntu plucky/universe s390x python3-pybtex all 0.24.0-4 [70.0 kB] 138s Get:192 http://ftpmaster.internal/ubuntu plucky/universe s390x python3-pybtex-docutils all 1.0.2-1 [7176 B] 138s Get:193 http://ftpmaster.internal/ubuntu plucky/universe s390x python3-pytest all 8.3.3-1 [251 kB] 138s Get:194 http://ftpmaster.internal/ubuntu plucky/universe s390x python3-seaborn all 0.13.2-4 [225 kB] 138s Get:195 http://ftpmaster.internal/ubuntu plucky/universe s390x python3-sklearn-lib s390x 1.4.2+dfsg-6 [4036 kB] 138s Get:196 http://ftpmaster.internal/ubuntu plucky/universe s390x python3-sklearn all 1.4.2+dfsg-6 [2257 kB] 138s Get:197 http://ftpmaster.internal/ubuntu plucky/universe s390x python3-sphinx-sitemap all 2.6.0-1 [6674 B] 138s Get:198 http://ftpmaster.internal/ubuntu plucky/universe s390x python3-sphinxcontrib.bibtex all 2.6.2-1 [25.2 kB] 139s Fetched 191 MB in 9s (22.4 MB/s) 139s Selecting previously unselected package fonts-lato. 139s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 55516 files and directories currently installed.) 139s Preparing to unpack .../000-fonts-lato_2.015-1_all.deb ... 139s Unpacking fonts-lato (2.015-1) ... 139s Selecting previously unselected package sgml-base. 139s Preparing to unpack .../001-sgml-base_1.31_all.deb ... 139s Unpacking sgml-base (1.31) ... 139s Selecting previously unselected package m4. 139s Preparing to unpack .../002-m4_1.4.19-4build1_s390x.deb ... 139s Unpacking m4 (1.4.19-4build1) ... 139s Selecting previously unselected package autoconf. 139s Preparing to unpack .../003-autoconf_2.72-3_all.deb ... 139s Unpacking autoconf (2.72-3) ... 139s Selecting previously unselected package autotools-dev. 139s Preparing to unpack .../004-autotools-dev_20220109.1_all.deb ... 139s Unpacking autotools-dev (20220109.1) ... 139s Selecting previously unselected package automake. 139s Preparing to unpack .../005-automake_1%3a1.16.5-1.3ubuntu1_all.deb ... 139s Unpacking automake (1:1.16.5-1.3ubuntu1) ... 139s Selecting previously unselected package autopoint. 139s Preparing to unpack .../006-autopoint_0.22.5-2_all.deb ... 139s Unpacking autopoint (0.22.5-2) ... 139s Selecting previously unselected package libtcl8.6:s390x. 139s Preparing to unpack .../007-libtcl8.6_8.6.15+dfsg-2_s390x.deb ... 139s Unpacking libtcl8.6:s390x (8.6.15+dfsg-2) ... 139s Selecting previously unselected package libfreetype6:s390x. 139s Preparing to unpack .../008-libfreetype6_2.13.3+dfsg-1_s390x.deb ... 139s Unpacking libfreetype6:s390x (2.13.3+dfsg-1) ... 139s Selecting previously unselected package fonts-dejavu-mono. 139s Preparing to unpack .../009-fonts-dejavu-mono_2.37-8_all.deb ... 139s Unpacking fonts-dejavu-mono (2.37-8) ... 139s Selecting previously unselected package fonts-dejavu-core. 139s Preparing to unpack .../010-fonts-dejavu-core_2.37-8_all.deb ... 139s Unpacking fonts-dejavu-core (2.37-8) ... 139s Selecting previously unselected package libfontenc1:s390x. 139s Preparing to unpack .../011-libfontenc1_1%3a1.1.8-1build1_s390x.deb ... 139s Unpacking libfontenc1:s390x (1:1.1.8-1build1) ... 139s Selecting previously unselected package x11-common. 139s Preparing to unpack .../012-x11-common_1%3a7.7+23ubuntu3_all.deb ... 139s Unpacking x11-common (1:7.7+23ubuntu3) ... 139s Selecting previously unselected package xfonts-encodings. 139s Preparing to unpack .../013-xfonts-encodings_1%3a1.0.5-0ubuntu2_all.deb ... 139s Unpacking xfonts-encodings (1:1.0.5-0ubuntu2) ... 139s Selecting previously unselected package xfonts-utils. 139s Preparing to unpack .../014-xfonts-utils_1%3a7.7+7_s390x.deb ... 139s Unpacking xfonts-utils (1:7.7+7) ... 139s Selecting previously unselected package fonts-urw-base35. 139s Preparing to unpack .../015-fonts-urw-base35_20200910-8_all.deb ... 139s Unpacking fonts-urw-base35 (20200910-8) ... 139s Selecting previously unselected package fontconfig-config. 139s Preparing to unpack .../016-fontconfig-config_2.15.0-1.1ubuntu2_s390x.deb ... 139s Unpacking fontconfig-config (2.15.0-1.1ubuntu2) ... 139s Selecting previously unselected package libfontconfig1:s390x. 139s Preparing to unpack .../017-libfontconfig1_2.15.0-1.1ubuntu2_s390x.deb ... 139s Unpacking libfontconfig1:s390x (2.15.0-1.1ubuntu2) ... 139s Selecting previously unselected package libxrender1:s390x. 139s Preparing to unpack .../018-libxrender1_1%3a0.9.10-1.1build1_s390x.deb ... 139s Unpacking libxrender1:s390x (1:0.9.10-1.1build1) ... 139s Selecting previously unselected package libxft2:s390x. 139s Preparing to unpack .../019-libxft2_2.3.6-1build1_s390x.deb ... 139s Unpacking libxft2:s390x (2.3.6-1build1) ... 139s Selecting previously unselected package libxss1:s390x. 139s Preparing to unpack .../020-libxss1_1%3a1.2.3-1build3_s390x.deb ... 139s Unpacking libxss1:s390x (1:1.2.3-1build3) ... 139s Selecting previously unselected package libtk8.6:s390x. 139s Preparing to unpack .../021-libtk8.6_8.6.15-1_s390x.deb ... 139s Unpacking libtk8.6:s390x (8.6.15-1) ... 139s Selecting previously unselected package tk8.6-blt2.5. 139s Preparing to unpack .../022-tk8.6-blt2.5_2.5.3+dfsg-7build1_s390x.deb ... 139s Unpacking tk8.6-blt2.5 (2.5.3+dfsg-7build1) ... 139s Selecting previously unselected package blt. 139s Preparing to unpack .../023-blt_2.5.3+dfsg-7build1_s390x.deb ... 139s Unpacking blt (2.5.3+dfsg-7build1) ... 139s Selecting previously unselected package libisl23:s390x. 139s Preparing to unpack .../024-libisl23_0.27-1_s390x.deb ... 139s Unpacking libisl23:s390x (0.27-1) ... 139s Selecting previously unselected package libmpc3:s390x. 139s Preparing to unpack .../025-libmpc3_1.3.1-1build2_s390x.deb ... 139s Unpacking libmpc3:s390x (1.3.1-1build2) ... 139s Selecting previously unselected package cpp-14-s390x-linux-gnu. 139s Preparing to unpack .../026-cpp-14-s390x-linux-gnu_14.2.0-8ubuntu1_s390x.deb ... 139s Unpacking cpp-14-s390x-linux-gnu (14.2.0-8ubuntu1) ... 139s Selecting previously unselected package cpp-14. 140s Preparing to unpack .../027-cpp-14_14.2.0-8ubuntu1_s390x.deb ... 140s Unpacking cpp-14 (14.2.0-8ubuntu1) ... 140s Selecting previously unselected package cpp-s390x-linux-gnu. 140s Preparing to unpack .../028-cpp-s390x-linux-gnu_4%3a14.1.0-2ubuntu1_s390x.deb ... 140s Unpacking cpp-s390x-linux-gnu (4:14.1.0-2ubuntu1) ... 140s Selecting previously unselected package cpp. 140s Preparing to unpack .../029-cpp_4%3a14.1.0-2ubuntu1_s390x.deb ... 140s Unpacking cpp (4:14.1.0-2ubuntu1) ... 140s Selecting previously unselected package libcc1-0:s390x. 140s Preparing to unpack .../030-libcc1-0_14.2.0-8ubuntu1_s390x.deb ... 140s Unpacking libcc1-0:s390x (14.2.0-8ubuntu1) ... 140s Selecting previously unselected package libgomp1:s390x. 140s Preparing to unpack .../031-libgomp1_14.2.0-8ubuntu1_s390x.deb ... 140s Unpacking libgomp1:s390x (14.2.0-8ubuntu1) ... 140s Selecting previously unselected package libitm1:s390x. 140s Preparing to unpack .../032-libitm1_14.2.0-8ubuntu1_s390x.deb ... 140s Unpacking libitm1:s390x (14.2.0-8ubuntu1) ... 140s Selecting previously unselected package libasan8:s390x. 140s Preparing to unpack .../033-libasan8_14.2.0-8ubuntu1_s390x.deb ... 140s Unpacking libasan8:s390x (14.2.0-8ubuntu1) ... 140s Selecting previously unselected package libubsan1:s390x. 140s Preparing to unpack .../034-libubsan1_14.2.0-8ubuntu1_s390x.deb ... 140s Unpacking libubsan1:s390x (14.2.0-8ubuntu1) ... 140s Selecting previously unselected package libgcc-14-dev:s390x. 140s Preparing to unpack .../035-libgcc-14-dev_14.2.0-8ubuntu1_s390x.deb ... 140s Unpacking libgcc-14-dev:s390x (14.2.0-8ubuntu1) ... 140s Selecting previously unselected package gcc-14-s390x-linux-gnu. 140s Preparing to unpack .../036-gcc-14-s390x-linux-gnu_14.2.0-8ubuntu1_s390x.deb ... 140s Unpacking gcc-14-s390x-linux-gnu (14.2.0-8ubuntu1) ... 140s Selecting previously unselected package gcc-14. 140s Preparing to unpack .../037-gcc-14_14.2.0-8ubuntu1_s390x.deb ... 140s Unpacking gcc-14 (14.2.0-8ubuntu1) ... 140s Selecting previously unselected package gcc-s390x-linux-gnu. 140s Preparing to unpack .../038-gcc-s390x-linux-gnu_4%3a14.1.0-2ubuntu1_s390x.deb ... 140s Unpacking gcc-s390x-linux-gnu (4:14.1.0-2ubuntu1) ... 140s Selecting previously unselected package gcc. 140s Preparing to unpack .../039-gcc_4%3a14.1.0-2ubuntu1_s390x.deb ... 140s Unpacking gcc (4:14.1.0-2ubuntu1) ... 140s Selecting previously unselected package libstdc++-14-dev:s390x. 140s Preparing to unpack .../040-libstdc++-14-dev_14.2.0-8ubuntu1_s390x.deb ... 140s Unpacking libstdc++-14-dev:s390x (14.2.0-8ubuntu1) ... 140s Selecting previously unselected package g++-14-s390x-linux-gnu. 140s Preparing to unpack .../041-g++-14-s390x-linux-gnu_14.2.0-8ubuntu1_s390x.deb ... 140s Unpacking g++-14-s390x-linux-gnu (14.2.0-8ubuntu1) ... 140s Selecting previously unselected package g++-14. 140s Preparing to unpack .../042-g++-14_14.2.0-8ubuntu1_s390x.deb ... 140s Unpacking g++-14 (14.2.0-8ubuntu1) ... 140s Selecting previously unselected package g++-s390x-linux-gnu. 140s Preparing to unpack .../043-g++-s390x-linux-gnu_4%3a14.1.0-2ubuntu1_s390x.deb ... 140s Unpacking g++-s390x-linux-gnu (4:14.1.0-2ubuntu1) ... 140s Selecting previously unselected package g++. 140s Preparing to unpack .../044-g++_4%3a14.1.0-2ubuntu1_s390x.deb ... 140s Unpacking g++ (4:14.1.0-2ubuntu1) ... 140s Selecting previously unselected package build-essential. 140s Preparing to unpack .../045-build-essential_12.10ubuntu1_s390x.deb ... 140s Unpacking build-essential (12.10ubuntu1) ... 140s Selecting previously unselected package cython3. 140s Preparing to unpack .../046-cython3_3.0.11+dfsg-1ubuntu1_s390x.deb ... 140s Unpacking cython3 (3.0.11+dfsg-1ubuntu1) ... 140s Selecting previously unselected package libdebhelper-perl. 140s Preparing to unpack .../047-libdebhelper-perl_13.20ubuntu1_all.deb ... 140s Unpacking libdebhelper-perl (13.20ubuntu1) ... 140s Selecting previously unselected package libtool. 140s Preparing to unpack .../048-libtool_2.4.7-7build1_all.deb ... 140s Unpacking libtool (2.4.7-7build1) ... 140s Selecting previously unselected package dh-autoreconf. 140s Preparing to unpack .../049-dh-autoreconf_20_all.deb ... 140s Unpacking dh-autoreconf (20) ... 140s Selecting previously unselected package libarchive-zip-perl. 140s Preparing to unpack .../050-libarchive-zip-perl_1.68-1_all.deb ... 140s Unpacking libarchive-zip-perl (1.68-1) ... 140s Selecting previously unselected package libfile-stripnondeterminism-perl. 140s Preparing to unpack .../051-libfile-stripnondeterminism-perl_1.14.0-1_all.deb ... 140s Unpacking libfile-stripnondeterminism-perl (1.14.0-1) ... 140s Selecting previously unselected package dh-strip-nondeterminism. 140s Preparing to unpack .../052-dh-strip-nondeterminism_1.14.0-1_all.deb ... 140s Unpacking dh-strip-nondeterminism (1.14.0-1) ... 140s Selecting previously unselected package debugedit. 140s Preparing to unpack .../053-debugedit_1%3a5.1-1_s390x.deb ... 140s Unpacking debugedit (1:5.1-1) ... 140s Selecting previously unselected package dwz. 140s Preparing to unpack .../054-dwz_0.15-1build6_s390x.deb ... 140s Unpacking dwz (0.15-1build6) ... 140s Selecting previously unselected package gettext. 140s Preparing to unpack .../055-gettext_0.22.5-2_s390x.deb ... 140s Unpacking gettext (0.22.5-2) ... 140s Selecting previously unselected package intltool-debian. 140s Preparing to unpack .../056-intltool-debian_0.35.0+20060710.6_all.deb ... 140s Unpacking intltool-debian (0.35.0+20060710.6) ... 140s Selecting previously unselected package po-debconf. 140s Preparing to unpack .../057-po-debconf_1.0.21+nmu1_all.deb ... 140s Unpacking po-debconf (1.0.21+nmu1) ... 141s Selecting previously unselected package debhelper. 141s Preparing to unpack .../058-debhelper_13.20ubuntu1_all.deb ... 141s Unpacking debhelper (13.20ubuntu1) ... 141s Selecting previously unselected package dh-python. 141s Preparing to unpack .../059-dh-python_6.20241024_all.deb ... 141s Unpacking dh-python (6.20241024) ... 141s Selecting previously unselected package xml-core. 141s Preparing to unpack .../060-xml-core_0.19_all.deb ... 141s Unpacking xml-core (0.19) ... 141s Selecting previously unselected package docutils-common. 141s Preparing to unpack .../061-docutils-common_0.21.2+dfsg-2_all.deb ... 141s Unpacking docutils-common (0.21.2+dfsg-2) ... 141s Selecting previously unselected package fonts-font-awesome. 141s Preparing to unpack .../062-fonts-font-awesome_5.0.10+really4.7.0~dfsg-4.1_all.deb ... 141s Unpacking fonts-font-awesome (5.0.10+really4.7.0~dfsg-4.1) ... 141s Selecting previously unselected package fonts-lyx. 141s Preparing to unpack .../063-fonts-lyx_2.4.2.1-1_all.deb ... 141s Unpacking fonts-lyx (2.4.2.1-1) ... 141s Selecting previously unselected package fonts-mathjax. 141s Preparing to unpack .../064-fonts-mathjax_2.7.9+dfsg-1_all.deb ... 141s Unpacking fonts-mathjax (2.7.9+dfsg-1) ... 141s Selecting previously unselected package libaec0:s390x. 141s Preparing to unpack .../065-libaec0_1.1.3-1_s390x.deb ... 141s Unpacking libaec0:s390x (1.1.3-1) ... 141s Selecting previously unselected package libblas3:s390x. 141s Preparing to unpack .../066-libblas3_3.12.0-3build2_s390x.deb ... 141s Unpacking libblas3:s390x (3.12.0-3build2) ... 141s Selecting previously unselected package libpixman-1-0:s390x. 141s Preparing to unpack .../067-libpixman-1-0_0.44.0-3_s390x.deb ... 141s Unpacking libpixman-1-0:s390x (0.44.0-3) ... 141s Selecting previously unselected package libxcb-render0:s390x. 141s Preparing to unpack .../068-libxcb-render0_1.17.0-2_s390x.deb ... 141s Unpacking libxcb-render0:s390x (1.17.0-2) ... 141s Selecting previously unselected package libxcb-shm0:s390x. 141s Preparing to unpack .../069-libxcb-shm0_1.17.0-2_s390x.deb ... 141s Unpacking libxcb-shm0:s390x (1.17.0-2) ... 141s Selecting previously unselected package libcairo2:s390x. 141s Preparing to unpack .../070-libcairo2_1.18.2-2_s390x.deb ... 141s Unpacking libcairo2:s390x (1.18.2-2) ... 141s Selecting previously unselected package libdeflate0:s390x. 141s Preparing to unpack .../071-libdeflate0_1.22-1_s390x.deb ... 141s Unpacking libdeflate0:s390x (1.22-1) ... 141s Selecting previously unselected package libexpat1-dev:s390x. 141s Preparing to unpack .../072-libexpat1-dev_2.6.2-2_s390x.deb ... 141s Unpacking libexpat1-dev:s390x (2.6.2-2) ... 141s Selecting previously unselected package libgfortran5:s390x. 141s Preparing to unpack .../073-libgfortran5_14.2.0-8ubuntu1_s390x.deb ... 141s Unpacking libgfortran5:s390x (14.2.0-8ubuntu1) ... 141s Selecting previously unselected package libgraphite2-3:s390x. 141s Preparing to unpack .../074-libgraphite2-3_1.3.14-2ubuntu1_s390x.deb ... 141s Unpacking libgraphite2-3:s390x (1.3.14-2ubuntu1) ... 141s Selecting previously unselected package libharfbuzz0b:s390x. 141s Preparing to unpack .../075-libharfbuzz0b_10.0.1-1_s390x.deb ... 141s Unpacking libharfbuzz0b:s390x (10.0.1-1) ... 141s Selecting previously unselected package libsz2:s390x. 141s Preparing to unpack .../076-libsz2_1.1.3-1_s390x.deb ... 141s Unpacking libsz2:s390x (1.1.3-1) ... 141s Selecting previously unselected package libhdf5-103-1t64:s390x. 141s Preparing to unpack .../077-libhdf5-103-1t64_1.10.10+repack-4ubuntu3_s390x.deb ... 141s Unpacking libhdf5-103-1t64:s390x (1.10.10+repack-4ubuntu3) ... 141s Selecting previously unselected package libhdf5-hl-100t64:s390x. 141s Preparing to unpack .../078-libhdf5-hl-100t64_1.10.10+repack-4ubuntu3_s390x.deb ... 141s Unpacking libhdf5-hl-100t64:s390x (1.10.10+repack-4ubuntu3) ... 141s Selecting previously unselected package libimagequant0:s390x. 141s Preparing to unpack .../079-libimagequant0_2.18.0-1build1_s390x.deb ... 141s Unpacking libimagequant0:s390x (2.18.0-1build1) ... 141s Selecting previously unselected package libjpeg-turbo8:s390x. 141s Preparing to unpack .../080-libjpeg-turbo8_2.1.5-2ubuntu2_s390x.deb ... 141s Unpacking libjpeg-turbo8:s390x (2.1.5-2ubuntu2) ... 141s Selecting previously unselected package libjpeg8:s390x. 141s Preparing to unpack .../081-libjpeg8_8c-2ubuntu11_s390x.deb ... 141s Unpacking libjpeg8:s390x (8c-2ubuntu11) ... 141s Selecting previously unselected package libjs-jquery. 141s Preparing to unpack .../082-libjs-jquery_3.6.1+dfsg+~3.5.14-1_all.deb ... 141s Unpacking libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... 141s Selecting previously unselected package libjs-jquery-ui. 141s Preparing to unpack .../083-libjs-jquery-ui_1.13.2+dfsg-1_all.deb ... 141s Unpacking libjs-jquery-ui (1.13.2+dfsg-1) ... 141s Selecting previously unselected package libjs-underscore. 141s Preparing to unpack .../084-libjs-underscore_1.13.4~dfsg+~1.11.4-3_all.deb ... 141s Unpacking libjs-underscore (1.13.4~dfsg+~1.11.4-3) ... 141s Selecting previously unselected package libjs-sphinxdoc. 141s Preparing to unpack .../085-libjs-sphinxdoc_7.4.7-4_all.deb ... 141s Unpacking libjs-sphinxdoc (7.4.7-4) ... 141s Selecting previously unselected package libjson-perl. 141s Preparing to unpack .../086-libjson-perl_4.10000-1_all.deb ... 141s Unpacking libjson-perl (4.10000-1) ... 141s Selecting previously unselected package liblapack3:s390x. 141s Preparing to unpack .../087-liblapack3_3.12.0-3build2_s390x.deb ... 141s Unpacking liblapack3:s390x (3.12.0-3build2) ... 141s Selecting previously unselected package liblbfgsb0:s390x. 141s Preparing to unpack .../088-liblbfgsb0_3.0+dfsg.4-1build1_s390x.deb ... 141s Unpacking liblbfgsb0:s390x (3.0+dfsg.4-1build1) ... 141s Selecting previously unselected package liblcms2-2:s390x. 141s Preparing to unpack .../089-liblcms2-2_2.16-2_s390x.deb ... 141s Unpacking liblcms2-2:s390x (2.16-2) ... 141s Selecting previously unselected package liblzf1:s390x. 141s Preparing to unpack .../090-liblzf1_3.6-4_s390x.deb ... 141s Unpacking liblzf1:s390x (3.6-4) ... 141s Selecting previously unselected package libnetcdf19t64:s390x. 141s Preparing to unpack .../091-libnetcdf19t64_1%3a4.9.2-6ubuntu1_s390x.deb ... 141s Unpacking libnetcdf19t64:s390x (1:4.9.2-6ubuntu1) ... 141s Selecting previously unselected package zlib1g-dev:s390x. 141s Preparing to unpack .../092-zlib1g-dev_1%3a1.3.dfsg+really1.3.1-1ubuntu1_s390x.deb ... 141s Unpacking zlib1g-dev:s390x (1:1.3.dfsg+really1.3.1-1ubuntu1) ... 141s Selecting previously unselected package libpython3.12-dev:s390x. 141s Preparing to unpack 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.../098-libsharpyuv0_1.4.0-0.1_s390x.deb ... 141s Unpacking libsharpyuv0:s390x (1.4.0-0.1) ... 141s Selecting previously unselected package libjbig0:s390x. 141s Preparing to unpack .../099-libjbig0_2.1-6.1ubuntu2_s390x.deb ... 141s Unpacking libjbig0:s390x (2.1-6.1ubuntu2) ... 141s Selecting previously unselected package libwebp7:s390x. 141s Preparing to unpack .../100-libwebp7_1.4.0-0.1_s390x.deb ... 141s Unpacking libwebp7:s390x (1.4.0-0.1) ... 141s Selecting previously unselected package libtiff6:s390x. 141s Preparing to unpack .../101-libtiff6_4.5.1+git230720-4ubuntu4_s390x.deb ... 141s Unpacking libtiff6:s390x (4.5.1+git230720-4ubuntu4) ... 141s Selecting previously unselected package libwebpdemux2:s390x. 141s Preparing to unpack .../102-libwebpdemux2_1.4.0-0.1_s390x.deb ... 141s Unpacking libwebpdemux2:s390x (1.4.0-0.1) ... 141s Selecting previously unselected package libwebpmux3:s390x. 141s Preparing to unpack .../103-libwebpmux3_1.4.0-0.1_s390x.deb ... 141s Unpacking libwebpmux3:s390x (1.4.0-0.1) ... 142s Selecting previously unselected package libxslt1.1:s390x. 142s Preparing to unpack .../104-libxslt1.1_1.1.39-0exp1ubuntu1_s390x.deb ... 142s Unpacking libxslt1.1:s390x (1.1.39-0exp1ubuntu1) ... 142s Selecting previously unselected package python3-packaging. 142s Preparing to unpack .../105-python3-packaging_24.1-1_all.deb ... 142s Unpacking python3-packaging (24.1-1) ... 142s Selecting previously unselected package python3-pyproject-hooks. 142s Preparing to unpack .../106-python3-pyproject-hooks_1.2.0-1_all.deb ... 142s Unpacking python3-pyproject-hooks (1.2.0-1) ... 142s Selecting previously unselected package python3-toml. 142s Preparing to unpack .../107-python3-toml_0.10.2-1_all.deb ... 142s Unpacking python3-toml (0.10.2-1) ... 142s Selecting previously unselected package python3-wheel. 142s Preparing to unpack .../108-python3-wheel_0.44.0-1_all.deb ... 142s Unpacking python3-wheel (0.44.0-1) ... 142s Selecting previously unselected package python3-build. 142s Preparing to unpack .../109-python3-build_1.2.2-1_all.deb ... 142s Unpacking python3-build (1.2.2-1) ... 142s Selecting previously unselected package python3-installer. 142s Preparing to unpack .../110-python3-installer_0.7.0+dfsg1-3_all.deb ... 142s Unpacking python3-installer (0.7.0+dfsg1-3) ... 142s Selecting previously unselected package pybuild-plugin-pyproject. 142s Preparing to unpack .../111-pybuild-plugin-pyproject_6.20241024_all.deb ... 142s Unpacking pybuild-plugin-pyproject (6.20241024) ... 142s Selecting previously unselected package python-matplotlib-data. 142s Preparing to unpack .../112-python-matplotlib-data_3.8.3-3_all.deb ... 142s Unpacking python-matplotlib-data (3.8.3-3) ... 142s Selecting previously unselected package libjs-mathjax. 142s Preparing to unpack .../113-libjs-mathjax_2.7.9+dfsg-1_all.deb ... 142s Unpacking libjs-mathjax (2.7.9+dfsg-1) ... 142s Selecting previously unselected package python-mdanalysis-doc. 142s Preparing to unpack .../114-python-mdanalysis-doc_2.7.0-5_all.deb ... 142s Unpacking python-mdanalysis-doc (2.7.0-5) ... 142s Selecting previously unselected package python3-all. 142s Preparing to unpack .../115-python3-all_3.12.6-0ubuntu1_s390x.deb ... 142s Unpacking python3-all (3.12.6-0ubuntu1) ... 142s Selecting previously unselected package python3.12-dev. 142s Preparing to unpack .../116-python3.12-dev_3.12.7-3_s390x.deb ... 142s Unpacking python3.12-dev (3.12.7-3) ... 142s Selecting previously unselected package python3-dev. 142s Preparing to unpack .../117-python3-dev_3.12.6-0ubuntu1_s390x.deb ... 142s Unpacking python3-dev (3.12.6-0ubuntu1) ... 142s Selecting previously unselected package python3-all-dev. 142s Preparing to unpack .../118-python3-all-dev_3.12.6-0ubuntu1_s390x.deb ... 142s Unpacking python3-all-dev (3.12.6-0ubuntu1) ... 142s Selecting previously unselected package python3-appdirs. 142s Preparing to unpack .../119-python3-appdirs_1.4.4-4_all.deb ... 142s Unpacking python3-appdirs (1.4.4-4) ... 142s Selecting previously unselected package python3-numpy. 142s Preparing to unpack .../120-python3-numpy_1%3a1.26.4+ds-11ubuntu1_s390x.deb ... 142s Unpacking python3-numpy (1:1.26.4+ds-11ubuntu1) ... 142s Selecting previously unselected package python3.12-tk. 142s Preparing to unpack .../121-python3.12-tk_3.12.7-3_s390x.deb ... 142s Unpacking python3.12-tk (3.12.7-3) ... 142s Selecting previously unselected package python3-tk:s390x. 142s Preparing to unpack .../122-python3-tk_3.12.6-1ubuntu1_s390x.deb ... 142s Unpacking python3-tk:s390x (3.12.6-1ubuntu1) ... 142s Selecting previously unselected package python3-pil.imagetk:s390x. 142s Preparing to unpack .../123-python3-pil.imagetk_10.4.0-1ubuntu1_s390x.deb ... 142s Unpacking python3-pil.imagetk:s390x (10.4.0-1ubuntu1) ... 142s Selecting previously unselected package libopenjp2-7:s390x. 142s Preparing to unpack .../124-libopenjp2-7_2.5.0-2ubuntu1_s390x.deb ... 142s Unpacking libopenjp2-7:s390x (2.5.0-2ubuntu1) ... 142s Selecting previously unselected package python3-pil:s390x. 142s Preparing to unpack .../125-python3-pil_10.4.0-1ubuntu1_s390x.deb ... 142s Unpacking python3-pil:s390x (10.4.0-1ubuntu1) ... 142s Selecting previously unselected package python3-cairo. 142s Preparing to unpack .../126-python3-cairo_1.26.1-2_s390x.deb ... 142s Unpacking python3-cairo (1.26.1-2) ... 142s Selecting previously unselected package python3-freetype. 142s Preparing to unpack .../127-python3-freetype_2.5.1-1_all.deb ... 142s Unpacking python3-freetype (2.5.1-1) ... 142s Selecting previously unselected package python3-rlpycairo. 142s Preparing to unpack .../128-python3-rlpycairo_0.3.0-3_all.deb ... 142s Unpacking python3-rlpycairo (0.3.0-3) ... 142s Selecting previously unselected package python3-reportlab. 142s Preparing to unpack .../129-python3-reportlab_4.2.5-1_all.deb ... 142s Unpacking python3-reportlab (4.2.5-1) ... 143s Selecting previously unselected package w3c-sgml-lib. 143s Preparing to unpack .../130-w3c-sgml-lib_1.3-3_all.deb ... 143s Unpacking w3c-sgml-lib (1.3-3) ... 143s Selecting previously unselected package python3-biopython. 143s Preparing to unpack .../131-python3-biopython_1.84+dfsg-4_s390x.deb ... 143s Unpacking python3-biopython (1.84+dfsg-4) ... 143s Selecting previously unselected package python3-brotli. 143s Preparing to unpack .../132-python3-brotli_1.1.0-2build2_s390x.deb ... 143s Unpacking python3-brotli (1.1.0-2build2) ... 143s Selecting previously unselected package python3-cftime. 143s Preparing to unpack .../133-python3-cftime_1.6.4-1_s390x.deb ... 143s Unpacking python3-cftime (1.6.4-1) ... 143s Selecting previously unselected package python3-lxml:s390x. 143s Preparing to unpack .../134-python3-lxml_5.3.0-1_s390x.deb ... 143s Unpacking python3-lxml:s390x (5.3.0-1) ... 143s Selecting previously unselected package python3-citeproc. 143s Preparing to unpack .../135-python3-citeproc_0.6.0-3_all.deb ... 143s Unpacking python3-citeproc (0.6.0-3) ... 143s Selecting previously unselected package python3-contourpy. 143s Preparing to unpack .../136-python3-contourpy_1.3.0-2_s390x.deb ... 143s Unpacking python3-contourpy (1.3.0-2) ... 143s Selecting previously unselected package python3-cycler. 143s Preparing to unpack .../137-python3-cycler_0.12.1-1_all.deb ... 143s Unpacking python3-cycler (0.12.1-1) ... 143s Selecting previously unselected package python3-six. 143s Preparing to unpack .../138-python3-six_1.16.0-7_all.deb ... 143s Unpacking python3-six (1.16.0-7) ... 143s Selecting previously unselected package python3-dateutil. 143s Preparing to unpack .../139-python3-dateutil_2.9.0-2_all.deb ... 143s Unpacking python3-dateutil (2.9.0-2) ... 143s Selecting previously unselected package python3-decorator. 143s Preparing to unpack .../140-python3-decorator_5.1.1-5_all.deb ... 143s Unpacking python3-decorator (5.1.1-5) ... 143s Selecting previously unselected package python3-defusedxml. 143s Preparing to unpack .../141-python3-defusedxml_0.7.1-2_all.deb ... 143s Unpacking python3-defusedxml (0.7.1-2) ... 143s Selecting previously unselected package python3-roman. 143s Preparing to unpack .../142-python3-roman_4.2-1_all.deb ... 143s Unpacking python3-roman (4.2-1) ... 143s Selecting previously unselected package python3-docutils. 143s Preparing to unpack .../143-python3-docutils_0.21.2+dfsg-2_all.deb ... 143s Unpacking python3-docutils (0.21.2+dfsg-2) ... 143s Selecting previously unselected package python3-looseversion. 143s Preparing to unpack .../144-python3-looseversion_1.3.0-3_all.deb ... 143s Unpacking python3-looseversion (1.3.0-3) ... 143s Selecting previously unselected package python3-duecredit. 143s Preparing to unpack .../145-python3-duecredit_0.10.2-2_all.deb ... 143s Unpacking python3-duecredit (0.10.2-2) ... 143s Selecting previously unselected package python3-monotonic. 143s Preparing to unpack .../146-python3-monotonic_1.6-2_all.deb ... 143s Unpacking python3-monotonic (1.6-2) ... 143s Selecting previously unselected package python3-fasteners. 143s Preparing to unpack .../147-python3-fasteners_0.18-2_all.deb ... 143s Unpacking python3-fasteners (0.18-2) ... 143s Selecting previously unselected package python3-scipy. 143s Preparing to unpack .../148-python3-scipy_1.13.1-5_s390x.deb ... 143s Unpacking python3-scipy (1.13.1-5) ... 143s Selecting previously unselected package python3-ufolib2. 143s Preparing to unpack .../149-python3-ufolib2_0.16.1+dfsg1-1_all.deb ... 143s Unpacking python3-ufolib2 (0.16.1+dfsg1-1) ... 143s Selecting previously unselected package python3-mpmath. 143s Preparing to unpack .../150-python3-mpmath_1.3.0-1_all.deb ... 143s Unpacking python3-mpmath (1.3.0-1) ... 143s Selecting previously unselected package python3-sympy. 143s Preparing to unpack .../151-python3-sympy_1.13.3-1_all.deb ... 143s Unpacking python3-sympy (1.13.3-1) ... 143s Selecting previously unselected package python3-tz. 143s Preparing to unpack .../152-python3-tz_2024.1-2_all.deb ... 143s Unpacking python3-tz (2024.1-2) ... 143s Selecting previously unselected package python3-fs. 143s Preparing to unpack .../153-python3-fs_2.4.16-4_all.deb ... 143s Unpacking python3-fs (2.4.16-4) ... 143s Selecting previously unselected package python3-lz4. 143s Preparing to unpack .../154-python3-lz4_4.0.2+dfsg-1build4_s390x.deb ... 143s Unpacking python3-lz4 (4.0.2+dfsg-1build4) ... 143s Selecting previously unselected package python3-unicodedata2. 143s Preparing to unpack .../155-python3-unicodedata2_15.1.0+ds-1build1_s390x.deb ... 143s Unpacking python3-unicodedata2 (15.1.0+ds-1build1) ... 143s Selecting previously unselected package unicode-data. 143s Preparing to unpack .../156-unicode-data_15.1.0-1_all.deb ... 143s Unpacking unicode-data (15.1.0-1) ... 144s Selecting previously unselected package python3-fonttools. 144s Preparing to unpack .../157-python3-fonttools_4.46.0-1build2_s390x.deb ... 144s Unpacking python3-fonttools (4.46.0-1build2) ... 144s Selecting previously unselected package sphinx-rtd-theme-common. 144s Preparing to unpack .../158-sphinx-rtd-theme-common_3.0.1+dfsg-1_all.deb ... 144s Unpacking sphinx-rtd-theme-common (3.0.1+dfsg-1) ... 144s Selecting previously unselected package python3-mrcfile. 144s Preparing to unpack .../159-python3-mrcfile_1.5.3-3_all.deb ... 144s Unpacking python3-mrcfile (1.5.3-3) ... 144s Selecting previously unselected package python3-griddataformats. 144s Preparing to unpack .../160-python3-griddataformats_1.0.2-2_all.deb ... 144s Unpacking python3-griddataformats (1.0.2-2) ... 144s Selecting previously unselected package python3-h5py-serial. 144s Preparing to unpack .../161-python3-h5py-serial_3.11.0-5ubuntu1_s390x.deb ... 144s Unpacking python3-h5py-serial (3.11.0-5ubuntu1) ... 144s Selecting previously unselected package python3-h5py. 144s Preparing to unpack .../162-python3-h5py_3.11.0-5ubuntu1_all.deb ... 144s Unpacking python3-h5py (3.11.0-5ubuntu1) ... 144s Selecting previously unselected package python3-sortedcontainers. 144s Preparing to unpack .../163-python3-sortedcontainers_2.4.0-2_all.deb ... 144s Unpacking python3-sortedcontainers (2.4.0-2) ... 144s Selecting previously unselected package python3-hypothesis. 144s Preparing to unpack .../164-python3-hypothesis_6.116.0-1_all.deb ... 144s Unpacking python3-hypothesis (6.116.0-1) ... 144s Selecting previously unselected package python3-imagesize. 144s Preparing to unpack .../165-python3-imagesize_1.4.1-1_all.deb ... 144s Unpacking python3-imagesize (1.4.1-1) ... 144s Selecting previously unselected package python3-iniconfig. 144s Preparing to unpack .../166-python3-iniconfig_1.1.1-2_all.deb ... 144s Unpacking python3-iniconfig (1.1.1-2) ... 144s Selecting previously unselected package python3-joblib. 144s Preparing to unpack .../167-python3-joblib_1.3.2-5_all.deb ... 144s Unpacking python3-joblib (1.3.2-5) ... 144s Selecting previously unselected package python3-kiwisolver. 144s 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144s Unpacking python3-mmtf (1.1.3-1) ... 144s Selecting previously unselected package python3-threadpoolctl. 144s Preparing to unpack .../174-python3-threadpoolctl_3.1.0-1_all.deb ... 144s Unpacking python3-threadpoolctl (3.1.0-1) ... 144s Selecting previously unselected package python3-tqdm. 144s Preparing to unpack .../175-python3-tqdm_4.67.0-1_all.deb ... 144s Unpacking python3-tqdm (4.67.0-1) ... 144s Selecting previously unselected package python3-mdanalysis. 144s Preparing to unpack .../176-python3-mdanalysis_2.7.0-5_s390x.deb ... 144s Unpacking python3-mdanalysis (2.7.0-5) ... 144s Selecting previously unselected package sphinx-common. 144s Preparing to unpack .../177-sphinx-common_7.4.7-4_all.deb ... 144s Unpacking sphinx-common (7.4.7-4) ... 144s Selecting previously unselected package python3-alabaster. 144s Preparing to unpack .../178-python3-alabaster_0.7.16-0.1_all.deb ... 144s Unpacking python3-alabaster (0.7.16-0.1) ... 144s Selecting previously unselected package python3-snowballstemmer. 144s Preparing to unpack .../179-python3-snowballstemmer_2.2.0-4build1_all.deb ... 144s Unpacking python3-snowballstemmer (2.2.0-4build1) ... 144s Selecting previously unselected package python3-sphinx. 144s Preparing to unpack .../180-python3-sphinx_7.4.7-4_all.deb ... 144s Unpacking python3-sphinx (7.4.7-4) ... 144s Selecting previously unselected package python3-sphinxcontrib.jquery. 144s Preparing to unpack .../181-python3-sphinxcontrib.jquery_4.1-5_all.deb ... 144s Unpacking python3-sphinxcontrib.jquery (4.1-5) ... 144s Selecting previously unselected package python3-sphinx-rtd-theme. 144s Preparing to unpack .../182-python3-sphinx-rtd-theme_3.0.1+dfsg-1_all.deb ... 144s Unpacking python3-sphinx-rtd-theme (3.0.1+dfsg-1) ... 144s Selecting previously unselected package python3-msmb-theme. 144s Preparing to unpack .../183-python3-msmb-theme_1.2.0-4_all.deb ... 144s Unpacking python3-msmb-theme (1.2.0-4) ... 144s Selecting previously unselected package python3-netcdf4. 144s Preparing to unpack .../184-python3-netcdf4_1.7.2-1_s390x.deb ... 144s Unpacking python3-netcdf4 (1.7.2-1) ... 144s Selecting previously unselected package python3-networkx. 144s Preparing to unpack .../185-python3-networkx_3.2.1-4ubuntu1_all.deb ... 144s Unpacking python3-networkx (3.2.1-4ubuntu1) ... 145s Selecting previously unselected package python3-pandas-lib:s390x. 145s Preparing to unpack .../186-python3-pandas-lib_2.2.3+dfsg-5_s390x.deb ... 145s Unpacking python3-pandas-lib:s390x (2.2.3+dfsg-5) ... 145s Selecting previously unselected package python3-pandas. 145s Preparing to unpack .../187-python3-pandas_2.2.3+dfsg-5_all.deb ... 145s Unpacking python3-pandas (2.2.3+dfsg-5) ... 145s Selecting previously unselected package python3-pluggy. 145s Preparing to unpack .../188-python3-pluggy_1.5.0-1_all.deb ... 145s Unpacking python3-pluggy (1.5.0-1) ... 145s Selecting previously unselected package python3-pybtex. 145s Preparing to unpack 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libxcb-shm0:s390x (1.17.0-2) ... 146s Setting up python3-sortedcontainers (2.4.0-2) ... 147s Setting up libgomp1:s390x (14.2.0-8ubuntu1) ... 147s Setting up python3-networkx (3.2.1-4ubuntu1) ... 148s Setting up python3-wheel (0.44.0-1) ... 148s Setting up libjbig0:s390x (2.1-6.1ubuntu2) ... 148s Setting up python3-mda-xdrlib (0.2.0-3) ... 148s Setting up libaec0:s390x (1.1.3-1) ... 148s Setting up python3-tz (2024.1-2) ... 148s Setting up python3-monotonic (1.6-2) ... 148s Setting up unicode-data (15.1.0-1) ... 148s Setting up python3-six (1.16.0-7) ... 148s Setting up python3-roman (4.2-1) ... 148s Setting up python3-decorator (5.1.1-5) ... 148s Setting up libfontenc1:s390x (1:1.1.8-1build1) ... 148s Setting up autotools-dev (20220109.1) ... 148s Setting up libblas3:s390x (3.12.0-3build2) ... 148s update-alternatives: using /usr/lib/s390x-linux-gnu/blas/libblas.so.3 to provide /usr/lib/s390x-linux-gnu/libblas.so.3 (libblas.so.3-s390x-linux-gnu) in auto mode 148s Setting up 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Setting up python3-sympy (1.13.3-1) ... 159s Setting up liblapack3:s390x (3.12.0-3build2) ... 159s update-alternatives: using /usr/lib/s390x-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/s390x-linux-gnu/liblapack.so.3 (liblapack.so.3-s390x-linux-gnu) in auto mode 159s Setting up gettext (0.22.5-2) ... 159s Setting up pybuild-plugin-pyproject (6.20241024) ... 159s Setting up fontconfig-config (2.15.0-1.1ubuntu2) ... 159s Setting up python3-pytest (8.3.3-1) ... 159s Setting up libwebpdemux2:s390x (1.4.0-0.1) ... 159s Setting up python3-hypothesis (6.116.0-1) ... 160s Setting up libpython3.12-dev:s390x (3.12.7-3) ... 160s Setting up python3-freetype (2.5.1-1) ... 160s Setting up xfonts-utils (1:7.7+7) ... 160s Setting up intltool-debian (0.35.0+20060710.6) ... 160s Setting up python3-fs (2.4.16-4) ... 160s Setting up libjs-jquery-ui (1.13.2+dfsg-1) ... 160s Setting up libraqm0:s390x (0.10.1-1build1) ... 160s Setting up python3.12-dev (3.12.7-3) ... 160s Setting up python3-numpy 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(4.2.5-1) ... 176s Setting up g++-14 (14.2.0-8ubuntu1) ... 176s Setting up libtool (2.4.7-7build1) ... 176s Setting up gcc (4:14.1.0-2ubuntu1) ... 176s Setting up dh-autoreconf (20) ... 176s Setting up g++ (4:14.1.0-2ubuntu1) ... 176s update-alternatives: using /usr/bin/g++ to provide /usr/bin/c++ (c++) in auto mode 176s Setting up build-essential (12.10ubuntu1) ... 176s Setting up debhelper (13.20ubuntu1) ... 176s Setting up python3-ufolib2 (0.16.1+dfsg1-1) ... 176s Setting up python3-fonttools (4.46.0-1build2) ... 177s Setting up python3-matplotlib (3.8.3-3) ... 178s Setting up python3-mdanalysis (2.7.0-5) ... 179s Setting up python3-seaborn (0.13.2-4) ... 179s Processing triggers for man-db (2.12.1-3) ... 180s Processing triggers for install-info (7.1.1-1) ... 180s Processing triggers for libc-bin (2.40-1ubuntu3) ... 180s Processing triggers for sgml-base (1.31) ... 180s Setting up docutils-common (0.21.2+dfsg-2) ... 180s Setting up w3c-sgml-lib (1.3-3) ... 201s Setting up python3-biopython (1.84+dfsg-4) ... 202s Processing triggers for sgml-base (1.31) ... 202s Setting up python3-docutils (0.21.2+dfsg-2) ... 203s Setting up python3-pybtex-docutils (1.0.2-1) ... 203s Setting up python3-sphinx (7.4.7-4) ... 203s Setting up python3-sphinxcontrib.bibtex (2.6.2-1) ... 204s Setting up python3-sphinx-sitemap (2.6.0-1) ... 204s Setting up python3-sphinxcontrib.jquery (4.1-5) ... 204s Setting up python3-sphinx-rtd-theme (3.0.1+dfsg-1) ... 204s Setting up python3-msmb-theme (1.2.0-4) ... 204s Setting up autopkgtest-satdep (0) ... 208s (Reading database ... 81169 files and directories currently installed.) 208s Removing autopkgtest-satdep (0) ... 209s autopkgtest [16:22:07]: test test-mdanalysis: [----------------------- 209s skipping tests with SKIP_TEST_LIST=test_start_stop_step test_count_by_time test_rmsd test_mass_weighted test_custom_weighted test_ref_mobile_mass_mismapped test_time test_dt test_total_time test_iter test_last_frame test_frame_jump test_next_gives_second_frame test_set_time test_write_istart test_write_trajectory_atomgroup test_write_trajectory_universe test_Timestep_time test_rename_aux test_namdbin ref_reader25 ref_reader_extra_args25 209s ============================= test session starts ============================== 209s platform linux -- Python 3.12.7, pytest-8.3.3, pluggy-1.5.0 -- /usr/bin/python3.12 209s cachedir: .pytest_cache 209s hypothesis profile 'default' -> database=DirectoryBasedExampleDatabase(PosixPath('/tmp/autopkgtest.YRAxix/build.1X3/src/.hypothesis/examples')) 209s rootdir: /tmp/autopkgtest.YRAxix/build.1X3/src 209s plugins: typeguard-4.4.1, hypothesis-6.116.0 218s collecting ... collected 19229 items / 804 deselected / 6 skipped / 18425 selected 218s 218s testsuite/MDAnalysisTests/analysis/test_align.py::TestRotationMatrix::test_rotation_matrix_input[a0-b0-None-0.15785647734415692] PASSED [ 0%] 218s 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testsuite/MDAnalysisTests/analysis/test_base.py::Test_Results::test_existing_dict_attr[__hash__] PASSED [ 0%] 228s testsuite/MDAnalysisTests/analysis/test_base.py::Test_Results::test_existing_dict_attr[__init__] PASSED [ 0%] 228s testsuite/MDAnalysisTests/analysis/test_base.py::Test_Results::test_existing_dict_attr[__init_subclass__] PASSED [ 0%] 228s testsuite/MDAnalysisTests/analysis/test_base.py::Test_Results::test_existing_dict_attr[__ior__] PASSED [ 0%] 228s testsuite/MDAnalysisTests/analysis/test_base.py::Test_Results::test_existing_dict_attr[__iter__] PASSED [ 0%] 228s testsuite/MDAnalysisTests/analysis/test_base.py::Test_Results::test_existing_dict_attr[__le__] PASSED [ 0%] 228s testsuite/MDAnalysisTests/analysis/test_base.py::Test_Results::test_existing_dict_attr[__len__] PASSED [ 0%] 228s testsuite/MDAnalysisTests/analysis/test_base.py::Test_Results::test_existing_dict_attr[__lt__] PASSED [ 0%] 228s testsuite/MDAnalysisTests/analysis/test_base.py::Test_Results::test_existing_dict_attr[__module__] PASSED [ 0%] 228s testsuite/MDAnalysisTests/analysis/test_base.py::Test_Results::test_existing_dict_attr[__ne__] PASSED [ 0%] 228s testsuite/MDAnalysisTests/analysis/test_base.py::Test_Results::test_existing_dict_attr[__new__] PASSED [ 0%] 228s testsuite/MDAnalysisTests/analysis/test_base.py::Test_Results::test_existing_dict_attr[__or__] PASSED [ 0%] 228s testsuite/MDAnalysisTests/analysis/test_base.py::Test_Results::test_existing_dict_attr[__reduce__] PASSED [ 0%] 228s testsuite/MDAnalysisTests/analysis/test_base.py::Test_Results::test_existing_dict_attr[__reduce_ex__] PASSED [ 0%] 228s testsuite/MDAnalysisTests/analysis/test_base.py::Test_Results::test_existing_dict_attr[__repr__] PASSED [ 0%] 228s testsuite/MDAnalysisTests/analysis/test_base.py::Test_Results::test_existing_dict_attr[__reversed__] PASSED [ 0%] 228s testsuite/MDAnalysisTests/analysis/test_base.py::Test_Results::test_existing_dict_attr[__ror__] PASSED [ 0%] 228s testsuite/MDAnalysisTests/analysis/test_base.py::Test_Results::test_existing_dict_attr[__setattr__] PASSED [ 0%] 228s testsuite/MDAnalysisTests/analysis/test_base.py::Test_Results::test_existing_dict_attr[__setitem__] PASSED [ 0%] 228s testsuite/MDAnalysisTests/analysis/test_base.py::Test_Results::test_existing_dict_attr[__sizeof__] PASSED [ 0%] 228s testsuite/MDAnalysisTests/analysis/test_base.py::Test_Results::test_existing_dict_attr[__slots__] PASSED [ 0%] 228s testsuite/MDAnalysisTests/analysis/test_base.py::Test_Results::test_existing_dict_attr[__str__] PASSED [ 0%] 228s testsuite/MDAnalysisTests/analysis/test_base.py::Test_Results::test_existing_dict_attr[__subclasshook__] PASSED [ 0%] 228s testsuite/MDAnalysisTests/analysis/test_base.py::Test_Results::test_existing_dict_attr[__weakref__] PASSED [ 0%] 228s testsuite/MDAnalysisTests/analysis/test_base.py::Test_Results::test_existing_dict_attr[_abc_impl] PASSED [ 0%] 228s testsuite/MDAnalysisTests/analysis/test_base.py::Test_Results::test_existing_dict_attr[clear] PASSED [ 0%] 228s testsuite/MDAnalysisTests/analysis/test_base.py::Test_Results::test_existing_dict_attr[copy] PASSED [ 0%] 228s testsuite/MDAnalysisTests/analysis/test_base.py::Test_Results::test_existing_dict_attr[fromkeys] PASSED [ 0%] 228s testsuite/MDAnalysisTests/analysis/test_base.py::Test_Results::test_existing_dict_attr[get] PASSED [ 0%] 228s testsuite/MDAnalysisTests/analysis/test_base.py::Test_Results::test_existing_dict_attr[items] PASSED [ 0%] 228s testsuite/MDAnalysisTests/analysis/test_base.py::Test_Results::test_existing_dict_attr[keys] PASSED [ 0%] 228s testsuite/MDAnalysisTests/analysis/test_base.py::Test_Results::test_existing_dict_attr[pop] PASSED [ 0%] 228s testsuite/MDAnalysisTests/analysis/test_base.py::Test_Results::test_existing_dict_attr[popitem] PASSED [ 0%] 228s testsuite/MDAnalysisTests/analysis/test_base.py::Test_Results::test_existing_dict_attr[setdefault] PASSED [ 0%] 228s testsuite/MDAnalysisTests/analysis/test_base.py::Test_Results::test_existing_dict_attr[update] PASSED [ 0%] 228s testsuite/MDAnalysisTests/analysis/test_base.py::Test_Results::test_existing_dict_attr[values] PASSED [ 0%] 228s testsuite/MDAnalysisTests/analysis/test_base.py::Test_Results::test_existing_dict_attr[data] PASSED [ 0%] 228s testsuite/MDAnalysisTests/analysis/test_base.py::Test_Results::test_wrong_init_type[_MutableMapping__marker] PASSED [ 0%] 228s testsuite/MDAnalysisTests/analysis/test_base.py::Test_Results::test_wrong_init_type[__abstractmethods__] PASSED [ 0%] 228s testsuite/MDAnalysisTests/analysis/test_base.py::Test_Results::test_wrong_init_type[__class__] PASSED [ 0%] 228s testsuite/MDAnalysisTests/analysis/test_base.py::Test_Results::test_wrong_init_type[__class_getitem__] PASSED [ 0%] 228s testsuite/MDAnalysisTests/analysis/test_base.py::Test_Results::test_wrong_init_type[__contains__] PASSED [ 0%] 228s testsuite/MDAnalysisTests/analysis/test_base.py::Test_Results::test_wrong_init_type[__copy__] PASSED [ 0%] 228s testsuite/MDAnalysisTests/analysis/test_base.py::Test_Results::test_wrong_init_type[__delattr__] PASSED [ 0%] 228s testsuite/MDAnalysisTests/analysis/test_base.py::Test_Results::test_wrong_init_type[__delitem__] PASSED [ 0%] 228s testsuite/MDAnalysisTests/analysis/test_base.py::Test_Results::test_wrong_init_type[__dict__] PASSED [ 0%] 228s testsuite/MDAnalysisTests/analysis/test_base.py::Test_Results::test_wrong_init_type[__dir__] PASSED [ 0%] 228s testsuite/MDAnalysisTests/analysis/test_base.py::Test_Results::test_wrong_init_type[__doc__] PASSED [ 0%] 228s testsuite/MDAnalysisTests/analysis/test_base.py::Test_Results::test_wrong_init_type[__eq__] PASSED [ 0%] 228s testsuite/MDAnalysisTests/analysis/test_base.py::Test_Results::test_wrong_init_type[__format__] PASSED [ 0%] 228s testsuite/MDAnalysisTests/analysis/test_base.py::Test_Results::test_wrong_init_type[__ge__] PASSED [ 0%] 228s testsuite/MDAnalysisTests/analysis/test_base.py::Test_Results::test_wrong_init_type[__getattribute__] PASSED [ 0%] 228s testsuite/MDAnalysisTests/analysis/test_base.py::Test_Results::test_wrong_init_type[__getitem__] PASSED [ 0%] 228s testsuite/MDAnalysisTests/analysis/test_base.py::Test_Results::test_wrong_init_type[__getstate__] PASSED [ 0%] 228s testsuite/MDAnalysisTests/analysis/test_base.py::Test_Results::test_wrong_init_type[__gt__] PASSED [ 0%] 228s testsuite/MDAnalysisTests/analysis/test_base.py::Test_Results::test_wrong_init_type[__hash__] PASSED [ 0%] 228s testsuite/MDAnalysisTests/analysis/test_base.py::Test_Results::test_wrong_init_type[__init__] PASSED [ 0%] 228s testsuite/MDAnalysisTests/analysis/test_base.py::Test_Results::test_wrong_init_type[__init_subclass__] PASSED [ 0%] 228s testsuite/MDAnalysisTests/analysis/test_base.py::Test_Results::test_wrong_init_type[__ior__] PASSED [ 0%] 228s testsuite/MDAnalysisTests/analysis/test_base.py::Test_Results::test_wrong_init_type[__iter__] PASSED [ 0%] 228s testsuite/MDAnalysisTests/analysis/test_base.py::Test_Results::test_wrong_init_type[__le__] PASSED [ 0%] 228s testsuite/MDAnalysisTests/analysis/test_base.py::Test_Results::test_wrong_init_type[__len__] PASSED [ 0%] 228s testsuite/MDAnalysisTests/analysis/test_base.py::Test_Results::test_wrong_init_type[__lt__] PASSED [ 0%] 228s testsuite/MDAnalysisTests/analysis/test_base.py::Test_Results::test_wrong_init_type[__module__] PASSED [ 0%] 228s testsuite/MDAnalysisTests/analysis/test_base.py::Test_Results::test_wrong_init_type[__ne__] PASSED [ 0%] 228s testsuite/MDAnalysisTests/analysis/test_base.py::Test_Results::test_wrong_init_type[__new__] PASSED [ 0%] 228s testsuite/MDAnalysisTests/analysis/test_base.py::Test_Results::test_wrong_init_type[__or__] PASSED [ 0%] 228s testsuite/MDAnalysisTests/analysis/test_base.py::Test_Results::test_wrong_init_type[__reduce__] PASSED [ 0%] 228s testsuite/MDAnalysisTests/analysis/test_base.py::Test_Results::test_wrong_init_type[__reduce_ex__] PASSED [ 0%] 228s testsuite/MDAnalysisTests/analysis/test_base.py::Test_Results::test_wrong_init_type[__repr__] PASSED [ 0%] 228s testsuite/MDAnalysisTests/analysis/test_base.py::Test_Results::test_wrong_init_type[__reversed__] PASSED [ 0%] 228s testsuite/MDAnalysisTests/analysis/test_base.py::Test_Results::test_wrong_init_type[__ror__] PASSED [ 0%] 228s testsuite/MDAnalysisTests/analysis/test_base.py::Test_Results::test_wrong_init_type[__setattr__] PASSED [ 0%] 228s testsuite/MDAnalysisTests/analysis/test_base.py::Test_Results::test_wrong_init_type[__setitem__] PASSED [ 0%] 228s testsuite/MDAnalysisTests/analysis/test_base.py::Test_Results::test_wrong_init_type[__sizeof__] PASSED [ 0%] 228s testsuite/MDAnalysisTests/analysis/test_base.py::Test_Results::test_wrong_init_type[__slots__] PASSED [ 0%] 228s testsuite/MDAnalysisTests/analysis/test_base.py::Test_Results::test_wrong_init_type[__str__] PASSED [ 0%] 228s testsuite/MDAnalysisTests/analysis/test_base.py::Test_Results::test_wrong_init_type[__subclasshook__] PASSED [ 0%] 228s testsuite/MDAnalysisTests/analysis/test_base.py::Test_Results::test_wrong_init_type[__weakref__] PASSED [ 0%] 228s testsuite/MDAnalysisTests/analysis/test_base.py::Test_Results::test_wrong_init_type[_abc_impl] PASSED [ 0%] 228s testsuite/MDAnalysisTests/analysis/test_base.py::Test_Results::test_wrong_init_type[clear] PASSED [ 0%] 228s testsuite/MDAnalysisTests/analysis/test_base.py::Test_Results::test_wrong_init_type[copy] PASSED [ 0%] 228s testsuite/MDAnalysisTests/analysis/test_base.py::Test_Results::test_wrong_init_type[fromkeys] PASSED [ 0%] 228s testsuite/MDAnalysisTests/analysis/test_base.py::Test_Results::test_wrong_init_type[get] PASSED [ 0%] 228s testsuite/MDAnalysisTests/analysis/test_base.py::Test_Results::test_wrong_init_type[items] PASSED [ 0%] 228s testsuite/MDAnalysisTests/analysis/test_base.py::Test_Results::test_wrong_init_type[keys] PASSED [ 0%] 228s testsuite/MDAnalysisTests/analysis/test_base.py::Test_Results::test_wrong_init_type[pop] PASSED [ 0%] 228s testsuite/MDAnalysisTests/analysis/test_base.py::Test_Results::test_wrong_init_type[popitem] PASSED [ 0%] 228s testsuite/MDAnalysisTests/analysis/test_base.py::Test_Results::test_wrong_init_type[setdefault] PASSED [ 0%] 228s testsuite/MDAnalysisTests/analysis/test_base.py::Test_Results::test_wrong_init_type[update] PASSED [ 0%] 228s testsuite/MDAnalysisTests/analysis/test_base.py::Test_Results::test_wrong_init_type[values] PASSED [ 0%] 228s testsuite/MDAnalysisTests/analysis/test_base.py::Test_Results::test_wrong_init_type[data] PASSED [ 0%] 228s testsuite/MDAnalysisTests/analysis/test_base.py::Test_Results::test_weird_key[0123] PASSED [ 0%] 228s testsuite/MDAnalysisTests/analysis/test_base.py::Test_Results::test_weird_key[0j] PASSED [ 0%] 228s testsuite/MDAnalysisTests/analysis/test_base.py::Test_Results::test_weird_key[1.1] PASSED [ 0%] 228s testsuite/MDAnalysisTests/analysis/test_base.py::Test_Results::test_weird_key[{}] PASSED [ 0%] 228s testsuite/MDAnalysisTests/analysis/test_base.py::Test_Results::test_weird_key[a b] PASSED [ 0%] 228s testsuite/MDAnalysisTests/analysis/test_base.py::Test_Results::test_setattr_modify_item PASSED [ 0%] 228s testsuite/MDAnalysisTests/analysis/test_base.py::Test_Results::test_setitem_modify_item PASSED [ 0%] 228s testsuite/MDAnalysisTests/analysis/test_base.py::Test_Results::test_delattr PASSED [ 0%] 228s testsuite/MDAnalysisTests/analysis/test_base.py::Test_Results::test_missing_delattr PASSED [ 0%] 228s testsuite/MDAnalysisTests/analysis/test_base.py::Test_Results::test_pop PASSED [ 0%] 228s testsuite/MDAnalysisTests/analysis/test_base.py::Test_Results::test_update PASSED [ 0%] 228s testsuite/MDAnalysisTests/analysis/test_base.py::Test_Results::test_update_data_fail PASSED [ 0%] 228s testsuite/MDAnalysisTests/analysis/test_base.py::Test_Results::test_pickle PASSED [ 0%] 228s testsuite/MDAnalysisTests/analysis/test_base.py::Test_Results::test_initialize_arguments[args0-kwargs0-1] PASSED [ 0%] 228s testsuite/MDAnalysisTests/analysis/test_base.py::Test_Results::test_initialize_arguments[args1-kwargs1-1] PASSED [ 0%] 228s testsuite/MDAnalysisTests/analysis/test_base.py::Test_Results::test_initialize_arguments[args2-kwargs2-2] PASSED [ 0%] 228s testsuite/MDAnalysisTests/analysis/test_base.py::Test_Results::test_initialize_arguments[args3-kwargs3-1] PASSED [ 0%] 228s testsuite/MDAnalysisTests/analysis/test_base.py::Test_Results::test_different_instances PASSED [ 0%] 229s testsuite/MDAnalysisTests/analysis/test_base.py::test_frame_slice[run_kwargs0-frames0] PASSED [ 1%] 229s testsuite/MDAnalysisTests/analysis/test_base.py::test_frame_slice[run_kwargs1-frames1] PASSED [ 1%] 229s testsuite/MDAnalysisTests/analysis/test_base.py::test_frame_slice[run_kwargs2-frames2] PASSED [ 1%] 230s testsuite/MDAnalysisTests/analysis/test_base.py::test_frame_slice[run_kwargs3-frames3] PASSED [ 1%] 230s testsuite/MDAnalysisTests/analysis/test_base.py::test_frame_slice[run_kwargs4-frames4] PASSED [ 1%] 230s testsuite/MDAnalysisTests/analysis/test_base.py::test_frame_fail[run_kwargs0] PASSED [ 1%] 230s testsuite/MDAnalysisTests/analysis/test_base.py::test_frame_fail[run_kwargs1] PASSED [ 1%] 230s testsuite/MDAnalysisTests/analysis/test_base.py::test_frame_fail[run_kwargs2] PASSED [ 1%] 230s testsuite/MDAnalysisTests/analysis/test_base.py::test_frame_fail[run_kwargs3] PASSED [ 1%] 230s testsuite/MDAnalysisTests/analysis/test_base.py::test_frame_fail[run_kwargs4] PASSED [ 1%] 230s testsuite/MDAnalysisTests/analysis/test_base.py::test_frame_fail[run_kwargs5] PASSED [ 1%] 230s testsuite/MDAnalysisTests/analysis/test_base.py::test_frame_fail[run_kwargs6] PASSED [ 1%] 231s testsuite/MDAnalysisTests/analysis/test_base.py::test_frame_bool_fail PASSED [ 1%] 231s testsuite/MDAnalysisTests/analysis/test_base.py::test_rewind PASSED [ 1%] 231s testsuite/MDAnalysisTests/analysis/test_base.py::test_frames_times PASSED [ 1%] 231s testsuite/MDAnalysisTests/analysis/test_base.py::test_verbose PASSED [ 1%] 231s testsuite/MDAnalysisTests/analysis/test_base.py::test_verbose_progressbar PASSED [ 1%] 231s testsuite/MDAnalysisTests/analysis/test_base.py::test_verbose_progressbar_run PASSED [ 1%] 231s testsuite/MDAnalysisTests/analysis/test_base.py::test_verbose_progressbar_run_with_kwargs PASSED [ 1%] 231s testsuite/MDAnalysisTests/analysis/test_base.py::test_incomplete_defined_analysis PASSED [ 1%] 231s testsuite/MDAnalysisTests/analysis/test_base.py::test_old_api PASSED [ 1%] 231s testsuite/MDAnalysisTests/analysis/test_base.py::test_filter_baseanalysis_kwargs_VE PASSED [ 1%] 231s testsuite/MDAnalysisTests/analysis/test_base.py::test_filter_baseanalysis_kwargs PASSED [ 1%] 231s testsuite/MDAnalysisTests/analysis/test_base.py::test_results_type PASSED [ 1%] 231s testsuite/MDAnalysisTests/analysis/test_base.py::test_AnalysisFromFunction[None-None-2-49] PASSED [ 1%] 231s testsuite/MDAnalysisTests/analysis/test_base.py::test_AnalysisFromFunction[None-50-2-25] PASSED [ 1%] 231s testsuite/MDAnalysisTests/analysis/test_base.py::test_AnalysisFromFunction[20-50-2-15] PASSED [ 1%] 231s testsuite/MDAnalysisTests/analysis/test_base.py::test_AnalysisFromFunction[20-50-None-30] PASSED [ 1%] 232s testsuite/MDAnalysisTests/analysis/test_base.py::test_AnalysisFromFunction_args_content PASSED [ 1%] 232s testsuite/MDAnalysisTests/analysis/test_base.py::test_analysis_class PASSED [ 1%] 232s testsuite/MDAnalysisTests/analysis/test_base.py::test_analysis_class_decorator PASSED [ 1%] 232s testsuite/MDAnalysisTests/analysis/test_bat.py::TestBAT::test_bat_root_selection PASSED [ 1%] 232s testsuite/MDAnalysisTests/analysis/test_bat.py::TestBAT::test_bat_number_of_frames PASSED [ 1%] 232s testsuite/MDAnalysisTests/analysis/test_bat.py::TestBAT::test_bat_coordinates PASSED [ 1%] 232s testsuite/MDAnalysisTests/analysis/test_bat.py::TestBAT::test_bat_coordinates_single_frame PASSED [ 1%] 232s testsuite/MDAnalysisTests/analysis/test_bat.py::TestBAT::test_bat_reconstruction PASSED [ 1%] 232s testsuite/MDAnalysisTests/analysis/test_bat.py::TestBAT::test_bat_IO PASSED [ 1%] 232s testsuite/MDAnalysisTests/analysis/test_bat.py::TestBAT::test_bat_nobonds PASSED [ 1%] 232s testsuite/MDAnalysisTests/analysis/test_bat.py::TestBAT::test_bat_bad_initial_atom PASSED [ 1%] 232s testsuite/MDAnalysisTests/analysis/test_bat.py::TestBAT::test_bat_disconnected_atom_group PASSED [ 1%] 233s testsuite/MDAnalysisTests/analysis/test_bat.py::TestBAT::test_bat_multifragments_atomgroup PASSED [ 1%] 234s testsuite/MDAnalysisTests/analysis/test_bat.py::TestBAT::test_bat_incorrect_dims PASSED [ 1%] 234s testsuite/MDAnalysisTests/analysis/test_bat.py::TestBAT::test_Cartesian_does_not_modify_input PASSED [ 1%] 234s testsuite/MDAnalysisTests/analysis/test_contacts.py::test_soft_cut_q PASSED [ 1%] 234s testsuite/MDAnalysisTests/analysis/test_contacts.py::test_soft_cut_q_folded PASSED [ 1%] 234s testsuite/MDAnalysisTests/analysis/test_contacts.py::test_soft_cut_q_unfolded PASSED [ 1%] 234s testsuite/MDAnalysisTests/analysis/test_contacts.py::test_hard_cut_q[r0-2-1] PASSED [ 1%] 234s testsuite/MDAnalysisTests/analysis/test_contacts.py::test_hard_cut_q[r1-1-0] PASSED [ 1%] 234s testsuite/MDAnalysisTests/analysis/test_contacts.py::test_hard_cut_q[r2-1-0.5] PASSED [ 1%] 234s testsuite/MDAnalysisTests/analysis/test_contacts.py::test_hard_cut_q[r3-cutoff3-1] PASSED [ 1%] 234s testsuite/MDAnalysisTests/analysis/test_contacts.py::test_hard_cut_q[r4-cutoff4-0] PASSED [ 1%] 234s testsuite/MDAnalysisTests/analysis/test_contacts.py::test_radius_cut_q[r0-None-2-1] PASSED [ 1%] 234s testsuite/MDAnalysisTests/analysis/test_contacts.py::test_radius_cut_q[r1-None-1-0] PASSED [ 1%] 234s testsuite/MDAnalysisTests/analysis/test_contacts.py::test_radius_cut_q[r2-None-1-0.5] PASSED [ 1%] 234s testsuite/MDAnalysisTests/analysis/test_contacts.py::test_contact_matrix PASSED [ 1%] 234s testsuite/MDAnalysisTests/analysis/test_contacts.py::test_new_selection PASSED [ 1%] 234s testsuite/MDAnalysisTests/analysis/test_contacts.py::TestContacts::test_select_valid_types[(resname ASP GLU) and (name OE* OD*)] PASSED [ 1%] 234s testsuite/MDAnalysisTests/analysis/test_contacts.py::TestContacts::test_select_valid_types[(resname ARG LYS) and (name NH* NZ)] PASSED [ 1%] 234s testsuite/MDAnalysisTests/analysis/test_contacts.py::TestContacts::test_contacts_selections PASSED [ 1%] 234s testsuite/MDAnalysisTests/analysis/test_contacts.py::TestContacts::test_select_wrong_types[1] PASSED [ 1%] 234s testsuite/MDAnalysisTests/analysis/test_contacts.py::TestContacts::test_select_wrong_types[ag1] PASSED [ 1%] 234s testsuite/MDAnalysisTests/analysis/test_contacts.py::TestContacts::test_select_wrong_types[Universe] PASSED [ 1%] 235s testsuite/MDAnalysisTests/analysis/test_contacts.py::TestContacts::test_select_wrong_types[USE UPDATING AG] PASSED [ 1%] 235s testsuite/MDAnalysisTests/analysis/test_contacts.py::TestContacts::test_startframe PASSED [ 1%] 235s testsuite/MDAnalysisTests/analysis/test_contacts.py::TestContacts::test_end_zero PASSED [ 1%] 235s testsuite/MDAnalysisTests/analysis/test_contacts.py::TestContacts::test_slicing PASSED [ 1%] 235s testsuite/MDAnalysisTests/analysis/test_contacts.py::TestContacts::test_villin_folded PASSED [ 1%] 236s testsuite/MDAnalysisTests/analysis/test_contacts.py::TestContacts::test_villin_unfolded PASSED [ 1%] 236s testsuite/MDAnalysisTests/analysis/test_contacts.py::TestContacts::test_hard_cut_method PASSED [ 1%] 236s testsuite/MDAnalysisTests/analysis/test_contacts.py::TestContacts::test_radius_cut_method PASSED [ 1%] 236s testsuite/MDAnalysisTests/analysis/test_contacts.py::TestContacts::test_own_method PASSED [ 1%] 236s testsuite/MDAnalysisTests/analysis/test_contacts.py::TestContacts::test_own_method_no_array_cast PASSED [ 1%] 236s testsuite/MDAnalysisTests/analysis/test_contacts.py::TestContacts::test_non_callable_method PASSED [ 1%] 236s testsuite/MDAnalysisTests/analysis/test_contacts.py::TestContacts::test_distance_box[True-expected0] PASSED [ 1%] 237s testsuite/MDAnalysisTests/analysis/test_contacts.py::TestContacts::test_distance_box[False-expected1] PASSED [ 1%] 237s testsuite/MDAnalysisTests/analysis/test_contacts.py::TestContacts::test_warn_deprecated_attr PASSED [ 1%] 237s testsuite/MDAnalysisTests/analysis/test_contacts.py::test_q1q2 PASSED [ 1%] 237s testsuite/MDAnalysisTests/analysis/test_data.py::test_all_exports PASSED [ 1%] 237s testsuite/MDAnalysisTests/analysis/test_density.py::TestDensity::test_shape PASSED [ 1%] 237s testsuite/MDAnalysisTests/analysis/test_density.py::TestDensity::test_edges PASSED [ 1%] 237s testsuite/MDAnalysisTests/analysis/test_density.py::TestDensity::test_midpoints PASSED [ 1%] 237s testsuite/MDAnalysisTests/analysis/test_density.py::TestDensity::test_delta PASSED [ 1%] 237s testsuite/MDAnalysisTests/analysis/test_density.py::TestDensity::test_grid PASSED [ 1%] 237s testsuite/MDAnalysisTests/analysis/test_density.py::TestDensity::test_origin PASSED [ 1%] 237s testsuite/MDAnalysisTests/analysis/test_density.py::TestDensity::test_check_set_unit_keyerror PASSED [ 1%] 237s testsuite/MDAnalysisTests/analysis/test_density.py::TestDensity::test_check_set_unit_attributeError PASSED [ 1%] 237s testsuite/MDAnalysisTests/analysis/test_density.py::TestDensity::test_check_set_unit_nolength PASSED [ 1%] 237s testsuite/MDAnalysisTests/analysis/test_density.py::TestDensity::test_check_set_density_none PASSED [ 1%] 237s testsuite/MDAnalysisTests/analysis/test_density.py::TestDensity::test_check_set_density_not_in_units PASSED [ 1%] 237s testsuite/MDAnalysisTests/analysis/test_density.py::TestDensity::test_parameters_isdensity PASSED [ 1%] 237s testsuite/MDAnalysisTests/analysis/test_density.py::TestDensity::test_check_convert_density_grid_not_density PASSED [ 1%] 237s testsuite/MDAnalysisTests/analysis/test_density.py::TestDensity::test_check_convert_density_value_error PASSED [ 1%] 237s testsuite/MDAnalysisTests/analysis/test_density.py::TestDensity::test_check_convert_density_units_same_density_units PASSED [ 1%] 237s testsuite/MDAnalysisTests/analysis/test_density.py::TestDensity::test_check_convert_density_units_density PASSED [ 1%] 237s testsuite/MDAnalysisTests/analysis/test_density.py::TestDensity::test_convert_length_same_length_units PASSED [ 1%] 237s testsuite/MDAnalysisTests/analysis/test_density.py::TestDensity::test_convert_length_other_length_units PASSED [ 1%] 237s testsuite/MDAnalysisTests/analysis/test_density.py::TestDensity::test_repr PASSED [ 1%] 237s testsuite/MDAnalysisTests/analysis/test_density.py::TestDensity::test_check_convert_length_edges PASSED [ 1%] 237s testsuite/MDAnalysisTests/analysis/test_density.py::TestDensity::test_check_convert_density_edges PASSED [ 1%] 237s testsuite/MDAnalysisTests/analysis/test_density.py::TestDensity::test_export_types[float] PASSED [ 1%] 237s testsuite/MDAnalysisTests/analysis/test_density.py::TestDensity::test_export_types[double] PASSED [ 1%] 237s testsuite/MDAnalysisTests/analysis/test_density.py::TestDensity::test_export_types[int] PASSED [ 1%] 237s testsuite/MDAnalysisTests/analysis/test_density.py::TestDensity::test_export_types[byte] PASSED [ 1%] 237s testsuite/MDAnalysisTests/analysis/test_density.py::TestDensityAnalysis::test_run[static] PASSED [ 1%] 238s testsuite/MDAnalysisTests/analysis/test_density.py::TestDensityAnalysis::test_run[dynamic] PASSED [ 1%] 238s testsuite/MDAnalysisTests/analysis/test_density.py::TestDensityAnalysis::test_sliced PASSED [ 1%] 239s testsuite/MDAnalysisTests/analysis/test_density.py::TestDensityAnalysis::test_userdefn_eqbox PASSED [ 1%] 239s testsuite/MDAnalysisTests/analysis/test_density.py::TestDensityAnalysis::test_userdefn_neqbox PASSED [ 1%] 240s testsuite/MDAnalysisTests/analysis/test_density.py::TestDensityAnalysis::test_userdefn_boxshape PASSED [ 1%] 240s testsuite/MDAnalysisTests/analysis/test_density.py::TestDensityAnalysis::test_warn_userdefn_padding PASSED [ 1%] 240s testsuite/MDAnalysisTests/analysis/test_density.py::TestDensityAnalysis::test_warn_userdefn_smallgrid PASSED [ 1%] 241s testsuite/MDAnalysisTests/analysis/test_density.py::TestDensityAnalysis::test_ValueError_userdefn_gridcenter_shape PASSED [ 1%] 241s testsuite/MDAnalysisTests/analysis/test_density.py::TestDensityAnalysis::test_ValueError_userdefn_gridcenter_type PASSED [ 1%] 241s 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testsuite/MDAnalysisTests/analysis/test_dielectric.py::TestDielectric::test_broken_molecules PASSED [ 1%] 243s testsuite/MDAnalysisTests/analysis/test_dielectric.py::TestDielectric::test_broken_repaired_molecules PASSED [ 1%] 243s testsuite/MDAnalysisTests/analysis/test_dielectric.py::TestDielectric::test_temperature PASSED [ 1%] 243s testsuite/MDAnalysisTests/analysis/test_dielectric.py::TestDielectric::test_non_charges PASSED [ 1%] 243s testsuite/MDAnalysisTests/analysis/test_dielectric.py::TestDielectric::test_non_neutral PASSED [ 1%] 243s testsuite/MDAnalysisTests/analysis/test_dielectric.py::TestDielectric::test_free_charges PASSED [ 1%] 244s testsuite/MDAnalysisTests/analysis/test_diffusionmap.py::test_eg PASSED [ 1%] 244s testsuite/MDAnalysisTests/analysis/test_diffusionmap.py::test_dist_weights PASSED [ 1%] 245s testsuite/MDAnalysisTests/analysis/test_diffusionmap.py::test_distvalues_ag_universe PASSED [ 1%] 245s 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PASSED [ 2%] 288s testsuite/MDAnalysisTests/analysis/test_encore.py::TestEncoreClustering::test_clustering_two_different_methods PASSED [ 2%] 289s testsuite/MDAnalysisTests/analysis/test_encore.py::TestEncoreClustering::test_clustering_method_w_no_distance_matrix PASSED [ 2%] 289s testsuite/MDAnalysisTests/analysis/test_encore.py::TestEncoreClustering::test_clustering_two_methods_one_w_no_distance_matrix PASSED [ 2%] 290s testsuite/MDAnalysisTests/analysis/test_encore.py::TestEncoreClustering::test_sklearn_affinity_propagation PASSED [ 2%] 290s testsuite/MDAnalysisTests/analysis/test_encore.py::TestEncoreClustering::test_ClusterCollection_init PASSED [ 2%] 290s testsuite/MDAnalysisTests/analysis/test_encore.py::TestEncoreClustering::test_Cluster_init PASSED [ 2%] 290s testsuite/MDAnalysisTests/analysis/test_encore.py::TestEncoreClustering::test_ClusterCollection_get_ids PASSED [ 2%] 290s 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testsuite/MDAnalysisTests/analysis/test_encore.py::TestEncoreClusteringSklearn::test_one PASSED [ 2%] 290s testsuite/MDAnalysisTests/analysis/test_encore.py::TestEncoreDimensionalityReduction::test_dimensionality_reduction_one_ensemble PASSED [ 2%] 291s testsuite/MDAnalysisTests/analysis/test_encore.py::TestEncoreDimensionalityReduction::test_dimensionality_reduction_two_ensembles PASSED [ 2%] 291s testsuite/MDAnalysisTests/analysis/test_encore.py::TestEncoreDimensionalityReduction::test_dimensionality_reduction_three_ensembles_two_identical PASSED [ 2%] 292s testsuite/MDAnalysisTests/analysis/test_encore.py::TestEncoreDimensionalityReduction::test_dimensionality_reduction_specified_dimension PASSED [ 2%] 292s testsuite/MDAnalysisTests/analysis/test_encore.py::TestEncoreDimensionalityReduction::test_dimensionality_reduction_SPENative_direct PASSED [ 2%] 292s testsuite/MDAnalysisTests/analysis/test_encore.py::TestEncoreDimensionalityReduction::test_dimensionality_reduction_PCA_direct 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testsuite/MDAnalysisTests/analysis/test_gnm.py::test_gnm_SVD_fail PASSED [ 2%] 298s testsuite/MDAnalysisTests/analysis/test_gnm.py::test_closeContactGNMAnalysis PASSED [ 2%] 301s testsuite/MDAnalysisTests/analysis/test_gnm.py::test_closeContactGNMAnalysis_weights_None PASSED [ 2%] 301s testsuite/MDAnalysisTests/analysis/test_helix_analysis.py::test_local_screw_angles_plane_circle PASSED [ 2%] 301s testsuite/MDAnalysisTests/analysis/test_helix_analysis.py::test_local_screw_angles_ortho_circle PASSED [ 2%] 301s testsuite/MDAnalysisTests/analysis/test_helix_analysis.py::test_local_screw_angles_around_circle PASSED [ 2%] 301s testsuite/MDAnalysisTests/analysis/test_helix_analysis.py::test_local_screw_angles_around_circle_rising PASSED [ 2%] 301s testsuite/MDAnalysisTests/analysis/test_helix_analysis.py::test_local_screw_angles_parallel_axes PASSED [ 2%] 301s testsuite/MDAnalysisTests/analysis/test_helix_analysis.py::test_helix_analysis_zigzag[ref_axis0-screw_angles0] PASSED [ 2%] 301s 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testsuite/MDAnalysisTests/analysis/test_helix_analysis.py::test_helix_analysis_square_oct PASSED [ 2%] 302s testsuite/MDAnalysisTests/analysis/test_helix_analysis.py::TestHELANAL::test_regression_summary PASSED [ 2%] 302s testsuite/MDAnalysisTests/analysis/test_helix_analysis.py::TestHELANAL::test_regression_values PASSED [ 2%] 302s testsuite/MDAnalysisTests/analysis/test_helix_analysis.py::TestHELANAL::test_multiple_selections PASSED [ 2%] 302s testsuite/MDAnalysisTests/analysis/test_helix_analysis.py::TestHELANAL::test_universe_from_origins PASSED [ 2%] 302s testsuite/MDAnalysisTests/analysis/test_helix_analysis.py::TestHELANAL::test_universe_from_origins_except PASSED [ 2%] 302s testsuite/MDAnalysisTests/analysis/test_helix_analysis.py::TestHELANAL::test_multiple_atoms_per_residues PASSED [ 2%] 302s testsuite/MDAnalysisTests/analysis/test_helix_analysis.py::TestHELANAL::test_residue_gaps_split PASSED [ 2%] 302s testsuite/MDAnalysisTests/analysis/test_helix_analysis.py::TestHELANAL::test_residue_gaps_no_split PASSED [ 2%] 302s testsuite/MDAnalysisTests/analysis/test_helix_analysis.py::TestHELANAL::test_len_groups_short PASSED [ 2%] 302s testsuite/MDAnalysisTests/analysis/test_helix_analysis.py::TestHELANAL::test_helanal_zigzag[ref_axis0-screw_angles0] PASSED [ 2%] 302s testsuite/MDAnalysisTests/analysis/test_helix_analysis.py::TestHELANAL::test_helanal_zigzag[ref_axis1-screw_angles1] PASSED [ 2%] 302s testsuite/MDAnalysisTests/analysis/test_helix_analysis.py::TestHELANAL::test_helanal_zigzag[ref_axis2-screw_angles2] PASSED [ 2%] 302s testsuite/MDAnalysisTests/analysis/test_helix_analysis.py::TestHELANAL::test_helanal_zigzag[ref_axis3-screw_angles3] PASSED [ 2%] 302s testsuite/MDAnalysisTests/analysis/test_helix_analysis.py::TestHELANAL::test_helanal_zigzag[ref_axis4-screw_angles4] PASSED [ 2%] 302s testsuite/MDAnalysisTests/analysis/test_helix_analysis.py::TestHELANAL::test_helanal_zigzag[ref_axis5-screw_angles5] PASSED [ 2%] 302s testsuite/MDAnalysisTests/analysis/test_helix_analysis.py::TestHELANAL::test_helanal_zigzag[ref_axis6-screw_angles6] PASSED [ 2%] 302s testsuite/MDAnalysisTests/analysis/test_helix_analysis.py::TestHELANAL::test_helanal_zigzag[ref_axis7-screw_angles7] PASSED [ 2%] 302s testsuite/MDAnalysisTests/analysis/test_helix_analysis.py::TestHELANAL::test_helanal_zigzag[ref_axis8-screw_angles8] PASSED [ 2%] 302s testsuite/MDAnalysisTests/analysis/test_helix_analysis.py::TestHELANAL::test_helanal_zigzag[ref_axis9-screw_angles9] PASSED [ 2%] 302s testsuite/MDAnalysisTests/analysis/test_helix_analysis.py::TestHELANAL::test_helanal_zigzag[ref_axis10-screw_angles10] PASSED [ 2%] 302s testsuite/MDAnalysisTests/analysis/test_helix_analysis.py::TestHELANAL::test_helanal_zigzag[ref_axis11-screw_angles11] PASSED [ 2%] 302s testsuite/MDAnalysisTests/analysis/test_helix_analysis.py::TestHELANAL::test_helanal_zigzag[ref_axis12-screw_angles12] PASSED [ 2%] 302s testsuite/MDAnalysisTests/analysis/test_helix_analysis.py::TestHELANAL::test_helanal_zigzag[ref_axis13-screw_angles13] PASSED [ 2%] 302s testsuite/MDAnalysisTests/analysis/test_helix_analysis.py::TestHELANAL::test_helanal_zigzag[ref_axis14-screw_angles14] PASSED [ 2%] 302s testsuite/MDAnalysisTests/analysis/test_helix_analysis.py::test_vector_of_best_fit PASSED [ 2%] 302s testsuite/MDAnalysisTests/analysis/test_hole2.py::TestCheckAndFixLongFilename::test_short PASSED [ 2%] 302s testsuite/MDAnalysisTests/analysis/test_hole2.py::TestCheckAndFixLongFilename::test_relative PASSED [ 2%] 302s testsuite/MDAnalysisTests/analysis/test_hole2.py::TestCheckAndFixLongFilename::test_symlink_dir PASSED [ 2%] 302s testsuite/MDAnalysisTests/analysis/test_hole2.py::TestCheckAndFixLongFilename::test_symlink_file PASSED [ 2%] 302s testsuite/MDAnalysisTests/analysis/test_hole2.py::TestHole::test_correct_input SKIPPED [ 2%] 302s testsuite/MDAnalysisTests/analysis/test_hole2.py::TestHole::test_input_options SKIPPED [ 2%] 302s testsuite/MDAnalysisTests/analysis/test_hole2.py::TestHole::test_correct_profile_values SKIPPED [ 2%] 302s testsuite/MDAnalysisTests/analysis/test_hole2.py::TestHole::test_application_error SKIPPED [ 2%] 302s testsuite/MDAnalysisTests/analysis/test_hole2.py::TestHole::test_output_level SKIPPED [ 2%] 302s testsuite/MDAnalysisTests/analysis/test_hole2.py::TestHole::test_keep_files SKIPPED [ 2%] 302s testsuite/MDAnalysisTests/analysis/test_hole2.py::TestOSError::test_hole_method_oserror SKIPPED [ 2%] 302s testsuite/MDAnalysisTests/analysis/test_hole2.py::TestOSError::test_hole_oserror SKIPPED [ 2%] 302s testsuite/MDAnalysisTests/analysis/test_hole2.py::TestOSError::test_sos_triangle_oserror SKIPPED [ 2%] 302s testsuite/MDAnalysisTests/analysis/test_hole2.py::TestOSError::test_sph_process_oserror SKIPPED [ 2%] 302s testsuite/MDAnalysisTests/analysis/test_hole2.py::TestHoleAnalysis::test_deprecated_warning[sphpdbs] SKIPPED [ 2%] 302s testsuite/MDAnalysisTests/analysis/test_hole2.py::TestHoleAnalysis::test_deprecated_warning[outfiles] SKIPPED [ 2%] 302s testsuite/MDAnalysisTests/analysis/test_hole2.py::TestHoleAnalysis::test_deprecated_warning[profiles] SKIPPED [ 2%] 302s testsuite/MDAnalysisTests/analysis/test_hole2.py::TestHoleAnalysis::test_correct_profile_values SKIPPED [ 2%] 302s testsuite/MDAnalysisTests/analysis/test_hole2.py::TestHoleAnalysis::test_min_radius SKIPPED [ 2%] 302s testsuite/MDAnalysisTests/analysis/test_hole2.py::TestHoleAnalysis::test_context_manager SKIPPED [ 2%] 302s testsuite/MDAnalysisTests/analysis/test_hole2.py::TestHoleAnalysis::test_nonzero_start_surface[1-9-2] SKIPPED [ 2%] 302s testsuite/MDAnalysisTests/analysis/test_hole2.py::TestHoleAnalysis::test_nonzero_start_surface[1-None-3] SKIPPED [ 2%] 302s testsuite/MDAnalysisTests/analysis/test_hole2.py::TestHoleAnalysis::test_nonzero_start_surface[5--2-None] SKIPPED [ 2%] 302s testsuite/MDAnalysisTests/analysis/test_hole2.py::TestHoleAnalysis::test_output_level SKIPPED [ 2%] 302s testsuite/MDAnalysisTests/analysis/test_hole2.py::TestHoleAnalysis::test_cpoint_geometry SKIPPED [ 2%] 302s testsuite/MDAnalysisTests/analysis/test_hole2.py::TestHoleAnalysis::test_plot SKIPPED [ 2%] 302s testsuite/MDAnalysisTests/analysis/test_hole2.py::TestHoleAnalysis::test_plot_mean_profile SKIPPED [ 2%] 302s testsuite/MDAnalysisTests/analysis/test_hole2.py::TestHoleAnalysis::test_plot3D SKIPPED [ 2%] 302s testsuite/MDAnalysisTests/analysis/test_hole2.py::TestHoleAnalysis::test_plot3D_rmax SKIPPED [ 2%] 302s testsuite/MDAnalysisTests/analysis/test_hole2.py::TestHoleAnalysis::test_none_filename SKIPPED [ 2%] 302s testsuite/MDAnalysisTests/analysis/test_hole2.py::TestHoleAnalysisLong::test_deprecated_warning[sphpdbs] SKIPPED [ 2%] 302s testsuite/MDAnalysisTests/analysis/test_hole2.py::TestHoleAnalysisLong::test_deprecated_warning[outfiles] SKIPPED [ 2%] 302s testsuite/MDAnalysisTests/analysis/test_hole2.py::TestHoleAnalysisLong::test_deprecated_warning[profiles] SKIPPED [ 2%] 302s testsuite/MDAnalysisTests/analysis/test_hole2.py::TestHoleAnalysisLong::test_gather SKIPPED [ 2%] 302s testsuite/MDAnalysisTests/analysis/test_hole2.py::TestHoleAnalysisLong::test_gather_flat SKIPPED [ 2%] 302s testsuite/MDAnalysisTests/analysis/test_hole2.py::TestHoleAnalysisLong::test_min_radius SKIPPED [ 2%] 302s testsuite/MDAnalysisTests/analysis/test_hole2.py::TestHoleAnalysisLong::test_over_order_parameters SKIPPED [ 2%] 302s testsuite/MDAnalysisTests/analysis/test_hole2.py::TestHoleAnalysisLong::test_over_order_parameters_file SKIPPED [ 2%] 302s testsuite/MDAnalysisTests/analysis/test_hole2.py::TestHoleAnalysisLong::test_over_order_parameters_missing_file SKIPPED [ 2%] 302s testsuite/MDAnalysisTests/analysis/test_hole2.py::TestHoleAnalysisLong::test_over_order_parameters_invalid_file SKIPPED [ 2%] 302s testsuite/MDAnalysisTests/analysis/test_hole2.py::TestHoleAnalysisLong::test_over_order_parameters_frames SKIPPED [ 2%] 302s testsuite/MDAnalysisTests/analysis/test_hole2.py::TestHoleAnalysisLong::test_bin_radii SKIPPED [ 2%] 302s testsuite/MDAnalysisTests/analysis/test_hole2.py::TestHoleAnalysisLong::test_bin_radii_range[1.5] SKIPPED [ 2%] 302s testsuite/MDAnalysisTests/analysis/test_hole2.py::TestHoleAnalysisLong::test_bin_radii_range[1.8] SKIPPED [ 2%] 302s testsuite/MDAnalysisTests/analysis/test_hole2.py::TestHoleAnalysisLong::test_bin_radii_range[2.0] SKIPPED [ 2%] 302s testsuite/MDAnalysisTests/analysis/test_hole2.py::TestHoleAnalysisLong::test_bin_radii_range[2.5] SKIPPED [ 2%] 302s testsuite/MDAnalysisTests/analysis/test_hole2.py::TestHoleAnalysisLong::test_bin_radii_edges SKIPPED [ 2%] 302s testsuite/MDAnalysisTests/analysis/test_hole2.py::TestHoleAnalysisLong::test_histogram_radii SKIPPED [ 2%] 302s testsuite/MDAnalysisTests/analysis/test_hole2.py::TestHoleAnalysisLong::test_plot_select_frames SKIPPED [ 2%] 302s testsuite/MDAnalysisTests/analysis/test_hole2.py::TestHoleAnalysisLong::test_plot_order_parameters[max] SKIPPED [ 2%] 302s testsuite/MDAnalysisTests/analysis/test_hole2.py::TestHoleAnalysisLong::test_plot_order_parameters[mean] SKIPPED [ 2%] 302s testsuite/MDAnalysisTests/analysis/test_hole2.py::TestHoleAnalysisLong::test_plot_order_parameters[std] SKIPPED [ 2%] 302s testsuite/MDAnalysisTests/analysis/test_hole2.py::TestHoleAnalysisLong::test_plot_order_parameters[min] SKIPPED [ 2%] 302s testsuite/MDAnalysisTests/analysis/test_hole2.py::TestHoleAnalysisLong::test_plot3D_order_parameters SKIPPED [ 2%] 302s testsuite/MDAnalysisTests/analysis/test_hole2.py::TestHoleModule::test_hole_module_fd_closure SKIPPED [ 2%] 302s testsuite/MDAnalysisTests/analysis/test_hydrogenbondautocorrel.py::TestHydrogenBondAutocorrel::test_continuous PASSED [ 2%] 302s testsuite/MDAnalysisTests/analysis/test_hydrogenbondautocorrel.py::TestHydrogenBondAutocorrel::test_continuous_excl PASSED [ 2%] 302s testsuite/MDAnalysisTests/analysis/test_hydrogenbondautocorrel.py::TestHydrogenBondAutocorrel::test_intermittent PASSED [ 2%] 303s testsuite/MDAnalysisTests/analysis/test_hydrogenbondautocorrel.py::TestHydrogenBondAutocorrel::test_intermittent_timecut PASSED [ 2%] 303s testsuite/MDAnalysisTests/analysis/test_hydrogenbondautocorrel.py::TestHydrogenBondAutocorrel::test_intermittent_excl PASSED [ 2%] 303s testsuite/MDAnalysisTests/analysis/test_hydrogenbondautocorrel.py::TestHydrogenBondAutocorrel::test_solve_continuous PASSED [ 2%] 303s testsuite/MDAnalysisTests/analysis/test_hydrogenbondautocorrel.py::TestHydrogenBondAutocorrel::test_solve_intermittent PASSED [ 2%] 303s testsuite/MDAnalysisTests/analysis/test_hydrogenbondautocorrel.py::TestHydrogenBondAutocorrel::test_wronglength_DA PASSED [ 2%] 303s testsuite/MDAnalysisTests/analysis/test_hydrogenbondautocorrel.py::TestHydrogenBondAutocorrel::test_exclusions PASSED [ 2%] 303s testsuite/MDAnalysisTests/analysis/test_hydrogenbondautocorrel.py::TestHydrogenBondAutocorrel::test_bond_type_VE PASSED [ 2%] 303s testsuite/MDAnalysisTests/analysis/test_hydrogenbondautocorrel.py::TestHydrogenBondAutocorrel::test_solve_before_run_VE PASSED [ 2%] 303s testsuite/MDAnalysisTests/analysis/test_hydrogenbondautocorrel.py::TestHydrogenBondAutocorrel::test_unslicable_traj_VE PASSED [ 2%] 303s testsuite/MDAnalysisTests/analysis/test_hydrogenbondautocorrel.py::TestHydrogenBondAutocorrel::test_repr PASSED [ 2%] 303s testsuite/MDAnalysisTests/analysis/test_hydrogenbondautocorrel.py::test_find_donors PASSED [ 2%] 303s testsuite/MDAnalysisTests/analysis/test_hydrogenbondautocorrel.py::test_donors_nobonds PASSED [ 2%] 303s testsuite/MDAnalysisTests/analysis/test_hydrogenbondautocorrel_deprecated.py::TestHydrogenBondAutocorrel::test_continuous PASSED [ 2%] 303s testsuite/MDAnalysisTests/analysis/test_hydrogenbondautocorrel_deprecated.py::TestHydrogenBondAutocorrel::test_continuous_excl PASSED [ 2%] 303s testsuite/MDAnalysisTests/analysis/test_hydrogenbondautocorrel_deprecated.py::TestHydrogenBondAutocorrel::test_intermittent PASSED [ 2%] 303s testsuite/MDAnalysisTests/analysis/test_hydrogenbondautocorrel_deprecated.py::TestHydrogenBondAutocorrel::test_intermittent_timecut PASSED [ 2%] 303s testsuite/MDAnalysisTests/analysis/test_hydrogenbondautocorrel_deprecated.py::TestHydrogenBondAutocorrel::test_intermittent_excl PASSED [ 2%] 303s testsuite/MDAnalysisTests/analysis/test_hydrogenbondautocorrel_deprecated.py::TestHydrogenBondAutocorrel::test_solve_continuous PASSED [ 2%] 303s testsuite/MDAnalysisTests/analysis/test_hydrogenbondautocorrel_deprecated.py::TestHydrogenBondAutocorrel::test_solve_intermittent PASSED [ 2%] 303s testsuite/MDAnalysisTests/analysis/test_hydrogenbondautocorrel_deprecated.py::TestHydrogenBondAutocorrel::test_wronglength_DA PASSED [ 2%] 303s testsuite/MDAnalysisTests/analysis/test_hydrogenbondautocorrel_deprecated.py::TestHydrogenBondAutocorrel::test_exclusions PASSED [ 2%] 303s testsuite/MDAnalysisTests/analysis/test_hydrogenbondautocorrel_deprecated.py::TestHydrogenBondAutocorrel::test_bond_type_VE PASSED [ 2%] 303s testsuite/MDAnalysisTests/analysis/test_hydrogenbondautocorrel_deprecated.py::TestHydrogenBondAutocorrel::test_solve_before_run_VE PASSED [ 2%] 303s testsuite/MDAnalysisTests/analysis/test_hydrogenbondautocorrel_deprecated.py::TestHydrogenBondAutocorrel::test_unslicable_traj_VE PASSED [ 2%] 303s testsuite/MDAnalysisTests/analysis/test_hydrogenbondautocorrel_deprecated.py::TestHydrogenBondAutocorrel::test_repr PASSED [ 2%] 304s testsuite/MDAnalysisTests/analysis/test_hydrogenbondautocorrel_deprecated.py::TestHydrogenBondAutocorrel::test_deprecation_warning PASSED [ 2%] 304s testsuite/MDAnalysisTests/analysis/test_hydrogenbondautocorrel_deprecated.py::test_find_donors PASSED [ 2%] 304s testsuite/MDAnalysisTests/analysis/test_hydrogenbondautocorrel_deprecated.py::test_donors_nobonds PASSED [ 2%] 304s testsuite/MDAnalysisTests/analysis/test_hydrogenbondautocorrel_deprecated.py::test_find_hydrogen_donors_deprecation_warning PASSED [ 2%] 304s testsuite/MDAnalysisTests/analysis/test_hydrogenbondautocorrel_deprecated.py::test_moved_module_warning PASSED [ 2%] 304s testsuite/MDAnalysisTests/analysis/test_hydrogenbonds_analysis.py::TestHydrogenBondAnalysisTIP3P::test_hbond_analysis PASSED [ 3%] 304s testsuite/MDAnalysisTests/analysis/test_hydrogenbonds_analysis.py::TestHydrogenBondAnalysisTIP3P::test_count_by_type PASSED [ 3%] 304s testsuite/MDAnalysisTests/analysis/test_hydrogenbonds_analysis.py::TestHydrogenBondAnalysisTIP3P::test_count_by_ids PASSED [ 3%] 304s testsuite/MDAnalysisTests/analysis/test_hydrogenbonds_analysis.py::TestHydrogenBondAnalysisTIP3P::test_hbonds_deprecated_attr PASSED [ 3%] 304s testsuite/MDAnalysisTests/analysis/test_hydrogenbonds_analysis.py::TestHydrogenBondAnalysisIdeal::test_count_by_type PASSED [ 3%] 304s testsuite/MDAnalysisTests/analysis/test_hydrogenbonds_analysis.py::TestHydrogenBondAnalysisIdeal::test_no_bond_info_exception PASSED [ 3%] 304s testsuite/MDAnalysisTests/analysis/test_hydrogenbonds_analysis.py::TestHydrogenBondAnalysisIdeal::test_no_bond_donor_sel PASSED [ 3%] 304s testsuite/MDAnalysisTests/analysis/test_hydrogenbonds_analysis.py::TestHydrogenBondAnalysisIdeal::test_first_hbond PASSED [ 3%] 304s testsuite/MDAnalysisTests/analysis/test_hydrogenbonds_analysis.py::TestHydrogenBondAnalysisIdeal::test_hydrogen_bond_lifetime PASSED [ 3%] 304s testsuite/MDAnalysisTests/analysis/test_hydrogenbonds_analysis.py::TestHydrogenBondAnalysisIdeal::test_hydrogen_bond_lifetime_intermittency PASSED [ 3%] 304s testsuite/MDAnalysisTests/analysis/test_hydrogenbonds_analysis.py::TestHydrogenBondAnalysisIdeal::test_no_attr_hbonds PASSED [ 3%] 304s testsuite/MDAnalysisTests/analysis/test_hydrogenbonds_analysis.py::TestHydrogenBondAnalysisIdeal::test_logging_step_not_1 PASSED [ 3%] 304s testsuite/MDAnalysisTests/analysis/test_hydrogenbonds_analysis.py::TestHydrogenBondAnalysisNoRes::test_count_by_type PASSED [ 3%] 304s testsuite/MDAnalysisTests/analysis/test_hydrogenbonds_analysis.py::TestHydrogenBondAnalysisNoRes::test_no_bond_info_exception PASSED [ 3%] 304s testsuite/MDAnalysisTests/analysis/test_hydrogenbonds_analysis.py::TestHydrogenBondAnalysisNoRes::test_no_bond_donor_sel PASSED [ 3%] 304s testsuite/MDAnalysisTests/analysis/test_hydrogenbonds_analysis.py::TestHydrogenBondAnalysisNoRes::test_first_hbond PASSED [ 3%] 304s testsuite/MDAnalysisTests/analysis/test_hydrogenbonds_analysis.py::TestHydrogenBondAnalysisNoRes::test_hydrogen_bond_lifetime PASSED [ 3%] 304s testsuite/MDAnalysisTests/analysis/test_hydrogenbonds_analysis.py::TestHydrogenBondAnalysisNoRes::test_hydrogen_bond_lifetime_intermittency PASSED [ 3%] 304s testsuite/MDAnalysisTests/analysis/test_hydrogenbonds_analysis.py::TestHydrogenBondAnalysisNoRes::test_no_attr_hbonds PASSED [ 3%] 304s testsuite/MDAnalysisTests/analysis/test_hydrogenbonds_analysis.py::TestHydrogenBondAnalysisNoRes::test_logging_step_not_1 PASSED [ 3%] 304s testsuite/MDAnalysisTests/analysis/test_hydrogenbonds_analysis.py::TestHydrogenBondAnalysisNoRes::test_no_hydrogen_bonds PASSED [ 3%] 304s testsuite/MDAnalysisTests/analysis/test_hydrogenbonds_analysis.py::TestHydrogenBondAnalysisBetween::test_between_all PASSED [ 3%] 304s testsuite/MDAnalysisTests/analysis/test_hydrogenbonds_analysis.py::TestHydrogenBondAnalysisBetween::test_between_PW PASSED [ 3%] 304s testsuite/MDAnalysisTests/analysis/test_hydrogenbonds_analysis.py::TestHydrogenBondAnalysisBetween::test_between_PW_PP PASSED [ 3%] 304s testsuite/MDAnalysisTests/analysis/test_hydrogenbonds_analysis.py::TestHydrogenBondAnalysisTIP3P_GuessAcceptors_GuessHydrogens_UseTopology_::test_hbond_analysis PASSED [ 3%] 304s testsuite/MDAnalysisTests/analysis/test_hydrogenbonds_analysis.py::TestHydrogenBondAnalysisTIP3P_GuessAcceptors_GuessHydrogens_UseTopology_::test_count_by_type PASSED [ 3%] 304s testsuite/MDAnalysisTests/analysis/test_hydrogenbonds_analysis.py::TestHydrogenBondAnalysisTIP3P_GuessAcceptors_GuessHydrogens_UseTopology_::test_count_by_ids PASSED [ 3%] 304s testsuite/MDAnalysisTests/analysis/test_hydrogenbonds_analysis.py::TestHydrogenBondAnalysisTIP3P_GuessAcceptors_GuessHydrogens_UseTopology_::test_hbonds_deprecated_attr PASSED [ 3%] 304s testsuite/MDAnalysisTests/analysis/test_hydrogenbonds_analysis.py::TestHydrogenBondAnalysisTIP3P_GuessAcceptors_GuessHydrogens_UseTopology_::test_no_hydrogens PASSED [ 3%] 304s testsuite/MDAnalysisTests/analysis/test_hydrogenbonds_analysis.py::TestHydrogenBondAnalysisTIP3P_GuessDonors_NoTopology::test_guess_donors PASSED [ 3%] 304s testsuite/MDAnalysisTests/analysis/test_hydrogenbonds_analysis.py::TestHydrogenBondAnalysisTIP3P_GuessHydrogens_NoTopology::test_guess_hydrogens PASSED [ 3%] 304s testsuite/MDAnalysisTests/analysis/test_hydrogenbonds_analysis.py::TestHydrogenBondAnalysisTIP3P_GuessHydrogens_NoTopology::test_guess_hydrogens_empty_selection PASSED [ 3%] 304s testsuite/MDAnalysisTests/analysis/test_hydrogenbonds_analysis.py::TestHydrogenBondAnalysisTIP3P_GuessHydrogens_NoTopology::test_guess_hydrogens_min_max_mass PASSED [ 3%] 304s testsuite/MDAnalysisTests/analysis/test_hydrogenbonds_analysis.py::TestHydrogenBondAnalysisTIP3PStartStep::test_hbond_analysis PASSED [ 3%] 304s testsuite/MDAnalysisTests/analysis/test_hydrogenbonds_analysis.py::TestHydrogenBondAnalysisTIP3PStartStep::test_count_by_type PASSED [ 3%] 304s testsuite/MDAnalysisTests/analysis/test_hydrogenbonds_analysis.py::TestHydrogenBondAnalysisEmptySelections::test_empty_sel[donors_sel] PASSED [ 3%] 304s testsuite/MDAnalysisTests/analysis/test_hydrogenbonds_analysis.py::TestHydrogenBondAnalysisEmptySelections::test_empty_sel[hydrogens_sel] PASSED [ 3%] 304s testsuite/MDAnalysisTests/analysis/test_hydrogenbonds_analysis.py::TestHydrogenBondAnalysisEmptySelections::test_empty_sel[acceptors_sel] PASSED [ 3%] 304s testsuite/MDAnalysisTests/analysis/test_hydrogenbonds_analysis.py::TestHydrogenBondAnalysisEmptySelections::test_hbond_analysis PASSED [ 3%] 304s testsuite/MDAnalysisTests/analysis/test_leaflet.py::test_optional_nx SKIPPED [ 3%] 305s testsuite/MDAnalysisTests/analysis/test_leaflet.py::TestLeafletFinder::test_leaflet_finder PASSED [ 3%] 305s testsuite/MDAnalysisTests/analysis/test_leaflet.py::TestLeafletFinder::test_string_vs_atomgroup_proper PASSED [ 3%] 305s testsuite/MDAnalysisTests/analysis/test_leaflet.py::TestLeafletFinder::test_optimize_cutoff PASSED [ 3%] 305s testsuite/MDAnalysisTests/analysis/test_leaflet.py::TestLeafletFinder::test_pbc_on_off PASSED [ 3%] 305s testsuite/MDAnalysisTests/analysis/test_leaflet.py::TestLeafletFinder::test_pbc_on_off_difference PASSED [ 3%] 305s testsuite/MDAnalysisTests/analysis/test_leaflet.py::TestLeafletFinder::test_sparse_on_off_none[True] PASSED [ 3%] 305s testsuite/MDAnalysisTests/analysis/test_leaflet.py::TestLeafletFinder::test_sparse_on_off_none[False] PASSED [ 3%] 305s testsuite/MDAnalysisTests/analysis/test_leaflet.py::TestLeafletFinder::test_sparse_on_off_none[None] PASSED [ 3%] 305s testsuite/MDAnalysisTests/analysis/test_leaflet.py::TestLeafletFinder::test_cutoff_update PASSED [ 3%] 305s testsuite/MDAnalysisTests/analysis/test_leaflet.py::TestLeafletFinder::test_cutoff_update_default PASSED [ 3%] 305s testsuite/MDAnalysisTests/analysis/test_leaflet.py::TestLeafletFinder::test_write_selection PASSED [ 3%] 305s testsuite/MDAnalysisTests/analysis/test_leaflet.py::TestLeafletFinder::test_component_index_is_not_none PASSED [ 3%] 305s testsuite/MDAnalysisTests/analysis/test_lineardensity.py::test_invalid_grouping PASSED [ 3%] 305s testsuite/MDAnalysisTests/analysis/test_lineardensity.py::test_lineardensity[atoms-expected_masses0-expected_charges0-expected_xmass0-expected_xcharge0] PASSED [ 3%] 305s testsuite/MDAnalysisTests/analysis/test_lineardensity.py::test_lineardensity[residues-expected_masses1-expected_charges1-expected_xmass1-expected_xcharge1] PASSED [ 3%] 305s testsuite/MDAnalysisTests/analysis/test_lineardensity.py::test_lineardensity[segments-expected_masses2-expected_charges2-expected_xmass2-expected_xcharge2] PASSED [ 3%] 305s testsuite/MDAnalysisTests/analysis/test_lineardensity.py::test_lineardensity[fragments-expected_masses3-expected_charges3-expected_xmass3-expected_xcharge3] PASSED [ 3%] 305s testsuite/MDAnalysisTests/analysis/test_lineardensity.py::test_updating_atomgroup PASSED [ 3%] 305s testsuite/MDAnalysisTests/analysis/test_lineardensity.py::test_old_name_deprecations PASSED [ 3%] 306s testsuite/MDAnalysisTests/analysis/test_lineardensity.py::test_parallel_analysis PASSED [ 3%] 306s testsuite/MDAnalysisTests/analysis/test_msd.py::test_notidynamics PASSED [ 3%] 306s testsuite/MDAnalysisTests/analysis/test_msd.py::TestMSDSimple::test_selection_works PASSED [ 3%] 306s testsuite/MDAnalysisTests/analysis/test_msd.py::TestMSDSimple::test_ag_accepted PASSED [ 3%] 306s testsuite/MDAnalysisTests/analysis/test_msd.py::TestMSDSimple::test_updating_ag_rejected PASSED [ 3%] 306s testsuite/MDAnalysisTests/analysis/test_msd.py::TestMSDSimple::test_msdtype_error[foo] PASSED [ 3%] 306s testsuite/MDAnalysisTests/analysis/test_msd.py::TestMSDSimple::test_msdtype_error[bar] PASSED [ 3%] 306s testsuite/MDAnalysisTests/analysis/test_msd.py::TestMSDSimple::test_msdtype_error[yx] PASSED [ 3%] 306s testsuite/MDAnalysisTests/analysis/test_msd.py::TestMSDSimple::test_msdtype_error[zyx] PASSED [ 3%] 306s testsuite/MDAnalysisTests/analysis/test_msd.py::TestMSDSimple::test_simple_step_traj_all_dims[xyz-3] PASSED [ 3%] 306s testsuite/MDAnalysisTests/analysis/test_msd.py::TestMSDSimple::test_simple_step_traj_all_dims[xy-2] PASSED [ 3%] 307s testsuite/MDAnalysisTests/analysis/test_msd.py::TestMSDSimple::test_simple_step_traj_all_dims[xz-2] PASSED [ 3%] 307s testsuite/MDAnalysisTests/analysis/test_msd.py::TestMSDSimple::test_simple_step_traj_all_dims[yz-2] PASSED [ 3%] 307s testsuite/MDAnalysisTests/analysis/test_msd.py::TestMSDSimple::test_simple_step_traj_all_dims[x-1] PASSED [ 3%] 308s testsuite/MDAnalysisTests/analysis/test_msd.py::TestMSDSimple::test_simple_step_traj_all_dims[y-1] PASSED [ 3%] 308s testsuite/MDAnalysisTests/analysis/test_msd.py::TestMSDSimple::test_simple_step_traj_all_dims[z-1] PASSED [ 3%] 308s testsuite/MDAnalysisTests/analysis/test_msd.py::TestMSDSimple::test_simple_start_stop_step_all_dims[xyz-3] PASSED [ 3%] 308s testsuite/MDAnalysisTests/analysis/test_msd.py::TestMSDSimple::test_simple_start_stop_step_all_dims[xy-2] PASSED [ 3%] 308s testsuite/MDAnalysisTests/analysis/test_msd.py::TestMSDSimple::test_simple_start_stop_step_all_dims[xz-2] PASSED [ 3%] 308s testsuite/MDAnalysisTests/analysis/test_msd.py::TestMSDSimple::test_simple_start_stop_step_all_dims[yz-2] PASSED [ 3%] 308s testsuite/MDAnalysisTests/analysis/test_msd.py::TestMSDSimple::test_simple_start_stop_step_all_dims[x-1] PASSED [ 3%] 308s testsuite/MDAnalysisTests/analysis/test_msd.py::TestMSDSimple::test_simple_start_stop_step_all_dims[y-1] PASSED [ 3%] 308s testsuite/MDAnalysisTests/analysis/test_msd.py::TestMSDSimple::test_simple_start_stop_step_all_dims[z-1] PASSED [ 3%] 308s testsuite/MDAnalysisTests/analysis/test_msd.py::TestMSDSimple::test_random_walk_u_simple PASSED [ 3%] 308s testsuite/MDAnalysisTests/analysis/test_msd.py::TestMSDFFT::test_fft_vs_simple_default SKIPPED [ 3%] 308s testsuite/MDAnalysisTests/analysis/test_msd.py::TestMSDFFT::test_fft_vs_simple_default_per_particle SKIPPED [ 3%] 308s testsuite/MDAnalysisTests/analysis/test_msd.py::TestMSDFFT::test_fft_vs_simple_all_dims[xyz] SKIPPED [ 3%] 308s testsuite/MDAnalysisTests/analysis/test_msd.py::TestMSDFFT::test_fft_vs_simple_all_dims[xy] SKIPPED [ 3%] 308s testsuite/MDAnalysisTests/analysis/test_msd.py::TestMSDFFT::test_fft_vs_simple_all_dims[xz] SKIPPED [ 3%] 308s testsuite/MDAnalysisTests/analysis/test_msd.py::TestMSDFFT::test_fft_vs_simple_all_dims[yz] SKIPPED [ 3%] 308s testsuite/MDAnalysisTests/analysis/test_msd.py::TestMSDFFT::test_fft_vs_simple_all_dims[x] SKIPPED [ 3%] 308s testsuite/MDAnalysisTests/analysis/test_msd.py::TestMSDFFT::test_fft_vs_simple_all_dims[y] SKIPPED [ 3%] 308s testsuite/MDAnalysisTests/analysis/test_msd.py::TestMSDFFT::test_fft_vs_simple_all_dims[z] SKIPPED [ 3%] 308s testsuite/MDAnalysisTests/analysis/test_msd.py::TestMSDFFT::test_fft_vs_simple_all_dims_per_particle[xyz] SKIPPED [ 3%] 308s testsuite/MDAnalysisTests/analysis/test_msd.py::TestMSDFFT::test_fft_vs_simple_all_dims_per_particle[xy] SKIPPED [ 3%] 308s testsuite/MDAnalysisTests/analysis/test_msd.py::TestMSDFFT::test_fft_vs_simple_all_dims_per_particle[xz] SKIPPED [ 3%] 308s testsuite/MDAnalysisTests/analysis/test_msd.py::TestMSDFFT::test_fft_vs_simple_all_dims_per_particle[yz] SKIPPED [ 3%] 308s testsuite/MDAnalysisTests/analysis/test_msd.py::TestMSDFFT::test_fft_vs_simple_all_dims_per_particle[x] SKIPPED [ 3%] 308s testsuite/MDAnalysisTests/analysis/test_msd.py::TestMSDFFT::test_fft_vs_simple_all_dims_per_particle[y] SKIPPED [ 3%] 308s testsuite/MDAnalysisTests/analysis/test_msd.py::TestMSDFFT::test_fft_vs_simple_all_dims_per_particle[z] SKIPPED [ 3%] 308s testsuite/MDAnalysisTests/analysis/test_msd.py::TestMSDFFT::test_fft_step_traj_all_dims[xyz-3] SKIPPED [ 3%] 308s testsuite/MDAnalysisTests/analysis/test_msd.py::TestMSDFFT::test_fft_step_traj_all_dims[xy-2] SKIPPED [ 3%] 308s testsuite/MDAnalysisTests/analysis/test_msd.py::TestMSDFFT::test_fft_step_traj_all_dims[xz-2] SKIPPED [ 3%] 308s testsuite/MDAnalysisTests/analysis/test_msd.py::TestMSDFFT::test_fft_step_traj_all_dims[yz-2] SKIPPED [ 3%] 308s testsuite/MDAnalysisTests/analysis/test_msd.py::TestMSDFFT::test_fft_step_traj_all_dims[x-1] SKIPPED [ 3%] 308s testsuite/MDAnalysisTests/analysis/test_msd.py::TestMSDFFT::test_fft_step_traj_all_dims[y-1] SKIPPED [ 3%] 308s testsuite/MDAnalysisTests/analysis/test_msd.py::TestMSDFFT::test_fft_step_traj_all_dims[z-1] SKIPPED [ 3%] 308s testsuite/MDAnalysisTests/analysis/test_msd.py::TestMSDFFT::test_fft_start_stop_step_all_dims[xyz-3] SKIPPED [ 3%] 308s testsuite/MDAnalysisTests/analysis/test_msd.py::TestMSDFFT::test_fft_start_stop_step_all_dims[xy-2] SKIPPED [ 3%] 308s testsuite/MDAnalysisTests/analysis/test_msd.py::TestMSDFFT::test_fft_start_stop_step_all_dims[xz-2] SKIPPED [ 3%] 308s testsuite/MDAnalysisTests/analysis/test_msd.py::TestMSDFFT::test_fft_start_stop_step_all_dims[yz-2] SKIPPED [ 3%] 308s testsuite/MDAnalysisTests/analysis/test_msd.py::TestMSDFFT::test_fft_start_stop_step_all_dims[x-1] SKIPPED [ 3%] 308s testsuite/MDAnalysisTests/analysis/test_msd.py::TestMSDFFT::test_fft_start_stop_step_all_dims[y-1] SKIPPED [ 3%] 308s testsuite/MDAnalysisTests/analysis/test_msd.py::TestMSDFFT::test_fft_start_stop_step_all_dims[z-1] SKIPPED [ 3%] 308s testsuite/MDAnalysisTests/analysis/test_msd.py::TestMSDFFT::test_random_walk_u_fft SKIPPED [ 3%] 308s testsuite/MDAnalysisTests/analysis/test_nucleicacids.py::test_empty_ag_error PASSED [ 3%] 308s testsuite/MDAnalysisTests/analysis/test_nucleicacids.py::test_wc_dist_shape PASSED [ 3%] 308s testsuite/MDAnalysisTests/analysis/test_nucleicacids.py::test_wc_dist_results_keys PASSED [ 3%] 308s testsuite/MDAnalysisTests/analysis/test_nucleicacids.py::test_wc_dist PASSED [ 3%] 308s testsuite/MDAnalysisTests/analysis/test_nucleicacids.py::test_wc_dist_invalid_residue_types PASSED [ 3%] 308s testsuite/MDAnalysisTests/analysis/test_nucleicacids.py::test_selection_length_mismatch PASSED [ 3%] 308s testsuite/MDAnalysisTests/analysis/test_nucleicacids.py::test_wc_dist_deprecation_warning PASSED [ 3%] 308s testsuite/MDAnalysisTests/analysis/test_nucleicacids.py::test_wc_dist_strand_verification PASSED [ 3%] 308s testsuite/MDAnalysisTests/analysis/test_nucleicacids.py::test_wc_dis_results_keyerrs[0] PASSED [ 3%] 308s testsuite/MDAnalysisTests/analysis/test_nucleicacids.py::test_wc_dis_results_keyerrs[1] PASSED [ 3%] 308s testsuite/MDAnalysisTests/analysis/test_nucleicacids.py::test_wc_dis_results_keyerrs[2] PASSED [ 3%] 308s testsuite/MDAnalysisTests/analysis/test_nucleicacids.py::test_wc_dis_results_keyerrs[parsnips] PASSED [ 3%] 308s testsuite/MDAnalysisTests/analysis/test_nucleicacids.py::test_wc_dis_results_keyerrs[time] PASSED [ 3%] 308s testsuite/MDAnalysisTests/analysis/test_nucleicacids.py::test_wc_dis_results_keyerrs[-1] PASSED [ 3%] 308s testsuite/MDAnalysisTests/analysis/test_nucleicacids.py::test_minor_dist PASSED [ 3%] 308s testsuite/MDAnalysisTests/analysis/test_nucleicacids.py::test_major_dist PASSED [ 3%] 309s testsuite/MDAnalysisTests/analysis/test_nuclinfo.py::test_wc_pair[1-2-RNAA-RNAA-4.3874702] PASSED [ 3%] 309s testsuite/MDAnalysisTests/analysis/test_nuclinfo.py::test_wc_pair[22-23-RNAA-RNAA-4.1716404] PASSED [ 3%] 309s testsuite/MDAnalysisTests/analysis/test_nuclinfo.py::test_minor_pair[3-17-RNAA-RNAA-15.06506] PASSED [ 3%] 309s testsuite/MDAnalysisTests/analysis/test_nuclinfo.py::test_minor_pair[20-5-RNAA-RNAA-3.219116] PASSED [ 3%] 309s testsuite/MDAnalysisTests/analysis/test_nuclinfo.py::test_major_pair[2-12-RNAA-RNAA-26.884272] PASSED [ 3%] 309s testsuite/MDAnalysisTests/analysis/test_nuclinfo.py::test_major_pair[5-9-RNAA-RNAA-13.578535] PASSED [ 3%] 309s testsuite/MDAnalysisTests/analysis/test_nuclinfo.py::test_phase_cp[RNAA-9-3.16497] PASSED [ 3%] 309s testsuite/MDAnalysisTests/analysis/test_nuclinfo.py::test_phase_cp[RNAA-21-22.07721] PASSED [ 3%] 309s testsuite/MDAnalysisTests/analysis/test_nuclinfo.py::test_phase_as[RNAA-1-359.5758] PASSED [ 3%] 309s testsuite/MDAnalysisTests/analysis/test_nuclinfo.py::test_phase_as[RNAA-11-171.71645] PASSED [ 3%] 309s testsuite/MDAnalysisTests/analysis/test_nuclinfo.py::test_tors[RNAA-5-expected_value0] PASSED [ 3%] 309s testsuite/MDAnalysisTests/analysis/test_nuclinfo.py::test_tors[RNAA-21-expected_value1] PASSED [ 3%] 309s testsuite/MDAnalysisTests/analysis/test_nuclinfo.py::test_tors_alpha[RNAA-6-279.15103] PASSED [ 3%] 309s testsuite/MDAnalysisTests/analysis/test_nuclinfo.py::test_tors_alpha[RNAA-18-298.09936] PASSED [ 3%] 309s testsuite/MDAnalysisTests/analysis/test_nuclinfo.py::test_tors_beta[RNAA-7-184.20501] PASSED [ 3%] 309s testsuite/MDAnalysisTests/analysis/test_nuclinfo.py::test_tors_beta[RNAA-15-169.70042] PASSED [ 3%] 309s testsuite/MDAnalysisTests/analysis/test_nuclinfo.py::test_tors_gamma[RNAA-7-52.72022] PASSED [ 3%] 309s testsuite/MDAnalysisTests/analysis/test_nuclinfo.py::test_tors_gamma[RNAA-15-54.59684] PASSED [ 3%] 309s testsuite/MDAnalysisTests/analysis/test_nuclinfo.py::test_tors_delta[RNAA-7-84.80554] PASSED [ 3%] 309s testsuite/MDAnalysisTests/analysis/test_nuclinfo.py::test_tors_delta[RNAA-15-82.00043] PASSED [ 3%] 309s testsuite/MDAnalysisTests/analysis/test_nuclinfo.py::test_tors_eps[RNAA-7-200.4099] PASSED [ 3%] 309s testsuite/MDAnalysisTests/analysis/test_nuclinfo.py::test_tors_eps[RNAA-15-210.96953] PASSED [ 3%] 309s testsuite/MDAnalysisTests/analysis/test_nuclinfo.py::test_tors_zeta[RNAA-7-297.84736] PASSED [ 3%] 309s testsuite/MDAnalysisTests/analysis/test_nuclinfo.py::test_tors_zeta[RNAA-15-330.24898] PASSED [ 3%] 309s testsuite/MDAnalysisTests/analysis/test_nuclinfo.py::test_tors_chi[RNAA-1-178.37435] PASSED [ 3%] 309s testsuite/MDAnalysisTests/analysis/test_nuclinfo.py::test_tors_chi[RNAA-2-202.03418] PASSED [ 3%] 309s testsuite/MDAnalysisTests/analysis/test_nuclinfo.py::test_tors_chi[RNAA-7-200.91674] PASSED [ 3%] 309s testsuite/MDAnalysisTests/analysis/test_nuclinfo.py::test_tors_chi[RNAA-15-209.32109] PASSED [ 3%] 309s testsuite/MDAnalysisTests/analysis/test_nuclinfo.py::test_hydroxyl[RNAA-20-103.07024] PASSED [ 3%] 309s testsuite/MDAnalysisTests/analysis/test_nuclinfo.py::test_hydroxyl[RNAA-5-156.62223] PASSED [ 3%] 309s testsuite/MDAnalysisTests/analysis/test_nuclinfo.py::test_hydroxyl[RNAA-7-77.94538] PASSED [ 3%] 309s testsuite/MDAnalysisTests/analysis/test_nuclinfo.py::test_hydroxyl[RNAA-15-130.18539] PASSED [ 3%] 309s testsuite/MDAnalysisTests/analysis/test_nuclinfo.py::test_pseudo_dihe_baseflip[16-2-3-RNAA-RNAA-RNAA-314.69804] PASSED [ 3%] 309s testsuite/MDAnalysisTests/analysis/test_nuclinfo.py::test_pseudo_dihe_baseflip[8-9-10-RNAA-RNAA-RNAA-34.50106] PASSED [ 3%] 309s testsuite/MDAnalysisTests/analysis/test_pca.py::test_cov PASSED [ 3%] 309s testsuite/MDAnalysisTests/analysis/test_pca.py::test_cum_var PASSED [ 3%] 309s testsuite/MDAnalysisTests/analysis/test_pca.py::test_pcs PASSED [ 3%] 309s testsuite/MDAnalysisTests/analysis/test_pca.py::test_pcs_n_components PASSED [ 3%] 309s testsuite/MDAnalysisTests/analysis/test_pca.py::test_different_steps PASSED [ 3%] 309s testsuite/MDAnalysisTests/analysis/test_pca.py::test_transform_different_atoms PASSED [ 3%] 309s testsuite/MDAnalysisTests/analysis/test_pca.py::test_transform_rerun PASSED [ 3%] 309s testsuite/MDAnalysisTests/analysis/test_pca.py::test_pca_not_run PASSED [ 3%] 309s testsuite/MDAnalysisTests/analysis/test_pca.py::test_no_frames PASSED [ 3%] 309s testsuite/MDAnalysisTests/analysis/test_pca.py::test_transform PASSED [ 3%] 309s testsuite/MDAnalysisTests/analysis/test_pca.py::test_transform_mismatch PASSED [ 3%] 309s testsuite/MDAnalysisTests/analysis/test_pca.py::test_transform_universe PASSED [ 3%] 309s testsuite/MDAnalysisTests/analysis/test_pca.py::test_project_no_pca_run PASSED [ 3%] 309s testsuite/MDAnalysisTests/analysis/test_pca.py::test_project_none_anchor PASSED [ 3%] 309s testsuite/MDAnalysisTests/analysis/test_pca.py::test_project_more_anchor PASSED [ 3%] 309s testsuite/MDAnalysisTests/analysis/test_pca.py::test_project_less_anchor PASSED [ 3%] 310s testsuite/MDAnalysisTests/analysis/test_pca.py::test_project_invalid_anchor PASSED [ 3%] 310s testsuite/MDAnalysisTests/analysis/test_pca.py::test_project_compare_projections PASSED [ 3%] 310s testsuite/MDAnalysisTests/analysis/test_pca.py::test_project_reconstruct_whole PASSED [ 3%] 310s testsuite/MDAnalysisTests/analysis/test_pca.py::test_project_twice_projection[0-0] PASSED [ 3%] 311s testsuite/MDAnalysisTests/analysis/test_pca.py::test_project_twice_projection[0-n21] PASSED [ 4%] 311s testsuite/MDAnalysisTests/analysis/test_pca.py::test_project_twice_projection[n12-n22] PASSED [ 4%] 311s testsuite/MDAnalysisTests/analysis/test_pca.py::test_project_twice_projection[0-1] PASSED [ 4%] 311s testsuite/MDAnalysisTests/analysis/test_pca.py::test_project_twice_projection[1-0] PASSED [ 4%] 311s testsuite/MDAnalysisTests/analysis/test_pca.py::test_project_extrapolate_translation PASSED [ 4%] 311s testsuite/MDAnalysisTests/analysis/test_pca.py::test_cosine_content PASSED [ 4%] 311s testsuite/MDAnalysisTests/analysis/test_pca.py::test_mean_shape PASSED [ 4%] 311s testsuite/MDAnalysisTests/analysis/test_pca.py::test_calculate_mean PASSED [ 4%] 311s testsuite/MDAnalysisTests/analysis/test_pca.py::test_given_mean PASSED [ 4%] 311s testsuite/MDAnalysisTests/analysis/test_pca.py::test_wrong_num_given_mean PASSED [ 4%] 311s testsuite/MDAnalysisTests/analysis/test_pca.py::test_alignment PASSED [ 4%] 311s testsuite/MDAnalysisTests/analysis/test_pca.py::test_covariance_norm PASSED [ 4%] 311s testsuite/MDAnalysisTests/analysis/test_pca.py::test_pca_rmsip_self PASSED [ 4%] 311s testsuite/MDAnalysisTests/analysis/test_pca.py::test_rmsip_ortho PASSED [ 4%] 311s testsuite/MDAnalysisTests/analysis/test_pca.py::test_pytest_too_many_components PASSED [ 4%] 311s testsuite/MDAnalysisTests/analysis/test_pca.py::test_asymmetric_rmsip PASSED [ 4%] 311s testsuite/MDAnalysisTests/analysis/test_pca.py::test_pca_cumulative_overlap_self PASSED [ 4%] 311s testsuite/MDAnalysisTests/analysis/test_pca.py::test_cumulative_overlap_ortho PASSED [ 4%] 311s testsuite/MDAnalysisTests/analysis/test_pca.py::test_compare_not_run_other[rmsip] PASSED [ 4%] 311s testsuite/MDAnalysisTests/analysis/test_pca.py::test_compare_not_run_other[cumulative_overlap] PASSED [ 4%] 311s testsuite/MDAnalysisTests/analysis/test_pca.py::test_compare_not_run_self[rmsip] PASSED [ 4%] 311s testsuite/MDAnalysisTests/analysis/test_pca.py::test_compare_not_run_self[cumulative_overlap] PASSED [ 4%] 311s testsuite/MDAnalysisTests/analysis/test_pca.py::test_compare_wrong_class[rmsip] PASSED [ 4%] 311s testsuite/MDAnalysisTests/analysis/test_pca.py::test_compare_wrong_class[cumulative_overlap] PASSED [ 4%] 311s testsuite/MDAnalysisTests/analysis/test_pca.py::test_pca_attr_warning[p_components] PASSED [ 4%] 311s testsuite/MDAnalysisTests/analysis/test_pca.py::test_pca_attr_warning[variance] PASSED [ 4%] 311s testsuite/MDAnalysisTests/analysis/test_pca.py::test_pca_attr_warning[cumulated_variance] PASSED [ 4%] 311s testsuite/MDAnalysisTests/analysis/test_persistencelength.py::TestPersistenceLength::test_ag_ValueError PASSED [ 4%] 312s testsuite/MDAnalysisTests/analysis/test_persistencelength.py::TestPersistenceLength::test_run PASSED [ 4%] 312s testsuite/MDAnalysisTests/analysis/test_persistencelength.py::TestPersistenceLength::test_lb PASSED [ 4%] 312s testsuite/MDAnalysisTests/analysis/test_persistencelength.py::TestPersistenceLength::test_fit PASSED [ 4%] 312s testsuite/MDAnalysisTests/analysis/test_persistencelength.py::TestPersistenceLength::test_raise_NoDataError PASSED [ 4%] 313s testsuite/MDAnalysisTests/analysis/test_persistencelength.py::TestPersistenceLength::test_plot_ax_return PASSED [ 4%] 313s testsuite/MDAnalysisTests/analysis/test_persistencelength.py::TestPersistenceLength::test_plot_with_ax PASSED [ 4%] 313s testsuite/MDAnalysisTests/analysis/test_persistencelength.py::TestPersistenceLength::test_current_axes PASSED [ 4%] 313s testsuite/MDAnalysisTests/analysis/test_persistencelength.py::TestPersistenceLength::test[lb] PASSED [ 4%] 314s testsuite/MDAnalysisTests/analysis/test_persistencelength.py::TestPersistenceLength::test[lp] PASSED [ 4%] 314s testsuite/MDAnalysisTests/analysis/test_persistencelength.py::TestPersistenceLength::test[fit] PASSED [ 4%] 314s testsuite/MDAnalysisTests/analysis/test_persistencelength.py::TestFitExponential::test_fit_simple PASSED [ 4%] 314s testsuite/MDAnalysisTests/analysis/test_persistencelength.py::TestFitExponential::test_fit_noisy PASSED [ 4%] 314s testsuite/MDAnalysisTests/analysis/test_persistencelength.py::TestSortBackbone::test_missing_bonds PASSED [ 4%] 314s testsuite/MDAnalysisTests/analysis/test_persistencelength.py::TestSortBackbone::test_sortbb PASSED [ 4%] 314s testsuite/MDAnalysisTests/analysis/test_persistencelength.py::TestSortBackbone::test_not_fragment PASSED [ 4%] 314s testsuite/MDAnalysisTests/analysis/test_persistencelength.py::TestSortBackbone::test_branches PASSED [ 4%] 314s testsuite/MDAnalysisTests/analysis/test_persistencelength.py::TestSortBackbone::test_circular PASSED [ 4%] 315s testsuite/MDAnalysisTests/analysis/test_psa.py::TestPSAnalysis::test_hausdorff_bound PASSED [ 4%] 316s testsuite/MDAnalysisTests/analysis/test_psa.py::TestPSAnalysis::test_explicit_metric PASSED [ 4%] 316s testsuite/MDAnalysisTests/analysis/test_psa.py::TestPSAnalysis::test_reversal_hausdorff PASSED [ 4%] 317s testsuite/MDAnalysisTests/analysis/test_psa.py::TestPSAnalysis::test_reversal_frechet PASSED [ 4%] 318s testsuite/MDAnalysisTests/analysis/test_psa.py::TestPSAnalysis::test_get_num_paths PASSED [ 4%] 318s testsuite/MDAnalysisTests/analysis/test_psa.py::TestPSAnalysis::test_get_paths PASSED [ 4%] 319s testsuite/MDAnalysisTests/analysis/test_psa.py::TestPSAnalysis::test_psa_pairs_ValueError PASSED [ 4%] 320s testsuite/MDAnalysisTests/analysis/test_psa.py::TestPSAnalysis::test_psa_pairs PASSED [ 4%] 320s testsuite/MDAnalysisTests/analysis/test_psa.py::TestPSAnalysis::test_hausdorff_pairs_ValueError PASSED [ 4%] 321s testsuite/MDAnalysisTests/analysis/test_psa.py::TestPSAnalysis::test_hausdorff_pairs PASSED [ 4%] 322s testsuite/MDAnalysisTests/analysis/test_psa.py::TestPSAnalysis::test_nearest_neighbors_ValueError PASSED [ 4%] 323s testsuite/MDAnalysisTests/analysis/test_psa.py::TestPSAnalysis::test_nearest_neighbors PASSED [ 4%] 324s testsuite/MDAnalysisTests/analysis/test_psa.py::TestPSAnalysis::test_load[True] PASSED [ 4%] 324s testsuite/MDAnalysisTests/analysis/test_psa.py::TestPSAnalysis::test_load[False] PASSED [ 4%] 325s testsuite/MDAnalysisTests/analysis/test_psa.py::TestPSAnalysis::test_load_nofile PASSED [ 4%] 325s testsuite/MDAnalysisTests/analysis/test_psa.py::TestPSAnalysis::test_save_nopaths PASSED [ 4%] 327s testsuite/MDAnalysisTests/analysis/test_psa.py::TestPSAnalysis::test_dendrogram_produced PASSED [ 4%] 329s testsuite/MDAnalysisTests/analysis/test_psa.py::TestPSAnalysis::test_dendrogram_produced_annotated PASSED [ 4%] 330s testsuite/MDAnalysisTests/analysis/test_psa.py::TestPSAnalysis::test_plot_nearest_neighbors PASSED [ 4%] 330s testsuite/MDAnalysisTests/analysis/test_psa.py::TestPSAnalysis::test_dist_mat_to_vec_i_less_j PASSED [ 4%] 330s testsuite/MDAnalysisTests/analysis/test_psa.py::TestPSAnalysis::test_dist_mat_to_vec_i_greater_j PASSED [ 4%] 330s testsuite/MDAnalysisTests/analysis/test_psa.py::TestPSAnalysis::test_dist_mat_to_vec_input_numpy_integer_32 PASSED [ 4%] 330s testsuite/MDAnalysisTests/analysis/test_psa.py::TestPSAnalysis::test_dist_mat_to_vec_input_numpy_integer_16 PASSED [ 4%] 331s testsuite/MDAnalysisTests/analysis/test_psa.py::TestPSAnalysis::test_hausdorff_pairs_distances PASSED [ 4%] 331s testsuite/MDAnalysisTests/analysis/test_psa.py::TestPSAnalysis::test_distances_from_hausdorff_pairs_frames PASSED [ 4%] 331s testsuite/MDAnalysisTests/analysis/test_psa.py::TestPSAExceptions::test_no_path_data PASSED [ 4%] 331s testsuite/MDAnalysisTests/analysis/test_psa.py::TestPSAExceptions::test_get_path_metric_func_bad_key PASSED [ 4%] 331s testsuite/MDAnalysisTests/analysis/test_psa.py::TestPSAExceptions::test_get_coord_axes_bad_dims PASSED [ 4%] 331s testsuite/MDAnalysisTests/analysis/test_psa.py::TestPSAExceptions::test_dist_mat_to_vec_func_out_of_bounds[5-6-4] PASSED [ 4%] 331s testsuite/MDAnalysisTests/analysis/test_psa.py::TestPSAExceptions::test_dist_mat_to_vec_func_out_of_bounds[5-4-6] PASSED [ 4%] 331s testsuite/MDAnalysisTests/analysis/test_psa.py::TestPSAExceptions::test_dist_mat_to_vec_func_out_of_bounds[5-6-7] PASSED [ 4%] 331s testsuite/MDAnalysisTests/analysis/test_psa.py::TestPSAExceptions::test_dist_mat_to_vec_func_out_of_bounds[5--1-2] PASSED [ 4%] 331s testsuite/MDAnalysisTests/analysis/test_psa.py::TestPSAExceptions::test_dist_mat_to_vec_func_out_of_bounds[5-1--2] PASSED [ 4%] 331s testsuite/MDAnalysisTests/analysis/test_psa.py::TestPSAExceptions::test_dist_mat_to_vec_func_out_of_bounds[1-0-0] PASSED [ 4%] 331s testsuite/MDAnalysisTests/analysis/test_psa.py::TestPSAExceptions::test_dist_mat_to_vec_func_i_equals_j[5-4-4] PASSED [ 4%] 331s testsuite/MDAnalysisTests/analysis/test_psa.py::TestPSAExceptions::test_dist_mat_to_vec_func_i_equals_j[4-6-4] PASSED [ 4%] 331s testsuite/MDAnalysisTests/analysis/test_psa.py::TestPSAExceptions::test_dist_mat_to_vec_func_bad_integers PASSED [ 4%] 331s testsuite/MDAnalysisTests/analysis/test_psa.py::TestHausdorffSymmetric::test_symmetry PASSED [ 4%] 331s testsuite/MDAnalysisTests/analysis/test_psa.py::TestHausdorffSymmetric::test_hausdorff_value PASSED [ 4%] 331s testsuite/MDAnalysisTests/analysis/test_psa.py::TestWeightedAvgHausdorffSymmetric::test_symmetry PASSED [ 4%] 331s testsuite/MDAnalysisTests/analysis/test_psa.py::TestWeightedAvgHausdorffSymmetric::test_hausdorff_value PASSED [ 4%] 331s testsuite/MDAnalysisTests/analysis/test_psa.py::TestWeightedAvgHausdorffSymmetric::test_asymmetric_weight PASSED [ 4%] 331s testsuite/MDAnalysisTests/analysis/test_psa.py::TestAvgHausdorffSymmetric::test_symmetry PASSED [ 4%] 331s testsuite/MDAnalysisTests/analysis/test_psa.py::TestAvgHausdorffSymmetric::test_hausdorff_value PASSED [ 4%] 331s testsuite/MDAnalysisTests/analysis/test_psa.py::TestAvgHausdorffSymmetric::test_asymmetric_weight PASSED [ 4%] 331s testsuite/MDAnalysisTests/analysis/test_rdf.py::test_nbins PASSED [ 4%] 331s testsuite/MDAnalysisTests/analysis/test_rdf.py::test_range PASSED [ 4%] 331s testsuite/MDAnalysisTests/analysis/test_rdf.py::test_count_sum PASSED [ 4%] 331s testsuite/MDAnalysisTests/analysis/test_rdf.py::test_count PASSED [ 4%] 331s testsuite/MDAnalysisTests/analysis/test_rdf.py::test_double_run PASSED [ 4%] 331s testsuite/MDAnalysisTests/analysis/test_rdf.py::test_exclusion PASSED [ 4%] 331s testsuite/MDAnalysisTests/analysis/test_rdf.py::test_ignore_same_residues[residue-8] PASSED [ 4%] 331s testsuite/MDAnalysisTests/analysis/test_rdf.py::test_ignore_same_residues[segment-0] PASSED [ 4%] 331s testsuite/MDAnalysisTests/analysis/test_rdf.py::test_ignore_same_residues[chain-8] PASSED [ 4%] 331s testsuite/MDAnalysisTests/analysis/test_rdf.py::test_ignore_same_residues_fails PASSED [ 4%] 331s testsuite/MDAnalysisTests/analysis/test_rdf.py::test_rdf_attr_warning[rdf] PASSED [ 4%] 331s testsuite/MDAnalysisTests/analysis/test_rdf.py::test_rdf_attr_warning[bins] PASSED [ 4%] 331s testsuite/MDAnalysisTests/analysis/test_rdf.py::test_rdf_attr_warning[edges] PASSED [ 4%] 331s testsuite/MDAnalysisTests/analysis/test_rdf.py::test_rdf_attr_warning[count] PASSED [ 4%] 331s testsuite/MDAnalysisTests/analysis/test_rdf.py::test_norm[density-1.956823] PASSED [ 4%] 331s testsuite/MDAnalysisTests/analysis/test_rdf.py::test_norm[rdf-244602.88385] PASSED [ 4%] 331s testsuite/MDAnalysisTests/analysis/test_rdf.py::test_norm[none-4] PASSED [ 4%] 331s testsuite/MDAnalysisTests/analysis/test_rdf.py::test_norm_values[Density-density] PASSED [ 4%] 331s testsuite/MDAnalysisTests/analysis/test_rdf.py::test_norm_values[None-none] PASSED [ 4%] 331s testsuite/MDAnalysisTests/analysis/test_rdf.py::test_unknown_norm PASSED [ 4%] 332s testsuite/MDAnalysisTests/analysis/test_rdf_s.py::test_nbins PASSED [ 4%] 332s testsuite/MDAnalysisTests/analysis/test_rdf_s.py::test_range PASSED [ 4%] 332s testsuite/MDAnalysisTests/analysis/test_rdf_s.py::test_count_size PASSED [ 4%] 332s testsuite/MDAnalysisTests/analysis/test_rdf_s.py::test_count PASSED [ 4%] 332s testsuite/MDAnalysisTests/analysis/test_rdf_s.py::test_double_run PASSED [ 4%] 332s testsuite/MDAnalysisTests/analysis/test_rdf_s.py::test_cdf PASSED [ 4%] 332s testsuite/MDAnalysisTests/analysis/test_rdf_s.py::test_density[None-26551.55088100731] PASSED [ 4%] 332s testsuite/MDAnalysisTests/analysis/test_rdf_s.py::test_density[False-26551.55088100731] PASSED [ 4%] 332s testsuite/MDAnalysisTests/analysis/test_rdf_s.py::test_density[True-0.021915460340071267] PASSED [ 4%] 332s testsuite/MDAnalysisTests/analysis/test_rdf_s.py::test_overwrite_norm PASSED [ 4%] 332s testsuite/MDAnalysisTests/analysis/test_rdf_s.py::test_norm[density-0.021915460340071267] PASSED [ 4%] 332s testsuite/MDAnalysisTests/analysis/test_rdf_s.py::test_norm[rdf-26551.55088100731] PASSED [ 4%] 332s testsuite/MDAnalysisTests/analysis/test_rdf_s.py::test_norm[none-0.6] PASSED [ 4%] 332s testsuite/MDAnalysisTests/analysis/test_rdf_s.py::test_norm_values[Density-density] PASSED [ 4%] 332s testsuite/MDAnalysisTests/analysis/test_rdf_s.py::test_norm_values[None-none] PASSED [ 4%] 332s testsuite/MDAnalysisTests/analysis/test_rdf_s.py::test_unknown_norm PASSED [ 4%] 332s testsuite/MDAnalysisTests/analysis/test_rdf_s.py::test_rdf_attr_warning[rdf] PASSED [ 4%] 332s testsuite/MDAnalysisTests/analysis/test_rdf_s.py::test_rdf_attr_warning[bins] PASSED [ 4%] 332s testsuite/MDAnalysisTests/analysis/test_rdf_s.py::test_rdf_attr_warning[edges] PASSED [ 4%] 332s testsuite/MDAnalysisTests/analysis/test_rdf_s.py::test_rdf_attr_warning[count] PASSED [ 4%] 332s testsuite/MDAnalysisTests/analysis/test_rdf_s.py::test_rdf_attr_warning[cdf] PASSED [ 4%] 332s testsuite/MDAnalysisTests/analysis/test_rms.py::Testrmsd::test_p_frames PASSED [ 4%] 332s testsuite/MDAnalysisTests/analysis/test_rms.py::Testrmsd::test_no_center PASSED [ 4%] 332s testsuite/MDAnalysisTests/analysis/test_rms.py::Testrmsd::test_center PASSED [ 4%] 332s testsuite/MDAnalysisTests/analysis/test_rms.py::Testrmsd::test_list PASSED [ 4%] 332s testsuite/MDAnalysisTests/analysis/test_rms.py::Testrmsd::test_superposition[float32] PASSED [ 4%] 332s testsuite/MDAnalysisTests/analysis/test_rms.py::Testrmsd::test_superposition[float64] PASSED [ 4%] 332s testsuite/MDAnalysisTests/analysis/test_rms.py::Testrmsd::test_weights PASSED [ 4%] 333s testsuite/MDAnalysisTests/analysis/test_rms.py::Testrmsd::test_weights_and_superposition_1 PASSED [ 4%] 333s testsuite/MDAnalysisTests/analysis/test_rms.py::Testrmsd::test_weights_and_superposition_2 PASSED [ 4%] 333s testsuite/MDAnalysisTests/analysis/test_rms.py::Testrmsd::test_unequal_shape PASSED [ 4%] 333s testsuite/MDAnalysisTests/analysis/test_rms.py::Testrmsd::test_wrong_weights PASSED [ 4%] 333s testsuite/MDAnalysisTests/analysis/test_rms.py::Testrmsd::test_with_superposition_smaller PASSED [ 4%] 333s testsuite/MDAnalysisTests/analysis/test_rms.py::Testrmsd::test_with_superposition_equal PASSED [ 4%] 333s testsuite/MDAnalysisTests/analysis/test_rms.py::TestRMSD::test_weights_mass_is_mass_weighted PASSED [ 4%] 333s testsuite/MDAnalysisTests/analysis/test_rms.py::TestRMSD::test_custom_groupselection_weights_applied_1D_array PASSED [ 4%] 333s testsuite/MDAnalysisTests/analysis/test_rms.py::TestRMSD::test_custom_groupselection_weights_applied_mass PASSED [ 4%] 333s testsuite/MDAnalysisTests/analysis/test_rms.py::TestRMSD::test_ref_length_unequal_len PASSED [ 4%] 333s testsuite/MDAnalysisTests/analysis/test_rms.py::TestRMSD::test_mass_mismatches PASSED [ 4%] 334s testsuite/MDAnalysisTests/analysis/test_rms.py::TestRMSD::test_group_selections_unequal_len PASSED [ 4%] 334s testsuite/MDAnalysisTests/analysis/test_rms.py::TestRMSF::test_rmsf PASSED [ 4%] 334s testsuite/MDAnalysisTests/analysis/test_rms.py::TestRMSF::test_rmsf_single_frame PASSED [ 4%] 335s testsuite/MDAnalysisTests/analysis/test_rms.py::TestRMSF::test_rmsf_identical_frames PASSED [ 4%] 335s testsuite/MDAnalysisTests/analysis/test_rms.py::TestRMSF::test_rmsf_attr_warning PASSED [ 4%] 335s testsuite/MDAnalysisTests/analysis/test_waterdynamics.py::test_WaterOrientationalRelaxation PASSED [ 4%] 335s testsuite/MDAnalysisTests/analysis/test_waterdynamics.py::test_WaterOrientationalRelaxation_zeroMolecules PASSED [ 4%] 335s testsuite/MDAnalysisTests/analysis/test_waterdynamics.py::test_AngularDistribution PASSED [ 4%] 335s testsuite/MDAnalysisTests/analysis/test_waterdynamics.py::test_MeanSquareDisplacement PASSED [ 4%] 335s testsuite/MDAnalysisTests/analysis/test_waterdynamics.py::test_MeanSquareDisplacement_zeroMolecules PASSED [ 4%] 335s testsuite/MDAnalysisTests/analysis/test_waterdynamics.py::test_SurvivalProbability_intermittency1and2 PASSED [ 4%] 335s testsuite/MDAnalysisTests/analysis/test_waterdynamics.py::test_SurvivalProbability_intermittency2lacking PASSED [ 4%] 335s testsuite/MDAnalysisTests/analysis/test_waterdynamics.py::test_SurvivalProbability_intermittency1_step5_noSkipping PASSED [ 4%] 335s testsuite/MDAnalysisTests/analysis/test_waterdynamics.py::test_SurvivalProbability_intermittency1_step5_Skipping PASSED [ 4%] 335s testsuite/MDAnalysisTests/analysis/test_waterdynamics.py::test_intermittency_none PASSED [ 4%] 335s testsuite/MDAnalysisTests/analysis/test_waterdynamics.py::test_intermittency_1and2 PASSED [ 4%] 335s testsuite/MDAnalysisTests/analysis/test_waterdynamics.py::test_intermittency_2tooShort PASSED [ 4%] 335s testsuite/MDAnalysisTests/analysis/test_waterdynamics.py::test_intermittency_setsOfSets PASSED [ 4%] 335s testsuite/MDAnalysisTests/analysis/test_waterdynamics.py::test_autocorrelation_alwaysPresent PASSED [ 4%] 335s testsuite/MDAnalysisTests/analysis/test_waterdynamics.py::test_autocorrelation_definedTaus PASSED [ 4%] 335s testsuite/MDAnalysisTests/analysis/test_waterdynamics.py::test_autocorrelation_intermittency1_windowJump_intermittencyAll PASSED [ 4%] 335s testsuite/MDAnalysisTests/analysis/test_waterdynamics.py::test_autocorrelation_windowBigJump PASSED [ 4%] 335s testsuite/MDAnalysisTests/analysis/test_waterdynamics.py::test_autocorrelation_windowBigJump_absence PASSED [ 4%] 335s testsuite/MDAnalysisTests/analysis/test_waterdynamics.py::test_autocorrelation_intermittency1_many PASSED [ 4%] 335s testsuite/MDAnalysisTests/analysis/test_waterdynamics.py::test_autocorrelation_intermittency2_windowBigJump PASSED [ 4%] 335s testsuite/MDAnalysisTests/analysis/test_waterdynamics.py::test_SurvivalProbability_t0tf PASSED [ 4%] 335s testsuite/MDAnalysisTests/analysis/test_waterdynamics.py::test_SurvivalProbability_definedTaus PASSED [ 4%] 335s testsuite/MDAnalysisTests/analysis/test_waterdynamics.py::test_SurvivalProbability_zeroMolecules PASSED [ 4%] 335s testsuite/MDAnalysisTests/analysis/test_waterdynamics.py::test_SurvivalProbability_alwaysPresent PASSED [ 4%] 335s testsuite/MDAnalysisTests/analysis/test_waterdynamics.py::test_SurvivalProbability_stepLargerThanDtmax PASSED [ 4%] 335s testsuite/MDAnalysisTests/analysis/test_waterdynamics.py::test_SurvivalProbability_stepEqualDtMax PASSED [ 4%] 335s testsuite/MDAnalysisTests/analysis/test_wbridge.py::TestWaterBridgeAnalysis::test_nodata PASSED [ 4%] 335s testsuite/MDAnalysisTests/analysis/test_wbridge.py::TestWaterBridgeAnalysis::test_selection_type_error PASSED [ 4%] 335s testsuite/MDAnalysisTests/analysis/test_wbridge.py::TestWaterBridgeAnalysis::test_distance_type_error PASSED [ 4%] 335s testsuite/MDAnalysisTests/analysis/test_wbridge.py::TestWaterBridgeAnalysis::test_selection2_type_error PASSED [ 4%] 335s testsuite/MDAnalysisTests/analysis/test_wbridge.py::TestWaterBridgeAnalysis::test_empty_selection PASSED [ 4%] 335s testsuite/MDAnalysisTests/analysis/test_wbridge.py::TestWaterBridgeAnalysis::test_loop PASSED [ 5%] 335s testsuite/MDAnalysisTests/analysis/test_wbridge.py::TestWaterBridgeAnalysis::test_donor_accepter[hydrogen] PASSED [ 5%] 335s testsuite/MDAnalysisTests/analysis/test_wbridge.py::TestWaterBridgeAnalysis::test_donor_accepter[heavy] PASSED [ 5%] 335s testsuite/MDAnalysisTests/analysis/test_wbridge.py::TestWaterBridgeAnalysis::test_donor_accepter_pbc[hydrogen] PASSED [ 5%] 335s testsuite/MDAnalysisTests/analysis/test_wbridge.py::TestWaterBridgeAnalysis::test_donor_accepter_pbc[heavy] PASSED [ 5%] 335s testsuite/MDAnalysisTests/analysis/test_wbridge.py::TestWaterBridgeAnalysis::test_accepter_donor[hydrogen] PASSED [ 5%] 335s testsuite/MDAnalysisTests/analysis/test_wbridge.py::TestWaterBridgeAnalysis::test_accepter_donor[heavy] PASSED [ 5%] 335s testsuite/MDAnalysisTests/analysis/test_wbridge.py::TestWaterBridgeAnalysis::test_acceptor_water_accepter[hydrogen] PASSED [ 5%] 335s testsuite/MDAnalysisTests/analysis/test_wbridge.py::TestWaterBridgeAnalysis::test_acceptor_water_accepter[heavy] PASSED [ 5%] 335s testsuite/MDAnalysisTests/analysis/test_wbridge.py::TestWaterBridgeAnalysis::test_donor_water_accepter[hydrogen] PASSED [ 5%] 335s testsuite/MDAnalysisTests/analysis/test_wbridge.py::TestWaterBridgeAnalysis::test_donor_water_accepter[heavy] PASSED [ 5%] 335s testsuite/MDAnalysisTests/analysis/test_wbridge.py::TestWaterBridgeAnalysis::test_acceptor_water_donor[hydrogen] PASSED [ 5%] 335s testsuite/MDAnalysisTests/analysis/test_wbridge.py::TestWaterBridgeAnalysis::test_acceptor_water_donor[heavy] PASSED [ 5%] 335s testsuite/MDAnalysisTests/analysis/test_wbridge.py::TestWaterBridgeAnalysis::test_donor_water_donor[hydrogen] PASSED [ 5%] 335s testsuite/MDAnalysisTests/analysis/test_wbridge.py::TestWaterBridgeAnalysis::test_donor_water_donor[heavy] PASSED [ 5%] 335s testsuite/MDAnalysisTests/analysis/test_wbridge.py::TestWaterBridgeAnalysis::test_empty PASSED [ 5%] 335s testsuite/MDAnalysisTests/analysis/test_wbridge.py::TestWaterBridgeAnalysis::test_same_selection PASSED [ 5%] 335s testsuite/MDAnalysisTests/analysis/test_wbridge.py::TestWaterBridgeAnalysis::test_acceptor_2water_accepter[hydrogen] PASSED [ 5%] 335s testsuite/MDAnalysisTests/analysis/test_wbridge.py::TestWaterBridgeAnalysis::test_acceptor_2water_accepter[heavy] PASSED [ 5%] 335s testsuite/MDAnalysisTests/analysis/test_wbridge.py::TestWaterBridgeAnalysis::test_acceptor_3water_accepter[hydrogen] PASSED [ 5%] 335s testsuite/MDAnalysisTests/analysis/test_wbridge.py::TestWaterBridgeAnalysis::test_acceptor_3water_accepter[heavy] PASSED [ 5%] 335s testsuite/MDAnalysisTests/analysis/test_wbridge.py::TestWaterBridgeAnalysis::test_acceptor_4water_accepter[hydrogen] PASSED [ 5%] 335s testsuite/MDAnalysisTests/analysis/test_wbridge.py::TestWaterBridgeAnalysis::test_acceptor_4water_accepter[heavy] PASSED [ 5%] 335s testsuite/MDAnalysisTests/analysis/test_wbridge.py::TestWaterBridgeAnalysis::test_acceptor_22water_accepter[hydrogen] PASSED [ 5%] 335s testsuite/MDAnalysisTests/analysis/test_wbridge.py::TestWaterBridgeAnalysis::test_acceptor_22water_accepter[heavy] PASSED [ 5%] 335s testsuite/MDAnalysisTests/analysis/test_wbridge.py::TestWaterBridgeAnalysis::test_acceptor_12water_accepter[hydrogen] PASSED [ 5%] 335s testsuite/MDAnalysisTests/analysis/test_wbridge.py::TestWaterBridgeAnalysis::test_acceptor_12water_accepter[heavy] PASSED [ 5%] 335s testsuite/MDAnalysisTests/analysis/test_wbridge.py::TestWaterBridgeAnalysis::test_count_by_type_single_link PASSED [ 5%] 335s testsuite/MDAnalysisTests/analysis/test_wbridge.py::TestWaterBridgeAnalysis::test_count_by_type_multiple_link PASSED [ 5%] 335s testsuite/MDAnalysisTests/analysis/test_wbridge.py::TestWaterBridgeAnalysis::test_count_by_type_multiple_frame PASSED [ 5%] 335s testsuite/MDAnalysisTests/analysis/test_wbridge.py::TestWaterBridgeAnalysis::test_count_by_type_filter PASSED [ 5%] 335s testsuite/MDAnalysisTests/analysis/test_wbridge.py::TestWaterBridgeAnalysis::test_count_by_type_merge PASSED [ 5%] 335s testsuite/MDAnalysisTests/analysis/test_wbridge.py::TestWaterBridgeAnalysis::test_count_by_type_order PASSED [ 5%] 335s testsuite/MDAnalysisTests/analysis/test_wbridge.py::TestWaterBridgeAnalysis::test_generate_table_hba PASSED [ 5%] 335s testsuite/MDAnalysisTests/analysis/test_wbridge.py::TestWaterBridgeAnalysis::test_generate_table_s1s2 PASSED [ 5%] 335s testsuite/MDAnalysisTests/analysis/test_wbridge.py::TestWaterBridgeAnalysis::test_duplicate_water PASSED [ 5%] 335s testsuite/MDAnalysisTests/analysis/test_wbridge.py::TestWaterBridgeAnalysis::test_warn_results_deprecated PASSED [ 5%] 335s testsuite/MDAnalysisTests/auxiliary/test_core.py::test_get_auxreader_for_none PASSED [ 5%] 335s testsuite/MDAnalysisTests/auxiliary/test_core.py::test_get_auxreader_for_wrong_auxdata PASSED [ 5%] 335s testsuite/MDAnalysisTests/auxiliary/test_core.py::test_get_auxreader_for_wrong_format PASSED [ 5%] 335s testsuite/MDAnalysisTests/auxiliary/test_core.py::test_notimplemented_read_next_timestep PASSED [ 5%] 335s testsuite/MDAnalysisTests/auxiliary/test_core.py::test_notimplemented_memory_usage PASSED [ 5%] 335s testsuite/MDAnalysisTests/auxiliary/test_edr.py::test_pyedr_not_present_raises PASSED [ 5%] 335s testsuite/MDAnalysisTests/auxiliary/test_edr.py::TestEDRReader::test_raise_error_no_auxdata_provided SKIPPED [ 5%] 335s testsuite/MDAnalysisTests/auxiliary/test_edr.py::TestEDRReader::test_n_steps SKIPPED [ 5%] 335s testsuite/MDAnalysisTests/auxiliary/test_edr.py::TestEDRReader::test_initial_time SKIPPED [ 5%] 335s testsuite/MDAnalysisTests/auxiliary/test_edr.py::TestEDRReader::test_first_step SKIPPED [ 5%] 335s testsuite/MDAnalysisTests/auxiliary/test_edr.py::TestEDRReader::test_next SKIPPED [ 5%] 335s testsuite/MDAnalysisTests/auxiliary/test_edr.py::TestEDRReader::test_rewind SKIPPED [ 5%] 335s testsuite/MDAnalysisTests/auxiliary/test_edr.py::TestEDRReader::test_move_to_step SKIPPED [ 5%] 335s testsuite/MDAnalysisTests/auxiliary/test_edr.py::TestEDRReader::test_last_step SKIPPED [ 5%] 335s testsuite/MDAnalysisTests/auxiliary/test_edr.py::TestEDRReader::test_next_past_last_step_raises_StopIteration SKIPPED [ 5%] 335s testsuite/MDAnalysisTests/auxiliary/test_edr.py::TestEDRReader::test_move_to_invalid_step_raises_IndexError SKIPPED [ 5%] 335s testsuite/MDAnalysisTests/auxiliary/test_edr.py::TestEDRReader::test_invalid_step_to_time_raises_ValueError SKIPPED [ 5%] 335s testsuite/MDAnalysisTests/auxiliary/test_edr.py::TestEDRReader::test_slice_start_after_stop_raises_IndexError SKIPPED [ 5%] 335s testsuite/MDAnalysisTests/auxiliary/test_edr.py::TestEDRReader::test_slice_out_of_range_raises_IndexError SKIPPED [ 5%] 335s testsuite/MDAnalysisTests/auxiliary/test_edr.py::TestEDRReader::test_slice_non_int_raises_TypeError SKIPPED [ 5%] 335s testsuite/MDAnalysisTests/auxiliary/test_edr.py::TestEDRReader::test_bad_represent_raises_ValueError SKIPPED [ 5%] 335s testsuite/MDAnalysisTests/auxiliary/test_edr.py::TestEDRReader::test_data_selector SKIPPED [ 5%] 335s testsuite/MDAnalysisTests/auxiliary/test_edr.py::TestEDRReader::test_no_constant_dt SKIPPED [ 5%] 335s testsuite/MDAnalysisTests/auxiliary/test_edr.py::TestEDRReader::test_update_ts_without_auxname_raises_ValueError SKIPPED [ 5%] 335s testsuite/MDAnalysisTests/auxiliary/test_edr.py::TestEDRReader::test_represent_as_closest_with_cutoff SKIPPED [ 5%] 335s testsuite/MDAnalysisTests/auxiliary/test_edr.py::TestEDRReader::test_get_auxreader_for SKIPPED [ 5%] 335s testsuite/MDAnalysisTests/auxiliary/test_edr.py::TestEDRReader::test_auxiliary_read_ts_rewind SKIPPED [ 5%] 335s testsuite/MDAnalysisTests/auxiliary/test_edr.py::TestEDRReader::test_get_description SKIPPED [ 5%] 335s testsuite/MDAnalysisTests/auxiliary/test_edr.py::TestEDRReader::test_load_from_description SKIPPED [ 5%] 335s testsuite/MDAnalysisTests/auxiliary/test_edr.py::TestEDRReader::test_step_to_frame_out_of_bounds SKIPPED [ 5%] 335s testsuite/MDAnalysisTests/auxiliary/test_edr.py::TestEDRReader::test_step_to_frame_no_time_diff SKIPPED [ 5%] 335s testsuite/MDAnalysisTests/auxiliary/test_edr.py::TestEDRReader::test_go_to_step_fail SKIPPED [ 5%] 335s testsuite/MDAnalysisTests/auxiliary/test_edr.py::TestEDRReader::test_set_constant_dt[True] SKIPPED [ 5%] 335s testsuite/MDAnalysisTests/auxiliary/test_edr.py::TestEDRReader::test_set_constant_dt[False] SKIPPED [ 5%] 335s testsuite/MDAnalysisTests/auxiliary/test_edr.py::TestEDRReader::test_copy SKIPPED [ 5%] 335s testsuite/MDAnalysisTests/auxiliary/test_edr.py::TestEDRReader::test_step_to_frame_time_diff SKIPPED [ 5%] 335s testsuite/MDAnalysisTests/auxiliary/test_edr.py::TestEDRReader::test_read_lower_freq_timestep SKIPPED [ 5%] 335s testsuite/MDAnalysisTests/auxiliary/test_edr.py::TestEDRReader::test_read_higher_freq_timestep SKIPPED [ 5%] 335s testsuite/MDAnalysisTests/auxiliary/test_edr.py::TestEDRReader::test_read_offset_timestep SKIPPED [ 5%] 335s testsuite/MDAnalysisTests/auxiliary/test_edr.py::TestEDRReader::test_represent_as_average SKIPPED [ 5%] 335s testsuite/MDAnalysisTests/auxiliary/test_edr.py::TestEDRReader::test_represent_as_average_with_cutoff SKIPPED [ 5%] 335s testsuite/MDAnalysisTests/auxiliary/test_edr.py::TestEDRReader::test_add_all_terms_from_file SKIPPED [ 5%] 335s testsuite/MDAnalysisTests/auxiliary/test_edr.py::TestEDRReader::test_add_all_terms_from_reader SKIPPED [ 5%] 335s testsuite/MDAnalysisTests/auxiliary/test_edr.py::TestEDRReader::test_add_term_list_custom_names_from_file SKIPPED [ 5%] 335s testsuite/MDAnalysisTests/auxiliary/test_edr.py::TestEDRReader::test_add_term_list_custom_names_from_reader SKIPPED [ 5%] 335s testsuite/MDAnalysisTests/auxiliary/test_edr.py::TestEDRReader::test_raise_error_if_auxname_already_assigned SKIPPED [ 5%] 335s testsuite/MDAnalysisTests/auxiliary/test_edr.py::TestEDRReader::test_add_single_term_custom_name_from_file SKIPPED [ 5%] 335s testsuite/MDAnalysisTests/auxiliary/test_edr.py::TestEDRReader::test_add_single_term_custom_name_from_reader SKIPPED [ 5%] 335s testsuite/MDAnalysisTests/auxiliary/test_edr.py::TestEDRReader::test_terms_update_on_iter SKIPPED [ 5%] 335s testsuite/MDAnalysisTests/auxiliary/test_edr.py::TestEDRReader::test_invalid_data_selector SKIPPED [ 5%] 335s testsuite/MDAnalysisTests/auxiliary/test_edr.py::TestEDRReader::test_read_all_times SKIPPED [ 5%] 335s testsuite/MDAnalysisTests/auxiliary/test_edr.py::TestEDRReader::test_get_data_from_string SKIPPED [ 5%] 335s testsuite/MDAnalysisTests/auxiliary/test_edr.py::TestEDRReader::test_get_data_from_list SKIPPED [ 5%] 335s testsuite/MDAnalysisTests/auxiliary/test_edr.py::TestEDRReader::test_get_data_everything SKIPPED [ 5%] 335s testsuite/MDAnalysisTests/auxiliary/test_edr.py::TestEDRReader::test_get_data_invalid_selections[42] SKIPPED [ 5%] 335s testsuite/MDAnalysisTests/auxiliary/test_edr.py::TestEDRReader::test_get_data_invalid_selections[Not a valid term] SKIPPED [ 5%] 335s testsuite/MDAnalysisTests/auxiliary/test_edr.py::TestEDRReader::test_get_data_invalid_selections[get_data_input2] SKIPPED [ 5%] 335s testsuite/MDAnalysisTests/auxiliary/test_edr.py::TestEDRReader::test_warning_when_space_in_aux_spec SKIPPED [ 5%] 335s testsuite/MDAnalysisTests/auxiliary/test_edr.py::TestEDRReader::test_warn_too_much_memory_usage SKIPPED [ 5%] 335s testsuite/MDAnalysisTests/auxiliary/test_edr.py::TestEDRReader::test_auxreader_picklable SKIPPED [ 5%] 335s testsuite/MDAnalysisTests/auxiliary/test_edr.py::TestEDRReader::test_units_are_converted_by_EDRReader SKIPPED [ 5%] 335s testsuite/MDAnalysisTests/auxiliary/test_edr.py::TestEDRReader::test_warning_when_unknown_unit SKIPPED [ 5%] 335s testsuite/MDAnalysisTests/auxiliary/test_edr.py::TestEDRReader::test_unit_conversion_is_optional SKIPPED [ 5%] 335s testsuite/MDAnalysisTests/auxiliary/test_edr.py::test_single_frame_input_file SKIPPED [ 5%] 335s testsuite/MDAnalysisTests/auxiliary/test_xvg.py::TestXVGStep::test_select_time_none PASSED [ 5%] 335s testsuite/MDAnalysisTests/auxiliary/test_xvg.py::TestXVGStep::test_select_time_invalid_index PASSED [ 5%] 335s testsuite/MDAnalysisTests/auxiliary/test_xvg.py::TestXVGStep::test_select_data_none PASSED [ 5%] 335s testsuite/MDAnalysisTests/auxiliary/test_xvg.py::TestXVGReader::test_raise_error_no_auxdata_provided PASSED [ 5%] 335s testsuite/MDAnalysisTests/auxiliary/test_xvg.py::TestXVGReader::test_n_steps PASSED [ 5%] 335s testsuite/MDAnalysisTests/auxiliary/test_xvg.py::TestXVGReader::test_initial_time PASSED [ 5%] 335s testsuite/MDAnalysisTests/auxiliary/test_xvg.py::TestXVGReader::test_first_step PASSED [ 5%] 335s testsuite/MDAnalysisTests/auxiliary/test_xvg.py::TestXVGReader::test_next PASSED [ 5%] 335s testsuite/MDAnalysisTests/auxiliary/test_xvg.py::TestXVGReader::test_rewind PASSED [ 5%] 335s testsuite/MDAnalysisTests/auxiliary/test_xvg.py::TestXVGReader::test_move_to_step PASSED [ 5%] 335s testsuite/MDAnalysisTests/auxiliary/test_xvg.py::TestXVGReader::test_last_step PASSED [ 5%] 335s testsuite/MDAnalysisTests/auxiliary/test_xvg.py::TestXVGReader::test_next_past_last_step_raises_StopIteration PASSED [ 5%] 335s testsuite/MDAnalysisTests/auxiliary/test_xvg.py::TestXVGReader::test_move_to_invalid_step_raises_IndexError PASSED [ 5%] 335s testsuite/MDAnalysisTests/auxiliary/test_xvg.py::TestXVGReader::test_invalid_step_to_time_raises_ValueError PASSED [ 5%] 335s testsuite/MDAnalysisTests/auxiliary/test_xvg.py::TestXVGReader::test_slice_start_after_stop_raises_IndexError PASSED [ 5%] 335s testsuite/MDAnalysisTests/auxiliary/test_xvg.py::TestXVGReader::test_slice_out_of_range_raises_IndexError PASSED [ 5%] 335s testsuite/MDAnalysisTests/auxiliary/test_xvg.py::TestXVGReader::test_slice_non_int_raises_TypeError PASSED [ 5%] 335s testsuite/MDAnalysisTests/auxiliary/test_xvg.py::TestXVGReader::test_bad_represent_raises_ValueError PASSED [ 5%] 335s testsuite/MDAnalysisTests/auxiliary/test_xvg.py::TestXVGReader::test_data_selector PASSED [ 5%] 335s testsuite/MDAnalysisTests/auxiliary/test_xvg.py::TestXVGReader::test_no_constant_dt PASSED [ 5%] 335s testsuite/MDAnalysisTests/auxiliary/test_xvg.py::TestXVGReader::test_update_ts_without_auxname_raises_ValueError PASSED [ 5%] 335s testsuite/MDAnalysisTests/auxiliary/test_xvg.py::TestXVGReader::test_read_lower_freq_timestep PASSED [ 5%] 335s testsuite/MDAnalysisTests/auxiliary/test_xvg.py::TestXVGReader::test_represent_as_average PASSED [ 5%] 335s testsuite/MDAnalysisTests/auxiliary/test_xvg.py::TestXVGReader::test_represent_as_average_with_cutoff PASSED [ 5%] 335s testsuite/MDAnalysisTests/auxiliary/test_xvg.py::TestXVGReader::test_read_offset_timestep PASSED [ 5%] 335s testsuite/MDAnalysisTests/auxiliary/test_xvg.py::TestXVGReader::test_represent_as_closest_with_cutoff PASSED [ 5%] 335s testsuite/MDAnalysisTests/auxiliary/test_xvg.py::TestXVGReader::test_read_higher_freq_timestep PASSED [ 5%] 335s testsuite/MDAnalysisTests/auxiliary/test_xvg.py::TestXVGReader::test_get_auxreader_for PASSED [ 5%] 335s testsuite/MDAnalysisTests/auxiliary/test_xvg.py::TestXVGReader::test_auxiliary_read_ts_rewind PASSED [ 5%] 335s testsuite/MDAnalysisTests/auxiliary/test_xvg.py::TestXVGReader::test_get_description PASSED [ 5%] 335s testsuite/MDAnalysisTests/auxiliary/test_xvg.py::TestXVGReader::test_load_from_description PASSED [ 5%] 335s testsuite/MDAnalysisTests/auxiliary/test_xvg.py::TestXVGReader::test_step_to_frame_out_of_bounds PASSED [ 5%] 335s testsuite/MDAnalysisTests/auxiliary/test_xvg.py::TestXVGReader::test_step_to_frame_no_time_diff PASSED [ 5%] 335s testsuite/MDAnalysisTests/auxiliary/test_xvg.py::TestXVGReader::test_step_to_frame_time_diff PASSED [ 5%] 335s testsuite/MDAnalysisTests/auxiliary/test_xvg.py::TestXVGReader::test_go_to_step_fail PASSED [ 5%] 335s testsuite/MDAnalysisTests/auxiliary/test_xvg.py::TestXVGReader::test_set_constant_dt[True] PASSED [ 5%] 335s testsuite/MDAnalysisTests/auxiliary/test_xvg.py::TestXVGReader::test_set_constant_dt[False] PASSED [ 5%] 335s testsuite/MDAnalysisTests/auxiliary/test_xvg.py::TestXVGReader::test_copy PASSED [ 5%] 335s testsuite/MDAnalysisTests/auxiliary/test_xvg.py::TestXVGReader::test_changing_n_col_raises_ValueError PASSED [ 5%] 335s testsuite/MDAnalysisTests/auxiliary/test_xvg.py::TestXVGReader::test_data_selector_out_of_range_raises_ValueError PASSED [ 5%] 335s testsuite/MDAnalysisTests/auxiliary/test_xvg.py::TestXVGFileReader::test_raise_error_no_auxdata_provided PASSED [ 5%] 335s testsuite/MDAnalysisTests/auxiliary/test_xvg.py::TestXVGFileReader::test_n_steps PASSED [ 5%] 335s testsuite/MDAnalysisTests/auxiliary/test_xvg.py::TestXVGFileReader::test_initial_time PASSED [ 5%] 335s testsuite/MDAnalysisTests/auxiliary/test_xvg.py::TestXVGFileReader::test_first_step PASSED [ 5%] 335s testsuite/MDAnalysisTests/auxiliary/test_xvg.py::TestXVGFileReader::test_next PASSED [ 5%] 335s testsuite/MDAnalysisTests/auxiliary/test_xvg.py::TestXVGFileReader::test_rewind PASSED [ 5%] 335s testsuite/MDAnalysisTests/auxiliary/test_xvg.py::TestXVGFileReader::test_move_to_step PASSED [ 5%] 335s testsuite/MDAnalysisTests/auxiliary/test_xvg.py::TestXVGFileReader::test_last_step PASSED [ 5%] 335s testsuite/MDAnalysisTests/auxiliary/test_xvg.py::TestXVGFileReader::test_next_past_last_step_raises_StopIteration PASSED [ 5%] 335s testsuite/MDAnalysisTests/auxiliary/test_xvg.py::TestXVGFileReader::test_move_to_invalid_step_raises_IndexError PASSED [ 5%] 335s testsuite/MDAnalysisTests/auxiliary/test_xvg.py::TestXVGFileReader::test_invalid_step_to_time_raises_ValueError PASSED [ 5%] 335s testsuite/MDAnalysisTests/auxiliary/test_xvg.py::TestXVGFileReader::test_slice_start_after_stop_raises_IndexError PASSED [ 5%] 335s testsuite/MDAnalysisTests/auxiliary/test_xvg.py::TestXVGFileReader::test_slice_out_of_range_raises_IndexError PASSED [ 5%] 335s testsuite/MDAnalysisTests/auxiliary/test_xvg.py::TestXVGFileReader::test_slice_non_int_raises_TypeError PASSED [ 5%] 335s testsuite/MDAnalysisTests/auxiliary/test_xvg.py::TestXVGFileReader::test_bad_represent_raises_ValueError PASSED [ 5%] 335s testsuite/MDAnalysisTests/auxiliary/test_xvg.py::TestXVGFileReader::test_data_selector PASSED [ 5%] 335s testsuite/MDAnalysisTests/auxiliary/test_xvg.py::TestXVGFileReader::test_no_constant_dt PASSED [ 5%] 335s testsuite/MDAnalysisTests/auxiliary/test_xvg.py::TestXVGFileReader::test_update_ts_without_auxname_raises_ValueError PASSED [ 5%] 335s testsuite/MDAnalysisTests/auxiliary/test_xvg.py::TestXVGFileReader::test_read_lower_freq_timestep PASSED [ 5%] 335s testsuite/MDAnalysisTests/auxiliary/test_xvg.py::TestXVGFileReader::test_represent_as_average PASSED [ 5%] 335s testsuite/MDAnalysisTests/auxiliary/test_xvg.py::TestXVGFileReader::test_represent_as_average_with_cutoff PASSED [ 5%] 335s testsuite/MDAnalysisTests/auxiliary/test_xvg.py::TestXVGFileReader::test_read_offset_timestep PASSED [ 5%] 335s testsuite/MDAnalysisTests/auxiliary/test_xvg.py::TestXVGFileReader::test_represent_as_closest_with_cutoff PASSED [ 5%] 335s testsuite/MDAnalysisTests/auxiliary/test_xvg.py::TestXVGFileReader::test_read_higher_freq_timestep PASSED [ 5%] 335s testsuite/MDAnalysisTests/auxiliary/test_xvg.py::TestXVGFileReader::test_auxiliary_read_ts_rewind PASSED [ 5%] 335s testsuite/MDAnalysisTests/auxiliary/test_xvg.py::TestXVGFileReader::test_get_description PASSED [ 5%] 335s testsuite/MDAnalysisTests/auxiliary/test_xvg.py::TestXVGFileReader::test_load_from_description PASSED [ 5%] 335s testsuite/MDAnalysisTests/auxiliary/test_xvg.py::TestXVGFileReader::test_step_to_frame_out_of_bounds PASSED [ 5%] 335s testsuite/MDAnalysisTests/auxiliary/test_xvg.py::TestXVGFileReader::test_step_to_frame_no_time_diff PASSED [ 5%] 335s testsuite/MDAnalysisTests/auxiliary/test_xvg.py::TestXVGFileReader::test_step_to_frame_time_diff PASSED [ 5%] 335s testsuite/MDAnalysisTests/auxiliary/test_xvg.py::TestXVGFileReader::test_go_to_step_fail PASSED [ 5%] 335s testsuite/MDAnalysisTests/auxiliary/test_xvg.py::TestXVGFileReader::test_set_constant_dt[True] PASSED [ 5%] 335s testsuite/MDAnalysisTests/auxiliary/test_xvg.py::TestXVGFileReader::test_set_constant_dt[False] PASSED [ 5%] 335s testsuite/MDAnalysisTests/auxiliary/test_xvg.py::TestXVGFileReader::test_copy PASSED [ 5%] 335s testsuite/MDAnalysisTests/auxiliary/test_xvg.py::TestXVGFileReader::test_changing_n_col_raises_ValueError PASSED [ 5%] 335s testsuite/MDAnalysisTests/auxiliary/test_xvg.py::TestXVGFileReader::test_data_selector_out_of_range_raises_ValueError PASSED [ 5%] 335s testsuite/MDAnalysisTests/auxiliary/test_xvg.py::TestXVGFileReader::test_get_auxreader_for PASSED [ 5%] 335s testsuite/MDAnalysisTests/auxiliary/test_xvg.py::TestXVGFileReader::test_reopen PASSED [ 5%] 335s testsuite/MDAnalysisTests/auxiliary/test_xvg.py::test_xvg_bz2 PASSED [ 5%] 335s testsuite/MDAnalysisTests/auxiliary/test_xvg.py::test_xvg_file_bz2 PASSED [ 5%] 335s testsuite/MDAnalysisTests/converters/test_base.py::test_coordinate_converterbase_warning PASSED [ 5%] 335s testsuite/MDAnalysisTests/converters/test_base.py::test_converters_converterbase_no_warning PASSED [ 5%] 335s testsuite/MDAnalysisTests/converters/test_rdkit.py::TestRequiresRDKit::test_converter_requires_rdkit PASSED [ 5%] 335s testsuite/MDAnalysisTests/converters/test_rdkit.py::TestRDKitReader::test_coordinates[mol2_mol-1] SKIPPED [ 6%] 335s testsuite/MDAnalysisTests/converters/test_rdkit.py::TestRDKitReader::test_coordinates[smiles_mol-3] SKIPPED [ 6%] 335s testsuite/MDAnalysisTests/converters/test_rdkit.py::TestRDKitReader::test_no_coordinates SKIPPED [ 6%] 335s testsuite/MDAnalysisTests/converters/test_rdkit.py::TestRDKitReader::test_compare_mol2reader SKIPPED [ 6%] 335s testsuite/MDAnalysisTests/converters/test_rdkit.py::TestRDKitConverter::test_no_atoms_attr SKIPPED [ 6%] 335s testsuite/MDAnalysisTests/converters/test_rdkit.py::TestRDKitConverter::test_single_atom_mol[[H]] SKIPPED [ 6%] 335s testsuite/MDAnalysisTests/converters/test_rdkit.py::TestRDKitConverter::test_single_atom_mol[C] SKIPPED [ 6%] 335s testsuite/MDAnalysisTests/converters/test_rdkit.py::TestRDKitConverter::test_single_atom_mol[O] SKIPPED [ 6%] 335s testsuite/MDAnalysisTests/converters/test_rdkit.py::TestRDKitConverter::test_single_atom_mol[[He]] SKIPPED [ 6%] 335s testsuite/MDAnalysisTests/converters/test_rdkit.py::TestRDKitConverter::test_mol_from_selection[PRO-14-1] SKIPPED [ 6%] 335s testsuite/MDAnalysisTests/converters/test_rdkit.py::TestRDKitConverter::test_mol_from_selection[ILE-38-1] SKIPPED [ 6%] 335s testsuite/MDAnalysisTests/converters/test_rdkit.py::TestRDKitConverter::test_mol_from_selection[ALA-20-2] SKIPPED [ 6%] 335s testsuite/MDAnalysisTests/converters/test_rdkit.py::TestRDKitConverter::test_mol_from_selection[GLY-21-3] SKIPPED [ 6%] 335s testsuite/MDAnalysisTests/converters/test_rdkit.py::TestRDKitConverter::test_monomer_info[resid 1-0] SKIPPED [ 6%] 335s testsuite/MDAnalysisTests/converters/test_rdkit.py::TestRDKitConverter::test_monomer_info[resname LYS and name NZ-1] SKIPPED [ 6%] 335s testsuite/MDAnalysisTests/converters/test_rdkit.py::TestRDKitConverter::test_monomer_info[resid 34 and altloc B-2] SKIPPED [ 6%] 335s testsuite/MDAnalysisTests/converters/test_rdkit.py::TestRDKitConverter::test_identical_topology[mol2_mol] SKIPPED [ 6%] 335s testsuite/MDAnalysisTests/converters/test_rdkit.py::TestRDKitConverter::test_identical_topology[smiles_mol] SKIPPED [ 6%] 335s testsuite/MDAnalysisTests/converters/test_rdkit.py::TestRDKitConverter::test_raise_requires_elements SKIPPED [ 6%] 335s testsuite/MDAnalysisTests/converters/test_rdkit.py::TestRDKitConverter::test_warn_guess_bonds SKIPPED [ 6%] 335s testsuite/MDAnalysisTests/converters/test_rdkit.py::TestRDKitConverter::test_bonds_outside_sel SKIPPED [ 6%] 335s testsuite/MDAnalysisTests/converters/test_rdkit.py::TestRDKitConverter::test_error_no_hydrogen SKIPPED [ 6%] 335s testsuite/MDAnalysisTests/converters/test_rdkit.py::TestRDKitConverter::test_error_no_hydrogen_implicit SKIPPED [ 6%] 335s testsuite/MDAnalysisTests/converters/test_rdkit.py::TestRDKitConverter::test_warning_no_hydrogen_force SKIPPED [ 6%] 335s testsuite/MDAnalysisTests/converters/test_rdkit.py::TestRDKitConverter::test_add_mda_attr_to_rdkit[names-N- N ] SKIPPED [ 6%] 335s testsuite/MDAnalysisTests/converters/test_rdkit.py::TestRDKitConverter::test_add_mda_attr_to_rdkit[names-CA- CA ] SKIPPED [ 6%] 335s testsuite/MDAnalysisTests/converters/test_rdkit.py::TestRDKitConverter::test_add_mda_attr_to_rdkit[names-CAT- CAT] SKIPPED [ 6%] 335s testsuite/MDAnalysisTests/converters/test_rdkit.py::TestRDKitConverter::test_add_mda_attr_to_rdkit[names-N1- N1 ] SKIPPED [ 6%] 335s testsuite/MDAnalysisTests/converters/test_rdkit.py::TestRDKitConverter::test_add_mda_attr_to_rdkit[names-CE2- CE2] SKIPPED [ 6%] 335s testsuite/MDAnalysisTests/converters/test_rdkit.py::TestRDKitConverter::test_add_mda_attr_to_rdkit[names-C12- C12] SKIPPED [ 6%] 335s testsuite/MDAnalysisTests/converters/test_rdkit.py::TestRDKitConverter::test_add_mda_attr_to_rdkit[names-HD12-HD12] SKIPPED [ 6%] 335s testsuite/MDAnalysisTests/converters/test_rdkit.py::TestRDKitConverter::test_add_mda_attr_to_rdkit[names-C123-C123] SKIPPED [ 6%] 335s testsuite/MDAnalysisTests/converters/test_rdkit.py::TestRDKitConverter::test_add_mda_attr_to_rdkit[altLocs-A-A] SKIPPED [ 6%] 335s testsuite/MDAnalysisTests/converters/test_rdkit.py::TestRDKitConverter::test_add_mda_attr_to_rdkit[chainIDs-B-B] SKIPPED [ 6%] 335s testsuite/MDAnalysisTests/converters/test_rdkit.py::TestRDKitConverter::test_add_mda_attr_to_rdkit[icodes-C-C] SKIPPED [ 6%] 335s testsuite/MDAnalysisTests/converters/test_rdkit.py::TestRDKitConverter::test_add_mda_attr_to_rdkit[occupancies-0.5-0.5] SKIPPED [ 6%] 335s testsuite/MDAnalysisTests/converters/test_rdkit.py::TestRDKitConverter::test_add_mda_attr_to_rdkit[resnames-LIG-LIG] SKIPPED [ 6%] 335s testsuite/MDAnalysisTests/converters/test_rdkit.py::TestRDKitConverter::test_add_mda_attr_to_rdkit[resids-123-123] SKIPPED [ 6%] 335s testsuite/MDAnalysisTests/converters/test_rdkit.py::TestRDKitConverter::test_add_mda_attr_to_rdkit[segindices-1-1] SKIPPED [ 6%] 335s testsuite/MDAnalysisTests/converters/test_rdkit.py::TestRDKitConverter::test_add_mda_attr_to_rdkit[tempfactors-0.8-0.8] SKIPPED [ 6%] 335s testsuite/MDAnalysisTests/converters/test_rdkit.py::TestRDKitConverter::test_other_attributes[0] SKIPPED [ 6%] 335s testsuite/MDAnalysisTests/converters/test_rdkit.py::TestRDKitConverter::test_other_attributes[10] SKIPPED [ 6%] 335s testsuite/MDAnalysisTests/converters/test_rdkit.py::TestRDKitConverter::test_other_attributes[42] SKIPPED [ 6%] 335s testsuite/MDAnalysisTests/converters/test_rdkit.py::TestRDKitConverter::test_index_property[resname ALA] SKIPPED [ 6%] 335s testsuite/MDAnalysisTests/converters/test_rdkit.py::TestRDKitConverter::test_index_property[resname PRO and segid A] SKIPPED [ 6%] 335s testsuite/MDAnalysisTests/converters/test_rdkit.py::TestRDKitConverter::test_assign_coordinates SKIPPED [ 6%] 335s testsuite/MDAnalysisTests/converters/test_rdkit.py::TestRDKitConverter::test_assign_stereochemistry SKIPPED [ 6%] 335s testsuite/MDAnalysisTests/converters/test_rdkit.py::TestRDKitConverter::test_trajectory_coords SKIPPED [ 6%] 335s testsuite/MDAnalysisTests/converters/test_rdkit.py::TestRDKitConverter::test_nan_coords SKIPPED [ 6%] 335s testsuite/MDAnalysisTests/converters/test_rdkit.py::TestRDKitConverter::test_cache SKIPPED [ 6%] 335s testsuite/MDAnalysisTests/converters/test_rdkit.py::TestRDKitConverter::test_sanitize_fail_warning SKIPPED [ 6%] 335s testsuite/MDAnalysisTests/converters/test_rdkit.py::TestRDKitFunctions::test_infer_bond_orders[C(-[H])(-[H])(-[H])-[H]-C] SKIPPED [ 6%] 335s testsuite/MDAnalysisTests/converters/test_rdkit.py::TestRDKitFunctions::test_infer_bond_orders[[C](-[H])(-[H])-[C](-[H])-[H]-C=C] SKIPPED [ 6%] 335s testsuite/MDAnalysisTests/converters/test_rdkit.py::TestRDKitFunctions::test_infer_bond_orders[[C]1(-[H])-[C](-[H])-[C](-[H])-[C](-[H])-[C](-[H])-[C]1(-[H])-c1ccccc1] SKIPPED [ 6%] 335s testsuite/MDAnalysisTests/converters/test_rdkit.py::TestRDKitFunctions::test_infer_bond_orders[C-[C](-[H])-[O]-C(=O)C] SKIPPED [ 6%] 335s testsuite/MDAnalysisTests/converters/test_rdkit.py::TestRDKitFunctions::test_infer_bond_orders[[H]-[C](-[O])-[N](-[H])-[H]-C(=O)N] SKIPPED [ 6%] 335s testsuite/MDAnalysisTests/converters/test_rdkit.py::TestRDKitFunctions::test_infer_bond_orders[[N]-[C]-[H]-N#C] SKIPPED [ 6%] 335s testsuite/MDAnalysisTests/converters/test_rdkit.py::TestRDKitFunctions::test_infer_bond_orders[C-[C](-[O]-[H])-[O]-CC(=O)O] SKIPPED [ 6%] 335s testsuite/MDAnalysisTests/converters/test_rdkit.py::TestRDKitFunctions::test_infer_bond_orders[[P](-[O]-[H])(-[O]-[H])(-[O]-[H])-[O]-P(O)(O)(O)=O] SKIPPED [ 6%] 335s testsuite/MDAnalysisTests/converters/test_rdkit.py::TestRDKitFunctions::test_infer_bond_orders[[P](-[O]-[H])(-[O]-[H])(-[O])-[O]-P([O-])(O)(O)=O] SKIPPED [ 6%] 335s testsuite/MDAnalysisTests/converters/test_rdkit.py::TestRDKitFunctions::test_infer_bond_orders[[P](-[O]-[H])(-[O])(-[O])-[O]-P([O-])([O-])(O)=O] SKIPPED [ 6%] 335s testsuite/MDAnalysisTests/converters/test_rdkit.py::TestRDKitFunctions::test_infer_bond_orders[[P](-[O])(-[O])(-[O])-[O]-P([O-])([O-])([O-])=O] SKIPPED [ 6%] 335s testsuite/MDAnalysisTests/converters/test_rdkit.py::TestRDKitFunctions::test_infer_bond_orders[[H]-[O]-[N]-[O]-ON=O] SKIPPED [ 6%] 335s testsuite/MDAnalysisTests/converters/test_rdkit.py::TestRDKitFunctions::test_infer_bond_orders[[N]-[C]-[O]-N#C[O-]] SKIPPED [ 6%] 335s testsuite/MDAnalysisTests/converters/test_rdkit.py::TestRDKitFunctions::test_infer_charges[[C](-[H])(-[H])(-[H])-[O]-4--1] SKIPPED [ 6%] 335s testsuite/MDAnalysisTests/converters/test_rdkit.py::TestRDKitFunctions::test_infer_charges[[N]-[C]-[O]-2--1] SKIPPED [ 6%] 335s testsuite/MDAnalysisTests/converters/test_rdkit.py::TestRDKitFunctions::test_infer_charges[[N](-[H])(-[H])(-[H])-[H]-0-1] SKIPPED [ 6%] 335s testsuite/MDAnalysisTests/converters/test_rdkit.py::TestRDKitFunctions::test_infer_charges[C-[C](-[O])-[O]-3--1] SKIPPED [ 6%] 335s testsuite/MDAnalysisTests/converters/test_rdkit.py::TestRDKitFunctions::test_standardize_patterns[[S](-[O]-[H])(-[O]-[H])(-[O])-[O]-S(=O)(=O)(O)O] SKIPPED [ 6%] 335s testsuite/MDAnalysisTests/converters/test_rdkit.py::TestRDKitFunctions::test_standardize_patterns[[S](-[O]-[H])(-[O])(-[O])-[O]-S(=O)(=O)([O-])O] SKIPPED [ 6%] 335s 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testsuite/MDAnalysisTests/converters/test_rdkit.py::TestRDKitFunctions::test_set_atom_property[index-42-GetIntProp] SKIPPED [ 6%] 335s testsuite/MDAnalysisTests/converters/test_rdkit.py::TestRDKitFunctions::test_set_atom_property[index-value1-GetIntProp] SKIPPED [ 6%] 335s testsuite/MDAnalysisTests/converters/test_rdkit.py::TestRDKitFunctions::test_set_atom_property[index-value2-GetIntProp] SKIPPED [ 6%] 335s testsuite/MDAnalysisTests/converters/test_rdkit.py::TestRDKitFunctions::test_set_atom_property[index-value3-GetIntProp] SKIPPED [ 6%] 335s testsuite/MDAnalysisTests/converters/test_rdkit.py::TestRDKitFunctions::test_set_atom_property[index-value4-GetIntProp] SKIPPED [ 6%] 335s testsuite/MDAnalysisTests/converters/test_rdkit.py::TestRDKitFunctions::test_set_atom_property[index-value5-GetIntProp] SKIPPED [ 6%] 335s testsuite/MDAnalysisTests/converters/test_rdkit.py::TestRDKitFunctions::test_set_atom_property[index-value6-GetIntProp] SKIPPED [ 6%] 335s 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testsuite/MDAnalysisTests/converters/test_rdkit.py::TestRDKitFunctions::test_transfer_properties[c1ccc(cc1)-c1ccccc1-c1ccccc1] SKIPPED [ 6%] 335s testsuite/MDAnalysisTests/converters/test_rdkit.py::TestRDKitFunctions::test_transfer_properties[c1cc[nH]c1] SKIPPED [ 6%] 335s testsuite/MDAnalysisTests/converters/test_rdkit.py::TestRDKitFunctions::test_transfer_properties[O=C([C@H](CC1=C[NH1+]=CN1)[NH3+])[O-]] SKIPPED [ 6%] 335s testsuite/MDAnalysisTests/converters/test_rdkit.py::TestRDKitFunctions::test_order_independant[c1ccc(cc1)-c1ccccc1-c1ccccc1] SKIPPED [ 6%] 335s testsuite/MDAnalysisTests/converters/test_rdkit.py::TestRDKitFunctions::test_order_independant[c1cc[nH]c1] SKIPPED [ 6%] 335s testsuite/MDAnalysisTests/converters/test_rdkit.py::TestRDKitFunctions::test_order_independant[c1ccc(cc1)-c1ccc(-c2ccccc2)c(-c2ccccc2)c1-c1ccccc1] SKIPPED [ 6%] 335s testsuite/MDAnalysisTests/converters/test_rdkit.py::TestRDKitFunctions::test_order_independant[c1ccc2c(c1)c1ccccc1c1ccccc1c1ccccc1c1ccccc21] SKIPPED [ 6%] 335s testsuite/MDAnalysisTests/converters/test_rdkit.py::TestRDKitFunctions::test_order_independant[c1csc(c1)-c1ccoc1-c1cc[nH]c1] SKIPPED [ 6%] 335s testsuite/MDAnalysisTests/converters/test_rdkit.py::TestRDKitFunctions::test_order_independant[C1=C2C(=NC=N1)N=CN2] SKIPPED [ 6%] 335s testsuite/MDAnalysisTests/converters/test_rdkit.py::TestRDKitFunctions::test_order_independant[CN1C=NC(=C1SC2=NC=NC3=C2NC=N3)[N+](=O)[O-]] SKIPPED [ 6%] 335s testsuite/MDAnalysisTests/converters/test_rdkit.py::TestRDKitFunctions::test_order_independant[c1c[nH]c(c1)-c1ccc(s1)-c1ccoc1-c1c[nH]cc1-c1ccccc1] SKIPPED [ 6%] 335s testsuite/MDAnalysisTests/converters/test_rdkit.py::TestRDKitFunctions::test_order_independant[C=CC=CC=CC=CC=CC=C] SKIPPED [ 6%] 335s testsuite/MDAnalysisTests/converters/test_rdkit.py::TestRDKitFunctions::test_order_independant[NCCCCC([NH3+])C(=O)[O-]] SKIPPED [ 6%] 335s testsuite/MDAnalysisTests/converters/test_rdkit.py::TestRDKitFunctions::test_order_independant[CC(C=CC1=C(C)CCCC1(C)C)=CC=CC(C)=CC=[NH+]C] SKIPPED [ 6%] 335s testsuite/MDAnalysisTests/converters/test_rdkit.py::TestRDKitFunctions::test_order_independant[C#CC=C] SKIPPED [ 6%] 335s testsuite/MDAnalysisTests/converters/test_rdkit.py::TestRDKitFunctions::test_order_independant[O=C([C@H](CC1=CNC=N1)N)O] SKIPPED [ 6%] 335s testsuite/MDAnalysisTests/converters/test_rdkit.py::TestRDKitFunctions::test_order_independant[O=C([C@H](CC1=CN=CN1)N)O] SKIPPED [ 6%] 335s testsuite/MDAnalysisTests/converters/test_rdkit.py::TestRDKitFunctions::test_order_independant[O=C([C@H](CC1=C[NH1+]=CN1)[NH3+])[O-]] SKIPPED [ 6%] 335s testsuite/MDAnalysisTests/converters/test_rdkit.py::TestRDKitFunctions::test_order_independant[CCOC(=O)c1cc2cc(C(=O)O)ccc2[nH]1] SKIPPED [ 6%] 335s testsuite/MDAnalysisTests/converters/test_rdkit.py::TestRDKitFunctions::test_order_independant[[O-][n+]1cccnc1] SKIPPED [ 6%] 335s testsuite/MDAnalysisTests/converters/test_rdkit.py::TestRDKitFunctions::test_order_independant[C[n+]1ccccc1] SKIPPED [ 6%] 335s testsuite/MDAnalysisTests/converters/test_rdkit.py::TestRDKitFunctions::test_order_independant[[PH4+]] SKIPPED [ 6%] 335s testsuite/MDAnalysisTests/converters/test_rdkit.py::TestRDKitFunctions::test_order_independant[c1nc[nH]n1] SKIPPED [ 6%] 335s testsuite/MDAnalysisTests/converters/test_rdkit.py::TestRDKitFunctions::test_order_independant[CC(=O)C=C(C)N] SKIPPED [ 6%] 335s testsuite/MDAnalysisTests/converters/test_rdkit.py::TestRDKitFunctions::test_order_independant[CC(C)=CC=C[O-]] SKIPPED [ 6%] 335s testsuite/MDAnalysisTests/converters/test_rdkit.py::TestRDKitFunctions::test_order_independant[O=S(C)(C)=NC] SKIPPED [ 6%] 335s testsuite/MDAnalysisTests/converters/test_rdkit.py::TestRDKitFunctions::test_order_independant[Cc1ccc2c3ncn(Cc4ccco4)c(O)c-3nc2c1] SKIPPED [ 6%] 335s testsuite/MDAnalysisTests/converters/test_rdkit.py::TestRDKitFunctions::test_order_independant[CCCC/C=C/C#CC#CCCCCCCCC(=O)O] SKIPPED [ 6%] 335s testsuite/MDAnalysisTests/converters/test_rdkit.py::TestRDKitFunctions::test_order_independant[c1c2c(=O)n3cccc(C)c3nc2n(C)c(=N)c1C(=O)NCc1cnccc1] SKIPPED [ 6%] 335s testsuite/MDAnalysisTests/converters/test_rdkit.py::TestRDKitFunctions::test_order_independant[N#Cc1c[nH]c(C(=O)NC(=O)c2cc[n+]([O-])cc2)n1] SKIPPED [ 6%] 335s testsuite/MDAnalysisTests/converters/test_rdkit.py::TestRDKitFunctions::test_order_independant[C[C@@H](Oc1cc(F)ccc1Nc1ncnc2cc(N=S3(=O)CCC3)cc(F)c12)C(=O)NCC#N] SKIPPED [ 6%] 335s testsuite/MDAnalysisTests/converters/test_rdkit.py::TestRDKitFunctions::test_order_independant[[O-][n+]1onc2ccccc21] SKIPPED [ 6%] 335s testsuite/MDAnalysisTests/converters/test_rdkit.py::TestRDKitFunctions::test_order_independant[Cc1cc[n+](CC[n+]2ccc(C)cc2)cc1] SKIPPED [ 6%] 335s testsuite/MDAnalysisTests/converters/test_rdkit.py::TestRDKitFunctions::test_order_independant[[O-]c1ccccc1] SKIPPED [ 6%] 335s testsuite/MDAnalysisTests/converters/test_rdkit.py::TestRDKitFunctions::test_order_independant[[O-]C=CC=CCC=CC=[N+](C)C] SKIPPED [ 6%] 335s testsuite/MDAnalysisTests/converters/test_rdkit.py::TestRDKitFunctions::test_order_independant[C=[N+](-[O-])-C] SKIPPED [ 6%] 335s testsuite/MDAnalysisTests/converters/test_rdkit.py::TestRDKitFunctions::test_order_independant[C-[N-]-C(=O)C] SKIPPED [ 6%] 335s testsuite/MDAnalysisTests/converters/test_rdkit.py::TestRDKitFunctions::test_order_independant[C[C@H](N)C(=O)O] SKIPPED [ 6%] 335s testsuite/MDAnalysisTests/converters/test_rdkit.py::TestRDKitFunctions::test_order_independant[NCC(=O)O] SKIPPED [ 6%] 335s testsuite/MDAnalysisTests/converters/test_rdkit.py::TestRDKitFunctions::test_order_independant[CC[C@H](C)[C@H](N)C(=O)O] SKIPPED [ 6%] 335s testsuite/MDAnalysisTests/converters/test_rdkit.py::TestRDKitFunctions::test_order_independant[CC(C)C[C@H](N)C(=O)O] SKIPPED [ 6%] 335s testsuite/MDAnalysisTests/converters/test_rdkit.py::TestRDKitFunctions::test_order_independant[O=C(O)[C@@H]1CCCN1] SKIPPED [ 6%] 335s testsuite/MDAnalysisTests/converters/test_rdkit.py::TestRDKitFunctions::test_order_independant[CC(C)[C@H](N)C(=O)O] SKIPPED [ 6%] 335s testsuite/MDAnalysisTests/converters/test_rdkit.py::TestRDKitFunctions::test_order_independant[N[C@@H](Cc1ccccc1)C(=O)O] SKIPPED [ 6%] 335s testsuite/MDAnalysisTests/converters/test_rdkit.py::TestRDKitFunctions::test_order_independant[N[C@@H](Cc1c[nH]c2ccccc12)C(=O)O] SKIPPED [ 6%] 335s testsuite/MDAnalysisTests/converters/test_rdkit.py::TestRDKitFunctions::test_order_independant[N[C@@H](Cc1ccc(O)cc1)C(=O)O] SKIPPED [ 6%] 335s 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testsuite/MDAnalysisTests/converters/test_rdkit.py::TestRDKitFunctions::test_order_independant[O=c1ccn([C@H]2C[C@H](OP(=O)(O)O)[C@@H](COP(=O)(O)O)O2)c(=O)[nH]1] SKIPPED [ 6%] 335s testsuite/MDAnalysisTests/converters/test_rdkit.py::TestRDKitFunctions::test_order_independant[Nc1ccn([C@H]2C[C@H](OP(=O)(O)O)[C@@H](COP(=O)(O)O)O2)c(=O)n1] SKIPPED [ 6%] 335s testsuite/MDAnalysisTests/converters/test_rdkit.py::TestRDKitFunctions::test_order_independant[Nc1nc2c(ncn2[C@H]2C[C@H](OP(=O)(O)O)[C@@H](COP(=O)(O)O)O2)c(=O)[nH]1] SKIPPED [ 6%] 335s testsuite/MDAnalysisTests/converters/test_rdkit.py::TestRDKitFunctions::test_order_independant[CC(C)NS(C)(=O)=Nc1ccc(-c2ccc(-c3nc4[nH]c(O[C@@H]5CO[C@@H]6[C@H](O)CO[C@H]56)nc4cc3Cl)cc2)cc1 CHEMBL4111464] SKIPPED [ 6%] 335s testsuite/MDAnalysisTests/converters/test_rdkit.py::TestRDKitFunctions::test_order_independant[C[n+]1c2ccccc2c(C(=O)O)c2[nH]c3ccc(Br)cc3c21 CHEMBL511591] SKIPPED [ 6%] 335s testsuite/MDAnalysisTests/converters/test_rdkit.py::TestRDKitFunctions::test_order_independant[C[n+]1ccccc1-c1ccc(NC(=O)c2ccc(C(=O)Nc3ccc(-c4cccc[n+]4C)cc3)cc2)cc1 CHEMBL3230729] SKIPPED [ 6%] 335s testsuite/MDAnalysisTests/converters/test_rdkit.py::TestRDKitFunctions::test_order_independant[Cc1ccc(/C(O)=C(/C([S-])=NCc2ccccc2)[n+]2cccc(CO)c2)cc1[N+](=O)[O-] CHEMBL1596426] SKIPPED [ 6%] 335s testsuite/MDAnalysisTests/converters/test_rdkit.py::TestRDKitFunctions::test_order_independant[CC(C)(O)c1cc2c(cc1C(C)(C)O)-c1ccccc1-2 CHEMBL1990966] SKIPPED [ 6%] 335s testsuite/MDAnalysisTests/converters/test_rdkit.py::TestRDKitFunctions::test_order_independant[[O-]/N=C1/c2ccccc2-c2nc3ccc(C(F)(F)F)cc3nc21 CHEMBL4557878] SKIPPED [ 6%] 335s testsuite/MDAnalysisTests/converters/test_rdkit.py::TestRDKitFunctions::test_order_independant[N#Cc1c[nH]c(C(=O)Nc2ccc(-c3cccc[n+]3[O-])cc2C2=CCCCC2)n1 CHEMBL1172116] SKIPPED [ 6%] 335s testsuite/MDAnalysisTests/converters/test_rdkit.py::TestRDKitFunctions::test_order_independant_issue_3339[C-[N+]#N] SKIPPED [ 6%] 335s testsuite/MDAnalysisTests/converters/test_rdkit.py::TestRDKitFunctions::test_order_independant_issue_3339[C-N=[N+]=[N-]] SKIPPED [ 6%] 335s testsuite/MDAnalysisTests/converters/test_rdkit.py::TestRDKitFunctions::test_order_independant_issue_3339[C-[O+]=C] SKIPPED [ 6%] 335s testsuite/MDAnalysisTests/converters/test_rdkit.py::TestRDKitFunctions::test_order_independant_issue_3339[C-[N+]#[C-]] SKIPPED [ 6%] 335s testsuite/MDAnalysisTests/converters/test_rdkit.py::TestRDKitFunctions::test_warn_conjugated_max_iter SKIPPED [ 6%] 335s testsuite/MDAnalysisTests/converters/test_rdkit.py::TestRDKitFunctions::test_ions[[Li+]] SKIPPED [ 6%] 335s testsuite/MDAnalysisTests/converters/test_rdkit.py::TestRDKitFunctions::test_ions[[Na+]] SKIPPED [ 6%] 335s testsuite/MDAnalysisTests/converters/test_rdkit.py::TestRDKitFunctions::test_ions[[K+]] SKIPPED [ 6%] 335s testsuite/MDAnalysisTests/converters/test_rdkit.py::TestRDKitFunctions::test_ions[[Rb+]] SKIPPED [ 6%] 335s testsuite/MDAnalysisTests/converters/test_rdkit.py::TestRDKitFunctions::test_ions[[Ag+]] SKIPPED [ 6%] 335s testsuite/MDAnalysisTests/converters/test_rdkit.py::TestRDKitFunctions::test_ions[[Cs+]] SKIPPED [ 6%] 335s testsuite/MDAnalysisTests/converters/test_rdkit.py::TestRDKitFunctions::test_ions[[Mg+2]] SKIPPED [ 6%] 335s testsuite/MDAnalysisTests/converters/test_rdkit.py::TestRDKitFunctions::test_ions[[Ca+2]] SKIPPED [ 6%] 335s testsuite/MDAnalysisTests/converters/test_rdkit.py::TestRDKitFunctions::test_ions[[Cu+2]] SKIPPED [ 6%] 335s testsuite/MDAnalysisTests/converters/test_rdkit.py::TestRDKitFunctions::test_ions[[Zn+2]] SKIPPED [ 6%] 335s testsuite/MDAnalysisTests/converters/test_rdkit.py::TestRDKitFunctions::test_ions[[Sr+2]] SKIPPED [ 6%] 335s testsuite/MDAnalysisTests/converters/test_rdkit.py::TestRDKitFunctions::test_ions[[Ba+2]] SKIPPED [ 6%] 335s testsuite/MDAnalysisTests/converters/test_rdkit.py::TestRDKitFunctions::test_ions[[Al+3]] SKIPPED [ 6%] 335s testsuite/MDAnalysisTests/converters/test_rdkit.py::TestRDKitFunctions::test_ions[[Fe+2]] SKIPPED [ 6%] 335s testsuite/MDAnalysisTests/converters/test_rdkit.py::TestRDKitFunctions::test_ions[[Cl-]] SKIPPED [ 7%] 335s testsuite/MDAnalysisTests/converters/test_rdkit.py::TestRDKitFunctions::test_ions[[O-2]] SKIPPED [ 7%] 335s testsuite/MDAnalysisTests/converters/test_rdkit.py::TestRDKitFunctions::test_ions[[Na+].[Cl-]] SKIPPED [ 7%] 335s testsuite/MDAnalysisTests/converters/test_rdkit.py::TestRDKitFunctions::test_reorder_atoms[O=C([C@H](CC1=C[NH1+]=CN1)[NH3+])[O-]] SKIPPED [ 7%] 335s testsuite/MDAnalysisTests/converters/test_rdkit.py::TestRDKitFunctions::test_reorder_atoms[O=S(C)(C)=NC] SKIPPED [ 7%] 335s testsuite/MDAnalysisTests/converters/test_rdkit.py::TestRDKitFunctions::test_pdb_names SKIPPED [ 7%] 335s testsuite/MDAnalysisTests/converters/test_rdkit.py::TestRDKitFunctions::test_bond_stereo_not_stereoany[F/C(Br)=C(Cl)/I] SKIPPED [ 7%] 335s testsuite/MDAnalysisTests/converters/test_rdkit.py::TestRDKitFunctions::test_bond_stereo_not_stereoany[F\\C(Br)=C(Cl)\\I] SKIPPED [ 7%] 335s testsuite/MDAnalysisTests/converters/test_rdkit.py::TestRDKitFunctions::test_bond_stereo_not_stereoany[F-C(Br)=C(Cl)-I] SKIPPED [ 7%] 335s testsuite/MDAnalysisTests/converters/test_rdkit.py::TestRDKitFunctions::test_atom_sorter SKIPPED [ 7%] 335s testsuite/MDAnalysisTests/coordinates/test_amber_inpcrd.py::TestINPCRDReader::test_reader PASSED [ 7%] 335s testsuite/MDAnalysisTests/coordinates/test_amber_inpcrd.py::TestINPCRDReader::test_universe_inpcrd PASSED [ 7%] 335s testsuite/MDAnalysisTests/coordinates/test_amber_inpcrd.py::TestINPCRDReader::test_universe_restrt PASSED [ 7%] 335s testsuite/MDAnalysisTests/coordinates/test_chainreader.py::TestChainReader::test_regular_repr PASSED [ 7%] 336s testsuite/MDAnalysisTests/coordinates/test_chainreader.py::TestChainReader::test_truncated_repr PASSED [ 7%] 336s testsuite/MDAnalysisTests/coordinates/test_chainreader.py::TestChainReader::test_next_trajectory PASSED [ 7%] 336s testsuite/MDAnalysisTests/coordinates/test_chainreader.py::TestChainReader::test_n_atoms PASSED [ 7%] 336s testsuite/MDAnalysisTests/coordinates/test_chainreader.py::TestChainReader::test_n_frames PASSED [ 7%] 336s testsuite/MDAnalysisTests/coordinates/test_chainreader.py::TestChainReader::test_jump_lastframe_trajectory PASSED [ 7%] 336s testsuite/MDAnalysisTests/coordinates/test_chainreader.py::TestChainReader::test_slice_trajectory PASSED [ 7%] 337s testsuite/MDAnalysisTests/coordinates/test_chainreader.py::TestChainReader::test_full_slice PASSED [ 7%] 337s testsuite/MDAnalysisTests/coordinates/test_chainreader.py::TestChainReader::test_frame_numbering PASSED [ 7%] 337s testsuite/MDAnalysisTests/coordinates/test_chainreader.py::TestChainReader::test_next_after_frame_numbering PASSED [ 7%] 337s testsuite/MDAnalysisTests/coordinates/test_chainreader.py::TestChainReader::test_frame PASSED [ 7%] 337s testsuite/MDAnalysisTests/coordinates/test_chainreader.py::TestChainReader::test_write_dcd PASSED [ 7%] 339s testsuite/MDAnalysisTests/coordinates/test_chainreader.py::TestChainReader::test_transform_iteration PASSED [ 7%] 339s testsuite/MDAnalysisTests/coordinates/test_chainreader.py::TestChainReader::test_transform_slice PASSED [ 7%] 339s testsuite/MDAnalysisTests/coordinates/test_chainreader.py::TestChainReader::test_transform_switch PASSED [ 7%] 340s testsuite/MDAnalysisTests/coordinates/test_chainreader.py::TestChainReader::test_transfrom_rewind PASSED [ 7%] 341s testsuite/MDAnalysisTests/coordinates/test_chainreader.py::TestChainReaderFormats::test_set_all_format_tuples PASSED [ 7%] 341s testsuite/MDAnalysisTests/coordinates/test_chainreader.py::TestChainReaderFormats::test_set_all_format_lammps PASSED [ 7%] 343s testsuite/MDAnalysisTests/coordinates/test_chainreader.py::TestChainReaderFormats::test_set_format_tuples_and_format PASSED [ 7%] 343s testsuite/MDAnalysisTests/coordinates/test_chainreader.py::TestChainReaderFormats::test_set_one_format_tuple PASSED [ 7%] 344s testsuite/MDAnalysisTests/coordinates/test_chainreader.py::TestChainReaderFormats::test_set_all_formats PASSED [ 7%] 345s testsuite/MDAnalysisTests/coordinates/test_chainreader.py::TestChainReaderContinuous::test_order[seq_info0-xtc] PASSED [ 7%] 345s testsuite/MDAnalysisTests/coordinates/test_chainreader.py::TestChainReaderContinuous::test_order[seq_info0-trr] PASSED [ 7%] 345s testsuite/MDAnalysisTests/coordinates/test_chainreader.py::TestChainReaderContinuous::test_order[seq_info1-xtc] PASSED [ 7%] 345s testsuite/MDAnalysisTests/coordinates/test_chainreader.py::TestChainReaderContinuous::test_order[seq_info1-trr] PASSED [ 7%] 345s testsuite/MDAnalysisTests/coordinates/test_chainreader.py::TestChainReaderContinuous::test_order[seq_info2-xtc] PASSED [ 7%] 345s testsuite/MDAnalysisTests/coordinates/test_chainreader.py::TestChainReaderContinuous::test_order[seq_info2-trr] PASSED [ 7%] 345s testsuite/MDAnalysisTests/coordinates/test_chainreader.py::TestChainReaderContinuous::test_order[seq_info3-xtc] PASSED [ 7%] 345s testsuite/MDAnalysisTests/coordinates/test_chainreader.py::TestChainReaderContinuous::test_order[seq_info3-trr] PASSED [ 7%] 345s testsuite/MDAnalysisTests/coordinates/test_chainreader.py::TestChainReaderContinuous::test_order[seq_info4-xtc] PASSED [ 7%] 345s testsuite/MDAnalysisTests/coordinates/test_chainreader.py::TestChainReaderContinuous::test_order[seq_info4-trr] PASSED [ 7%] 345s testsuite/MDAnalysisTests/coordinates/test_chainreader.py::TestChainReaderContinuous::test_order[seq_info5-xtc] PASSED [ 7%] 345s testsuite/MDAnalysisTests/coordinates/test_chainreader.py::TestChainReaderContinuous::test_order[seq_info5-trr] PASSED [ 7%] 345s testsuite/MDAnalysisTests/coordinates/test_chainreader.py::TestChainReaderContinuous::test_order[seq_info6-xtc] PASSED [ 7%] 345s testsuite/MDAnalysisTests/coordinates/test_chainreader.py::TestChainReaderContinuous::test_order[seq_info6-trr] PASSED [ 7%] 345s testsuite/MDAnalysisTests/coordinates/test_chainreader.py::TestChainReaderContinuous::test_order[seq_info7-xtc] PASSED [ 7%] 345s testsuite/MDAnalysisTests/coordinates/test_chainreader.py::TestChainReaderContinuous::test_order[seq_info7-trr] PASSED [ 7%] 345s testsuite/MDAnalysisTests/coordinates/test_chainreader.py::TestChainReaderContinuous::test_start_frames PASSED [ 7%] 345s testsuite/MDAnalysisTests/coordinates/test_chainreader.py::TestChainReaderContinuous::test_missing PASSED [ 7%] 345s testsuite/MDAnalysisTests/coordinates/test_chainreader.py::TestChainReaderContinuous::test_warning PASSED [ 7%] 345s testsuite/MDAnalysisTests/coordinates/test_chainreader.py::TestChainReaderContinuous::test_interleaving_error PASSED [ 7%] 345s testsuite/MDAnalysisTests/coordinates/test_chainreader.py::TestChainReaderContinuous::test_easy_trigger_warning PASSED [ 7%] 345s testsuite/MDAnalysisTests/coordinates/test_chainreader.py::TestChainReaderContinuous::test_single_frames PASSED [ 7%] 345s testsuite/MDAnalysisTests/coordinates/test_chainreader.py::TestChainReaderContinuous::test_mixed_filetypes PASSED [ 7%] 346s testsuite/MDAnalysisTests/coordinates/test_chainreader.py::TestChainReaderContinuous::test_unsupported_filetypes PASSED [ 7%] 346s testsuite/MDAnalysisTests/coordinates/test_chainreader.py::test_multilevel_arg_sort[l0-ref0] PASSED [ 7%] 346s testsuite/MDAnalysisTests/coordinates/test_chainreader.py::test_multilevel_arg_sort[l1-ref1] PASSED [ 7%] 346s testsuite/MDAnalysisTests/coordinates/test_chainreader.py::test_multilevel_arg_sort[l2-ref2] PASSED [ 7%] 346s testsuite/MDAnalysisTests/coordinates/test_chainreader.py::test_multilevel_arg_sort[l3-ref3] PASSED [ 7%] 346s testsuite/MDAnalysisTests/coordinates/test_chainreader.py::test_multilevel_arg_sort[l4-ref4] PASSED [ 7%] 346s testsuite/MDAnalysisTests/coordinates/test_chainreader.py::test_filter_times[l0-ref0] PASSED [ 7%] 346s testsuite/MDAnalysisTests/coordinates/test_chainreader.py::test_filter_times[l1-ref1] PASSED [ 7%] 346s testsuite/MDAnalysisTests/coordinates/test_chainreader.py::test_filter_times[l2-ref2] PASSED [ 7%] 346s testsuite/MDAnalysisTests/coordinates/test_chainreader.py::test_filter_times[l3-ref3] PASSED [ 7%] 346s testsuite/MDAnalysisTests/coordinates/test_chainreader.py::test_filter_times[l4-ref4] PASSED [ 7%] 346s testsuite/MDAnalysisTests/coordinates/test_chainreader.py::test_filter_times[l5-ref5] PASSED [ 7%] 346s testsuite/MDAnalysisTests/coordinates/test_chainreader.py::test_filter_times[l6-ref6] PASSED [ 7%] 346s testsuite/MDAnalysisTests/coordinates/test_chainreader.py::test_filter_times[l7-ref7] PASSED [ 7%] 346s testsuite/MDAnalysisTests/coordinates/test_chainreader.py::test_filter_times[l8-ref8] PASSED [ 7%] 346s testsuite/MDAnalysisTests/coordinates/test_chainreader.py::test_filter_times[l9-ref9] PASSED [ 7%] 346s testsuite/MDAnalysisTests/coordinates/test_chainreader.py::test_filter_times[l10-ref10] PASSED [ 7%] 346s testsuite/MDAnalysisTests/coordinates/test_chainreader.py::test_filter_times[l11-ref11] PASSED [ 7%] 346s testsuite/MDAnalysisTests/coordinates/test_chainreader.py::test_filter_times[l12-ref12] PASSED [ 7%] 346s testsuite/MDAnalysisTests/coordinates/test_chainreader.py::test_filter_times[l13-ref13] PASSED [ 7%] 346s testsuite/MDAnalysisTests/coordinates/test_chainreader.py::test_filter_times[l14-ref14] PASSED [ 7%] 346s testsuite/MDAnalysisTests/coordinates/test_chainreader.py::test_issue_4008 PASSED [ 7%] 346s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_reader_n_atoms[ref_reader0] PASSED [ 7%] 346s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_reader_n_atoms[ref_reader1] PASSED [ 7%] 346s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_reader_n_atoms[ref_reader2] PASSED [ 7%] 346s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_reader_n_atoms[ref_reader3] PASSED [ 7%] 346s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_reader_n_atoms[ref_reader4] PASSED [ 7%] 346s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_reader_n_atoms[ref_reader5] PASSED [ 7%] 346s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_reader_n_atoms[ref_reader6] PASSED [ 7%] 346s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_reader_n_atoms[ref_reader7] PASSED [ 7%] 346s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_reader_n_atoms[ref_reader8] PASSED [ 7%] 346s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_reader_n_atoms[ref_reader9] PASSED [ 7%] 346s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_reader_n_atoms[ref_reader10] PASSED [ 7%] 346s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_reader_n_atoms[ref_reader11] PASSED [ 7%] 346s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_reader_n_atoms[ref_reader12] PASSED [ 7%] 346s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_reader_n_atoms[ref_reader13] PASSED [ 7%] 347s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_reader_n_atoms[ref_reader14] PASSED [ 7%] 347s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_reader_n_atoms[ref_reader15] PASSED [ 7%] 347s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_reader_n_atoms[ref_reader16] PASSED [ 7%] 347s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_reader_n_atoms[ref_reader17] PASSED [ 7%] 347s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_reader_n_atoms[ref_reader18] PASSED [ 7%] 347s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_reader_n_atoms[ref_reader19] PASSED [ 7%] 347s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_reader_n_atoms[ref_reader20] PASSED [ 7%] 347s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_reader_n_atoms[ref_reader21] PASSED [ 7%] 348s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_reader_n_atoms[ref_reader22] PASSED [ 7%] 348s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_reader_n_atoms[ref_reader23] PASSED [ 7%] 348s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_reader_n_atoms[ref_reader24] SKIPPED [ 7%] 348s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_reader_n_atoms[ref_reader26] PASSED [ 7%] 348s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_reader_filename[ref_reader0] PASSED [ 7%] 348s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_reader_filename[ref_reader1] PASSED [ 7%] 348s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_reader_filename[ref_reader2] PASSED [ 7%] 348s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_reader_filename[ref_reader3] PASSED [ 7%] 348s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_reader_filename[ref_reader4] PASSED [ 7%] 348s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_reader_filename[ref_reader5] PASSED [ 7%] 348s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_reader_filename[ref_reader6] PASSED [ 7%] 348s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_reader_filename[ref_reader7] PASSED [ 7%] 348s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_reader_filename[ref_reader8] PASSED [ 7%] 348s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_reader_filename[ref_reader9] PASSED [ 7%] 348s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_reader_filename[ref_reader10] PASSED [ 7%] 348s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_reader_filename[ref_reader11] PASSED [ 7%] 348s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_reader_filename[ref_reader12] PASSED [ 7%] 348s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_reader_filename[ref_reader13] PASSED [ 7%] 348s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_reader_filename[ref_reader14] PASSED [ 7%] 348s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_reader_filename[ref_reader15] PASSED [ 7%] 348s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_reader_filename[ref_reader16] PASSED [ 7%] 348s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_reader_filename[ref_reader17] PASSED [ 7%] 348s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_reader_filename[ref_reader18] PASSED [ 7%] 348s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_reader_filename[ref_reader19] PASSED [ 7%] 348s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_reader_filename[ref_reader20] PASSED [ 7%] 348s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_reader_filename[ref_reader21] PASSED [ 7%] 350s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_reader_filename[ref_reader22] PASSED [ 7%] 350s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_reader_filename[ref_reader23] PASSED [ 7%] 350s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_reader_filename[ref_reader24] SKIPPED [ 7%] 350s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_reader_filename[ref_reader26] PASSED [ 7%] 350s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_reader_copied_extra_attributes[ref_reader_extra_args0] PASSED [ 7%] 350s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_reader_copied_extra_attributes[ref_reader_extra_args1] PASSED [ 7%] 350s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_reader_copied_extra_attributes[ref_reader_extra_args2] PASSED [ 7%] 350s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_reader_copied_extra_attributes[ref_reader_extra_args3] PASSED [ 7%] 350s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_reader_copied_extra_attributes[ref_reader_extra_args4] PASSED [ 7%] 350s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_reader_copied_extra_attributes[ref_reader_extra_args5] PASSED [ 7%] 350s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_reader_copied_extra_attributes[ref_reader_extra_args6] PASSED [ 7%] 350s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_reader_copied_extra_attributes[ref_reader_extra_args7] PASSED [ 7%] 350s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_reader_copied_extra_attributes[ref_reader_extra_args8] PASSED [ 7%] 350s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_reader_copied_extra_attributes[ref_reader_extra_args9] PASSED [ 7%] 350s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_reader_copied_extra_attributes[ref_reader_extra_args10] PASSED [ 7%] 350s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_reader_copied_extra_attributes[ref_reader_extra_args11] PASSED [ 7%] 350s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_reader_copied_extra_attributes[ref_reader_extra_args12] PASSED [ 7%] 350s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_reader_copied_extra_attributes[ref_reader_extra_args13] PASSED [ 7%] 350s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_reader_copied_extra_attributes[ref_reader_extra_args14] PASSED [ 7%] 350s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_reader_copied_extra_attributes[ref_reader_extra_args15] PASSED [ 7%] 350s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_reader_copied_extra_attributes[ref_reader_extra_args16] PASSED [ 7%] 350s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_reader_copied_extra_attributes[ref_reader_extra_args17] PASSED [ 7%] 350s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_reader_copied_extra_attributes[ref_reader_extra_args18] PASSED [ 7%] 350s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_reader_copied_extra_attributes[ref_reader_extra_args19] PASSED [ 7%] 350s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_reader_copied_extra_attributes[ref_reader_extra_args20] PASSED [ 7%] 350s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_reader_copied_extra_attributes[ref_reader_extra_args21] PASSED [ 7%] 352s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_reader_copied_extra_attributes[ref_reader_extra_args22] PASSED [ 7%] 352s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_reader_copied_extra_attributes[ref_reader_extra_args23] PASSED [ 7%] 352s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_reader_copied_extra_attributes[ref_reader_extra_args24] SKIPPED [ 7%] 352s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_reader_copied_extra_attributes[ref_reader_extra_args26] PASSED [ 7%] 352s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_reader_independent_iteration[ref_reader0] SKIPPED [ 7%] 352s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_reader_independent_iteration[ref_reader1] SKIPPED [ 7%] 352s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_reader_independent_iteration[ref_reader2] PASSED [ 7%] 352s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_reader_independent_iteration[ref_reader3] SKIPPED [ 7%] 352s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_reader_independent_iteration[ref_reader4] SKIPPED [ 7%] 352s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_reader_independent_iteration[ref_reader5] PASSED [ 7%] 352s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_reader_independent_iteration[ref_reader6] SKIPPED [ 7%] 352s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_reader_independent_iteration[ref_reader7] PASSED [ 7%] 352s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_reader_independent_iteration[ref_reader8] SKIPPED [ 7%] 352s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_reader_independent_iteration[ref_reader9] SKIPPED [ 7%] 352s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_reader_independent_iteration[ref_reader10] PASSED [ 7%] 352s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_reader_independent_iteration[ref_reader11] SKIPPED [ 7%] 352s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_reader_independent_iteration[ref_reader12] SKIPPED [ 7%] 352s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_reader_independent_iteration[ref_reader13] SKIPPED [ 7%] 352s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_reader_independent_iteration[ref_reader14] PASSED [ 7%] 352s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_reader_independent_iteration[ref_reader15] PASSED [ 7%] 352s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_reader_independent_iteration[ref_reader16] PASSED [ 7%] 352s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_reader_independent_iteration[ref_reader17] PASSED [ 7%] 352s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_reader_independent_iteration[ref_reader18] SKIPPED [ 7%] 352s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_reader_independent_iteration[ref_reader19] SKIPPED [ 7%] 352s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_reader_independent_iteration[ref_reader20] PASSED [ 7%] 352s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_reader_independent_iteration[ref_reader21] PASSED [ 7%] 354s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_reader_independent_iteration[ref_reader22] PASSED [ 7%] 354s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_reader_independent_iteration[ref_reader23] SKIPPED [ 7%] 354s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_reader_independent_iteration[ref_reader24] SKIPPED [ 7%] 354s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_reader_independent_iteration[ref_reader26] SKIPPED [ 7%] 354s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_reader_initial_frame_maintained[ref_reader0] SKIPPED [ 7%] 354s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_reader_initial_frame_maintained[ref_reader1] SKIPPED [ 8%] 354s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_reader_initial_frame_maintained[ref_reader2] PASSED [ 8%] 354s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_reader_initial_frame_maintained[ref_reader3] SKIPPED [ 8%] 354s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_reader_initial_frame_maintained[ref_reader4] SKIPPED [ 8%] 354s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_reader_initial_frame_maintained[ref_reader5] PASSED [ 8%] 354s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_reader_initial_frame_maintained[ref_reader6] SKIPPED [ 8%] 354s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_reader_initial_frame_maintained[ref_reader7] PASSED [ 8%] 354s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_reader_initial_frame_maintained[ref_reader8] SKIPPED [ 8%] 354s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_reader_initial_frame_maintained[ref_reader9] SKIPPED [ 8%] 354s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_reader_initial_frame_maintained[ref_reader10] PASSED [ 8%] 354s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_reader_initial_frame_maintained[ref_reader11] SKIPPED [ 8%] 354s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_reader_initial_frame_maintained[ref_reader12] SKIPPED [ 8%] 354s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_reader_initial_frame_maintained[ref_reader13] SKIPPED [ 8%] 354s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_reader_initial_frame_maintained[ref_reader14] PASSED [ 8%] 354s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_reader_initial_frame_maintained[ref_reader15] PASSED [ 8%] 354s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_reader_initial_frame_maintained[ref_reader16] PASSED [ 8%] 354s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_reader_initial_frame_maintained[ref_reader17] PASSED [ 8%] 354s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_reader_initial_frame_maintained[ref_reader18] SKIPPED [ 8%] 354s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_reader_initial_frame_maintained[ref_reader19] SKIPPED [ 8%] 354s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_reader_initial_frame_maintained[ref_reader20] PASSED [ 8%] 354s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_reader_initial_frame_maintained[ref_reader21] PASSED [ 8%] 356s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_reader_initial_frame_maintained[ref_reader22] PASSED [ 8%] 356s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_reader_initial_frame_maintained[ref_reader23] SKIPPED [ 8%] 356s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_reader_initial_frame_maintained[ref_reader24] SKIPPED [ 8%] 356s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_reader_initial_frame_maintained[ref_reader26] SKIPPED [ 8%] 356s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_reader_initial_next[ref_reader0] SKIPPED [ 8%] 356s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_reader_initial_next[ref_reader1] SKIPPED [ 8%] 356s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_reader_initial_next[ref_reader2] PASSED [ 8%] 356s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_reader_initial_next[ref_reader3] SKIPPED [ 8%] 356s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_reader_initial_next[ref_reader4] SKIPPED [ 8%] 356s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_reader_initial_next[ref_reader5] PASSED [ 8%] 356s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_reader_initial_next[ref_reader6] SKIPPED [ 8%] 356s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_reader_initial_next[ref_reader7] PASSED [ 8%] 357s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_reader_initial_next[ref_reader8] SKIPPED [ 8%] 357s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_reader_initial_next[ref_reader9] SKIPPED [ 8%] 357s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_reader_initial_next[ref_reader10] PASSED [ 8%] 357s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_reader_initial_next[ref_reader11] SKIPPED [ 8%] 357s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_reader_initial_next[ref_reader12] SKIPPED [ 8%] 357s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_reader_initial_next[ref_reader13] SKIPPED [ 8%] 357s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_reader_initial_next[ref_reader14] PASSED [ 8%] 357s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_reader_initial_next[ref_reader15] PASSED [ 8%] 357s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_reader_initial_next[ref_reader16] PASSED [ 8%] 357s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_reader_initial_next[ref_reader17] PASSED [ 8%] 357s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_reader_initial_next[ref_reader18] SKIPPED [ 8%] 357s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_reader_initial_next[ref_reader19] SKIPPED [ 8%] 357s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_reader_initial_next[ref_reader20] PASSED [ 8%] 357s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_reader_initial_next[ref_reader21] SKIPPED [ 8%] 359s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_reader_initial_next[ref_reader22] PASSED [ 8%] 359s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_reader_initial_next[ref_reader23] SKIPPED [ 8%] 359s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_reader_initial_next[ref_reader24] SKIPPED [ 8%] 359s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_reader_initial_next[ref_reader26] SKIPPED [ 8%] 359s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_positions_share_memory[ref_reader0] PASSED [ 8%] 359s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_positions_share_memory[ref_reader1] PASSED [ 8%] 359s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_positions_share_memory[ref_reader2] PASSED [ 8%] 359s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_positions_share_memory[ref_reader3] PASSED [ 8%] 359s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_positions_share_memory[ref_reader4] PASSED [ 8%] 359s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_positions_share_memory[ref_reader5] PASSED [ 8%] 359s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_positions_share_memory[ref_reader6] PASSED [ 8%] 359s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_positions_share_memory[ref_reader7] PASSED [ 8%] 359s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_positions_share_memory[ref_reader8] PASSED [ 8%] 359s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_positions_share_memory[ref_reader9] PASSED [ 8%] 359s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_positions_share_memory[ref_reader10] PASSED [ 8%] 359s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_positions_share_memory[ref_reader11] PASSED [ 8%] 359s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_positions_share_memory[ref_reader12] PASSED [ 8%] 359s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_positions_share_memory[ref_reader13] PASSED [ 8%] 359s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_positions_share_memory[ref_reader14] PASSED [ 8%] 359s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_positions_share_memory[ref_reader15] PASSED [ 8%] 359s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_positions_share_memory[ref_reader16] PASSED [ 8%] 359s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_positions_share_memory[ref_reader17] PASSED [ 8%] 359s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_positions_share_memory[ref_reader18] PASSED [ 8%] 359s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_positions_share_memory[ref_reader19] PASSED [ 8%] 359s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_positions_share_memory[ref_reader20] PASSED [ 8%] 359s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_positions_share_memory[ref_reader21] PASSED [ 8%] 361s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_positions_share_memory[ref_reader22] PASSED [ 8%] 361s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_positions_share_memory[ref_reader23] PASSED [ 8%] 361s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_positions_share_memory[ref_reader24] SKIPPED [ 8%] 361s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_positions_share_memory[ref_reader26] PASSED [ 8%] 361s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_copy_with_auxiliary_no_pyedr PASSED [ 8%] 361s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_copy_with_auxiliary_pyedr SKIPPED [ 8%] 361s testsuite/MDAnalysisTests/coordinates/test_crd.py::TestCRDWriter::test_write_atoms[test.crd] PASSED [ 8%] 361s testsuite/MDAnalysisTests/coordinates/test_crd.py::TestCRDWriter::test_write_atoms[test.crd.bz2] PASSED [ 8%] 361s testsuite/MDAnalysisTests/coordinates/test_crd.py::TestCRDWriter::test_write_atoms[test.crd.gz] PASSED [ 8%] 361s testsuite/MDAnalysisTests/coordinates/test_crd.py::TestCRDWriter::test_roundtrip PASSED [ 8%] 361s testsuite/MDAnalysisTests/coordinates/test_crd.py::TestCRDWriter::test_write_EXT PASSED [ 8%] 361s testsuite/MDAnalysisTests/coordinates/test_crd.py::TestCRDWriter::test_write_EXT_read PASSED [ 8%] 361s testsuite/MDAnalysisTests/coordinates/test_crd.py::TestCRDWriterMissingAttrs::test_warns[resnames] PASSED [ 8%] 361s testsuite/MDAnalysisTests/coordinates/test_crd.py::TestCRDWriterMissingAttrs::test_warns[resids] PASSED [ 8%] 361s testsuite/MDAnalysisTests/coordinates/test_crd.py::TestCRDWriterMissingAttrs::test_warns[names] PASSED [ 8%] 361s testsuite/MDAnalysisTests/coordinates/test_crd.py::TestCRDWriterMissingAttrs::test_warns[tempfactors] PASSED [ 8%] 361s testsuite/MDAnalysisTests/coordinates/test_crd.py::TestCRDWriterMissingAttrs::test_write[resnames] PASSED [ 8%] 361s testsuite/MDAnalysisTests/coordinates/test_crd.py::TestCRDWriterMissingAttrs::test_write[resids] PASSED [ 8%] 361s testsuite/MDAnalysisTests/coordinates/test_crd.py::TestCRDWriterMissingAttrs::test_write[names] PASSED [ 8%] 361s testsuite/MDAnalysisTests/coordinates/test_crd.py::TestCRDWriterMissingAttrs::test_write[tempfactors] PASSED [ 8%] 361s testsuite/MDAnalysisTests/coordinates/test_dcd.py::TestDCDReader::test_n_atoms PASSED [ 8%] 361s testsuite/MDAnalysisTests/coordinates/test_dcd.py::TestDCDReader::test_n_frames PASSED [ 8%] 361s testsuite/MDAnalysisTests/coordinates/test_dcd.py::TestDCDReader::test_first_frame PASSED [ 8%] 361s testsuite/MDAnalysisTests/coordinates/test_dcd.py::TestDCDReader::test_double_close PASSED [ 8%] 361s testsuite/MDAnalysisTests/coordinates/test_dcd.py::TestDCDReader::test_get_writer_1 PASSED [ 8%] 361s testsuite/MDAnalysisTests/coordinates/test_dcd.py::TestDCDReader::test_get_writer_2 PASSED [ 8%] 361s testsuite/MDAnalysisTests/coordinates/test_dcd.py::TestDCDReader::test_ts_dt_matches_reader PASSED [ 8%] 361s testsuite/MDAnalysisTests/coordinates/test_dcd.py::TestDCDReader::test_first_dimensions PASSED [ 8%] 361s testsuite/MDAnalysisTests/coordinates/test_dcd.py::TestDCDReader::test_changing_dimensions PASSED [ 8%] 361s testsuite/MDAnalysisTests/coordinates/test_dcd.py::TestDCDReader::test_volume PASSED [ 8%] 361s testsuite/MDAnalysisTests/coordinates/test_dcd.py::TestDCDReader::test_add_same_auxname_raises_ValueError PASSED [ 8%] 361s testsuite/MDAnalysisTests/coordinates/test_dcd.py::TestDCDReader::test_remove_auxiliary PASSED [ 8%] 361s testsuite/MDAnalysisTests/coordinates/test_dcd.py::TestDCDReader::test_remove_nonexistant_auxiliary_raises_ValueError PASSED [ 8%] 361s testsuite/MDAnalysisTests/coordinates/test_dcd.py::TestDCDReader::test_get_aux_attribute PASSED [ 8%] 361s testsuite/MDAnalysisTests/coordinates/test_dcd.py::TestDCDReader::test_reload_auxiliaries_from_description PASSED [ 8%] 361s testsuite/MDAnalysisTests/coordinates/test_dcd.py::TestDCDReader::test_stop_iter PASSED [ 8%] 361s testsuite/MDAnalysisTests/coordinates/test_dcd.py::TestDCDReader::test_transformations_iter PASSED [ 8%] 361s testsuite/MDAnalysisTests/coordinates/test_dcd.py::TestDCDReader::test_transformations_2iter PASSED [ 8%] 361s testsuite/MDAnalysisTests/coordinates/test_dcd.py::TestDCDReader::test_transformations_slice PASSED [ 8%] 361s testsuite/MDAnalysisTests/coordinates/test_dcd.py::TestDCDReader::test_transformations_switch_frame PASSED [ 8%] 361s testsuite/MDAnalysisTests/coordinates/test_dcd.py::TestDCDReader::test_transformation_rewind PASSED [ 8%] 361s testsuite/MDAnalysisTests/coordinates/test_dcd.py::TestDCDReader::test_transformations_copy PASSED [ 8%] 361s testsuite/MDAnalysisTests/coordinates/test_dcd.py::TestDCDReader::test_add_another_transformations_raises_ValueError PASSED [ 8%] 361s testsuite/MDAnalysisTests/coordinates/test_dcd.py::TestDCDReader::test_pickle_reader PASSED [ 8%] 361s testsuite/MDAnalysisTests/coordinates/test_dcd.py::TestDCDReader::test_frame_collect_all_same XFAIL [ 8%] 361s testsuite/MDAnalysisTests/coordinates/test_dcd.py::TestDCDReader::test_go_over_last_frame PASSED [ 8%] 361s testsuite/MDAnalysisTests/coordinates/test_dcd.py::TestDCDReader::test_reopen PASSED [ 8%] 361s testsuite/MDAnalysisTests/coordinates/test_dcd.py::TestDCDReader::test_pickle_next_ts_reader PASSED [ 8%] 361s testsuite/MDAnalysisTests/coordinates/test_dcd.py::TestDCDReader::test_pickle_last_ts_reader PASSED [ 8%] 362s testsuite/MDAnalysisTests/coordinates/test_dcd.py::TestDCDReader::test_empty_dcd PASSED [ 8%] 362s testsuite/MDAnalysisTests/coordinates/test_dcd.py::TestDCDReader::test_with_statement PASSED [ 8%] 362s testsuite/MDAnalysisTests/coordinates/test_dcd.py::TestDCDWriter::test_write_different_box PASSED [ 8%] 362s testsuite/MDAnalysisTests/coordinates/test_dcd.py::TestDCDWriter::test_write_selection PASSED [ 8%] 362s testsuite/MDAnalysisTests/coordinates/test_dcd.py::TestDCDWriter::test_write_none PASSED [ 8%] 362s testsuite/MDAnalysisTests/coordinates/test_dcd.py::TestDCDWriter::test_no_container PASSED [ 8%] 362s testsuite/MDAnalysisTests/coordinates/test_dcd.py::TestDCDWriter::test_write_not_changing_ts PASSED [ 8%] 362s testsuite/MDAnalysisTests/coordinates/test_dcd.py::test_write_random_unitcell PASSED [ 8%] 362s testsuite/MDAnalysisTests/coordinates/test_dcd.py::test_empty_dimension_warning PASSED [ 8%] 362s testsuite/MDAnalysisTests/coordinates/test_dcd.py::test_rewind PASSED [ 8%] 362s testsuite/MDAnalysisTests/coordinates/test_dcd.py::test_next PASSED [ 8%] 362s testsuite/MDAnalysisTests/coordinates/test_dcd.py::test_jump_last_frame PASSED [ 8%] 362s testsuite/MDAnalysisTests/coordinates/test_dcd.py::test_slice[5-17-3] PASSED [ 8%] 362s testsuite/MDAnalysisTests/coordinates/test_dcd.py::test_slice[20-5--1] PASSED [ 8%] 362s testsuite/MDAnalysisTests/coordinates/test_dcd.py::test_array_like[list] PASSED [ 8%] 362s testsuite/MDAnalysisTests/coordinates/test_dcd.py::test_array_like[array] PASSED [ 8%] 362s testsuite/MDAnalysisTests/coordinates/test_dcd.py::test_list_indices[indices0] PASSED [ 8%] 362s testsuite/MDAnalysisTests/coordinates/test_dcd.py::test_list_indices[indices1] PASSED [ 8%] 362s testsuite/MDAnalysisTests/coordinates/test_dcd.py::test_reader_set_dt PASSED [ 8%] 362s testsuite/MDAnalysisTests/coordinates/test_dcd.py::test_writer_dt[dcd-4] PASSED [ 8%] 362s testsuite/MDAnalysisTests/coordinates/test_dcd.py::test_writer_dt[xtc-3] PASSED [ 8%] 362s testsuite/MDAnalysisTests/coordinates/test_dcd.py::test_DCDWriter_default[istart-0] PASSED [ 8%] 362s testsuite/MDAnalysisTests/coordinates/test_dcd.py::test_DCDWriter_default[nsavc-1] PASSED [ 8%] 362s testsuite/MDAnalysisTests/coordinates/test_dcd.py::test_other_writer[dcd-5] PASSED [ 8%] 363s testsuite/MDAnalysisTests/coordinates/test_dcd.py::test_other_writer[xtc-2] PASSED [ 8%] 363s testsuite/MDAnalysisTests/coordinates/test_dcd.py::test_single_frame PASSED [ 8%] 363s testsuite/MDAnalysisTests/coordinates/test_dcd.py::test_write_no_natoms PASSED [ 8%] 363s testsuite/MDAnalysisTests/coordinates/test_dcd.py::test_writer_trajectory_no_natoms PASSED [ 8%] 363s testsuite/MDAnalysisTests/coordinates/test_dcd.py::test_read_unitcell_triclinic[RefCHARMMtriclinicDCD] PASSED [ 8%] 363s testsuite/MDAnalysisTests/coordinates/test_dcd.py::test_read_unitcell_triclinic[RefNAMDtriclinicDCD] PASSED [ 8%] 363s testsuite/MDAnalysisTests/coordinates/test_dcd.py::test_write_unitcell_triclinic[RefCHARMMtriclinicDCD] PASSED [ 8%] 363s testsuite/MDAnalysisTests/coordinates/test_dcd.py::test_write_unitcell_triclinic[RefNAMDtriclinicDCD] PASSED [ 8%] 363s testsuite/MDAnalysisTests/coordinates/test_dcd.py::test_ncdf2dcd_unitcell PASSED [ 8%] 363s testsuite/MDAnalysisTests/coordinates/test_dcd.py::test_ncdf2dcd_coords PASSED [ 8%] 363s testsuite/MDAnalysisTests/coordinates/test_dcd.py::test_ts_time[universe0] PASSED [ 8%] 363s testsuite/MDAnalysisTests/coordinates/test_dcd.py::test_ts_time[universe1] PASSED [ 8%] 363s testsuite/MDAnalysisTests/coordinates/test_dcd.py::test_ts_time[universe2] PASSED [ 8%] 363s testsuite/MDAnalysisTests/coordinates/test_dcd.py::test_ts_time[universe3] PASSED [ 8%] 363s testsuite/MDAnalysisTests/coordinates/test_dcd.py::test_pathlib PASSED [ 8%] 363s testsuite/MDAnalysisTests/coordinates/test_dcd.py::test_large_dcdfile SKIPPED [ 8%] 363s testsuite/MDAnalysisTests/coordinates/test_dlpoly.py::TestConfigReader::test_read_unitcell PASSED [ 8%] 363s testsuite/MDAnalysisTests/coordinates/test_dlpoly.py::TestConfigReader::test_positions PASSED [ 8%] 363s testsuite/MDAnalysisTests/coordinates/test_dlpoly.py::TestConfigReader::test_velocities PASSED [ 8%] 363s testsuite/MDAnalysisTests/coordinates/test_dlpoly.py::TestConfigReader::test_forces PASSED [ 8%] 363s testsuite/MDAnalysisTests/coordinates/test_dlpoly.py::TestConfigReader::test_read PASSED [ 8%] 363s testsuite/MDAnalysisTests/coordinates/test_dlpoly.py::TestConfigOrder::test_read_unitcell PASSED [ 8%] 363s testsuite/MDAnalysisTests/coordinates/test_dlpoly.py::TestConfigOrder::test_positions PASSED [ 8%] 363s testsuite/MDAnalysisTests/coordinates/test_dlpoly.py::TestConfigOrder::test_velocities PASSED [ 8%] 363s testsuite/MDAnalysisTests/coordinates/test_dlpoly.py::TestConfigOrder::test_forces PASSED [ 8%] 363s testsuite/MDAnalysisTests/coordinates/test_dlpoly.py::TestConfigMinimal::test_positions PASSED [ 8%] 363s testsuite/MDAnalysisTests/coordinates/test_dlpoly.py::TestConfigMinimal::test_read_unitcell PASSED [ 8%] 363s testsuite/MDAnalysisTests/coordinates/test_dlpoly.py::TestConfigMinimal::test_velocities PASSED [ 8%] 363s testsuite/MDAnalysisTests/coordinates/test_dlpoly.py::TestConfigMinimal::test_forces PASSED [ 8%] 363s testsuite/MDAnalysisTests/coordinates/test_dlpoly.py::TestConfigReader2::test_names PASSED [ 8%] 363s testsuite/MDAnalysisTests/coordinates/test_dlpoly.py::TestConfigReader2::test_pos PASSED [ 8%] 363s testsuite/MDAnalysisTests/coordinates/test_dlpoly.py::TestConfigReader2::test_vel PASSED [ 8%] 363s testsuite/MDAnalysisTests/coordinates/test_dlpoly.py::TestConfigReader2::test_for PASSED [ 8%] 363s testsuite/MDAnalysisTests/coordinates/test_dlpoly.py::TestConfigReader2::test_number PASSED [ 8%] 363s testsuite/MDAnalysisTests/coordinates/test_dlpoly.py::TestConfigReaderMinimal2::test_names PASSED [ 8%] 363s testsuite/MDAnalysisTests/coordinates/test_dlpoly.py::TestConfigReaderMinimal2::test_pos PASSED [ 8%] 363s testsuite/MDAnalysisTests/coordinates/test_dlpoly.py::TestConfigReaderMinimal2::test_number PASSED [ 8%] 363s testsuite/MDAnalysisTests/coordinates/test_dlpoly.py::TestConfigReaderMinimal2::test_vel PASSED [ 8%] 363s testsuite/MDAnalysisTests/coordinates/test_dlpoly.py::TestConfigReaderMinimal2::test_for PASSED [ 8%] 363s testsuite/MDAnalysisTests/coordinates/test_dlpoly.py::TestDLPolyHistory::test_len PASSED [ 9%] 363s testsuite/MDAnalysisTests/coordinates/test_dlpoly.py::TestDLPolyHistory::test_getting PASSED [ 9%] 363s testsuite/MDAnalysisTests/coordinates/test_dlpoly.py::TestDLPolyHistory::test_slicing PASSED [ 9%] 363s testsuite/MDAnalysisTests/coordinates/test_dlpoly.py::TestDLPolyHistory::test_slicing_2 PASSED [ 9%] 363s testsuite/MDAnalysisTests/coordinates/test_dlpoly.py::TestDLPolyHistory::test_position PASSED [ 9%] 363s testsuite/MDAnalysisTests/coordinates/test_dlpoly.py::TestDLPolyHistory::test_velocity PASSED [ 9%] 363s testsuite/MDAnalysisTests/coordinates/test_dlpoly.py::TestDLPolyHistory::test_force PASSED [ 9%] 363s testsuite/MDAnalysisTests/coordinates/test_dlpoly.py::TestDLPolyHistory::test_unitcell PASSED [ 9%] 363s testsuite/MDAnalysisTests/coordinates/test_dlpoly.py::TestDLPolyHistoryOrder::test_len PASSED [ 9%] 363s testsuite/MDAnalysisTests/coordinates/test_dlpoly.py::TestDLPolyHistoryOrder::test_getting PASSED [ 9%] 363s testsuite/MDAnalysisTests/coordinates/test_dlpoly.py::TestDLPolyHistoryOrder::test_slicing PASSED [ 9%] 363s testsuite/MDAnalysisTests/coordinates/test_dlpoly.py::TestDLPolyHistoryOrder::test_slicing_2 PASSED [ 9%] 363s testsuite/MDAnalysisTests/coordinates/test_dlpoly.py::TestDLPolyHistoryOrder::test_position PASSED [ 9%] 363s testsuite/MDAnalysisTests/coordinates/test_dlpoly.py::TestDLPolyHistoryOrder::test_velocity PASSED [ 9%] 363s testsuite/MDAnalysisTests/coordinates/test_dlpoly.py::TestDLPolyHistoryOrder::test_force PASSED [ 9%] 363s testsuite/MDAnalysisTests/coordinates/test_dlpoly.py::TestDLPolyHistoryOrder::test_unitcell PASSED [ 9%] 363s testsuite/MDAnalysisTests/coordinates/test_dlpoly.py::TestDLPolyHistoryMinimal::test_len PASSED [ 9%] 363s testsuite/MDAnalysisTests/coordinates/test_dlpoly.py::TestDLPolyHistoryMinimal::test_getting PASSED [ 9%] 363s testsuite/MDAnalysisTests/coordinates/test_dlpoly.py::TestDLPolyHistoryMinimal::test_slicing PASSED [ 9%] 363s testsuite/MDAnalysisTests/coordinates/test_dlpoly.py::TestDLPolyHistoryMinimal::test_slicing_2 PASSED [ 9%] 363s testsuite/MDAnalysisTests/coordinates/test_dlpoly.py::TestDLPolyHistoryMinimal::test_position PASSED [ 9%] 363s testsuite/MDAnalysisTests/coordinates/test_dlpoly.py::TestDLPolyHistoryMinimal::test_velocity PASSED [ 9%] 363s testsuite/MDAnalysisTests/coordinates/test_dlpoly.py::TestDLPolyHistoryMinimal::test_force PASSED [ 9%] 363s testsuite/MDAnalysisTests/coordinates/test_dlpoly.py::TestDLPolyHistoryMinimal::test_unitcell PASSED [ 9%] 363s testsuite/MDAnalysisTests/coordinates/test_dlpoly.py::TestDLPolyHistoryMinimalCell::test_len PASSED [ 9%] 363s testsuite/MDAnalysisTests/coordinates/test_dlpoly.py::TestDLPolyHistoryMinimalCell::test_getting PASSED [ 9%] 363s testsuite/MDAnalysisTests/coordinates/test_dlpoly.py::TestDLPolyHistoryMinimalCell::test_slicing PASSED [ 9%] 363s testsuite/MDAnalysisTests/coordinates/test_dlpoly.py::TestDLPolyHistoryMinimalCell::test_slicing_2 PASSED [ 9%] 363s testsuite/MDAnalysisTests/coordinates/test_dlpoly.py::TestDLPolyHistoryMinimalCell::test_position PASSED [ 9%] 363s testsuite/MDAnalysisTests/coordinates/test_dlpoly.py::TestDLPolyHistoryMinimalCell::test_unitcell PASSED [ 9%] 363s testsuite/MDAnalysisTests/coordinates/test_dlpoly.py::TestDLPolyHistoryMinimalCell::test_velocity PASSED [ 9%] 363s testsuite/MDAnalysisTests/coordinates/test_dlpoly.py::TestDLPolyHistoryMinimalCell::test_force PASSED [ 9%] 363s testsuite/MDAnalysisTests/coordinates/test_dms.py::TestDMSReader::test_global_cell PASSED [ 9%] 363s testsuite/MDAnalysisTests/coordinates/test_dms.py::TestDMSReader::test_velocities PASSED [ 9%] 363s testsuite/MDAnalysisTests/coordinates/test_dms.py::TestDMSReader::test_number_of_coords PASSED [ 9%] 363s testsuite/MDAnalysisTests/coordinates/test_dms.py::TestDMSReader::test_coords_atom_0 PASSED [ 9%] 364s testsuite/MDAnalysisTests/coordinates/test_dms.py::TestDMSReader::test_n_frames PASSED [ 9%] 364s testsuite/MDAnalysisTests/coordinates/test_dms.py::TestDMSReader::test_frame PASSED [ 9%] 364s testsuite/MDAnalysisTests/coordinates/test_dms.py::TestDMSReader::test_frame_index_0 PASSED [ 9%] 364s testsuite/MDAnalysisTests/coordinates/test_dms.py::TestDMSReader::test_frame_index_1_raises_IndexError PASSED [ 9%] 364s testsuite/MDAnalysisTests/coordinates/test_fhiaims.py::TestFHIAIMSReader::test_single_file PASSED [ 9%] 364s testsuite/MDAnalysisTests/coordinates/test_fhiaims.py::TestFHIAIMSReader::test_uses_FHIAIMSReader PASSED [ 9%] 364s testsuite/MDAnalysisTests/coordinates/test_fhiaims.py::TestFHIAIMSReader::test_dimensions PASSED [ 9%] 364s testsuite/MDAnalysisTests/coordinates/test_fhiaims.py::TestFHIAIMSReader::test_n_atoms PASSED [ 9%] 364s testsuite/MDAnalysisTests/coordinates/test_fhiaims.py::TestFHIAIMSReader::test_fhiaims_positions PASSED [ 9%] 364s testsuite/MDAnalysisTests/coordinates/test_fhiaims.py::TestFHIAIMSReader::test_n_frames PASSED [ 9%] 364s testsuite/MDAnalysisTests/coordinates/test_fhiaims.py::TestFHIAIMSReader::test_bad_input_missing_periodicity PASSED [ 9%] 364s testsuite/MDAnalysisTests/coordinates/test_fhiaims.py::TestFHIAIMSReader::test_bad_input_relative_positions_no_box PASSED [ 9%] 364s testsuite/MDAnalysisTests/coordinates/test_fhiaims.py::TestFHIAIMSReader::test_bad_input_missing_velocity PASSED [ 9%] 364s testsuite/MDAnalysisTests/coordinates/test_fhiaims.py::TestFHIAIMSReader::test_bad_input_velocity_wrong_position PASSED [ 9%] 364s testsuite/MDAnalysisTests/coordinates/test_fhiaims.py::TestFHIAIMSReader::test_bad_input_wrong_input_line PASSED [ 9%] 364s testsuite/MDAnalysisTests/coordinates/test_fhiaims.py::TestFHIAIMSReader::test_good_input_with_velocity PASSED [ 9%] 364s testsuite/MDAnalysisTests/coordinates/test_fhiaims.py::TestFHIAIMSReader::test_mixed_units PASSED [ 9%] 364s testsuite/MDAnalysisTests/coordinates/test_fhiaims.py::TestFHIAIMSWriter::test_write_different_box PASSED [ 9%] 364s testsuite/MDAnalysisTests/coordinates/test_fhiaims.py::TestFHIAIMSWriter::test_write_selection PASSED [ 9%] 364s testsuite/MDAnalysisTests/coordinates/test_fhiaims.py::TestFHIAIMSWriter::test_write_none PASSED [ 9%] 364s testsuite/MDAnalysisTests/coordinates/test_fhiaims.py::TestFHIAIMSWriter::test_no_container PASSED [ 9%] 364s testsuite/MDAnalysisTests/coordinates/test_fhiaims.py::TestFHIAIMSWriter::test_write_not_changing_ts PASSED [ 9%] 364s testsuite/MDAnalysisTests/coordinates/test_fhiaims.py::TestFHIAIMSWriter::test_writer PASSED [ 9%] 364s testsuite/MDAnalysisTests/coordinates/test_fhiaims.py::TestFHIAIMSWriter::test_writer_with_velocity PASSED [ 9%] 364s testsuite/MDAnalysisTests/coordinates/test_fhiaims.py::TestFHIAIMSWriter::test_writer_no_atom_names PASSED [ 9%] 364s testsuite/MDAnalysisTests/coordinates/test_fhiaims.py::TestFHIAIMSWriter::test_writer_with_n_atoms_none PASSED [ 9%] 364s testsuite/MDAnalysisTests/coordinates/test_gms.py::TestGMSReader::test_n_frames PASSED [ 9%] 364s testsuite/MDAnalysisTests/coordinates/test_gms.py::TestGMSReader::test_random_access PASSED [ 9%] 364s testsuite/MDAnalysisTests/coordinates/test_gms.py::TestGMSReader::test_rewind PASSED [ 9%] 364s testsuite/MDAnalysisTests/coordinates/test_gms.py::TestGMSReader::test_next PASSED [ 9%] 364s testsuite/MDAnalysisTests/coordinates/test_gms.py::TestGMSReader::test_step5distances PASSED [ 9%] 364s testsuite/MDAnalysisTests/coordinates/test_gms.py::TestGMSReaderSO::test_n_frames PASSED [ 9%] 364s testsuite/MDAnalysisTests/coordinates/test_gms.py::TestGMSReaderSO::test_random_access PASSED [ 9%] 364s testsuite/MDAnalysisTests/coordinates/test_gms.py::TestGMSReaderSO::test_rewind PASSED [ 9%] 364s testsuite/MDAnalysisTests/coordinates/test_gms.py::TestGMSReaderSO::test_next PASSED [ 9%] 364s testsuite/MDAnalysisTests/coordinates/test_gms.py::TestGMSReaderSO::test_step5distances PASSED [ 9%] 364s testsuite/MDAnalysisTests/coordinates/test_gms.py::TestGMSReaderASS::test_n_frames PASSED [ 9%] 364s testsuite/MDAnalysisTests/coordinates/test_gms.py::TestGMSReaderASS::test_random_access PASSED [ 9%] 364s testsuite/MDAnalysisTests/coordinates/test_gms.py::TestGMSReaderASS::test_rewind PASSED [ 9%] 364s testsuite/MDAnalysisTests/coordinates/test_gms.py::TestGMSReaderASS::test_next PASSED [ 9%] 364s testsuite/MDAnalysisTests/coordinates/test_gms.py::TestGMSReaderASS::test_step5distances PASSED [ 9%] 364s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROReaderOld::test_load_gro PASSED [ 9%] 364s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROReaderOld::test_coordinates PASSED [ 9%] 364s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROReaderOld::test_distances PASSED [ 9%] 364s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROReaderOld::test_selection PASSED [ 9%] 364s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROReaderOld::test_unitcell PASSED [ 9%] 365s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROReaderNoConversionOld::test_coordinates PASSED [ 9%] 365s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROReaderNoConversionOld::test_distances PASSED [ 9%] 365s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROReaderNoConversionOld::test_unitcell PASSED [ 9%] 365s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROReaderNoConversionOld::test_volume PASSED [ 9%] 365s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROReader::test_n_atoms PASSED [ 9%] 365s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROReader::test_n_frames PASSED [ 9%] 365s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROReader::test_first_frame PASSED [ 9%] 365s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROReader::test_double_close PASSED [ 9%] 365s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROReader::test_get_writer_1 PASSED [ 9%] 365s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROReader::test_get_writer_2 PASSED [ 9%] 365s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROReader::test_ts_dt_matches_reader PASSED [ 9%] 365s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROReader::test_first_dimensions PASSED [ 9%] 365s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROReader::test_changing_dimensions PASSED [ 9%] 365s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROReader::test_volume PASSED [ 9%] 365s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROReader::test_add_same_auxname_raises_ValueError PASSED [ 9%] 365s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROReader::test_remove_auxiliary PASSED [ 9%] 365s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROReader::test_remove_nonexistant_auxiliary_raises_ValueError PASSED [ 9%] 365s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROReader::test_get_aux_attribute PASSED [ 9%] 365s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROReader::test_reload_auxiliaries_from_description PASSED [ 9%] 365s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROReader::test_stop_iter PASSED [ 9%] 365s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROReader::test_transformations_iter PASSED [ 9%] 365s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROReader::test_transformations_2iter PASSED [ 9%] 365s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROReader::test_transformations_slice PASSED [ 9%] 365s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROReader::test_transformations_switch_frame PASSED [ 9%] 365s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROReader::test_transformation_rewind PASSED [ 9%] 365s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROReader::test_transformations_copy PASSED [ 9%] 365s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROReader::test_add_another_transformations_raises_ValueError PASSED [ 9%] 365s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROReader::test_pickle_reader PASSED [ 9%] 365s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROReader::test_frame_collect_all_same PASSED [ 9%] 365s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROReader::test_full_slice PASSED [ 9%] 365s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROWriter::test_write_different_box PASSED [ 9%] 365s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROWriter::test_write_selection PASSED [ 9%] 365s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROWriter::test_write_none PASSED [ 9%] 365s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROWriter::test_no_container PASSED [ 9%] 365s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROWriter::test_write_not_changing_ts PASSED [ 9%] 365s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROWriter::test_write_velocities PASSED [ 9%] 365s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROWriter::test_write_no_resnames PASSED [ 9%] 365s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROWriter::test_write_no_resids PASSED [ 9%] 365s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROWriter::test_writer_no_atom_names PASSED [ 9%] 365s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROWriter::test_check_coordinate_limits_min PASSED [ 9%] 365s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROWriter::test_check_coordinate_limits_max PASSED [ 9%] 366s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROWriter::test_check_coordinate_limits_max_noconversion PASSED [ 9%] 366s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROReaderNoConversion::test_n_atoms PASSED [ 9%] 366s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROReaderNoConversion::test_n_frames PASSED [ 9%] 366s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROReaderNoConversion::test_first_frame PASSED [ 9%] 366s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROReaderNoConversion::test_double_close PASSED [ 9%] 366s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROReaderNoConversion::test_get_writer_1 PASSED [ 9%] 366s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROReaderNoConversion::test_get_writer_2 PASSED [ 9%] 366s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROReaderNoConversion::test_ts_dt_matches_reader PASSED [ 9%] 366s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROReaderNoConversion::test_first_dimensions PASSED [ 9%] 366s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROReaderNoConversion::test_changing_dimensions PASSED [ 9%] 366s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROReaderNoConversion::test_volume PASSED [ 9%] 366s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROReaderNoConversion::test_add_same_auxname_raises_ValueError PASSED [ 9%] 366s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROReaderNoConversion::test_remove_auxiliary PASSED [ 9%] 366s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROReaderNoConversion::test_remove_nonexistant_auxiliary_raises_ValueError PASSED [ 9%] 366s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROReaderNoConversion::test_get_aux_attribute PASSED [ 9%] 366s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROReaderNoConversion::test_reload_auxiliaries_from_description PASSED [ 9%] 366s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROReaderNoConversion::test_stop_iter PASSED [ 9%] 366s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROReaderNoConversion::test_transformations_iter PASSED [ 9%] 366s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROReaderNoConversion::test_transformations_2iter PASSED [ 9%] 366s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROReaderNoConversion::test_transformations_slice PASSED [ 9%] 366s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROReaderNoConversion::test_transformations_switch_frame PASSED [ 9%] 366s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROReaderNoConversion::test_transformation_rewind PASSED [ 9%] 366s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROReaderNoConversion::test_transformations_copy PASSED [ 9%] 366s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROReaderNoConversion::test_add_another_transformations_raises_ValueError PASSED [ 9%] 366s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROReaderNoConversion::test_pickle_reader PASSED [ 9%] 366s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROReaderNoConversion::test_frame_collect_all_same PASSED [ 9%] 366s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROWriterNoConversion::test_write_different_box PASSED [ 9%] 366s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROWriterNoConversion::test_write_selection PASSED [ 9%] 366s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROWriterNoConversion::test_write_none PASSED [ 9%] 366s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROWriterNoConversion::test_no_container PASSED [ 9%] 366s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROWriterNoConversion::test_write_not_changing_ts PASSED [ 9%] 366s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROReaderIncompleteVelocities::test_n_atoms PASSED [ 9%] 366s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROReaderIncompleteVelocities::test_n_frames PASSED [ 9%] 366s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROReaderIncompleteVelocities::test_first_frame PASSED [ 9%] 366s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROReaderIncompleteVelocities::test_double_close PASSED [ 9%] 366s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROReaderIncompleteVelocities::test_get_writer_1 PASSED [ 9%] 366s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROReaderIncompleteVelocities::test_get_writer_2 PASSED [ 9%] 366s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROReaderIncompleteVelocities::test_ts_dt_matches_reader PASSED [ 9%] 366s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROReaderIncompleteVelocities::test_first_dimensions PASSED [ 9%] 366s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROReaderIncompleteVelocities::test_changing_dimensions PASSED [ 9%] 366s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROReaderIncompleteVelocities::test_volume PASSED [ 9%] 366s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROReaderIncompleteVelocities::test_add_same_auxname_raises_ValueError PASSED [ 9%] 366s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROReaderIncompleteVelocities::test_remove_auxiliary PASSED [ 9%] 366s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROReaderIncompleteVelocities::test_remove_nonexistant_auxiliary_raises_ValueError PASSED [ 9%] 366s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROReaderIncompleteVelocities::test_get_aux_attribute PASSED [ 9%] 366s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROReaderIncompleteVelocities::test_reload_auxiliaries_from_description PASSED [ 9%] 366s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROReaderIncompleteVelocities::test_stop_iter PASSED [ 9%] 366s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROReaderIncompleteVelocities::test_transformations_iter PASSED [ 9%] 366s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROReaderIncompleteVelocities::test_transformations_2iter PASSED [ 9%] 366s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROReaderIncompleteVelocities::test_transformations_slice PASSED [ 9%] 366s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROReaderIncompleteVelocities::test_transformations_switch_frame PASSED [ 9%] 366s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROReaderIncompleteVelocities::test_transformation_rewind PASSED [ 9%] 366s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROReaderIncompleteVelocities::test_transformations_copy PASSED [ 9%] 366s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROReaderIncompleteVelocities::test_add_another_transformations_raises_ValueError PASSED [ 9%] 366s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROReaderIncompleteVelocities::test_pickle_reader PASSED [ 9%] 366s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROReaderIncompleteVelocities::test_frame_collect_all_same PASSED [ 9%] 366s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROWriterIncompleteVelocities::test_write_different_box PASSED [ 9%] 366s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROWriterIncompleteVelocities::test_write_selection PASSED [ 9%] 366s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROWriterIncompleteVelocities::test_write_none PASSED [ 9%] 366s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROWriterIncompleteVelocities::test_no_container PASSED [ 9%] 366s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROWriterIncompleteVelocities::test_write_not_changing_ts PASSED [ 9%] 366s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROBZ2Reader::test_n_atoms PASSED [ 10%] 366s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROBZ2Reader::test_n_frames PASSED [ 10%] 366s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROBZ2Reader::test_first_frame PASSED [ 10%] 366s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROBZ2Reader::test_double_close PASSED [ 10%] 366s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROBZ2Reader::test_get_writer_1 PASSED [ 10%] 366s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROBZ2Reader::test_get_writer_2 PASSED [ 10%] 366s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROBZ2Reader::test_ts_dt_matches_reader PASSED [ 10%] 366s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROBZ2Reader::test_first_dimensions PASSED [ 10%] 366s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROBZ2Reader::test_changing_dimensions PASSED [ 10%] 366s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROBZ2Reader::test_volume PASSED [ 10%] 366s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROBZ2Reader::test_add_same_auxname_raises_ValueError PASSED [ 10%] 366s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROBZ2Reader::test_remove_auxiliary PASSED [ 10%] 366s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROBZ2Reader::test_remove_nonexistant_auxiliary_raises_ValueError PASSED [ 10%] 366s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROBZ2Reader::test_get_aux_attribute PASSED [ 10%] 366s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROBZ2Reader::test_reload_auxiliaries_from_description PASSED [ 10%] 366s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROBZ2Reader::test_stop_iter PASSED [ 10%] 366s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROBZ2Reader::test_transformations_iter PASSED [ 10%] 366s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROBZ2Reader::test_transformations_2iter PASSED [ 10%] 366s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROBZ2Reader::test_transformations_slice PASSED [ 10%] 366s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROBZ2Reader::test_transformations_switch_frame PASSED [ 10%] 366s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROBZ2Reader::test_transformation_rewind PASSED [ 10%] 366s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROBZ2Reader::test_transformations_copy PASSED [ 10%] 366s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROBZ2Reader::test_add_another_transformations_raises_ValueError PASSED [ 10%] 366s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROBZ2Reader::test_pickle_reader PASSED [ 10%] 366s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROBZ2Reader::test_frame_collect_all_same PASSED [ 10%] 366s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROBZ2Writer::test_write_different_box PASSED [ 10%] 366s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROBZ2Writer::test_write_selection PASSED [ 10%] 366s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROBZ2Writer::test_write_none PASSED [ 10%] 366s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROBZ2Writer::test_no_container PASSED [ 10%] 366s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROBZ2Writer::test_write_not_changing_ts PASSED [ 10%] 367s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROLargeWriter::test_write_different_box PASSED [ 10%] 370s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROLargeWriter::test_write_selection PASSED [ 10%] 370s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROLargeWriter::test_write_none PASSED [ 10%] 370s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROLargeWriter::test_no_container PASSED [ 10%] 372s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROLargeWriter::test_write_not_changing_ts PASSED [ 10%] 376s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROLargeWriter::test_writer_large PASSED [ 10%] 378s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROLargeWriter::test_writer_large_residue_count PASSED [ 10%] 378s testsuite/MDAnalysisTests/coordinates/test_gro.py::test_growriter_resid_truncation PASSED [ 10%] 378s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGrowriterReindex::test_growriter_resid_true PASSED [ 10%] 378s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGrowriterReindex::test_growriter_resid_false PASSED [ 10%] 378s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGrowriterReindex::test_writer_resid_false PASSED [ 10%] 378s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGrowriterReindex::test_writer_resid_true PASSED [ 10%] 378s testsuite/MDAnalysisTests/coordinates/test_gro.py::test_multiframe_gro PASSED [ 10%] 378s testsuite/MDAnalysisTests/coordinates/test_gro.py::test_huge_box_gro PASSED [ 10%] 378s testsuite/MDAnalysisTests/coordinates/test_gro.py::test_bad_box[1] PASSED [ 10%] 378s testsuite/MDAnalysisTests/coordinates/test_gro.py::test_bad_box[2] PASSED [ 10%] 378s testsuite/MDAnalysisTests/coordinates/test_gro.py::test_bad_box[4] PASSED [ 10%] 378s testsuite/MDAnalysisTests/coordinates/test_gro.py::test_bad_box[5] PASSED [ 10%] 378s testsuite/MDAnalysisTests/coordinates/test_gro.py::test_bad_box[6] PASSED [ 10%] 378s testsuite/MDAnalysisTests/coordinates/test_gro.py::test_bad_box[7] PASSED [ 10%] 378s testsuite/MDAnalysisTests/coordinates/test_gro.py::test_bad_box[8] PASSED [ 10%] 378s testsuite/MDAnalysisTests/coordinates/test_gro.py::test_gro_empty_box_write_read PASSED [ 10%] 378s testsuite/MDAnalysisTests/coordinates/test_gsd.py::test_no_gsd_u_raises PASSED [ 10%] 378s testsuite/MDAnalysisTests/coordinates/test_gsd.py::test_gsd_reader_raises PASSED [ 10%] 378s testsuite/MDAnalysisTests/coordinates/test_gsd.py::TestGSDReader::test_gsd_positions SKIPPED [ 10%] 378s testsuite/MDAnalysisTests/coordinates/test_gsd.py::TestGSDReader::test_gsd_n_frames SKIPPED [ 10%] 378s testsuite/MDAnalysisTests/coordinates/test_gsd.py::TestGSDReader::test_gsd_dimensions SKIPPED [ 10%] 378s testsuite/MDAnalysisTests/coordinates/test_gsd.py::TestGSDReader::test_gsd_data_step SKIPPED [ 10%] 378s testsuite/MDAnalysisTests/coordinates/test_h5md.py::TestH5MDReaderBaseAPI::test_n_atoms PASSED [ 10%] 378s testsuite/MDAnalysisTests/coordinates/test_h5md.py::TestH5MDReaderBaseAPI::test_n_frames PASSED [ 10%] 378s testsuite/MDAnalysisTests/coordinates/test_h5md.py::TestH5MDReaderBaseAPI::test_first_frame PASSED [ 10%] 378s testsuite/MDAnalysisTests/coordinates/test_h5md.py::TestH5MDReaderBaseAPI::test_double_close PASSED [ 10%] 378s testsuite/MDAnalysisTests/coordinates/test_h5md.py::TestH5MDReaderBaseAPI::test_ts_dt_matches_reader PASSED [ 10%] 378s testsuite/MDAnalysisTests/coordinates/test_h5md.py::TestH5MDReaderBaseAPI::test_first_dimensions PASSED [ 10%] 378s testsuite/MDAnalysisTests/coordinates/test_h5md.py::TestH5MDReaderBaseAPI::test_changing_dimensions PASSED [ 10%] 378s testsuite/MDAnalysisTests/coordinates/test_h5md.py::TestH5MDReaderBaseAPI::test_volume PASSED [ 10%] 378s testsuite/MDAnalysisTests/coordinates/test_h5md.py::TestH5MDReaderBaseAPI::test_add_same_auxname_raises_ValueError PASSED [ 10%] 378s testsuite/MDAnalysisTests/coordinates/test_h5md.py::TestH5MDReaderBaseAPI::test_remove_auxiliary PASSED [ 10%] 378s testsuite/MDAnalysisTests/coordinates/test_h5md.py::TestH5MDReaderBaseAPI::test_remove_nonexistant_auxiliary_raises_ValueError PASSED [ 10%] 378s testsuite/MDAnalysisTests/coordinates/test_h5md.py::TestH5MDReaderBaseAPI::test_get_aux_attribute PASSED [ 10%] 378s testsuite/MDAnalysisTests/coordinates/test_h5md.py::TestH5MDReaderBaseAPI::test_reload_auxiliaries_from_description PASSED [ 10%] 378s testsuite/MDAnalysisTests/coordinates/test_h5md.py::TestH5MDReaderBaseAPI::test_stop_iter PASSED [ 10%] 378s testsuite/MDAnalysisTests/coordinates/test_h5md.py::TestH5MDReaderBaseAPI::test_transformations_iter PASSED [ 10%] 378s testsuite/MDAnalysisTests/coordinates/test_h5md.py::TestH5MDReaderBaseAPI::test_transformations_2iter PASSED [ 10%] 378s testsuite/MDAnalysisTests/coordinates/test_h5md.py::TestH5MDReaderBaseAPI::test_transformations_slice PASSED [ 10%] 378s testsuite/MDAnalysisTests/coordinates/test_h5md.py::TestH5MDReaderBaseAPI::test_transformations_switch_frame PASSED [ 10%] 378s testsuite/MDAnalysisTests/coordinates/test_h5md.py::TestH5MDReaderBaseAPI::test_transformation_rewind PASSED [ 10%] 379s testsuite/MDAnalysisTests/coordinates/test_h5md.py::TestH5MDReaderBaseAPI::test_transformations_copy PASSED [ 10%] 379s testsuite/MDAnalysisTests/coordinates/test_h5md.py::TestH5MDReaderBaseAPI::test_add_another_transformations_raises_ValueError PASSED [ 10%] 379s testsuite/MDAnalysisTests/coordinates/test_h5md.py::TestH5MDReaderBaseAPI::test_pickle_reader PASSED [ 10%] 379s testsuite/MDAnalysisTests/coordinates/test_h5md.py::TestH5MDReaderBaseAPI::test_frame_collect_all_same PASSED [ 10%] 379s testsuite/MDAnalysisTests/coordinates/test_h5md.py::TestH5MDReaderBaseAPI::test_go_over_last_frame PASSED [ 10%] 379s testsuite/MDAnalysisTests/coordinates/test_h5md.py::TestH5MDReaderBaseAPI::test_reopen PASSED [ 10%] 379s testsuite/MDAnalysisTests/coordinates/test_h5md.py::TestH5MDReaderBaseAPI::test_pickle_next_ts_reader PASSED [ 10%] 379s testsuite/MDAnalysisTests/coordinates/test_h5md.py::TestH5MDReaderBaseAPI::test_pickle_last_ts_reader PASSED [ 10%] 379s testsuite/MDAnalysisTests/coordinates/test_h5md.py::TestH5MDReaderBaseAPI::test_get_writer_1 PASSED [ 10%] 379s testsuite/MDAnalysisTests/coordinates/test_h5md.py::TestH5MDReaderBaseAPI::test_get_writer_2 PASSED [ 10%] 379s testsuite/MDAnalysisTests/coordinates/test_h5md.py::TestH5MDReaderBaseAPI::test_copying PASSED [ 10%] 379s testsuite/MDAnalysisTests/coordinates/test_h5md.py::TestH5MDWriterBaseAPI::test_write_different_box PASSED [ 10%] 379s testsuite/MDAnalysisTests/coordinates/test_h5md.py::TestH5MDWriterBaseAPI::test_write_selection PASSED [ 10%] 379s testsuite/MDAnalysisTests/coordinates/test_h5md.py::TestH5MDWriterBaseAPI::test_write_none PASSED [ 10%] 379s testsuite/MDAnalysisTests/coordinates/test_h5md.py::TestH5MDWriterBaseAPI::test_no_container PASSED [ 10%] 379s testsuite/MDAnalysisTests/coordinates/test_h5md.py::TestH5MDWriterBaseAPI::test_write_not_changing_ts PASSED [ 10%] 379s testsuite/MDAnalysisTests/coordinates/test_h5md.py::TestH5MDReaderWithRealTrajectory::test_n_frames PASSED [ 10%] 379s testsuite/MDAnalysisTests/coordinates/test_h5md.py::TestH5MDReaderWithRealTrajectory::test_positions PASSED [ 10%] 379s testsuite/MDAnalysisTests/coordinates/test_h5md.py::TestH5MDReaderWithRealTrajectory::test_h5md_velocities PASSED [ 10%] 379s testsuite/MDAnalysisTests/coordinates/test_h5md.py::TestH5MDReaderWithRealTrajectory::test_h5md_forces PASSED [ 10%] 379s testsuite/MDAnalysisTests/coordinates/test_h5md.py::TestH5MDReaderWithRealTrajectory::test_h5md_dimensions PASSED [ 10%] 379s testsuite/MDAnalysisTests/coordinates/test_h5md.py::TestH5MDReaderWithRealTrajectory::test_h5md_data_step PASSED [ 10%] 379s testsuite/MDAnalysisTests/coordinates/test_h5md.py::TestH5MDReaderWithRealTrajectory::test_rewind PASSED [ 10%] 379s testsuite/MDAnalysisTests/coordinates/test_h5md.py::TestH5MDReaderWithRealTrajectory::test_next PASSED [ 10%] 379s testsuite/MDAnalysisTests/coordinates/test_h5md.py::TestH5MDReaderWithRealTrajectory::test_jump_last_frame PASSED [ 10%] 379s testsuite/MDAnalysisTests/coordinates/test_h5md.py::TestH5MDReaderWithRealTrajectory::test_slice[0-2-1] PASSED [ 10%] 379s testsuite/MDAnalysisTests/coordinates/test_h5md.py::TestH5MDReaderWithRealTrajectory::test_slice[1-2-1] PASSED [ 10%] 379s testsuite/MDAnalysisTests/coordinates/test_h5md.py::TestH5MDReaderWithRealTrajectory::test_array_like[list] PASSED [ 10%] 379s testsuite/MDAnalysisTests/coordinates/test_h5md.py::TestH5MDReaderWithRealTrajectory::test_array_like[array] PASSED [ 10%] 379s testsuite/MDAnalysisTests/coordinates/test_h5md.py::TestH5MDReaderWithRealTrajectory::test_list_indices PASSED [ 10%] 379s testsuite/MDAnalysisTests/coordinates/test_h5md.py::TestH5MDReaderWithRealTrajectory::test_no_group[position-positions] PASSED [ 10%] 379s testsuite/MDAnalysisTests/coordinates/test_h5md.py::TestH5MDReaderWithRealTrajectory::test_no_group[velocity-velocities] PASSED [ 10%] 380s testsuite/MDAnalysisTests/coordinates/test_h5md.py::TestH5MDReaderWithRealTrajectory::test_no_group[force-forces] PASSED [ 10%] 380s testsuite/MDAnalysisTests/coordinates/test_h5md.py::TestH5MDReaderWithRealTrajectory::test_unknown_unit[position/value] PASSED [ 10%] 380s testsuite/MDAnalysisTests/coordinates/test_h5md.py::TestH5MDReaderWithRealTrajectory::test_unknown_unit[position/time] PASSED [ 10%] 380s testsuite/MDAnalysisTests/coordinates/test_h5md.py::TestH5MDReaderWithRealTrajectory::test_unknown_unit[velocity/value] PASSED [ 10%] 380s testsuite/MDAnalysisTests/coordinates/test_h5md.py::TestH5MDReaderWithRealTrajectory::test_unknown_unit[force/value] PASSED [ 10%] 380s testsuite/MDAnalysisTests/coordinates/test_h5md.py::TestH5MDReaderWithRealTrajectory::test_length_unit_from_box PASSED [ 10%] 380s testsuite/MDAnalysisTests/coordinates/test_h5md.py::TestH5MDReaderWithRealTrajectory::test_changing_n_atoms[position] PASSED [ 10%] 380s testsuite/MDAnalysisTests/coordinates/test_h5md.py::TestH5MDReaderWithRealTrajectory::test_changing_n_atoms[velocity] PASSED [ 10%] 380s testsuite/MDAnalysisTests/coordinates/test_h5md.py::TestH5MDReaderWithRealTrajectory::test_changing_n_atoms[force] PASSED [ 10%] 380s testsuite/MDAnalysisTests/coordinates/test_h5md.py::TestH5MDReaderWithRealTrajectory::test_2D_box PASSED [ 10%] 381s testsuite/MDAnalysisTests/coordinates/test_h5md.py::TestH5MDReaderWithRealTrajectory::test_box_vector PASSED [ 10%] 381s testsuite/MDAnalysisTests/coordinates/test_h5md.py::TestH5MDReaderWithRealTrajectory::test_no_box PASSED [ 10%] 381s testsuite/MDAnalysisTests/coordinates/test_h5md.py::TestH5MDReaderWithRealTrajectory::test_no_groups PASSED [ 10%] 381s testsuite/MDAnalysisTests/coordinates/test_h5md.py::TestH5MDReaderWithRealTrajectory::test_no_convert_units PASSED [ 10%] 381s testsuite/MDAnalysisTests/coordinates/test_h5md.py::TestH5MDReaderWithRealTrajectory::test_no_units_but_convert_units_true_error PASSED [ 10%] 381s testsuite/MDAnalysisTests/coordinates/test_h5md.py::TestH5MDReaderWithRealTrajectory::test_open_filestream XFAIL [ 10%] 382s testsuite/MDAnalysisTests/coordinates/test_h5md.py::TestH5MDReaderWithRealTrajectory::test_wrong_driver PASSED [ 10%] 382s testsuite/MDAnalysisTests/coordinates/test_h5md.py::TestH5MDReaderWithRealTrajectory::test_open_with_driver PASSED [ 10%] 382s testsuite/MDAnalysisTests/coordinates/test_h5md.py::TestH5MDReaderWithRealTrajectory::test_parse_n_atoms[velocity-force] PASSED [ 10%] 382s testsuite/MDAnalysisTests/coordinates/test_h5md.py::TestH5MDReaderWithRealTrajectory::test_parse_n_atoms[position-force] PASSED [ 10%] 382s testsuite/MDAnalysisTests/coordinates/test_h5md.py::TestH5MDReaderWithRealTrajectory::test_parse_n_atoms[position-velocity] PASSED [ 10%] 382s testsuite/MDAnalysisTests/coordinates/test_h5md.py::TestH5MDReaderWithRealTrajectory::test_parse_n_atoms_error PASSED [ 10%] 382s testsuite/MDAnalysisTests/coordinates/test_h5md.py::TestH5MDWriterWithRealTrajectory::test_n_atoms_errors[0-ValueError-H5MDWriter: no atoms in output trajectory] PASSED [ 10%] 382s testsuite/MDAnalysisTests/coordinates/test_h5md.py::TestH5MDWriterWithRealTrajectory::test_n_atoms_errors[0.5-OSError-H5MDWriter: Timestep does not have] PASSED [ 10%] 382s testsuite/MDAnalysisTests/coordinates/test_h5md.py::TestH5MDWriterWithRealTrajectory::test_chunk_error PASSED [ 10%] 382s testsuite/MDAnalysisTests/coordinates/test_h5md.py::TestH5MDWriterWithRealTrajectory::test_no_dimensions[None] PASSED [ 10%] 382s testsuite/MDAnalysisTests/coordinates/test_h5md.py::TestH5MDWriterWithRealTrajectory::test_no_dimensions[0] PASSED [ 10%] 383s testsuite/MDAnalysisTests/coordinates/test_h5md.py::TestH5MDWriterWithRealTrajectory::test_step_not_monotonic PASSED [ 10%] 383s testsuite/MDAnalysisTests/coordinates/test_h5md.py::TestH5MDWriterWithRealTrajectory::test_step_from_frame PASSED [ 10%] 383s testsuite/MDAnalysisTests/coordinates/test_h5md.py::TestH5MDWriterWithRealTrajectory::test_has_property PASSED [ 10%] 383s testsuite/MDAnalysisTests/coordinates/test_h5md.py::TestH5MDWriterWithRealTrajectory::test_write_trajectory[True-False-False] PASSED [ 10%] 384s testsuite/MDAnalysisTests/coordinates/test_h5md.py::TestH5MDWriterWithRealTrajectory::test_write_trajectory[True-True-False] PASSED [ 10%] 384s testsuite/MDAnalysisTests/coordinates/test_h5md.py::TestH5MDWriterWithRealTrajectory::test_write_trajectory[True-False-True] PASSED [ 10%] 384s testsuite/MDAnalysisTests/coordinates/test_h5md.py::TestH5MDWriterWithRealTrajectory::test_write_trajectory[True-True-True] PASSED [ 10%] 385s testsuite/MDAnalysisTests/coordinates/test_h5md.py::TestH5MDWriterWithRealTrajectory::test_write_trajectory[False-True-True] PASSED [ 10%] 385s testsuite/MDAnalysisTests/coordinates/test_h5md.py::TestH5MDWriterWithRealTrajectory::test_write_trajectory[False-False-True] PASSED [ 10%] 385s testsuite/MDAnalysisTests/coordinates/test_h5md.py::TestH5MDWriterWithRealTrajectory::test_write_trajectory[False-False-False] PASSED [ 10%] 385s testsuite/MDAnalysisTests/coordinates/test_h5md.py::TestH5MDWriterWithRealTrajectory::test_write_AtomGroup_with PASSED [ 10%] 385s testsuite/MDAnalysisTests/coordinates/test_h5md.py::TestH5MDWriterWithRealTrajectory::test_ag_write[None-1] PASSED [ 10%] 386s testsuite/MDAnalysisTests/coordinates/test_h5md.py::TestH5MDWriterWithRealTrajectory::test_ag_write[all-3] PASSED [ 10%] 386s testsuite/MDAnalysisTests/coordinates/test_h5md.py::TestH5MDWriterWithRealTrajectory::test_write_custom_units[fs-Angstrom-Angstrom/ps-kJ/(mol*Angstrom)] PASSED [ 10%] 386s testsuite/MDAnalysisTests/coordinates/test_h5md.py::TestH5MDWriterWithRealTrajectory::test_write_custom_units[s-pm-m/s-Newton] PASSED [ 10%] 386s testsuite/MDAnalysisTests/coordinates/test_h5md.py::TestH5MDWriterWithRealTrajectory::test_write_custom_units[ps-fm-Angstrom/fs-kcal/(mol*Angstrom)] PASSED [ 10%] 386s testsuite/MDAnalysisTests/coordinates/test_h5md.py::TestH5MDWriterWithRealTrajectory::test_write_custom_units[AKMA-nm-Angstrom/AKMA-kcal/(mol*Angstrom)] PASSED [ 10%] 387s testsuite/MDAnalysisTests/coordinates/test_h5md.py::TestH5MDWriterWithRealTrajectory::test_write_bad_units[imaginary time-None-None-None] PASSED [ 10%] 387s testsuite/MDAnalysisTests/coordinates/test_h5md.py::TestH5MDWriterWithRealTrajectory::test_write_bad_units[None-None-c-None] PASSED [ 10%] 387s testsuite/MDAnalysisTests/coordinates/test_h5md.py::TestH5MDWriterWithRealTrajectory::test_write_bad_units[None-None-None-HUGE FORCE] PASSED [ 10%] 387s testsuite/MDAnalysisTests/coordinates/test_h5md.py::TestH5MDWriterWithRealTrajectory::test_write_bad_units[None-lightyear-None-None] PASSED [ 10%] 387s testsuite/MDAnalysisTests/coordinates/test_h5md.py::TestH5MDWriterWithRealTrajectory::test_no_units_w_convert_true PASSED [ 10%] 387s testsuite/MDAnalysisTests/coordinates/test_h5md.py::TestH5MDWriterWithRealTrajectory::test_no_units_w_convert_false PASSED [ 10%] 387s testsuite/MDAnalysisTests/coordinates/test_h5md.py::TestH5MDWriterWithRealTrajectory::test_convert_units[True] PASSED [ 10%] 388s testsuite/MDAnalysisTests/coordinates/test_h5md.py::TestH5MDWriterWithRealTrajectory::test_convert_units[False] PASSED [ 10%] 388s testsuite/MDAnalysisTests/coordinates/test_h5md.py::TestH5MDWriterWithRealTrajectory::test_write_chunks[chunks0] PASSED [ 10%] 388s testsuite/MDAnalysisTests/coordinates/test_h5md.py::TestH5MDWriterWithRealTrajectory::test_write_chunks[chunks1] PASSED [ 10%] 389s testsuite/MDAnalysisTests/coordinates/test_h5md.py::TestH5MDWriterWithRealTrajectory::test_write_chunks[chunks2] PASSED [ 10%] 389s testsuite/MDAnalysisTests/coordinates/test_h5md.py::TestH5MDWriterWithRealTrajectory::test_write_chunks_with_nframes PASSED [ 10%] 389s testsuite/MDAnalysisTests/coordinates/test_h5md.py::TestH5MDWriterWithRealTrajectory::test_write_contiguous1 PASSED [ 10%] 390s testsuite/MDAnalysisTests/coordinates/test_h5md.py::TestH5MDWriterWithRealTrajectory::test_write_contiguous2 PASSED [ 10%] 390s testsuite/MDAnalysisTests/coordinates/test_h5md.py::TestH5MDWriterWithRealTrajectory::test_write_with_compression[gzip-1] PASSED [ 10%] 390s testsuite/MDAnalysisTests/coordinates/test_h5md.py::TestH5MDWriterWithRealTrajectory::test_write_with_compression[gzip-9] PASSED [ 10%] 391s testsuite/MDAnalysisTests/coordinates/test_h5md.py::TestH5MDWriterWithRealTrajectory::test_write_with_compression[lzf-None] PASSED [ 10%] 391s testsuite/MDAnalysisTests/coordinates/test_h5md.py::TestH5MDWriterWithRealTrajectory::test_write_with_drivers[core] PASSED [ 10%] 391s testsuite/MDAnalysisTests/coordinates/test_h5md.py::TestH5MDWriterWithRealTrajectory::test_write_with_drivers[stdio] PASSED [ 10%] 392s testsuite/MDAnalysisTests/coordinates/test_h5md.py::TestH5MDWriterWithRealTrajectory::test_parallel_disabled PASSED [ 10%] 392s testsuite/MDAnalysisTests/coordinates/test_h5md.py::TestH5PYNotInstalled::test_reader_no_h5py PASSED [ 10%] 392s testsuite/MDAnalysisTests/coordinates/test_h5md.py::TestH5PYNotInstalled::test_writer_no_h5py PASSED [ 10%] 392s testsuite/MDAnalysisTests/coordinates/test_lammps.py::test_datareader_ValueError PASSED [ 10%] 392s testsuite/MDAnalysisTests/coordinates/test_lammps.py::TestLammpsData_Coords::test_n_atoms PASSED [ 10%] 392s testsuite/MDAnalysisTests/coordinates/test_lammps.py::TestLammpsData_Coords::test_coords PASSED [ 10%] 392s testsuite/MDAnalysisTests/coordinates/test_lammps.py::TestLammpsData_Coords::test_velos PASSED [ 10%] 392s testsuite/MDAnalysisTests/coordinates/test_lammps.py::TestLammpsData_Coords::test_dimensions PASSED [ 10%] 392s testsuite/MDAnalysisTests/coordinates/test_lammps.py::TestLammpsData_Coords::test_singleframe PASSED [ 10%] 392s testsuite/MDAnalysisTests/coordinates/test_lammps.py::TestLammpsData_Coords::test_seek PASSED [ 10%] 392s testsuite/MDAnalysisTests/coordinates/test_lammps.py::TestLammpsData_Coords::test_seek_2 PASSED [ 10%] 392s testsuite/MDAnalysisTests/coordinates/test_lammps.py::TestLammpsDataMini_Coords::test_n_atoms PASSED [ 10%] 392s testsuite/MDAnalysisTests/coordinates/test_lammps.py::TestLammpsDataMini_Coords::test_coords PASSED [ 11%] 392s testsuite/MDAnalysisTests/coordinates/test_lammps.py::TestLammpsDataMini_Coords::test_velos PASSED [ 11%] 392s testsuite/MDAnalysisTests/coordinates/test_lammps.py::TestLammpsDataMini_Coords::test_dimensions PASSED [ 11%] 392s testsuite/MDAnalysisTests/coordinates/test_lammps.py::TestLammpsDataMini_Coords::test_singleframe PASSED [ 11%] 392s testsuite/MDAnalysisTests/coordinates/test_lammps.py::TestLammpsDataMini_Coords::test_seek PASSED [ 11%] 392s testsuite/MDAnalysisTests/coordinates/test_lammps.py::TestLammpsDataMini_Coords::test_seek_2 PASSED [ 11%] 392s testsuite/MDAnalysisTests/coordinates/test_lammps.py::test_unwrap_vel_force PASSED [ 11%] 392s testsuite/MDAnalysisTests/coordinates/test_lammps.py::test_unwrap_image_wrap PASSED [ 11%] 392s testsuite/MDAnalysisTests/coordinates/test_lammps.py::test_unwrap_no_image PASSED [ 11%] 394s testsuite/MDAnalysisTests/coordinates/test_lammps.py::TestLAMMPSDATAWriter::test_Writer_dimensions[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/lammps/datatest.data] PASSED [ 11%] 394s testsuite/MDAnalysisTests/coordinates/test_lammps.py::TestLAMMPSDATAWriter::test_Writer_atoms_types[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/lammps/datatest.data] PASSED [ 11%] 394s testsuite/MDAnalysisTests/coordinates/test_lammps.py::TestLAMMPSDATAWriter::test_Writer_atoms[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/lammps/datatest.data-bonds] PASSED [ 11%] 395s testsuite/MDAnalysisTests/coordinates/test_lammps.py::TestLAMMPSDATAWriter::test_Writer_atoms[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/lammps/datatest.data-angles] PASSED [ 11%] 395s testsuite/MDAnalysisTests/coordinates/test_lammps.py::TestLAMMPSDATAWriter::test_Writer_atoms[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/lammps/datatest.data-dihedrals] PASSED [ 11%] 395s testsuite/MDAnalysisTests/coordinates/test_lammps.py::TestLAMMPSDATAWriter::test_Writer_atoms[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/lammps/datatest.data-impropers] PASSED [ 11%] 395s testsuite/MDAnalysisTests/coordinates/test_lammps.py::TestLAMMPSDATAWriter::test_Writer_numerical_attrs[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/lammps/datatest.data-masses] PASSED [ 11%] 395s testsuite/MDAnalysisTests/coordinates/test_lammps.py::TestLAMMPSDATAWriter::test_Writer_numerical_attrs[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/lammps/datatest.data-charges] PASSED [ 11%] 395s testsuite/MDAnalysisTests/coordinates/test_lammps.py::TestLAMMPSDATAWriter::test_Writer_numerical_attrs[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/lammps/datatest.data-velocities] PASSED [ 11%] 395s testsuite/MDAnalysisTests/coordinates/test_lammps.py::TestLAMMPSDATAWriter::test_Writer_numerical_attrs[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/lammps/datatest.data-positions] PASSED [ 11%] 395s testsuite/MDAnalysisTests/coordinates/test_lammps.py::TestLAMMPSDATAWriter_data_partial::test_Writer_dimensions[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/lammps/datatest.data] PASSED [ 11%] 395s testsuite/MDAnalysisTests/coordinates/test_lammps.py::TestLAMMPSDATAWriter_data_partial::test_Writer_atoms_types[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/lammps/datatest.data] PASSED [ 11%] 395s testsuite/MDAnalysisTests/coordinates/test_lammps.py::TestLAMMPSDATAWriter_data_partial::test_Writer_numerical_attrs[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/lammps/datatest.data-masses] PASSED [ 11%] 395s testsuite/MDAnalysisTests/coordinates/test_lammps.py::TestLAMMPSDATAWriter_data_partial::test_Writer_numerical_attrs[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/lammps/datatest.data-charges] PASSED [ 11%] 395s testsuite/MDAnalysisTests/coordinates/test_lammps.py::TestLAMMPSDATAWriter_data_partial::test_Writer_numerical_attrs[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/lammps/datatest.data-velocities] PASSED [ 11%] 395s testsuite/MDAnalysisTests/coordinates/test_lammps.py::TestLAMMPSDATAWriter_data_partial::test_Writer_numerical_attrs[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/lammps/datatest.data-positions] PASSED [ 11%] 395s testsuite/MDAnalysisTests/coordinates/test_lammps.py::TestLAMMPSDATAWriter::test_Writer_dimensions[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/lammps/mini.data] PASSED [ 11%] 395s testsuite/MDAnalysisTests/coordinates/test_lammps.py::TestLAMMPSDATAWriter::test_Writer_atoms_types[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/lammps/mini.data] PASSED [ 11%] 395s testsuite/MDAnalysisTests/coordinates/test_lammps.py::TestLAMMPSDATAWriter::test_Writer_atoms[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/lammps/mini.data-bonds] PASSED [ 11%] 395s testsuite/MDAnalysisTests/coordinates/test_lammps.py::TestLAMMPSDATAWriter::test_Writer_atoms[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/lammps/mini.data-angles] PASSED [ 11%] 395s testsuite/MDAnalysisTests/coordinates/test_lammps.py::TestLAMMPSDATAWriter::test_Writer_atoms[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/lammps/mini.data-dihedrals] PASSED [ 11%] 395s testsuite/MDAnalysisTests/coordinates/test_lammps.py::TestLAMMPSDATAWriter::test_Writer_atoms[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/lammps/mini.data-impropers] PASSED [ 11%] 395s testsuite/MDAnalysisTests/coordinates/test_lammps.py::TestLAMMPSDATAWriter::test_Writer_numerical_attrs[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/lammps/mini.data-masses] PASSED [ 11%] 395s testsuite/MDAnalysisTests/coordinates/test_lammps.py::TestLAMMPSDATAWriter::test_Writer_numerical_attrs[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/lammps/mini.data-charges] PASSED [ 11%] 395s testsuite/MDAnalysisTests/coordinates/test_lammps.py::TestLAMMPSDATAWriter::test_Writer_numerical_attrs[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/lammps/mini.data-velocities] PASSED [ 11%] 395s testsuite/MDAnalysisTests/coordinates/test_lammps.py::TestLAMMPSDATAWriter::test_Writer_numerical_attrs[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/lammps/mini.data-positions] PASSED [ 11%] 395s testsuite/MDAnalysisTests/coordinates/test_lammps.py::TestLAMMPSDATAWriter_data_partial::test_Writer_dimensions[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/lammps/mini.data] PASSED [ 11%] 395s testsuite/MDAnalysisTests/coordinates/test_lammps.py::TestLAMMPSDATAWriter_data_partial::test_Writer_atoms_types[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/lammps/mini.data] PASSED [ 11%] 395s testsuite/MDAnalysisTests/coordinates/test_lammps.py::TestLAMMPSDATAWriter_data_partial::test_Writer_numerical_attrs[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/lammps/mini.data-masses] PASSED [ 11%] 395s testsuite/MDAnalysisTests/coordinates/test_lammps.py::TestLAMMPSDATAWriter_data_partial::test_Writer_numerical_attrs[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/lammps/mini.data-charges] PASSED [ 11%] 395s testsuite/MDAnalysisTests/coordinates/test_lammps.py::TestLAMMPSDATAWriter_data_partial::test_Writer_numerical_attrs[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/lammps/mini.data-velocities] PASSED [ 11%] 395s testsuite/MDAnalysisTests/coordinates/test_lammps.py::TestLAMMPSDATAWriter_data_partial::test_Writer_numerical_attrs[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/lammps/mini.data-positions] PASSED [ 11%] 395s testsuite/MDAnalysisTests/coordinates/test_lammps.py::TestLAMMPSDATAWriter::test_Writer_dimensions[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/lammps/cnt-hexagonal-class1.data] PASSED [ 11%] 395s testsuite/MDAnalysisTests/coordinates/test_lammps.py::TestLAMMPSDATAWriter::test_Writer_atoms_types[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/lammps/cnt-hexagonal-class1.data] PASSED [ 11%] 395s testsuite/MDAnalysisTests/coordinates/test_lammps.py::TestLAMMPSDATAWriter::test_Writer_atoms[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/lammps/cnt-hexagonal-class1.data-bonds] PASSED [ 11%] 395s testsuite/MDAnalysisTests/coordinates/test_lammps.py::TestLAMMPSDATAWriter::test_Writer_atoms[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/lammps/cnt-hexagonal-class1.data-angles] PASSED [ 11%] 395s testsuite/MDAnalysisTests/coordinates/test_lammps.py::TestLAMMPSDATAWriter::test_Writer_atoms[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/lammps/cnt-hexagonal-class1.data-dihedrals] PASSED [ 11%] 395s testsuite/MDAnalysisTests/coordinates/test_lammps.py::TestLAMMPSDATAWriter::test_Writer_atoms[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/lammps/cnt-hexagonal-class1.data-impropers] PASSED [ 11%] 395s testsuite/MDAnalysisTests/coordinates/test_lammps.py::TestLAMMPSDATAWriter::test_Writer_numerical_attrs[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/lammps/cnt-hexagonal-class1.data-masses] PASSED [ 11%] 395s testsuite/MDAnalysisTests/coordinates/test_lammps.py::TestLAMMPSDATAWriter::test_Writer_numerical_attrs[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/lammps/cnt-hexagonal-class1.data-charges] PASSED [ 11%] 395s testsuite/MDAnalysisTests/coordinates/test_lammps.py::TestLAMMPSDATAWriter::test_Writer_numerical_attrs[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/lammps/cnt-hexagonal-class1.data-velocities] PASSED [ 11%] 395s testsuite/MDAnalysisTests/coordinates/test_lammps.py::TestLAMMPSDATAWriter::test_Writer_numerical_attrs[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/lammps/cnt-hexagonal-class1.data-positions] PASSED [ 11%] 395s testsuite/MDAnalysisTests/coordinates/test_lammps.py::TestLAMMPSDATAWriter_data_partial::test_Writer_dimensions[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/lammps/cnt-hexagonal-class1.data] PASSED [ 11%] 395s testsuite/MDAnalysisTests/coordinates/test_lammps.py::TestLAMMPSDATAWriter_data_partial::test_Writer_atoms_types[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/lammps/cnt-hexagonal-class1.data] PASSED [ 11%] 395s testsuite/MDAnalysisTests/coordinates/test_lammps.py::TestLAMMPSDATAWriter_data_partial::test_Writer_numerical_attrs[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/lammps/cnt-hexagonal-class1.data-masses] PASSED [ 11%] 395s testsuite/MDAnalysisTests/coordinates/test_lammps.py::TestLAMMPSDATAWriter_data_partial::test_Writer_numerical_attrs[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/lammps/cnt-hexagonal-class1.data-charges] PASSED [ 11%] 395s testsuite/MDAnalysisTests/coordinates/test_lammps.py::TestLAMMPSDATAWriter_data_partial::test_Writer_numerical_attrs[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/lammps/cnt-hexagonal-class1.data-velocities] PASSED [ 11%] 395s testsuite/MDAnalysisTests/coordinates/test_lammps.py::TestLAMMPSDATAWriter_data_partial::test_Writer_numerical_attrs[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/lammps/cnt-hexagonal-class1.data-positions] PASSED [ 11%] 395s testsuite/MDAnalysisTests/coordinates/test_lammps.py::TestLAMMPSDATAWriter::test_Writer_dimensions[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/lammps/hydrogen-class1.data] PASSED [ 11%] 395s testsuite/MDAnalysisTests/coordinates/test_lammps.py::TestLAMMPSDATAWriter::test_Writer_atoms_types[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/lammps/hydrogen-class1.data] PASSED [ 11%] 395s testsuite/MDAnalysisTests/coordinates/test_lammps.py::TestLAMMPSDATAWriter::test_Writer_atoms[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/lammps/hydrogen-class1.data-bonds] PASSED [ 11%] 395s testsuite/MDAnalysisTests/coordinates/test_lammps.py::TestLAMMPSDATAWriter::test_Writer_atoms[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/lammps/hydrogen-class1.data-angles] PASSED [ 11%] 395s testsuite/MDAnalysisTests/coordinates/test_lammps.py::TestLAMMPSDATAWriter::test_Writer_atoms[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/lammps/hydrogen-class1.data-dihedrals] PASSED [ 11%] 395s testsuite/MDAnalysisTests/coordinates/test_lammps.py::TestLAMMPSDATAWriter::test_Writer_atoms[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/lammps/hydrogen-class1.data-impropers] PASSED [ 11%] 395s testsuite/MDAnalysisTests/coordinates/test_lammps.py::TestLAMMPSDATAWriter::test_Writer_numerical_attrs[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/lammps/hydrogen-class1.data-masses] PASSED [ 11%] 395s testsuite/MDAnalysisTests/coordinates/test_lammps.py::TestLAMMPSDATAWriter::test_Writer_numerical_attrs[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/lammps/hydrogen-class1.data-charges] PASSED [ 11%] 395s testsuite/MDAnalysisTests/coordinates/test_lammps.py::TestLAMMPSDATAWriter::test_Writer_numerical_attrs[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/lammps/hydrogen-class1.data-velocities] PASSED [ 11%] 395s testsuite/MDAnalysisTests/coordinates/test_lammps.py::TestLAMMPSDATAWriter::test_Writer_numerical_attrs[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/lammps/hydrogen-class1.data-positions] PASSED [ 11%] 395s testsuite/MDAnalysisTests/coordinates/test_lammps.py::TestLAMMPSDATAWriter_data_partial::test_Writer_dimensions[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/lammps/hydrogen-class1.data] PASSED [ 11%] 395s testsuite/MDAnalysisTests/coordinates/test_lammps.py::TestLAMMPSDATAWriter_data_partial::test_Writer_atoms_types[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/lammps/hydrogen-class1.data] PASSED [ 11%] 395s testsuite/MDAnalysisTests/coordinates/test_lammps.py::TestLAMMPSDATAWriter_data_partial::test_Writer_numerical_attrs[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/lammps/hydrogen-class1.data-masses] PASSED [ 11%] 395s testsuite/MDAnalysisTests/coordinates/test_lammps.py::TestLAMMPSDATAWriter_data_partial::test_Writer_numerical_attrs[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/lammps/hydrogen-class1.data-charges] PASSED [ 11%] 395s testsuite/MDAnalysisTests/coordinates/test_lammps.py::TestLAMMPSDATAWriter_data_partial::test_Writer_numerical_attrs[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/lammps/hydrogen-class1.data-velocities] PASSED [ 11%] 395s testsuite/MDAnalysisTests/coordinates/test_lammps.py::TestLAMMPSDATAWriter_data_partial::test_Writer_numerical_attrs[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/lammps/hydrogen-class1.data-positions] PASSED [ 11%] 397s testsuite/MDAnalysisTests/coordinates/test_lammps.py::TestLAMMPSDATAWriter_molecule_tag::test_molecule_tag[LAMMPSDATAWriter_molecule_tag0] PASSED [ 11%] 397s testsuite/MDAnalysisTests/coordinates/test_lammps.py::TestLAMMPSDATAWriter_molecule_tag::test_molecule_tag[LAMMPSDATAWriter_molecule_tag1] PASSED [ 11%] 397s testsuite/MDAnalysisTests/coordinates/test_lammps.py::TestLAMMPSDATAWriter_molecule_tag::test_molecule_tag[LAMMPSDATAWriter_molecule_tag2] PASSED [ 11%] 397s testsuite/MDAnalysisTests/coordinates/test_lammps.py::TestLAMMPSDATAWriter_molecule_tag::test_molecule_tag[LAMMPSDATAWriter_molecule_tag3] PASSED [ 11%] 399s testsuite/MDAnalysisTests/coordinates/test_lammps.py::TestLAMMPSDATAWriter_molecule_tag::test_molecule_tag[LAMMPSDATAWriter_molecule_tag4] PASSED [ 11%] 399s testsuite/MDAnalysisTests/coordinates/test_lammps.py::test_datawriter_universe[out.data] PASSED [ 11%] 399s testsuite/MDAnalysisTests/coordinates/test_lammps.py::test_datawriter_universe[out.data.bz2] PASSED [ 11%] 399s testsuite/MDAnalysisTests/coordinates/test_lammps.py::test_datawriter_universe[out.data.gz] PASSED [ 11%] 399s testsuite/MDAnalysisTests/coordinates/test_lammps.py::TestLAMMPSDATAWriter_data_partial::test_Writer_atoms[masses] PASSED [ 11%] 399s testsuite/MDAnalysisTests/coordinates/test_lammps.py::TestLAMMPSDATAWriter_data_partial::test_Writer_atoms[charges] PASSED [ 11%] 400s testsuite/MDAnalysisTests/coordinates/test_lammps.py::TestLAMMPSDATAWriter_data_partial::test_Writer_atoms[velocities] PASSED [ 11%] 400s testsuite/MDAnalysisTests/coordinates/test_lammps.py::TestLAMMPSDATAWriter_data_partial::test_Writer_atoms[positions] PASSED [ 11%] 401s testsuite/MDAnalysisTests/coordinates/test_lammps.py::TestLAMMPSDATAWriter_data_partial::test_n_bonds PASSED [ 11%] 401s testsuite/MDAnalysisTests/coordinates/test_lammps.py::TestLAMMPSDATAWriter_data_partial::test_n_angles PASSED [ 11%] 401s testsuite/MDAnalysisTests/coordinates/test_lammps.py::TestLAMMPSDCDReader::test_Reader_is_LAMMPS PASSED [ 11%] 401s testsuite/MDAnalysisTests/coordinates/test_lammps.py::TestLAMMPSDCDReader::test_n_atoms PASSED [ 11%] 401s testsuite/MDAnalysisTests/coordinates/test_lammps.py::TestLAMMPSDCDReader::test_n_frames PASSED [ 11%] 401s testsuite/MDAnalysisTests/coordinates/test_lammps.py::TestLAMMPSDCDReader::test_dimensions PASSED [ 11%] 401s testsuite/MDAnalysisTests/coordinates/test_lammps.py::TestLAMMPSDCDReader::test_LAMMPSDCDReader_set_dt PASSED [ 11%] 401s testsuite/MDAnalysisTests/coordinates/test_lammps.py::TestLAMMPSDCDReader::test_wrong_time_unit PASSED [ 11%] 402s testsuite/MDAnalysisTests/coordinates/test_lammps.py::TestLAMMPSDCDReader::test_wrong_unit PASSED [ 11%] 402s testsuite/MDAnalysisTests/coordinates/test_lammps.py::TestLAMMPSDCDWriter::test_Writer_is_LAMMPS PASSED [ 11%] 402s testsuite/MDAnalysisTests/coordinates/test_lammps.py::TestLAMMPSDCDWriter::test_Writer PASSED [ 11%] 402s testsuite/MDAnalysisTests/coordinates/test_lammps.py::TestLAMMPSDCDWriter::test_OtherWriter_is_LAMMPS PASSED [ 11%] 402s testsuite/MDAnalysisTests/coordinates/test_lammps.py::TestLAMMPSDCDWriter::test_OtherWriter PASSED [ 11%] 402s testsuite/MDAnalysisTests/coordinates/test_lammps.py::TestLAMMPSDCDWriterClass::test_Writer_is_LAMMPS PASSED [ 11%] 402s testsuite/MDAnalysisTests/coordinates/test_lammps.py::TestLAMMPSDCDWriterClass::test_open PASSED [ 11%] 402s testsuite/MDAnalysisTests/coordinates/test_lammps.py::TestLAMMPSDCDWriterClass::test_wrong_time_unit PASSED [ 11%] 402s testsuite/MDAnalysisTests/coordinates/test_lammps.py::TestLAMMPSDCDWriterClass::test_wrong_unit PASSED [ 11%] 402s testsuite/MDAnalysisTests/coordinates/test_lammps.py::test_triclinicness PASSED [ 11%] 402s testsuite/MDAnalysisTests/coordinates/test_lammps.py::TestDataWriterErrors::test_write_no_masses PASSED [ 11%] 402s testsuite/MDAnalysisTests/coordinates/test_lammps.py::TestDataWriterErrors::test_write_no_types PASSED [ 11%] 402s testsuite/MDAnalysisTests/coordinates/test_lammps.py::TestDataWriterErrors::test_write_non_numerical_types PASSED [ 11%] 402s testsuite/MDAnalysisTests/coordinates/test_lammps.py::TestLammpsDumpReader::test_n_atoms[ascii] PASSED [ 11%] 402s testsuite/MDAnalysisTests/coordinates/test_lammps.py::TestLammpsDumpReader::test_n_atoms[bz2] PASSED [ 11%] 402s testsuite/MDAnalysisTests/coordinates/test_lammps.py::TestLammpsDumpReader::test_n_atoms[gzip] PASSED [ 11%] 402s testsuite/MDAnalysisTests/coordinates/test_lammps.py::TestLammpsDumpReader::test_length[ascii] PASSED [ 11%] 402s testsuite/MDAnalysisTests/coordinates/test_lammps.py::TestLammpsDumpReader::test_length[bz2] PASSED [ 11%] 402s testsuite/MDAnalysisTests/coordinates/test_lammps.py::TestLammpsDumpReader::test_length[gzip] PASSED [ 11%] 402s testsuite/MDAnalysisTests/coordinates/test_lammps.py::TestLammpsDumpReader::test_seeking[ascii] PASSED [ 11%] 402s testsuite/MDAnalysisTests/coordinates/test_lammps.py::TestLammpsDumpReader::test_seeking[bz2] PASSED [ 11%] 402s testsuite/MDAnalysisTests/coordinates/test_lammps.py::TestLammpsDumpReader::test_seeking[gzip] PASSED [ 11%] 402s testsuite/MDAnalysisTests/coordinates/test_lammps.py::TestLammpsDumpReader::test_boxsize[ascii] PASSED [ 11%] 402s testsuite/MDAnalysisTests/coordinates/test_lammps.py::TestLammpsDumpReader::test_boxsize[bz2] PASSED [ 11%] 402s testsuite/MDAnalysisTests/coordinates/test_lammps.py::TestLammpsDumpReader::test_boxsize[gzip] PASSED [ 11%] 402s testsuite/MDAnalysisTests/coordinates/test_lammps.py::TestLammpsDumpReader::test_atom_reordering[ascii] PASSED [ 11%] 402s testsuite/MDAnalysisTests/coordinates/test_lammps.py::TestLammpsDumpReader::test_atom_reordering[bz2] PASSED [ 11%] 402s testsuite/MDAnalysisTests/coordinates/test_lammps.py::TestLammpsDumpReader::test_atom_reordering[gzip] PASSED [ 11%] 402s testsuite/MDAnalysisTests/coordinates/test_lammps.py::test_open_absent_convention_fails[unscaled] PASSED [ 11%] 402s testsuite/MDAnalysisTests/coordinates/test_lammps.py::test_open_absent_convention_fails[unwrapped] PASSED [ 11%] 402s testsuite/MDAnalysisTests/coordinates/test_lammps.py::test_open_absent_convention_fails[scaled_unwrapped] PASSED [ 11%] 402s testsuite/MDAnalysisTests/coordinates/test_lammps.py::test_open_incorrect_convention_fails PASSED [ 11%] 403s testsuite/MDAnalysisTests/coordinates/test_lammps.py::test_open_all_convention[auto-unscaled] PASSED [ 11%] 403s testsuite/MDAnalysisTests/coordinates/test_lammps.py::test_open_all_convention[unscaled-unscaled] PASSED [ 11%] 403s testsuite/MDAnalysisTests/coordinates/test_lammps.py::test_open_all_convention[scaled-scaled] PASSED [ 11%] 404s testsuite/MDAnalysisTests/coordinates/test_lammps.py::test_open_all_convention[unwrapped-unwrapped] PASSED [ 11%] 404s testsuite/MDAnalysisTests/coordinates/test_lammps.py::test_open_all_convention[scaled_unwrapped-scaled_unwrapped] PASSED [ 11%] 404s testsuite/MDAnalysisTests/coordinates/test_lammps.py::test_no_coordinate_info PASSED [ 11%] 407s testsuite/MDAnalysisTests/coordinates/test_lammps.py::TestCoordinateMatches::test_unscaled_reference PASSED [ 11%] 409s testsuite/MDAnalysisTests/coordinates/test_lammps.py::TestCoordinateMatches::test_scaled_reference PASSED [ 11%] 411s testsuite/MDAnalysisTests/coordinates/test_lammps.py::TestCoordinateMatches::test_unwrapped_scaled_reference PASSED [ 11%] 414s testsuite/MDAnalysisTests/coordinates/test_lammps.py::TestCoordinateMatches::test_scaled_unscaled_match PASSED [ 11%] 418s testsuite/MDAnalysisTests/coordinates/test_lammps.py::TestCoordinateMatches::test_unwrapped_scaled_unwrapped_match PASSED [ 11%] 420s testsuite/MDAnalysisTests/coordinates/test_lammps.py::TestCoordinateMatches::test_auto_is_unscaled_match PASSED [ 11%] 420s testsuite/MDAnalysisTests/coordinates/test_lammps.py::TestLammpsTriclinic::test_box PASSED [ 11%] 421s testsuite/MDAnalysisTests/coordinates/test_memory.py::TestMemoryReader::test_n_atoms PASSED [ 11%] 421s testsuite/MDAnalysisTests/coordinates/test_memory.py::TestMemoryReader::test_n_frames PASSED [ 11%] 421s testsuite/MDAnalysisTests/coordinates/test_memory.py::TestMemoryReader::test_first_frame PASSED [ 11%] 421s testsuite/MDAnalysisTests/coordinates/test_memory.py::TestMemoryReader::test_double_close PASSED [ 11%] 421s testsuite/MDAnalysisTests/coordinates/test_memory.py::TestMemoryReader::test_ts_dt_matches_reader PASSED [ 11%] 421s testsuite/MDAnalysisTests/coordinates/test_memory.py::TestMemoryReader::test_first_dimensions PASSED [ 11%] 421s testsuite/MDAnalysisTests/coordinates/test_memory.py::TestMemoryReader::test_changing_dimensions PASSED [ 11%] 421s testsuite/MDAnalysisTests/coordinates/test_memory.py::TestMemoryReader::test_volume PASSED [ 11%] 421s testsuite/MDAnalysisTests/coordinates/test_memory.py::TestMemoryReader::test_add_same_auxname_raises_ValueError PASSED [ 11%] 421s testsuite/MDAnalysisTests/coordinates/test_memory.py::TestMemoryReader::test_remove_auxiliary PASSED [ 11%] 421s testsuite/MDAnalysisTests/coordinates/test_memory.py::TestMemoryReader::test_remove_nonexistant_auxiliary_raises_ValueError PASSED [ 11%] 421s testsuite/MDAnalysisTests/coordinates/test_memory.py::TestMemoryReader::test_get_aux_attribute PASSED [ 11%] 422s testsuite/MDAnalysisTests/coordinates/test_memory.py::TestMemoryReader::test_reload_auxiliaries_from_description PASSED [ 11%] 422s testsuite/MDAnalysisTests/coordinates/test_memory.py::TestMemoryReader::test_stop_iter PASSED [ 11%] 422s testsuite/MDAnalysisTests/coordinates/test_memory.py::TestMemoryReader::test_transformations_iter PASSED [ 11%] 422s testsuite/MDAnalysisTests/coordinates/test_memory.py::TestMemoryReader::test_transformations_2iter PASSED [ 11%] 423s testsuite/MDAnalysisTests/coordinates/test_memory.py::TestMemoryReader::test_transformations_slice PASSED [ 11%] 423s testsuite/MDAnalysisTests/coordinates/test_memory.py::TestMemoryReader::test_transformations_switch_frame PASSED [ 11%] 423s testsuite/MDAnalysisTests/coordinates/test_memory.py::TestMemoryReader::test_transformation_rewind PASSED [ 11%] 424s testsuite/MDAnalysisTests/coordinates/test_memory.py::TestMemoryReader::test_transformations_copy PASSED [ 11%] 424s testsuite/MDAnalysisTests/coordinates/test_memory.py::TestMemoryReader::test_add_another_transformations_raises_ValueError PASSED [ 11%] 424s testsuite/MDAnalysisTests/coordinates/test_memory.py::TestMemoryReader::test_pickle_reader PASSED [ 11%] 424s testsuite/MDAnalysisTests/coordinates/test_memory.py::TestMemoryReader::test_frame_collect_all_same XFAIL [ 11%] 424s testsuite/MDAnalysisTests/coordinates/test_memory.py::TestMemoryReader::test_go_over_last_frame PASSED [ 11%] 424s testsuite/MDAnalysisTests/coordinates/test_memory.py::TestMemoryReader::test_reopen PASSED [ 11%] 424s testsuite/MDAnalysisTests/coordinates/test_memory.py::TestMemoryReader::test_pickle_next_ts_reader PASSED [ 11%] 424s testsuite/MDAnalysisTests/coordinates/test_memory.py::TestMemoryReader::test_pickle_last_ts_reader PASSED [ 11%] 424s testsuite/MDAnalysisTests/coordinates/test_memory.py::TestMemoryReader::test_filename_transefer_to_memory PASSED [ 11%] 425s testsuite/MDAnalysisTests/coordinates/test_memory.py::TestMemoryReader::test_filename_array PASSED [ 11%] 425s testsuite/MDAnalysisTests/coordinates/test_memory.py::TestMemoryReader::test_default_memory_layout PASSED [ 11%] 425s testsuite/MDAnalysisTests/coordinates/test_memory.py::TestMemoryReader::test_extract_array_afc PASSED [ 11%] 425s testsuite/MDAnalysisTests/coordinates/test_memory.py::TestMemoryReader::test_extract_array_fac PASSED [ 11%] 425s testsuite/MDAnalysisTests/coordinates/test_memory.py::TestMemoryReader::test_extract_array_cfa PASSED [ 11%] 425s testsuite/MDAnalysisTests/coordinates/test_memory.py::TestMemoryReader::test_extract_array_acf PASSED [ 11%] 425s testsuite/MDAnalysisTests/coordinates/test_memory.py::TestMemoryReader::test_extract_array_fca PASSED [ 11%] 425s testsuite/MDAnalysisTests/coordinates/test_memory.py::TestMemoryReader::test_extract_array_caf PASSED [ 11%] 425s testsuite/MDAnalysisTests/coordinates/test_memory.py::TestMemoryReader::test_repr PASSED [ 11%] 425s testsuite/MDAnalysisTests/coordinates/test_memory.py::TestMemoryReader::test_get_writer_1 PASSED [ 11%] 425s testsuite/MDAnalysisTests/coordinates/test_memory.py::TestMemoryReader::test_get_writer_2 PASSED [ 11%] 425s testsuite/MDAnalysisTests/coordinates/test_memory.py::TestMemoryReader::test_float32 PASSED [ 11%] 425s testsuite/MDAnalysisTests/coordinates/test_memory.py::TestMemoryReader::test_position_assignation PASSED [ 11%] 425s testsuite/MDAnalysisTests/coordinates/test_memory.py::TestMemoryReaderVelsForces::test_velocities[2d-2d] PASSED [ 11%] 425s testsuite/MDAnalysisTests/coordinates/test_memory.py::TestMemoryReaderVelsForces::test_velocities[2d-3d] PASSED [ 11%] 425s testsuite/MDAnalysisTests/coordinates/test_memory.py::TestMemoryReaderVelsForces::test_velocities[3d-2d] PASSED [ 11%] 425s testsuite/MDAnalysisTests/coordinates/test_memory.py::TestMemoryReaderVelsForces::test_velocities[3d-3d] PASSED [ 11%] 425s testsuite/MDAnalysisTests/coordinates/test_memory.py::TestMemoryReaderVelsForces::test_forces[2d-2d] PASSED [ 11%] 426s testsuite/MDAnalysisTests/coordinates/test_memory.py::TestMemoryReaderVelsForces::test_forces[2d-3d] PASSED [ 12%] 426s testsuite/MDAnalysisTests/coordinates/test_memory.py::TestMemoryReaderVelsForces::test_forces[3d-2d] PASSED [ 12%] 426s testsuite/MDAnalysisTests/coordinates/test_memory.py::TestMemoryReaderVelsForces::test_forces[3d-3d] PASSED [ 12%] 426s testsuite/MDAnalysisTests/coordinates/test_memory.py::TestMemoryReaderVelsForces::test_both[2d-2d-2d] PASSED [ 12%] 426s testsuite/MDAnalysisTests/coordinates/test_memory.py::TestMemoryReaderVelsForces::test_both[2d-2d-3d] PASSED [ 12%] 426s testsuite/MDAnalysisTests/coordinates/test_memory.py::TestMemoryReaderVelsForces::test_both[2d-3d-2d] PASSED [ 12%] 426s testsuite/MDAnalysisTests/coordinates/test_memory.py::TestMemoryReaderVelsForces::test_both[2d-3d-3d] PASSED [ 12%] 426s testsuite/MDAnalysisTests/coordinates/test_memory.py::TestMemoryReaderVelsForces::test_both[3d-2d-2d] PASSED [ 12%] 426s testsuite/MDAnalysisTests/coordinates/test_memory.py::TestMemoryReaderVelsForces::test_both[3d-2d-3d] PASSED [ 12%] 426s testsuite/MDAnalysisTests/coordinates/test_memory.py::TestMemoryReaderVelsForces::test_both[3d-3d-2d] PASSED [ 12%] 426s testsuite/MDAnalysisTests/coordinates/test_memory.py::TestMemoryReaderVelsForces::test_both[3d-3d-3d] PASSED [ 12%] 426s testsuite/MDAnalysisTests/coordinates/test_memory.py::TestMemoryReaderVelsForces::test_wrongshape[2d-velocities] PASSED [ 12%] 426s testsuite/MDAnalysisTests/coordinates/test_memory.py::TestMemoryReaderVelsForces::test_wrongshape[2d-forces] PASSED [ 12%] 426s testsuite/MDAnalysisTests/coordinates/test_memory.py::TestMemoryReaderVelsForces::test_wrongshape[3d-velocities] PASSED [ 12%] 426s testsuite/MDAnalysisTests/coordinates/test_memory.py::TestMemoryReaderVelsForces::test_wrongshape[3d-forces] PASSED [ 12%] 426s testsuite/MDAnalysisTests/coordinates/test_memory.py::TestDimensions::test_single_box PASSED [ 12%] 426s testsuite/MDAnalysisTests/coordinates/test_memory.py::TestDimensions::test_varying_box PASSED [ 12%] 426s testsuite/MDAnalysisTests/coordinates/test_memory.py::TestDimensions::test_wrong_length PASSED [ 12%] 426s testsuite/MDAnalysisTests/coordinates/test_memory.py::TestDimensions::test_wrong_shape PASSED [ 12%] 426s testsuite/MDAnalysisTests/coordinates/test_memory.py::TestMemoryReaderModifications::test_copying[positions] PASSED [ 12%] 426s testsuite/MDAnalysisTests/coordinates/test_memory.py::TestMemoryReaderModifications::test_copying[velocities] PASSED [ 12%] 426s testsuite/MDAnalysisTests/coordinates/test_memory.py::TestMemoryReaderModifications::test_copying[forces] PASSED [ 12%] 426s testsuite/MDAnalysisTests/coordinates/test_memory.py::TestMemoryReaderModifications::test_copying[dimensions] PASSED [ 12%] 426s testsuite/MDAnalysisTests/coordinates/test_memory.py::TestMemoryReaderModifications::test_attr_set[positions] PASSED [ 12%] 426s testsuite/MDAnalysisTests/coordinates/test_memory.py::TestMemoryReaderModifications::test_attr_set[velocities] PASSED [ 12%] 426s testsuite/MDAnalysisTests/coordinates/test_memory.py::TestMemoryReaderModifications::test_attr_set[forces] PASSED [ 12%] 426s testsuite/MDAnalysisTests/coordinates/test_memory.py::TestMemoryReaderModifications::test_attr_set[dimensions] PASSED [ 12%] 426s testsuite/MDAnalysisTests/coordinates/test_memory.py::TestMemoryReaderModifications::test_non_numpy_arr[velocities] PASSED [ 12%] 426s testsuite/MDAnalysisTests/coordinates/test_memory.py::TestMemoryReaderModifications::test_non_numpy_arr[forces] PASSED [ 12%] 426s testsuite/MDAnalysisTests/coordinates/test_memory.py::TestMemoryReaderModifications::test_non_numpy_arr[dimensions] PASSED [ 12%] 426s testsuite/MDAnalysisTests/coordinates/test_mmtf.py::TestMMTFReader::test_read_frame_size PASSED [ 12%] 426s testsuite/MDAnalysisTests/coordinates/test_mmtf.py::TestMMTFReader::test_read_positions PASSED [ 12%] 426s testsuite/MDAnalysisTests/coordinates/test_mmtf.py::TestMMTFReader::test_velocities PASSED [ 12%] 426s testsuite/MDAnalysisTests/coordinates/test_mmtf.py::TestMMTFReader::test_forces PASSED [ 12%] 426s testsuite/MDAnalysisTests/coordinates/test_mmtf.py::TestMMTFReader::test_len PASSED [ 12%] 426s testsuite/MDAnalysisTests/coordinates/test_mmtf.py::TestMMTFReaderGZ::test_read_frame_size PASSED [ 12%] 426s testsuite/MDAnalysisTests/coordinates/test_mmtf.py::TestMMTFReaderGZ::test_read_positions PASSED [ 12%] 426s testsuite/MDAnalysisTests/coordinates/test_mmtf.py::TestMMTFReaderGZ::test_velocities PASSED [ 12%] 426s testsuite/MDAnalysisTests/coordinates/test_mmtf.py::TestMMTFReaderGZ::test_forces PASSED [ 12%] 426s testsuite/MDAnalysisTests/coordinates/test_mmtf.py::TestMMTFReaderGZ::test_len PASSED [ 12%] 426s testsuite/MDAnalysisTests/coordinates/test_mmtf.py::test_dimensionless PASSED [ 12%] 426s testsuite/MDAnalysisTests/coordinates/test_mol2.py::TestMol2::test_read PASSED [ 12%] 426s testsuite/MDAnalysisTests/coordinates/test_mol2.py::TestMol2::test_read_statusbit PASSED [ 12%] 426s testsuite/MDAnalysisTests/coordinates/test_mol2.py::TestMol2::test_write PASSED [ 12%] 426s testsuite/MDAnalysisTests/coordinates/test_mol2.py::TestMol2::test_write_selection PASSED [ 12%] 426s testsuite/MDAnalysisTests/coordinates/test_mol2.py::TestMol2::test_write_in_loop PASSED [ 12%] 426s testsuite/MDAnalysisTests/coordinates/test_mol2.py::TestMol2::test_broken_molecule PASSED [ 12%] 426s testsuite/MDAnalysisTests/coordinates/test_mol2.py::TestMol2::test_comments_header PASSED [ 12%] 426s testsuite/MDAnalysisTests/coordinates/test_mol2.py::TestMol2::test_no_bonds PASSED [ 12%] 426s testsuite/MDAnalysisTests/coordinates/test_mol2.py::TestMol2_traj::test_jump_lastframe_traj PASSED [ 12%] 426s testsuite/MDAnalysisTests/coordinates/test_mol2.py::TestMol2_traj::test_jump_traj PASSED [ 12%] 426s testsuite/MDAnalysisTests/coordinates/test_mol2.py::TestMol2_traj::test_n_frames PASSED [ 12%] 426s testsuite/MDAnalysisTests/coordinates/test_mol2.py::TestMol2_traj::test_next_traj PASSED [ 12%] 426s testsuite/MDAnalysisTests/coordinates/test_mol2.py::TestMol2_traj::test_reverse_traj PASSED [ 12%] 426s testsuite/MDAnalysisTests/coordinates/test_mol2.py::TestMol2_traj::test_rewind_traj PASSED [ 12%] 426s testsuite/MDAnalysisTests/coordinates/test_mol2.py::TestMol2_traj::test_slice_traj PASSED [ 12%] 426s testsuite/MDAnalysisTests/coordinates/test_mol2.py::TestMOL2NoSubstructure::test_load PASSED [ 12%] 426s testsuite/MDAnalysisTests/coordinates/test_mol2.py::TestMOL2NoSubstructure::test_universe PASSED [ 12%] 426s testsuite/MDAnalysisTests/coordinates/test_mol2.py::TestMOL2NoSubstructure::test_write_nostructure PASSED [ 12%] 426s testsuite/MDAnalysisTests/coordinates/test_mol2.py::test_mol2_write_NIE PASSED [ 12%] 426s testsuite/MDAnalysisTests/coordinates/test_mol2.py::test_mol2_multi_write PASSED [ 12%] 426s testsuite/MDAnalysisTests/coordinates/test_mol2.py::test_mol2_universe_write PASSED [ 12%] 426s testsuite/MDAnalysisTests/coordinates/test_netcdf.py::TestNCDFReader::test_load_prm PASSED [ 12%] 426s testsuite/MDAnalysisTests/coordinates/test_netcdf.py::TestNCDFReader::test_n_atoms PASSED [ 12%] 426s testsuite/MDAnalysisTests/coordinates/test_netcdf.py::TestNCDFReader::test_n_frames PASSED [ 12%] 426s testsuite/MDAnalysisTests/coordinates/test_netcdf.py::TestNCDFReader::test_periodic PASSED [ 12%] 426s testsuite/MDAnalysisTests/coordinates/test_netcdf.py::TestNCDFReader::test_amber_proteinselection PASSED [ 12%] 426s testsuite/MDAnalysisTests/coordinates/test_netcdf.py::TestNCDFReader::test_sum_centres_of_geometry PASSED [ 12%] 426s testsuite/MDAnalysisTests/coordinates/test_netcdf.py::TestNCDFReader::test_initial_frame_is_0 PASSED [ 12%] 426s testsuite/MDAnalysisTests/coordinates/test_netcdf.py::TestNCDFReader::test_starts_with_first_frame PASSED [ 12%] 426s testsuite/MDAnalysisTests/coordinates/test_netcdf.py::TestNCDFReader::test_rewind PASSED [ 12%] 426s testsuite/MDAnalysisTests/coordinates/test_netcdf.py::TestNCDFReader::test_full_slice PASSED [ 12%] 426s testsuite/MDAnalysisTests/coordinates/test_netcdf.py::TestNCDFReader::test_random_access PASSED [ 12%] 426s testsuite/MDAnalysisTests/coordinates/test_netcdf.py::TestNCDFReader::test_slice_iteration PASSED [ 12%] 426s testsuite/MDAnalysisTests/coordinates/test_netcdf.py::TestNCDFReader::test_metadata PASSED [ 12%] 426s testsuite/MDAnalysisTests/coordinates/test_netcdf.py::TestNCDFReader::test_get_writer PASSED [ 12%] 426s testsuite/MDAnalysisTests/coordinates/test_netcdf.py::TestNCDFReader::test_get_writer_custom_n_atoms PASSED [ 12%] 426s testsuite/MDAnalysisTests/coordinates/test_netcdf.py::TestNCDFReader::test_wrong_natoms PASSED [ 12%] 426s testsuite/MDAnalysisTests/coordinates/test_netcdf.py::TestNCDFReader::test_read_on_closed PASSED [ 12%] 426s testsuite/MDAnalysisTests/coordinates/test_netcdf.py::TestNCDFReader::test_mmap_kwarg PASSED [ 12%] 426s testsuite/MDAnalysisTests/coordinates/test_netcdf.py::TestNCDFReader_mmap_None::test_load_prm PASSED [ 12%] 427s testsuite/MDAnalysisTests/coordinates/test_netcdf.py::TestNCDFReader_mmap_None::test_n_atoms PASSED [ 12%] 427s testsuite/MDAnalysisTests/coordinates/test_netcdf.py::TestNCDFReader_mmap_None::test_n_frames PASSED [ 12%] 427s testsuite/MDAnalysisTests/coordinates/test_netcdf.py::TestNCDFReader_mmap_None::test_periodic PASSED [ 12%] 427s testsuite/MDAnalysisTests/coordinates/test_netcdf.py::TestNCDFReader_mmap_None::test_amber_proteinselection PASSED [ 12%] 427s testsuite/MDAnalysisTests/coordinates/test_netcdf.py::TestNCDFReader_mmap_None::test_sum_centres_of_geometry PASSED [ 12%] 427s testsuite/MDAnalysisTests/coordinates/test_netcdf.py::TestNCDFReader_mmap_None::test_initial_frame_is_0 PASSED [ 12%] 427s testsuite/MDAnalysisTests/coordinates/test_netcdf.py::TestNCDFReader_mmap_None::test_starts_with_first_frame PASSED [ 12%] 427s testsuite/MDAnalysisTests/coordinates/test_netcdf.py::TestNCDFReader_mmap_None::test_rewind PASSED [ 12%] 427s testsuite/MDAnalysisTests/coordinates/test_netcdf.py::TestNCDFReader_mmap_None::test_full_slice PASSED [ 12%] 427s testsuite/MDAnalysisTests/coordinates/test_netcdf.py::TestNCDFReader_mmap_None::test_random_access PASSED [ 12%] 427s testsuite/MDAnalysisTests/coordinates/test_netcdf.py::TestNCDFReader_mmap_None::test_slice_iteration PASSED [ 12%] 427s testsuite/MDAnalysisTests/coordinates/test_netcdf.py::TestNCDFReader_mmap_None::test_metadata PASSED [ 12%] 427s testsuite/MDAnalysisTests/coordinates/test_netcdf.py::TestNCDFReader_mmap_None::test_get_writer PASSED [ 12%] 427s testsuite/MDAnalysisTests/coordinates/test_netcdf.py::TestNCDFReader_mmap_None::test_get_writer_custom_n_atoms PASSED [ 12%] 427s testsuite/MDAnalysisTests/coordinates/test_netcdf.py::TestNCDFReader_mmap_None::test_wrong_natoms PASSED [ 12%] 427s testsuite/MDAnalysisTests/coordinates/test_netcdf.py::TestNCDFReader_mmap_None::test_read_on_closed PASSED [ 12%] 427s testsuite/MDAnalysisTests/coordinates/test_netcdf.py::TestNCDFReader_mmap_None::test_mmap_kwarg PASSED [ 12%] 427s testsuite/MDAnalysisTests/coordinates/test_netcdf.py::TestNCDFReader_mmap_True::test_load_prm PASSED [ 12%] 427s testsuite/MDAnalysisTests/coordinates/test_netcdf.py::TestNCDFReader_mmap_True::test_n_atoms PASSED [ 12%] 427s testsuite/MDAnalysisTests/coordinates/test_netcdf.py::TestNCDFReader_mmap_True::test_n_frames PASSED [ 12%] 427s testsuite/MDAnalysisTests/coordinates/test_netcdf.py::TestNCDFReader_mmap_True::test_periodic PASSED [ 12%] 427s testsuite/MDAnalysisTests/coordinates/test_netcdf.py::TestNCDFReader_mmap_True::test_amber_proteinselection PASSED [ 12%] 427s testsuite/MDAnalysisTests/coordinates/test_netcdf.py::TestNCDFReader_mmap_True::test_sum_centres_of_geometry PASSED [ 12%] 427s testsuite/MDAnalysisTests/coordinates/test_netcdf.py::TestNCDFReader_mmap_True::test_initial_frame_is_0 PASSED [ 12%] 427s testsuite/MDAnalysisTests/coordinates/test_netcdf.py::TestNCDFReader_mmap_True::test_starts_with_first_frame PASSED [ 12%] 427s testsuite/MDAnalysisTests/coordinates/test_netcdf.py::TestNCDFReader_mmap_True::test_rewind PASSED [ 12%] 427s testsuite/MDAnalysisTests/coordinates/test_netcdf.py::TestNCDFReader_mmap_True::test_full_slice PASSED [ 12%] 427s testsuite/MDAnalysisTests/coordinates/test_netcdf.py::TestNCDFReader_mmap_True::test_random_access PASSED [ 12%] 427s testsuite/MDAnalysisTests/coordinates/test_netcdf.py::TestNCDFReader_mmap_True::test_slice_iteration PASSED [ 12%] 427s testsuite/MDAnalysisTests/coordinates/test_netcdf.py::TestNCDFReader_mmap_True::test_metadata PASSED [ 12%] 427s testsuite/MDAnalysisTests/coordinates/test_netcdf.py::TestNCDFReader_mmap_True::test_get_writer PASSED [ 12%] 427s testsuite/MDAnalysisTests/coordinates/test_netcdf.py::TestNCDFReader_mmap_True::test_get_writer_custom_n_atoms PASSED [ 12%] 427s testsuite/MDAnalysisTests/coordinates/test_netcdf.py::TestNCDFReader_mmap_True::test_wrong_natoms PASSED [ 12%] 427s testsuite/MDAnalysisTests/coordinates/test_netcdf.py::TestNCDFReader_mmap_True::test_read_on_closed PASSED [ 12%] 427s testsuite/MDAnalysisTests/coordinates/test_netcdf.py::TestNCDFReader_mmap_True::test_mmap_kwarg PASSED [ 12%] 427s testsuite/MDAnalysisTests/coordinates/test_netcdf.py::TestNCDFReader_mmap_False::test_load_prm PASSED [ 12%] 427s testsuite/MDAnalysisTests/coordinates/test_netcdf.py::TestNCDFReader_mmap_False::test_n_atoms PASSED [ 12%] 427s testsuite/MDAnalysisTests/coordinates/test_netcdf.py::TestNCDFReader_mmap_False::test_n_frames PASSED [ 12%] 427s testsuite/MDAnalysisTests/coordinates/test_netcdf.py::TestNCDFReader_mmap_False::test_periodic PASSED [ 12%] 427s testsuite/MDAnalysisTests/coordinates/test_netcdf.py::TestNCDFReader_mmap_False::test_amber_proteinselection PASSED [ 12%] 427s testsuite/MDAnalysisTests/coordinates/test_netcdf.py::TestNCDFReader_mmap_False::test_sum_centres_of_geometry PASSED [ 12%] 427s testsuite/MDAnalysisTests/coordinates/test_netcdf.py::TestNCDFReader_mmap_False::test_initial_frame_is_0 PASSED [ 12%] 427s testsuite/MDAnalysisTests/coordinates/test_netcdf.py::TestNCDFReader_mmap_False::test_starts_with_first_frame PASSED [ 12%] 427s testsuite/MDAnalysisTests/coordinates/test_netcdf.py::TestNCDFReader_mmap_False::test_rewind PASSED [ 12%] 427s testsuite/MDAnalysisTests/coordinates/test_netcdf.py::TestNCDFReader_mmap_False::test_full_slice PASSED [ 12%] 427s testsuite/MDAnalysisTests/coordinates/test_netcdf.py::TestNCDFReader_mmap_False::test_random_access PASSED [ 12%] 427s testsuite/MDAnalysisTests/coordinates/test_netcdf.py::TestNCDFReader_mmap_False::test_slice_iteration PASSED [ 12%] 427s testsuite/MDAnalysisTests/coordinates/test_netcdf.py::TestNCDFReader_mmap_False::test_metadata PASSED [ 12%] 427s testsuite/MDAnalysisTests/coordinates/test_netcdf.py::TestNCDFReader_mmap_False::test_get_writer PASSED [ 12%] 427s testsuite/MDAnalysisTests/coordinates/test_netcdf.py::TestNCDFReader_mmap_False::test_get_writer_custom_n_atoms PASSED [ 12%] 427s testsuite/MDAnalysisTests/coordinates/test_netcdf.py::TestNCDFReader_mmap_False::test_wrong_natoms PASSED [ 12%] 427s testsuite/MDAnalysisTests/coordinates/test_netcdf.py::TestNCDFReader_mmap_False::test_read_on_closed PASSED [ 12%] 427s testsuite/MDAnalysisTests/coordinates/test_netcdf.py::TestNCDFReader_mmap_False::test_mmap_kwarg PASSED [ 12%] 427s testsuite/MDAnalysisTests/coordinates/test_netcdf.py::TestNCDFReaderTZ2::test_load_prm PASSED [ 12%] 427s testsuite/MDAnalysisTests/coordinates/test_netcdf.py::TestNCDFReaderTZ2::test_n_atoms PASSED [ 12%] 427s testsuite/MDAnalysisTests/coordinates/test_netcdf.py::TestNCDFReaderTZ2::test_n_frames PASSED [ 12%] 428s testsuite/MDAnalysisTests/coordinates/test_netcdf.py::TestNCDFReaderTZ2::test_periodic PASSED [ 12%] 428s testsuite/MDAnalysisTests/coordinates/test_netcdf.py::TestNCDFReaderTZ2::test_amber_proteinselection PASSED [ 12%] 428s testsuite/MDAnalysisTests/coordinates/test_netcdf.py::TestNCDFReaderTZ2::test_sum_centres_of_geometry PASSED [ 12%] 428s testsuite/MDAnalysisTests/coordinates/test_netcdf.py::TestNCDFReaderTZ2::test_initial_frame_is_0 PASSED [ 12%] 428s testsuite/MDAnalysisTests/coordinates/test_netcdf.py::TestNCDFReaderTZ2::test_starts_with_first_frame PASSED [ 12%] 428s testsuite/MDAnalysisTests/coordinates/test_netcdf.py::TestNCDFReaderTZ2::test_rewind PASSED [ 12%] 428s testsuite/MDAnalysisTests/coordinates/test_netcdf.py::TestNCDFReaderTZ2::test_full_slice PASSED [ 12%] 428s testsuite/MDAnalysisTests/coordinates/test_netcdf.py::TestNCDFReaderTZ2::test_random_access PASSED [ 12%] 428s testsuite/MDAnalysisTests/coordinates/test_netcdf.py::TestNCDFReaderTZ2::test_slice_iteration PASSED [ 12%] 428s testsuite/MDAnalysisTests/coordinates/test_netcdf.py::TestNCDFReaderTZ2::test_metadata PASSED [ 12%] 428s testsuite/MDAnalysisTests/coordinates/test_netcdf.py::TestNCDFReaderTZ2::test_get_writer PASSED [ 12%] 429s testsuite/MDAnalysisTests/coordinates/test_netcdf.py::TestNCDFReaderTZ2::test_get_writer_custom_n_atoms PASSED [ 12%] 429s testsuite/MDAnalysisTests/coordinates/test_netcdf.py::TestNCDFReaderTZ2::test_wrong_natoms PASSED [ 12%] 429s testsuite/MDAnalysisTests/coordinates/test_netcdf.py::TestNCDFReaderTZ2::test_read_on_closed PASSED [ 12%] 429s testsuite/MDAnalysisTests/coordinates/test_netcdf.py::TestNCDFReaderTZ2::test_mmap_kwarg PASSED [ 12%] 429s testsuite/MDAnalysisTests/coordinates/test_netcdf.py::TestNCDFReader2::test_positions_1 PASSED [ 12%] 429s testsuite/MDAnalysisTests/coordinates/test_netcdf.py::TestNCDFReader2::test_positions_2 PASSED [ 12%] 429s testsuite/MDAnalysisTests/coordinates/test_netcdf.py::TestNCDFReader2::test_forces_1 PASSED [ 12%] 429s testsuite/MDAnalysisTests/coordinates/test_netcdf.py::TestNCDFReader2::test_forces_2 PASSED [ 12%] 429s testsuite/MDAnalysisTests/coordinates/test_netcdf.py::TestNCDFReader2::test_box PASSED [ 12%] 429s testsuite/MDAnalysisTests/coordinates/test_netcdf.py::TestNCDFReader3::test_positions[0-0] PASSED [ 12%] 429s testsuite/MDAnalysisTests/coordinates/test_netcdf.py::TestNCDFReader3::test_positions[8-1] PASSED [ 12%] 429s testsuite/MDAnalysisTests/coordinates/test_netcdf.py::TestNCDFReader3::test_forces[0-0] PASSED [ 12%] 429s testsuite/MDAnalysisTests/coordinates/test_netcdf.py::TestNCDFReader3::test_forces[8-1] PASSED [ 12%] 429s testsuite/MDAnalysisTests/coordinates/test_netcdf.py::TestNCDFReader3::test_velocities[0-0] PASSED [ 12%] 429s testsuite/MDAnalysisTests/coordinates/test_netcdf.py::TestNCDFReader3::test_velocities[8-1] PASSED [ 12%] 429s testsuite/MDAnalysisTests/coordinates/test_netcdf.py::TestNCDFReader3::test_nframes PASSED [ 12%] 429s testsuite/MDAnalysisTests/coordinates/test_netcdf.py::TestNCDFReader3::test_box[0-0] PASSED [ 12%] 429s testsuite/MDAnalysisTests/coordinates/test_netcdf.py::TestNCDFReader3::test_box[8-1] PASSED [ 12%] 429s testsuite/MDAnalysisTests/coordinates/test_netcdf.py::TestNCDFReader4::test_chain_times PASSED [ 12%] 429s testsuite/MDAnalysisTests/coordinates/test_netcdf.py::TestNCDFReader4::test_warn_user_no_time_information PASSED [ 12%] 429s testsuite/MDAnalysisTests/coordinates/test_netcdf.py::TestScaleFactorImplementation::test_scale_factor_coordinates PASSED [ 12%] 429s testsuite/MDAnalysisTests/coordinates/test_netcdf.py::TestScaleFactorImplementation::test_scale_factor_velocities PASSED [ 12%] 429s testsuite/MDAnalysisTests/coordinates/test_netcdf.py::TestScaleFactorImplementation::test_scale_factor_forces PASSED [ 12%] 429s testsuite/MDAnalysisTests/coordinates/test_netcdf.py::TestScaleFactorImplementation::test_scale_factor_box[mutation0-expected0] PASSED [ 12%] 429s testsuite/MDAnalysisTests/coordinates/test_netcdf.py::TestScaleFactorImplementation::test_scale_factor_box[mutation1-expected1] PASSED [ 12%] 429s testsuite/MDAnalysisTests/coordinates/test_netcdf.py::TestScaleFactorImplementation::test_scale_factor_not_float PASSED [ 12%] 429s testsuite/MDAnalysisTests/coordinates/test_netcdf.py::TestNCDFReaderExceptionsWarnings::test_type_errors[mutation0] PASSED [ 12%] 429s testsuite/MDAnalysisTests/coordinates/test_netcdf.py::TestNCDFReaderExceptionsWarnings::test_type_errors[mutation1] PASSED [ 12%] 429s testsuite/MDAnalysisTests/coordinates/test_netcdf.py::TestNCDFReaderExceptionsWarnings::test_type_errors[mutation2] PASSED [ 12%] 429s testsuite/MDAnalysisTests/coordinates/test_netcdf.py::TestNCDFReaderExceptionsWarnings::test_value_errors[mutation0] PASSED [ 12%] 429s testsuite/MDAnalysisTests/coordinates/test_netcdf.py::TestNCDFReaderExceptionsWarnings::test_value_errors[mutation1] PASSED [ 12%] 429s testsuite/MDAnalysisTests/coordinates/test_netcdf.py::TestNCDFReaderExceptionsWarnings::test_value_errors[mutation2] PASSED [ 12%] 429s testsuite/MDAnalysisTests/coordinates/test_netcdf.py::TestNCDFReaderExceptionsWarnings::test_value_errors[mutation3] PASSED [ 12%] 429s testsuite/MDAnalysisTests/coordinates/test_netcdf.py::TestNCDFReaderExceptionsWarnings::test_value_errors[mutation4] PASSED [ 12%] 429s testsuite/MDAnalysisTests/coordinates/test_netcdf.py::TestNCDFReaderExceptionsWarnings::test_notimplemented_errors[mutation0] PASSED [ 12%] 429s testsuite/MDAnalysisTests/coordinates/test_netcdf.py::TestNCDFReaderExceptionsWarnings::test_notimplemented_errors[mutation1] PASSED [ 12%] 429s testsuite/MDAnalysisTests/coordinates/test_netcdf.py::TestNCDFReaderExceptionsWarnings::test_notimplemented_errors[mutation2] PASSED [ 12%] 429s testsuite/MDAnalysisTests/coordinates/test_netcdf.py::TestNCDFReaderExceptionsWarnings::test_notimplemented_errors[mutation3] PASSED [ 13%] 429s testsuite/MDAnalysisTests/coordinates/test_netcdf.py::TestNCDFReaderExceptionsWarnings::test_notimplemented_errors[mutation4] PASSED [ 13%] 429s testsuite/MDAnalysisTests/coordinates/test_netcdf.py::TestNCDFReaderExceptionsWarnings::test_notimplemented_errors[mutation5] PASSED [ 13%] 429s testsuite/MDAnalysisTests/coordinates/test_netcdf.py::TestNCDFReaderExceptionsWarnings::test_notimplemented_errors[mutation6] PASSED [ 13%] 429s testsuite/MDAnalysisTests/coordinates/test_netcdf.py::TestNCDFReaderExceptionsWarnings::test_verify_units_errors[yard-foot] PASSED [ 13%] 429s testsuite/MDAnalysisTests/coordinates/test_netcdf.py::TestNCDFReaderExceptionsWarnings::test_verify_units_errors[second-minute] PASSED [ 13%] 429s testsuite/MDAnalysisTests/coordinates/test_netcdf.py::TestNCDFReaderExceptionsWarnings::test_ioerror PASSED [ 13%] 429s testsuite/MDAnalysisTests/coordinates/test_netcdf.py::TestNCDFReaderExceptionsWarnings::test_conventionversion_warn PASSED [ 13%] 429s testsuite/MDAnalysisTests/coordinates/test_netcdf.py::TestNCDFReaderExceptionsWarnings::test_program_warn[mutation0] PASSED [ 13%] 429s testsuite/MDAnalysisTests/coordinates/test_netcdf.py::TestNCDFReaderExceptionsWarnings::test_program_warn[mutation1] PASSED [ 13%] 429s testsuite/MDAnalysisTests/coordinates/test_netcdf.py::TestNCDFReaderExceptionsWarnings::test_no_dt_warning PASSED [ 13%] 429s testsuite/MDAnalysisTests/coordinates/test_netcdf.py::TestNCDFWriter::test_write_trajectory_netCDF4 PASSED [ 13%] 429s testsuite/MDAnalysisTests/coordinates/test_netcdf.py::TestNCDFWriter::test_write_trajectory_netcdf PASSED [ 13%] 429s testsuite/MDAnalysisTests/coordinates/test_netcdf.py::TestNCDFWriter::test_OtherWriter[nc] PASSED [ 13%] 429s testsuite/MDAnalysisTests/coordinates/test_netcdf.py::TestNCDFWriter::test_OtherWriter[ncdf] PASSED [ 13%] 430s testsuite/MDAnalysisTests/coordinates/test_netcdf.py::TestNCDFWriter::test_TRR2NCDF PASSED [ 13%] 430s testsuite/MDAnalysisTests/coordinates/test_netcdf.py::TestNCDFWriter::test_write_AtomGroup PASSED [ 13%] 431s testsuite/MDAnalysisTests/coordinates/test_netcdf.py::TestNCDFWriterTZ2::test_write_trajectory_netCDF4 PASSED [ 13%] 431s testsuite/MDAnalysisTests/coordinates/test_netcdf.py::TestNCDFWriterTZ2::test_write_trajectory_netcdf PASSED [ 13%] 431s testsuite/MDAnalysisTests/coordinates/test_netcdf.py::TestNCDFWriterTZ2::test_OtherWriter[nc] PASSED [ 13%] 431s testsuite/MDAnalysisTests/coordinates/test_netcdf.py::TestNCDFWriterTZ2::test_OtherWriter[ncdf] PASSED [ 13%] 431s testsuite/MDAnalysisTests/coordinates/test_netcdf.py::TestNCDFWriterTZ2::test_TRR2NCDF PASSED [ 13%] 431s testsuite/MDAnalysisTests/coordinates/test_netcdf.py::TestNCDFWriterTZ2::test_write_AtomGroup PASSED [ 13%] 431s testsuite/MDAnalysisTests/coordinates/test_netcdf.py::TestNCDFWriterVelsForces::test_write_u[True-False-False] PASSED [ 13%] 431s testsuite/MDAnalysisTests/coordinates/test_netcdf.py::TestNCDFWriterVelsForces::test_write_u[True-True-False] PASSED [ 13%] 431s testsuite/MDAnalysisTests/coordinates/test_netcdf.py::TestNCDFWriterVelsForces::test_write_u[True-False-True] PASSED [ 13%] 431s testsuite/MDAnalysisTests/coordinates/test_netcdf.py::TestNCDFWriterVelsForces::test_write_u[True-True-True] PASSED [ 13%] 431s testsuite/MDAnalysisTests/coordinates/test_netcdf.py::TestNCDFWriterScaleFactors::test_write_read_factors_default PASSED [ 13%] 431s testsuite/MDAnalysisTests/coordinates/test_netcdf.py::TestNCDFWriterScaleFactors::test_write_bad_scale_factor PASSED [ 13%] 431s testsuite/MDAnalysisTests/coordinates/test_netcdf.py::TestNCDFWriterScaleFactors::test_write_read_write[-2.0--2.0--2.0--2.0--2.0--2.0] PASSED [ 13%] 432s testsuite/MDAnalysisTests/coordinates/test_netcdf.py::TestNCDFWriterScaleFactors::test_write_read_write[1.0-1.0-1.0-1.0-1.0-1.0] PASSED [ 13%] 432s testsuite/MDAnalysisTests/coordinates/test_netcdf.py::TestNCDFWriterScaleFactors::test_write_read_write[2.0-4.0-8.0-16.0-32.0-64.0] PASSED [ 13%] 432s testsuite/MDAnalysisTests/coordinates/test_netcdf.py::TestScipyScaleFactors::test_write_read_factors_default PASSED [ 13%] 432s testsuite/MDAnalysisTests/coordinates/test_netcdf.py::TestScipyScaleFactors::test_write_bad_scale_factor PASSED [ 13%] 432s testsuite/MDAnalysisTests/coordinates/test_netcdf.py::TestScipyScaleFactors::test_write_read_write[-2.0--2.0--2.0--2.0--2.0--2.0] PASSED [ 13%] 432s testsuite/MDAnalysisTests/coordinates/test_netcdf.py::TestScipyScaleFactors::test_write_read_write[1.0-1.0-1.0-1.0-1.0-1.0] PASSED [ 13%] 432s testsuite/MDAnalysisTests/coordinates/test_netcdf.py::TestScipyScaleFactors::test_write_read_write[2.0-4.0-8.0-16.0-32.0-64.0] PASSED [ 13%] 432s testsuite/MDAnalysisTests/coordinates/test_netcdf.py::TestScipyScaleFactors::test_ncdf4_not_present PASSED [ 13%] 432s testsuite/MDAnalysisTests/coordinates/test_netcdf.py::TestNCDFWriterUnits::test_writer_units[coordinates-angstrom] PASSED [ 13%] 432s testsuite/MDAnalysisTests/coordinates/test_netcdf.py::TestNCDFWriterUnits::test_writer_units[time-picosecond] PASSED [ 13%] 432s testsuite/MDAnalysisTests/coordinates/test_netcdf.py::TestNCDFWriterUnits::test_writer_units[cell_lengths-angstrom] PASSED [ 13%] 432s testsuite/MDAnalysisTests/coordinates/test_netcdf.py::TestNCDFWriterUnits::test_writer_units[cell_angles-degree] PASSED [ 13%] 432s testsuite/MDAnalysisTests/coordinates/test_netcdf.py::TestNCDFWriterUnits::test_writer_units[velocities-angstrom/picosecond] PASSED [ 13%] 432s testsuite/MDAnalysisTests/coordinates/test_netcdf.py::TestNCDFWriterUnits::test_writer_units[forces-kilocalorie/mole/angstrom] PASSED [ 13%] 432s testsuite/MDAnalysisTests/coordinates/test_netcdf.py::TestNCDFWriterErrorsWarnings::test_zero_atoms_VE PASSED [ 13%] 432s testsuite/MDAnalysisTests/coordinates/test_netcdf.py::TestNCDFWriterErrorsWarnings::test_wrong_n_atoms PASSED [ 13%] 432s testsuite/MDAnalysisTests/coordinates/test_null.py::test_NullWriter PASSED [ 13%] 432s testsuite/MDAnalysisTests/coordinates/test_pdb.py::TestPDBReader::test_ENT PASSED [ 13%] 432s testsuite/MDAnalysisTests/coordinates/test_pdb.py::TestPDBReader::test_coordinates PASSED [ 13%] 432s testsuite/MDAnalysisTests/coordinates/test_pdb.py::TestPDBReader::test_dimensions PASSED [ 13%] 432s testsuite/MDAnalysisTests/coordinates/test_pdb.py::TestPDBReader::test_distances PASSED [ 13%] 432s testsuite/MDAnalysisTests/coordinates/test_pdb.py::TestPDBReader::test_frame PASSED [ 13%] 432s testsuite/MDAnalysisTests/coordinates/test_pdb.py::TestPDBReader::test_frame_index_0 PASSED [ 13%] 432s testsuite/MDAnalysisTests/coordinates/test_pdb.py::TestPDBReader::test_frame_index_1_raises_IndexError PASSED [ 13%] 432s testsuite/MDAnalysisTests/coordinates/test_pdb.py::TestPDBReader::test_full_slice PASSED [ 13%] 433s testsuite/MDAnalysisTests/coordinates/test_pdb.py::TestPDBReader::test_last_slice PASSED [ 13%] 433s testsuite/MDAnalysisTests/coordinates/test_pdb.py::TestPDBReader::test_load_file PASSED [ 13%] 433s testsuite/MDAnalysisTests/coordinates/test_pdb.py::TestPDBReader::test_n_atoms PASSED [ 13%] 433s testsuite/MDAnalysisTests/coordinates/test_pdb.py::TestPDBReader::test_n_frames PASSED [ 13%] 433s testsuite/MDAnalysisTests/coordinates/test_pdb.py::TestPDBReader::test_numres PASSED [ 13%] 433s testsuite/MDAnalysisTests/coordinates/test_pdb.py::TestPDBReader::test_pickle_singleframe_reader PASSED [ 13%] 433s testsuite/MDAnalysisTests/coordinates/test_pdb.py::TestPDBReader::test_uses_PDBReader PASSED [ 13%] 433s testsuite/MDAnalysisTests/coordinates/test_pdb.py::TestPDBMetadata::test_HEADER PASSED [ 13%] 433s testsuite/MDAnalysisTests/coordinates/test_pdb.py::TestPDBMetadata::test_TITLE PASSED [ 13%] 433s testsuite/MDAnalysisTests/coordinates/test_pdb.py::TestPDBMetadata::test_COMPND PASSED [ 13%] 433s testsuite/MDAnalysisTests/coordinates/test_pdb.py::TestPDBMetadata::test_REMARK PASSED [ 13%] 433s testsuite/MDAnalysisTests/coordinates/test_pdb.py::TestExtendedPDBReader::test_coordinates PASSED [ 13%] 433s testsuite/MDAnalysisTests/coordinates/test_pdb.py::TestExtendedPDBReader::test_distances PASSED [ 13%] 433s testsuite/MDAnalysisTests/coordinates/test_pdb.py::TestExtendedPDBReader::test_frame PASSED [ 13%] 433s testsuite/MDAnalysisTests/coordinates/test_pdb.py::TestExtendedPDBReader::test_frame_index_0 PASSED [ 13%] 433s testsuite/MDAnalysisTests/coordinates/test_pdb.py::TestExtendedPDBReader::test_frame_index_1_raises_IndexError PASSED [ 13%] 433s testsuite/MDAnalysisTests/coordinates/test_pdb.py::TestExtendedPDBReader::test_full_slice PASSED [ 13%] 433s testsuite/MDAnalysisTests/coordinates/test_pdb.py::TestExtendedPDBReader::test_last_slice PASSED [ 13%] 433s testsuite/MDAnalysisTests/coordinates/test_pdb.py::TestExtendedPDBReader::test_load_file PASSED [ 13%] 433s testsuite/MDAnalysisTests/coordinates/test_pdb.py::TestExtendedPDBReader::test_long_resSeq PASSED [ 13%] 433s testsuite/MDAnalysisTests/coordinates/test_pdb.py::TestExtendedPDBReader::test_n_atoms PASSED [ 13%] 433s testsuite/MDAnalysisTests/coordinates/test_pdb.py::TestExtendedPDBReader::test_n_frames PASSED [ 13%] 433s testsuite/MDAnalysisTests/coordinates/test_pdb.py::TestExtendedPDBReader::test_numres PASSED [ 13%] 433s testsuite/MDAnalysisTests/coordinates/test_pdb.py::TestExtendedPDBReader::test_pickle_singleframe_reader PASSED [ 13%] 434s testsuite/MDAnalysisTests/coordinates/test_pdb.py::TestPDBWriter::test_writer PASSED [ 13%] 434s testsuite/MDAnalysisTests/coordinates/test_pdb.py::TestPDBWriter::test_writer_no_resnames PASSED [ 13%] 434s testsuite/MDAnalysisTests/coordinates/test_pdb.py::TestPDBWriter::test_writer_no_resids PASSED [ 13%] 434s testsuite/MDAnalysisTests/coordinates/test_pdb.py::TestPDBWriter::test_writer_no_atom_names PASSED [ 13%] 434s testsuite/MDAnalysisTests/coordinates/test_pdb.py::TestPDBWriter::test_writer_no_altlocs PASSED [ 13%] 434s testsuite/MDAnalysisTests/coordinates/test_pdb.py::TestPDBWriter::test_writer_no_icodes PASSED [ 13%] 434s testsuite/MDAnalysisTests/coordinates/test_pdb.py::TestPDBWriter::test_writer_no_segids PASSED [ 13%] 434s testsuite/MDAnalysisTests/coordinates/test_pdb.py::TestPDBWriter::test_writer_no_occupancies PASSED [ 13%] 434s testsuite/MDAnalysisTests/coordinates/test_pdb.py::TestPDBWriter::test_writer_no_tempfactors PASSED [ 13%] 435s testsuite/MDAnalysisTests/coordinates/test_pdb.py::TestPDBWriter::test_write_single_frame_Writer PASSED [ 13%] 436s testsuite/MDAnalysisTests/coordinates/test_pdb.py::TestPDBWriter::test_write_single_frame_AtomGroup PASSED [ 13%] 436s testsuite/MDAnalysisTests/coordinates/test_pdb.py::TestPDBWriter::test_write_nodims[universe_and_expected_dims0] PASSED [ 13%] 436s testsuite/MDAnalysisTests/coordinates/test_pdb.py::TestPDBWriter::test_write_nodims[universe_and_expected_dims1] PASSED [ 13%] 436s testsuite/MDAnalysisTests/coordinates/test_pdb.py::TestPDBWriter::test_check_coordinate_limits_min PASSED [ 13%] 437s testsuite/MDAnalysisTests/coordinates/test_pdb.py::TestPDBWriter::test_check_coordinate_limits_max PASSED [ 13%] 437s testsuite/MDAnalysisTests/coordinates/test_pdb.py::TestPDBWriter::test_check_HEADER_TITLE_multiframe PASSED [ 13%] 437s testsuite/MDAnalysisTests/coordinates/test_pdb.py::TestPDBWriter::test_check_MODEL_multiframe[0-12] PASSED [ 13%] 437s testsuite/MDAnalysisTests/coordinates/test_pdb.py::TestPDBWriter::test_check_MODEL_multiframe[9997-12] PASSED [ 13%] 439s testsuite/MDAnalysisTests/coordinates/test_pdb.py::TestPDBWriter::test_chainid_validated[@] PASSED [ 13%] 441s testsuite/MDAnalysisTests/coordinates/test_pdb.py::TestPDBWriter::test_chainid_validated[] PASSED [ 13%] 443s testsuite/MDAnalysisTests/coordinates/test_pdb.py::TestPDBWriter::test_chainid_validated[AA] PASSED [ 13%] 443s testsuite/MDAnalysisTests/coordinates/test_pdb.py::TestPDBWriter::test_stringio_outofrange PASSED [ 13%] 443s testsuite/MDAnalysisTests/coordinates/test_pdb.py::TestPDBWriter::test_hetatm_written PASSED [ 13%] 443s testsuite/MDAnalysisTests/coordinates/test_pdb.py::TestPDBWriter::test_default_atom_record_type_written PASSED [ 13%] 443s testsuite/MDAnalysisTests/coordinates/test_pdb.py::TestPDBWriter::test_abnormal_record_type PASSED [ 13%] 444s testsuite/MDAnalysisTests/coordinates/test_pdb.py::TestPDBWriter::test_no_reindex PASSED [ 13%] 444s testsuite/MDAnalysisTests/coordinates/test_pdb.py::TestPDBWriter::test_no_reindex_bonds PASSED [ 13%] 445s testsuite/MDAnalysisTests/coordinates/test_pdb.py::TestPDBWriter::test_reindex PASSED [ 13%] 445s testsuite/MDAnalysisTests/coordinates/test_pdb.py::TestPDBWriter::test_no_reindex_missing_ids PASSED [ 13%] 446s testsuite/MDAnalysisTests/coordinates/test_pdb.py::TestMultiPDBReader::test_n_frames PASSED [ 13%] 446s testsuite/MDAnalysisTests/coordinates/test_pdb.py::TestMultiPDBReader::test_n_atoms_frame PASSED [ 13%] 446s testsuite/MDAnalysisTests/coordinates/test_pdb.py::TestMultiPDBReader::test_rewind PASSED [ 13%] 446s testsuite/MDAnalysisTests/coordinates/test_pdb.py::TestMultiPDBReader::test_slice_iteration PASSED [ 13%] 449s testsuite/MDAnalysisTests/coordinates/test_pdb.py::TestMultiPDBReader::test_conect_bonds_conect PASSED [ 13%] 449s testsuite/MDAnalysisTests/coordinates/test_pdb.py::TestMultiPDBReader::test_conect_error PASSED [ 13%] 449s testsuite/MDAnalysisTests/coordinates/test_pdb.py::TestMultiPDBReader::test_numconnections PASSED [ 13%] 452s testsuite/MDAnalysisTests/coordinates/test_pdb.py::test_conect_bonds_all PASSED [ 13%] 452s testsuite/MDAnalysisTests/coordinates/test_pdb.py::test_write_bonds_partial PASSED [ 13%] 453s testsuite/MDAnalysisTests/coordinates/test_pdb.py::test_write_bonds_with_100000_ag_index PASSED [ 13%] 453s testsuite/MDAnalysisTests/coordinates/test_pdb.py::TestMultiPDBWriter::test_write_atomselection PASSED [ 13%] 453s testsuite/MDAnalysisTests/coordinates/test_pdb.py::TestMultiPDBWriter::test_write_all_timesteps PASSED [ 13%] 453s testsuite/MDAnalysisTests/coordinates/test_pdb.py::TestMultiPDBWriter::test_write_loop PASSED [ 13%] 453s testsuite/MDAnalysisTests/coordinates/test_pdb.py::TestMultiPDBWriter::test_write_atoms PASSED [ 13%] 454s testsuite/MDAnalysisTests/coordinates/test_pdb.py::TestPDBReaderBig::test_load_pdb PASSED [ 13%] 454s testsuite/MDAnalysisTests/coordinates/test_pdb.py::TestPDBReaderBig::test_selection PASSED [ 13%] 454s testsuite/MDAnalysisTests/coordinates/test_pdb.py::TestPDBReaderBig::test_n_atoms PASSED [ 13%] 454s testsuite/MDAnalysisTests/coordinates/test_pdb.py::TestPDBReaderBig::test_n_frames PASSED [ 13%] 454s testsuite/MDAnalysisTests/coordinates/test_pdb.py::TestPDBReaderBig::test_frame PASSED [ 13%] 454s testsuite/MDAnalysisTests/coordinates/test_pdb.py::TestPDBReaderBig::test_coordinates PASSED [ 13%] 454s testsuite/MDAnalysisTests/coordinates/test_pdb.py::TestPDBReaderBig::test_distances PASSED [ 13%] 454s testsuite/MDAnalysisTests/coordinates/test_pdb.py::TestPDBReaderBig::test_unitcell PASSED [ 13%] 454s testsuite/MDAnalysisTests/coordinates/test_pdb.py::TestPDBReaderBig::test_volume PASSED [ 13%] 454s testsuite/MDAnalysisTests/coordinates/test_pdb.py::TestPDBReaderBig::test_n_residues PASSED [ 13%] 454s testsuite/MDAnalysisTests/coordinates/test_pdb.py::TestPDBReaderBig::test_first_residue PASSED [ 13%] 454s testsuite/MDAnalysisTests/coordinates/test_pdb.py::TestPDBVaryingOccTmp::test_ts_data_keys PASSED [ 13%] 454s testsuite/MDAnalysisTests/coordinates/test_pdb.py::TestPDBVaryingOccTmp::test_varying_attrs[occupancy-occupancies-vals0] PASSED [ 13%] 454s testsuite/MDAnalysisTests/coordinates/test_pdb.py::TestPDBVaryingOccTmp::test_varying_attrs[tempfactor-tempfactors-vals1] PASSED [ 13%] 454s testsuite/MDAnalysisTests/coordinates/test_pdb.py::TestIncompletePDB::test_natoms PASSED [ 13%] 454s testsuite/MDAnalysisTests/coordinates/test_pdb.py::TestIncompletePDB::test_coords PASSED [ 13%] 454s testsuite/MDAnalysisTests/coordinates/test_pdb.py::TestIncompletePDB::test_dims PASSED [ 13%] 454s testsuite/MDAnalysisTests/coordinates/test_pdb.py::TestIncompletePDB::test_names PASSED [ 13%] 454s testsuite/MDAnalysisTests/coordinates/test_pdb.py::TestIncompletePDB::test_residues PASSED [ 13%] 454s testsuite/MDAnalysisTests/coordinates/test_pdb.py::TestIncompletePDB::test_resnames PASSED [ 13%] 454s testsuite/MDAnalysisTests/coordinates/test_pdb.py::TestIncompletePDB::test_reading_trajectory PASSED [ 13%] 454s testsuite/MDAnalysisTests/coordinates/test_pdb.py::TestPDBXLSerial::test_load PASSED [ 13%] 454s testsuite/MDAnalysisTests/coordinates/test_pdb.py::TestPDBXLSerial::test_serials PASSED [ 13%] 454s testsuite/MDAnalysisTests/coordinates/test_pdb.py::TestPSF_CRDReader::test_coordinates PASSED [ 13%] 454s testsuite/MDAnalysisTests/coordinates/test_pdb.py::TestPSF_CRDReader::test_distances PASSED [ 13%] 454s testsuite/MDAnalysisTests/coordinates/test_pdb.py::TestPSF_CRDReader::test_frame PASSED [ 13%] 454s testsuite/MDAnalysisTests/coordinates/test_pdb.py::TestPSF_CRDReader::test_frame_index_0 PASSED [ 13%] 454s testsuite/MDAnalysisTests/coordinates/test_pdb.py::TestPSF_CRDReader::test_frame_index_1_raises_IndexError PASSED [ 13%] 454s testsuite/MDAnalysisTests/coordinates/test_pdb.py::TestPSF_CRDReader::test_full_slice PASSED [ 13%] 454s testsuite/MDAnalysisTests/coordinates/test_pdb.py::TestPSF_CRDReader::test_last_slice PASSED [ 13%] 454s testsuite/MDAnalysisTests/coordinates/test_pdb.py::TestPSF_CRDReader::test_load_file PASSED [ 13%] 454s testsuite/MDAnalysisTests/coordinates/test_pdb.py::TestPSF_CRDReader::test_n_atoms PASSED [ 13%] 454s testsuite/MDAnalysisTests/coordinates/test_pdb.py::TestPSF_CRDReader::test_n_frames PASSED [ 13%] 454s testsuite/MDAnalysisTests/coordinates/test_pdb.py::TestPSF_CRDReader::test_numres PASSED [ 13%] 455s testsuite/MDAnalysisTests/coordinates/test_pdb.py::TestPSF_CRDReader::test_pickle_singleframe_reader PASSED [ 13%] 455s testsuite/MDAnalysisTests/coordinates/test_pdb.py::TestPSF_PDBReader::test_ENT PASSED [ 13%] 455s testsuite/MDAnalysisTests/coordinates/test_pdb.py::TestPSF_PDBReader::test_coordinates PASSED [ 13%] 455s testsuite/MDAnalysisTests/coordinates/test_pdb.py::TestPSF_PDBReader::test_dimensions PASSED [ 13%] 455s testsuite/MDAnalysisTests/coordinates/test_pdb.py::TestPSF_PDBReader::test_distances PASSED [ 13%] 455s testsuite/MDAnalysisTests/coordinates/test_pdb.py::TestPSF_PDBReader::test_frame PASSED [ 13%] 455s testsuite/MDAnalysisTests/coordinates/test_pdb.py::TestPSF_PDBReader::test_frame_index_0 PASSED [ 13%] 455s testsuite/MDAnalysisTests/coordinates/test_pdb.py::TestPSF_PDBReader::test_frame_index_1_raises_IndexError PASSED [ 13%] 455s testsuite/MDAnalysisTests/coordinates/test_pdb.py::TestPSF_PDBReader::test_full_slice PASSED [ 13%] 456s testsuite/MDAnalysisTests/coordinates/test_pdb.py::TestPSF_PDBReader::test_last_slice PASSED [ 13%] 456s testsuite/MDAnalysisTests/coordinates/test_pdb.py::TestPSF_PDBReader::test_load_file PASSED [ 13%] 456s testsuite/MDAnalysisTests/coordinates/test_pdb.py::TestPSF_PDBReader::test_n_atoms PASSED [ 13%] 456s testsuite/MDAnalysisTests/coordinates/test_pdb.py::TestPSF_PDBReader::test_n_frames PASSED [ 13%] 456s testsuite/MDAnalysisTests/coordinates/test_pdb.py::TestPSF_PDBReader::test_numres PASSED [ 13%] 456s testsuite/MDAnalysisTests/coordinates/test_pdb.py::TestPSF_PDBReader::test_pickle_singleframe_reader PASSED [ 13%] 456s testsuite/MDAnalysisTests/coordinates/test_pdb.py::TestPSF_PDBReader::test_uses_PDBReader PASSED [ 13%] 456s testsuite/MDAnalysisTests/coordinates/test_pdb.py::test_write_occupancies PASSED [ 13%] 456s testsuite/MDAnalysisTests/coordinates/test_pdb.py::TestWriterAlignments::test_atomname_alignment PASSED [ 13%] 456s testsuite/MDAnalysisTests/coordinates/test_pdb.py::TestWriterAlignments::test_atomtype_alignment PASSED [ 13%] 456s testsuite/MDAnalysisTests/coordinates/test_pdb.py::test_deduce_PDB_atom_name[atom0- CA ] PASSED [ 13%] 456s testsuite/MDAnalysisTests/coordinates/test_pdb.py::test_deduce_PDB_atom_name[atom1- OE1] PASSED [ 13%] 456s testsuite/MDAnalysisTests/coordinates/test_pdb.py::test_deduce_PDB_atom_name[atom2-SE ] PASSED [ 13%] 456s testsuite/MDAnalysisTests/coordinates/test_pdb.py::test_deduce_PDB_atom_name[atom3-CA ] PASSED [ 13%] 456s testsuite/MDAnalysisTests/coordinates/test_pdb.py::test_deduce_PDB_atom_name[atom4-FE ] PASSED [ 13%] 456s testsuite/MDAnalysisTests/coordinates/test_pdb.py::test_deduce_PDB_atom_name[atom5- P ] PASSED [ 13%] 456s testsuite/MDAnalysisTests/coordinates/test_pdb.py::TestCrystModelOrder::test_len[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/cryst_then_model.pdb] PASSED [ 13%] 456s testsuite/MDAnalysisTests/coordinates/test_pdb.py::TestCrystModelOrder::test_len[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/cryst_then_model.pdb.bz2] PASSED [ 13%] 456s testsuite/MDAnalysisTests/coordinates/test_pdb.py::TestCrystModelOrder::test_len[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/cryst_then_model.pdb.gz] PASSED [ 13%] 456s testsuite/MDAnalysisTests/coordinates/test_pdb.py::TestCrystModelOrder::test_len[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/model_then_cryst.pdb] PASSED [ 14%] 456s testsuite/MDAnalysisTests/coordinates/test_pdb.py::TestCrystModelOrder::test_len[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/model_then_cryst.pdb.bz2] PASSED [ 14%] 456s testsuite/MDAnalysisTests/coordinates/test_pdb.py::TestCrystModelOrder::test_len[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/model_then_cryst.pdb.gz] PASSED [ 14%] 456s testsuite/MDAnalysisTests/coordinates/test_pdb.py::TestCrystModelOrder::test_order[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/cryst_then_model.pdb] PASSED [ 14%] 456s testsuite/MDAnalysisTests/coordinates/test_pdb.py::TestCrystModelOrder::test_order[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/cryst_then_model.pdb.bz2] PASSED [ 14%] 456s testsuite/MDAnalysisTests/coordinates/test_pdb.py::TestCrystModelOrder::test_order[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/cryst_then_model.pdb.gz] PASSED [ 14%] 456s testsuite/MDAnalysisTests/coordinates/test_pdb.py::TestCrystModelOrder::test_order[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/model_then_cryst.pdb] PASSED [ 14%] 456s testsuite/MDAnalysisTests/coordinates/test_pdb.py::TestCrystModelOrder::test_order[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/model_then_cryst.pdb.bz2] PASSED [ 14%] 456s testsuite/MDAnalysisTests/coordinates/test_pdb.py::TestCrystModelOrder::test_order[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/model_then_cryst.pdb.gz] PASSED [ 14%] 456s testsuite/MDAnalysisTests/coordinates/test_pdb.py::TestCrystModelOrder::test_seekaround[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/cryst_then_model.pdb] PASSED [ 14%] 456s testsuite/MDAnalysisTests/coordinates/test_pdb.py::TestCrystModelOrder::test_seekaround[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/cryst_then_model.pdb.bz2] PASSED [ 14%] 456s testsuite/MDAnalysisTests/coordinates/test_pdb.py::TestCrystModelOrder::test_seekaround[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/cryst_then_model.pdb.gz] PASSED [ 14%] 456s testsuite/MDAnalysisTests/coordinates/test_pdb.py::TestCrystModelOrder::test_seekaround[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/model_then_cryst.pdb] PASSED [ 14%] 456s testsuite/MDAnalysisTests/coordinates/test_pdb.py::TestCrystModelOrder::test_seekaround[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/model_then_cryst.pdb.bz2] PASSED [ 14%] 456s testsuite/MDAnalysisTests/coordinates/test_pdb.py::TestCrystModelOrder::test_seekaround[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/model_then_cryst.pdb.gz] PASSED [ 14%] 456s testsuite/MDAnalysisTests/coordinates/test_pdb.py::TestCrystModelOrder::test_rewind[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/cryst_then_model.pdb] PASSED [ 14%] 456s testsuite/MDAnalysisTests/coordinates/test_pdb.py::TestCrystModelOrder::test_rewind[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/cryst_then_model.pdb.bz2] PASSED [ 14%] 456s testsuite/MDAnalysisTests/coordinates/test_pdb.py::TestCrystModelOrder::test_rewind[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/cryst_then_model.pdb.gz] PASSED [ 14%] 456s testsuite/MDAnalysisTests/coordinates/test_pdb.py::TestCrystModelOrder::test_rewind[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/model_then_cryst.pdb] PASSED [ 14%] 456s testsuite/MDAnalysisTests/coordinates/test_pdb.py::TestCrystModelOrder::test_rewind[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/model_then_cryst.pdb.bz2] PASSED [ 14%] 456s testsuite/MDAnalysisTests/coordinates/test_pdb.py::TestCrystModelOrder::test_rewind[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/model_then_cryst.pdb.gz] PASSED [ 14%] 456s testsuite/MDAnalysisTests/coordinates/test_pdb.py::test_standalone_pdb PASSED [ 14%] 456s testsuite/MDAnalysisTests/coordinates/test_pdb.py::test_write_pdb_zero_atoms PASSED [ 14%] 456s testsuite/MDAnalysisTests/coordinates/test_pdb.py::test_atom_not_match PASSED [ 14%] 456s testsuite/MDAnalysisTests/coordinates/test_pdb.py::test_partially_missing_cryst PASSED [ 14%] 456s testsuite/MDAnalysisTests/coordinates/test_pdb.py::test_write_no_atoms_elements PASSED [ 14%] 456s testsuite/MDAnalysisTests/coordinates/test_pdb.py::test_write_atom_elements PASSED [ 14%] 456s testsuite/MDAnalysisTests/coordinates/test_pdb.py::test_elements_roundtrip PASSED [ 14%] 456s testsuite/MDAnalysisTests/coordinates/test_pdb.py::test_cryst_meaningless_warning PASSED [ 14%] 457s testsuite/MDAnalysisTests/coordinates/test_pdb.py::test_cryst_meaningless_select PASSED [ 14%] 457s testsuite/MDAnalysisTests/coordinates/test_pdb.py::test_charges_roundtrip PASSED [ 14%] 457s testsuite/MDAnalysisTests/coordinates/test_pdb.py::test_charges_not_int PASSED [ 14%] 457s testsuite/MDAnalysisTests/coordinates/test_pdb.py::test_charges_limit[99] PASSED [ 14%] 457s testsuite/MDAnalysisTests/coordinates/test_pdb.py::test_charges_limit[-100] PASSED [ 14%] 457s testsuite/MDAnalysisTests/coordinates/test_pdbqt.py::TestPDBQT::test_segid PASSED [ 14%] 457s testsuite/MDAnalysisTests/coordinates/test_pdbqt.py::TestPDBQT::test_chainID PASSED [ 14%] 457s testsuite/MDAnalysisTests/coordinates/test_pdbqt.py::TestPDBQT::test_protein PASSED [ 14%] 457s testsuite/MDAnalysisTests/coordinates/test_pdbqt.py::TestPDBQT::test_backbone PASSED [ 14%] 457s testsuite/MDAnalysisTests/coordinates/test_pdbqt.py::TestPDBQT::test_neighborhood PASSED [ 14%] 457s testsuite/MDAnalysisTests/coordinates/test_pdbqt.py::TestPDBQT::test_n_frames PASSED [ 14%] 457s testsuite/MDAnalysisTests/coordinates/test_pdbqt.py::TestPDBQT::test_frame PASSED [ 14%] 457s testsuite/MDAnalysisTests/coordinates/test_pdbqt.py::TestPDBQTWriter::test_roundtrip_writing_coords[test.pdbqt] PASSED [ 14%] 457s testsuite/MDAnalysisTests/coordinates/test_pdbqt.py::TestPDBQTWriter::test_roundtrip_writing_coords[test.pdbqt.bz2] PASSED [ 14%] 457s testsuite/MDAnalysisTests/coordinates/test_pdbqt.py::TestPDBQTWriter::test_roundtrip_writing_coords[test.pdbqt.gz] PASSED [ 14%] 457s testsuite/MDAnalysisTests/coordinates/test_pdbqt.py::TestPDBQTWriter::test_roundtrip_formatting PASSED [ 14%] 457s testsuite/MDAnalysisTests/coordinates/test_pdbqt.py::TestPDBQTWriter::test_write_no_charges PASSED [ 14%] 457s testsuite/MDAnalysisTests/coordinates/test_pdbqt.py::TestPDBQTWriter::test_write_no_chainids_with_segids PASSED [ 14%] 457s testsuite/MDAnalysisTests/coordinates/test_pdbqt.py::TestPDBQTWriter::test_get_writer PASSED [ 14%] 457s testsuite/MDAnalysisTests/coordinates/test_pqr.py::TestPQRReader::test_ArgCACharges PASSED [ 14%] 457s testsuite/MDAnalysisTests/coordinates/test_pqr.py::TestPQRReader::test_ProNCharges PASSED [ 14%] 457s testsuite/MDAnalysisTests/coordinates/test_pqr.py::TestPQRReader::test_coordinates PASSED [ 14%] 457s testsuite/MDAnalysisTests/coordinates/test_pqr.py::TestPQRReader::test_dimensions PASSED [ 14%] 457s testsuite/MDAnalysisTests/coordinates/test_pqr.py::TestPQRReader::test_distances PASSED [ 14%] 457s testsuite/MDAnalysisTests/coordinates/test_pqr.py::TestPQRReader::test_frame PASSED [ 14%] 457s testsuite/MDAnalysisTests/coordinates/test_pqr.py::TestPQRReader::test_frame_index_0 PASSED [ 14%] 457s testsuite/MDAnalysisTests/coordinates/test_pqr.py::TestPQRReader::test_frame_index_1_raises_IndexError PASSED [ 14%] 457s testsuite/MDAnalysisTests/coordinates/test_pqr.py::TestPQRReader::test_full_slice PASSED [ 14%] 457s testsuite/MDAnalysisTests/coordinates/test_pqr.py::TestPQRReader::test_hydrogenCharges PASSED [ 14%] 457s testsuite/MDAnalysisTests/coordinates/test_pqr.py::TestPQRReader::test_last_slice PASSED [ 14%] 457s testsuite/MDAnalysisTests/coordinates/test_pqr.py::TestPQRReader::test_load_file PASSED [ 14%] 457s testsuite/MDAnalysisTests/coordinates/test_pqr.py::TestPQRReader::test_n_atoms PASSED [ 14%] 457s testsuite/MDAnalysisTests/coordinates/test_pqr.py::TestPQRReader::test_n_frames PASSED [ 14%] 457s testsuite/MDAnalysisTests/coordinates/test_pqr.py::TestPQRReader::test_numres PASSED [ 14%] 457s testsuite/MDAnalysisTests/coordinates/test_pqr.py::TestPQRReader::test_pickle_singleframe_reader PASSED [ 14%] 457s testsuite/MDAnalysisTests/coordinates/test_pqr.py::TestPQRReader::test_total_charge PASSED [ 14%] 457s testsuite/MDAnalysisTests/coordinates/test_pqr.py::TestPQRWriter::test_simple_writer_roundtrip[test.pqr] PASSED [ 14%] 458s testsuite/MDAnalysisTests/coordinates/test_pqr.py::TestPQRWriter::test_simple_writer_roundtrip[test.pqr.bz2] PASSED [ 14%] 458s testsuite/MDAnalysisTests/coordinates/test_pqr.py::TestPQRWriter::test_simple_writer_roundtrip[test.pqr.gz] PASSED [ 14%] 458s testsuite/MDAnalysisTests/coordinates/test_pqr.py::TestPQRWriter::test_writer_noChainID PASSED [ 14%] 458s testsuite/MDAnalysisTests/coordinates/test_pqr.py::TestPQRWriter::test_write_withChainID PASSED [ 14%] 458s testsuite/MDAnalysisTests/coordinates/test_pqr.py::TestPQRWriter::test_total_charge PASSED [ 14%] 458s testsuite/MDAnalysisTests/coordinates/test_pqr.py::TestPQRWriterMissingAttrs::test_no_names_writing PASSED [ 14%] 458s testsuite/MDAnalysisTests/coordinates/test_pqr.py::TestPQRWriterMissingAttrs::test_no_resnames_writing PASSED [ 14%] 458s testsuite/MDAnalysisTests/coordinates/test_pqr.py::TestPQRWriterMissingAttrs::test_no_radii_writing PASSED [ 14%] 458s testsuite/MDAnalysisTests/coordinates/test_pqr.py::TestPQRWriterMissingAttrs::test_no_charges_writing PASSED [ 14%] 458s testsuite/MDAnalysisTests/coordinates/test_reader_api.py::TestMultiFrameReader::test_required_attributes PASSED [ 14%] 458s testsuite/MDAnalysisTests/coordinates/test_reader_api.py::TestMultiFrameReader::test_close PASSED [ 14%] 458s testsuite/MDAnalysisTests/coordinates/test_reader_api.py::TestMultiFrameReader::test_rewind PASSED [ 14%] 458s testsuite/MDAnalysisTests/coordinates/test_reader_api.py::TestMultiFrameReader::test_context PASSED [ 14%] 458s testsuite/MDAnalysisTests/coordinates/test_reader_api.py::TestMultiFrameReader::test_len PASSED [ 14%] 458s testsuite/MDAnalysisTests/coordinates/test_reader_api.py::TestMultiFrameReader::test_raises_StopIteration PASSED [ 14%] 458s testsuite/MDAnalysisTests/coordinates/test_reader_api.py::TestMultiFrameReader::test_slice[None-None-None] PASSED [ 14%] 458s testsuite/MDAnalysisTests/coordinates/test_reader_api.py::TestMultiFrameReader::test_slice[None-5-None] PASSED [ 14%] 458s testsuite/MDAnalysisTests/coordinates/test_reader_api.py::TestMultiFrameReader::test_slice[2-None-None] PASSED [ 14%] 458s testsuite/MDAnalysisTests/coordinates/test_reader_api.py::TestMultiFrameReader::test_slice[2-5-None] PASSED [ 14%] 458s testsuite/MDAnalysisTests/coordinates/test_reader_api.py::TestMultiFrameReader::test_slice[None-None-2] PASSED [ 14%] 458s testsuite/MDAnalysisTests/coordinates/test_reader_api.py::TestMultiFrameReader::test_slice[None-None--1] PASSED [ 14%] 458s testsuite/MDAnalysisTests/coordinates/test_reader_api.py::TestMultiFrameReader::test_slice[None--1--1] PASSED [ 14%] 458s testsuite/MDAnalysisTests/coordinates/test_reader_api.py::TestMultiFrameReader::test_slice[10-0--1] PASSED [ 14%] 458s testsuite/MDAnalysisTests/coordinates/test_reader_api.py::TestMultiFrameReader::test_slice[0-10-1] PASSED [ 14%] 458s testsuite/MDAnalysisTests/coordinates/test_reader_api.py::TestMultiFrameReader::test_slice[0-10-2] PASSED [ 14%] 458s testsuite/MDAnalysisTests/coordinates/test_reader_api.py::TestMultiFrameReader::test_slice[None-20-None] PASSED [ 14%] 458s testsuite/MDAnalysisTests/coordinates/test_reader_api.py::TestMultiFrameReader::test_slice[None-20-2] PASSED [ 14%] 458s testsuite/MDAnalysisTests/coordinates/test_reader_api.py::TestMultiFrameReader::test_slice[0-5-2] PASSED [ 14%] 458s testsuite/MDAnalysisTests/coordinates/test_reader_api.py::TestMultiFrameReader::test_slice[5-None--1] PASSED [ 14%] 458s testsuite/MDAnalysisTests/coordinates/test_reader_api.py::TestMultiFrameReader::test_slice[None-5--1] PASSED [ 14%] 458s testsuite/MDAnalysisTests/coordinates/test_reader_api.py::TestMultiFrameReader::test_slice[100-10-1] PASSED [ 14%] 458s testsuite/MDAnalysisTests/coordinates/test_reader_api.py::TestMultiFrameReader::test_slice[-10-None-1] PASSED [ 14%] 458s testsuite/MDAnalysisTests/coordinates/test_reader_api.py::TestMultiFrameReader::test_slice[100-None--1] PASSED [ 14%] 458s testsuite/MDAnalysisTests/coordinates/test_reader_api.py::TestMultiFrameReader::test_slice[100-5--20] PASSED [ 14%] 458s testsuite/MDAnalysisTests/coordinates/test_reader_api.py::TestMultiFrameReader::test_slice[5-1-1] PASSED [ 14%] 458s testsuite/MDAnalysisTests/coordinates/test_reader_api.py::TestMultiFrameReader::test_slice[1-5--1] PASSED [ 14%] 458s testsuite/MDAnalysisTests/coordinates/test_reader_api.py::TestMultiFrameReader::test_slice[-100-None-None] PASSED [ 14%] 458s testsuite/MDAnalysisTests/coordinates/test_reader_api.py::TestMultiFrameReader::test_slice[100-None-None] PASSED [ 14%] 458s testsuite/MDAnalysisTests/coordinates/test_reader_api.py::TestMultiFrameReader::test_slice[-2-10--2] PASSED [ 14%] 458s testsuite/MDAnalysisTests/coordinates/test_reader_api.py::TestMultiFrameReader::test_slice[0-0-1] PASSED [ 14%] 458s testsuite/MDAnalysisTests/coordinates/test_reader_api.py::TestMultiFrameReader::test_slice[10-1-2] PASSED [ 14%] 458s testsuite/MDAnalysisTests/coordinates/test_reader_api.py::TestMultiFrameReader::test_slice_VE_1 PASSED [ 14%] 458s testsuite/MDAnalysisTests/coordinates/test_reader_api.py::TestMultiFrameReader::test_slice_TE_1 PASSED [ 14%] 458s testsuite/MDAnalysisTests/coordinates/test_reader_api.py::TestMultiFrameReader::test_getitem[sl0-list] PASSED [ 14%] 458s testsuite/MDAnalysisTests/coordinates/test_reader_api.py::TestMultiFrameReader::test_getitem[sl0-array] PASSED [ 14%] 458s testsuite/MDAnalysisTests/coordinates/test_reader_api.py::TestMultiFrameReader::test_getitem[sl1-list] PASSED [ 14%] 458s testsuite/MDAnalysisTests/coordinates/test_reader_api.py::TestMultiFrameReader::test_getitem[sl1-array] PASSED [ 14%] 458s testsuite/MDAnalysisTests/coordinates/test_reader_api.py::TestMultiFrameReader::test_getitem[sl2-list] PASSED [ 14%] 458s testsuite/MDAnalysisTests/coordinates/test_reader_api.py::TestMultiFrameReader::test_getitem[sl2-array] PASSED [ 14%] 458s testsuite/MDAnalysisTests/coordinates/test_reader_api.py::TestMultiFrameReader::test_getitem[sl3-list] PASSED [ 14%] 458s testsuite/MDAnalysisTests/coordinates/test_reader_api.py::TestMultiFrameReader::test_getitem[sl3-array] PASSED [ 14%] 458s testsuite/MDAnalysisTests/coordinates/test_reader_api.py::TestMultiFrameReader::test_getitem[sl4-list] PASSED [ 14%] 458s testsuite/MDAnalysisTests/coordinates/test_reader_api.py::TestMultiFrameReader::test_getitem[sl4-array] PASSED [ 14%] 458s testsuite/MDAnalysisTests/coordinates/test_reader_api.py::TestMultiFrameReader::test_getitem[sl5-list] PASSED [ 14%] 458s testsuite/MDAnalysisTests/coordinates/test_reader_api.py::TestMultiFrameReader::test_getitem[sl5-array] PASSED [ 14%] 458s testsuite/MDAnalysisTests/coordinates/test_reader_api.py::TestMultiFrameReader::test_getitem[sl6-list] PASSED [ 14%] 458s testsuite/MDAnalysisTests/coordinates/test_reader_api.py::TestMultiFrameReader::test_getitem[sl6-array] PASSED [ 14%] 458s testsuite/MDAnalysisTests/coordinates/test_reader_api.py::TestMultiFrameReader::test_getitem_len[sl0] PASSED [ 14%] 458s testsuite/MDAnalysisTests/coordinates/test_reader_api.py::TestMultiFrameReader::test_getitem_len[sl1] PASSED [ 14%] 458s testsuite/MDAnalysisTests/coordinates/test_reader_api.py::TestMultiFrameReader::test_getitem_len[sl2] PASSED [ 14%] 458s testsuite/MDAnalysisTests/coordinates/test_reader_api.py::TestMultiFrameReader::test_getitem_len[sl3] PASSED [ 14%] 458s testsuite/MDAnalysisTests/coordinates/test_reader_api.py::TestMultiFrameReader::test_getitem_len[sl4] PASSED [ 14%] 458s testsuite/MDAnalysisTests/coordinates/test_reader_api.py::TestMultiFrameReader::test_getitem_len[sl5] PASSED [ 14%] 458s testsuite/MDAnalysisTests/coordinates/test_reader_api.py::TestMultiFrameReader::test_getitem_len[sl6] PASSED [ 14%] 458s testsuite/MDAnalysisTests/coordinates/test_reader_api.py::TestMultiFrameReader::test_getitem_len[sl7] PASSED [ 14%] 458s testsuite/MDAnalysisTests/coordinates/test_reader_api.py::TestMultiFrameReader::test_getitem_len[sl8] PASSED [ 14%] 458s testsuite/MDAnalysisTests/coordinates/test_reader_api.py::TestMultiFrameReader::test_getitem_len[sl9] PASSED [ 14%] 458s testsuite/MDAnalysisTests/coordinates/test_reader_api.py::TestMultiFrameReader::test_getitem_len[sl10] PASSED [ 14%] 458s testsuite/MDAnalysisTests/coordinates/test_reader_api.py::TestMultiFrameReader::test_getitem_len[sl11] PASSED [ 14%] 458s testsuite/MDAnalysisTests/coordinates/test_reader_api.py::TestMultiFrameReader::test_getitem_len[sl12] PASSED [ 14%] 458s testsuite/MDAnalysisTests/coordinates/test_reader_api.py::TestMultiFrameReader::test_getitem_len[sl13] PASSED [ 14%] 458s testsuite/MDAnalysisTests/coordinates/test_reader_api.py::TestMultiFrameReader::test_getitem_len[sl14] PASSED [ 14%] 458s testsuite/MDAnalysisTests/coordinates/test_reader_api.py::TestMultiFrameReader::test_getitem_len_empty[list] PASSED [ 14%] 458s testsuite/MDAnalysisTests/coordinates/test_reader_api.py::TestMultiFrameReader::test_getitem_len_empty[array] PASSED [ 14%] 458s testsuite/MDAnalysisTests/coordinates/test_reader_api.py::TestMultiFrameReader::test_double_getitem[sl20-sl10] PASSED [ 14%] 458s testsuite/MDAnalysisTests/coordinates/test_reader_api.py::TestMultiFrameReader::test_double_getitem[sl20-sl11] PASSED [ 14%] 458s testsuite/MDAnalysisTests/coordinates/test_reader_api.py::TestMultiFrameReader::test_double_getitem[sl20-sl12] PASSED [ 14%] 458s testsuite/MDAnalysisTests/coordinates/test_reader_api.py::TestMultiFrameReader::test_double_getitem[sl20-sl13] PASSED [ 14%] 458s testsuite/MDAnalysisTests/coordinates/test_reader_api.py::TestMultiFrameReader::test_double_getitem[sl20-sl14] PASSED [ 14%] 458s testsuite/MDAnalysisTests/coordinates/test_reader_api.py::TestMultiFrameReader::test_double_getitem[sl21-sl10] PASSED [ 14%] 458s testsuite/MDAnalysisTests/coordinates/test_reader_api.py::TestMultiFrameReader::test_double_getitem[sl21-sl11] PASSED [ 14%] 458s testsuite/MDAnalysisTests/coordinates/test_reader_api.py::TestMultiFrameReader::test_double_getitem[sl21-sl12] PASSED [ 14%] 458s testsuite/MDAnalysisTests/coordinates/test_reader_api.py::TestMultiFrameReader::test_double_getitem[sl21-sl13] PASSED [ 14%] 458s testsuite/MDAnalysisTests/coordinates/test_reader_api.py::TestMultiFrameReader::test_double_getitem[sl21-sl14] PASSED [ 14%] 458s testsuite/MDAnalysisTests/coordinates/test_reader_api.py::TestMultiFrameReader::test_double_getitem[sl22-sl10] PASSED [ 14%] 458s testsuite/MDAnalysisTests/coordinates/test_reader_api.py::TestMultiFrameReader::test_double_getitem[sl22-sl11] PASSED [ 14%] 458s testsuite/MDAnalysisTests/coordinates/test_reader_api.py::TestMultiFrameReader::test_double_getitem[sl22-sl12] PASSED [ 14%] 458s testsuite/MDAnalysisTests/coordinates/test_reader_api.py::TestMultiFrameReader::test_double_getitem[sl22-sl13] PASSED [ 14%] 458s testsuite/MDAnalysisTests/coordinates/test_reader_api.py::TestMultiFrameReader::test_double_getitem[sl22-sl14] PASSED [ 14%] 458s testsuite/MDAnalysisTests/coordinates/test_reader_api.py::TestMultiFrameReader::test_double_getitem[sl23-sl10] PASSED [ 14%] 458s testsuite/MDAnalysisTests/coordinates/test_reader_api.py::TestMultiFrameReader::test_double_getitem[sl23-sl11] PASSED [ 14%] 458s testsuite/MDAnalysisTests/coordinates/test_reader_api.py::TestMultiFrameReader::test_double_getitem[sl23-sl12] PASSED [ 14%] 458s testsuite/MDAnalysisTests/coordinates/test_reader_api.py::TestMultiFrameReader::test_double_getitem[sl23-sl13] PASSED [ 14%] 458s testsuite/MDAnalysisTests/coordinates/test_reader_api.py::TestMultiFrameReader::test_double_getitem[sl23-sl14] PASSED [ 14%] 458s testsuite/MDAnalysisTests/coordinates/test_reader_api.py::TestMultiFrameReader::test_double_getitem[sl24-sl10] PASSED [ 14%] 458s testsuite/MDAnalysisTests/coordinates/test_reader_api.py::TestMultiFrameReader::test_double_getitem[sl24-sl11] PASSED [ 14%] 458s testsuite/MDAnalysisTests/coordinates/test_reader_api.py::TestMultiFrameReader::test_double_getitem[sl24-sl12] PASSED [ 14%] 458s testsuite/MDAnalysisTests/coordinates/test_reader_api.py::TestMultiFrameReader::test_double_getitem[sl24-sl13] PASSED [ 14%] 458s testsuite/MDAnalysisTests/coordinates/test_reader_api.py::TestMultiFrameReader::test_double_getitem[sl24-sl14] PASSED [ 14%] 458s testsuite/MDAnalysisTests/coordinates/test_reader_api.py::TestMultiFrameReader::test_double_getitem[sl25-sl10] PASSED [ 14%] 458s testsuite/MDAnalysisTests/coordinates/test_reader_api.py::TestMultiFrameReader::test_double_getitem[sl25-sl11] PASSED [ 14%] 458s testsuite/MDAnalysisTests/coordinates/test_reader_api.py::TestMultiFrameReader::test_double_getitem[sl25-sl12] PASSED [ 14%] 458s testsuite/MDAnalysisTests/coordinates/test_reader_api.py::TestMultiFrameReader::test_double_getitem[sl25-sl13] PASSED [ 14%] 458s testsuite/MDAnalysisTests/coordinates/test_reader_api.py::TestMultiFrameReader::test_double_getitem[sl25-sl14] PASSED [ 14%] 458s testsuite/MDAnalysisTests/coordinates/test_reader_api.py::TestMultiFrameReader::test_double_getitem[sl26-sl10] PASSED [ 14%] 458s testsuite/MDAnalysisTests/coordinates/test_reader_api.py::TestMultiFrameReader::test_double_getitem[sl26-sl11] PASSED [ 14%] 458s testsuite/MDAnalysisTests/coordinates/test_reader_api.py::TestMultiFrameReader::test_double_getitem[sl26-sl12] PASSED [ 14%] 458s testsuite/MDAnalysisTests/coordinates/test_reader_api.py::TestMultiFrameReader::test_double_getitem[sl26-sl13] PASSED [ 14%] 458s testsuite/MDAnalysisTests/coordinates/test_reader_api.py::TestMultiFrameReader::test_double_getitem[sl26-sl14] PASSED [ 14%] 458s testsuite/MDAnalysisTests/coordinates/test_reader_api.py::TestMultiFrameReader::test_double_getitem[sl27-sl10] PASSED [ 14%] 458s testsuite/MDAnalysisTests/coordinates/test_reader_api.py::TestMultiFrameReader::test_double_getitem[sl27-sl11] PASSED [ 14%] 458s testsuite/MDAnalysisTests/coordinates/test_reader_api.py::TestMultiFrameReader::test_double_getitem[sl27-sl12] PASSED [ 14%] 458s testsuite/MDAnalysisTests/coordinates/test_reader_api.py::TestMultiFrameReader::test_double_getitem[sl27-sl13] PASSED [ 14%] 458s testsuite/MDAnalysisTests/coordinates/test_reader_api.py::TestMultiFrameReader::test_double_getitem[sl27-sl14] PASSED [ 14%] 458s testsuite/MDAnalysisTests/coordinates/test_reader_api.py::TestMultiFrameReader::test_double_getitem[sl28-sl10] PASSED [ 14%] 458s testsuite/MDAnalysisTests/coordinates/test_reader_api.py::TestMultiFrameReader::test_double_getitem[sl28-sl11] PASSED [ 14%] 458s testsuite/MDAnalysisTests/coordinates/test_reader_api.py::TestMultiFrameReader::test_double_getitem[sl28-sl12] PASSED [ 14%] 458s testsuite/MDAnalysisTests/coordinates/test_reader_api.py::TestMultiFrameReader::test_double_getitem[sl28-sl13] PASSED [ 14%] 458s testsuite/MDAnalysisTests/coordinates/test_reader_api.py::TestMultiFrameReader::test_double_getitem[sl28-sl14] PASSED [ 15%] 458s testsuite/MDAnalysisTests/coordinates/test_reader_api.py::TestMultiFrameReader::test_double_getitem_int[0-sl10] PASSED [ 15%] 458s testsuite/MDAnalysisTests/coordinates/test_reader_api.py::TestMultiFrameReader::test_double_getitem_int[0-sl11] PASSED [ 15%] 458s testsuite/MDAnalysisTests/coordinates/test_reader_api.py::TestMultiFrameReader::test_double_getitem_int[0-sl12] PASSED [ 15%] 458s testsuite/MDAnalysisTests/coordinates/test_reader_api.py::TestMultiFrameReader::test_double_getitem_int[0-sl13] PASSED [ 15%] 458s testsuite/MDAnalysisTests/coordinates/test_reader_api.py::TestMultiFrameReader::test_double_getitem_int[0-sl14] PASSED [ 15%] 458s testsuite/MDAnalysisTests/coordinates/test_reader_api.py::TestMultiFrameReader::test_double_getitem_int[0-sl15] PASSED [ 15%] 458s testsuite/MDAnalysisTests/coordinates/test_reader_api.py::TestMultiFrameReader::test_double_getitem_int[2-sl10] PASSED [ 15%] 458s testsuite/MDAnalysisTests/coordinates/test_reader_api.py::TestMultiFrameReader::test_double_getitem_int[2-sl11] PASSED [ 15%] 458s testsuite/MDAnalysisTests/coordinates/test_reader_api.py::TestMultiFrameReader::test_double_getitem_int[2-sl12] PASSED [ 15%] 458s testsuite/MDAnalysisTests/coordinates/test_reader_api.py::TestMultiFrameReader::test_double_getitem_int[2-sl13] PASSED [ 15%] 458s testsuite/MDAnalysisTests/coordinates/test_reader_api.py::TestMultiFrameReader::test_double_getitem_int[2-sl14] PASSED [ 15%] 458s testsuite/MDAnalysisTests/coordinates/test_reader_api.py::TestMultiFrameReader::test_double_getitem_int[2-sl15] PASSED [ 15%] 458s testsuite/MDAnalysisTests/coordinates/test_reader_api.py::TestMultiFrameReader::test_double_getitem_int[4-sl10] PASSED [ 15%] 458s testsuite/MDAnalysisTests/coordinates/test_reader_api.py::TestMultiFrameReader::test_double_getitem_int[4-sl11] PASSED [ 15%] 458s testsuite/MDAnalysisTests/coordinates/test_reader_api.py::TestMultiFrameReader::test_double_getitem_int[4-sl12] PASSED [ 15%] 458s testsuite/MDAnalysisTests/coordinates/test_reader_api.py::TestMultiFrameReader::test_double_getitem_int[4-sl13] PASSED [ 15%] 458s testsuite/MDAnalysisTests/coordinates/test_reader_api.py::TestMultiFrameReader::test_double_getitem_int[4-sl14] PASSED [ 15%] 458s testsuite/MDAnalysisTests/coordinates/test_reader_api.py::TestMultiFrameReader::test_double_getitem_int[4-sl15] PASSED [ 15%] 458s testsuite/MDAnalysisTests/coordinates/test_reader_api.py::TestMultiFrameReader::test_double_getitem_int[-1-sl10] PASSED [ 15%] 458s testsuite/MDAnalysisTests/coordinates/test_reader_api.py::TestMultiFrameReader::test_double_getitem_int[-1-sl11] PASSED [ 15%] 458s testsuite/MDAnalysisTests/coordinates/test_reader_api.py::TestMultiFrameReader::test_double_getitem_int[-1-sl12] PASSED [ 15%] 458s testsuite/MDAnalysisTests/coordinates/test_reader_api.py::TestMultiFrameReader::test_double_getitem_int[-1-sl13] PASSED [ 15%] 458s testsuite/MDAnalysisTests/coordinates/test_reader_api.py::TestMultiFrameReader::test_double_getitem_int[-1-sl14] PASSED [ 15%] 458s testsuite/MDAnalysisTests/coordinates/test_reader_api.py::TestMultiFrameReader::test_double_getitem_int[-1-sl15] PASSED [ 15%] 458s testsuite/MDAnalysisTests/coordinates/test_reader_api.py::TestMultiFrameReader::test_double_getitem_int[-2-sl10] PASSED [ 15%] 458s testsuite/MDAnalysisTests/coordinates/test_reader_api.py::TestMultiFrameReader::test_double_getitem_int[-2-sl11] PASSED [ 15%] 458s testsuite/MDAnalysisTests/coordinates/test_reader_api.py::TestMultiFrameReader::test_double_getitem_int[-2-sl12] PASSED [ 15%] 458s testsuite/MDAnalysisTests/coordinates/test_reader_api.py::TestMultiFrameReader::test_double_getitem_int[-2-sl13] PASSED [ 15%] 458s testsuite/MDAnalysisTests/coordinates/test_reader_api.py::TestMultiFrameReader::test_double_getitem_int[-2-sl14] PASSED [ 15%] 458s testsuite/MDAnalysisTests/coordinates/test_reader_api.py::TestMultiFrameReader::test_double_getitem_int[-2-sl15] PASSED [ 15%] 458s testsuite/MDAnalysisTests/coordinates/test_reader_api.py::TestMultiFrameReader::test_double_getitem_int[-4-sl10] PASSED [ 15%] 458s testsuite/MDAnalysisTests/coordinates/test_reader_api.py::TestMultiFrameReader::test_double_getitem_int[-4-sl11] PASSED [ 15%] 458s testsuite/MDAnalysisTests/coordinates/test_reader_api.py::TestMultiFrameReader::test_double_getitem_int[-4-sl12] PASSED [ 15%] 458s testsuite/MDAnalysisTests/coordinates/test_reader_api.py::TestMultiFrameReader::test_double_getitem_int[-4-sl13] PASSED [ 15%] 458s testsuite/MDAnalysisTests/coordinates/test_reader_api.py::TestMultiFrameReader::test_double_getitem_int[-4-sl14] PASSED [ 15%] 458s testsuite/MDAnalysisTests/coordinates/test_reader_api.py::TestMultiFrameReader::test_double_getitem_int[-4-sl15] PASSED [ 15%] 458s testsuite/MDAnalysisTests/coordinates/test_reader_api.py::TestMultiFrameReader::test_list_TE PASSED [ 15%] 458s testsuite/MDAnalysisTests/coordinates/test_reader_api.py::TestMultiFrameReader::test_array_TE PASSED [ 15%] 458s testsuite/MDAnalysisTests/coordinates/test_reader_api.py::TestMultiFrameReader::test_getitem_IE[5-sl10] PASSED [ 15%] 458s testsuite/MDAnalysisTests/coordinates/test_reader_api.py::TestMultiFrameReader::test_getitem_IE[5-sl11] PASSED [ 15%] 458s testsuite/MDAnalysisTests/coordinates/test_reader_api.py::TestMultiFrameReader::test_getitem_IE[5-sl12] PASSED [ 15%] 458s testsuite/MDAnalysisTests/coordinates/test_reader_api.py::TestMultiFrameReader::test_getitem_IE[5-sl13] PASSED [ 15%] 458s testsuite/MDAnalysisTests/coordinates/test_reader_api.py::TestMultiFrameReader::test_getitem_IE[5-sl14] PASSED [ 15%] 458s testsuite/MDAnalysisTests/coordinates/test_reader_api.py::TestMultiFrameReader::test_getitem_IE[-6-sl10] PASSED [ 15%] 458s testsuite/MDAnalysisTests/coordinates/test_reader_api.py::TestMultiFrameReader::test_getitem_IE[-6-sl11] PASSED [ 15%] 458s testsuite/MDAnalysisTests/coordinates/test_reader_api.py::TestMultiFrameReader::test_getitem_IE[-6-sl12] PASSED [ 15%] 458s testsuite/MDAnalysisTests/coordinates/test_reader_api.py::TestMultiFrameReader::test_getitem_IE[-6-sl13] PASSED [ 15%] 458s testsuite/MDAnalysisTests/coordinates/test_reader_api.py::TestMultiFrameReader::test_getitem_IE[-6-sl14] PASSED [ 15%] 458s testsuite/MDAnalysisTests/coordinates/test_reader_api.py::TestSingleFrameReader::test_required_attributes PASSED [ 15%] 458s testsuite/MDAnalysisTests/coordinates/test_reader_api.py::TestSingleFrameReader::test_close PASSED [ 15%] 458s testsuite/MDAnalysisTests/coordinates/test_reader_api.py::TestSingleFrameReader::test_context PASSED [ 15%] 458s testsuite/MDAnalysisTests/coordinates/test_reader_api.py::TestSingleFrameReader::test_len PASSED [ 15%] 458s testsuite/MDAnalysisTests/coordinates/test_reader_api.py::TestSingleFrameReader::test_raises_StopIteration PASSED [ 15%] 458s testsuite/MDAnalysisTests/coordinates/test_reader_api.py::TestSingleFrameReader::test_next PASSED [ 15%] 458s testsuite/MDAnalysisTests/coordinates/test_reader_api.py::TestSingleFrameReader::test_getitem PASSED [ 15%] 458s testsuite/MDAnalysisTests/coordinates/test_reader_api.py::TestSingleFrameReader::test_getitem_2 PASSED [ 15%] 458s testsuite/MDAnalysisTests/coordinates/test_reader_api.py::TestSingleFrameReader::test_getitem_IE PASSED [ 15%] 458s testsuite/MDAnalysisTests/coordinates/test_reader_api.py::TestSingleFrameReader::test_getitem_IE_2 PASSED [ 15%] 458s testsuite/MDAnalysisTests/coordinates/test_reader_api.py::TestSingleFrameReader::test_slice_1 PASSED [ 15%] 458s testsuite/MDAnalysisTests/coordinates/test_reader_api.py::TestSingleFrameReader::test_slice_2 PASSED [ 15%] 458s testsuite/MDAnalysisTests/coordinates/test_reader_api.py::TestSingleFrameReader::test_reopen PASSED [ 15%] 458s testsuite/MDAnalysisTests/coordinates/test_reader_api.py::TestSingleFrameReader::test_rewind PASSED [ 15%] 458s testsuite/MDAnalysisTests/coordinates/test_reader_api.py::TestSingleFrameReader::test_read_frame PASSED [ 15%] 458s testsuite/MDAnalysisTests/coordinates/test_tng.py::test_pytng_not_present_raises PASSED [ 15%] 458s testsuite/MDAnalysisTests/coordinates/test_tng.py::test_parse_n_atoms_no_pytng PASSED [ 15%] 458s testsuite/MDAnalysisTests/coordinates/test_tng.py::TestTNGCoordinatesTraj::test_n_atoms SKIPPED [ 15%] 458s testsuite/MDAnalysisTests/coordinates/test_tng.py::TestTNGCoordinatesTraj::test_n_frames SKIPPED [ 15%] 458s testsuite/MDAnalysisTests/coordinates/test_tng.py::TestTNGCoordinatesTraj::test_first_frame SKIPPED [ 15%] 458s testsuite/MDAnalysisTests/coordinates/test_tng.py::TestTNGCoordinatesTraj::test_double_close SKIPPED [ 15%] 458s testsuite/MDAnalysisTests/coordinates/test_tng.py::TestTNGCoordinatesTraj::test_ts_dt_matches_reader SKIPPED [ 15%] 458s testsuite/MDAnalysisTests/coordinates/test_tng.py::TestTNGCoordinatesTraj::test_first_dimensions SKIPPED [ 15%] 458s testsuite/MDAnalysisTests/coordinates/test_tng.py::TestTNGCoordinatesTraj::test_changing_dimensions SKIPPED [ 15%] 458s testsuite/MDAnalysisTests/coordinates/test_tng.py::TestTNGCoordinatesTraj::test_volume SKIPPED [ 15%] 458s testsuite/MDAnalysisTests/coordinates/test_tng.py::TestTNGCoordinatesTraj::test_add_same_auxname_raises_ValueError SKIPPED [ 15%] 458s testsuite/MDAnalysisTests/coordinates/test_tng.py::TestTNGCoordinatesTraj::test_remove_auxiliary SKIPPED [ 15%] 458s testsuite/MDAnalysisTests/coordinates/test_tng.py::TestTNGCoordinatesTraj::test_remove_nonexistant_auxiliary_raises_ValueError SKIPPED [ 15%] 458s testsuite/MDAnalysisTests/coordinates/test_tng.py::TestTNGCoordinatesTraj::test_get_aux_attribute SKIPPED [ 15%] 458s testsuite/MDAnalysisTests/coordinates/test_tng.py::TestTNGCoordinatesTraj::test_reload_auxiliaries_from_description SKIPPED [ 15%] 458s testsuite/MDAnalysisTests/coordinates/test_tng.py::TestTNGCoordinatesTraj::test_stop_iter SKIPPED [ 15%] 458s testsuite/MDAnalysisTests/coordinates/test_tng.py::TestTNGCoordinatesTraj::test_transformations_iter SKIPPED [ 15%] 458s testsuite/MDAnalysisTests/coordinates/test_tng.py::TestTNGCoordinatesTraj::test_transformations_2iter SKIPPED [ 15%] 458s testsuite/MDAnalysisTests/coordinates/test_tng.py::TestTNGCoordinatesTraj::test_transformations_slice SKIPPED [ 15%] 458s testsuite/MDAnalysisTests/coordinates/test_tng.py::TestTNGCoordinatesTraj::test_transformations_switch_frame SKIPPED [ 15%] 458s testsuite/MDAnalysisTests/coordinates/test_tng.py::TestTNGCoordinatesTraj::test_transformation_rewind SKIPPED [ 15%] 458s testsuite/MDAnalysisTests/coordinates/test_tng.py::TestTNGCoordinatesTraj::test_transformations_copy SKIPPED [ 15%] 458s testsuite/MDAnalysisTests/coordinates/test_tng.py::TestTNGCoordinatesTraj::test_add_another_transformations_raises_ValueError SKIPPED [ 15%] 458s testsuite/MDAnalysisTests/coordinates/test_tng.py::TestTNGCoordinatesTraj::test_pickle_reader SKIPPED [ 15%] 458s testsuite/MDAnalysisTests/coordinates/test_tng.py::TestTNGCoordinatesTraj::test_frame_collect_all_same SKIPPED [ 15%] 458s testsuite/MDAnalysisTests/coordinates/test_tng.py::TestTNGCoordinatesTraj::test_go_over_last_frame SKIPPED [ 15%] 458s testsuite/MDAnalysisTests/coordinates/test_tng.py::TestTNGCoordinatesTraj::test_reopen SKIPPED [ 15%] 458s testsuite/MDAnalysisTests/coordinates/test_tng.py::TestTNGCoordinatesTraj::test_pickle_next_ts_reader SKIPPED [ 15%] 458s testsuite/MDAnalysisTests/coordinates/test_tng.py::TestTNGCoordinatesTraj::test_pickle_last_ts_reader SKIPPED [ 15%] 458s testsuite/MDAnalysisTests/coordinates/test_tng.py::TestTNGCoordinatesTraj::test_get_writer_1 SKIPPED [ 15%] 458s testsuite/MDAnalysisTests/coordinates/test_tng.py::TestTNGCoordinatesTraj::test_get_writer_2 SKIPPED [ 15%] 458s testsuite/MDAnalysisTests/coordinates/test_tng.py::test_tng_traj_uneven_blocks SKIPPED [ 15%] 458s testsuite/MDAnalysisTests/coordinates/test_tng.py::TestTNGTraj::test_n_atoms SKIPPED [ 15%] 458s testsuite/MDAnalysisTests/coordinates/test_tng.py::TestTNGTraj::test_n_frames SKIPPED [ 15%] 458s testsuite/MDAnalysisTests/coordinates/test_tng.py::TestTNGTraj::test_block_names SKIPPED [ 15%] 458s testsuite/MDAnalysisTests/coordinates/test_tng.py::TestTNGTraj::test_special_blocks SKIPPED [ 15%] 458s testsuite/MDAnalysisTests/coordinates/test_tng.py::TestTNGTraj::test_additional_blocks SKIPPED [ 15%] 458s testsuite/MDAnalysisTests/coordinates/test_tng.py::TestTNGTraj::test_initial_frame_is_0 SKIPPED [ 15%] 458s testsuite/MDAnalysisTests/coordinates/test_tng.py::TestTNGTraj::test_starts_with_first_frame SKIPPED [ 15%] 458s testsuite/MDAnalysisTests/coordinates/test_tng.py::TestTNGTraj::test_rewind SKIPPED [ 15%] 458s testsuite/MDAnalysisTests/coordinates/test_tng.py::TestTNGTraj::test_full_slice SKIPPED [ 15%] 458s testsuite/MDAnalysisTests/coordinates/test_tng.py::TestTNGTraj::test_random_access SKIPPED [ 15%] 458s testsuite/MDAnalysisTests/coordinates/test_tng.py::TestTNGTraj::test_frame_overrun SKIPPED [ 15%] 458s testsuite/MDAnalysisTests/coordinates/test_tng.py::TestTNGTraj::test_positions_first_frame SKIPPED [ 15%] 458s testsuite/MDAnalysisTests/coordinates/test_tng.py::TestTNGTraj::test_box_first_frame SKIPPED [ 15%] 458s testsuite/MDAnalysisTests/coordinates/test_tng.py::TestTNGTraj::test_positions_last_frame SKIPPED [ 15%] 458s testsuite/MDAnalysisTests/coordinates/test_tng.py::TestTNGTraj::test_box_last_frame SKIPPED [ 15%] 458s testsuite/MDAnalysisTests/coordinates/test_tng.py::TestTNGTraj::test_step[0] SKIPPED [ 15%] 458s testsuite/MDAnalysisTests/coordinates/test_tng.py::TestTNGTraj::test_step[20] SKIPPED [ 15%] 458s testsuite/MDAnalysisTests/coordinates/test_tng.py::TestTNGTraj::test_step[50] SKIPPED [ 15%] 458s testsuite/MDAnalysisTests/coordinates/test_tng.py::TestTNGTraj::test_step[100] SKIPPED [ 15%] 458s testsuite/MDAnalysisTests/coordinates/test_tng.py::TestTNGTraj::test_lambda_in_ts SKIPPED [ 15%] 458s testsuite/MDAnalysisTests/coordinates/test_tng.py::TestTNGTraj::test_read_box_fail_strange_step SKIPPED [ 15%] 458s testsuite/MDAnalysisTests/coordinates/test_tng.py::TestTNGTraj::test_read_pos_fail_strange_step SKIPPED [ 15%] 458s testsuite/MDAnalysisTests/coordinates/test_tng.py::TestTNGTraj::test_additional_block_read_fails SKIPPED [ 15%] 458s testsuite/MDAnalysisTests/coordinates/test_tng.py::TestTNGTraj::test_parse_n_atoms SKIPPED [ 15%] 458s testsuite/MDAnalysisTests/coordinates/test_tng.py::TestTNGTraj_vels_forces::test_n_atoms SKIPPED [ 15%] 458s testsuite/MDAnalysisTests/coordinates/test_tng.py::TestTNGTraj_vels_forces::test_n_frames SKIPPED [ 15%] 458s testsuite/MDAnalysisTests/coordinates/test_tng.py::TestTNGTraj_vels_forces::test_block_names SKIPPED [ 15%] 458s testsuite/MDAnalysisTests/coordinates/test_tng.py::TestTNGTraj_vels_forces::test_special_blocks SKIPPED [ 15%] 458s testsuite/MDAnalysisTests/coordinates/test_tng.py::TestTNGTraj_vels_forces::test_read_vels_fail_strange_step SKIPPED [ 15%] 458s testsuite/MDAnalysisTests/coordinates/test_tng.py::TestTNGTraj_vels_forces::test_read_force_fail_strange_step SKIPPED [ 15%] 458s testsuite/MDAnalysisTests/coordinates/test_tng.py::test_writer_raises_notimpl SKIPPED [ 15%] 458s testsuite/MDAnalysisTests/coordinates/test_trc.py::TestTRCReaderVacuumBox::test_initial_frame_is_0 PASSED [ 15%] 458s testsuite/MDAnalysisTests/coordinates/test_trc.py::TestTRCReaderVacuumBox::test_trc_positions PASSED [ 15%] 458s testsuite/MDAnalysisTests/coordinates/test_trc.py::TestTRCReaderVacuumBox::test_trc_dimensions PASSED [ 15%] 458s testsuite/MDAnalysisTests/coordinates/test_trc.py::TestTRCReaderVacuumBox::test_trc_n_frames PASSED [ 15%] 458s testsuite/MDAnalysisTests/coordinates/test_trc.py::TestTRCReaderVacuumBox::test_trc_n_atoms PASSED [ 15%] 458s testsuite/MDAnalysisTests/coordinates/test_trc.py::TestTRCReaderVacuumBox::test_trc_frame PASSED [ 15%] 458s testsuite/MDAnalysisTests/coordinates/test_trc.py::TestTRCReaderVacuumBox::test_trc_time PASSED [ 15%] 458s testsuite/MDAnalysisTests/coordinates/test_trc.py::TestTRCReaderVacuumBox::test_trc_dt PASSED [ 15%] 458s testsuite/MDAnalysisTests/coordinates/test_trc.py::TestTRCReaderVacuumBox::test_trc_data_step PASSED [ 15%] 458s testsuite/MDAnalysisTests/coordinates/test_trc.py::TestTRCReaderVacuumBox::test_periodic PASSED [ 15%] 458s testsuite/MDAnalysisTests/coordinates/test_trc.py::TestTRCReaderVacuumBox::test_rewind PASSED [ 15%] 458s testsuite/MDAnalysisTests/coordinates/test_trc.py::TestTRCReaderVacuumBox::test_random_access PASSED [ 15%] 458s testsuite/MDAnalysisTests/coordinates/test_trc.py::TestTRCReaderVacuumBox::test_read_frame_reopens PASSED [ 15%] 458s testsuite/MDAnalysisTests/coordinates/test_trc.py::TestTRCReaderSolvatedBox::test_trc_n_atoms PASSED [ 15%] 458s testsuite/MDAnalysisTests/coordinates/test_trc.py::TestTRCReaderSolvatedBox::test_periodic PASSED [ 15%] 458s testsuite/MDAnalysisTests/coordinates/test_trc.py::TestTRCReaderSolvatedBox::test_trc_dimensions PASSED [ 15%] 458s testsuite/MDAnalysisTests/coordinates/test_trc.py::TestTRCReaderSolvatedBox::test_open_twice PASSED [ 15%] 458s testsuite/MDAnalysisTests/coordinates/test_trc.py::TestTRCReaderSolvatedBoxNoConvert::test_trc_dimensions PASSED [ 15%] 458s testsuite/MDAnalysisTests/coordinates/test_trc.py::TestTRCReaderTriclinicBox::test_trc_n_atoms PASSED [ 15%] 458s testsuite/MDAnalysisTests/coordinates/test_trc.py::TestTRCReaderTriclinicBox::test_periodic PASSED [ 15%] 458s testsuite/MDAnalysisTests/coordinates/test_trc.py::TestTRCReaderTriclinicBox::test_trc_dimensions PASSED [ 15%] 458s testsuite/MDAnalysisTests/coordinates/test_trc.py::TestTRCReaderTriclinicBox::test_trc_distances PASSED [ 15%] 458s testsuite/MDAnalysisTests/coordinates/test_trc.py::TestTRCReaderTruncOctBox::test_universe PASSED [ 15%] 458s testsuite/MDAnalysisTests/coordinates/test_trc.py::TestTRCGenboxOrigin::test_universe PASSED [ 15%] 458s testsuite/MDAnalysisTests/coordinates/test_trc.py::TestTRCGenboxEuler::test_universe PASSED [ 15%] 458s testsuite/MDAnalysisTests/coordinates/test_trc.py::TestTRCEmptyFile::test_universe PASSED [ 15%] 458s testsuite/MDAnalysisTests/coordinates/test_trc.py::TestTRCReaderClusterTrajectory::test_trc_n_atoms PASSED [ 15%] 458s testsuite/MDAnalysisTests/coordinates/test_trc.py::TestTRCReaderClusterTrajectory::test_periodic PASSED [ 15%] 458s testsuite/MDAnalysisTests/coordinates/test_trc.py::TestTRCReaderClusterTrajectory::test_trc_dimensions PASSED [ 15%] 458s testsuite/MDAnalysisTests/coordinates/test_trc.py::TestTRCReaderClusterTrajectory::test_trc_n_frames PASSED [ 15%] 458s testsuite/MDAnalysisTests/coordinates/test_trc.py::TestTRCReaderClusterTrajectory::test_trc_frame PASSED [ 15%] 458s testsuite/MDAnalysisTests/coordinates/test_trc.py::TestTRCReaderClusterTrajectory::test_trc_time PASSED [ 15%] 458s testsuite/MDAnalysisTests/coordinates/test_trj.py::TestTRJReader::test_load_prm PASSED [ 15%] 458s testsuite/MDAnalysisTests/coordinates/test_trj.py::TestTRJReader::test_n_atoms PASSED [ 15%] 458s testsuite/MDAnalysisTests/coordinates/test_trj.py::TestTRJReader::test_n_frames PASSED [ 15%] 458s testsuite/MDAnalysisTests/coordinates/test_trj.py::TestTRJReader::test_periodic PASSED [ 15%] 458s testsuite/MDAnalysisTests/coordinates/test_trj.py::TestTRJReader::test_amber_proteinselection PASSED [ 15%] 458s testsuite/MDAnalysisTests/coordinates/test_trj.py::TestTRJReader::test_sum_centres_of_geometry PASSED [ 15%] 458s testsuite/MDAnalysisTests/coordinates/test_trj.py::TestTRJReader::test_initial_frame_is_0 PASSED [ 15%] 458s testsuite/MDAnalysisTests/coordinates/test_trj.py::TestTRJReader::test_starts_with_first_frame PASSED [ 15%] 458s testsuite/MDAnalysisTests/coordinates/test_trj.py::TestTRJReader::test_rewind PASSED [ 15%] 458s testsuite/MDAnalysisTests/coordinates/test_trj.py::TestTRJReader::test_full_slice PASSED [ 15%] 458s testsuite/MDAnalysisTests/coordinates/test_trj.py::TestTRJReader::test_random_access PASSED [ 15%] 458s testsuite/MDAnalysisTests/coordinates/test_trj.py::TestTRJReader::test_read_frame_reopens PASSED [ 15%] 458s testsuite/MDAnalysisTests/coordinates/test_trj.py::TestBzippedTRJReader::test_load_prm PASSED [ 15%] 458s testsuite/MDAnalysisTests/coordinates/test_trj.py::TestBzippedTRJReader::test_n_atoms PASSED [ 15%] 458s testsuite/MDAnalysisTests/coordinates/test_trj.py::TestBzippedTRJReader::test_n_frames PASSED [ 15%] 458s testsuite/MDAnalysisTests/coordinates/test_trj.py::TestBzippedTRJReader::test_periodic PASSED [ 15%] 458s testsuite/MDAnalysisTests/coordinates/test_trj.py::TestBzippedTRJReader::test_amber_proteinselection PASSED [ 15%] 458s testsuite/MDAnalysisTests/coordinates/test_trj.py::TestBzippedTRJReader::test_sum_centres_of_geometry PASSED [ 15%] 458s testsuite/MDAnalysisTests/coordinates/test_trj.py::TestBzippedTRJReader::test_initial_frame_is_0 PASSED [ 15%] 458s testsuite/MDAnalysisTests/coordinates/test_trj.py::TestBzippedTRJReader::test_starts_with_first_frame PASSED [ 15%] 458s testsuite/MDAnalysisTests/coordinates/test_trj.py::TestBzippedTRJReader::test_rewind PASSED [ 15%] 458s testsuite/MDAnalysisTests/coordinates/test_trj.py::TestBzippedTRJReader::test_full_slice PASSED [ 15%] 458s testsuite/MDAnalysisTests/coordinates/test_trj.py::TestBzippedTRJReader::test_random_access PASSED [ 15%] 458s testsuite/MDAnalysisTests/coordinates/test_trj.py::TestBzippedTRJReader::test_read_frame_reopens PASSED [ 15%] 458s testsuite/MDAnalysisTests/coordinates/test_trj.py::TestBzippedTRJReaderPBC::test_load_prm PASSED [ 15%] 458s testsuite/MDAnalysisTests/coordinates/test_trj.py::TestBzippedTRJReaderPBC::test_n_atoms PASSED [ 16%] 459s testsuite/MDAnalysisTests/coordinates/test_trj.py::TestBzippedTRJReaderPBC::test_n_frames PASSED [ 16%] 459s testsuite/MDAnalysisTests/coordinates/test_trj.py::TestBzippedTRJReaderPBC::test_periodic PASSED [ 16%] 459s testsuite/MDAnalysisTests/coordinates/test_trj.py::TestBzippedTRJReaderPBC::test_amber_proteinselection PASSED [ 16%] 459s testsuite/MDAnalysisTests/coordinates/test_trj.py::TestBzippedTRJReaderPBC::test_sum_centres_of_geometry PASSED [ 16%] 459s testsuite/MDAnalysisTests/coordinates/test_trj.py::TestBzippedTRJReaderPBC::test_initial_frame_is_0 PASSED [ 16%] 459s testsuite/MDAnalysisTests/coordinates/test_trj.py::TestBzippedTRJReaderPBC::test_starts_with_first_frame PASSED [ 16%] 459s testsuite/MDAnalysisTests/coordinates/test_trj.py::TestBzippedTRJReaderPBC::test_rewind PASSED [ 16%] 459s testsuite/MDAnalysisTests/coordinates/test_trj.py::TestBzippedTRJReaderPBC::test_full_slice PASSED [ 16%] 459s testsuite/MDAnalysisTests/coordinates/test_trj.py::TestBzippedTRJReaderPBC::test_random_access PASSED [ 16%] 459s testsuite/MDAnalysisTests/coordinates/test_trj.py::test_trj_no_natoms PASSED [ 16%] 459s testsuite/MDAnalysisTests/coordinates/test_trz.py::test_deprecated_trz_reader PASSED [ 16%] 459s testsuite/MDAnalysisTests/coordinates/test_trz.py::test_deprecated_trz_writer PASSED [ 16%] 459s testsuite/MDAnalysisTests/coordinates/test_trz.py::TestTRZReader::test_load_trz PASSED [ 16%] 459s testsuite/MDAnalysisTests/coordinates/test_trz.py::TestTRZReader::test_next_trz PASSED [ 16%] 459s testsuite/MDAnalysisTests/coordinates/test_trz.py::TestTRZReader::test_rewind_trz PASSED [ 16%] 459s testsuite/MDAnalysisTests/coordinates/test_trz.py::TestTRZReader::test_n_frames PASSED [ 16%] 459s testsuite/MDAnalysisTests/coordinates/test_trz.py::TestTRZReader::test_seeking PASSED [ 16%] 459s testsuite/MDAnalysisTests/coordinates/test_trz.py::TestTRZReader::test_volume PASSED [ 16%] 459s testsuite/MDAnalysisTests/coordinates/test_trz.py::TestTRZReader::test_unitcell PASSED [ 16%] 459s testsuite/MDAnalysisTests/coordinates/test_trz.py::TestTRZReader::test_coordinates PASSED [ 16%] 459s testsuite/MDAnalysisTests/coordinates/test_trz.py::TestTRZReader::test_velocities PASSED [ 16%] 459s testsuite/MDAnalysisTests/coordinates/test_trz.py::TestTRZReader::test_delta PASSED [ 16%] 459s testsuite/MDAnalysisTests/coordinates/test_trz.py::TestTRZReader::test_title PASSED [ 16%] 459s testsuite/MDAnalysisTests/coordinates/test_trz.py::TestTRZReader::test_get_writer PASSED [ 16%] 460s testsuite/MDAnalysisTests/coordinates/test_trz.py::TestTRZReader::test_get_writer_2 PASSED [ 16%] 460s testsuite/MDAnalysisTests/coordinates/test_trz.py::TestTRZReader::test_get_wrong_n_atoms PASSED [ 16%] 460s testsuite/MDAnalysisTests/coordinates/test_trz.py::TestTRZReader::test_read_zero_box PASSED [ 16%] 460s testsuite/MDAnalysisTests/coordinates/test_trz.py::TestTRZWriter::test_write_trajectory PASSED [ 16%] 460s testsuite/MDAnalysisTests/coordinates/test_trz.py::TestTRZWriter::test_long_title PASSED [ 16%] 460s testsuite/MDAnalysisTests/coordinates/test_trz.py::TestTRZWriter::test_no_box_warning PASSED [ 16%] 460s testsuite/MDAnalysisTests/coordinates/test_trz.py::TestTRZWriter2::test_writer_trz_from_other PASSED [ 16%] 460s testsuite/MDAnalysisTests/coordinates/test_trz.py::TestTRZWriter2::test_no_dt_warning PASSED [ 16%] 460s testsuite/MDAnalysisTests/coordinates/test_trz.py::TestWrite_Partial_Timestep::test_write_trajectory PASSED [ 16%] 460s testsuite/MDAnalysisTests/coordinates/test_txyz.py::test_txyz_positions PASSED [ 16%] 460s testsuite/MDAnalysisTests/coordinates/test_txyz.py::test_arc_positions PASSED [ 16%] 460s testsuite/MDAnalysisTests/coordinates/test_txyz.py::test_arc_positions_frame_2 PASSED [ 16%] 460s testsuite/MDAnalysisTests/coordinates/test_txyz.py::test_arc_traj_length PASSED [ 16%] 460s testsuite/MDAnalysisTests/coordinates/test_txyz.py::test_arcpbc_traj_length PASSED [ 16%] 460s testsuite/MDAnalysisTests/coordinates/test_txyz.py::test_pbc_boxsize PASSED [ 16%] 460s testsuite/MDAnalysisTests/coordinates/test_windows.py::TestTRJReader::test_load_prm PASSED [ 16%] 460s testsuite/MDAnalysisTests/coordinates/test_windows.py::TestTRJReader::test_n_atoms PASSED [ 16%] 460s testsuite/MDAnalysisTests/coordinates/test_windows.py::TestTRJReader::test_n_frames PASSED [ 16%] 460s testsuite/MDAnalysisTests/coordinates/test_windows.py::TestTRJReader::test_periodic PASSED [ 16%] 460s testsuite/MDAnalysisTests/coordinates/test_windows.py::TestTRJReader::test_amber_proteinselection PASSED [ 16%] 460s testsuite/MDAnalysisTests/coordinates/test_windows.py::TestTRJReader::test_sum_centres_of_geometry PASSED [ 16%] 460s testsuite/MDAnalysisTests/coordinates/test_windows.py::TestTRJReader::test_initial_frame_is_0 PASSED [ 16%] 460s testsuite/MDAnalysisTests/coordinates/test_windows.py::TestTRJReader::test_starts_with_first_frame PASSED [ 16%] 460s testsuite/MDAnalysisTests/coordinates/test_windows.py::TestTRJReader::test_rewind PASSED [ 16%] 460s testsuite/MDAnalysisTests/coordinates/test_windows.py::TestTRJReader::test_full_slice PASSED [ 16%] 460s testsuite/MDAnalysisTests/coordinates/test_windows.py::TestTRJReader::test_random_access PASSED [ 16%] 460s testsuite/MDAnalysisTests/coordinates/test_windows.py::TestTRJReader::test_read_frame_reopens PASSED [ 16%] 460s testsuite/MDAnalysisTests/coordinates/test_windows.py::TestDLPolyHistory::test_len PASSED [ 16%] 460s testsuite/MDAnalysisTests/coordinates/test_windows.py::TestDLPolyHistory::test_getting PASSED [ 16%] 460s testsuite/MDAnalysisTests/coordinates/test_windows.py::TestDLPolyHistory::test_slicing PASSED [ 16%] 460s testsuite/MDAnalysisTests/coordinates/test_windows.py::TestDLPolyHistory::test_slicing_2 PASSED [ 16%] 460s testsuite/MDAnalysisTests/coordinates/test_windows.py::TestDLPolyHistory::test_position PASSED [ 16%] 460s testsuite/MDAnalysisTests/coordinates/test_windows.py::TestDLPolyHistory::test_velocity PASSED [ 16%] 460s testsuite/MDAnalysisTests/coordinates/test_windows.py::TestDLPolyHistory::test_force PASSED [ 16%] 460s testsuite/MDAnalysisTests/coordinates/test_windows.py::TestDLPolyHistory::test_unitcell PASSED [ 16%] 460s testsuite/MDAnalysisTests/coordinates/test_windows.py::TestLammpsDumpReader::test_n_atoms[ascii] PASSED [ 16%] 460s testsuite/MDAnalysisTests/coordinates/test_windows.py::TestLammpsDumpReader::test_n_atoms[bz2] PASSED [ 16%] 460s testsuite/MDAnalysisTests/coordinates/test_windows.py::TestLammpsDumpReader::test_n_atoms[gzip] PASSED [ 16%] 460s testsuite/MDAnalysisTests/coordinates/test_windows.py::TestLammpsDumpReader::test_length[ascii] PASSED [ 16%] 460s testsuite/MDAnalysisTests/coordinates/test_windows.py::TestLammpsDumpReader::test_length[bz2] PASSED [ 16%] 460s testsuite/MDAnalysisTests/coordinates/test_windows.py::TestLammpsDumpReader::test_length[gzip] PASSED [ 16%] 460s testsuite/MDAnalysisTests/coordinates/test_windows.py::TestLammpsDumpReader::test_seeking[ascii] PASSED [ 16%] 460s testsuite/MDAnalysisTests/coordinates/test_windows.py::TestLammpsDumpReader::test_seeking[bz2] PASSED [ 16%] 460s testsuite/MDAnalysisTests/coordinates/test_windows.py::TestLammpsDumpReader::test_seeking[gzip] PASSED [ 16%] 460s testsuite/MDAnalysisTests/coordinates/test_windows.py::TestLammpsDumpReader::test_boxsize[ascii] PASSED [ 16%] 460s testsuite/MDAnalysisTests/coordinates/test_windows.py::TestLammpsDumpReader::test_boxsize[bz2] PASSED [ 16%] 460s testsuite/MDAnalysisTests/coordinates/test_windows.py::TestLammpsDumpReader::test_boxsize[gzip] PASSED [ 16%] 460s testsuite/MDAnalysisTests/coordinates/test_windows.py::TestLammpsDumpReader::test_atom_reordering[ascii] PASSED [ 16%] 460s testsuite/MDAnalysisTests/coordinates/test_windows.py::TestLammpsDumpReader::test_atom_reordering[bz2] PASSED [ 16%] 460s testsuite/MDAnalysisTests/coordinates/test_windows.py::TestLammpsDumpReader::test_atom_reordering[gzip] PASSED [ 16%] 460s testsuite/MDAnalysisTests/coordinates/test_windows.py::TestWinLammpsDump::test_n_atoms PASSED [ 16%] 460s testsuite/MDAnalysisTests/coordinates/test_windows.py::TestWinLammpsDump::test_length PASSED [ 16%] 460s testsuite/MDAnalysisTests/coordinates/test_windows.py::TestWinLammpsDump::test_seeking PASSED [ 16%] 460s testsuite/MDAnalysisTests/coordinates/test_windows.py::TestWinLammpsDump::test_boxsize PASSED [ 16%] 460s testsuite/MDAnalysisTests/coordinates/test_windows.py::TestWinLammpsDump::test_atom_reordering PASSED [ 16%] 460s testsuite/MDAnalysisTests/coordinates/test_windows.py::TestWinPDB::test_n_frames PASSED [ 16%] 460s testsuite/MDAnalysisTests/coordinates/test_windows.py::TestWinPDB::test_rewind PASSED [ 16%] 460s testsuite/MDAnalysisTests/coordinates/test_windows.py::TestWinPDB::test_slice_iteration PASSED [ 16%] 460s testsuite/MDAnalysisTests/coordinates/test_windows.py::TestWinDLPolyHistory::test_len PASSED [ 16%] 460s testsuite/MDAnalysisTests/coordinates/test_windows.py::TestWinDLPolyHistory::test_getting PASSED [ 16%] 460s testsuite/MDAnalysisTests/coordinates/test_windows.py::TestWinDLPolyHistory::test_slicing PASSED [ 16%] 460s testsuite/MDAnalysisTests/coordinates/test_windows.py::TestWinDLPolyHistory::test_slicing_2 PASSED [ 16%] 460s testsuite/MDAnalysisTests/coordinates/test_windows.py::TestWinDLPolyHistory::test_position PASSED [ 16%] 460s testsuite/MDAnalysisTests/coordinates/test_windows.py::TestWinDLPolyHistory::test_velocity PASSED [ 16%] 460s testsuite/MDAnalysisTests/coordinates/test_windows.py::TestWinDLPolyHistory::test_force PASSED [ 16%] 460s testsuite/MDAnalysisTests/coordinates/test_windows.py::TestWinDLPolyHistory::test_unitcell PASSED [ 16%] 460s testsuite/MDAnalysisTests/coordinates/test_windows.py::TestWinTRJ::test_load_prm PASSED [ 16%] 460s testsuite/MDAnalysisTests/coordinates/test_windows.py::TestWinTRJ::test_n_atoms PASSED [ 16%] 461s testsuite/MDAnalysisTests/coordinates/test_windows.py::TestWinTRJ::test_n_frames PASSED [ 16%] 461s testsuite/MDAnalysisTests/coordinates/test_windows.py::TestWinTRJ::test_periodic PASSED [ 16%] 461s testsuite/MDAnalysisTests/coordinates/test_windows.py::TestWinTRJ::test_amber_proteinselection PASSED [ 16%] 461s testsuite/MDAnalysisTests/coordinates/test_windows.py::TestWinTRJ::test_sum_centres_of_geometry PASSED [ 16%] 461s testsuite/MDAnalysisTests/coordinates/test_windows.py::TestWinTRJ::test_initial_frame_is_0 PASSED [ 16%] 461s testsuite/MDAnalysisTests/coordinates/test_windows.py::TestWinTRJ::test_starts_with_first_frame PASSED [ 16%] 461s testsuite/MDAnalysisTests/coordinates/test_windows.py::TestWinTRJ::test_rewind PASSED [ 16%] 461s testsuite/MDAnalysisTests/coordinates/test_windows.py::TestWinTRJ::test_full_slice PASSED [ 16%] 461s testsuite/MDAnalysisTests/coordinates/test_windows.py::TestWinTRJ::test_random_access PASSED [ 16%] 461s testsuite/MDAnalysisTests/coordinates/test_windows.py::TestWinTRJ::test_read_frame_reopens PASSED [ 16%] 461s testsuite/MDAnalysisTests/coordinates/test_windows.py::TestWinARC::test_n_frames PASSED [ 16%] 461s testsuite/MDAnalysisTests/coordinates/test_windows.py::TestWinARC::test_positions PASSED [ 16%] 461s testsuite/MDAnalysisTests/coordinates/test_windows.py::TestWinARC::test_positions_2 PASSED [ 16%] 461s testsuite/MDAnalysisTests/coordinates/test_writer_api.py::test_ts_error[CRDWriter] PASSED [ 16%] 461s testsuite/MDAnalysisTests/coordinates/test_writer_api.py::test_ts_error[ChemfilesWriter] SKIPPED [ 16%] 461s testsuite/MDAnalysisTests/coordinates/test_writer_api.py::test_ts_error[DATAWriter] SKIPPED [ 16%] 461s testsuite/MDAnalysisTests/coordinates/test_writer_api.py::test_ts_error[DCDWriter0] PASSED [ 16%] 461s testsuite/MDAnalysisTests/coordinates/test_writer_api.py::test_ts_error[DCDWriter1] PASSED [ 16%] 461s testsuite/MDAnalysisTests/coordinates/test_writer_api.py::test_ts_error[FHIAIMSWriter] PASSED [ 16%] 461s testsuite/MDAnalysisTests/coordinates/test_writer_api.py::test_ts_error[GROWriter] PASSED [ 16%] 461s testsuite/MDAnalysisTests/coordinates/test_writer_api.py::test_ts_error[H5MDWriter] PASSED [ 16%] 461s testsuite/MDAnalysisTests/coordinates/test_writer_api.py::test_ts_error[MOL2Writer] PASSED [ 16%] 461s testsuite/MDAnalysisTests/coordinates/test_writer_api.py::test_ts_error[MultiPDBWriter] PASSED [ 16%] 461s testsuite/MDAnalysisTests/coordinates/test_writer_api.py::test_ts_error[NAMDBINWriter] PASSED [ 16%] 461s testsuite/MDAnalysisTests/coordinates/test_writer_api.py::test_ts_error[NCDFWriter] PASSED [ 16%] 461s testsuite/MDAnalysisTests/coordinates/test_writer_api.py::test_ts_error[NullWriter] PASSED [ 16%] 461s testsuite/MDAnalysisTests/coordinates/test_writer_api.py::test_ts_error[PDBQTWriter] PASSED [ 16%] 461s testsuite/MDAnalysisTests/coordinates/test_writer_api.py::test_ts_error[PDBWriter] PASSED [ 16%] 461s testsuite/MDAnalysisTests/coordinates/test_writer_api.py::test_ts_error[PQRWriter] PASSED [ 16%] 461s testsuite/MDAnalysisTests/coordinates/test_writer_api.py::test_ts_error[TRRWriter] PASSED [ 16%] 461s testsuite/MDAnalysisTests/coordinates/test_writer_api.py::test_ts_error[TRZWriter] PASSED [ 16%] 461s testsuite/MDAnalysisTests/coordinates/test_writer_api.py::test_ts_error[XTCWriter] PASSED [ 16%] 461s testsuite/MDAnalysisTests/coordinates/test_writer_api.py::test_ts_error[XYZWriter] PASSED [ 16%] 461s testsuite/MDAnalysisTests/coordinates/test_writer_api.py::test_write_with_atomgroup[CRDWriter] PASSED [ 16%] 461s testsuite/MDAnalysisTests/coordinates/test_writer_api.py::test_write_with_atomgroup[ChemfilesWriter] SKIPPED [ 16%] 461s testsuite/MDAnalysisTests/coordinates/test_writer_api.py::test_write_with_atomgroup[DATAWriter] SKIPPED [ 16%] 461s testsuite/MDAnalysisTests/coordinates/test_writer_api.py::test_write_with_atomgroup[DCDWriter0] PASSED [ 16%] 461s testsuite/MDAnalysisTests/coordinates/test_writer_api.py::test_write_with_atomgroup[DCDWriter1] PASSED [ 16%] 461s testsuite/MDAnalysisTests/coordinates/test_writer_api.py::test_write_with_atomgroup[FHIAIMSWriter] PASSED [ 16%] 461s testsuite/MDAnalysisTests/coordinates/test_writer_api.py::test_write_with_atomgroup[GROWriter] PASSED [ 16%] 461s testsuite/MDAnalysisTests/coordinates/test_writer_api.py::test_write_with_atomgroup[H5MDWriter] PASSED [ 16%] 461s testsuite/MDAnalysisTests/coordinates/test_writer_api.py::test_write_with_atomgroup[MOL2Writer] SKIPPED [ 16%] 461s testsuite/MDAnalysisTests/coordinates/test_writer_api.py::test_write_with_atomgroup[MultiPDBWriter] PASSED [ 16%] 461s testsuite/MDAnalysisTests/coordinates/test_writer_api.py::test_write_with_atomgroup[NAMDBINWriter] PASSED [ 16%] 461s testsuite/MDAnalysisTests/coordinates/test_writer_api.py::test_write_with_atomgroup[NCDFWriter] PASSED [ 16%] 461s testsuite/MDAnalysisTests/coordinates/test_writer_api.py::test_write_with_atomgroup[NullWriter] PASSED [ 16%] 461s testsuite/MDAnalysisTests/coordinates/test_writer_api.py::test_write_with_atomgroup[PDBQTWriter] PASSED [ 16%] 461s testsuite/MDAnalysisTests/coordinates/test_writer_api.py::test_write_with_atomgroup[PDBWriter] PASSED [ 16%] 461s testsuite/MDAnalysisTests/coordinates/test_writer_api.py::test_write_with_atomgroup[PQRWriter] PASSED [ 16%] 461s testsuite/MDAnalysisTests/coordinates/test_writer_api.py::test_write_with_atomgroup[TRRWriter] PASSED [ 16%] 461s testsuite/MDAnalysisTests/coordinates/test_writer_api.py::test_write_with_atomgroup[TRZWriter] PASSED [ 16%] 461s testsuite/MDAnalysisTests/coordinates/test_writer_api.py::test_write_with_atomgroup[XTCWriter] PASSED [ 16%] 461s testsuite/MDAnalysisTests/coordinates/test_writer_api.py::test_write_with_atomgroup[XYZWriter] PASSED [ 16%] 461s testsuite/MDAnalysisTests/coordinates/test_writer_api.py::test_write_with_universe[CRDWriter] PASSED [ 16%] 461s testsuite/MDAnalysisTests/coordinates/test_writer_api.py::test_write_with_universe[ChemfilesWriter] SKIPPED [ 16%] 461s testsuite/MDAnalysisTests/coordinates/test_writer_api.py::test_write_with_universe[DATAWriter] SKIPPED [ 16%] 461s testsuite/MDAnalysisTests/coordinates/test_writer_api.py::test_write_with_universe[DCDWriter0] PASSED [ 16%] 461s testsuite/MDAnalysisTests/coordinates/test_writer_api.py::test_write_with_universe[DCDWriter1] PASSED [ 16%] 461s testsuite/MDAnalysisTests/coordinates/test_writer_api.py::test_write_with_universe[FHIAIMSWriter] PASSED [ 16%] 461s testsuite/MDAnalysisTests/coordinates/test_writer_api.py::test_write_with_universe[GROWriter] PASSED [ 16%] 461s testsuite/MDAnalysisTests/coordinates/test_writer_api.py::test_write_with_universe[H5MDWriter] PASSED [ 16%] 461s testsuite/MDAnalysisTests/coordinates/test_writer_api.py::test_write_with_universe[MOL2Writer] SKIPPED [ 16%] 461s testsuite/MDAnalysisTests/coordinates/test_writer_api.py::test_write_with_universe[MultiPDBWriter] PASSED [ 16%] 461s testsuite/MDAnalysisTests/coordinates/test_writer_api.py::test_write_with_universe[NAMDBINWriter] PASSED [ 16%] 461s testsuite/MDAnalysisTests/coordinates/test_writer_api.py::test_write_with_universe[NCDFWriter] PASSED [ 16%] 461s testsuite/MDAnalysisTests/coordinates/test_writer_api.py::test_write_with_universe[NullWriter] PASSED [ 16%] 461s testsuite/MDAnalysisTests/coordinates/test_writer_api.py::test_write_with_universe[PDBQTWriter] PASSED [ 16%] 461s testsuite/MDAnalysisTests/coordinates/test_writer_api.py::test_write_with_universe[PDBWriter] PASSED [ 16%] 461s testsuite/MDAnalysisTests/coordinates/test_writer_api.py::test_write_with_universe[PQRWriter] PASSED [ 16%] 461s testsuite/MDAnalysisTests/coordinates/test_writer_api.py::test_write_with_universe[TRRWriter] PASSED [ 16%] 461s testsuite/MDAnalysisTests/coordinates/test_writer_api.py::test_write_with_universe[TRZWriter] PASSED [ 16%] 461s testsuite/MDAnalysisTests/coordinates/test_writer_api.py::test_write_with_universe[XTCWriter] PASSED [ 16%] 461s testsuite/MDAnalysisTests/coordinates/test_writer_api.py::test_write_with_universe[XYZWriter] PASSED [ 16%] 461s testsuite/MDAnalysisTests/coordinates/test_writer_registration.py::TestWriterCreation::test_default_multiframe PASSED [ 16%] 461s testsuite/MDAnalysisTests/coordinates/test_writer_registration.py::TestWriterCreation::test_singleframe PASSED [ 16%] 461s testsuite/MDAnalysisTests/coordinates/test_writer_registration.py::TestWriterCreation::test_multiframe_magic2 PASSED [ 16%] 461s testsuite/MDAnalysisTests/coordinates/test_writer_registration.py::TestWriterCreation::test_singleframe_magic2 PASSED [ 16%] 461s testsuite/MDAnalysisTests/coordinates/test_xdr.py::test_offsets_filename[foo.xtc-kwargs0-.foo.xtc_offsets.npz] PASSED [ 16%] 461s testsuite/MDAnalysisTests/coordinates/test_xdr.py::test_offsets_filename[foo.xtc-kwargs1-.foo.xtc_offsets.npz] PASSED [ 16%] 461s testsuite/MDAnalysisTests/coordinates/test_xdr.py::test_offsets_filename[bar.0001.trr-kwargs2-.bar.0001.trr_offsets.npzzzz] PASSED [ 16%] 461s testsuite/MDAnalysisTests/coordinates/test_xdr.py::TestTRRReader_Sub::test_load_new_raises_ValueError PASSED [ 16%] 461s testsuite/MDAnalysisTests/coordinates/test_xdr.py::TestTRRReader_Sub::test_sub_coordinates PASSED [ 16%] 461s testsuite/MDAnalysisTests/coordinates/test_xdr.py::TestXTCReader_Sub::test_load_new_raises_ValueError PASSED [ 16%] 461s testsuite/MDAnalysisTests/coordinates/test_xdr.py::TestXTCReader_Sub::test_sub_coordinates PASSED [ 16%] 461s testsuite/MDAnalysisTests/coordinates/test_xdr.py::TestXTCReader::test_rewind_xdrtrj PASSED [ 16%] 461s testsuite/MDAnalysisTests/coordinates/test_xdr.py::TestXTCReader::test_next_xdrtrj PASSED [ 16%] 461s testsuite/MDAnalysisTests/coordinates/test_xdr.py::TestXTCReader::test_jump_xdrtrj PASSED [ 16%] 461s testsuite/MDAnalysisTests/coordinates/test_xdr.py::TestXTCReader::test_jump_lastframe_xdrtrj PASSED [ 16%] 461s testsuite/MDAnalysisTests/coordinates/test_xdr.py::TestXTCReader::test_slice_xdrtrj PASSED [ 16%] 461s testsuite/MDAnalysisTests/coordinates/test_xdr.py::TestXTCReader::test_reverse_xdrtrj PASSED [ 16%] 461s testsuite/MDAnalysisTests/coordinates/test_xdr.py::TestXTCReader::test_coordinates PASSED [ 16%] 461s testsuite/MDAnalysisTests/coordinates/test_xdr.py::TestXTCReader::test_unitcell PASSED [ 16%] 461s testsuite/MDAnalysisTests/coordinates/test_xdr.py::TestXTCReader::test_volume PASSED [ 17%] 461s testsuite/MDAnalysisTests/coordinates/test_xdr.py::TestXTCReader::test_totaltime PASSED [ 17%] 461s testsuite/MDAnalysisTests/coordinates/test_xdr.py::TestXTCReader::test_frame PASSED [ 17%] 461s testsuite/MDAnalysisTests/coordinates/test_xdr.py::TestXTCReader::test_get_Writer PASSED [ 17%] 462s testsuite/MDAnalysisTests/coordinates/test_xdr.py::TestXTCReader::test_Writer PASSED [ 17%] 462s testsuite/MDAnalysisTests/coordinates/test_xdr.py::TestXTCReader::test_EOFraisesStopIteration PASSED [ 17%] 462s testsuite/MDAnalysisTests/coordinates/test_xdr.py::TestXTCReader::test_read_next_timestep_ts_no_positions PASSED [ 17%] 462s testsuite/MDAnalysisTests/coordinates/test_xdr.py::TestXTCReaderClass::test_with_statement PASSED [ 17%] 462s testsuite/MDAnalysisTests/coordinates/test_xdr.py::TestTRRReader::test_rewind_xdrtrj PASSED [ 17%] 462s testsuite/MDAnalysisTests/coordinates/test_xdr.py::TestTRRReader::test_next_xdrtrj PASSED [ 17%] 462s testsuite/MDAnalysisTests/coordinates/test_xdr.py::TestTRRReader::test_jump_xdrtrj PASSED [ 17%] 462s testsuite/MDAnalysisTests/coordinates/test_xdr.py::TestTRRReader::test_jump_lastframe_xdrtrj PASSED [ 17%] 462s testsuite/MDAnalysisTests/coordinates/test_xdr.py::TestTRRReader::test_slice_xdrtrj PASSED [ 17%] 462s testsuite/MDAnalysisTests/coordinates/test_xdr.py::TestTRRReader::test_reverse_xdrtrj PASSED [ 17%] 462s testsuite/MDAnalysisTests/coordinates/test_xdr.py::TestTRRReader::test_coordinates PASSED [ 17%] 462s testsuite/MDAnalysisTests/coordinates/test_xdr.py::TestTRRReader::test_unitcell PASSED [ 17%] 462s testsuite/MDAnalysisTests/coordinates/test_xdr.py::TestTRRReader::test_volume PASSED [ 17%] 462s testsuite/MDAnalysisTests/coordinates/test_xdr.py::TestTRRReader::test_totaltime PASSED [ 17%] 462s testsuite/MDAnalysisTests/coordinates/test_xdr.py::TestTRRReader::test_frame PASSED [ 17%] 462s testsuite/MDAnalysisTests/coordinates/test_xdr.py::TestTRRReader::test_get_Writer PASSED [ 17%] 463s testsuite/MDAnalysisTests/coordinates/test_xdr.py::TestTRRReader::test_Writer PASSED [ 17%] 463s testsuite/MDAnalysisTests/coordinates/test_xdr.py::TestTRRReader::test_EOFraisesStopIteration PASSED [ 17%] 463s testsuite/MDAnalysisTests/coordinates/test_xdr.py::TestTRRReader::test_read_next_timestep_ts_no_positions PASSED [ 17%] 463s testsuite/MDAnalysisTests/coordinates/test_xdr.py::TestTRRReader::test_velocities PASSED [ 17%] 463s testsuite/MDAnalysisTests/coordinates/test_xdr.py::TestXTCNoConversion::test_coordinates PASSED [ 17%] 464s testsuite/MDAnalysisTests/coordinates/test_xdr.py::TestTRRNoConversion::test_coordinates PASSED [ 17%] 464s testsuite/MDAnalysisTests/coordinates/test_xdr.py::TestXTCWriter::test_write_trajectory PASSED [ 17%] 465s testsuite/MDAnalysisTests/coordinates/test_xdr.py::TestTRRWriter::test_write_trajectory PASSED [ 17%] 466s testsuite/MDAnalysisTests/coordinates/test_xdr.py::TestTRRWriter::test_velocities PASSED [ 17%] 466s testsuite/MDAnalysisTests/coordinates/test_xdr.py::TestTRRWriter::test_gaps PASSED [ 17%] 466s testsuite/MDAnalysisTests/coordinates/test_xdr.py::TestTRRWriter::test_data_preservation PASSED [ 17%] 467s testsuite/MDAnalysisTests/coordinates/test_xdr.py::TestXTCWriterSingleFrame::test_single_frame_GRO PASSED [ 17%] 468s testsuite/MDAnalysisTests/coordinates/test_xdr.py::TestXTCWriterSingleFrame::test_single_frame_PDB PASSED [ 17%] 468s testsuite/MDAnalysisTests/coordinates/test_xdr.py::TestXTCWriterSingleFrame::test_single_frame_CRD PASSED [ 17%] 468s testsuite/MDAnalysisTests/coordinates/test_xdr.py::TestTRRWriterSingleFrame::test_single_frame_GRO PASSED [ 17%] 470s testsuite/MDAnalysisTests/coordinates/test_xdr.py::TestTRRWriterSingleFrame::test_single_frame_PDB PASSED [ 17%] 470s testsuite/MDAnalysisTests/coordinates/test_xdr.py::TestTRRWriterSingleFrame::test_single_frame_CRD PASSED [ 17%] 470s testsuite/MDAnalysisTests/coordinates/test_xdr.py::TestXTCWriterIssue117::test_write_trajectory PASSED [ 17%] 470s testsuite/MDAnalysisTests/coordinates/test_xdr.py::TestTRRWriterIssue117::test_write_trajectory PASSED [ 17%] 470s testsuite/MDAnalysisTests/coordinates/test_xdr.py::test_triclinic_box PASSED [ 17%] 470s testsuite/MDAnalysisTests/coordinates/test_xdr.py::TestXTCReader_2::test_n_atoms PASSED [ 17%] 470s testsuite/MDAnalysisTests/coordinates/test_xdr.py::TestXTCReader_2::test_n_frames PASSED [ 17%] 470s testsuite/MDAnalysisTests/coordinates/test_xdr.py::TestXTCReader_2::test_first_frame PASSED [ 17%] 470s testsuite/MDAnalysisTests/coordinates/test_xdr.py::TestXTCReader_2::test_double_close PASSED [ 17%] 470s testsuite/MDAnalysisTests/coordinates/test_xdr.py::TestXTCReader_2::test_get_writer_1 PASSED [ 17%] 470s testsuite/MDAnalysisTests/coordinates/test_xdr.py::TestXTCReader_2::test_get_writer_2 PASSED [ 17%] 470s testsuite/MDAnalysisTests/coordinates/test_xdr.py::TestXTCReader_2::test_ts_dt_matches_reader PASSED [ 17%] 470s testsuite/MDAnalysisTests/coordinates/test_xdr.py::TestXTCReader_2::test_first_dimensions PASSED [ 17%] 470s testsuite/MDAnalysisTests/coordinates/test_xdr.py::TestXTCReader_2::test_changing_dimensions PASSED [ 17%] 470s testsuite/MDAnalysisTests/coordinates/test_xdr.py::TestXTCReader_2::test_volume PASSED [ 17%] 470s testsuite/MDAnalysisTests/coordinates/test_xdr.py::TestXTCReader_2::test_add_same_auxname_raises_ValueError PASSED [ 17%] 470s testsuite/MDAnalysisTests/coordinates/test_xdr.py::TestXTCReader_2::test_remove_auxiliary PASSED [ 17%] 470s testsuite/MDAnalysisTests/coordinates/test_xdr.py::TestXTCReader_2::test_remove_nonexistant_auxiliary_raises_ValueError PASSED [ 17%] 470s testsuite/MDAnalysisTests/coordinates/test_xdr.py::TestXTCReader_2::test_get_aux_attribute PASSED [ 17%] 470s testsuite/MDAnalysisTests/coordinates/test_xdr.py::TestXTCReader_2::test_reload_auxiliaries_from_description PASSED [ 17%] 470s testsuite/MDAnalysisTests/coordinates/test_xdr.py::TestXTCReader_2::test_stop_iter PASSED [ 17%] 470s testsuite/MDAnalysisTests/coordinates/test_xdr.py::TestXTCReader_2::test_transformations_iter PASSED [ 17%] 470s testsuite/MDAnalysisTests/coordinates/test_xdr.py::TestXTCReader_2::test_transformations_2iter PASSED [ 17%] 470s testsuite/MDAnalysisTests/coordinates/test_xdr.py::TestXTCReader_2::test_transformations_slice PASSED [ 17%] 470s testsuite/MDAnalysisTests/coordinates/test_xdr.py::TestXTCReader_2::test_transformations_switch_frame PASSED [ 17%] 470s testsuite/MDAnalysisTests/coordinates/test_xdr.py::TestXTCReader_2::test_transformation_rewind PASSED [ 17%] 470s testsuite/MDAnalysisTests/coordinates/test_xdr.py::TestXTCReader_2::test_transformations_copy PASSED [ 17%] 470s testsuite/MDAnalysisTests/coordinates/test_xdr.py::TestXTCReader_2::test_add_another_transformations_raises_ValueError PASSED [ 17%] 470s testsuite/MDAnalysisTests/coordinates/test_xdr.py::TestXTCReader_2::test_pickle_reader PASSED [ 17%] 470s testsuite/MDAnalysisTests/coordinates/test_xdr.py::TestXTCReader_2::test_frame_collect_all_same PASSED [ 17%] 470s testsuite/MDAnalysisTests/coordinates/test_xdr.py::TestXTCReader_2::test_go_over_last_frame PASSED [ 17%] 470s testsuite/MDAnalysisTests/coordinates/test_xdr.py::TestXTCReader_2::test_reopen PASSED [ 17%] 470s testsuite/MDAnalysisTests/coordinates/test_xdr.py::TestXTCReader_2::test_pickle_next_ts_reader PASSED [ 17%] 470s testsuite/MDAnalysisTests/coordinates/test_xdr.py::TestXTCReader_2::test_pickle_last_ts_reader PASSED [ 17%] 470s testsuite/MDAnalysisTests/coordinates/test_xdr.py::TestXTCWriter_2::test_write_different_box PASSED [ 17%] 470s testsuite/MDAnalysisTests/coordinates/test_xdr.py::TestXTCWriter_2::test_write_selection PASSED [ 17%] 470s testsuite/MDAnalysisTests/coordinates/test_xdr.py::TestXTCWriter_2::test_write_none PASSED [ 17%] 470s testsuite/MDAnalysisTests/coordinates/test_xdr.py::TestXTCWriter_2::test_no_container PASSED [ 17%] 470s testsuite/MDAnalysisTests/coordinates/test_xdr.py::TestXTCWriter_2::test_write_not_changing_ts PASSED [ 17%] 470s testsuite/MDAnalysisTests/coordinates/test_xdr.py::TestXTCWriter_2::test_different_precision PASSED [ 17%] 470s testsuite/MDAnalysisTests/coordinates/test_xdr.py::TestTRRReader_2::test_n_atoms PASSED [ 17%] 470s testsuite/MDAnalysisTests/coordinates/test_xdr.py::TestTRRReader_2::test_n_frames PASSED [ 17%] 470s testsuite/MDAnalysisTests/coordinates/test_xdr.py::TestTRRReader_2::test_first_frame PASSED [ 17%] 470s testsuite/MDAnalysisTests/coordinates/test_xdr.py::TestTRRReader_2::test_double_close PASSED [ 17%] 470s testsuite/MDAnalysisTests/coordinates/test_xdr.py::TestTRRReader_2::test_get_writer_1 PASSED [ 17%] 470s testsuite/MDAnalysisTests/coordinates/test_xdr.py::TestTRRReader_2::test_get_writer_2 PASSED [ 17%] 470s testsuite/MDAnalysisTests/coordinates/test_xdr.py::TestTRRReader_2::test_ts_dt_matches_reader PASSED [ 17%] 470s testsuite/MDAnalysisTests/coordinates/test_xdr.py::TestTRRReader_2::test_first_dimensions PASSED [ 17%] 470s testsuite/MDAnalysisTests/coordinates/test_xdr.py::TestTRRReader_2::test_changing_dimensions PASSED [ 17%] 470s testsuite/MDAnalysisTests/coordinates/test_xdr.py::TestTRRReader_2::test_volume PASSED [ 17%] 470s testsuite/MDAnalysisTests/coordinates/test_xdr.py::TestTRRReader_2::test_add_same_auxname_raises_ValueError PASSED [ 17%] 470s testsuite/MDAnalysisTests/coordinates/test_xdr.py::TestTRRReader_2::test_remove_auxiliary PASSED [ 17%] 470s testsuite/MDAnalysisTests/coordinates/test_xdr.py::TestTRRReader_2::test_remove_nonexistant_auxiliary_raises_ValueError PASSED [ 17%] 470s testsuite/MDAnalysisTests/coordinates/test_xdr.py::TestTRRReader_2::test_get_aux_attribute PASSED [ 17%] 470s testsuite/MDAnalysisTests/coordinates/test_xdr.py::TestTRRReader_2::test_reload_auxiliaries_from_description PASSED [ 17%] 470s testsuite/MDAnalysisTests/coordinates/test_xdr.py::TestTRRReader_2::test_stop_iter PASSED [ 17%] 470s testsuite/MDAnalysisTests/coordinates/test_xdr.py::TestTRRReader_2::test_transformations_iter PASSED [ 17%] 470s testsuite/MDAnalysisTests/coordinates/test_xdr.py::TestTRRReader_2::test_transformations_2iter PASSED [ 17%] 470s testsuite/MDAnalysisTests/coordinates/test_xdr.py::TestTRRReader_2::test_transformations_slice PASSED [ 17%] 470s testsuite/MDAnalysisTests/coordinates/test_xdr.py::TestTRRReader_2::test_transformations_switch_frame PASSED [ 17%] 470s testsuite/MDAnalysisTests/coordinates/test_xdr.py::TestTRRReader_2::test_transformation_rewind PASSED [ 17%] 470s testsuite/MDAnalysisTests/coordinates/test_xdr.py::TestTRRReader_2::test_transformations_copy PASSED [ 17%] 470s testsuite/MDAnalysisTests/coordinates/test_xdr.py::TestTRRReader_2::test_add_another_transformations_raises_ValueError PASSED [ 17%] 470s testsuite/MDAnalysisTests/coordinates/test_xdr.py::TestTRRReader_2::test_pickle_reader PASSED [ 17%] 470s testsuite/MDAnalysisTests/coordinates/test_xdr.py::TestTRRReader_2::test_frame_collect_all_same PASSED [ 17%] 470s testsuite/MDAnalysisTests/coordinates/test_xdr.py::TestTRRReader_2::test_go_over_last_frame PASSED [ 17%] 470s testsuite/MDAnalysisTests/coordinates/test_xdr.py::TestTRRReader_2::test_reopen PASSED [ 17%] 470s testsuite/MDAnalysisTests/coordinates/test_xdr.py::TestTRRReader_2::test_pickle_next_ts_reader PASSED [ 17%] 470s testsuite/MDAnalysisTests/coordinates/test_xdr.py::TestTRRReader_2::test_pickle_last_ts_reader PASSED [ 17%] 470s testsuite/MDAnalysisTests/coordinates/test_xdr.py::TestTRRWriter_2::test_write_different_box PASSED [ 17%] 470s testsuite/MDAnalysisTests/coordinates/test_xdr.py::TestTRRWriter_2::test_write_selection PASSED [ 17%] 470s testsuite/MDAnalysisTests/coordinates/test_xdr.py::TestTRRWriter_2::test_write_none PASSED [ 17%] 470s testsuite/MDAnalysisTests/coordinates/test_xdr.py::TestTRRWriter_2::test_no_container PASSED [ 17%] 470s testsuite/MDAnalysisTests/coordinates/test_xdr.py::TestTRRWriter_2::test_write_not_changing_ts PASSED [ 17%] 470s testsuite/MDAnalysisTests/coordinates/test_xdr.py::TestTRRWriter_2::test_lambda PASSED [ 17%] 470s testsuite/MDAnalysisTests/coordinates/test_xdr.py::TestXTCReader_offsets::test_offsets PASSED [ 17%] 470s testsuite/MDAnalysisTests/coordinates/test_xdr.py::TestXTCReader_offsets::test_reload_offsets PASSED [ 17%] 470s testsuite/MDAnalysisTests/coordinates/test_xdr.py::TestXTCReader_offsets::test_nonexistent_offsets_file PASSED [ 17%] 470s testsuite/MDAnalysisTests/coordinates/test_xdr.py::TestXTCReader_offsets::test_corrupted_offsets_file PASSED [ 17%] 470s testsuite/MDAnalysisTests/coordinates/test_xdr.py::TestXTCReader_offsets::test_reload_offsets_if_offsets_readin_io_fails PASSED [ 17%] 470s testsuite/MDAnalysisTests/coordinates/test_xdr.py::TestXTCReader_offsets::test_reload_offsets_if_offsets_readin_value_fails PASSED [ 17%] 470s testsuite/MDAnalysisTests/coordinates/test_xdr.py::TestXTCReader_offsets::test_persistent_offsets_size_mismatch PASSED [ 17%] 470s testsuite/MDAnalysisTests/coordinates/test_xdr.py::TestXTCReader_offsets::test_persistent_offsets_ctime_mismatch PASSED [ 17%] 470s testsuite/MDAnalysisTests/coordinates/test_xdr.py::TestXTCReader_offsets::test_persistent_offsets_natoms_mismatch PASSED [ 17%] 470s testsuite/MDAnalysisTests/coordinates/test_xdr.py::TestXTCReader_offsets::test_persistent_offsets_last_frame_wrong PASSED [ 17%] 470s testsuite/MDAnalysisTests/coordinates/test_xdr.py::TestXTCReader_offsets::test_unsupported_format PASSED [ 17%] 470s testsuite/MDAnalysisTests/coordinates/test_xdr.py::TestXTCReader_offsets::test_persistent_offsets_readonly PASSED [ 17%] 470s testsuite/MDAnalysisTests/coordinates/test_xdr.py::TestXTCReader_offsets::test_offset_lock_created PASSED [ 17%] 470s testsuite/MDAnalysisTests/coordinates/test_xdr.py::TestTRRReader_offsets::test_offsets PASSED [ 17%] 470s testsuite/MDAnalysisTests/coordinates/test_xdr.py::TestTRRReader_offsets::test_reload_offsets PASSED [ 17%] 470s testsuite/MDAnalysisTests/coordinates/test_xdr.py::TestTRRReader_offsets::test_nonexistent_offsets_file PASSED [ 17%] 470s testsuite/MDAnalysisTests/coordinates/test_xdr.py::TestTRRReader_offsets::test_corrupted_offsets_file PASSED [ 17%] 470s testsuite/MDAnalysisTests/coordinates/test_xdr.py::TestTRRReader_offsets::test_reload_offsets_if_offsets_readin_io_fails PASSED [ 17%] 470s testsuite/MDAnalysisTests/coordinates/test_xdr.py::TestTRRReader_offsets::test_reload_offsets_if_offsets_readin_value_fails PASSED [ 17%] 470s testsuite/MDAnalysisTests/coordinates/test_xdr.py::TestTRRReader_offsets::test_persistent_offsets_size_mismatch PASSED [ 17%] 470s testsuite/MDAnalysisTests/coordinates/test_xdr.py::TestTRRReader_offsets::test_persistent_offsets_ctime_mismatch PASSED [ 17%] 470s testsuite/MDAnalysisTests/coordinates/test_xdr.py::TestTRRReader_offsets::test_persistent_offsets_natoms_mismatch PASSED [ 17%] 470s testsuite/MDAnalysisTests/coordinates/test_xdr.py::TestTRRReader_offsets::test_persistent_offsets_last_frame_wrong PASSED [ 17%] 470s testsuite/MDAnalysisTests/coordinates/test_xdr.py::TestTRRReader_offsets::test_unsupported_format PASSED [ 17%] 470s testsuite/MDAnalysisTests/coordinates/test_xdr.py::TestTRRReader_offsets::test_persistent_offsets_readonly PASSED [ 17%] 470s testsuite/MDAnalysisTests/coordinates/test_xdr.py::TestTRRReader_offsets::test_offset_lock_created PASSED [ 17%] 470s testsuite/MDAnalysisTests/coordinates/test_xdr.py::test_pathlib PASSED [ 17%] 471s testsuite/MDAnalysisTests/coordinates/test_xyz.py::TestXYZReader::test_n_atoms PASSED [ 17%] 471s testsuite/MDAnalysisTests/coordinates/test_xyz.py::TestXYZReader::test_n_frames PASSED [ 17%] 471s testsuite/MDAnalysisTests/coordinates/test_xyz.py::TestXYZReader::test_first_frame PASSED [ 17%] 471s testsuite/MDAnalysisTests/coordinates/test_xyz.py::TestXYZReader::test_double_close PASSED [ 17%] 471s testsuite/MDAnalysisTests/coordinates/test_xyz.py::TestXYZReader::test_get_writer_1 PASSED [ 17%] 471s testsuite/MDAnalysisTests/coordinates/test_xyz.py::TestXYZReader::test_get_writer_2 PASSED [ 17%] 471s testsuite/MDAnalysisTests/coordinates/test_xyz.py::TestXYZReader::test_ts_dt_matches_reader PASSED [ 17%] 471s testsuite/MDAnalysisTests/coordinates/test_xyz.py::TestXYZReader::test_first_dimensions PASSED [ 17%] 471s testsuite/MDAnalysisTests/coordinates/test_xyz.py::TestXYZReader::test_changing_dimensions PASSED [ 17%] 471s testsuite/MDAnalysisTests/coordinates/test_xyz.py::TestXYZReader::test_volume PASSED [ 17%] 471s testsuite/MDAnalysisTests/coordinates/test_xyz.py::TestXYZReader::test_add_same_auxname_raises_ValueError PASSED [ 17%] 471s testsuite/MDAnalysisTests/coordinates/test_xyz.py::TestXYZReader::test_remove_auxiliary PASSED [ 17%] 471s testsuite/MDAnalysisTests/coordinates/test_xyz.py::TestXYZReader::test_remove_nonexistant_auxiliary_raises_ValueError PASSED [ 17%] 471s testsuite/MDAnalysisTests/coordinates/test_xyz.py::TestXYZReader::test_get_aux_attribute PASSED [ 17%] 471s testsuite/MDAnalysisTests/coordinates/test_xyz.py::TestXYZReader::test_reload_auxiliaries_from_description PASSED [ 17%] 471s testsuite/MDAnalysisTests/coordinates/test_xyz.py::TestXYZReader::test_stop_iter PASSED [ 17%] 471s testsuite/MDAnalysisTests/coordinates/test_xyz.py::TestXYZReader::test_transformations_iter PASSED [ 17%] 471s testsuite/MDAnalysisTests/coordinates/test_xyz.py::TestXYZReader::test_transformations_2iter PASSED [ 17%] 471s testsuite/MDAnalysisTests/coordinates/test_xyz.py::TestXYZReader::test_transformations_slice PASSED [ 17%] 471s testsuite/MDAnalysisTests/coordinates/test_xyz.py::TestXYZReader::test_transformations_switch_frame PASSED [ 17%] 471s testsuite/MDAnalysisTests/coordinates/test_xyz.py::TestXYZReader::test_transformation_rewind PASSED [ 17%] 471s testsuite/MDAnalysisTests/coordinates/test_xyz.py::TestXYZReader::test_transformations_copy PASSED [ 17%] 471s testsuite/MDAnalysisTests/coordinates/test_xyz.py::TestXYZReader::test_add_another_transformations_raises_ValueError PASSED [ 17%] 471s testsuite/MDAnalysisTests/coordinates/test_xyz.py::TestXYZReader::test_pickle_reader PASSED [ 17%] 471s testsuite/MDAnalysisTests/coordinates/test_xyz.py::TestXYZReader::test_frame_collect_all_same PASSED [ 17%] 471s testsuite/MDAnalysisTests/coordinates/test_xyz.py::TestXYZReader::test_go_over_last_frame PASSED [ 17%] 471s testsuite/MDAnalysisTests/coordinates/test_xyz.py::TestXYZReader::test_reopen PASSED [ 17%] 471s testsuite/MDAnalysisTests/coordinates/test_xyz.py::TestXYZReader::test_pickle_next_ts_reader PASSED [ 17%] 471s testsuite/MDAnalysisTests/coordinates/test_xyz.py::TestXYZReader::test_pickle_last_ts_reader PASSED [ 17%] 471s testsuite/MDAnalysisTests/coordinates/test_xyz.py::TestXYZReader::test_double_open PASSED [ 17%] 471s testsuite/MDAnalysisTests/coordinates/test_xyz.py::TestXYZWriter::test_write_different_box PASSED [ 17%] 471s testsuite/MDAnalysisTests/coordinates/test_xyz.py::TestXYZWriter::test_write_none PASSED [ 17%] 471s testsuite/MDAnalysisTests/coordinates/test_xyz.py::TestXYZWriter::test_no_container PASSED [ 17%] 471s testsuite/MDAnalysisTests/coordinates/test_xyz.py::TestXYZWriter::test_write_not_changing_ts PASSED [ 17%] 471s testsuite/MDAnalysisTests/coordinates/test_xyz.py::TestXYZWriter::test_write_selection PASSED [ 17%] 471s testsuite/MDAnalysisTests/coordinates/test_xyz.py::TestXYZWriter::test_write_different_models_in_trajectory PASSED [ 17%] 471s testsuite/MDAnalysisTests/coordinates/test_xyz.py::TestXYZWriter::test_no_conversion PASSED [ 17%] 471s testsuite/MDAnalysisTests/coordinates/test_xyz.py::TestXYZWriter::test_remark[Curstom Remark-Curstom Remark] PASSED [ 17%] 471s testsuite/MDAnalysisTests/coordinates/test_xyz.py::TestXYZWriter::test_remark[-] PASSED [ 17%] 471s testsuite/MDAnalysisTests/coordinates/test_xyz.py::TestXYZWriter::test_remark[None-frame 0 | Written by MDAnalysis XYZWriter (release 2.7.0)] PASSED [ 17%] 471s testsuite/MDAnalysisTests/coordinates/test_xyz.py::Test_XYZBZReader::test_n_atoms PASSED [ 17%] 471s testsuite/MDAnalysisTests/coordinates/test_xyz.py::Test_XYZBZReader::test_n_frames PASSED [ 17%] 471s testsuite/MDAnalysisTests/coordinates/test_xyz.py::Test_XYZBZReader::test_first_frame PASSED [ 17%] 471s testsuite/MDAnalysisTests/coordinates/test_xyz.py::Test_XYZBZReader::test_double_close PASSED [ 17%] 471s testsuite/MDAnalysisTests/coordinates/test_xyz.py::Test_XYZBZReader::test_get_writer_1 PASSED [ 17%] 471s testsuite/MDAnalysisTests/coordinates/test_xyz.py::Test_XYZBZReader::test_get_writer_2 PASSED [ 17%] 471s testsuite/MDAnalysisTests/coordinates/test_xyz.py::Test_XYZBZReader::test_ts_dt_matches_reader PASSED [ 17%] 471s testsuite/MDAnalysisTests/coordinates/test_xyz.py::Test_XYZBZReader::test_first_dimensions PASSED [ 18%] 471s testsuite/MDAnalysisTests/coordinates/test_xyz.py::Test_XYZBZReader::test_changing_dimensions PASSED [ 18%] 471s testsuite/MDAnalysisTests/coordinates/test_xyz.py::Test_XYZBZReader::test_volume PASSED [ 18%] 471s testsuite/MDAnalysisTests/coordinates/test_xyz.py::Test_XYZBZReader::test_add_same_auxname_raises_ValueError PASSED [ 18%] 471s testsuite/MDAnalysisTests/coordinates/test_xyz.py::Test_XYZBZReader::test_remove_auxiliary PASSED [ 18%] 471s testsuite/MDAnalysisTests/coordinates/test_xyz.py::Test_XYZBZReader::test_remove_nonexistant_auxiliary_raises_ValueError PASSED [ 18%] 471s testsuite/MDAnalysisTests/coordinates/test_xyz.py::Test_XYZBZReader::test_get_aux_attribute PASSED [ 18%] 471s testsuite/MDAnalysisTests/coordinates/test_xyz.py::Test_XYZBZReader::test_reload_auxiliaries_from_description PASSED [ 18%] 471s testsuite/MDAnalysisTests/coordinates/test_xyz.py::Test_XYZBZReader::test_stop_iter PASSED [ 18%] 471s testsuite/MDAnalysisTests/coordinates/test_xyz.py::Test_XYZBZReader::test_transformations_iter PASSED [ 18%] 471s testsuite/MDAnalysisTests/coordinates/test_xyz.py::Test_XYZBZReader::test_transformations_2iter PASSED [ 18%] 471s testsuite/MDAnalysisTests/coordinates/test_xyz.py::Test_XYZBZReader::test_transformations_slice PASSED [ 18%] 471s testsuite/MDAnalysisTests/coordinates/test_xyz.py::Test_XYZBZReader::test_transformations_switch_frame PASSED [ 18%] 471s testsuite/MDAnalysisTests/coordinates/test_xyz.py::Test_XYZBZReader::test_transformation_rewind PASSED [ 18%] 471s testsuite/MDAnalysisTests/coordinates/test_xyz.py::Test_XYZBZReader::test_transformations_copy PASSED [ 18%] 471s testsuite/MDAnalysisTests/coordinates/test_xyz.py::Test_XYZBZReader::test_add_another_transformations_raises_ValueError PASSED [ 18%] 471s testsuite/MDAnalysisTests/coordinates/test_xyz.py::Test_XYZBZReader::test_pickle_reader PASSED [ 18%] 471s testsuite/MDAnalysisTests/coordinates/test_xyz.py::Test_XYZBZReader::test_frame_collect_all_same PASSED [ 18%] 471s testsuite/MDAnalysisTests/coordinates/test_xyz.py::Test_XYZBZReader::test_go_over_last_frame PASSED [ 18%] 471s testsuite/MDAnalysisTests/coordinates/test_xyz.py::Test_XYZBZReader::test_reopen PASSED [ 18%] 471s testsuite/MDAnalysisTests/coordinates/test_xyz.py::Test_XYZBZReader::test_pickle_next_ts_reader PASSED [ 18%] 471s testsuite/MDAnalysisTests/coordinates/test_xyz.py::Test_XYZBZReader::test_pickle_last_ts_reader PASSED [ 18%] 471s testsuite/MDAnalysisTests/coordinates/test_xyz.py::Test_XYZBZReader::test_double_open PASSED [ 18%] 471s testsuite/MDAnalysisTests/coordinates/test_xyz.py::Test_XYZBZWriter::test_write_different_box PASSED [ 18%] 471s testsuite/MDAnalysisTests/coordinates/test_xyz.py::Test_XYZBZWriter::test_write_none PASSED [ 18%] 471s testsuite/MDAnalysisTests/coordinates/test_xyz.py::Test_XYZBZWriter::test_no_container PASSED [ 18%] 471s testsuite/MDAnalysisTests/coordinates/test_xyz.py::Test_XYZBZWriter::test_write_not_changing_ts PASSED [ 18%] 471s testsuite/MDAnalysisTests/coordinates/test_xyz.py::Test_XYZBZWriter::test_write_selection PASSED [ 18%] 471s testsuite/MDAnalysisTests/coordinates/test_xyz.py::Test_XYZBZWriter::test_write_different_models_in_trajectory PASSED [ 18%] 471s testsuite/MDAnalysisTests/coordinates/test_xyz.py::Test_XYZBZWriter::test_no_conversion PASSED [ 18%] 471s testsuite/MDAnalysisTests/coordinates/test_xyz.py::Test_XYZBZWriter::test_remark[Curstom Remark-Curstom Remark] PASSED [ 18%] 471s testsuite/MDAnalysisTests/coordinates/test_xyz.py::Test_XYZBZWriter::test_remark[-] PASSED [ 18%] 471s testsuite/MDAnalysisTests/coordinates/test_xyz.py::Test_XYZBZWriter::test_remark[None-frame 0 | Written by MDAnalysis XYZWriter (release 2.7.0)] PASSED [ 18%] 471s testsuite/MDAnalysisTests/coordinates/test_xyz.py::TestXYZWriterNames::test_no_names PASSED [ 18%] 471s testsuite/MDAnalysisTests/coordinates/test_xyz.py::TestXYZWriterNames::test_elements_or_names[elements] PASSED [ 18%] 471s testsuite/MDAnalysisTests/coordinates/test_xyz.py::TestXYZWriterNames::test_elements_or_names[names] PASSED [ 18%] 471s testsuite/MDAnalysisTests/coordinates/test_xyz.py::TestXYZWriterNames::test_elements_and_names PASSED [ 18%] 471s testsuite/MDAnalysisTests/core/test_accessors.py::TestConvertTo::test_convert_to_case_insensitive SKIPPED [ 18%] 471s testsuite/MDAnalysisTests/core/test_accessors.py::TestConvertTo::test_convert_to_lib_as_method SKIPPED [ 18%] 471s testsuite/MDAnalysisTests/core/test_accessors.py::TestConvertTo::test_convert_to_kwargs SKIPPED [ 18%] 471s testsuite/MDAnalysisTests/core/test_accessors.py::TestConvertTo::test_convert_to_lib_method_kwargs SKIPPED [ 18%] 471s testsuite/MDAnalysisTests/core/test_accessors.py::TestAccessor::test_access_from_class PASSED [ 18%] 471s testsuite/MDAnalysisTests/core/test_accessors.py::TestConverterWrapper::test_raises_valueerror PASSED [ 18%] 471s testsuite/MDAnalysisTests/core/test_accessors.py::TestConverterWrapper::test_single_instance SKIPPED [ 18%] 471s testsuite/MDAnalysisTests/core/test_accumulate.py::TestAccumulate::test_accumulate_str_attribute[atoms] PASSED [ 18%] 471s testsuite/MDAnalysisTests/core/test_accumulate.py::TestAccumulate::test_accumulate_str_attribute[residues] PASSED [ 18%] 471s testsuite/MDAnalysisTests/core/test_accumulate.py::TestAccumulate::test_accumulate_str_attribute[segments] PASSED [ 18%] 471s testsuite/MDAnalysisTests/core/test_accumulate.py::TestAccumulate::test_accumulate_different_func[atoms] PASSED [ 18%] 471s testsuite/MDAnalysisTests/core/test_accumulate.py::TestAccumulate::test_accumulate_different_func[residues] PASSED [ 18%] 471s testsuite/MDAnalysisTests/core/test_accumulate.py::TestAccumulate::test_accumulate_different_func[segments] PASSED [ 18%] 471s testsuite/MDAnalysisTests/core/test_accumulate.py::TestAccumulate::test_accumulate_str_attribute_compounds[atoms-resindices-residues] PASSED [ 18%] 471s testsuite/MDAnalysisTests/core/test_accumulate.py::TestAccumulate::test_accumulate_str_attribute_compounds[atoms-segindices-segments] PASSED [ 18%] 471s testsuite/MDAnalysisTests/core/test_accumulate.py::TestAccumulate::test_accumulate_str_attribute_compounds[atoms-molnums-molecules] PASSED [ 18%] 471s testsuite/MDAnalysisTests/core/test_accumulate.py::TestAccumulate::test_accumulate_str_attribute_compounds[atoms-fragindices-fragments] PASSED [ 18%] 471s testsuite/MDAnalysisTests/core/test_accumulate.py::TestAccumulate::test_accumulate_str_attribute_compounds[residues-resindices-residues] PASSED [ 18%] 471s testsuite/MDAnalysisTests/core/test_accumulate.py::TestAccumulate::test_accumulate_str_attribute_compounds[residues-segindices-segments] PASSED [ 18%] 471s testsuite/MDAnalysisTests/core/test_accumulate.py::TestAccumulate::test_accumulate_str_attribute_compounds[residues-molnums-molecules] PASSED [ 18%] 471s testsuite/MDAnalysisTests/core/test_accumulate.py::TestAccumulate::test_accumulate_str_attribute_compounds[residues-fragindices-fragments] PASSED [ 18%] 471s testsuite/MDAnalysisTests/core/test_accumulate.py::TestAccumulate::test_accumulate_str_attribute_compounds[segments-resindices-residues] PASSED [ 18%] 471s testsuite/MDAnalysisTests/core/test_accumulate.py::TestAccumulate::test_accumulate_str_attribute_compounds[segments-segindices-segments] PASSED [ 18%] 471s testsuite/MDAnalysisTests/core/test_accumulate.py::TestAccumulate::test_accumulate_str_attribute_compounds[segments-molnums-molecules] PASSED [ 18%] 471s testsuite/MDAnalysisTests/core/test_accumulate.py::TestAccumulate::test_accumulate_str_attribute_compounds[segments-fragindices-fragments] PASSED [ 18%] 471s testsuite/MDAnalysisTests/core/test_accumulate.py::TestAccumulate::test_accumulate_wrongname[atoms] PASSED [ 18%] 471s testsuite/MDAnalysisTests/core/test_accumulate.py::TestAccumulate::test_accumulate_wrongname[residues] PASSED [ 18%] 472s testsuite/MDAnalysisTests/core/test_accumulate.py::TestAccumulate::test_accumulate_wrongname[segments] PASSED [ 18%] 472s testsuite/MDAnalysisTests/core/test_accumulate.py::TestAccumulate::test_accumulate_wrongcomponent[atoms] PASSED [ 18%] 472s testsuite/MDAnalysisTests/core/test_accumulate.py::TestAccumulate::test_accumulate_wrongcomponent[residues] PASSED [ 18%] 472s testsuite/MDAnalysisTests/core/test_accumulate.py::TestAccumulate::test_accumulate_wrongcomponent[segments] PASSED [ 18%] 472s testsuite/MDAnalysisTests/core/test_accumulate.py::TestAccumulate::test_accumulate_nobonds[atoms] PASSED [ 18%] 472s testsuite/MDAnalysisTests/core/test_accumulate.py::TestAccumulate::test_accumulate_nobonds[residues] PASSED [ 18%] 473s testsuite/MDAnalysisTests/core/test_accumulate.py::TestAccumulate::test_accumulate_nobonds[segments] PASSED [ 18%] 473s testsuite/MDAnalysisTests/core/test_accumulate.py::TestAccumulate::test_accumulate_nomolnums[atoms] PASSED [ 18%] 473s testsuite/MDAnalysisTests/core/test_accumulate.py::TestAccumulate::test_accumulate_nomolnums[residues] PASSED [ 18%] 474s testsuite/MDAnalysisTests/core/test_accumulate.py::TestAccumulate::test_accumulate_nomolnums[segments] PASSED [ 18%] 474s testsuite/MDAnalysisTests/core/test_accumulate.py::TestAccumulate::test_accumulate_array_attribute[atoms] PASSED [ 18%] 474s testsuite/MDAnalysisTests/core/test_accumulate.py::TestAccumulate::test_accumulate_array_attribute[residues] PASSED [ 18%] 474s testsuite/MDAnalysisTests/core/test_accumulate.py::TestAccumulate::test_accumulate_array_attribute[segments] PASSED [ 18%] 474s testsuite/MDAnalysisTests/core/test_accumulate.py::TestAccumulate::test_accumulate_array_attribute_wrongshape[atoms] PASSED [ 18%] 474s testsuite/MDAnalysisTests/core/test_accumulate.py::TestAccumulate::test_accumulate_array_attribute_wrongshape[residues] PASSED [ 18%] 474s testsuite/MDAnalysisTests/core/test_accumulate.py::TestAccumulate::test_accumulate_array_attribute_wrongshape[segments] PASSED [ 18%] 474s testsuite/MDAnalysisTests/core/test_accumulate.py::TestAccumulate::test_accumulate_array_attribute_compounds[atoms-resindices-residues] PASSED [ 18%] 474s testsuite/MDAnalysisTests/core/test_accumulate.py::TestAccumulate::test_accumulate_array_attribute_compounds[atoms-segindices-segments] PASSED [ 18%] 474s testsuite/MDAnalysisTests/core/test_accumulate.py::TestAccumulate::test_accumulate_array_attribute_compounds[atoms-molnums-molecules] PASSED [ 18%] 474s testsuite/MDAnalysisTests/core/test_accumulate.py::TestAccumulate::test_accumulate_array_attribute_compounds[atoms-fragindices-fragments] PASSED [ 18%] 474s testsuite/MDAnalysisTests/core/test_accumulate.py::TestAccumulate::test_accumulate_array_attribute_compounds[residues-resindices-residues] PASSED [ 18%] 474s testsuite/MDAnalysisTests/core/test_accumulate.py::TestAccumulate::test_accumulate_array_attribute_compounds[residues-segindices-segments] PASSED [ 18%] 474s testsuite/MDAnalysisTests/core/test_accumulate.py::TestAccumulate::test_accumulate_array_attribute_compounds[residues-molnums-molecules] PASSED [ 18%] 474s testsuite/MDAnalysisTests/core/test_accumulate.py::TestAccumulate::test_accumulate_array_attribute_compounds[residues-fragindices-fragments] PASSED [ 18%] 474s testsuite/MDAnalysisTests/core/test_accumulate.py::TestAccumulate::test_accumulate_array_attribute_compounds[segments-resindices-residues] PASSED [ 18%] 474s testsuite/MDAnalysisTests/core/test_accumulate.py::TestAccumulate::test_accumulate_array_attribute_compounds[segments-segindices-segments] PASSED [ 18%] 474s testsuite/MDAnalysisTests/core/test_accumulate.py::TestAccumulate::test_accumulate_array_attribute_compounds[segments-molnums-molecules] PASSED [ 18%] 474s testsuite/MDAnalysisTests/core/test_accumulate.py::TestAccumulate::test_accumulate_array_attribute_compounds[segments-fragindices-fragments] PASSED [ 18%] 474s testsuite/MDAnalysisTests/core/test_accumulate.py::TestTotals::test_total_charge[atoms] PASSED [ 18%] 474s testsuite/MDAnalysisTests/core/test_accumulate.py::TestTotals::test_total_charge[residues] PASSED [ 18%] 474s testsuite/MDAnalysisTests/core/test_accumulate.py::TestTotals::test_total_charge[segments] PASSED [ 18%] 474s testsuite/MDAnalysisTests/core/test_accumulate.py::TestTotals::test_total_charge_compounds[atoms-resids-residues] PASSED [ 18%] 475s testsuite/MDAnalysisTests/core/test_accumulate.py::TestTotals::test_total_charge_compounds[atoms-segids-segments] PASSED [ 18%] 475s testsuite/MDAnalysisTests/core/test_accumulate.py::TestTotals::test_total_charge_compounds[atoms-fragindices-fragments] PASSED [ 18%] 475s testsuite/MDAnalysisTests/core/test_accumulate.py::TestTotals::test_total_charge_compounds[residues-resids-residues] PASSED [ 18%] 475s testsuite/MDAnalysisTests/core/test_accumulate.py::TestTotals::test_total_charge_compounds[residues-segids-segments] PASSED [ 18%] 475s testsuite/MDAnalysisTests/core/test_accumulate.py::TestTotals::test_total_charge_compounds[residues-fragindices-fragments] PASSED [ 18%] 475s testsuite/MDAnalysisTests/core/test_accumulate.py::TestTotals::test_total_charge_compounds[segments-resids-residues] PASSED [ 18%] 475s testsuite/MDAnalysisTests/core/test_accumulate.py::TestTotals::test_total_charge_compounds[segments-segids-segments] PASSED [ 18%] 475s testsuite/MDAnalysisTests/core/test_accumulate.py::TestTotals::test_total_charge_compounds[segments-fragindices-fragments] PASSED [ 18%] 475s testsuite/MDAnalysisTests/core/test_accumulate.py::TestTotals::test_total_charge_duplicates[atoms] PASSED [ 18%] 475s testsuite/MDAnalysisTests/core/test_accumulate.py::TestTotals::test_total_charge_duplicates[residues] PASSED [ 18%] 475s testsuite/MDAnalysisTests/core/test_accumulate.py::TestTotals::test_total_charge_duplicates[segments] PASSED [ 18%] 475s testsuite/MDAnalysisTests/core/test_accumulate.py::TestTotals::test_total_mass[atoms] PASSED [ 18%] 476s testsuite/MDAnalysisTests/core/test_accumulate.py::TestTotals::test_total_mass[residues] PASSED [ 18%] 476s testsuite/MDAnalysisTests/core/test_accumulate.py::TestTotals::test_total_mass[segments] PASSED [ 18%] 476s testsuite/MDAnalysisTests/core/test_accumulate.py::TestTotals::test_total_mass_compounds[atoms-resids-residues] PASSED [ 18%] 476s testsuite/MDAnalysisTests/core/test_accumulate.py::TestTotals::test_total_mass_compounds[atoms-segids-segments] PASSED [ 18%] 476s testsuite/MDAnalysisTests/core/test_accumulate.py::TestTotals::test_total_mass_compounds[atoms-fragindices-fragments] PASSED [ 18%] 476s testsuite/MDAnalysisTests/core/test_accumulate.py::TestTotals::test_total_mass_compounds[residues-resids-residues] PASSED [ 18%] 476s testsuite/MDAnalysisTests/core/test_accumulate.py::TestTotals::test_total_mass_compounds[residues-segids-segments] PASSED [ 18%] 476s testsuite/MDAnalysisTests/core/test_accumulate.py::TestTotals::test_total_mass_compounds[residues-fragindices-fragments] PASSED [ 18%] 476s testsuite/MDAnalysisTests/core/test_accumulate.py::TestTotals::test_total_mass_compounds[segments-resids-residues] PASSED [ 18%] 476s testsuite/MDAnalysisTests/core/test_accumulate.py::TestTotals::test_total_mass_compounds[segments-segids-segments] PASSED [ 18%] 476s testsuite/MDAnalysisTests/core/test_accumulate.py::TestTotals::test_total_mass_compounds[segments-fragindices-fragments] PASSED [ 18%] 476s testsuite/MDAnalysisTests/core/test_accumulate.py::TestTotals::test_total_mass_duplicates[atoms] PASSED [ 18%] 476s testsuite/MDAnalysisTests/core/test_accumulate.py::TestTotals::test_total_mass_duplicates[residues] PASSED [ 18%] 476s testsuite/MDAnalysisTests/core/test_accumulate.py::TestTotals::test_total_mass_duplicates[segments] PASSED [ 18%] 476s testsuite/MDAnalysisTests/core/test_accumulate.py::TestMultipole::test_dipole_moment_com PASSED [ 18%] 476s testsuite/MDAnalysisTests/core/test_accumulate.py::TestMultipole::test_dipole_moment_no_center PASSED [ 18%] 476s testsuite/MDAnalysisTests/core/test_accumulate.py::TestMultipole::test_dipole_moment_residues_com_coc PASSED [ 18%] 476s testsuite/MDAnalysisTests/core/test_accumulate.py::TestMultipole::test_dipole_moment_segment PASSED [ 18%] 476s testsuite/MDAnalysisTests/core/test_accumulate.py::TestMultipole::test_dipole_moment_fragments PASSED [ 18%] 477s testsuite/MDAnalysisTests/core/test_accumulate.py::TestMultipole::test_quadrupole_moment_com PASSED [ 18%] 477s testsuite/MDAnalysisTests/core/test_accumulate.py::TestMultipole::test_quadrupole_moment_coc PASSED [ 18%] 477s testsuite/MDAnalysisTests/core/test_accumulate.py::TestMultipole::test_quadrupole_moment_no_center PASSED [ 18%] 477s testsuite/MDAnalysisTests/core/test_accumulate.py::TestMultipole::test_quadrupole_moment_residues PASSED [ 18%] 477s testsuite/MDAnalysisTests/core/test_accumulate.py::TestMultipole::test_quadrupole_moment_segment PASSED [ 18%] 477s testsuite/MDAnalysisTests/core/test_accumulate.py::TestMultipole::test_quadrupole_moment_fragments PASSED [ 18%] 477s testsuite/MDAnalysisTests/core/test_atom.py::TestAtom::test_attributes_names PASSED [ 18%] 477s testsuite/MDAnalysisTests/core/test_atom.py::TestAtom::test_setting_attribute_name PASSED [ 18%] 477s testsuite/MDAnalysisTests/core/test_atom.py::TestAtom::test_setting_attribute_type PASSED [ 18%] 477s testsuite/MDAnalysisTests/core/test_atom.py::TestAtom::test_setting_attribute_mass PASSED [ 18%] 477s testsuite/MDAnalysisTests/core/test_atom.py::TestAtom::test_setting_attributes_charge PASSED [ 18%] 477s testsuite/MDAnalysisTests/core/test_atom.py::TestAtom::test_attributes_positions PASSED [ 18%] 477s testsuite/MDAnalysisTests/core/test_atom.py::TestAtom::test_atom_selection PASSED [ 18%] 477s testsuite/MDAnalysisTests/core/test_atom.py::TestAtom::test_hierarchy PASSED [ 18%] 477s testsuite/MDAnalysisTests/core/test_atom.py::TestAtom::test_bad_add PASSED [ 18%] 477s testsuite/MDAnalysisTests/core/test_atom.py::TestAtom::test_add_AG PASSED [ 18%] 477s testsuite/MDAnalysisTests/core/test_atom.py::TestAtom::test_no_velo PASSED [ 18%] 477s testsuite/MDAnalysisTests/core/test_atom.py::TestAtom::test_bonded_atoms PASSED [ 18%] 477s testsuite/MDAnalysisTests/core/test_atom.py::TestAtom::test_undefined_occupancy PASSED [ 18%] 478s testsuite/MDAnalysisTests/core/test_atom.py::TestAtom::test_atom_pickle[1] PASSED [ 18%] 478s testsuite/MDAnalysisTests/core/test_atom.py::TestAtom::test_atom_pickle[-1] PASSED [ 18%] 478s testsuite/MDAnalysisTests/core/test_atom.py::TestAtomNoForceNoVel::test_velocity_fail PASSED [ 18%] 478s testsuite/MDAnalysisTests/core/test_atom.py::TestAtomNoForceNoVel::test_force_fail PASSED [ 18%] 478s testsuite/MDAnalysisTests/core/test_atom.py::TestAtomNoForceNoVel::test_velocity_set_fail PASSED [ 18%] 478s testsuite/MDAnalysisTests/core/test_atom.py::TestAtomNoForceNoVel::test_force_set_fail PASSED [ 18%] 478s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroupToTopology::test_bond PASSED [ 18%] 478s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroupToTopology::test_angle PASSED [ 18%] 478s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroupToTopology::test_dihedral PASSED [ 18%] 478s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroupToTopology::test_improper PASSED [ 18%] 478s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroupToTopology::test_VE[bond] PASSED [ 18%] 478s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroupToTopology::test_VE[angle] PASSED [ 18%] 478s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroupToTopology::test_VE[dihedral] PASSED [ 18%] 478s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroupToTopology::test_VE[improper] PASSED [ 18%] 479s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroupWriting::test_write_no_args PASSED [ 18%] 479s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroupWriting::test_raises_unknown_format PASSED [ 18%] 480s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroupWriting::test_write_coordinates PASSED [ 18%] 480s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroupWriting::test_write_frames[frames0] PASSED [ 18%] 480s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroupWriting::test_write_frames[frames1] PASSED [ 18%] 480s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroupWriting::test_write_frames[frames2] PASSED [ 18%] 480s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroupWriting::test_write_frame_iterator[frames0] PASSED [ 18%] 480s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroupWriting::test_write_frame_iterator[frames1] PASSED [ 18%] 480s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroupWriting::test_write_frame_iterator[frames2] PASSED [ 18%] 480s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroupWriting::test_write_frame_none[-xtc] PASSED [ 18%] 480s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroupWriting::test_write_frame_none[-dcd] PASSED [ 18%] 481s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroupWriting::test_write_frame_none[-pdb] PASSED [ 18%] 481s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroupWriting::test_write_frame_none[-xyz] PASSED [ 18%] 481s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroupWriting::test_write_frame_none[-PDB] PASSED [ 18%] 481s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroupWriting::test_write_frame_none[.gz-xtc] PASSED [ 18%] 481s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroupWriting::test_write_frame_none[.gz-dcd] PASSED [ 18%] 482s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroupWriting::test_write_frame_none[.gz-pdb] PASSED [ 18%] 482s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroupWriting::test_write_frame_none[.gz-xyz] PASSED [ 18%] 483s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroupWriting::test_write_frame_none[.gz-PDB] PASSED [ 18%] 483s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroupWriting::test_write_frame_none[.bz2-xtc] PASSED [ 18%] 483s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroupWriting::test_write_frame_none[.bz2-dcd] PASSED [ 18%] 484s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroupWriting::test_write_frame_none[.bz2-pdb] PASSED [ 18%] 484s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroupWriting::test_write_frame_none[.bz2-xyz] PASSED [ 18%] 485s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroupWriting::test_write_frame_none[.bz2-PDB] PASSED [ 18%] 485s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroupWriting::test_write_frames_all[] PASSED [ 19%] 485s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroupWriting::test_write_frames_all[.gz] PASSED [ 19%] 485s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroupWriting::test_write_frames_all[.bz2] PASSED [ 19%] 485s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroupWriting::test_write_frames_invalid[invalid] PASSED [ 19%] 485s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroupWriting::test_write_frames_invalid[8] PASSED [ 19%] 485s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroupWriting::test_write_frames_invalid[True] PASSED [ 19%] 485s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroupWriting::test_write_frames_invalid[False] PASSED [ 19%] 486s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroupWriting::test_write_frames_invalid[3.2] PASSED [ 19%] 486s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroupWriting::test_incompatible_arguments PASSED [ 19%] 486s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroupWriting::test_incompatible_trajectories PASSED [ 19%] 486s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroupWriting::test_write_no_traj_move PASSED [ 19%] 486s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroupWriting::test_write_selection PASSED [ 19%] 486s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroupWriting::test_bogus_kwarg_pdb PASSED [ 19%] 486s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestWritePDB::test_write_atoms[] PASSED [ 19%] 487s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestWritePDB::test_write_atoms[.gz] PASSED [ 19%] 488s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestWritePDB::test_write_atoms[.bz2] PASSED [ 19%] 488s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestWritePDB::test_write_empty_atomgroup PASSED [ 19%] 488s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestWritePDB::test_write_selection[name CA] PASSED [ 19%] 488s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestWritePDB::test_write_selection[segid 4AKE and resname LEU] PASSED [ 19%] 489s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestWritePDB::test_write_selection[segid 4AKE] PASSED [ 19%] 489s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestWritePDB::test_write_Residue PASSED [ 19%] 489s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestWritePDB::test_write_Universe PASSED [ 19%] 489s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestWriteGRO::test_write_atoms[] PASSED [ 19%] 490s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestWriteGRO::test_write_atoms[.gz] PASSED [ 19%] 490s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestWriteGRO::test_write_atoms[.bz2] PASSED [ 19%] 490s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestWriteGRO::test_write_empty_atomgroup PASSED [ 19%] 490s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestWriteGRO::test_write_selection[name CA] PASSED [ 19%] 490s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestWriteGRO::test_write_selection[segid 4AKE and resname LEU] PASSED [ 19%] 490s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestWriteGRO::test_write_selection[segid 4AKE] PASSED [ 19%] 490s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestWriteGRO::test_write_Residue PASSED [ 19%] 490s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestWriteGRO::test_write_Universe PASSED [ 19%] 491s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroupTransformations::test_translate PASSED [ 19%] 491s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroupTransformations::test_rotate PASSED [ 19%] 491s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroupTransformations::test_rotateby PASSED [ 19%] 491s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroupTransformations::test_transform_rotation_only PASSED [ 19%] 491s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroupTransformations::test_transform_translation_only PASSED [ 19%] 491s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroupTransformations::test_transform_translation_and_rotation PASSED [ 19%] 491s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestCenter::test_center_1 PASSED [ 19%] 491s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestCenter::test_center_2 PASSED [ 19%] 491s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestCenter::test_center_duplicates PASSED [ 19%] 491s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestCenter::test_center_wrong_length PASSED [ 19%] 491s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestCenter::test_center_wrong_shape PASSED [ 19%] 491s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestCenter::test_center_unwrap[False-fragments-atoms] PASSED [ 19%] 491s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestCenter::test_center_unwrap[False-fragments-residues] PASSED [ 19%] 491s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestCenter::test_center_unwrap[False-fragments-segments] PASSED [ 19%] 491s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestCenter::test_center_unwrap[False-molecules-atoms] PASSED [ 19%] 491s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestCenter::test_center_unwrap[False-molecules-residues] PASSED [ 19%] 491s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestCenter::test_center_unwrap[False-molecules-segments] PASSED [ 19%] 491s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestCenter::test_center_unwrap[False-residues-atoms] PASSED [ 19%] 491s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestCenter::test_center_unwrap[False-residues-residues] PASSED [ 19%] 491s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestCenter::test_center_unwrap[False-residues-segments] PASSED [ 19%] 491s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestCenter::test_center_unwrap[False-group-atoms] PASSED [ 19%] 491s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestCenter::test_center_unwrap[False-group-residues] PASSED [ 19%] 491s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestCenter::test_center_unwrap[False-group-segments] PASSED [ 19%] 491s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestCenter::test_center_unwrap[False-segments-atoms] PASSED [ 19%] 491s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestCenter::test_center_unwrap[False-segments-residues] PASSED [ 19%] 491s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestCenter::test_center_unwrap[False-segments-segments] PASSED [ 19%] 491s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestCenter::test_center_unwrap[True-fragments-atoms] PASSED [ 19%] 491s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestCenter::test_center_unwrap[True-fragments-residues] PASSED [ 19%] 491s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestCenter::test_center_unwrap[True-fragments-segments] PASSED [ 19%] 491s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestCenter::test_center_unwrap[True-molecules-atoms] PASSED [ 19%] 491s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestCenter::test_center_unwrap[True-molecules-residues] PASSED [ 19%] 491s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestCenter::test_center_unwrap[True-molecules-segments] PASSED [ 19%] 491s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestCenter::test_center_unwrap[True-residues-atoms] PASSED [ 19%] 491s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestCenter::test_center_unwrap[True-residues-residues] PASSED [ 19%] 491s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestCenter::test_center_unwrap[True-residues-segments] PASSED [ 19%] 491s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestCenter::test_center_unwrap[True-group-atoms] PASSED [ 19%] 491s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestCenter::test_center_unwrap[True-group-residues] PASSED [ 19%] 491s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestCenter::test_center_unwrap[True-group-segments] PASSED [ 19%] 491s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestCenter::test_center_unwrap[True-segments-atoms] PASSED [ 19%] 491s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestCenter::test_center_unwrap[True-segments-residues] PASSED [ 19%] 491s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestCenter::test_center_unwrap[True-segments-segments] PASSED [ 19%] 491s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestCenter::test_center_unwrap_wrap_true_group PASSED [ 19%] 491s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestSplit::test_split_atoms PASSED [ 19%] 491s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestSplit::test_split_residues PASSED [ 19%] 491s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestSplit::test_split_segments PASSED [ 19%] 492s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestSplit::test_split_VE PASSED [ 19%] 492s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroupProperties::test_ag_matches_atom[name-names-string] PASSED [ 19%] 492s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroupProperties::test_ag_matches_atom[type-types-string] PASSED [ 19%] 492s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroupProperties::test_ag_matches_atom[altLoc-altLocs-string] PASSED [ 19%] 492s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroupProperties::test_ag_matches_atom[charge-charges-float] PASSED [ 19%] 492s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroupProperties::test_ag_matches_atom[mass-masses-float] PASSED [ 19%] 492s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroupProperties::test_ag_matches_atom[radius-radii-float] PASSED [ 19%] 492s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroupProperties::test_ag_matches_atom[bfactor-bfactors-float] PASSED [ 19%] 492s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroupProperties::test_ag_matches_atom[occupancy-occupancies-float] PASSED [ 19%] 492s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroupProperties::test_atom_check_ag[name-names-string] PASSED [ 19%] 492s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroupProperties::test_atom_check_ag[type-types-string] PASSED [ 19%] 492s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroupProperties::test_atom_check_ag[altLoc-altLocs-string] PASSED [ 19%] 492s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroupProperties::test_atom_check_ag[charge-charges-float] PASSED [ 19%] 492s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroupProperties::test_atom_check_ag[mass-masses-float] PASSED [ 19%] 492s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroupProperties::test_atom_check_ag[radius-radii-float] PASSED [ 19%] 492s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroupProperties::test_atom_check_ag[bfactor-bfactors-float] PASSED [ 19%] 492s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroupProperties::test_atom_check_ag[occupancy-occupancies-float] PASSED [ 19%] 492s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroupProperties::test_ag_unique_restore_mask PASSED [ 19%] 492s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestOrphans::test_atom PASSED [ 19%] 492s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestOrphans::test_atomgroup PASSED [ 19%] 492s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestCrossUniverse::test_add_mixed_universes[0-0] PASSED [ 19%] 492s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestCrossUniverse::test_add_mixed_universes[0-1] PASSED [ 19%] 492s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestCrossUniverse::test_add_mixed_universes[1-0] PASSED [ 19%] 492s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestCrossUniverse::test_add_mixed_universes[1-1] PASSED [ 19%] 492s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestCrossUniverse::test_adding_empty_ags PASSED [ 19%] 492s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestDihedralSelections::test_phi_selection PASSED [ 19%] 492s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestDihedralSelections::test_phi_selection_name[kwargs0-names0] PASSED [ 19%] 492s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestDihedralSelections::test_phi_selection_name[kwargs1-names1] PASSED [ 19%] 492s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestDihedralSelections::test_phi_selection_name[kwargs2-names2] PASSED [ 19%] 492s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestDihedralSelections::test_phi_selections_single PASSED [ 19%] 492s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestDihedralSelections::test_phi_selections PASSED [ 19%] 492s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestDihedralSelections::test_phi_selections_name[kwargs0-names0] PASSED [ 19%] 492s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestDihedralSelections::test_phi_selections_name[kwargs1-names1] PASSED [ 19%] 492s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestDihedralSelections::test_phi_selections_name[kwargs2-names2] PASSED [ 19%] 492s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestDihedralSelections::test_psi_selection PASSED [ 19%] 492s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestDihedralSelections::test_psi_selection_name[kwargs0-names0] PASSED [ 19%] 492s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestDihedralSelections::test_psi_selection_name[kwargs1-names1] PASSED [ 19%] 492s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestDihedralSelections::test_psi_selection_name[kwargs2-names2] PASSED [ 19%] 492s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestDihedralSelections::test_psi_selections_single PASSED [ 19%] 492s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestDihedralSelections::test_psi_selections PASSED [ 19%] 492s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestDihedralSelections::test_psi_selections_name[kwargs0-names0] PASSED [ 19%] 492s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestDihedralSelections::test_psi_selections_name[kwargs1-names1] PASSED [ 19%] 492s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestDihedralSelections::test_psi_selections_name[kwargs2-names2] PASSED [ 19%] 492s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestDihedralSelections::test_omega_selection PASSED [ 19%] 492s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestDihedralSelections::test_omega_selection_name[kwargs0-names0] PASSED [ 19%] 492s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestDihedralSelections::test_omega_selection_name[kwargs1-names1] PASSED [ 19%] 492s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestDihedralSelections::test_omega_selection_name[kwargs2-names2] PASSED [ 19%] 492s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestDihedralSelections::test_omega_selections_single PASSED [ 19%] 492s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestDihedralSelections::test_omega_selections PASSED [ 19%] 492s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestDihedralSelections::test_omega_selections_name[kwargs0-names0] PASSED [ 19%] 492s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestDihedralSelections::test_omega_selections_name[kwargs1-names1] PASSED [ 19%] 492s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestDihedralSelections::test_omega_selections_name[kwargs2-names2] PASSED [ 19%] 492s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestDihedralSelections::test_chi1_selection PASSED [ 19%] 492s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestDihedralSelections::test_chi1_selection_name[kwargs0-names0] PASSED [ 19%] 492s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestDihedralSelections::test_chi1_selection_name[kwargs1-names1] PASSED [ 19%] 492s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestDihedralSelections::test_chi1_selection_name[kwargs2-names2] PASSED [ 19%] 492s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestDihedralSelections::test_chi1_selection_name[kwargs3-names3] PASSED [ 19%] 492s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestDihedralSelections::test_chi1_selections_single PASSED [ 19%] 492s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestDihedralSelections::test_chi1_selections PASSED [ 19%] 492s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestDihedralSelections::test_chi1_selections_non_cg[CYS] PASSED [ 19%] 492s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestDihedralSelections::test_chi1_selections_non_cg[ILE] PASSED [ 19%] 492s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestDihedralSelections::test_chi1_selections_non_cg[SER] PASSED [ 19%] 492s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestDihedralSelections::test_chi1_selections_non_cg[THR] PASSED [ 19%] 492s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestDihedralSelections::test_chi1_selections_non_cg[VAL] PASSED [ 19%] 492s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestDihedralSelections::test_chi1_selection_non_cg_gromacs[CYSH] PASSED [ 19%] 493s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestDihedralSelections::test_chi1_selection_non_cg_gromacs[ILE] PASSED [ 19%] 493s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestDihedralSelections::test_chi1_selection_non_cg_gromacs[SER] PASSED [ 19%] 493s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestDihedralSelections::test_chi1_selection_non_cg_gromacs[THR] PASSED [ 19%] 494s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestDihedralSelections::test_chi1_selection_non_cg_gromacs[VAL] PASSED [ 19%] 494s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestDihedralSelections::test_chi1_selection_non_cg_charmm[CYS] PASSED [ 19%] 494s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestDihedralSelections::test_chi1_selection_non_cg_charmm[ILE] PASSED [ 19%] 494s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestDihedralSelections::test_chi1_selection_non_cg_charmm[SER] PASSED [ 19%] 494s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestDihedralSelections::test_chi1_selection_non_cg_charmm[THR] PASSED [ 19%] 494s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestDihedralSelections::test_chi1_selection_non_cg_charmm[VAL] PASSED [ 19%] 494s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestDihedralSelections::test_chi1_selection_all_res[ARG] PASSED [ 19%] 495s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestDihedralSelections::test_chi1_selection_all_res[ASP] PASSED [ 19%] 495s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestDihedralSelections::test_chi1_selection_all_res[CYS] PASSED [ 19%] 495s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestDihedralSelections::test_chi1_selection_all_res[GLN] PASSED [ 19%] 496s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestDihedralSelections::test_chi1_selection_all_res[GLU] PASSED [ 19%] 496s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestDihedralSelections::test_chi1_selection_all_res[HIS] PASSED [ 19%] 496s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestDihedralSelections::test_chi1_selection_all_res[ILE] PASSED [ 19%] 497s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestDihedralSelections::test_chi1_selection_all_res[LEU] PASSED [ 19%] 497s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestDihedralSelections::test_chi1_selection_all_res[LYS] PASSED [ 19%] 498s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestDihedralSelections::test_chi1_selection_all_res[MET] PASSED [ 19%] 498s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestDihedralSelections::test_chi1_selection_all_res[PHE] PASSED [ 19%] 498s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestDihedralSelections::test_chi1_selection_all_res[PRO] PASSED [ 19%] 499s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestDihedralSelections::test_chi1_selection_all_res[SER] PASSED [ 19%] 499s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestDihedralSelections::test_chi1_selection_all_res[THR] PASSED [ 19%] 499s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestDihedralSelections::test_chi1_selection_all_res[TRP] PASSED [ 19%] 500s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestDihedralSelections::test_chi1_selection_all_res[TYR] PASSED [ 19%] 500s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestDihedralSelections::test_chi1_selection_all_res[VAL] PASSED [ 19%] 500s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestDihedralSelections::test_no_chi1[ALA] PASSED [ 19%] 501s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestDihedralSelections::test_no_chi1[GLY] PASSED [ 19%] 501s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestDihedralSelections::test_phi_sel_fail PASSED [ 19%] 501s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestDihedralSelections::test_phi_sels_fail PASSED [ 19%] 501s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestDihedralSelections::test_psi_sel_fail PASSED [ 19%] 501s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestDihedralSelections::test_psi_sels_fail PASSED [ 19%] 501s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestDihedralSelections::test_omega_sel_fail PASSED [ 19%] 501s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestDihedralSelections::test_omega_sels_fail PASSED [ 19%] 501s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestDihedralSelections::test_ch1_sel_fail PASSED [ 19%] 501s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestDihedralSelections::test_chi1_sels_fail PASSED [ 19%] 501s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestDihedralSelections::test_dihedral_phi PASSED [ 19%] 501s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestDihedralSelections::test_dihedral_psi PASSED [ 19%] 501s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestDihedralSelections::test_dihedral_omega PASSED [ 19%] 501s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestDihedralSelections::test_dihedral_chi1 PASSED [ 19%] 501s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestDihedralSelections::test_phi_nodep PASSED [ 19%] 501s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestDihedralSelections::test_psi_nodep PASSED [ 19%] 501s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestDihedralSelections::test_omega_nodep PASSED [ 19%] 501s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestDihedralSelections::test_chi1_nodep PASSED [ 20%] 501s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestUnwrapFlag::test_residues[False-center_of_geometry-True-ref0] PASSED [ 20%] 501s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestUnwrapFlag::test_residues[False-center_of_geometry-False-ref1] PASSED [ 20%] 501s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestUnwrapFlag::test_residues[False-center_of_mass-True-ref0] PASSED [ 20%] 501s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestUnwrapFlag::test_residues[False-center_of_mass-False-ref1] PASSED [ 20%] 501s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestUnwrapFlag::test_residues[False-moment_of_inertia-True-ref0] PASSED [ 20%] 501s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestUnwrapFlag::test_residues[False-moment_of_inertia-False-ref1] PASSED [ 20%] 501s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestUnwrapFlag::test_residues[False-asphericity-True-ref0] PASSED [ 20%] 501s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestUnwrapFlag::test_residues[False-asphericity-False-ref1] PASSED [ 20%] 501s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestUnwrapFlag::test_residues[False-shape_parameter-True-ref0] PASSED [ 20%] 501s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestUnwrapFlag::test_residues[False-shape_parameter-False-ref1] PASSED [ 20%] 501s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestUnwrapFlag::test_residues[True-center_of_geometry-True-ref0] PASSED [ 20%] 501s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestUnwrapFlag::test_residues[True-center_of_geometry-False-ref1] PASSED [ 20%] 502s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestUnwrapFlag::test_residues[True-center_of_mass-True-ref0] PASSED [ 20%] 502s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestUnwrapFlag::test_residues[True-center_of_mass-False-ref1] PASSED [ 20%] 502s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestUnwrapFlag::test_residues[True-moment_of_inertia-True-ref0] PASSED [ 20%] 502s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestUnwrapFlag::test_residues[True-moment_of_inertia-False-ref1] PASSED [ 20%] 502s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestUnwrapFlag::test_residues[True-asphericity-True-ref0] PASSED [ 20%] 502s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestUnwrapFlag::test_residues[True-asphericity-False-ref1] PASSED [ 20%] 502s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestUnwrapFlag::test_residues[True-shape_parameter-True-ref0] PASSED [ 20%] 502s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestUnwrapFlag::test_residues[True-shape_parameter-False-ref1] PASSED [ 20%] 502s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestUnwrapFlag::test_group[center_of_geometry-True-ref0] PASSED [ 20%] 502s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestUnwrapFlag::test_group[center_of_geometry-False-ref1] PASSED [ 20%] 502s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestUnwrapFlag::test_group[center_of_mass-True-ref0] PASSED [ 20%] 502s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestUnwrapFlag::test_group[center_of_mass-False-ref1] PASSED [ 20%] 502s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestUnwrapFlag::test_group[moment_of_inertia-True-ref0] PASSED [ 20%] 502s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestUnwrapFlag::test_group[moment_of_inertia-False-ref1] PASSED [ 20%] 502s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestUnwrapFlag::test_group[asphericity-True-ref0] PASSED [ 20%] 502s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestUnwrapFlag::test_group[asphericity-False-ref1] PASSED [ 20%] 502s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestPBCFlag::test_wrap[center_of_geometry-True-ref0] PASSED [ 20%] 502s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestPBCFlag::test_wrap[center_of_geometry-False-ref1] PASSED [ 20%] 502s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestPBCFlag::test_wrap[center_of_mass-True-ref0] PASSED [ 20%] 502s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestPBCFlag::test_wrap[center_of_mass-False-ref1] PASSED [ 20%] 502s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestPBCFlag::test_wrap[radius_of_gyration-True-ref0] PASSED [ 20%] 502s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestPBCFlag::test_wrap[radius_of_gyration-False-ref1] PASSED [ 20%] 502s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestPBCFlag::test_wrap[shape_parameter-True-ref0] PASSED [ 20%] 503s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestPBCFlag::test_wrap[shape_parameter-False-ref1] PASSED [ 20%] 503s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestPBCFlag::test_wrap[asphericity-True-ref0] PASSED [ 20%] 503s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestPBCFlag::test_wrap[asphericity-False-ref1] PASSED [ 20%] 503s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestPBCFlag::test_wrap[moment_of_inertia-True-ref0] PASSED [ 20%] 503s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestPBCFlag::test_wrap[moment_of_inertia-False-ref1] PASSED [ 20%] 503s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestPBCFlag::test_wrap[bbox-True-ref0] PASSED [ 20%] 503s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestPBCFlag::test_wrap[bbox-False-ref1] PASSED [ 20%] 503s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestPBCFlag::test_wrap[bsphere-True-ref0] PASSED [ 20%] 503s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestPBCFlag::test_wrap[bsphere-False-ref1] PASSED [ 20%] 503s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestPBCFlag::test_wrap[principal_axes-True-ref0] PASSED [ 20%] 503s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestPBCFlag::test_wrap[principal_axes-False-ref1] PASSED [ 20%] 503s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroup::test_getitem_int PASSED [ 20%] 503s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroup::test_getitem_slice PASSED [ 20%] 503s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroup::test_getitem_slice2 PASSED [ 20%] 503s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroup::test_getitem_IE PASSED [ 20%] 503s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroup::test_bad_make PASSED [ 20%] 503s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroup::test_n_atoms PASSED [ 20%] 503s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroup::test_n_residues PASSED [ 20%] 504s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroup::test_zero_atoms_residues PASSED [ 20%] 504s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroup::test_n_segments PASSED [ 20%] 504s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroup::test_zero_atoms_segments PASSED [ 20%] 504s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroup::test_resids_dim PASSED [ 20%] 504s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroup::test_resnums_dim PASSED [ 20%] 504s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroup::test_segids_dim PASSED [ 20%] 504s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroup::test_len PASSED [ 20%] 504s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroup::test_center_of_geometry PASSED [ 20%] 504s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroup::test_center_of_mass PASSED [ 20%] 504s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroup::test_center_duplicates[center_of_geometry] PASSED [ 20%] 504s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroup::test_center_duplicates[center_of_mass] PASSED [ 20%] 504s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroup::test_center_compounds[resids-residues-center_of_geometry] PASSED [ 20%] 504s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroup::test_center_compounds[resids-residues-center_of_mass] PASSED [ 20%] 504s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroup::test_center_compounds[segids-segments-center_of_geometry] PASSED [ 20%] 505s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroup::test_center_compounds[segids-segments-center_of_mass] PASSED [ 20%] 505s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroup::test_center_compounds_pbc[True-resids-residues-center_of_geometry] PASSED [ 20%] 505s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroup::test_center_compounds_pbc[True-resids-residues-center_of_mass] PASSED [ 20%] 505s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroup::test_center_compounds_pbc[True-segids-segments-center_of_geometry] PASSED [ 20%] 506s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroup::test_center_compounds_pbc[True-segids-segments-center_of_mass] PASSED [ 20%] 506s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroup::test_center_compounds_pbc[False-resids-residues-center_of_geometry] PASSED [ 20%] 506s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroup::test_center_compounds_pbc[False-resids-residues-center_of_mass] PASSED [ 20%] 506s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroup::test_center_compounds_pbc[False-segids-segments-center_of_geometry] PASSED [ 20%] 506s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroup::test_center_compounds_pbc[False-segids-segments-center_of_mass] PASSED [ 20%] 507s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroup::test_center_compounds_special[molnums-molecules-center_of_geometry] PASSED [ 20%] 507s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroup::test_center_compounds_special[molnums-molecules-center_of_mass] PASSED [ 20%] 508s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroup::test_center_compounds_special[fragindices-fragments-center_of_geometry] PASSED [ 20%] 509s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroup::test_center_compounds_special[fragindices-fragments-center_of_mass] PASSED [ 20%] 510s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroup::test_center_compounds_special_pbc[True-molnums-molecules-center_of_geometry] PASSED [ 20%] 511s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroup::test_center_compounds_special_pbc[True-molnums-molecules-center_of_mass] PASSED [ 20%] 512s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroup::test_center_compounds_special_pbc[True-fragindices-fragments-center_of_geometry] PASSED [ 20%] 514s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroup::test_center_compounds_special_pbc[True-fragindices-fragments-center_of_mass] PASSED [ 20%] 514s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroup::test_center_compounds_special_pbc[False-molnums-molecules-center_of_geometry] PASSED [ 20%] 515s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroup::test_center_compounds_special_pbc[False-molnums-molecules-center_of_mass] PASSED [ 20%] 516s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroup::test_center_compounds_special_pbc[False-fragindices-fragments-center_of_geometry] PASSED [ 20%] 517s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroup::test_center_compounds_special_pbc[False-fragindices-fragments-center_of_mass] PASSED [ 20%] 517s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroup::test_center_wrong_compound PASSED [ 20%] 517s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroup::test_center_compounds_special_fail[molecules] PASSED [ 20%] 517s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroup::test_center_compounds_special_fail[fragments] PASSED [ 20%] 517s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroup::test_center_compounds_single[False-group-None] PASSED [ 20%] 518s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroup::test_center_compounds_single[False-group-weights1] PASSED [ 20%] 518s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroup::test_center_compounds_single[False-group-weights2] PASSED [ 20%] 518s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroup::test_center_compounds_single[False-residues-None] PASSED [ 20%] 518s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroup::test_center_compounds_single[False-residues-weights1] PASSED [ 20%] 518s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroup::test_center_compounds_single[False-residues-weights2] PASSED [ 20%] 518s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroup::test_center_compounds_single[False-segments-None] PASSED [ 20%] 518s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroup::test_center_compounds_single[False-segments-weights1] PASSED [ 20%] 518s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroup::test_center_compounds_single[False-segments-weights2] PASSED [ 20%] 519s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroup::test_center_compounds_single[False-molecules-None] PASSED [ 20%] 519s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroup::test_center_compounds_single[False-molecules-weights1] PASSED [ 20%] 519s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroup::test_center_compounds_single[False-molecules-weights2] PASSED [ 20%] 519s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroup::test_center_compounds_single[False-fragments-None] PASSED [ 20%] 519s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroup::test_center_compounds_single[False-fragments-weights1] PASSED [ 20%] 520s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroup::test_center_compounds_single[False-fragments-weights2] PASSED [ 20%] 520s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroup::test_center_compounds_single[True-group-None] PASSED [ 20%] 520s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroup::test_center_compounds_single[True-group-weights1] PASSED [ 20%] 521s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroup::test_center_compounds_single[True-group-weights2] PASSED [ 20%] 521s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroup::test_center_compounds_single[True-residues-None] PASSED [ 20%] 521s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroup::test_center_compounds_single[True-residues-weights1] PASSED [ 20%] 521s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroup::test_center_compounds_single[True-residues-weights2] PASSED [ 20%] 521s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroup::test_center_compounds_single[True-segments-None] PASSED [ 20%] 521s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroup::test_center_compounds_single[True-segments-weights1] PASSED [ 20%] 521s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroup::test_center_compounds_single[True-segments-weights2] PASSED [ 20%] 521s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroup::test_center_compounds_single[True-molecules-None] PASSED [ 20%] 521s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroup::test_center_compounds_single[True-molecules-weights1] PASSED [ 20%] 521s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroup::test_center_compounds_single[True-molecules-weights2] PASSED [ 20%] 522s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroup::test_center_compounds_single[True-fragments-None] PASSED [ 20%] 522s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroup::test_center_compounds_single[True-fragments-weights1] PASSED [ 20%] 523s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroup::test_center_compounds_single[True-fragments-weights2] PASSED [ 20%] 523s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroup::test_center_compounds_empty[group-None-False] PASSED [ 20%] 523s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroup::test_center_compounds_empty[group-None-True] PASSED [ 20%] 523s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroup::test_center_compounds_empty[group-weights1-False] PASSED [ 20%] 523s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroup::test_center_compounds_empty[group-weights1-True] PASSED [ 20%] 523s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroup::test_center_compounds_empty[residues-None-False] PASSED [ 20%] 523s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroup::test_center_compounds_empty[residues-None-True] PASSED [ 20%] 524s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroup::test_center_compounds_empty[residues-weights1-False] PASSED [ 20%] 524s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroup::test_center_compounds_empty[residues-weights1-True] PASSED [ 20%] 524s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroup::test_center_compounds_empty[segments-None-False] PASSED [ 20%] 524s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroup::test_center_compounds_empty[segments-None-True] PASSED [ 20%] 524s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroup::test_center_compounds_empty[segments-weights1-False] PASSED [ 20%] 524s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroup::test_center_compounds_empty[segments-weights1-True] PASSED [ 20%] 524s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroup::test_center_compounds_empty[molecules-None-False] PASSED [ 20%] 524s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroup::test_center_compounds_empty[molecules-None-True] PASSED [ 20%] 524s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroup::test_center_compounds_empty[molecules-weights1-False] PASSED [ 20%] 525s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroup::test_center_compounds_empty[molecules-weights1-True] PASSED [ 20%] 525s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroup::test_center_compounds_empty[fragments-None-False] PASSED [ 20%] 525s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroup::test_center_compounds_empty[fragments-None-True] PASSED [ 20%] 526s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroup::test_center_compounds_empty[fragments-weights1-False] PASSED [ 20%] 526s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroup::test_center_compounds_empty[fragments-weights1-True] PASSED [ 20%] 526s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroup::test_center_compounds_zero_weights[-group-False] PASSED [ 20%] 526s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroup::test_center_compounds_zero_weights[-group-True] PASSED [ 20%] 526s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroup::test_center_compounds_zero_weights[resids-residues-False] PASSED [ 20%] 527s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroup::test_center_compounds_zero_weights[resids-residues-True] PASSED [ 20%] 527s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroup::test_center_compounds_zero_weights[segids-segments-False] PASSED [ 20%] 527s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroup::test_center_compounds_zero_weights[segids-segments-True] PASSED [ 20%] 527s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroup::test_center_compounds_zero_weights[molnums-molecules-False] PASSED [ 20%] 528s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroup::test_center_compounds_zero_weights[molnums-molecules-True] PASSED [ 20%] 528s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroup::test_center_compounds_zero_weights[fragindices-fragments-False] PASSED [ 20%] 529s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroup::test_center_compounds_zero_weights[fragindices-fragments-True] PASSED [ 20%] 529s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroup::test_coordinates PASSED [ 20%] 529s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroup::test_principal_axes PASSED [ 20%] 529s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroup::test_principal_axes_duplicates PASSED [ 20%] 529s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroup::test_moment_of_inertia_duplicates PASSED [ 20%] 529s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroup::test_radius_of_gyration_duplicates PASSED [ 20%] 529s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroup::test_indices_ndarray PASSED [ 20%] 529s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroup::test_indices PASSED [ 20%] 529s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroup::test_resids_ndarray PASSED [ 20%] 529s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroup::test_resids PASSED [ 20%] 530s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroup::test_resnums_ndarray PASSED [ 20%] 530s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroup::test_resnums PASSED [ 20%] 530s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroup::test_resnames_ndarray PASSED [ 20%] 530s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroup::test_resnames PASSED [ 20%] 530s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroup::test_names_ndarray PASSED [ 20%] 530s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroup::test_names PASSED [ 20%] 530s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroup::test_segids_ndarray PASSED [ 20%] 530s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroup::test_segids PASSED [ 20%] 530s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroup::test_masses_ndarray PASSED [ 20%] 530s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroup::test_masses PASSED [ 20%] 531s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroup::test_charges_ndarray PASSED [ 20%] 531s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroup::test_charges PASSED [ 20%] 531s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroup::test_bad_add_AG PASSED [ 20%] 531s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroup::test_bool_false PASSED [ 20%] 531s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroup::test_bool_true PASSED [ 20%] 531s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroup::test_repr PASSED [ 20%] 531s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroup::test_set_resnum_single PASSED [ 20%] 531s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroup::test_set_resname_single PASSED [ 20%] 531s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroup::test_packintobox_badshape PASSED [ 20%] 531s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroup::test_packintobox_noshape PASSED [ 20%] 531s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroup::test_packintobox PASSED [ 20%] 531s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroup::test_residues PASSED [ 20%] 531s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroup::test_index_integer PASSED [ 20%] 531s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroup::test_index_slice PASSED [ 20%] 532s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroup::test_index_slice_empty PASSED [ 21%] 532s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroup::test_index_advancedslice PASSED [ 21%] 532s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroup::test_boolean_indexing_2[sel0] PASSED [ 21%] 532s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroup::test_boolean_indexing_2[sel1] PASSED [ 21%] 532s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroup::test_bool_IE PASSED [ 21%] 532s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroup::test_dihedral_ValueError PASSED [ 21%] 532s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroup::test_improper PASSED [ 21%] 532s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroup::test_dihedral_equals_improper PASSED [ 21%] 532s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroup::test_bond PASSED [ 21%] 532s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroup::test_bond_pbc PASSED [ 21%] 532s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroup::test_bond_ValueError PASSED [ 21%] 532s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroup::test_angle PASSED [ 21%] 532s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroup::test_angle_ValueError PASSED [ 21%] 533s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroup::test_shape_parameter PASSED [ 21%] 533s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroup::test_shape_parameter_duplicates PASSED [ 21%] 533s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroup::test_asphericity PASSED [ 21%] 533s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroup::test_asphericity_duplicates PASSED [ 21%] 533s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroup::test_positions PASSED [ 21%] 533s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroup::test_set_names PASSED [ 21%] 533s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroup::test_atom_order PASSED [ 21%] 533s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroupTimestep::test_partial_timestep PASSED [ 21%] 533s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroupSort::test_sort[ix] PASSED [ 21%] 533s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroupSort::test_sort[ids] PASSED [ 21%] 533s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroupSort::test_sort[resids] PASSED [ 21%] 533s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroupSort::test_sort[segids] PASSED [ 21%] 533s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroupSort::test_sort[charges] PASSED [ 21%] 533s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroupSort::test_sort[masses] PASSED [ 21%] 533s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroupSort::test_sort[tempfactors] PASSED [ 21%] 533s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroupSort::test_sort_bonds PASSED [ 21%] 533s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroupSort::test_sort_positions_2D PASSED [ 21%] 533s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroupSort::test_sort_position_no_keyfunc PASSED [ 21%] 533s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroupSort::test_sort_position PASSED [ 21%] 533s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroupPickle::test_atomgroup_pickle[name CA] PASSED [ 21%] 533s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroupPickle::test_atomgroup_pickle[segid 4AKE] PASSED [ 21%] 534s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionsCHARMM::test_segid PASSED [ 21%] 534s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionsCHARMM::test_protein PASSED [ 21%] 534s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionsCHARMM::test_protein_resnames[ACE] PASSED [ 21%] 534s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionsCHARMM::test_protein_resnames[ALA] PASSED [ 21%] 534s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionsCHARMM::test_protein_resnames[ALAD] PASSED [ 21%] 534s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionsCHARMM::test_protein_resnames[ARG] PASSED [ 21%] 534s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionsCHARMM::test_protein_resnames[ARGN] PASSED [ 21%] 534s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionsCHARMM::test_protein_resnames[ASF] PASSED [ 21%] 534s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionsCHARMM::test_protein_resnames[ASH] PASSED [ 21%] 534s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionsCHARMM::test_protein_resnames[ASN] PASSED [ 21%] 534s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionsCHARMM::test_protein_resnames[ASN1] PASSED [ 21%] 534s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionsCHARMM::test_protein_resnames[ASP] PASSED [ 21%] 534s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionsCHARMM::test_protein_resnames[ASPH] PASSED [ 21%] 534s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionsCHARMM::test_protein_resnames[CALA] PASSED [ 21%] 534s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionsCHARMM::test_protein_resnames[CARG] PASSED [ 21%] 534s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionsCHARMM::test_protein_resnames[CASF] PASSED [ 21%] 534s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionsCHARMM::test_protein_resnames[CASN] PASSED [ 21%] 534s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionsCHARMM::test_protein_resnames[CASP] PASSED [ 21%] 534s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionsCHARMM::test_protein_resnames[CCYS] PASSED [ 21%] 534s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionsCHARMM::test_protein_resnames[CCYX] PASSED [ 21%] 534s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionsCHARMM::test_protein_resnames[CGLN] PASSED [ 21%] 534s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionsCHARMM::test_protein_resnames[CGLU] PASSED [ 21%] 534s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionsCHARMM::test_protein_resnames[CGLY] PASSED [ 21%] 534s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionsCHARMM::test_protein_resnames[CHID] PASSED [ 21%] 534s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionsCHARMM::test_protein_resnames[CHIE] PASSED [ 21%] 534s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionsCHARMM::test_protein_resnames[CHIP] PASSED [ 21%] 534s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionsCHARMM::test_protein_resnames[CILE] PASSED [ 21%] 534s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionsCHARMM::test_protein_resnames[CLEU] PASSED [ 21%] 534s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionsCHARMM::test_protein_resnames[CLYS] PASSED [ 21%] 534s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionsCHARMM::test_protein_resnames[CME] PASSED [ 21%] 534s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionsCHARMM::test_protein_resnames[CMET] PASSED [ 21%] 534s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionsCHARMM::test_protein_resnames[CPHE] PASSED [ 21%] 534s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionsCHARMM::test_protein_resnames[CPRO] PASSED [ 21%] 534s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionsCHARMM::test_protein_resnames[CSER] PASSED [ 21%] 534s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionsCHARMM::test_protein_resnames[CTHR] PASSED [ 21%] 534s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionsCHARMM::test_protein_resnames[CTRP] PASSED [ 21%] 534s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionsCHARMM::test_protein_resnames[CTYR] PASSED [ 21%] 534s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionsCHARMM::test_protein_resnames[CVAL] PASSED [ 21%] 534s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionsCHARMM::test_protein_resnames[CYM] PASSED [ 21%] 534s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionsCHARMM::test_protein_resnames[CYS] PASSED [ 21%] 534s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionsCHARMM::test_protein_resnames[CYS1] PASSED [ 21%] 534s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionsCHARMM::test_protein_resnames[CYS2] PASSED [ 21%] 534s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionsCHARMM::test_protein_resnames[CYSH] PASSED [ 21%] 534s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionsCHARMM::test_protein_resnames[CYX] PASSED [ 21%] 534s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionsCHARMM::test_protein_resnames[DAB] PASSED [ 21%] 534s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionsCHARMM::test_protein_resnames[GLH] PASSED [ 21%] 534s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionsCHARMM::test_protein_resnames[GLN] PASSED [ 21%] 534s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionsCHARMM::test_protein_resnames[GLU] PASSED [ 21%] 534s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionsCHARMM::test_protein_resnames[GLUH] PASSED [ 21%] 534s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionsCHARMM::test_protein_resnames[GLY] PASSED [ 21%] 534s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionsCHARMM::test_protein_resnames[HID] PASSED [ 21%] 534s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionsCHARMM::test_protein_resnames[HIE] PASSED [ 21%] 534s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionsCHARMM::test_protein_resnames[HIP] PASSED [ 21%] 534s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionsCHARMM::test_protein_resnames[HIS] PASSED [ 21%] 534s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionsCHARMM::test_protein_resnames[HIS1] PASSED [ 21%] 534s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionsCHARMM::test_protein_resnames[HIS2] PASSED [ 21%] 534s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionsCHARMM::test_protein_resnames[HISA] PASSED [ 21%] 534s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionsCHARMM::test_protein_resnames[HISB] PASSED [ 21%] 534s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionsCHARMM::test_protein_resnames[HISD] PASSED [ 21%] 534s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionsCHARMM::test_protein_resnames[HISE] PASSED [ 21%] 534s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionsCHARMM::test_protein_resnames[HISH] PASSED [ 21%] 534s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionsCHARMM::test_protein_resnames[HSD] PASSED [ 21%] 534s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionsCHARMM::test_protein_resnames[HSE] PASSED [ 21%] 534s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionsCHARMM::test_protein_resnames[HSP] PASSED [ 21%] 534s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionsCHARMM::test_protein_resnames[HYP] PASSED [ 21%] 534s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionsCHARMM::test_protein_resnames[ILE] PASSED [ 21%] 534s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionsCHARMM::test_protein_resnames[LEU] PASSED [ 21%] 534s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionsCHARMM::test_protein_resnames[LYN] PASSED [ 21%] 534s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionsCHARMM::test_protein_resnames[LYS] PASSED [ 21%] 534s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionsCHARMM::test_protein_resnames[LYSH] PASSED [ 21%] 534s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionsCHARMM::test_protein_resnames[MET] PASSED [ 21%] 534s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionsCHARMM::test_protein_resnames[MSE] PASSED [ 21%] 534s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionsCHARMM::test_protein_resnames[NALA] PASSED [ 21%] 534s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionsCHARMM::test_protein_resnames[NARG] PASSED [ 21%] 534s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionsCHARMM::test_protein_resnames[NASN] PASSED [ 21%] 534s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionsCHARMM::test_protein_resnames[NASP] PASSED [ 21%] 534s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionsCHARMM::test_protein_resnames[NCYS] PASSED [ 21%] 534s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionsCHARMM::test_protein_resnames[NCYX] PASSED [ 21%] 534s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionsCHARMM::test_protein_resnames[NGLN] PASSED [ 21%] 534s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionsCHARMM::test_protein_resnames[NGLU] PASSED [ 21%] 534s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionsCHARMM::test_protein_resnames[NGLY] PASSED [ 21%] 534s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionsCHARMM::test_protein_resnames[NHID] PASSED [ 21%] 534s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionsCHARMM::test_protein_resnames[NHIE] PASSED [ 21%] 534s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionsCHARMM::test_protein_resnames[NHIP] PASSED [ 21%] 534s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionsCHARMM::test_protein_resnames[NILE] PASSED [ 21%] 534s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionsCHARMM::test_protein_resnames[NLEU] PASSED [ 21%] 534s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionsCHARMM::test_protein_resnames[NLYS] PASSED [ 21%] 534s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionsCHARMM::test_protein_resnames[NME] PASSED [ 21%] 534s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionsCHARMM::test_protein_resnames[NMET] PASSED [ 21%] 534s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionsCHARMM::test_protein_resnames[NPHE] PASSED [ 21%] 534s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionsCHARMM::test_protein_resnames[NPRO] PASSED [ 21%] 534s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionsCHARMM::test_protein_resnames[NSER] PASSED [ 21%] 534s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionsCHARMM::test_protein_resnames[NTHR] PASSED [ 21%] 534s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionsCHARMM::test_protein_resnames[NTRP] PASSED [ 21%] 534s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionsCHARMM::test_protein_resnames[NTYR] PASSED [ 21%] 534s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionsCHARMM::test_protein_resnames[NVAL] PASSED [ 21%] 534s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionsCHARMM::test_protein_resnames[ORN] PASSED [ 21%] 534s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionsCHARMM::test_protein_resnames[PGLU] PASSED [ 21%] 534s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionsCHARMM::test_protein_resnames[PHE] PASSED [ 21%] 534s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionsCHARMM::test_protein_resnames[PRO] PASSED [ 21%] 534s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionsCHARMM::test_protein_resnames[QLN] PASSED [ 21%] 534s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionsCHARMM::test_protein_resnames[SER] PASSED [ 21%] 534s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionsCHARMM::test_protein_resnames[THR] PASSED [ 21%] 534s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionsCHARMM::test_protein_resnames[TRP] PASSED [ 21%] 534s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionsCHARMM::test_protein_resnames[TYR] PASSED [ 21%] 534s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionsCHARMM::test_protein_resnames[VAL] PASSED [ 21%] 534s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionsCHARMM::test_backbone PASSED [ 21%] 534s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionsCHARMM::test_resid_single PASSED [ 21%] 534s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionsCHARMM::test_resid_range PASSED [ 21%] 534s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionsCHARMM::test_selgroup PASSED [ 21%] 534s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionsCHARMM::test_fullselgroup PASSED [ 21%] 534s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionsCHARMM::test_resnum_single PASSED [ 21%] 534s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionsCHARMM::test_resnum_range PASSED [ 21%] 534s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionsCHARMM::test_resname PASSED [ 21%] 534s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionsCHARMM::test_name PASSED [ 21%] 534s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionsCHARMM::test_atom PASSED [ 21%] 534s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionsCHARMM::test_atom_empty PASSED [ 21%] 534s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionsCHARMM::test_type PASSED [ 21%] 534s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionsCHARMM::test_and PASSED [ 21%] 534s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionsCHARMM::test_or PASSED [ 21%] 534s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionsCHARMM::test_not PASSED [ 21%] 534s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionsCHARMM::test_around[around 4.0 bynum 1943] PASSED [ 21%] 534s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionsCHARMM::test_around[around 4.0 index 1942] PASSED [ 21%] 534s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionsCHARMM::test_sphlayer[sphlayer 4.0 6.0 bynum 1281] PASSED [ 21%] 534s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionsCHARMM::test_sphlayer[sphlayer 4.0 6.0 index 1280] PASSED [ 21%] 534s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionsCHARMM::test_isolayer[isolayer 4.0 6.0 bynum 1281] PASSED [ 21%] 534s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionsCHARMM::test_isolayer[isolayer 4.0 6.0 index 1280] PASSED [ 21%] 534s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionsCHARMM::test_sphzone[sphzone 6.0 bynum 1281] PASSED [ 21%] 534s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionsCHARMM::test_sphzone[sphzone 6.0 index 1280] PASSED [ 21%] 534s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionsCHARMM::test_cylayer[cylayer 4.0 6.0 10 -10 bynum 1281] PASSED [ 21%] 534s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionsCHARMM::test_cylayer[cylayer 4.0 6.0 10 -10 index 1280] PASSED [ 21%] 534s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionsCHARMM::test_empty_cylayer PASSED [ 21%] 534s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionsCHARMM::test_cyzone[cyzone 6.0 10 -10 bynum 1281] PASSED [ 21%] 534s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionsCHARMM::test_cyzone[cyzone 6.0 10 -10 index 1280] PASSED [ 21%] 534s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionsCHARMM::test_empty_cyzone PASSED [ 21%] 534s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionsCHARMM::test_point PASSED [ 21%] 534s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionsCHARMM::test_prop PASSED [ 21%] 534s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionsCHARMM::test_bynum PASSED [ 21%] 534s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionsCHARMM::test_index PASSED [ 21%] 534s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionsCHARMM::test_byres[byres bynum 0:5-19] PASSED [ 21%] 534s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionsCHARMM::test_byres[byres index 0:19-43] PASSED [ 21%] 534s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionsCHARMM::test_same_resname PASSED [ 21%] 534s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionsCHARMM::test_same_segment PASSED [ 21%] 534s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionsCHARMM::test_empty_same PASSED [ 21%] 534s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionsCHARMM::test_empty_selection PASSED [ 21%] 534s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionsCHARMM::test_parenthesized_expression PASSED [ 21%] 534s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionsCHARMM::test_no_space_around_parentheses PASSED [ 21%] 534s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionsCHARMM::test_concatenated_selection PASSED [ 21%] 534s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionsCHARMM::test_global PASSED [ 21%] 534s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionsCHARMM::test_wildcard_selection[resname TYR THR-resname T*R] PASSED [ 21%] 534s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionsCHARMM::test_wildcard_selection[resname ASN GLN-resname *N] PASSED [ 22%] 534s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionsCHARMM::test_wildcard_selection[resname ASN ASP-resname AS*] PASSED [ 22%] 534s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionsCHARMM::test_wildcard_selection[resname TYR THR-resname T?R] PASSED [ 22%] 534s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionsCHARMM::test_wildcard_selection[resname ASN ASP HSD-resname *S?] PASSED [ 22%] 534s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionsCHARMM::test_wildcard_selection[resname LEU LYS-resname L**] PASSED [ 22%] 534s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionsCHARMM::test_wildcard_selection[resname MET-resname *M*] PASSED [ 22%] 534s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionsCHARMM::test_wildcard_selection[resname GLN GLY-resname GL[NY]] PASSED [ 22%] 534s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionsCHARMM::test_wildcard_selection[resname GLU-resname GL[!NY]] PASSED [ 22%] 534s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionsAMBER::test_protein PASSED [ 22%] 534s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionsAMBER::test_backbone PASSED [ 22%] 534s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionsAMBER::test_type PASSED [ 22%] 534s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionsNAMD::test_protein PASSED [ 22%] 534s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionsNAMD::test_resid_single PASSED [ 22%] 534s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionsNAMD::test_type PASSED [ 22%] 535s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionsGRO::test_protein PASSED [ 22%] 535s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionsGRO::test_backbone PASSED [ 22%] 535s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionsGRO::test_resid_single PASSED [ 22%] 536s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionsGRO::test_same_coordinate[same x as bynum 1 or bynum 10] PASSED [ 22%] 536s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionsGRO::test_same_coordinate[same x as bynum 1 10] PASSED [ 22%] 536s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionsGRO::test_same_coordinate[same x as index 0 or index 9] PASSED [ 22%] 537s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionsGRO::test_same_coordinate[same x as index 0 9] PASSED [ 22%] 537s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionsGRO::test_cylayer[cylayer 10 20 20 -20 bynum 3554] PASSED [ 22%] 537s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionsGRO::test_cylayer[cylayer 10 20 20 -20 index 3553] PASSED [ 22%] 538s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionsGRO::test_cyzone[cyzone 20 20 -20 bynum 3554] PASSED [ 22%] 538s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionsGRO::test_cyzone[cyzone 20 20 -20 index 3553] PASSED [ 22%] 539s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionsTPR::test_same_fragment[same fragment as bynum 1] PASSED [ 22%] 539s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionsTPR::test_same_fragment[same fragment as index 0] PASSED [ 22%] 539s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionsTPR::test_moltype PASSED [ 22%] 539s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionsTPR::test_molnum[molnum 1-reference0] PASSED [ 22%] 539s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionsTPR::test_molnum[molnum 2:4-reference1] PASSED [ 22%] 539s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionRDKit::test_aromatic_selection[aromatic-5] SKIPPED [ 22%] 539s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionRDKit::test_aromatic_selection[not aromatic-1] SKIPPED [ 22%] 539s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionRDKit::test_aromatic_selection[type N and aromatic-1] SKIPPED [ 22%] 539s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionRDKit::test_aromatic_selection[type C and aromatic-4] SKIPPED [ 22%] 539s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionRDKit::test_smarts_selection[smarts n-indices0] SKIPPED [ 22%] 539s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionRDKit::test_smarts_selection[smarts [#7]-indices1] SKIPPED [ 22%] 539s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionRDKit::test_smarts_selection[smarts a-indices2] SKIPPED [ 22%] 539s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionRDKit::test_smarts_selection[smarts c-indices3] SKIPPED [ 22%] 539s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionRDKit::test_smarts_selection[smarts [*-]-indices4] SKIPPED [ 22%] 539s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionRDKit::test_smarts_selection[smarts [$([!#1]);$([!R][R])]-indices5] SKIPPED [ 22%] 539s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionRDKit::test_smarts_selection[smarts [$([C@H](-[CH2])(-[O-])-C=O)]-indices6] SKIPPED [ 22%] 539s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionRDKit::test_smarts_selection[smarts [$([C@@H](-[CH2])(-[O-])-C=O)]-indices7] SKIPPED [ 22%] 539s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionRDKit::test_smarts_selection[smarts a and type C-indices8] SKIPPED [ 22%] 539s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionRDKit::test_smarts_selection[(smarts a) and (type C)-indices9] SKIPPED [ 22%] 539s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionRDKit::test_smarts_selection[smarts a and type N-indices10] SKIPPED [ 22%] 539s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionRDKit::test_invalid_smarts_sel_raises_error SKIPPED [ 22%] 539s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionRDKit::test_passing_rdkit_kwargs_to_converter SKIPPED [ 22%] 539s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionRDKit::test_passing_max_matches_to_converter SKIPPED [ 22%] 539s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionRDKit::test_passing_use_chirality_to_converter SKIPPED [ 22%] 539s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionsNucleicAcids::test_nucleic PASSED [ 22%] 539s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionsNucleicAcids::test_nucleic_all PASSED [ 22%] 539s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionsNucleicAcids::test_nucleicbackbone PASSED [ 22%] 539s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionsNucleicAcids::test_nucleicbase PASSED [ 22%] 539s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionsNucleicAcids::test_nucleicsugar PASSED [ 22%] 539s testsuite/MDAnalysisTests/core/test_atomselections.py::TestOrthogonalDistanceSelections::test_around[True] PASSED [ 22%] 540s testsuite/MDAnalysisTests/core/test_atomselections.py::TestOrthogonalDistanceSelections::test_around[False] PASSED [ 22%] 540s testsuite/MDAnalysisTests/core/test_atomselections.py::TestOrthogonalDistanceSelections::test_spherical_layer[True] PASSED [ 22%] 540s testsuite/MDAnalysisTests/core/test_atomselections.py::TestOrthogonalDistanceSelections::test_spherical_layer[False] PASSED [ 22%] 540s testsuite/MDAnalysisTests/core/test_atomselections.py::TestOrthogonalDistanceSelections::test_isolayer[True] PASSED [ 22%] 540s testsuite/MDAnalysisTests/core/test_atomselections.py::TestOrthogonalDistanceSelections::test_isolayer[False] PASSED [ 22%] 540s testsuite/MDAnalysisTests/core/test_atomselections.py::TestOrthogonalDistanceSelections::test_spherical_zone[True] PASSED [ 22%] 540s testsuite/MDAnalysisTests/core/test_atomselections.py::TestOrthogonalDistanceSelections::test_spherical_zone[False] PASSED [ 22%] 540s testsuite/MDAnalysisTests/core/test_atomselections.py::TestOrthogonalDistanceSelections::test_point[True] PASSED [ 22%] 540s testsuite/MDAnalysisTests/core/test_atomselections.py::TestOrthogonalDistanceSelections::test_point[False] PASSED [ 22%] 540s testsuite/MDAnalysisTests/core/test_atomselections.py::TestOrthogonalDistanceSelections::test_cyzone[distmat-True] PASSED [ 22%] 540s testsuite/MDAnalysisTests/core/test_atomselections.py::TestOrthogonalDistanceSelections::test_cyzone[distmat-False] PASSED [ 22%] 540s testsuite/MDAnalysisTests/core/test_atomselections.py::TestOrthogonalDistanceSelections::test_sphzone[True-33] PASSED [ 22%] 540s testsuite/MDAnalysisTests/core/test_atomselections.py::TestOrthogonalDistanceSelections::test_sphzone[False-25] PASSED [ 22%] 540s testsuite/MDAnalysisTests/core/test_atomselections.py::TestTriclinicDistanceSelections::test_around[True] PASSED [ 22%] 541s testsuite/MDAnalysisTests/core/test_atomselections.py::TestTriclinicDistanceSelections::test_around[False] PASSED [ 22%] 541s testsuite/MDAnalysisTests/core/test_atomselections.py::TestTriclinicDistanceSelections::test_spherical_layer[True] PASSED [ 22%] 541s testsuite/MDAnalysisTests/core/test_atomselections.py::TestTriclinicDistanceSelections::test_spherical_layer[False] PASSED [ 22%] 542s testsuite/MDAnalysisTests/core/test_atomselections.py::TestTriclinicDistanceSelections::test_isolayer[True] PASSED [ 22%] 542s testsuite/MDAnalysisTests/core/test_atomselections.py::TestTriclinicDistanceSelections::test_isolayer[False] PASSED [ 22%] 542s testsuite/MDAnalysisTests/core/test_atomselections.py::TestTriclinicDistanceSelections::test_spherical_zone[True] PASSED [ 22%] 543s testsuite/MDAnalysisTests/core/test_atomselections.py::TestTriclinicDistanceSelections::test_spherical_zone[False] PASSED [ 22%] 543s testsuite/MDAnalysisTests/core/test_atomselections.py::TestTriclinicDistanceSelections::test_point[True] PASSED [ 22%] 543s testsuite/MDAnalysisTests/core/test_atomselections.py::TestTriclinicDistanceSelections::test_point[False] PASSED [ 22%] 544s testsuite/MDAnalysisTests/core/test_atomselections.py::TestTriclinicSelections::test_around PASSED [ 22%] 544s testsuite/MDAnalysisTests/core/test_atomselections.py::TestTriclinicSelections::test_sphlayer PASSED [ 22%] 545s testsuite/MDAnalysisTests/core/test_atomselections.py::TestTriclinicSelections::test_empty_sphlayer PASSED [ 22%] 545s testsuite/MDAnalysisTests/core/test_atomselections.py::TestTriclinicSelections::test_empty_isolayer PASSED [ 22%] 545s testsuite/MDAnalysisTests/core/test_atomselections.py::TestTriclinicSelections::test_sphzone PASSED [ 22%] 546s testsuite/MDAnalysisTests/core/test_atomselections.py::TestTriclinicSelections::test_empty_sphzone PASSED [ 22%] 546s testsuite/MDAnalysisTests/core/test_atomselections.py::TestTriclinicSelections::test_point_1 PASSED [ 22%] 546s testsuite/MDAnalysisTests/core/test_atomselections.py::TestTriclinicSelections::test_point_2 PASSED [ 22%] 546s testsuite/MDAnalysisTests/core/test_atomselections.py::TestPropSelection::test_lt[ag0-mass-prop mass < 1.5] PASSED [ 22%] 546s testsuite/MDAnalysisTests/core/test_atomselections.py::TestPropSelection::test_lt[ag0-mass-prop mass <1.5] PASSED [ 22%] 546s testsuite/MDAnalysisTests/core/test_atomselections.py::TestPropSelection::test_lt[ag0-mass-prop mass< 1.5] PASSED [ 22%] 546s testsuite/MDAnalysisTests/core/test_atomselections.py::TestPropSelection::test_lt[ag0-mass-prop mass<1.5] PASSED [ 22%] 546s testsuite/MDAnalysisTests/core/test_atomselections.py::TestPropSelection::test_lt[ag0-charge-prop charge < 1.5] PASSED [ 22%] 546s testsuite/MDAnalysisTests/core/test_atomselections.py::TestPropSelection::test_lt[ag0-charge-prop charge <1.5] PASSED [ 22%] 546s testsuite/MDAnalysisTests/core/test_atomselections.py::TestPropSelection::test_lt[ag0-charge-prop charge< 1.5] PASSED [ 22%] 546s testsuite/MDAnalysisTests/core/test_atomselections.py::TestPropSelection::test_lt[ag0-charge-prop charge<1.5] PASSED [ 22%] 546s testsuite/MDAnalysisTests/core/test_atomselections.py::TestPropSelection::test_lt[ag1-mass-prop mass < 1.5] PASSED [ 22%] 546s testsuite/MDAnalysisTests/core/test_atomselections.py::TestPropSelection::test_lt[ag1-mass-prop mass <1.5] PASSED [ 22%] 546s testsuite/MDAnalysisTests/core/test_atomselections.py::TestPropSelection::test_lt[ag1-mass-prop mass< 1.5] PASSED [ 22%] 546s testsuite/MDAnalysisTests/core/test_atomselections.py::TestPropSelection::test_lt[ag1-mass-prop mass<1.5] PASSED [ 22%] 546s testsuite/MDAnalysisTests/core/test_atomselections.py::TestPropSelection::test_lt[ag1-charge-prop charge < 1.5] PASSED [ 22%] 546s testsuite/MDAnalysisTests/core/test_atomselections.py::TestPropSelection::test_lt[ag1-charge-prop charge <1.5] PASSED [ 22%] 546s testsuite/MDAnalysisTests/core/test_atomselections.py::TestPropSelection::test_lt[ag1-charge-prop charge< 1.5] PASSED [ 22%] 546s testsuite/MDAnalysisTests/core/test_atomselections.py::TestPropSelection::test_lt[ag1-charge-prop charge<1.5] PASSED [ 22%] 546s testsuite/MDAnalysisTests/core/test_atomselections.py::TestPropSelection::test_le[ag0-mass-prop mass <= 1.5] PASSED [ 22%] 546s testsuite/MDAnalysisTests/core/test_atomselections.py::TestPropSelection::test_le[ag0-mass-prop mass <=1.5] PASSED [ 22%] 546s testsuite/MDAnalysisTests/core/test_atomselections.py::TestPropSelection::test_le[ag0-mass-prop mass<= 1.5] PASSED [ 22%] 546s testsuite/MDAnalysisTests/core/test_atomselections.py::TestPropSelection::test_le[ag0-mass-prop mass<=1.5] PASSED [ 22%] 546s testsuite/MDAnalysisTests/core/test_atomselections.py::TestPropSelection::test_le[ag0-charge-prop charge <= 1.5] PASSED [ 22%] 546s testsuite/MDAnalysisTests/core/test_atomselections.py::TestPropSelection::test_le[ag0-charge-prop charge <=1.5] PASSED [ 22%] 546s testsuite/MDAnalysisTests/core/test_atomselections.py::TestPropSelection::test_le[ag0-charge-prop charge<= 1.5] PASSED [ 22%] 546s testsuite/MDAnalysisTests/core/test_atomselections.py::TestPropSelection::test_le[ag0-charge-prop charge<=1.5] PASSED [ 22%] 546s testsuite/MDAnalysisTests/core/test_atomselections.py::TestPropSelection::test_le[ag1-mass-prop mass <= 1.5] PASSED [ 22%] 546s testsuite/MDAnalysisTests/core/test_atomselections.py::TestPropSelection::test_le[ag1-mass-prop mass <=1.5] PASSED [ 22%] 546s testsuite/MDAnalysisTests/core/test_atomselections.py::TestPropSelection::test_le[ag1-mass-prop mass<= 1.5] PASSED [ 22%] 546s testsuite/MDAnalysisTests/core/test_atomselections.py::TestPropSelection::test_le[ag1-mass-prop mass<=1.5] PASSED [ 22%] 546s testsuite/MDAnalysisTests/core/test_atomselections.py::TestPropSelection::test_le[ag1-charge-prop charge <= 1.5] PASSED [ 22%] 546s testsuite/MDAnalysisTests/core/test_atomselections.py::TestPropSelection::test_le[ag1-charge-prop charge <=1.5] PASSED [ 22%] 546s testsuite/MDAnalysisTests/core/test_atomselections.py::TestPropSelection::test_le[ag1-charge-prop charge<= 1.5] PASSED [ 22%] 546s testsuite/MDAnalysisTests/core/test_atomselections.py::TestPropSelection::test_le[ag1-charge-prop charge<=1.5] PASSED [ 22%] 546s testsuite/MDAnalysisTests/core/test_atomselections.py::TestPropSelection::test_gt[ag0-mass-prop mass > 1.5] PASSED [ 22%] 546s testsuite/MDAnalysisTests/core/test_atomselections.py::TestPropSelection::test_gt[ag0-mass-prop mass >1.5] PASSED [ 22%] 546s testsuite/MDAnalysisTests/core/test_atomselections.py::TestPropSelection::test_gt[ag0-mass-prop mass> 1.5] PASSED [ 22%] 546s testsuite/MDAnalysisTests/core/test_atomselections.py::TestPropSelection::test_gt[ag0-mass-prop mass>1.5] PASSED [ 22%] 546s testsuite/MDAnalysisTests/core/test_atomselections.py::TestPropSelection::test_gt[ag0-charge-prop charge > 1.5] PASSED [ 22%] 546s testsuite/MDAnalysisTests/core/test_atomselections.py::TestPropSelection::test_gt[ag0-charge-prop charge >1.5] PASSED [ 22%] 546s testsuite/MDAnalysisTests/core/test_atomselections.py::TestPropSelection::test_gt[ag0-charge-prop charge> 1.5] PASSED [ 22%] 546s testsuite/MDAnalysisTests/core/test_atomselections.py::TestPropSelection::test_gt[ag0-charge-prop charge>1.5] PASSED [ 22%] 546s testsuite/MDAnalysisTests/core/test_atomselections.py::TestPropSelection::test_gt[ag1-mass-prop mass > 1.5] PASSED [ 22%] 546s testsuite/MDAnalysisTests/core/test_atomselections.py::TestPropSelection::test_gt[ag1-mass-prop mass >1.5] PASSED [ 22%] 546s testsuite/MDAnalysisTests/core/test_atomselections.py::TestPropSelection::test_gt[ag1-mass-prop mass> 1.5] PASSED [ 22%] 546s testsuite/MDAnalysisTests/core/test_atomselections.py::TestPropSelection::test_gt[ag1-mass-prop mass>1.5] PASSED [ 22%] 546s testsuite/MDAnalysisTests/core/test_atomselections.py::TestPropSelection::test_gt[ag1-charge-prop charge > 1.5] PASSED [ 22%] 546s testsuite/MDAnalysisTests/core/test_atomselections.py::TestPropSelection::test_gt[ag1-charge-prop charge >1.5] PASSED [ 22%] 546s testsuite/MDAnalysisTests/core/test_atomselections.py::TestPropSelection::test_gt[ag1-charge-prop charge> 1.5] PASSED [ 22%] 546s testsuite/MDAnalysisTests/core/test_atomselections.py::TestPropSelection::test_gt[ag1-charge-prop charge>1.5] PASSED [ 22%] 546s testsuite/MDAnalysisTests/core/test_atomselections.py::TestPropSelection::test_ge[ag0-mass-prop mass >= 1.5] PASSED [ 22%] 546s testsuite/MDAnalysisTests/core/test_atomselections.py::TestPropSelection::test_ge[ag0-mass-prop mass >=1.5] PASSED [ 22%] 546s testsuite/MDAnalysisTests/core/test_atomselections.py::TestPropSelection::test_ge[ag0-mass-prop mass>= 1.5] PASSED [ 22%] 546s testsuite/MDAnalysisTests/core/test_atomselections.py::TestPropSelection::test_ge[ag0-mass-prop mass>=1.5] PASSED [ 22%] 546s testsuite/MDAnalysisTests/core/test_atomselections.py::TestPropSelection::test_ge[ag0-charge-prop charge >= 1.5] PASSED [ 22%] 546s testsuite/MDAnalysisTests/core/test_atomselections.py::TestPropSelection::test_ge[ag0-charge-prop charge >=1.5] PASSED [ 22%] 546s testsuite/MDAnalysisTests/core/test_atomselections.py::TestPropSelection::test_ge[ag0-charge-prop charge>= 1.5] PASSED [ 22%] 546s testsuite/MDAnalysisTests/core/test_atomselections.py::TestPropSelection::test_ge[ag0-charge-prop charge>=1.5] PASSED [ 22%] 546s testsuite/MDAnalysisTests/core/test_atomselections.py::TestPropSelection::test_ge[ag1-mass-prop mass >= 1.5] PASSED [ 22%] 546s testsuite/MDAnalysisTests/core/test_atomselections.py::TestPropSelection::test_ge[ag1-mass-prop mass >=1.5] PASSED [ 22%] 546s testsuite/MDAnalysisTests/core/test_atomselections.py::TestPropSelection::test_ge[ag1-mass-prop mass>= 1.5] PASSED [ 22%] 546s testsuite/MDAnalysisTests/core/test_atomselections.py::TestPropSelection::test_ge[ag1-mass-prop mass>=1.5] PASSED [ 22%] 546s testsuite/MDAnalysisTests/core/test_atomselections.py::TestPropSelection::test_ge[ag1-charge-prop charge >= 1.5] PASSED [ 22%] 546s testsuite/MDAnalysisTests/core/test_atomselections.py::TestPropSelection::test_ge[ag1-charge-prop charge >=1.5] PASSED [ 22%] 546s testsuite/MDAnalysisTests/core/test_atomselections.py::TestPropSelection::test_ge[ag1-charge-prop charge>= 1.5] PASSED [ 22%] 546s testsuite/MDAnalysisTests/core/test_atomselections.py::TestPropSelection::test_ge[ag1-charge-prop charge>=1.5] PASSED [ 22%] 546s testsuite/MDAnalysisTests/core/test_atomselections.py::TestPropSelection::test_eq[ag0-mass-prop mass == 1.5] PASSED [ 22%] 546s testsuite/MDAnalysisTests/core/test_atomselections.py::TestPropSelection::test_eq[ag0-mass-prop mass ==1.5] PASSED [ 22%] 546s testsuite/MDAnalysisTests/core/test_atomselections.py::TestPropSelection::test_eq[ag0-mass-prop mass== 1.5] PASSED [ 22%] 546s testsuite/MDAnalysisTests/core/test_atomselections.py::TestPropSelection::test_eq[ag0-mass-prop mass==1.5] PASSED [ 22%] 546s testsuite/MDAnalysisTests/core/test_atomselections.py::TestPropSelection::test_eq[ag0-charge-prop charge == 1.5] PASSED [ 22%] 546s testsuite/MDAnalysisTests/core/test_atomselections.py::TestPropSelection::test_eq[ag0-charge-prop charge ==1.5] PASSED [ 22%] 546s testsuite/MDAnalysisTests/core/test_atomselections.py::TestPropSelection::test_eq[ag0-charge-prop charge== 1.5] PASSED [ 22%] 546s testsuite/MDAnalysisTests/core/test_atomselections.py::TestPropSelection::test_eq[ag0-charge-prop charge==1.5] PASSED [ 22%] 546s testsuite/MDAnalysisTests/core/test_atomselections.py::TestPropSelection::test_eq[ag1-mass-prop mass == 1.5] PASSED [ 22%] 546s testsuite/MDAnalysisTests/core/test_atomselections.py::TestPropSelection::test_eq[ag1-mass-prop mass ==1.5] PASSED [ 22%] 546s testsuite/MDAnalysisTests/core/test_atomselections.py::TestPropSelection::test_eq[ag1-mass-prop mass== 1.5] PASSED [ 22%] 546s testsuite/MDAnalysisTests/core/test_atomselections.py::TestPropSelection::test_eq[ag1-mass-prop mass==1.5] PASSED [ 22%] 546s testsuite/MDAnalysisTests/core/test_atomselections.py::TestPropSelection::test_eq[ag1-charge-prop charge == 1.5] PASSED [ 22%] 546s testsuite/MDAnalysisTests/core/test_atomselections.py::TestPropSelection::test_eq[ag1-charge-prop charge ==1.5] PASSED [ 22%] 546s testsuite/MDAnalysisTests/core/test_atomselections.py::TestPropSelection::test_eq[ag1-charge-prop charge== 1.5] PASSED [ 22%] 546s testsuite/MDAnalysisTests/core/test_atomselections.py::TestPropSelection::test_eq[ag1-charge-prop charge==1.5] PASSED [ 22%] 546s testsuite/MDAnalysisTests/core/test_atomselections.py::TestPropSelection::test_ne[ag0-mass-prop mass != 1.5] PASSED [ 22%] 546s testsuite/MDAnalysisTests/core/test_atomselections.py::TestPropSelection::test_ne[ag0-mass-prop mass !=1.5] PASSED [ 22%] 546s testsuite/MDAnalysisTests/core/test_atomselections.py::TestPropSelection::test_ne[ag0-mass-prop mass!= 1.5] PASSED [ 22%] 546s testsuite/MDAnalysisTests/core/test_atomselections.py::TestPropSelection::test_ne[ag0-mass-prop mass!=1.5] PASSED [ 22%] 546s testsuite/MDAnalysisTests/core/test_atomselections.py::TestPropSelection::test_ne[ag0-charge-prop charge != 1.5] PASSED [ 22%] 546s testsuite/MDAnalysisTests/core/test_atomselections.py::TestPropSelection::test_ne[ag0-charge-prop charge !=1.5] PASSED [ 22%] 546s testsuite/MDAnalysisTests/core/test_atomselections.py::TestPropSelection::test_ne[ag0-charge-prop charge!= 1.5] PASSED [ 22%] 546s testsuite/MDAnalysisTests/core/test_atomselections.py::TestPropSelection::test_ne[ag0-charge-prop charge!=1.5] PASSED [ 22%] 546s testsuite/MDAnalysisTests/core/test_atomselections.py::TestPropSelection::test_ne[ag1-mass-prop mass != 1.5] PASSED [ 22%] 546s testsuite/MDAnalysisTests/core/test_atomselections.py::TestPropSelection::test_ne[ag1-mass-prop mass !=1.5] PASSED [ 22%] 546s testsuite/MDAnalysisTests/core/test_atomselections.py::TestPropSelection::test_ne[ag1-mass-prop mass!= 1.5] PASSED [ 22%] 546s testsuite/MDAnalysisTests/core/test_atomselections.py::TestPropSelection::test_ne[ag1-mass-prop mass!=1.5] PASSED [ 22%] 546s testsuite/MDAnalysisTests/core/test_atomselections.py::TestPropSelection::test_ne[ag1-charge-prop charge != 1.5] PASSED [ 22%] 546s testsuite/MDAnalysisTests/core/test_atomselections.py::TestPropSelection::test_ne[ag1-charge-prop charge !=1.5] PASSED [ 22%] 546s testsuite/MDAnalysisTests/core/test_atomselections.py::TestPropSelection::test_ne[ag1-charge-prop charge!= 1.5] PASSED [ 22%] 546s testsuite/MDAnalysisTests/core/test_atomselections.py::TestPropSelection::test_ne[ag1-charge-prop charge!=1.5] PASSED [ 22%] 546s testsuite/MDAnalysisTests/core/test_atomselections.py::TestPropSelection::test_flip[ag0-mass-<] PASSED [ 22%] 546s testsuite/MDAnalysisTests/core/test_atomselections.py::TestPropSelection::test_flip[ag0-mass->] PASSED [ 22%] 546s testsuite/MDAnalysisTests/core/test_atomselections.py::TestPropSelection::test_flip[ag0-mass-<=] PASSED [ 23%] 546s testsuite/MDAnalysisTests/core/test_atomselections.py::TestPropSelection::test_flip[ag0-mass->=] PASSED [ 23%] 546s testsuite/MDAnalysisTests/core/test_atomselections.py::TestPropSelection::test_flip[ag0-mass-==] PASSED [ 23%] 546s testsuite/MDAnalysisTests/core/test_atomselections.py::TestPropSelection::test_flip[ag0-mass-!=] PASSED [ 23%] 546s testsuite/MDAnalysisTests/core/test_atomselections.py::TestPropSelection::test_flip[ag0-charge-<] PASSED [ 23%] 546s testsuite/MDAnalysisTests/core/test_atomselections.py::TestPropSelection::test_flip[ag0-charge->] PASSED [ 23%] 546s testsuite/MDAnalysisTests/core/test_atomselections.py::TestPropSelection::test_flip[ag0-charge-<=] PASSED [ 23%] 546s testsuite/MDAnalysisTests/core/test_atomselections.py::TestPropSelection::test_flip[ag0-charge->=] PASSED [ 23%] 546s testsuite/MDAnalysisTests/core/test_atomselections.py::TestPropSelection::test_flip[ag0-charge-==] PASSED [ 23%] 546s testsuite/MDAnalysisTests/core/test_atomselections.py::TestPropSelection::test_flip[ag0-charge-!=] PASSED [ 23%] 546s testsuite/MDAnalysisTests/core/test_atomselections.py::TestPropSelection::test_flip[ag1-mass-<] PASSED [ 23%] 546s testsuite/MDAnalysisTests/core/test_atomselections.py::TestPropSelection::test_flip[ag1-mass->] PASSED [ 23%] 546s testsuite/MDAnalysisTests/core/test_atomselections.py::TestPropSelection::test_flip[ag1-mass-<=] PASSED [ 23%] 546s testsuite/MDAnalysisTests/core/test_atomselections.py::TestPropSelection::test_flip[ag1-mass->=] PASSED [ 23%] 546s testsuite/MDAnalysisTests/core/test_atomselections.py::TestPropSelection::test_flip[ag1-mass-==] PASSED [ 23%] 546s testsuite/MDAnalysisTests/core/test_atomselections.py::TestPropSelection::test_flip[ag1-mass-!=] PASSED [ 23%] 546s testsuite/MDAnalysisTests/core/test_atomselections.py::TestPropSelection::test_flip[ag1-charge-<] PASSED [ 23%] 546s testsuite/MDAnalysisTests/core/test_atomselections.py::TestPropSelection::test_flip[ag1-charge->] PASSED [ 23%] 546s testsuite/MDAnalysisTests/core/test_atomselections.py::TestPropSelection::test_flip[ag1-charge-<=] PASSED [ 23%] 546s testsuite/MDAnalysisTests/core/test_atomselections.py::TestPropSelection::test_flip[ag1-charge->=] PASSED [ 23%] 546s testsuite/MDAnalysisTests/core/test_atomselections.py::TestPropSelection::test_flip[ag1-charge-==] PASSED [ 23%] 546s testsuite/MDAnalysisTests/core/test_atomselections.py::TestPropSelection::test_flip[ag1-charge-!=] PASSED [ 23%] 546s testsuite/MDAnalysisTests/core/test_atomselections.py::TestBondedSelection::test_bonded_1 PASSED [ 23%] 547s testsuite/MDAnalysisTests/core/test_atomselections.py::TestBondedSelection::test_nobonds_warns PASSED [ 23%] 547s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionErrors::test_selection_fail[name and H] PASSED [ 23%] 547s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionErrors::test_selection_fail[name )] PASSED [ 23%] 547s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionErrors::test_selection_fail[resid abcd] PASSED [ 23%] 547s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionErrors::test_selection_fail[resnum 7a7] PASSED [ 23%] 547s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionErrors::test_selection_fail[resid 1-] PASSED [ 23%] 547s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionErrors::test_selection_fail[prop chicken == tasty] PASSED [ 23%] 547s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionErrors::test_selection_fail[prop chicken <= 7.4] PASSED [ 23%] 547s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionErrors::test_selection_fail[prop mass ^^ 12.0] PASSED [ 23%] 547s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionErrors::test_selection_fail[same this as resid 1] PASSED [ 23%] 547s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionErrors::test_selection_fail[same resid resname mass 5.0] PASSED [ 23%] 547s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionErrors::test_selection_fail[name H and] PASSED [ 23%] 547s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionErrors::test_selection_fail[naem H] PASSED [ 23%] 547s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionErrors::test_selection_fail[resid and name C] PASSED [ 23%] 547s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionErrors::test_selection_fail[resnum ] PASSED [ 23%] 547s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionErrors::test_selection_fail[bynum or protein] PASSED [ 23%] 547s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionErrors::test_selection_fail[index or protein] PASSED [ 23%] 547s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionErrors::test_selection_fail[prop mass < 4.0 hello] PASSED [ 23%] 547s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionErrors::test_selection_fail[prop mass > 10. and group this] PASSED [ 23%] 547s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionErrors::test_selection_fail[mass 1.0 to] PASSED [ 23%] 547s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionErrors::test_selection_fail[mass to 3.0] PASSED [ 23%] 547s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionErrors::test_selection_fail[mass 1.0:] PASSED [ 23%] 547s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionErrors::test_selection_fail[mass :3.0] PASSED [ 23%] 547s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionErrors::test_selection_fail[mass 1-] PASSED [ 23%] 547s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionErrors::test_selection_fail[chirality ] PASSED [ 23%] 547s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionErrors::test_selection_fail[formalcharge 0.2] PASSED [ 23%] 547s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionErrors::test_invalid_prop_selection PASSED [ 23%] 547s testsuite/MDAnalysisTests/core/test_atomselections.py::test_segid_and_resid PASSED [ 23%] 547s testsuite/MDAnalysisTests/core/test_atomselections.py::TestImplicitOr::test_string_selections[name NameABA or name NameACA or name NameADA-name NameABA NameACA NameADA] PASSED [ 23%] 547s testsuite/MDAnalysisTests/core/test_atomselections.py::TestImplicitOr::test_string_selections[type TypeE or type TypeD or type TypeB-type TypeE TypeD TypeB] PASSED [ 23%] 547s testsuite/MDAnalysisTests/core/test_atomselections.py::TestImplicitOr::test_string_selections[resname RsC or resname RsY-resname RsC RsY] PASSED [ 23%] 547s testsuite/MDAnalysisTests/core/test_atomselections.py::TestImplicitOr::test_string_selections[name NameAB* or name NameACC-name NameAB* NameACC] PASSED [ 23%] 547s testsuite/MDAnalysisTests/core/test_atomselections.py::TestImplicitOr::test_string_selections[segid SegA or segid SegC-segid SegA SegC] PASSED [ 23%] 547s testsuite/MDAnalysisTests/core/test_atomselections.py::TestImplicitOr::test_string_selections[(name NameABC or name NameABB) and (resname RsD or resname RsF)-name NameABC NameABB and resname RsD RsF] PASSED [ 23%] 547s testsuite/MDAnalysisTests/core/test_atomselections.py::TestImplicitOr::test_range_selections[{typ} 1 or {typ} 2-{typ} 1 2-resid] PASSED [ 23%] 547s testsuite/MDAnalysisTests/core/test_atomselections.py::TestImplicitOr::test_range_selections[{typ} 1 or {typ} 2-{typ} 1 2-resnum] PASSED [ 23%] 547s testsuite/MDAnalysisTests/core/test_atomselections.py::TestImplicitOr::test_range_selections[{typ} 1 or {typ} 2-{typ} 1 2-bynum] PASSED [ 23%] 547s testsuite/MDAnalysisTests/core/test_atomselections.py::TestImplicitOr::test_range_selections[{typ} 1 or {typ} 2-{typ} 1 2-index] PASSED [ 23%] 547s testsuite/MDAnalysisTests/core/test_atomselections.py::TestImplicitOr::test_range_selections[{typ} 1:10 or {typ} 22-{typ} 1:10 22-resid] PASSED [ 23%] 547s testsuite/MDAnalysisTests/core/test_atomselections.py::TestImplicitOr::test_range_selections[{typ} 1:10 or {typ} 22-{typ} 1:10 22-resnum] PASSED [ 23%] 547s testsuite/MDAnalysisTests/core/test_atomselections.py::TestImplicitOr::test_range_selections[{typ} 1:10 or {typ} 22-{typ} 1:10 22-bynum] PASSED [ 23%] 547s testsuite/MDAnalysisTests/core/test_atomselections.py::TestImplicitOr::test_range_selections[{typ} 1:10 or {typ} 22-{typ} 1:10 22-index] PASSED [ 23%] 547s testsuite/MDAnalysisTests/core/test_atomselections.py::TestImplicitOr::test_range_selections[{typ} 1:10 or {typ} 20:30-{typ} 1:10 20:30-resid] PASSED [ 23%] 547s testsuite/MDAnalysisTests/core/test_atomselections.py::TestImplicitOr::test_range_selections[{typ} 1:10 or {typ} 20:30-{typ} 1:10 20:30-resnum] PASSED [ 23%] 547s testsuite/MDAnalysisTests/core/test_atomselections.py::TestImplicitOr::test_range_selections[{typ} 1:10 or {typ} 20:30-{typ} 1:10 20:30-bynum] PASSED [ 23%] 547s testsuite/MDAnalysisTests/core/test_atomselections.py::TestImplicitOr::test_range_selections[{typ} 1:10 or {typ} 20:30-{typ} 1:10 20:30-index] PASSED [ 23%] 547s testsuite/MDAnalysisTests/core/test_atomselections.py::TestImplicitOr::test_range_selections[{typ} 1-5 or {typ} 7-{typ} 1-5 7-resid] PASSED [ 23%] 547s testsuite/MDAnalysisTests/core/test_atomselections.py::TestImplicitOr::test_range_selections[{typ} 1-5 or {typ} 7-{typ} 1-5 7-resnum] PASSED [ 23%] 547s testsuite/MDAnalysisTests/core/test_atomselections.py::TestImplicitOr::test_range_selections[{typ} 1-5 or {typ} 7-{typ} 1-5 7-bynum] PASSED [ 23%] 547s testsuite/MDAnalysisTests/core/test_atomselections.py::TestImplicitOr::test_range_selections[{typ} 1-5 or {typ} 7-{typ} 1-5 7-index] PASSED [ 23%] 547s testsuite/MDAnalysisTests/core/test_atomselections.py::TestImplicitOr::test_range_selections[{typ} 1-5 or {typ} 7:10 or {typ} 12-{typ} 1-5 7:10 12-resid] PASSED [ 23%] 547s testsuite/MDAnalysisTests/core/test_atomselections.py::TestImplicitOr::test_range_selections[{typ} 1-5 or {typ} 7:10 or {typ} 12-{typ} 1-5 7:10 12-resnum] PASSED [ 23%] 547s testsuite/MDAnalysisTests/core/test_atomselections.py::TestImplicitOr::test_range_selections[{typ} 1-5 or {typ} 7:10 or {typ} 12-{typ} 1-5 7:10 12-bynum] PASSED [ 23%] 547s testsuite/MDAnalysisTests/core/test_atomselections.py::TestImplicitOr::test_range_selections[{typ} 1-5 or {typ} 7:10 or {typ} 12-{typ} 1-5 7:10 12-index] PASSED [ 23%] 547s testsuite/MDAnalysisTests/core/test_atomselections.py::TestImplicitOr::test_range_selections[{typ} 1 or {typ} 3 or {typ} 5:10-{typ} 1 3 5:10-resid] PASSED [ 23%] 547s testsuite/MDAnalysisTests/core/test_atomselections.py::TestImplicitOr::test_range_selections[{typ} 1 or {typ} 3 or {typ} 5:10-{typ} 1 3 5:10-resnum] PASSED [ 23%] 547s testsuite/MDAnalysisTests/core/test_atomselections.py::TestImplicitOr::test_range_selections[{typ} 1 or {typ} 3 or {typ} 5:10-{typ} 1 3 5:10-bynum] PASSED [ 23%] 547s testsuite/MDAnalysisTests/core/test_atomselections.py::TestImplicitOr::test_range_selections[{typ} 1 or {typ} 3 or {typ} 5:10-{typ} 1 3 5:10-index] PASSED [ 23%] 547s testsuite/MDAnalysisTests/core/test_atomselections.py::TestICodeSelection::test_select_icode PASSED [ 23%] 547s testsuite/MDAnalysisTests/core/test_atomselections.py::TestICodeSelection::test_select_resid_implicit_icode PASSED [ 23%] 547s testsuite/MDAnalysisTests/core/test_atomselections.py::TestICodeSelection::test_select_icode_range_1 PASSED [ 23%] 547s testsuite/MDAnalysisTests/core/test_atomselections.py::TestICodeSelection::test_select_icode_range_2 PASSED [ 23%] 547s testsuite/MDAnalysisTests/core/test_atomselections.py::TestICodeSelection::test_select_icode_range_3 PASSED [ 23%] 547s testsuite/MDAnalysisTests/core/test_atomselections.py::TestICodeSelection::test_select_icode_range_4 PASSED [ 23%] 547s testsuite/MDAnalysisTests/core/test_atomselections.py::TestICodeSelection::test_select_icode_range_5 PASSED [ 23%] 547s testsuite/MDAnalysisTests/core/test_atomselections.py::TestICodeSelection::test_missing_icodes_VE PASSED [ 23%] 547s testsuite/MDAnalysisTests/core/test_atomselections.py::TestICodeSelection::test_missing_icodes_range_VE PASSED [ 23%] 547s testsuite/MDAnalysisTests/core/test_atomselections.py::test_similarity_selection_icodes[same residue as -11] PASSED [ 23%] 547s testsuite/MDAnalysisTests/core/test_atomselections.py::test_similarity_selection_icodes[same resid as-72] PASSED [ 23%] 548s testsuite/MDAnalysisTests/core/test_atomselections.py::test_similarity_selection_icodes[byres-11] PASSED [ 23%] 548s testsuite/MDAnalysisTests/core/test_atomselections.py::test_selections_on_empty_group[all] PASSED [ 23%] 548s testsuite/MDAnalysisTests/core/test_atomselections.py::test_selections_on_empty_group[protein] PASSED [ 23%] 548s testsuite/MDAnalysisTests/core/test_atomselections.py::test_selections_on_empty_group[backbone] PASSED [ 23%] 548s testsuite/MDAnalysisTests/core/test_atomselections.py::test_selections_on_empty_group[nucleic] PASSED [ 23%] 548s testsuite/MDAnalysisTests/core/test_atomselections.py::test_selections_on_empty_group[nucleicbackbone] PASSED [ 23%] 548s testsuite/MDAnalysisTests/core/test_atomselections.py::test_selections_on_empty_group[name O] PASSED [ 23%] 548s testsuite/MDAnalysisTests/core/test_atomselections.py::test_selections_on_empty_group[name N*] PASSED [ 23%] 548s testsuite/MDAnalysisTests/core/test_atomselections.py::test_selections_on_empty_group[resname stuff] PASSED [ 23%] 548s testsuite/MDAnalysisTests/core/test_atomselections.py::test_selections_on_empty_group[resname ALA] PASSED [ 23%] 548s testsuite/MDAnalysisTests/core/test_atomselections.py::test_selections_on_empty_group[type O] PASSED [ 23%] 548s testsuite/MDAnalysisTests/core/test_atomselections.py::test_selections_on_empty_group[index 0] PASSED [ 23%] 548s testsuite/MDAnalysisTests/core/test_atomselections.py::test_selections_on_empty_group[index 1] PASSED [ 23%] 548s testsuite/MDAnalysisTests/core/test_atomselections.py::test_selections_on_empty_group[bynum 1-10] PASSED [ 23%] 548s testsuite/MDAnalysisTests/core/test_atomselections.py::test_selections_on_empty_group[segid SYSTEM] PASSED [ 23%] 548s testsuite/MDAnalysisTests/core/test_atomselections.py::test_selections_on_empty_group[resid 163] PASSED [ 23%] 548s testsuite/MDAnalysisTests/core/test_atomselections.py::test_selections_on_empty_group[resid 1-10] PASSED [ 23%] 548s testsuite/MDAnalysisTests/core/test_atomselections.py::test_selections_on_empty_group[resnum 2] PASSED [ 23%] 548s testsuite/MDAnalysisTests/core/test_atomselections.py::test_selections_on_empty_group[around 10 resid 1] PASSED [ 23%] 548s testsuite/MDAnalysisTests/core/test_atomselections.py::test_selections_on_empty_group[point 0 0 0 10] PASSED [ 23%] 548s testsuite/MDAnalysisTests/core/test_atomselections.py::test_selections_on_empty_group[sphzone 10 resid 1] PASSED [ 23%] 548s testsuite/MDAnalysisTests/core/test_atomselections.py::test_selections_on_empty_group[sphlayer 0 10 index 1] PASSED [ 23%] 548s testsuite/MDAnalysisTests/core/test_atomselections.py::test_selections_on_empty_group[cyzone 15 4 -8 index 0] PASSED [ 23%] 548s testsuite/MDAnalysisTests/core/test_atomselections.py::test_selections_on_empty_group[cylayer 5 10 10 -8 index 1] PASSED [ 23%] 548s testsuite/MDAnalysisTests/core/test_atomselections.py::test_selections_on_empty_group[prop abs z <= 100] PASSED [ 23%] 548s testsuite/MDAnalysisTests/core/test_atomselections.py::test_selections_on_empty_group[byres index 0] PASSED [ 23%] 548s testsuite/MDAnalysisTests/core/test_atomselections.py::test_selections_on_empty_group[same resid as index 0] PASSED [ 23%] 548s testsuite/MDAnalysisTests/core/test_atomselections.py::test_empty_yet_global PASSED [ 23%] 548s testsuite/MDAnalysisTests/core/test_atomselections.py::test_arbitrary_atom_group_raises_error PASSED [ 23%] 548s testsuite/MDAnalysisTests/core/test_atomselections.py::test_empty_sel PASSED [ 23%] 548s testsuite/MDAnalysisTests/core/test_atomselections.py::test_record_type_sel PASSED [ 23%] 548s testsuite/MDAnalysisTests/core/test_atomselections.py::test_element_sel PASSED [ 23%] 548s testsuite/MDAnalysisTests/core/test_atomselections.py::test_chain_sel PASSED [ 23%] 548s testsuite/MDAnalysisTests/core/test_atomselections.py::test_mass_sel[mass 0.8 to 1.2-23844-selkwargs0] PASSED [ 23%] 548s testsuite/MDAnalysisTests/core/test_atomselections.py::test_mass_sel[mass 8e-1 to 1200e-3-23844-selkwargs1] PASSED [ 23%] 548s testsuite/MDAnalysisTests/core/test_atomselections.py::test_mass_sel[mass -5--3-2-selkwargs2] PASSED [ 23%] 548s testsuite/MDAnalysisTests/core/test_atomselections.py::test_mass_sel[mass -3 : -5-0-selkwargs3] PASSED [ 23%] 549s testsuite/MDAnalysisTests/core/test_atomselections.py::test_mass_sel[mass -5 --3-2-selkwargs4] PASSED [ 23%] 549s testsuite/MDAnalysisTests/core/test_atomselections.py::test_mass_sel[mass -5- -3-2-selkwargs5] PASSED [ 23%] 549s testsuite/MDAnalysisTests/core/test_atomselections.py::test_mass_sel[mass -5 - -3-2-selkwargs6] PASSED [ 23%] 550s testsuite/MDAnalysisTests/core/test_atomselections.py::test_mass_sel[mass -10:3-34945-selkwargs7] PASSED [ 23%] 550s testsuite/MDAnalysisTests/core/test_atomselections.py::test_mass_sel[mass -10 :3-34945-selkwargs8] PASSED [ 23%] 550s testsuite/MDAnalysisTests/core/test_atomselections.py::test_mass_sel[mass -10: 3-34945-selkwargs9] PASSED [ 23%] 550s testsuite/MDAnalysisTests/core/test_atomselections.py::test_mass_sel[mass -10 : 3-34945-selkwargs10] PASSED [ 23%] 551s testsuite/MDAnalysisTests/core/test_atomselections.py::test_mass_sel[mass -10 -3-0-selkwargs11] PASSED [ 23%] 551s testsuite/MDAnalysisTests/core/test_atomselections.py::test_mass_sel[mass 0.3-5-selkwargs12] PASSED [ 23%] 551s testsuite/MDAnalysisTests/core/test_atomselections.py::test_mass_sel[mass 0.3-5-selkwargs13] PASSED [ 23%] 551s testsuite/MDAnalysisTests/core/test_atomselections.py::test_mass_sel[mass 0.3 - 0.30000000000000004-10-selkwargs14] PASSED [ 23%] 552s testsuite/MDAnalysisTests/core/test_atomselections.py::test_mass_sel[mass 0.30000000000000004-5-selkwargs15] PASSED [ 23%] 552s testsuite/MDAnalysisTests/core/test_atomselections.py::test_mass_sel[mass 0.3 0.30000000000000001-5-selkwargs16] PASSED [ 23%] 552s testsuite/MDAnalysisTests/core/test_atomselections.py::test_mass_sel[mass 0.3-10-selkwargs17] PASSED [ 23%] 553s testsuite/MDAnalysisTests/core/test_atomselections.py::test_mass_sel[mass 0.30000000000000004-10-selkwargs18] PASSED [ 23%] 553s testsuite/MDAnalysisTests/core/test_atomselections.py::test_mass_sel[mass 0.3 0.30000000000000001-10-selkwargs19] PASSED [ 23%] 554s testsuite/MDAnalysisTests/core/test_atomselections.py::test_mass_sel[prop mass == 0.3-10-selkwargs20] PASSED [ 23%] 554s testsuite/MDAnalysisTests/core/test_atomselections.py::test_mass_sel[prop mass == 0.30000000000000004-10-selkwargs21] PASSED [ 23%] 554s testsuite/MDAnalysisTests/core/test_atomselections.py::test_mass_sel[prop mass == 0.30000000000000004-5-selkwargs22] PASSED [ 23%] 554s testsuite/MDAnalysisTests/core/test_atomselections.py::test_mass_sel_warning PASSED [ 23%] 555s testsuite/MDAnalysisTests/core/test_atomselections.py::test_int_sel[resnum -10 to 3-13] PASSED [ 23%] 555s testsuite/MDAnalysisTests/core/test_atomselections.py::test_int_sel[resnum -5--3-3] PASSED [ 23%] 555s testsuite/MDAnalysisTests/core/test_atomselections.py::test_int_sel[resnum -3 : -5-0] PASSED [ 23%] 555s testsuite/MDAnalysisTests/core/test_atomselections.py::test_negative_resid PASSED [ 23%] 555s testsuite/MDAnalysisTests/core/test_atomselections.py::test_bool_sel[aromaticity-5] SKIPPED [ 23%] 555s testsuite/MDAnalysisTests/core/test_atomselections.py::test_bool_sel[aromaticity true-5] SKIPPED [ 23%] 555s testsuite/MDAnalysisTests/core/test_atomselections.py::test_bool_sel[not aromaticity-15] SKIPPED [ 23%] 556s testsuite/MDAnalysisTests/core/test_atomselections.py::test_bool_sel[aromaticity False-15] SKIPPED [ 23%] 556s testsuite/MDAnalysisTests/core/test_atomselections.py::test_bool_sel_error SKIPPED [ 23%] 556s testsuite/MDAnalysisTests/core/test_atomselections.py::test_error_selection_for_strange_dtype PASSED [ 23%] 556s testsuite/MDAnalysisTests/core/test_atomselections.py::test_default_selection_on_ordered_unique_group[name N-ix0] PASSED [ 23%] 556s testsuite/MDAnalysisTests/core/test_atomselections.py::test_default_selection_on_ordered_unique_group[resname GLU-ix1] PASSED [ 23%] 556s testsuite/MDAnalysisTests/core/test_atomselections.py::test_unique_selection_on_ordered_unique_group[name N-True-ix0] PASSED [ 23%] 556s testsuite/MDAnalysisTests/core/test_atomselections.py::test_unique_selection_on_ordered_unique_group[name N-False-ix1] PASSED [ 23%] 556s testsuite/MDAnalysisTests/core/test_atomselections.py::test_unique_selection_on_ordered_unique_group[resname GLU-True-ix2] PASSED [ 23%] 556s testsuite/MDAnalysisTests/core/test_atomselections.py::test_unique_selection_on_ordered_unique_group[resname GLU-False-ix3] PASSED [ 23%] 556s testsuite/MDAnalysisTests/core/test_atomselections.py::test_unique_selection_on_ordered_group[name N-True-ix0] PASSED [ 23%] 556s testsuite/MDAnalysisTests/core/test_atomselections.py::test_unique_selection_on_ordered_group[name N-False-ix1] PASSED [ 23%] 556s testsuite/MDAnalysisTests/core/test_atomselections.py::test_unique_selection_on_ordered_group[resname GLU-True-ix2] PASSED [ 23%] 556s testsuite/MDAnalysisTests/core/test_atomselections.py::test_unique_selection_on_ordered_group[resname GLU-False-ix3] PASSED [ 23%] 556s testsuite/MDAnalysisTests/core/test_atomselections.py::test_chirality[C[C@@H](C(=O)O)N-S] SKIPPED [ 23%] 556s testsuite/MDAnalysisTests/core/test_atomselections.py::test_chirality[C[C@H](C(=O)O)N-R] SKIPPED [ 23%] 556s testsuite/MDAnalysisTests/core/test_atomselections.py::test_chirality_selection[R-1] SKIPPED [ 23%] 556s testsuite/MDAnalysisTests/core/test_atomselections.py::test_chirality_selection[S-1] SKIPPED [ 23%] 556s testsuite/MDAnalysisTests/core/test_atomselections.py::test_chirality_selection[R S-2] SKIPPED [ 23%] 556s testsuite/MDAnalysisTests/core/test_atomselections.py::test_chirality_selection[S R-2] SKIPPED [ 23%] 556s testsuite/MDAnalysisTests/core/test_atomselections.py::test_formal_charge_selection[1-1-NH2] PASSED [ 23%] 556s testsuite/MDAnalysisTests/core/test_atomselections.py::test_formal_charge_selection[-1-1-OD2] PASSED [ 23%] 556s testsuite/MDAnalysisTests/core/test_atomselections.py::test_formal_charge_selection[0-34-N] PASSED [ 23%] 556s testsuite/MDAnalysisTests/core/test_atomselections.py::test_formal_charge_selection[-1 1-2-OD2] PASSED [ 23%] 556s testsuite/MDAnalysisTests/core/test_copying.py::TestTransTableCopy::test_size PASSED [ 23%] 556s testsuite/MDAnalysisTests/core/test_copying.py::TestTransTableCopy::test_size_independent PASSED [ 23%] 556s testsuite/MDAnalysisTests/core/test_copying.py::TestTransTableCopy::test_AR[_AR] PASSED [ 23%] 556s testsuite/MDAnalysisTests/core/test_copying.py::TestTransTableCopy::test_AR[RA] PASSED [ 23%] 556s testsuite/MDAnalysisTests/core/test_copying.py::TestTransTableCopy::test_AR[_RS] PASSED [ 23%] 556s testsuite/MDAnalysisTests/core/test_copying.py::TestTransTableCopy::test_AR[SR] PASSED [ 24%] 556s testsuite/MDAnalysisTests/core/test_copying.py::TestTransTableCopy::test_AR_independent[_AR] PASSED [ 24%] 556s testsuite/MDAnalysisTests/core/test_copying.py::TestTransTableCopy::test_AR_independent[RA] PASSED [ 24%] 556s testsuite/MDAnalysisTests/core/test_copying.py::TestTransTableCopy::test_AR_independent[_RS] PASSED [ 24%] 556s testsuite/MDAnalysisTests/core/test_copying.py::TestTransTableCopy::test_AR_independent[SR] PASSED [ 24%] 556s testsuite/MDAnalysisTests/core/test_copying.py::TestTransTableCopy::test_move_atom PASSED [ 24%] 556s testsuite/MDAnalysisTests/core/test_copying.py::TestTransTableCopy::test_move_residue PASSED [ 24%] 556s testsuite/MDAnalysisTests/core/test_copying.py::test_copy_attr[refTA0] PASSED [ 24%] 556s testsuite/MDAnalysisTests/core/test_copying.py::test_copy_attr[refTA1] PASSED [ 24%] 556s testsuite/MDAnalysisTests/core/test_copying.py::test_copy_attr[refTA2] PASSED [ 24%] 556s testsuite/MDAnalysisTests/core/test_copying.py::test_copy_attr[refTA3] PASSED [ 24%] 556s testsuite/MDAnalysisTests/core/test_copying.py::test_copy_attr[refTA4] PASSED [ 24%] 556s testsuite/MDAnalysisTests/core/test_copying.py::test_copy_attr[refTA5] PASSED [ 24%] 556s testsuite/MDAnalysisTests/core/test_copying.py::test_copy_attr[refTA6] PASSED [ 24%] 556s testsuite/MDAnalysisTests/core/test_copying.py::test_copy_attr[refTA7] PASSED [ 24%] 556s testsuite/MDAnalysisTests/core/test_copying.py::test_copy_attr[refTA8] PASSED [ 24%] 556s testsuite/MDAnalysisTests/core/test_copying.py::test_copy_attr[refTA9] PASSED [ 24%] 556s testsuite/MDAnalysisTests/core/test_copying.py::test_copy_attr[refTA10] PASSED [ 24%] 556s testsuite/MDAnalysisTests/core/test_copying.py::test_copy_attr[refTA11] PASSED [ 24%] 556s testsuite/MDAnalysisTests/core/test_copying.py::test_copy_attr[refTA12] PASSED [ 24%] 556s testsuite/MDAnalysisTests/core/test_copying.py::test_copy_attr[refTA13] PASSED [ 24%] 556s testsuite/MDAnalysisTests/core/test_copying.py::test_copy_attr[refTA14] PASSED [ 24%] 556s testsuite/MDAnalysisTests/core/test_copying.py::test_copy_attr[refTA15] PASSED [ 24%] 556s testsuite/MDAnalysisTests/core/test_copying.py::test_copy_attr[refTA16] PASSED [ 24%] 556s testsuite/MDAnalysisTests/core/test_copying.py::test_copy_attr[refTA17] PASSED [ 24%] 556s testsuite/MDAnalysisTests/core/test_copying.py::test_copy_attr[refTA18] PASSED [ 24%] 556s testsuite/MDAnalysisTests/core/test_copying.py::test_copy_attr[refTA19] PASSED [ 24%] 556s testsuite/MDAnalysisTests/core/test_copying.py::test_copy_attr[refTA20] PASSED [ 24%] 556s testsuite/MDAnalysisTests/core/test_copying.py::test_topology_copy_n_attrs PASSED [ 24%] 556s testsuite/MDAnalysisTests/core/test_copying.py::test_topology_copy_unique_attrs[names] PASSED [ 24%] 556s testsuite/MDAnalysisTests/core/test_copying.py::test_topology_copy_unique_attrs[masses] PASSED [ 24%] 556s testsuite/MDAnalysisTests/core/test_copying.py::test_topology_copy_unique_attrs[resids] PASSED [ 24%] 556s testsuite/MDAnalysisTests/core/test_copying.py::test_topology_copy_unique_attrs[bonds] PASSED [ 24%] 556s testsuite/MDAnalysisTests/core/test_copying.py::test_topology_copy_unique_attrs[tt] PASSED [ 24%] 556s testsuite/MDAnalysisTests/core/test_copying.py::TestCopyUniverse::test_universe_copy PASSED [ 24%] 556s testsuite/MDAnalysisTests/core/test_copying.py::TestCopyUniverse::test_positions PASSED [ 24%] 556s testsuite/MDAnalysisTests/core/test_copying.py::TestCopyUniverse::test_change_positions PASSED [ 24%] 556s testsuite/MDAnalysisTests/core/test_copying.py::TestCopyUniverse::test_topology PASSED [ 24%] 556s testsuite/MDAnalysisTests/core/test_copying.py::TestCopyUniverse::test_change_topology PASSED [ 24%] 556s testsuite/MDAnalysisTests/core/test_copying.py::test_pdb_copy PASSED [ 24%] 556s testsuite/MDAnalysisTests/core/test_fragments.py::TestFragments::test_total_frags[u0] PASSED [ 24%] 556s testsuite/MDAnalysisTests/core/test_fragments.py::TestFragments::test_total_frags[u1] PASSED [ 24%] 556s testsuite/MDAnalysisTests/core/test_fragments.py::TestFragments::test_frag_external_ordering[u0] PASSED [ 24%] 556s testsuite/MDAnalysisTests/core/test_fragments.py::TestFragments::test_frag_external_ordering[u1] PASSED [ 24%] 556s testsuite/MDAnalysisTests/core/test_fragments.py::TestFragments::test_frag_internal_ordering[u0] PASSED [ 24%] 556s testsuite/MDAnalysisTests/core/test_fragments.py::TestFragments::test_frag_internal_ordering[u1] PASSED [ 24%] 556s testsuite/MDAnalysisTests/core/test_fragments.py::TestFragments::test_atom_access[u0] PASSED [ 24%] 556s testsuite/MDAnalysisTests/core/test_fragments.py::TestFragments::test_atom_access[u1] PASSED [ 24%] 556s testsuite/MDAnalysisTests/core/test_fragments.py::TestFragments::test_atomgroup_access[u0] PASSED [ 24%] 556s testsuite/MDAnalysisTests/core/test_fragments.py::TestFragments::test_atomgroup_access[u1] PASSED [ 24%] 556s testsuite/MDAnalysisTests/core/test_fragments.py::TestFragments::test_empty_atomgroup_access PASSED [ 24%] 556s testsuite/MDAnalysisTests/core/test_fragments.py::TestFragments::test_atomgroup_fragments_nobonds_NDE PASSED [ 24%] 556s testsuite/MDAnalysisTests/core/test_fragments.py::TestFragments::test_atom_fragment_nobonds_NDE PASSED [ 24%] 556s testsuite/MDAnalysisTests/core/test_fragments.py::TestFragments::test_atomgroup_fragment_cache_invalidation_bond_making PASSED [ 24%] 556s testsuite/MDAnalysisTests/core/test_fragments.py::TestFragments::test_atomgroup_fragment_cache_invalidation_bond_breaking PASSED [ 24%] 557s testsuite/MDAnalysisTests/core/test_fragments.py::test_tpr_fragments PASSED [ 24%] 557s testsuite/MDAnalysisTests/core/test_group_traj_access.py::TestAtomGroupTrajAccess::test_atomgroup_positions_access[True-False-False] PASSED [ 24%] 557s testsuite/MDAnalysisTests/core/test_group_traj_access.py::TestAtomGroupTrajAccess::test_atomgroup_positions_access[True-True-False] PASSED [ 24%] 557s testsuite/MDAnalysisTests/core/test_group_traj_access.py::TestAtomGroupTrajAccess::test_atomgroup_positions_access[True-False-True] PASSED [ 24%] 557s testsuite/MDAnalysisTests/core/test_group_traj_access.py::TestAtomGroupTrajAccess::test_atomgroup_positions_access[True-True-True] PASSED [ 24%] 557s testsuite/MDAnalysisTests/core/test_group_traj_access.py::TestAtomGroupTrajAccess::test_atomgroup_velocities_access[True-False-False] PASSED [ 24%] 557s testsuite/MDAnalysisTests/core/test_group_traj_access.py::TestAtomGroupTrajAccess::test_atomgroup_velocities_access[True-True-False] PASSED [ 24%] 557s testsuite/MDAnalysisTests/core/test_group_traj_access.py::TestAtomGroupTrajAccess::test_atomgroup_velocities_access[True-False-True] PASSED [ 24%] 557s testsuite/MDAnalysisTests/core/test_group_traj_access.py::TestAtomGroupTrajAccess::test_atomgroup_velocities_access[True-True-True] PASSED [ 24%] 557s testsuite/MDAnalysisTests/core/test_group_traj_access.py::TestAtomGroupTrajAccess::test_atomgroup_forces_access[True-False-False] PASSED [ 24%] 557s testsuite/MDAnalysisTests/core/test_group_traj_access.py::TestAtomGroupTrajAccess::test_atomgroup_forces_access[True-True-False] PASSED [ 24%] 557s testsuite/MDAnalysisTests/core/test_group_traj_access.py::TestAtomGroupTrajAccess::test_atomgroup_forces_access[True-False-True] PASSED [ 24%] 557s testsuite/MDAnalysisTests/core/test_group_traj_access.py::TestAtomGroupTrajAccess::test_atomgroup_forces_access[True-True-True] PASSED [ 24%] 557s testsuite/MDAnalysisTests/core/test_group_traj_access.py::TestAtomGroupTrajAccess::test_atom_position_access[True-False-False] PASSED [ 24%] 557s testsuite/MDAnalysisTests/core/test_group_traj_access.py::TestAtomGroupTrajAccess::test_atom_position_access[True-True-False] PASSED [ 24%] 557s testsuite/MDAnalysisTests/core/test_group_traj_access.py::TestAtomGroupTrajAccess::test_atom_position_access[True-False-True] PASSED [ 24%] 557s testsuite/MDAnalysisTests/core/test_group_traj_access.py::TestAtomGroupTrajAccess::test_atom_position_access[True-True-True] PASSED [ 24%] 557s testsuite/MDAnalysisTests/core/test_group_traj_access.py::TestAtomGroupTrajAccess::test_atom_velocity_access[True-False-False] PASSED [ 24%] 557s testsuite/MDAnalysisTests/core/test_group_traj_access.py::TestAtomGroupTrajAccess::test_atom_velocity_access[True-True-False] PASSED [ 24%] 557s testsuite/MDAnalysisTests/core/test_group_traj_access.py::TestAtomGroupTrajAccess::test_atom_velocity_access[True-False-True] PASSED [ 24%] 557s testsuite/MDAnalysisTests/core/test_group_traj_access.py::TestAtomGroupTrajAccess::test_atom_velocity_access[True-True-True] PASSED [ 24%] 557s testsuite/MDAnalysisTests/core/test_group_traj_access.py::TestAtomGroupTrajAccess::test_atom_force_access[True-False-False] PASSED [ 24%] 557s testsuite/MDAnalysisTests/core/test_group_traj_access.py::TestAtomGroupTrajAccess::test_atom_force_access[True-True-False] PASSED [ 24%] 557s testsuite/MDAnalysisTests/core/test_group_traj_access.py::TestAtomGroupTrajAccess::test_atom_force_access[True-False-True] PASSED [ 24%] 557s testsuite/MDAnalysisTests/core/test_group_traj_access.py::TestAtomGroupTrajAccess::test_atom_force_access[True-True-True] PASSED [ 24%] 557s testsuite/MDAnalysisTests/core/test_group_traj_access.py::TestAtomGroupTrajAccess::test_atomgroup_positions_setting[True-False-False] PASSED [ 24%] 557s testsuite/MDAnalysisTests/core/test_group_traj_access.py::TestAtomGroupTrajAccess::test_atomgroup_positions_setting[True-True-False] PASSED [ 24%] 558s testsuite/MDAnalysisTests/core/test_group_traj_access.py::TestAtomGroupTrajAccess::test_atomgroup_positions_setting[True-False-True] PASSED [ 24%] 558s testsuite/MDAnalysisTests/core/test_group_traj_access.py::TestAtomGroupTrajAccess::test_atomgroup_positions_setting[True-True-True] PASSED [ 24%] 558s testsuite/MDAnalysisTests/core/test_group_traj_access.py::TestAtomGroupTrajAccess::test_atomgroup_velocities_setting[True-False-False] PASSED [ 24%] 558s testsuite/MDAnalysisTests/core/test_group_traj_access.py::TestAtomGroupTrajAccess::test_atomgroup_velocities_setting[True-True-False] PASSED [ 24%] 558s testsuite/MDAnalysisTests/core/test_group_traj_access.py::TestAtomGroupTrajAccess::test_atomgroup_velocities_setting[True-False-True] PASSED [ 24%] 558s testsuite/MDAnalysisTests/core/test_group_traj_access.py::TestAtomGroupTrajAccess::test_atomgroup_velocities_setting[True-True-True] PASSED [ 24%] 558s testsuite/MDAnalysisTests/core/test_group_traj_access.py::TestAtomGroupTrajAccess::test_atomgroup_forces_setting[True-False-False] PASSED [ 24%] 558s testsuite/MDAnalysisTests/core/test_group_traj_access.py::TestAtomGroupTrajAccess::test_atomgroup_forces_setting[True-True-False] PASSED [ 24%] 558s testsuite/MDAnalysisTests/core/test_group_traj_access.py::TestAtomGroupTrajAccess::test_atomgroup_forces_setting[True-False-True] PASSED [ 24%] 558s testsuite/MDAnalysisTests/core/test_group_traj_access.py::TestAtomGroupTrajAccess::test_atomgroup_forces_setting[True-True-True] PASSED [ 24%] 558s testsuite/MDAnalysisTests/core/test_group_traj_access.py::TestAtomGroupTrajAccess::test_atom_position_setting[True-False-False] PASSED [ 24%] 558s testsuite/MDAnalysisTests/core/test_group_traj_access.py::TestAtomGroupTrajAccess::test_atom_position_setting[True-True-False] PASSED [ 24%] 558s testsuite/MDAnalysisTests/core/test_group_traj_access.py::TestAtomGroupTrajAccess::test_atom_position_setting[True-False-True] PASSED [ 24%] 558s testsuite/MDAnalysisTests/core/test_group_traj_access.py::TestAtomGroupTrajAccess::test_atom_position_setting[True-True-True] PASSED [ 24%] 558s testsuite/MDAnalysisTests/core/test_group_traj_access.py::TestAtomGroupTrajAccess::test_atom_velocity_setting[True-False-False] PASSED [ 24%] 558s testsuite/MDAnalysisTests/core/test_group_traj_access.py::TestAtomGroupTrajAccess::test_atom_velocity_setting[True-True-False] PASSED [ 24%] 558s testsuite/MDAnalysisTests/core/test_group_traj_access.py::TestAtomGroupTrajAccess::test_atom_velocity_setting[True-False-True] PASSED [ 24%] 558s testsuite/MDAnalysisTests/core/test_group_traj_access.py::TestAtomGroupTrajAccess::test_atom_velocity_setting[True-True-True] PASSED [ 24%] 558s testsuite/MDAnalysisTests/core/test_group_traj_access.py::TestAtomGroupTrajAccess::test_atom_force_setting[True-False-False] PASSED [ 24%] 558s testsuite/MDAnalysisTests/core/test_group_traj_access.py::TestAtomGroupTrajAccess::test_atom_force_setting[True-True-False] PASSED [ 24%] 558s testsuite/MDAnalysisTests/core/test_group_traj_access.py::TestAtomGroupTrajAccess::test_atom_force_setting[True-False-True] PASSED [ 24%] 558s testsuite/MDAnalysisTests/core/test_group_traj_access.py::TestAtomGroupTrajAccess::test_atom_force_setting[True-True-True] PASSED [ 24%] 558s testsuite/MDAnalysisTests/core/test_group_traj_access.py::TestAtom_ForceVelocity::test_atom_force_get PASSED [ 24%] 558s testsuite/MDAnalysisTests/core/test_group_traj_access.py::TestAtom_ForceVelocity::test_atom_velocity_get PASSED [ 24%] 558s testsuite/MDAnalysisTests/core/test_group_traj_access.py::TestAtom_ForceVelocity::test_atom_force_set PASSED [ 24%] 558s testsuite/MDAnalysisTests/core/test_group_traj_access.py::TestAtom_ForceVelocity::test_atom_velocity_set PASSED [ 24%] 558s testsuite/MDAnalysisTests/core/test_group_traj_access.py::TestAtom_ForceVelocity::test_pos_iteration PASSED [ 24%] 558s testsuite/MDAnalysisTests/core/test_group_traj_access.py::TestAtom_ForceVelocity::test_vel_iteration PASSED [ 24%] 559s testsuite/MDAnalysisTests/core/test_group_traj_access.py::TestAtom_ForceVelocity::test_for_iteration PASSED [ 24%] 559s testsuite/MDAnalysisTests/core/test_group_traj_access.py::TestGROVelocities::testParse_velocities PASSED [ 24%] 559s testsuite/MDAnalysisTests/core/test_group_traj_access.py::TestTRRForces::testForces PASSED [ 24%] 559s testsuite/MDAnalysisTests/core/test_group_traj_access.py::TestTRRForcesNativeUnits::testForces PASSED [ 24%] 559s testsuite/MDAnalysisTests/core/test_group_traj_access.py::TestAtomGroupVelocities::test_get_velocities PASSED [ 24%] 559s testsuite/MDAnalysisTests/core/test_group_traj_access.py::TestAtomGroupVelocities::test_velocities PASSED [ 24%] 560s testsuite/MDAnalysisTests/core/test_group_traj_access.py::TestAtomGroupVelocities::test_set_velocities PASSED [ 24%] 560s testsuite/MDAnalysisTests/core/test_group_traj_access.py::TestAtomGroupForces::test_get_forces PASSED [ 24%] 560s testsuite/MDAnalysisTests/core/test_group_traj_access.py::TestAtomGroupForces::test_forces PASSED [ 24%] 560s testsuite/MDAnalysisTests/core/test_group_traj_access.py::TestAtomGroupForces::test_set_forces PASSED [ 24%] 560s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupProperties::test_dimensions PASSED [ 24%] 560s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupProperties::test_group_isunique[group0] PASSED [ 24%] 560s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupProperties::test_group_isunique[group1] PASSED [ 24%] 560s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupProperties::test_group_isunique[group2] PASSED [ 24%] 560s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupProperties::test_group_unique_nocache[group0] PASSED [ 24%] 560s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupProperties::test_group_unique_nocache[group1] PASSED [ 24%] 560s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupProperties::test_group_unique_nocache[group2] PASSED [ 24%] 560s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupProperties::test_create_unique_group_from_unique[group0] PASSED [ 24%] 560s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupProperties::test_create_unique_group_from_unique[group1] PASSED [ 24%] 560s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupProperties::test_create_unique_group_from_unique[group2] PASSED [ 24%] 560s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupProperties::test_group_unique_returns_sorted_copy[ix0-unique_ix0-ugroup0] PASSED [ 24%] 560s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupProperties::test_group_unique_returns_sorted_copy[ix0-unique_ix0-ugroup1] PASSED [ 24%] 560s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupProperties::test_group_unique_returns_sorted_copy[ix0-unique_ix0-ugroup2] PASSED [ 24%] 560s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupProperties::test_group_unique_returns_sorted_copy[ix1-unique_ix1-ugroup0] PASSED [ 24%] 560s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupProperties::test_group_unique_returns_sorted_copy[ix1-unique_ix1-ugroup1] PASSED [ 24%] 560s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupProperties::test_group_unique_returns_sorted_copy[ix1-unique_ix1-ugroup2] PASSED [ 24%] 560s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupProperties::test_group_issorted[ix0-False-ugroup0] PASSED [ 24%] 560s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupProperties::test_group_issorted[ix0-False-ugroup1] PASSED [ 24%] 560s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupProperties::test_group_issorted[ix0-False-ugroup2] PASSED [ 24%] 560s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupProperties::test_group_issorted[ix1-True-ugroup0] PASSED [ 24%] 560s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupProperties::test_group_issorted[ix1-True-ugroup1] PASSED [ 24%] 560s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupProperties::test_group_issorted[ix1-True-ugroup2] PASSED [ 24%] 560s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupProperties::test_group_issorted[ix2-True-ugroup0] PASSED [ 24%] 560s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupProperties::test_group_issorted[ix2-True-ugroup1] PASSED [ 24%] 560s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupProperties::test_group_issorted[ix2-True-ugroup2] PASSED [ 24%] 560s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupProperties::test_group_asunique[ix0-True-unique_ix0-True-ugroup0] PASSED [ 24%] 560s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupProperties::test_group_asunique[ix0-True-unique_ix0-True-ugroup1] PASSED [ 24%] 560s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupProperties::test_group_asunique[ix0-True-unique_ix0-True-ugroup2] PASSED [ 24%] 560s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupProperties::test_group_asunique[ix1-False-unique_ix1-True-ugroup0] PASSED [ 24%] 560s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupProperties::test_group_asunique[ix1-False-unique_ix1-True-ugroup1] PASSED [ 24%] 560s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupProperties::test_group_asunique[ix1-False-unique_ix1-True-ugroup2] PASSED [ 24%] 560s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupProperties::test_group_asunique[ix2-True-unique_ix2-False-ugroup0] PASSED [ 24%] 560s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupProperties::test_group_asunique[ix2-True-unique_ix2-False-ugroup1] PASSED [ 24%] 560s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupProperties::test_group_asunique[ix2-True-unique_ix2-False-ugroup2] PASSED [ 24%] 560s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupProperties::test_group_asunique[ix3-False-unique_ix3-True-ugroup0] PASSED [ 24%] 560s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupProperties::test_group_asunique[ix3-False-unique_ix3-True-ugroup1] PASSED [ 24%] 560s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupProperties::test_group_asunique[ix3-False-unique_ix3-True-ugroup2] PASSED [ 24%] 560s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupProperties::test_group_asunique[ix4-True-unique_ix4-False-ugroup0] PASSED [ 24%] 560s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupProperties::test_group_asunique[ix4-True-unique_ix4-False-ugroup1] PASSED [ 24%] 560s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupProperties::test_group_asunique[ix4-True-unique_ix4-False-ugroup2] PASSED [ 24%] 560s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupProperties::test_group_asunique[ix5-False-unique_ix5-False-ugroup0] PASSED [ 24%] 560s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupProperties::test_group_asunique[ix5-False-unique_ix5-False-ugroup1] PASSED [ 24%] 560s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupProperties::test_group_asunique[ix5-False-unique_ix5-False-ugroup2] PASSED [ 24%] 560s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupProperties::test_group_asunique[ix6-True-unique_ix6-False-ugroup0] PASSED [ 24%] 560s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupProperties::test_group_asunique[ix6-True-unique_ix6-False-ugroup1] PASSED [ 24%] 560s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupProperties::test_group_asunique[ix6-True-unique_ix6-False-ugroup2] PASSED [ 24%] 560s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupProperties::test_group_asunique[ix7-False-unique_ix7-False-ugroup0] PASSED [ 24%] 560s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupProperties::test_group_asunique[ix7-False-unique_ix7-False-ugroup1] PASSED [ 24%] 560s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupProperties::test_group_asunique[ix7-False-unique_ix7-False-ugroup2] PASSED [ 24%] 560s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupProperties::test_group_return_sorted_unsorted_unique[ugroup0] PASSED [ 24%] 560s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupProperties::test_group_return_sorted_unsorted_unique[ugroup1] PASSED [ 24%] 560s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupProperties::test_group_return_sorted_unsorted_unique[ugroup2] PASSED [ 24%] 560s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupProperties::test_group_return_unsorted_sorted_unique[ugroup0] PASSED [ 24%] 560s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupProperties::test_group_return_unsorted_sorted_unique[ugroup1] PASSED [ 24%] 560s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupProperties::test_group_return_unsorted_sorted_unique[ugroup2] PASSED [ 24%] 560s testsuite/MDAnalysisTests/core/test_groups.py::TestEmptyAtomGroup::test_passive_decorator[ag0] PASSED [ 24%] 560s testsuite/MDAnalysisTests/core/test_groups.py::TestEmptyAtomGroup::test_error_empty_group[ag0] PASSED [ 24%] 560s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupSlicing::test_n_atoms[atom] PASSED [ 24%] 560s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupSlicing::test_n_atoms[residue] PASSED [ 24%] 560s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupSlicing::test_n_atoms[segment] PASSED [ 24%] 560s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupSlicing::test_n_residues[atom] PASSED [ 24%] 560s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupSlicing::test_n_residues[residue] PASSED [ 24%] 560s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupSlicing::test_n_residues[segment] PASSED [ 24%] 560s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupSlicing::test_n_segments[atom] PASSED [ 24%] 560s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupSlicing::test_n_segments[residue] PASSED [ 24%] 560s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupSlicing::test_n_segments[segment] PASSED [ 25%] 560s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupSlicing::test_len[atom] PASSED [ 25%] 560s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupSlicing::test_len[residue] PASSED [ 25%] 560s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupSlicing::test_len[segment] PASSED [ 25%] 560s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupSlicing::test_boolean_slicing[atom-list] PASSED [ 25%] 560s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupSlicing::test_boolean_slicing[atom-array] PASSED [ 25%] 560s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupSlicing::test_boolean_slicing[residue-list] PASSED [ 25%] 560s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupSlicing::test_boolean_slicing[residue-array] PASSED [ 25%] 560s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupSlicing::test_boolean_slicing[segment-list] PASSED [ 25%] 560s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupSlicing::test_boolean_slicing[segment-array] PASSED [ 25%] 560s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupSlicing::test_indexerror[atom] PASSED [ 25%] 560s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupSlicing::test_indexerror[residue] PASSED [ 25%] 560s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupSlicing::test_indexerror[segment] PASSED [ 25%] 560s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupSlicing::test_slice[atom-sl0-list] PASSED [ 25%] 560s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupSlicing::test_slice[atom-sl1-] PASSED [ 25%] 560s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupSlicing::test_slice[atom-sl2-list] PASSED [ 25%] 560s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupSlicing::test_slice[atom-sl3-] PASSED [ 25%] 560s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupSlicing::test_slice[atom-sl4-list] PASSED [ 25%] 560s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupSlicing::test_slice[atom-sl5-] PASSED [ 25%] 560s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupSlicing::test_slice[atom-sl6-list] PASSED [ 25%] 560s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupSlicing::test_slice[atom-sl7-] PASSED [ 25%] 560s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupSlicing::test_slice[atom-sl8-list] PASSED [ 25%] 560s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupSlicing::test_slice[atom-sl9-] PASSED [ 25%] 560s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupSlicing::test_slice[atom-sl10-list] PASSED [ 25%] 560s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupSlicing::test_slice[atom-sl11-] PASSED [ 25%] 560s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupSlicing::test_slice[atom-sl12-list] PASSED [ 25%] 560s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupSlicing::test_slice[atom-sl13-] PASSED [ 25%] 560s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupSlicing::test_slice[residue-sl0-list] PASSED [ 25%] 560s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupSlicing::test_slice[residue-sl1-] PASSED [ 25%] 560s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupSlicing::test_slice[residue-sl2-list] PASSED [ 25%] 560s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupSlicing::test_slice[residue-sl3-] PASSED [ 25%] 560s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupSlicing::test_slice[residue-sl4-list] PASSED [ 25%] 560s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupSlicing::test_slice[residue-sl5-] PASSED [ 25%] 560s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupSlicing::test_slice[residue-sl6-list] PASSED [ 25%] 560s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupSlicing::test_slice[residue-sl7-] PASSED [ 25%] 560s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupSlicing::test_slice[residue-sl8-list] PASSED [ 25%] 560s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupSlicing::test_slice[residue-sl9-] PASSED [ 25%] 560s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupSlicing::test_slice[residue-sl10-list] PASSED [ 25%] 560s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupSlicing::test_slice[residue-sl11-] PASSED [ 25%] 560s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupSlicing::test_slice[residue-sl12-list] PASSED [ 25%] 560s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupSlicing::test_slice[residue-sl13-] PASSED [ 25%] 560s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupSlicing::test_slice[segment-sl0-list] PASSED [ 25%] 560s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupSlicing::test_slice[segment-sl1-] PASSED [ 25%] 560s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupSlicing::test_slice[segment-sl2-list] PASSED [ 25%] 560s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupSlicing::test_slice[segment-sl3-] PASSED [ 25%] 560s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupSlicing::test_slice[segment-sl4-list] PASSED [ 25%] 560s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupSlicing::test_slice[segment-sl5-] PASSED [ 25%] 560s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupSlicing::test_slice[segment-sl6-list] PASSED [ 25%] 560s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupSlicing::test_slice[segment-sl7-] PASSED [ 25%] 560s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupSlicing::test_slice[segment-sl8-list] PASSED [ 25%] 560s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupSlicing::test_slice[segment-sl9-] PASSED [ 25%] 560s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupSlicing::test_slice[segment-sl10-list] PASSED [ 25%] 560s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupSlicing::test_slice[segment-sl11-] PASSED [ 25%] 560s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupSlicing::test_slice[segment-sl12-list] PASSED [ 25%] 560s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupSlicing::test_slice[segment-sl13-] PASSED [ 25%] 560s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupSlicing::test_integer_getitem[atom-0] PASSED [ 25%] 560s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupSlicing::test_integer_getitem[atom-1] PASSED [ 25%] 560s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupSlicing::test_integer_getitem[atom--1] PASSED [ 25%] 560s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupSlicing::test_integer_getitem[atom--2] PASSED [ 25%] 560s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupSlicing::test_integer_getitem[residue-0] PASSED [ 25%] 560s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupSlicing::test_integer_getitem[residue-1] PASSED [ 25%] 560s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupSlicing::test_integer_getitem[residue--1] PASSED [ 25%] 560s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupSlicing::test_integer_getitem[residue--2] PASSED [ 25%] 560s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupSlicing::test_integer_getitem[segment-0] PASSED [ 25%] 560s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupSlicing::test_integer_getitem[segment-1] PASSED [ 25%] 560s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupSlicing::test_integer_getitem[segment--1] PASSED [ 25%] 560s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupSlicing::test_integer_getitem[segment--2] PASSED [ 25%] 560s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupSlicing::test_none_getitem[atom] PASSED [ 25%] 560s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupSlicing::test_none_getitem[residue] PASSED [ 25%] 560s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupSlicing::test_none_getitem[segment] PASSED [ 25%] 560s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupAddition::test_addition[a0-b0-AtomGroup] PASSED [ 25%] 560s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupAddition::test_addition[a1-b1-AtomGroup] PASSED [ 25%] 560s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupAddition::test_addition[a2-b2-AtomGroup] PASSED [ 25%] 560s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupAddition::test_addition[a3-b3-AtomGroup] PASSED [ 25%] 560s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupAddition::test_addition[a4-b4-ResidueGroup] PASSED [ 25%] 560s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupAddition::test_addition[a5-b5-ResidueGroup] PASSED [ 25%] 560s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupAddition::test_addition[a6-b6-ResidueGroup] PASSED [ 25%] 560s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupAddition::test_addition[a7-b7-ResidueGroup] PASSED [ 25%] 560s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupAddition::test_addition[a8-b8-SegmentGroup] PASSED [ 25%] 560s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupAddition::test_addition[a9-b9-SegmentGroup] PASSED [ 25%] 560s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupAddition::test_addition[a10-b10-SegmentGroup] PASSED [ 25%] 560s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupAddition::test_addition[a11-b11-SegmentGroup] PASSED [ 25%] 560s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupAddition::test_sum[a0-b0-c0-AtomGroup] PASSED [ 25%] 560s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupAddition::test_sum[a1-b1-c1-AtomGroup] PASSED [ 25%] 560s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupAddition::test_sum[a2-b2-c2-AtomGroup] PASSED [ 25%] 560s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupAddition::test_sum[a3-b3-c3-AtomGroup] PASSED [ 25%] 560s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupAddition::test_sum[a4-b4-c4-AtomGroup] PASSED [ 25%] 560s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupAddition::test_sum[a5-b5-c5-AtomGroup] PASSED [ 25%] 560s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupAddition::test_sum[a6-b6-c6-AtomGroup] PASSED [ 25%] 560s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupAddition::test_sum[a7-b7-c7-AtomGroup] PASSED [ 25%] 560s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupAddition::test_sum[a8-b8-c8-ResidueGroup] PASSED [ 25%] 560s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupAddition::test_sum[a9-b9-c9-ResidueGroup] PASSED [ 25%] 560s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupAddition::test_sum[a10-b10-c10-ResidueGroup] PASSED [ 25%] 560s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupAddition::test_sum[a11-b11-c11-ResidueGroup] PASSED [ 25%] 560s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupAddition::test_sum[a12-b12-c12-ResidueGroup] PASSED [ 25%] 560s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupAddition::test_sum[a13-b13-c13-ResidueGroup] PASSED [ 25%] 560s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupAddition::test_sum[a14-b14-c14-ResidueGroup] PASSED [ 25%] 560s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupAddition::test_sum[a15-b15-c15-ResidueGroup] PASSED [ 25%] 560s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupAddition::test_sum[a16-b16-c16-SegmentGroup] PASSED [ 25%] 560s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupAddition::test_sum[a17-b17-c17-SegmentGroup] PASSED [ 25%] 560s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupAddition::test_sum[a18-b18-c18-SegmentGroup] PASSED [ 25%] 560s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupAddition::test_sum[a19-b19-c19-SegmentGroup] PASSED [ 25%] 560s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupAddition::test_sum[a20-b20-c20-SegmentGroup] PASSED [ 25%] 560s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupAddition::test_sum[a21-b21-c21-SegmentGroup] PASSED [ 25%] 560s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupAddition::test_sum[a22-b22-c22-SegmentGroup] PASSED [ 25%] 560s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupAddition::test_sum[a23-b23-c23-SegmentGroup] PASSED [ 25%] 560s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupAddition::test_bad_sum[a0-b0-c0-AtomGroup] PASSED [ 25%] 560s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupAddition::test_bad_sum[a1-b1-c1-AtomGroup] PASSED [ 25%] 560s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupAddition::test_bad_sum[a2-b2-c2-AtomGroup] PASSED [ 25%] 560s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupAddition::test_bad_sum[a3-b3-c3-AtomGroup] PASSED [ 25%] 560s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupAddition::test_bad_sum[a4-b4-c4-AtomGroup] PASSED [ 25%] 560s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupAddition::test_bad_sum[a5-b5-c5-AtomGroup] PASSED [ 25%] 560s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupAddition::test_bad_sum[a6-b6-c6-AtomGroup] PASSED [ 25%] 560s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupAddition::test_bad_sum[a7-b7-c7-AtomGroup] PASSED [ 25%] 560s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupAddition::test_bad_sum[a8-b8-c8-ResidueGroup] PASSED [ 25%] 560s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupAddition::test_bad_sum[a9-b9-c9-ResidueGroup] PASSED [ 25%] 560s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupAddition::test_bad_sum[a10-b10-c10-ResidueGroup] PASSED [ 25%] 560s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupAddition::test_bad_sum[a11-b11-c11-ResidueGroup] PASSED [ 25%] 560s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupAddition::test_bad_sum[a12-b12-c12-ResidueGroup] PASSED [ 25%] 560s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupAddition::test_bad_sum[a13-b13-c13-ResidueGroup] PASSED [ 25%] 560s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupAddition::test_bad_sum[a14-b14-c14-ResidueGroup] PASSED [ 25%] 560s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupAddition::test_bad_sum[a15-b15-c15-ResidueGroup] PASSED [ 25%] 560s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupAddition::test_bad_sum[a16-b16-c16-SegmentGroup] PASSED [ 25%] 560s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupAddition::test_bad_sum[a17-b17-c17-SegmentGroup] PASSED [ 25%] 560s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupAddition::test_bad_sum[a18-b18-c18-SegmentGroup] PASSED [ 25%] 560s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupAddition::test_bad_sum[a19-b19-c19-SegmentGroup] PASSED [ 25%] 560s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupAddition::test_bad_sum[a20-b20-c20-SegmentGroup] PASSED [ 25%] 560s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupAddition::test_bad_sum[a21-b21-c21-SegmentGroup] PASSED [ 25%] 560s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupAddition::test_bad_sum[a22-b22-c22-SegmentGroup] PASSED [ 25%] 560s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupAddition::test_bad_sum[a23-b23-c23-SegmentGroup] PASSED [ 25%] 560s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupAddition::test_contains[atom] PASSED [ 25%] 560s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupAddition::test_contains[residue] PASSED [ 25%] 560s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupAddition::test_contains[segment] PASSED [ 25%] 560s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupAddition::test_contains_false[atom] PASSED [ 25%] 560s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupAddition::test_contains_false[residue] PASSED [ 25%] 560s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupAddition::test_contains_false[segment] PASSED [ 25%] 560s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupAddition::test_contains_wronglevel[atom-residue] PASSED [ 25%] 560s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupAddition::test_contains_wronglevel[atom-segment] PASSED [ 25%] 560s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupAddition::test_contains_wronglevel[residue-atom] PASSED [ 25%] 560s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupAddition::test_contains_wronglevel[residue-segment] PASSED [ 25%] 560s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupAddition::test_contains_wronglevel[segment-atom] PASSED [ 25%] 560s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupAddition::test_contains_wronglevel[segment-residue] PASSED [ 25%] 560s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupAddition::test_crosslevel[a0-b0] PASSED [ 25%] 560s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupAddition::test_crosslevel[a1-b1] PASSED [ 25%] 560s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupAddition::test_crosslevel[a2-b2] PASSED [ 25%] 560s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupAddition::test_crosslevel[a3-b3] PASSED [ 25%] 560s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupAddition::test_crosslevel[a4-b4] PASSED [ 25%] 560s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupAddition::test_crosslevel[a5-b5] PASSED [ 25%] 560s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupAddition::test_crosslevel[a6-b6] PASSED [ 25%] 560s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupAddition::test_crosslevel[a7-b7] PASSED [ 25%] 560s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupAddition::test_crosslevel[a8-b8] PASSED [ 25%] 560s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupAddition::test_crosslevel[a9-b9] PASSED [ 25%] 560s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupAddition::test_crosslevel[a10-b10] PASSED [ 25%] 560s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupAddition::test_crosslevel[a11-b11] PASSED [ 25%] 560s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupAddition::test_crosslevel[a12-b12] PASSED [ 25%] 560s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupAddition::test_crosslevel[a13-b13] PASSED [ 25%] 560s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupAddition::test_crosslevel[a14-b14] PASSED [ 25%] 560s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupAddition::test_crosslevel[a15-b15] PASSED [ 25%] 560s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupAddition::test_crosslevel[a16-b16] PASSED [ 25%] 560s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupAddition::test_crosslevel[a17-b17] PASSED [ 25%] 560s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupAddition::test_crosslevel[a18-b18] PASSED [ 25%] 560s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupAddition::test_crosslevel[a19-b19] PASSED [ 25%] 560s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupAddition::test_crosslevel[a20-b20] PASSED [ 25%] 560s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupAddition::test_crosslevel[a21-b21] PASSED [ 25%] 560s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupAddition::test_crosslevel[a22-b22] PASSED [ 25%] 560s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupAddition::test_crosslevel[a23-b23] PASSED [ 25%] 560s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupLevelTransition::test_atomgroup_to_atomgroup PASSED [ 25%] 560s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupLevelTransition::test_atomgroup_to_residuegroup PASSED [ 25%] 560s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupLevelTransition::test_atomgroup_to_segmentgroup PASSED [ 25%] 560s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupLevelTransition::test_residuegroup_to_atomgroup PASSED [ 25%] 560s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupLevelTransition::test_residuegroup_to_residuegroup PASSED [ 25%] 560s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupLevelTransition::test_residuegroup_to_segmentgroup PASSED [ 25%] 560s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupLevelTransition::test_segmentgroup_to_atomgroup PASSED [ 25%] 560s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupLevelTransition::test_segmentgroup_to_residuegroup PASSED [ 25%] 560s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupLevelTransition::test_segmentgroup_to_segmentgroup PASSED [ 25%] 560s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupLevelTransition::test_atom_to_residue PASSED [ 25%] 560s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupLevelTransition::test_atom_to_segment PASSED [ 25%] 560s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupLevelTransition::test_residue_to_atomgroup PASSED [ 25%] 560s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupLevelTransition::test_residue_to_segment PASSED [ 25%] 560s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupLevelTransition::test_segment_to_atomgroup PASSED [ 25%] 560s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupLevelTransition::test_segment_to_residuegroup PASSED [ 25%] 560s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupLevelTransition::test_atomgroup_to_residuegroup_unique PASSED [ 25%] 560s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupLevelTransition::test_atomgroup_to_segmentgroup_unique PASSED [ 25%] 560s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupLevelTransition::test_residuegroup_to_segmentgroup_unique PASSED [ 25%] 560s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupLevelTransition::test_residuegroup_to_atomgroup_listcomp PASSED [ 26%] 560s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupLevelTransition::test_segmentgroup_to_residuegroup_listcomp PASSED [ 26%] 560s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupLevelTransition::test_segmentgroup_to_atomgroup_listcomp PASSED [ 26%] 560s testsuite/MDAnalysisTests/core/test_groups.py::TestComponentComparisons::test_lt[abc0] PASSED [ 26%] 560s testsuite/MDAnalysisTests/core/test_groups.py::TestComponentComparisons::test_lt[abc1] PASSED [ 26%] 560s testsuite/MDAnalysisTests/core/test_groups.py::TestComponentComparisons::test_lt[abc2] PASSED [ 26%] 560s testsuite/MDAnalysisTests/core/test_groups.py::TestComponentComparisons::test_gt[abc0] PASSED [ 26%] 560s testsuite/MDAnalysisTests/core/test_groups.py::TestComponentComparisons::test_gt[abc1] PASSED [ 26%] 560s testsuite/MDAnalysisTests/core/test_groups.py::TestComponentComparisons::test_gt[abc2] PASSED [ 26%] 560s testsuite/MDAnalysisTests/core/test_groups.py::TestComponentComparisons::test_ge[abc0] PASSED [ 26%] 560s testsuite/MDAnalysisTests/core/test_groups.py::TestComponentComparisons::test_ge[abc1] PASSED [ 26%] 560s testsuite/MDAnalysisTests/core/test_groups.py::TestComponentComparisons::test_ge[abc2] PASSED [ 26%] 560s testsuite/MDAnalysisTests/core/test_groups.py::TestComponentComparisons::test_le[abc0] PASSED [ 26%] 560s testsuite/MDAnalysisTests/core/test_groups.py::TestComponentComparisons::test_le[abc1] PASSED [ 26%] 560s testsuite/MDAnalysisTests/core/test_groups.py::TestComponentComparisons::test_le[abc2] PASSED [ 26%] 560s testsuite/MDAnalysisTests/core/test_groups.py::TestComponentComparisons::test_neq[abc0] PASSED [ 26%] 560s testsuite/MDAnalysisTests/core/test_groups.py::TestComponentComparisons::test_neq[abc1] PASSED [ 26%] 560s testsuite/MDAnalysisTests/core/test_groups.py::TestComponentComparisons::test_neq[abc2] PASSED [ 26%] 560s testsuite/MDAnalysisTests/core/test_groups.py::TestComponentComparisons::test_eq[abc0] PASSED [ 26%] 560s testsuite/MDAnalysisTests/core/test_groups.py::TestComponentComparisons::test_eq[abc1] PASSED [ 26%] 560s testsuite/MDAnalysisTests/core/test_groups.py::TestComponentComparisons::test_eq[abc2] PASSED [ 26%] 560s testsuite/MDAnalysisTests/core/test_groups.py::TestComponentComparisons::test_sorting[abc0] PASSED [ 26%] 560s testsuite/MDAnalysisTests/core/test_groups.py::TestComponentComparisons::test_sorting[abc1] PASSED [ 26%] 560s testsuite/MDAnalysisTests/core/test_groups.py::TestComponentComparisons::test_sorting[abc2] PASSED [ 26%] 560s testsuite/MDAnalysisTests/core/test_groups.py::TestComponentComparisons::test_crosslevel_cmp[x0-y0] PASSED [ 26%] 560s testsuite/MDAnalysisTests/core/test_groups.py::TestComponentComparisons::test_crosslevel_cmp[x1-y1] PASSED [ 26%] 560s testsuite/MDAnalysisTests/core/test_groups.py::TestComponentComparisons::test_crosslevel_cmp[x2-y2] PASSED [ 26%] 560s testsuite/MDAnalysisTests/core/test_groups.py::TestComponentComparisons::test_crosslevel_cmp[x3-y3] PASSED [ 26%] 560s testsuite/MDAnalysisTests/core/test_groups.py::TestComponentComparisons::test_crosslevel_cmp[x4-y4] PASSED [ 26%] 560s testsuite/MDAnalysisTests/core/test_groups.py::TestComponentComparisons::test_crosslevel_cmp[x5-y5] PASSED [ 26%] 560s testsuite/MDAnalysisTests/core/test_groups.py::TestComponentComparisons::test_crosslevel_eq[x0-y0] PASSED [ 26%] 560s testsuite/MDAnalysisTests/core/test_groups.py::TestComponentComparisons::test_crosslevel_eq[x1-y1] PASSED [ 26%] 560s testsuite/MDAnalysisTests/core/test_groups.py::TestComponentComparisons::test_crosslevel_eq[x2-y2] PASSED [ 26%] 560s testsuite/MDAnalysisTests/core/test_groups.py::TestComponentComparisons::test_crosslevel_eq[x3-y3] PASSED [ 26%] 560s testsuite/MDAnalysisTests/core/test_groups.py::TestComponentComparisons::test_crosslevel_eq[x4-y4] PASSED [ 26%] 560s testsuite/MDAnalysisTests/core/test_groups.py::TestComponentComparisons::test_crosslevel_eq[x5-y5] PASSED [ 26%] 560s testsuite/MDAnalysisTests/core/test_groups.py::TestMetaclassMagic::test_new_class PASSED [ 26%] 560s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupBy::test_groupby_float PASSED [ 26%] 560s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupBy::test_groupby_string[segids0] PASSED [ 26%] 560s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupBy::test_groupby_string[segids1] PASSED [ 26%] 560s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupBy::test_groupby_string[segids2] PASSED [ 26%] 560s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupBy::test_groupby_int PASSED [ 26%] 560s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupBy::test_groupby_float_string PASSED [ 26%] 560s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupBy::test_groupby_int_float PASSED [ 26%] 560s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupBy::test_groupby_string_int PASSED [ 26%] 560s testsuite/MDAnalysisTests/core/test_groups.py::TestReprs::test_atom_repr PASSED [ 26%] 560s testsuite/MDAnalysisTests/core/test_groups.py::TestReprs::test_residue_repr PASSED [ 26%] 560s testsuite/MDAnalysisTests/core/test_groups.py::TestReprs::test_segment_repr PASSED [ 26%] 560s testsuite/MDAnalysisTests/core/test_groups.py::TestReprs::test_atomgroup_repr PASSED [ 26%] 560s testsuite/MDAnalysisTests/core/test_groups.py::TestReprs::test_atomgroup_str_short PASSED [ 26%] 560s testsuite/MDAnalysisTests/core/test_groups.py::TestReprs::test_atomgroup_str_long PASSED [ 26%] 560s testsuite/MDAnalysisTests/core/test_groups.py::TestReprs::test_residuegroup_repr PASSED [ 26%] 560s testsuite/MDAnalysisTests/core/test_groups.py::TestReprs::test_residuegroup_str_short PASSED [ 26%] 561s testsuite/MDAnalysisTests/core/test_groups.py::TestReprs::test_residuegroup_str_long PASSED [ 26%] 561s testsuite/MDAnalysisTests/core/test_groups.py::TestReprs::test_segmentgroup_repr PASSED [ 26%] 561s testsuite/MDAnalysisTests/core/test_groups.py::TestReprs::test_segmentgroup_str PASSED [ 26%] 561s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupBaseOperators::test_len[atoms] PASSED [ 26%] 561s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupBaseOperators::test_len[residues] PASSED [ 26%] 561s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupBaseOperators::test_len[segments] PASSED [ 26%] 561s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupBaseOperators::test_len_duplicated_and_scrambled[atoms] PASSED [ 26%] 561s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupBaseOperators::test_len_duplicated_and_scrambled[residues] PASSED [ 26%] 561s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupBaseOperators::test_len_duplicated_and_scrambled[segments] PASSED [ 26%] 561s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupBaseOperators::test_equal[simple-atoms] PASSED [ 26%] 561s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupBaseOperators::test_equal[simple-residues] PASSED [ 26%] 561s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupBaseOperators::test_equal[simple-segments] PASSED [ 26%] 561s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupBaseOperators::test_equal[scrambled-atoms] PASSED [ 26%] 561s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupBaseOperators::test_equal[scrambled-residues] PASSED [ 26%] 561s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupBaseOperators::test_equal[scrambled-segments] PASSED [ 26%] 561s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupBaseOperators::test_copy[group0] PASSED [ 26%] 561s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupBaseOperators::test_copy[group1] PASSED [ 26%] 561s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupBaseOperators::test_copy[group2] PASSED [ 26%] 561s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupBaseOperators::test_issubset[simple-atoms] PASSED [ 26%] 561s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupBaseOperators::test_issubset[simple-residues] PASSED [ 26%] 561s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupBaseOperators::test_issubset[simple-segments] PASSED [ 26%] 561s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupBaseOperators::test_issubset[scrambled-atoms] PASSED [ 26%] 561s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupBaseOperators::test_issubset[scrambled-residues] PASSED [ 26%] 561s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupBaseOperators::test_issubset[scrambled-segments] PASSED [ 26%] 561s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupBaseOperators::test_is_strict_subset[simple-atoms] PASSED [ 26%] 561s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupBaseOperators::test_is_strict_subset[simple-residues] PASSED [ 26%] 561s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupBaseOperators::test_is_strict_subset[simple-segments] PASSED [ 26%] 561s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupBaseOperators::test_is_strict_subset[scrambled-atoms] PASSED [ 26%] 561s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupBaseOperators::test_is_strict_subset[scrambled-residues] PASSED [ 26%] 561s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupBaseOperators::test_is_strict_subset[scrambled-segments] PASSED [ 26%] 561s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupBaseOperators::test_issuperset[simple-atoms] PASSED [ 26%] 561s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupBaseOperators::test_issuperset[simple-residues] PASSED [ 26%] 561s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupBaseOperators::test_issuperset[simple-segments] PASSED [ 26%] 561s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupBaseOperators::test_issuperset[scrambled-atoms] PASSED [ 26%] 561s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupBaseOperators::test_issuperset[scrambled-residues] PASSED [ 26%] 561s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupBaseOperators::test_issuperset[scrambled-segments] PASSED [ 26%] 561s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupBaseOperators::test_is_strict_superset[simple-atoms] PASSED [ 26%] 561s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupBaseOperators::test_is_strict_superset[simple-residues] PASSED [ 26%] 561s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupBaseOperators::test_is_strict_superset[simple-segments] PASSED [ 26%] 561s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupBaseOperators::test_is_strict_superset[scrambled-atoms] PASSED [ 26%] 561s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupBaseOperators::test_is_strict_superset[scrambled-residues] PASSED [ 26%] 561s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupBaseOperators::test_is_strict_superset[scrambled-segments] PASSED [ 26%] 561s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupBaseOperators::test_concatenate[simple-atoms] PASSED [ 26%] 561s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupBaseOperators::test_concatenate[simple-residues] PASSED [ 26%] 561s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupBaseOperators::test_concatenate[simple-segments] PASSED [ 26%] 561s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupBaseOperators::test_concatenate[scrambled-atoms] PASSED [ 26%] 561s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupBaseOperators::test_concatenate[scrambled-residues] PASSED [ 26%] 561s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupBaseOperators::test_concatenate[scrambled-segments] PASSED [ 26%] 561s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupBaseOperators::test_union[simple-atoms] PASSED [ 26%] 561s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupBaseOperators::test_union[simple-residues] PASSED [ 26%] 561s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupBaseOperators::test_union[simple-segments] PASSED [ 26%] 561s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupBaseOperators::test_union[scrambled-atoms] PASSED [ 26%] 561s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupBaseOperators::test_union[scrambled-residues] PASSED [ 26%] 561s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupBaseOperators::test_union[scrambled-segments] PASSED [ 26%] 561s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupBaseOperators::test_intersection[simple-atoms] PASSED [ 26%] 561s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupBaseOperators::test_intersection[simple-residues] PASSED [ 26%] 561s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupBaseOperators::test_intersection[simple-segments] PASSED [ 26%] 561s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupBaseOperators::test_intersection[scrambled-atoms] PASSED [ 26%] 561s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupBaseOperators::test_intersection[scrambled-residues] PASSED [ 26%] 561s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupBaseOperators::test_intersection[scrambled-segments] PASSED [ 26%] 561s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupBaseOperators::test_subtract[simple-atoms] PASSED [ 26%] 561s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupBaseOperators::test_subtract[simple-residues] PASSED [ 26%] 561s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupBaseOperators::test_subtract[simple-segments] PASSED [ 26%] 561s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupBaseOperators::test_subtract[scrambled-atoms] PASSED [ 26%] 561s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupBaseOperators::test_subtract[scrambled-residues] PASSED [ 26%] 561s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupBaseOperators::test_subtract[scrambled-segments] PASSED [ 26%] 561s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupBaseOperators::test_difference[simple-atoms] PASSED [ 26%] 561s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupBaseOperators::test_difference[simple-residues] PASSED [ 26%] 561s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupBaseOperators::test_difference[simple-segments] PASSED [ 26%] 561s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupBaseOperators::test_difference[scrambled-atoms] PASSED [ 26%] 561s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupBaseOperators::test_difference[scrambled-residues] PASSED [ 26%] 561s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupBaseOperators::test_difference[scrambled-segments] PASSED [ 26%] 561s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupBaseOperators::test_symmetric_difference[simple-atoms] PASSED [ 26%] 561s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupBaseOperators::test_symmetric_difference[simple-residues] PASSED [ 26%] 561s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupBaseOperators::test_symmetric_difference[simple-segments] PASSED [ 26%] 561s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupBaseOperators::test_symmetric_difference[scrambled-atoms] PASSED [ 26%] 561s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupBaseOperators::test_symmetric_difference[scrambled-residues] PASSED [ 26%] 561s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupBaseOperators::test_symmetric_difference[scrambled-segments] PASSED [ 26%] 561s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupBaseOperators::test_isdisjoint[simple-atoms] PASSED [ 26%] 561s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupBaseOperators::test_isdisjoint[simple-residues] PASSED [ 26%] 561s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupBaseOperators::test_isdisjoint[simple-segments] PASSED [ 26%] 561s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupBaseOperators::test_isdisjoint[scrambled-atoms] PASSED [ 26%] 561s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupBaseOperators::test_isdisjoint[scrambled-residues] PASSED [ 26%] 561s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupBaseOperators::test_isdisjoint[scrambled-segments] PASSED [ 26%] 561s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupBaseOperators::test_failing_pairs[left0-right0] PASSED [ 26%] 561s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupBaseOperators::test_failing_pairs[left1-right1] PASSED [ 26%] 561s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupBaseOperators::test_failing_pairs[left2-right2] PASSED [ 26%] 561s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupBaseOperators::test_failing_pairs[left3-right3] PASSED [ 26%] 561s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupBaseOperators::test_failing_pairs[left4-right4] PASSED [ 26%] 561s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupBaseOperators::test_failing_pairs[left5-right5] PASSED [ 26%] 561s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupBaseOperators::test_failing_pairs[left6-right6] PASSED [ 26%] 561s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupBaseOperators::test_failing_pairs[left7-right7] PASSED [ 26%] 561s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupBaseOperators::test_failing_pairs[left8-right8] PASSED [ 26%] 561s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupBaseOperators::test_failing_pairs[left9-right9] PASSED [ 26%] 561s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupBaseOperators::test_failing_pairs[left10-right10] PASSED [ 26%] 561s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupBaseOperators::test_failing_pairs[left11-right11] PASSED [ 26%] 561s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupBaseOperators::test_failing_pairs[left12-right12] PASSED [ 26%] 561s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupBaseOperators::test_failing_pairs[left13-right13] PASSED [ 26%] 561s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupBaseOperators::test_failing_pairs[left14-right14] PASSED [ 26%] 561s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupBaseOperators::test_failing_pairs[left15-right15] PASSED [ 26%] 561s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupBaseOperators::test_failing_pairs[left16-right16] PASSED [ 26%] 561s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupBaseOperators::test_failing_pairs[left17-right17] PASSED [ 26%] 561s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupBaseOperators::test_failing_pairs[left18-right18] PASSED [ 26%] 561s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupBaseOperators::test_failing_pairs[left19-right19] PASSED [ 26%] 561s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupBaseOperators::test_failing_pairs[left20-right20] PASSED [ 26%] 561s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupBaseOperators::test_failing_pairs[left21-right21] PASSED [ 26%] 561s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupBaseOperators::test_failing_pairs[left22-right22] PASSED [ 26%] 561s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupBaseOperators::test_failing_pairs[left23-right23] PASSED [ 26%] 561s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupBaseOperators::test_failing_pairs[left24-invalid] PASSED [ 26%] 561s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupBaseOperators::test_succeeding_pairs[left0-right0] PASSED [ 26%] 561s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupBaseOperators::test_succeeding_pairs[left1-right1] PASSED [ 26%] 561s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupBaseOperators::test_succeeding_pairs[left2-right2] PASSED [ 26%] 561s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupBaseOperators::test_succeeding_pairs[left3-right3] PASSED [ 26%] 561s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupBaseOperators::test_succeeding_pairs[left4-right4] PASSED [ 26%] 561s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupBaseOperators::test_succeeding_pairs[left5-right5] PASSED [ 26%] 561s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupBaseOperators::test_succeeding_pairs[left6-right6] PASSED [ 26%] 561s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupBaseOperators::test_succeeding_pairs[left7-right7] PASSED [ 26%] 561s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupBaseOperators::test_succeeding_pairs[left8-right8] PASSED [ 26%] 561s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupBaseOperators::test_succeeding_pairs[left9-right9] PASSED [ 26%] 561s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupBaseOperators::test_succeeding_pairs[left10-right10] PASSED [ 26%] 561s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupBaseOperators::test_succeeding_pairs[left11-right11] PASSED [ 26%] 561s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupBaseOperators::test_only_same_level_different_universes PASSED [ 26%] 561s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupBaseOperators::test_shortcut_overriding[atoms-add-concatenate] PASSED [ 26%] 561s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupBaseOperators::test_shortcut_overriding[atoms-sub-difference] PASSED [ 26%] 561s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupBaseOperators::test_shortcut_overriding[atoms-and_-intersection] PASSED [ 26%] 561s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupBaseOperators::test_shortcut_overriding[atoms-or_-union] PASSED [ 26%] 561s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupBaseOperators::test_shortcut_overriding[atoms-xor-symmetric_difference] PASSED [ 26%] 561s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupBaseOperators::test_shortcut_overriding[residues-add-concatenate] PASSED [ 26%] 561s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupBaseOperators::test_shortcut_overriding[residues-sub-difference] PASSED [ 26%] 561s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupBaseOperators::test_shortcut_overriding[residues-and_-intersection] PASSED [ 26%] 561s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupBaseOperators::test_shortcut_overriding[residues-or_-union] PASSED [ 26%] 561s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupBaseOperators::test_shortcut_overriding[residues-xor-symmetric_difference] PASSED [ 27%] 561s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupBaseOperators::test_shortcut_overriding[segments-add-concatenate] PASSED [ 27%] 561s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupBaseOperators::test_shortcut_overriding[segments-sub-difference] PASSED [ 27%] 561s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupBaseOperators::test_shortcut_overriding[segments-and_-intersection] PASSED [ 27%] 561s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupBaseOperators::test_shortcut_overriding[segments-or_-union] PASSED [ 27%] 561s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupBaseOperators::test_shortcut_overriding[segments-xor-symmetric_difference] PASSED [ 27%] 561s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupHash::test_hash_exists[atoms] PASSED [ 27%] 561s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupHash::test_hash_exists[residues] PASSED [ 27%] 561s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupHash::test_hash_exists[segments] PASSED [ 27%] 561s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupHash::test_hash_equality[atoms] PASSED [ 27%] 561s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupHash::test_hash_equality[residues] PASSED [ 27%] 561s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupHash::test_hash_equality[segments] PASSED [ 27%] 561s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupHash::test_hash_difference[atoms] PASSED [ 27%] 561s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupHash::test_hash_difference[residues] PASSED [ 27%] 561s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupHash::test_hash_difference[segments] PASSED [ 27%] 561s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupHash::test_hash_difference_cross[atoms-residues] PASSED [ 27%] 561s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupHash::test_hash_difference_cross[atoms-segments] PASSED [ 27%] 561s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupHash::test_hash_difference_cross[residues-atoms] PASSED [ 27%] 561s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupHash::test_hash_difference_cross[residues-segments] PASSED [ 27%] 561s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupHash::test_hash_difference_cross[segments-atoms] PASSED [ 27%] 561s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupHash::test_hash_difference_cross[segments-residues] PASSED [ 27%] 561s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupHash::test_hash_diff_cross_universe[atoms] PASSED [ 27%] 561s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupHash::test_hash_diff_cross_universe[residues] PASSED [ 27%] 561s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupHash::test_hash_diff_cross_universe[segments] PASSED [ 27%] 561s testsuite/MDAnalysisTests/core/test_groups.py::TestAtomGroup::test_PDB_atom_repr PASSED [ 27%] 561s testsuite/MDAnalysisTests/core/test_groups.py::TestAttributeSetting::test_setting_group_fail[atoms] PASSED [ 27%] 561s testsuite/MDAnalysisTests/core/test_groups.py::TestAttributeSetting::test_setting_group_fail[residues] PASSED [ 27%] 561s testsuite/MDAnalysisTests/core/test_groups.py::TestAttributeSetting::test_setting_group_fail[segments] PASSED [ 27%] 561s testsuite/MDAnalysisTests/core/test_groups.py::TestAttributeSetting::test_setting_component_fails[atoms] PASSED [ 27%] 561s testsuite/MDAnalysisTests/core/test_groups.py::TestAttributeSetting::test_setting_component_fails[residues] PASSED [ 27%] 561s testsuite/MDAnalysisTests/core/test_groups.py::TestAttributeSetting::test_setting_component_fails[segments] PASSED [ 27%] 561s testsuite/MDAnalysisTests/core/test_groups.py::TestAttributeSetting::test_group_set_singular[atoms-name] PASSED [ 27%] 561s testsuite/MDAnalysisTests/core/test_groups.py::TestAttributeSetting::test_group_set_singular[atoms-resid] PASSED [ 27%] 561s testsuite/MDAnalysisTests/core/test_groups.py::TestAttributeSetting::test_group_set_singular[atoms-segid] PASSED [ 27%] 561s testsuite/MDAnalysisTests/core/test_groups.py::TestAttributeSetting::test_group_set_singular[residues-name] PASSED [ 27%] 561s testsuite/MDAnalysisTests/core/test_groups.py::TestAttributeSetting::test_group_set_singular[residues-resid] PASSED [ 27%] 561s testsuite/MDAnalysisTests/core/test_groups.py::TestAttributeSetting::test_group_set_singular[residues-segid] PASSED [ 27%] 561s testsuite/MDAnalysisTests/core/test_groups.py::TestAttributeSetting::test_group_set_singular[segments-name] PASSED [ 27%] 561s testsuite/MDAnalysisTests/core/test_groups.py::TestAttributeSetting::test_group_set_singular[segments-resid] PASSED [ 27%] 561s testsuite/MDAnalysisTests/core/test_groups.py::TestAttributeSetting::test_group_set_singular[segments-segid] PASSED [ 27%] 561s testsuite/MDAnalysisTests/core/test_groups.py::TestAttributeSetting::test_atom_set_name PASSED [ 27%] 561s testsuite/MDAnalysisTests/core/test_groups.py::TestAttributeSetting::test_atom_set_resid PASSED [ 27%] 561s testsuite/MDAnalysisTests/core/test_groups.py::TestAttributeSetting::test_atom_set_segid PASSED [ 27%] 561s testsuite/MDAnalysisTests/core/test_groups.py::TestAttributeSetting::test_residue_set_name PASSED [ 27%] 561s testsuite/MDAnalysisTests/core/test_groups.py::TestAttributeSetting::test_residue_set_resid PASSED [ 27%] 561s testsuite/MDAnalysisTests/core/test_groups.py::TestAttributeSetting::test_residue_set_segid PASSED [ 27%] 561s testsuite/MDAnalysisTests/core/test_groups.py::TestAttributeSetting::test_segment_set_name PASSED [ 27%] 561s testsuite/MDAnalysisTests/core/test_groups.py::TestAttributeSetting::test_segment_set_resid PASSED [ 27%] 561s testsuite/MDAnalysisTests/core/test_groups.py::TestAttributeSetting::test_segment_set_segid PASSED [ 27%] 561s testsuite/MDAnalysisTests/core/test_groups.py::TestAttributeSetting::test_component_set_plural[atoms-names] PASSED [ 27%] 561s testsuite/MDAnalysisTests/core/test_groups.py::TestAttributeSetting::test_component_set_plural[atoms-resids] PASSED [ 27%] 561s testsuite/MDAnalysisTests/core/test_groups.py::TestAttributeSetting::test_component_set_plural[atoms-segids] PASSED [ 27%] 561s testsuite/MDAnalysisTests/core/test_groups.py::TestAttributeSetting::test_component_set_plural[residues-names] PASSED [ 27%] 561s testsuite/MDAnalysisTests/core/test_groups.py::TestAttributeSetting::test_component_set_plural[residues-resids] PASSED [ 27%] 561s testsuite/MDAnalysisTests/core/test_groups.py::TestAttributeSetting::test_component_set_plural[residues-segids] PASSED [ 27%] 561s testsuite/MDAnalysisTests/core/test_groups.py::TestAttributeSetting::test_component_set_plural[segments-names] PASSED [ 27%] 561s testsuite/MDAnalysisTests/core/test_groups.py::TestAttributeSetting::test_component_set_plural[segments-resids] PASSED [ 27%] 561s testsuite/MDAnalysisTests/core/test_groups.py::TestAttributeSetting::test_component_set_plural[segments-segids] PASSED [ 27%] 561s testsuite/MDAnalysisTests/core/test_groups.py::TestAttributeGetting::test_get_present_topattr_group[masses] PASSED [ 27%] 561s testsuite/MDAnalysisTests/core/test_groups.py::TestAttributeGetting::test_get_present_topattr_group[altLocs] PASSED [ 27%] 561s testsuite/MDAnalysisTests/core/test_groups.py::TestAttributeGetting::test_get_present_topattr_component[mass] PASSED [ 27%] 561s testsuite/MDAnalysisTests/core/test_groups.py::TestAttributeGetting::test_get_present_topattr_component[altLoc] PASSED [ 27%] 561s testsuite/MDAnalysisTests/core/test_groups.py::TestAttributeGetting::test_get_plural_topattr_from_component[masses-mass] PASSED [ 27%] 561s testsuite/MDAnalysisTests/core/test_groups.py::TestAttributeGetting::test_get_plural_topattr_from_component[altLocs-altLoc] PASSED [ 27%] 561s testsuite/MDAnalysisTests/core/test_groups.py::TestAttributeGetting::test_get_sing_topattr_from_group[masses-mass] PASSED [ 27%] 561s testsuite/MDAnalysisTests/core/test_groups.py::TestAttributeGetting::test_get_sing_topattr_from_group[altLocs-altLoc] PASSED [ 27%] 561s testsuite/MDAnalysisTests/core/test_groups.py::TestAttributeGetting::test_get_absent_topattr_group[elements-element] PASSED [ 27%] 561s testsuite/MDAnalysisTests/core/test_groups.py::TestAttributeGetting::test_get_absent_topattr_group[tempfactors-tempfactor] PASSED [ 27%] 561s testsuite/MDAnalysisTests/core/test_groups.py::TestAttributeGetting::test_get_absent_topattr_group[bonds-bonds] PASSED [ 27%] 561s testsuite/MDAnalysisTests/core/test_groups.py::TestAttributeGetting::test_get_non_topattr PASSED [ 27%] 561s testsuite/MDAnalysisTests/core/test_groups.py::TestAttributeGetting::test_unwrap_without_bonds PASSED [ 27%] 561s testsuite/MDAnalysisTests/core/test_groups.py::TestAttributeGetting::test_get_absent_attr_method PASSED [ 27%] 561s testsuite/MDAnalysisTests/core/test_groups.py::TestAttributeGetting::test_get_absent_attrprop PASSED [ 27%] 561s testsuite/MDAnalysisTests/core/test_groups.py::TestAttributeGetting::test_attrprop_wrong_group PASSED [ 27%] 561s testsuite/MDAnalysisTests/core/test_groups.py::TestAttributeGetting::test_attrmethod_wrong_group PASSED [ 27%] 561s testsuite/MDAnalysisTests/core/test_groups.py::TestAttributeGetting::test_wrong_name[altlocs] PASSED [ 27%] 561s testsuite/MDAnalysisTests/core/test_groups.py::TestAttributeGetting::test_wrong_name[alt_Locs] PASSED [ 27%] 561s testsuite/MDAnalysisTests/core/test_groups.py::TestInitGroup::test_object_init[atoms] PASSED [ 27%] 561s testsuite/MDAnalysisTests/core/test_groups.py::TestInitGroup::test_object_init[residues] PASSED [ 27%] 561s testsuite/MDAnalysisTests/core/test_groups.py::TestInitGroup::test_object_init[segments] PASSED [ 27%] 561s testsuite/MDAnalysisTests/core/test_groups.py::TestInitGroup::test_number_init[atoms] PASSED [ 27%] 561s testsuite/MDAnalysisTests/core/test_groups.py::TestInitGroup::test_number_init[residues] PASSED [ 27%] 561s testsuite/MDAnalysisTests/core/test_groups.py::TestInitGroup::test_number_init[segments] PASSED [ 27%] 561s testsuite/MDAnalysisTests/core/test_groups.py::TestInitGroup::test_VE_no_uni[atoms] PASSED [ 27%] 561s testsuite/MDAnalysisTests/core/test_groups.py::TestInitGroup::test_VE_no_uni[residues] PASSED [ 27%] 561s testsuite/MDAnalysisTests/core/test_groups.py::TestInitGroup::test_VE_no_uni[segments] PASSED [ 27%] 561s testsuite/MDAnalysisTests/core/test_groups.py::TestInitGroup::test_VE_no_uni_2[atoms] PASSED [ 27%] 561s testsuite/MDAnalysisTests/core/test_groups.py::TestInitGroup::test_VE_no_uni_2[residues] PASSED [ 27%] 561s testsuite/MDAnalysisTests/core/test_groups.py::TestInitGroup::test_VE_no_uni_2[segments] PASSED [ 27%] 561s testsuite/MDAnalysisTests/core/test_groups.py::TestDecorator::test_wrap_and_unwrap_deprecation[True-True-fragments] PASSED [ 27%] 561s testsuite/MDAnalysisTests/core/test_groups.py::TestDecorator::test_wrap_and_unwrap_deprecation[True-True-molecules] PASSED [ 27%] 561s testsuite/MDAnalysisTests/core/test_groups.py::TestDecorator::test_wrap_and_unwrap_deprecation[True-True-residues] PASSED [ 27%] 561s testsuite/MDAnalysisTests/core/test_groups.py::TestDecorator::test_wrap_and_unwrap_deprecation[True-True-group] PASSED [ 27%] 561s testsuite/MDAnalysisTests/core/test_groups.py::TestDecorator::test_wrap_and_unwrap_deprecation[True-True-segments] PASSED [ 27%] 561s testsuite/MDAnalysisTests/core/test_groups.py::TestDecorator::test_wrap_and_unwrap_deprecation[True-False-fragments] PASSED [ 27%] 561s testsuite/MDAnalysisTests/core/test_groups.py::TestDecorator::test_wrap_and_unwrap_deprecation[True-False-molecules] PASSED [ 27%] 561s testsuite/MDAnalysisTests/core/test_groups.py::TestDecorator::test_wrap_and_unwrap_deprecation[True-False-residues] PASSED [ 27%] 561s testsuite/MDAnalysisTests/core/test_groups.py::TestDecorator::test_wrap_and_unwrap_deprecation[True-False-group] PASSED [ 27%] 561s testsuite/MDAnalysisTests/core/test_groups.py::TestDecorator::test_wrap_and_unwrap_deprecation[True-False-segments] PASSED [ 27%] 561s testsuite/MDAnalysisTests/core/test_groups.py::TestDecorator::test_wrap_and_unwrap_deprecation[False-True-fragments] PASSED [ 27%] 561s testsuite/MDAnalysisTests/core/test_groups.py::TestDecorator::test_wrap_and_unwrap_deprecation[False-True-molecules] PASSED [ 27%] 561s testsuite/MDAnalysisTests/core/test_groups.py::TestDecorator::test_wrap_and_unwrap_deprecation[False-True-residues] PASSED [ 27%] 561s testsuite/MDAnalysisTests/core/test_groups.py::TestDecorator::test_wrap_and_unwrap_deprecation[False-True-group] PASSED [ 27%] 561s testsuite/MDAnalysisTests/core/test_groups.py::TestDecorator::test_wrap_and_unwrap_deprecation[False-True-segments] PASSED [ 27%] 561s testsuite/MDAnalysisTests/core/test_groups.py::TestDecorator::test_wrap_and_unwrap_deprecation[False-False-fragments] PASSED [ 27%] 561s testsuite/MDAnalysisTests/core/test_groups.py::TestDecorator::test_wrap_and_unwrap_deprecation[False-False-molecules] PASSED [ 27%] 561s testsuite/MDAnalysisTests/core/test_groups.py::TestDecorator::test_wrap_and_unwrap_deprecation[False-False-residues] PASSED [ 27%] 561s testsuite/MDAnalysisTests/core/test_groups.py::TestDecorator::test_wrap_and_unwrap_deprecation[False-False-group] PASSED [ 27%] 561s testsuite/MDAnalysisTests/core/test_groups.py::TestDecorator::test_wrap_and_unwrap_deprecation[False-False-segments] PASSED [ 27%] 561s testsuite/MDAnalysisTests/core/test_groups.py::TestDecorator::test_wrap_and_unwrap[True-True-fragments] PASSED [ 27%] 561s testsuite/MDAnalysisTests/core/test_groups.py::TestDecorator::test_wrap_and_unwrap[True-True-molecules] PASSED [ 27%] 561s testsuite/MDAnalysisTests/core/test_groups.py::TestDecorator::test_wrap_and_unwrap[True-True-residues] PASSED [ 27%] 561s testsuite/MDAnalysisTests/core/test_groups.py::TestDecorator::test_wrap_and_unwrap[True-True-group] PASSED [ 27%] 561s testsuite/MDAnalysisTests/core/test_groups.py::TestDecorator::test_wrap_and_unwrap[True-True-segments] PASSED [ 27%] 561s testsuite/MDAnalysisTests/core/test_groups.py::TestDecorator::test_wrap_and_unwrap[True-False-fragments] PASSED [ 27%] 561s testsuite/MDAnalysisTests/core/test_groups.py::TestDecorator::test_wrap_and_unwrap[True-False-molecules] PASSED [ 27%] 561s testsuite/MDAnalysisTests/core/test_groups.py::TestDecorator::test_wrap_and_unwrap[True-False-residues] PASSED [ 27%] 561s testsuite/MDAnalysisTests/core/test_groups.py::TestDecorator::test_wrap_and_unwrap[True-False-group] PASSED [ 27%] 561s testsuite/MDAnalysisTests/core/test_groups.py::TestDecorator::test_wrap_and_unwrap[True-False-segments] PASSED [ 27%] 561s testsuite/MDAnalysisTests/core/test_groups.py::TestDecorator::test_wrap_and_unwrap[False-True-fragments] PASSED [ 27%] 561s testsuite/MDAnalysisTests/core/test_groups.py::TestDecorator::test_wrap_and_unwrap[False-True-molecules] PASSED [ 27%] 561s testsuite/MDAnalysisTests/core/test_groups.py::TestDecorator::test_wrap_and_unwrap[False-True-residues] PASSED [ 27%] 561s testsuite/MDAnalysisTests/core/test_groups.py::TestDecorator::test_wrap_and_unwrap[False-True-group] PASSED [ 27%] 561s testsuite/MDAnalysisTests/core/test_groups.py::TestDecorator::test_wrap_and_unwrap[False-True-segments] PASSED [ 27%] 561s testsuite/MDAnalysisTests/core/test_groups.py::TestDecorator::test_wrap_and_unwrap[False-False-fragments] PASSED [ 27%] 561s testsuite/MDAnalysisTests/core/test_groups.py::TestDecorator::test_wrap_and_unwrap[False-False-molecules] PASSED [ 27%] 561s testsuite/MDAnalysisTests/core/test_groups.py::TestDecorator::test_wrap_and_unwrap[False-False-residues] PASSED [ 27%] 561s testsuite/MDAnalysisTests/core/test_groups.py::TestDecorator::test_wrap_and_unwrap[False-False-group] PASSED [ 27%] 561s testsuite/MDAnalysisTests/core/test_groups.py::TestDecorator::test_wrap_and_unwrap[False-False-segments] PASSED [ 27%] 561s testsuite/MDAnalysisTests/core/test_groups.py::TestGetConnectionsAtoms::test_connection_from_atom_not_outside[bonds] PASSED [ 27%] 562s testsuite/MDAnalysisTests/core/test_groups.py::TestGetConnectionsAtoms::test_connection_from_atom_not_outside[angles] PASSED [ 27%] 562s testsuite/MDAnalysisTests/core/test_groups.py::TestGetConnectionsAtoms::test_connection_from_atom_not_outside[dihedrals] PASSED [ 27%] 563s testsuite/MDAnalysisTests/core/test_groups.py::TestGetConnectionsAtoms::test_connection_from_atom_not_outside[impropers] PASSED [ 27%] 563s testsuite/MDAnalysisTests/core/test_groups.py::TestGetConnectionsAtoms::test_connection_from_atom_outside[bonds-1] PASSED [ 27%] 564s testsuite/MDAnalysisTests/core/test_groups.py::TestGetConnectionsAtoms::test_connection_from_atom_outside[angles-3] PASSED [ 27%] 564s testsuite/MDAnalysisTests/core/test_groups.py::TestGetConnectionsAtoms::test_connection_from_atom_outside[dihedrals-4] PASSED [ 27%] 565s testsuite/MDAnalysisTests/core/test_groups.py::TestGetConnectionsAtoms::test_connection_from_atoms_not_outside[bonds-9] PASSED [ 27%] 565s testsuite/MDAnalysisTests/core/test_groups.py::TestGetConnectionsAtoms::test_connection_from_atoms_not_outside[angles-15] PASSED [ 27%] 566s testsuite/MDAnalysisTests/core/test_groups.py::TestGetConnectionsAtoms::test_connection_from_atoms_not_outside[dihedrals-12] PASSED [ 27%] 566s testsuite/MDAnalysisTests/core/test_groups.py::TestGetConnectionsAtoms::test_connection_from_atoms_outside[bonds-13] PASSED [ 27%] 567s testsuite/MDAnalysisTests/core/test_groups.py::TestGetConnectionsAtoms::test_connection_from_atoms_outside[angles-27] PASSED [ 27%] 567s testsuite/MDAnalysisTests/core/test_groups.py::TestGetConnectionsAtoms::test_connection_from_atoms_outside[dihedrals-38] PASSED [ 27%] 567s testsuite/MDAnalysisTests/core/test_groups.py::TestGetConnectionsAtoms::test_invalid_connection_error PASSED [ 27%] 568s testsuite/MDAnalysisTests/core/test_groups.py::TestGetConnectionsAtoms::test_get_empty_group[True] PASSED [ 27%] 568s testsuite/MDAnalysisTests/core/test_groups.py::TestGetConnectionsAtoms::test_get_empty_group[False] PASSED [ 27%] 569s testsuite/MDAnalysisTests/core/test_groups.py::TestGetConnectionsResidues::test_connection_from_res_not_outside[bonds-9] PASSED [ 27%] 569s testsuite/MDAnalysisTests/core/test_groups.py::TestGetConnectionsResidues::test_connection_from_res_not_outside[angles-14] PASSED [ 27%] 570s testsuite/MDAnalysisTests/core/test_groups.py::TestGetConnectionsResidues::test_connection_from_res_not_outside[dihedrals-9] PASSED [ 27%] 570s testsuite/MDAnalysisTests/core/test_groups.py::TestGetConnectionsResidues::test_connection_from_res_not_outside[impropers-0] PASSED [ 27%] 571s testsuite/MDAnalysisTests/core/test_groups.py::TestGetConnectionsResidues::test_connection_from_res_outside[bonds-11] PASSED [ 27%] 571s testsuite/MDAnalysisTests/core/test_groups.py::TestGetConnectionsResidues::test_connection_from_res_outside[angles-22] PASSED [ 27%] 572s testsuite/MDAnalysisTests/core/test_groups.py::TestGetConnectionsResidues::test_connection_from_res_outside[dihedrals-27] PASSED [ 27%] 572s testsuite/MDAnalysisTests/core/test_groups.py::TestGetConnectionsResidues::test_connection_from_res_outside[impropers-0] PASSED [ 27%] 573s testsuite/MDAnalysisTests/core/test_groups.py::TestGetConnectionsResidues::test_connection_from_residues_not_outside[bonds-157] PASSED [ 27%] 573s testsuite/MDAnalysisTests/core/test_groups.py::TestGetConnectionsResidues::test_connection_from_residues_not_outside[angles-290] PASSED [ 27%] 574s testsuite/MDAnalysisTests/core/test_groups.py::TestGetConnectionsResidues::test_connection_from_residues_not_outside[dihedrals-351] PASSED [ 27%] 574s testsuite/MDAnalysisTests/core/test_groups.py::TestGetConnectionsResidues::test_connection_from_residues_outside[bonds-158] PASSED [ 27%] 575s testsuite/MDAnalysisTests/core/test_groups.py::TestGetConnectionsResidues::test_connection_from_residues_outside[angles-294] PASSED [ 27%] 575s testsuite/MDAnalysisTests/core/test_groups.py::TestGetConnectionsResidues::test_connection_from_residues_outside[dihedrals-360] PASSED [ 27%] 576s testsuite/MDAnalysisTests/core/test_groups.py::TestGetConnectionsResidues::test_invalid_connection_error PASSED [ 27%] 576s testsuite/MDAnalysisTests/core/test_groups.py::TestGetConnectionsResidues::test_get_empty_group[True] PASSED [ 27%] 576s testsuite/MDAnalysisTests/core/test_groups.py::TestGetConnectionsResidues::test_get_empty_group[False] PASSED [ 27%] 577s testsuite/MDAnalysisTests/core/test_groups.py::test_topologygroup_gets_connections_inside[intra_bonds-9] PASSED [ 27%] 577s testsuite/MDAnalysisTests/core/test_groups.py::test_topologygroup_gets_connections_inside[intra_angles-15] PASSED [ 27%] 578s testsuite/MDAnalysisTests/core/test_groups.py::test_topologygroup_gets_connections_inside[intra_dihedrals-12] PASSED [ 27%] 578s testsuite/MDAnalysisTests/core/test_groups.py::test_topologygroup_gets_connections_outside[bonds-13] PASSED [ 27%] 578s testsuite/MDAnalysisTests/core/test_groups.py::test_topologygroup_gets_connections_outside[angles-27] PASSED [ 27%] 579s testsuite/MDAnalysisTests/core/test_groups.py::test_topologygroup_gets_connections_outside[dihedrals-38] PASSED [ 27%] 579s testsuite/MDAnalysisTests/core/test_index_dtype.py::test_ag_ix PASSED [ 27%] 579s testsuite/MDAnalysisTests/core/test_index_dtype.py::test_rg_ix PASSED [ 27%] 579s testsuite/MDAnalysisTests/core/test_index_dtype.py::test_sg_ix PASSED [ 27%] 579s testsuite/MDAnalysisTests/core/test_index_dtype.py::test_atom_ix_array PASSED [ 27%] 579s testsuite/MDAnalysisTests/core/test_index_dtype.py::test_residue_ix_array PASSED [ 27%] 579s testsuite/MDAnalysisTests/core/test_index_dtype.py::test_segment_ix_array PASSED [ 27%] 579s testsuite/MDAnalysisTests/core/test_index_dtype.py::test_atomgroup_indices PASSED [ 27%] 579s testsuite/MDAnalysisTests/core/test_index_dtype.py::test_atomgroup_residue_upshift PASSED [ 27%] 579s testsuite/MDAnalysisTests/core/test_index_dtype.py::test_atomgroup_segment_upshift PASSED [ 27%] 579s testsuite/MDAnalysisTests/core/test_index_dtype.py::test_residuegroup_atom_downshift PASSED [ 27%] 579s testsuite/MDAnalysisTests/core/test_index_dtype.py::test_residuegroup_resindices PASSED [ 27%] 579s testsuite/MDAnalysisTests/core/test_index_dtype.py::test_residuegroup_segment_upshift PASSED [ 27%] 579s testsuite/MDAnalysisTests/core/test_index_dtype.py::test_segmentgroup_atom_downshift PASSED [ 27%] 579s testsuite/MDAnalysisTests/core/test_index_dtype.py::test_segmentgroup_residue_downshift PASSED [ 27%] 579s testsuite/MDAnalysisTests/core/test_index_dtype.py::test_segmentgroup_segindices PASSED [ 27%] 579s testsuite/MDAnalysisTests/core/test_requires.py::TestRequires::test_requires_failure_singular PASSED [ 27%] 579s testsuite/MDAnalysisTests/core/test_requires.py::TestRequires::test_requires_failure_multiple PASSED [ 28%] 579s testsuite/MDAnalysisTests/core/test_requires.py::TestRequires::test_requires_success PASSED [ 28%] 579s testsuite/MDAnalysisTests/core/test_requires.py::TestRequires::test_failure_errormessage PASSED [ 28%] 579s testsuite/MDAnalysisTests/core/test_residue.py::test_type PASSED [ 28%] 579s testsuite/MDAnalysisTests/core/test_residue.py::test_index PASSED [ 28%] 579s testsuite/MDAnalysisTests/core/test_residue.py::test_atom_order PASSED [ 28%] 579s testsuite/MDAnalysisTests/core/test_residue.py::test_residue_pickle PASSED [ 28%] 579s testsuite/MDAnalysisTests/core/test_residuegroup.py::test_sequence_import_error SKIPPED [ 28%] 579s testsuite/MDAnalysisTests/core/test_residuegroup.py::TestSequence::test_string PASSED [ 28%] 579s testsuite/MDAnalysisTests/core/test_residuegroup.py::TestSequence::test_SeqRecord PASSED [ 28%] 579s testsuite/MDAnalysisTests/core/test_residuegroup.py::TestSequence::test_SeqRecord_default PASSED [ 28%] 579s testsuite/MDAnalysisTests/core/test_residuegroup.py::TestSequence::test_Seq PASSED [ 28%] 579s testsuite/MDAnalysisTests/core/test_residuegroup.py::TestSequence::test_nonIUPACresname_VE PASSED [ 28%] 580s testsuite/MDAnalysisTests/core/test_residuegroup.py::TestSequence::test_format_TE PASSED [ 28%] 580s testsuite/MDAnalysisTests/core/test_residuegroup.py::TestResidueGroup::test_newResidueGroup PASSED [ 28%] 580s testsuite/MDAnalysisTests/core/test_residuegroup.py::TestResidueGroup::test_n_atoms PASSED [ 28%] 580s testsuite/MDAnalysisTests/core/test_residuegroup.py::TestResidueGroup::test_n_residues PASSED [ 28%] 580s testsuite/MDAnalysisTests/core/test_residuegroup.py::TestResidueGroup::test_resids_dim PASSED [ 28%] 580s testsuite/MDAnalysisTests/core/test_residuegroup.py::TestResidueGroup::test_resnums_dim PASSED [ 28%] 580s testsuite/MDAnalysisTests/core/test_residuegroup.py::TestResidueGroup::test_segids_dim PASSED [ 28%] 580s testsuite/MDAnalysisTests/core/test_residuegroup.py::TestResidueGroup::test_len PASSED [ 28%] 580s testsuite/MDAnalysisTests/core/test_residuegroup.py::TestResidueGroup::test_set_resids PASSED [ 28%] 580s testsuite/MDAnalysisTests/core/test_residuegroup.py::TestResidueGroup::test_set_resids_updates_self PASSED [ 28%] 580s testsuite/MDAnalysisTests/core/test_residuegroup.py::TestResidueGroup::test_set_resnum_single PASSED [ 28%] 580s testsuite/MDAnalysisTests/core/test_residuegroup.py::TestResidueGroup::test_set_resnum_many PASSED [ 28%] 580s testsuite/MDAnalysisTests/core/test_residuegroup.py::TestResidueGroup::test_set_resnum_ValueError PASSED [ 28%] 580s testsuite/MDAnalysisTests/core/test_residuegroup.py::TestResidueGroup::test_set_resname_single SKIPPED [ 28%] 580s testsuite/MDAnalysisTests/core/test_residuegroup.py::TestResidueGroup::test_set_resname_many SKIPPED [ 28%] 580s testsuite/MDAnalysisTests/core/test_residuegroup.py::TestResidueGroup::test_set_resname_ValueError SKIPPED [ 28%] 580s testsuite/MDAnalysisTests/core/test_residuegroup.py::TestResidueGroup::test_merge_residues SKIPPED [ 28%] 580s testsuite/MDAnalysisTests/core/test_residuegroup.py::TestResidueGroup::test_set_masses SKIPPED [ 28%] 580s testsuite/MDAnalysisTests/core/test_residuegroup.py::TestResidueGroup::test_atom_order PASSED [ 28%] 580s testsuite/MDAnalysisTests/core/test_residuegroup.py::TestResidueGroup::test_get_next_residue PASSED [ 28%] 581s testsuite/MDAnalysisTests/core/test_residuegroup.py::TestResidueGroup::test_get_prev_residue PASSED [ 28%] 581s testsuite/MDAnalysisTests/core/test_residuegroup.py::TestResidueGroup::test_residuegroup_pickle[name CA] PASSED [ 28%] 581s testsuite/MDAnalysisTests/core/test_residuegroup.py::TestResidueGroup::test_residuegroup_pickle[segid 4AKE] PASSED [ 28%] 581s testsuite/MDAnalysisTests/core/test_segment.py::TestSegment::test_type PASSED [ 28%] 581s testsuite/MDAnalysisTests/core/test_segment.py::TestSegment::test_index PASSED [ 28%] 581s testsuite/MDAnalysisTests/core/test_segment.py::TestSegment::test_slicing PASSED [ 28%] 581s testsuite/MDAnalysisTests/core/test_segment.py::TestSegment::test_advanced_slicing PASSED [ 28%] 581s testsuite/MDAnalysisTests/core/test_segment.py::TestSegment::test_atom_order PASSED [ 28%] 581s testsuite/MDAnalysisTests/core/test_segment.py::TestSegment::test_residue_pickle[1] PASSED [ 28%] 581s testsuite/MDAnalysisTests/core/test_segment.py::TestSegment::test_residue_pickle[-1] PASSED [ 28%] 581s testsuite/MDAnalysisTests/core/test_segmentgroup.py::test_newSegmentGroup PASSED [ 28%] 581s testsuite/MDAnalysisTests/core/test_segmentgroup.py::test_n_atoms PASSED [ 28%] 581s testsuite/MDAnalysisTests/core/test_segmentgroup.py::test_n_residues PASSED [ 28%] 581s testsuite/MDAnalysisTests/core/test_segmentgroup.py::test_resids_dim PASSED [ 28%] 581s testsuite/MDAnalysisTests/core/test_segmentgroup.py::test_resnums_dim PASSED [ 28%] 581s testsuite/MDAnalysisTests/core/test_segmentgroup.py::test_segids_dim PASSED [ 28%] 581s testsuite/MDAnalysisTests/core/test_segmentgroup.py::test_set_segids PASSED [ 28%] 582s testsuite/MDAnalysisTests/core/test_segmentgroup.py::test_set_segid_updates_ PASSED [ 28%] 582s testsuite/MDAnalysisTests/core/test_segmentgroup.py::test_set_segids_many PASSED [ 28%] 582s testsuite/MDAnalysisTests/core/test_segmentgroup.py::test_atom_order PASSED [ 28%] 582s testsuite/MDAnalysisTests/core/test_segmentgroup.py::test_segmentgroup_pickle PASSED [ 28%] 582s testsuite/MDAnalysisTests/core/test_topology.py::TestTransTable::test_a2r PASSED [ 28%] 582s testsuite/MDAnalysisTests/core/test_topology.py::TestTransTable::test_r2a_1d PASSED [ 28%] 582s testsuite/MDAnalysisTests/core/test_topology.py::TestTransTable::test_r2a_2d PASSED [ 28%] 582s testsuite/MDAnalysisTests/core/test_topology.py::TestTransTable::test_r2s PASSED [ 28%] 582s testsuite/MDAnalysisTests/core/test_topology.py::TestTransTable::test_s2r_1d PASSED [ 28%] 582s testsuite/MDAnalysisTests/core/test_topology.py::TestTransTable::test_s2r_2d PASSED [ 28%] 582s testsuite/MDAnalysisTests/core/test_topology.py::TestTransTable::test_s2a_1d PASSED [ 28%] 582s testsuite/MDAnalysisTests/core/test_topology.py::TestTransTable::test_s2a_2d PASSED [ 28%] 582s testsuite/MDAnalysisTests/core/test_topology.py::TestTransTable::test_move_atom_simple PASSED [ 28%] 582s testsuite/MDAnalysisTests/core/test_topology.py::TestTransTable::test_move_residue_simple PASSED [ 28%] 582s testsuite/MDAnalysisTests/core/test_topology.py::TestTransTable::test_lazy_building_RA PASSED [ 28%] 582s testsuite/MDAnalysisTests/core/test_topology.py::TestTransTable::test_lazy_building_SR PASSED [ 28%] 582s testsuite/MDAnalysisTests/core/test_topology.py::TestTransTable::test_serialization PASSED [ 28%] 582s testsuite/MDAnalysisTests/core/test_topology.py::TestLevelMoves::test_move_atom PASSED [ 28%] 582s testsuite/MDAnalysisTests/core/test_topology.py::TestLevelMoves::test_move_atomgroup_single_residue PASSED [ 28%] 582s testsuite/MDAnalysisTests/core/test_topology.py::TestLevelMoves::test_move_atomgroup_residuegroup PASSED [ 28%] 582s testsuite/MDAnalysisTests/core/test_topology.py::TestLevelMoves::test_move_atomgroup_residue_list PASSED [ 28%] 582s testsuite/MDAnalysisTests/core/test_topology.py::TestLevelMoves::test_move_atom_residuegroup_TE PASSED [ 28%] 582s testsuite/MDAnalysisTests/core/test_topology.py::TestLevelMoves::test_move_atom_residue_list_TE PASSED [ 28%] 582s testsuite/MDAnalysisTests/core/test_topology.py::TestLevelMoves::test_move_atomgroup_residuegroup_VE PASSED [ 28%] 582s testsuite/MDAnalysisTests/core/test_topology.py::TestLevelMoves::test_move_atomgroup_residue_list_VE PASSED [ 28%] 582s testsuite/MDAnalysisTests/core/test_topology.py::TestLevelMoves::test_move_atom_TE PASSED [ 28%] 582s testsuite/MDAnalysisTests/core/test_topology.py::TestLevelMoves::test_move_atomgroup_TE PASSED [ 28%] 582s testsuite/MDAnalysisTests/core/test_topology.py::TestLevelMoves::test_move_atomgroup_list_TE PASSED [ 28%] 582s testsuite/MDAnalysisTests/core/test_topology.py::TestLevelMoves::test_move_atom_segment_NIE PASSED [ 28%] 582s testsuite/MDAnalysisTests/core/test_topology.py::TestLevelMoves::test_move_atomgroup_segment_NIE PASSED [ 28%] 582s testsuite/MDAnalysisTests/core/test_topology.py::TestLevelMoves::test_move_residue PASSED [ 28%] 582s testsuite/MDAnalysisTests/core/test_topology.py::TestLevelMoves::test_move_residuegroup_single_segment PASSED [ 28%] 582s testsuite/MDAnalysisTests/core/test_topology.py::TestLevelMoves::test_move_residuegroup_segmentgroup PASSED [ 28%] 582s testsuite/MDAnalysisTests/core/test_topology.py::TestLevelMoves::test_move_residuegroup_segment_list PASSED [ 28%] 582s testsuite/MDAnalysisTests/core/test_topology.py::TestLevelMoves::test_move_residue_segmentgroup_TE PASSED [ 28%] 582s testsuite/MDAnalysisTests/core/test_topology.py::TestLevelMoves::test_move_residue_list_TE PASSED [ 28%] 582s testsuite/MDAnalysisTests/core/test_topology.py::TestLevelMoves::test_move_residuegroup_segmentgroup_VE PASSED [ 28%] 582s testsuite/MDAnalysisTests/core/test_topology.py::TestLevelMoves::test_move_residuegroup_list_VE PASSED [ 28%] 582s testsuite/MDAnalysisTests/core/test_topology.py::TestLevelMoves::test_move_residue_TE PASSED [ 28%] 582s testsuite/MDAnalysisTests/core/test_topology.py::TestLevelMoves::test_move_residuegroup_TE PASSED [ 28%] 582s testsuite/MDAnalysisTests/core/test_topology.py::TestLevelMoves::test_move_residuegroup_list_TE PASSED [ 28%] 582s testsuite/MDAnalysisTests/core/test_topology.py::TestDownshiftArrays::test_downshift_dtype_square PASSED [ 28%] 582s testsuite/MDAnalysisTests/core/test_topology.py::TestDownshiftArrays::test_downshift_dtype_ragged PASSED [ 28%] 582s testsuite/MDAnalysisTests/core/test_topology.py::TestDownshiftArrays::test_shape_square PASSED [ 28%] 582s testsuite/MDAnalysisTests/core/test_topology.py::TestDownshiftArrays::test_shape_ragged PASSED [ 28%] 582s testsuite/MDAnalysisTests/core/test_topology.py::TestDownshiftArrays::test_contents_square PASSED [ 28%] 582s testsuite/MDAnalysisTests/core/test_topology.py::TestDownshiftArrays::test_contents_ragged PASSED [ 28%] 582s testsuite/MDAnalysisTests/core/test_topology.py::TestDownshiftArrays::test_missing_intra_values PASSED [ 28%] 582s testsuite/MDAnalysisTests/core/test_topology.py::TestDownshiftArrays::test_missing_intra_values_2 PASSED [ 28%] 582s testsuite/MDAnalysisTests/core/test_topology.py::TestDownshiftArrays::test_missing_end_values PASSED [ 28%] 582s testsuite/MDAnalysisTests/core/test_topology.py::TestDownshiftArrays::test_missing_end_values_2 PASSED [ 28%] 582s testsuite/MDAnalysisTests/core/test_topology.py::TestDownshiftArrays::test_missing_start_values_2 PASSED [ 28%] 582s testsuite/MDAnalysisTests/core/test_topology.py::TestAddingResidues::test_add_segment_no_attrs PASSED [ 28%] 582s testsuite/MDAnalysisTests/core/test_topology.py::TestAddingResidues::test_add_residue_no_attrs PASSED [ 28%] 582s testsuite/MDAnalysisTests/core/test_topology.py::TestAddingResidues::test_add_residue_no_attrs_one_segment PASSED [ 28%] 582s testsuite/MDAnalysisTests/core/test_topology.py::TestAddingResidues::test_add_Residue_ambiguous_segment_NDE PASSED [ 28%] 582s testsuite/MDAnalysisTests/core/test_topology.py::TestAddingResidues::test_add_Residue_missing_attr_NDE PASSED [ 28%] 582s testsuite/MDAnalysisTests/core/test_topology.py::TestAddingResidues::test_add_Residue_NDE_message PASSED [ 28%] 582s testsuite/MDAnalysisTests/core/test_topology.py::TestAddingResidues::test_add_Residue_NDE_message_2 PASSED [ 28%] 582s testsuite/MDAnalysisTests/core/test_topology.py::TestAddingResidues::test_add_Residue_with_attrs PASSED [ 28%] 582s testsuite/MDAnalysisTests/core/test_topology.py::TestAddingResidues::test_missing_attr_NDE_Segment PASSED [ 28%] 582s testsuite/MDAnalysisTests/core/test_topology.py::TestAddingResidues::test_add_Segment_NDE_message PASSED [ 28%] 582s testsuite/MDAnalysisTests/core/test_topology.py::TestAddingResidues::test_add_Segment_with_attr PASSED [ 28%] 582s testsuite/MDAnalysisTests/core/test_topology.py::TestTopologyGuessed::test_guessed PASSED [ 28%] 582s testsuite/MDAnalysisTests/core/test_topology.py::TestTopologyGuessed::test_read PASSED [ 28%] 582s testsuite/MDAnalysisTests/core/test_topology.py::TestTopologyCreation::test_make_topology_no_attrs PASSED [ 28%] 582s testsuite/MDAnalysisTests/core/test_topology.py::TestTopologyCreation::test_resindex_VE PASSED [ 28%] 582s testsuite/MDAnalysisTests/core/test_topology.py::TestTopologyCreation::test_segindex_VE PASSED [ 28%] 582s testsuite/MDAnalysisTests/core/test_topologyattrs.py::TestAtomAttr::test_len PASSED [ 28%] 582s testsuite/MDAnalysisTests/core/test_topologyattrs.py::TestAtomAttr::test_set_atom_VE PASSED [ 28%] 582s testsuite/MDAnalysisTests/core/test_topologyattrs.py::TestAtomAttr::test_get_atoms PASSED [ 28%] 582s testsuite/MDAnalysisTests/core/test_topologyattrs.py::TestAtomAttr::test_set_atoms_singular PASSED [ 28%] 582s testsuite/MDAnalysisTests/core/test_topologyattrs.py::TestAtomAttr::test_set_atoms_plural PASSED [ 28%] 582s testsuite/MDAnalysisTests/core/test_topologyattrs.py::TestAtomAttr::test_set_atoms_VE PASSED [ 28%] 582s testsuite/MDAnalysisTests/core/test_topologyattrs.py::TestAtomAttr::test_get_residues PASSED [ 28%] 582s testsuite/MDAnalysisTests/core/test_topologyattrs.py::TestAtomAttr::test_get_segments PASSED [ 28%] 582s testsuite/MDAnalysisTests/core/test_topologyattrs.py::TestAtomids::test_len PASSED [ 28%] 582s testsuite/MDAnalysisTests/core/test_topologyattrs.py::TestAtomids::test_set_atom_VE PASSED [ 28%] 582s testsuite/MDAnalysisTests/core/test_topologyattrs.py::TestAtomids::test_get_atoms PASSED [ 28%] 582s testsuite/MDAnalysisTests/core/test_topologyattrs.py::TestAtomids::test_set_atoms_singular PASSED [ 28%] 582s testsuite/MDAnalysisTests/core/test_topologyattrs.py::TestAtomids::test_set_atoms_plural PASSED [ 28%] 582s testsuite/MDAnalysisTests/core/test_topologyattrs.py::TestAtomids::test_set_atoms_VE PASSED [ 28%] 582s testsuite/MDAnalysisTests/core/test_topologyattrs.py::TestAtomids::test_get_residues PASSED [ 28%] 582s testsuite/MDAnalysisTests/core/test_topologyattrs.py::TestAtomids::test_get_segments PASSED [ 28%] 582s testsuite/MDAnalysisTests/core/test_topologyattrs.py::TestIndicesClasses::test_cant_set_atom_indices PASSED [ 28%] 582s testsuite/MDAnalysisTests/core/test_topologyattrs.py::TestIndicesClasses::test_cant_set_residue_indices PASSED [ 28%] 582s testsuite/MDAnalysisTests/core/test_topologyattrs.py::TestIndicesClasses::test_cant_set_segment_indices PASSED [ 28%] 582s testsuite/MDAnalysisTests/core/test_topologyattrs.py::TestAtomnames::test_len PASSED [ 28%] 582s testsuite/MDAnalysisTests/core/test_topologyattrs.py::TestAtomnames::test_set_atom_VE PASSED [ 28%] 582s testsuite/MDAnalysisTests/core/test_topologyattrs.py::TestAtomnames::test_get_atoms PASSED [ 28%] 582s testsuite/MDAnalysisTests/core/test_topologyattrs.py::TestAtomnames::test_set_atoms_singular PASSED [ 28%] 582s testsuite/MDAnalysisTests/core/test_topologyattrs.py::TestAtomnames::test_set_atoms_plural PASSED [ 28%] 582s testsuite/MDAnalysisTests/core/test_topologyattrs.py::TestAtomnames::test_set_atoms_VE PASSED [ 28%] 582s testsuite/MDAnalysisTests/core/test_topologyattrs.py::TestAtomnames::test_get_residues PASSED [ 28%] 582s testsuite/MDAnalysisTests/core/test_topologyattrs.py::TestAtomnames::test_get_segments PASSED [ 28%] 582s testsuite/MDAnalysisTests/core/test_topologyattrs.py::TestAtomnames::test_prev_emptyresidue PASSED [ 28%] 582s testsuite/MDAnalysisTests/core/test_topologyattrs.py::TestAtomnames::test_next_emptyresidue PASSED [ 28%] 582s testsuite/MDAnalysisTests/core/test_topologyattrs.py::TestMasses::test_len PASSED [ 28%] 582s testsuite/MDAnalysisTests/core/test_topologyattrs.py::TestMasses::test_set_atom_VE PASSED [ 28%] 582s testsuite/MDAnalysisTests/core/test_topologyattrs.py::TestMasses::test_get_atoms PASSED [ 28%] 582s testsuite/MDAnalysisTests/core/test_topologyattrs.py::TestMasses::test_set_atoms_singular PASSED [ 28%] 582s testsuite/MDAnalysisTests/core/test_topologyattrs.py::TestMasses::test_set_atoms_plural PASSED [ 28%] 582s testsuite/MDAnalysisTests/core/test_topologyattrs.py::TestMasses::test_set_atoms_VE PASSED [ 28%] 582s testsuite/MDAnalysisTests/core/test_topologyattrs.py::TestMasses::test_get_residues PASSED [ 28%] 582s testsuite/MDAnalysisTests/core/test_topologyattrs.py::TestMasses::test_get_segments PASSED [ 28%] 582s testsuite/MDAnalysisTests/core/test_topologyattrs.py::TestMasses::test_get_segment PASSED [ 28%] 582s testsuite/MDAnalysisTests/core/test_topologyattrs.py::TestCharges::test_len PASSED [ 28%] 582s testsuite/MDAnalysisTests/core/test_topologyattrs.py::TestCharges::test_set_atom_VE PASSED [ 28%] 582s testsuite/MDAnalysisTests/core/test_topologyattrs.py::TestCharges::test_get_atoms PASSED [ 28%] 582s testsuite/MDAnalysisTests/core/test_topologyattrs.py::TestCharges::test_set_atoms_singular PASSED [ 28%] 582s testsuite/MDAnalysisTests/core/test_topologyattrs.py::TestCharges::test_set_atoms_plural PASSED [ 28%] 582s testsuite/MDAnalysisTests/core/test_topologyattrs.py::TestCharges::test_set_atoms_VE PASSED [ 28%] 582s testsuite/MDAnalysisTests/core/test_topologyattrs.py::TestCharges::test_get_residues PASSED [ 28%] 582s testsuite/MDAnalysisTests/core/test_topologyattrs.py::TestCharges::test_get_segments PASSED [ 28%] 582s testsuite/MDAnalysisTests/core/test_topologyattrs.py::TestCharges::test_get_segment PASSED [ 28%] 582s testsuite/MDAnalysisTests/core/test_topologyattrs.py::TestResidueAttr::test_len PASSED [ 28%] 582s testsuite/MDAnalysisTests/core/test_topologyattrs.py::TestResidueAttr::test_set_residue_VE PASSED [ 28%] 582s testsuite/MDAnalysisTests/core/test_topologyattrs.py::TestResidueAttr::test_get_atoms PASSED [ 28%] 582s testsuite/MDAnalysisTests/core/test_topologyattrs.py::TestResidueAttr::test_get_atom PASSED [ 28%] 582s testsuite/MDAnalysisTests/core/test_topologyattrs.py::TestResidueAttr::test_get_residues PASSED [ 28%] 582s testsuite/MDAnalysisTests/core/test_topologyattrs.py::TestResidueAttr::test_set_residues_singular PASSED [ 28%] 582s testsuite/MDAnalysisTests/core/test_topologyattrs.py::TestResidueAttr::test_set_residues_plural PASSED [ 28%] 582s testsuite/MDAnalysisTests/core/test_topologyattrs.py::TestResidueAttr::test_set_residues_VE PASSED [ 28%] 582s testsuite/MDAnalysisTests/core/test_topologyattrs.py::TestResidueAttr::test_get_segments PASSED [ 28%] 582s testsuite/MDAnalysisTests/core/test_topologyattrs.py::TestResnames::test_len PASSED [ 28%] 582s testsuite/MDAnalysisTests/core/test_topologyattrs.py::TestResnames::test_set_residue_VE PASSED [ 28%] 582s testsuite/MDAnalysisTests/core/test_topologyattrs.py::TestResnames::test_get_atoms PASSED [ 28%] 582s testsuite/MDAnalysisTests/core/test_topologyattrs.py::TestResnames::test_get_atom PASSED [ 28%] 582s testsuite/MDAnalysisTests/core/test_topologyattrs.py::TestResnames::test_get_residues PASSED [ 28%] 582s testsuite/MDAnalysisTests/core/test_topologyattrs.py::TestResnames::test_set_residues_singular PASSED [ 28%] 582s testsuite/MDAnalysisTests/core/test_topologyattrs.py::TestResnames::test_set_residues_plural PASSED [ 28%] 582s testsuite/MDAnalysisTests/core/test_topologyattrs.py::TestResnames::test_set_residues_VE PASSED [ 28%] 582s testsuite/MDAnalysisTests/core/test_topologyattrs.py::TestResnames::test_get_segments PASSED [ 28%] 582s testsuite/MDAnalysisTests/core/test_topologyattrs.py::TestICodes::test_len PASSED [ 28%] 582s testsuite/MDAnalysisTests/core/test_topologyattrs.py::TestICodes::test_set_residue_VE PASSED [ 28%] 582s testsuite/MDAnalysisTests/core/test_topologyattrs.py::TestICodes::test_get_atoms PASSED [ 29%] 582s testsuite/MDAnalysisTests/core/test_topologyattrs.py::TestICodes::test_get_atom PASSED [ 29%] 582s testsuite/MDAnalysisTests/core/test_topologyattrs.py::TestICodes::test_get_residues PASSED [ 29%] 582s testsuite/MDAnalysisTests/core/test_topologyattrs.py::TestICodes::test_set_residues_singular PASSED [ 29%] 582s testsuite/MDAnalysisTests/core/test_topologyattrs.py::TestICodes::test_set_residues_plural PASSED [ 29%] 582s testsuite/MDAnalysisTests/core/test_topologyattrs.py::TestICodes::test_set_residues_VE PASSED [ 29%] 582s testsuite/MDAnalysisTests/core/test_topologyattrs.py::TestICodes::test_get_segments PASSED [ 29%] 582s testsuite/MDAnalysisTests/core/test_topologyattrs.py::TestResids::test_len PASSED [ 29%] 582s testsuite/MDAnalysisTests/core/test_topologyattrs.py::TestResids::test_set_residue_VE PASSED [ 29%] 582s testsuite/MDAnalysisTests/core/test_topologyattrs.py::TestResids::test_get_atoms PASSED [ 29%] 582s testsuite/MDAnalysisTests/core/test_topologyattrs.py::TestResids::test_get_atom PASSED [ 29%] 582s testsuite/MDAnalysisTests/core/test_topologyattrs.py::TestResids::test_get_residues PASSED [ 29%] 582s testsuite/MDAnalysisTests/core/test_topologyattrs.py::TestResids::test_set_residues_singular PASSED [ 29%] 582s testsuite/MDAnalysisTests/core/test_topologyattrs.py::TestResids::test_set_residues_plural PASSED [ 29%] 582s testsuite/MDAnalysisTests/core/test_topologyattrs.py::TestResids::test_set_residues_VE PASSED [ 29%] 582s testsuite/MDAnalysisTests/core/test_topologyattrs.py::TestResids::test_get_segments PASSED [ 29%] 582s testsuite/MDAnalysisTests/core/test_topologyattrs.py::TestResids::test_set_atoms XFAIL [ 29%] 582s testsuite/MDAnalysisTests/core/test_topologyattrs.py::TestResids::test_set_residues PASSED [ 29%] 582s testsuite/MDAnalysisTests/core/test_topologyattrs.py::TestSegmentAttr::test_len PASSED [ 29%] 582s testsuite/MDAnalysisTests/core/test_topologyattrs.py::TestSegmentAttr::test_set_segment_VE PASSED [ 29%] 582s testsuite/MDAnalysisTests/core/test_topologyattrs.py::TestSegmentAttr::test_get_atoms PASSED [ 29%] 582s testsuite/MDAnalysisTests/core/test_topologyattrs.py::TestSegmentAttr::test_get_residues PASSED [ 29%] 582s testsuite/MDAnalysisTests/core/test_topologyattrs.py::TestSegmentAttr::test_get_segments PASSED [ 29%] 582s testsuite/MDAnalysisTests/core/test_topologyattrs.py::TestSegmentAttr::test_set_segments_singular PASSED [ 29%] 582s testsuite/MDAnalysisTests/core/test_topologyattrs.py::TestSegmentAttr::test_set_segments_plural PASSED [ 29%] 582s testsuite/MDAnalysisTests/core/test_topologyattrs.py::TestSegmentAttr::test_set_segments_VE PASSED [ 29%] 582s testsuite/MDAnalysisTests/core/test_topologyattrs.py::TestAttr::test_principal_axes PASSED [ 29%] 582s testsuite/MDAnalysisTests/core/test_topologyattrs.py::TestAttr::test_principal_axes_handedness PASSED [ 29%] 582s testsuite/MDAnalysisTests/core/test_topologyattrs.py::TestAttr::test_align_principal_axes_with_self PASSED [ 29%] 583s testsuite/MDAnalysisTests/core/test_topologyattrs.py::TestAttr::test_align_principal_axes_with_x PASSED [ 29%] 583s testsuite/MDAnalysisTests/core/test_topologyattrs.py::TestCrossLevelAttributeSetting::test_set_crosslevel[0-names-0-level0] PASSED [ 29%] 583s testsuite/MDAnalysisTests/core/test_topologyattrs.py::TestCrossLevelAttributeSetting::test_set_crosslevel[0-names-1-level1] PASSED [ 29%] 583s testsuite/MDAnalysisTests/core/test_topologyattrs.py::TestCrossLevelAttributeSetting::test_set_crosslevel[0-names-2-level2] PASSED [ 29%] 583s testsuite/MDAnalysisTests/core/test_topologyattrs.py::TestCrossLevelAttributeSetting::test_set_crosslevel[1-resids-0-level0] PASSED [ 29%] 583s testsuite/MDAnalysisTests/core/test_topologyattrs.py::TestCrossLevelAttributeSetting::test_set_crosslevel[1-resids-1-level1] PASSED [ 29%] 583s testsuite/MDAnalysisTests/core/test_topologyattrs.py::TestCrossLevelAttributeSetting::test_set_crosslevel[1-resids-2-level2] PASSED [ 29%] 583s testsuite/MDAnalysisTests/core/test_topologyattrs.py::TestCrossLevelAttributeSetting::test_set_crosslevel[2-segids-0-level0] PASSED [ 29%] 583s testsuite/MDAnalysisTests/core/test_topologyattrs.py::TestCrossLevelAttributeSetting::test_set_crosslevel[2-segids-1-level1] PASSED [ 29%] 583s testsuite/MDAnalysisTests/core/test_topologyattrs.py::TestCrossLevelAttributeSetting::test_set_crosslevel[2-segids-2-level2] PASSED [ 29%] 583s testsuite/MDAnalysisTests/core/test_topologyattrs.py::TestRecordTypes::test_record_types_default PASSED [ 29%] 583s testsuite/MDAnalysisTests/core/test_topologyattrs.py::TestRecordTypes::test_encoding PASSED [ 29%] 583s testsuite/MDAnalysisTests/core/test_topologyattrs.py::TestRecordTypes::test_residue_record_types PASSED [ 29%] 583s testsuite/MDAnalysisTests/core/test_topologyattrs.py::TestRecordTypes::test_segment_record_types PASSED [ 29%] 583s testsuite/MDAnalysisTests/core/test_topologyattrs.py::test_static_typing PASSED [ 29%] 583s testsuite/MDAnalysisTests/core/test_topologyattrs.py::test_static_typing_from_empty PASSED [ 29%] 583s testsuite/MDAnalysisTests/core/test_topologyattrs.py::test_stub_transplant_methods[atoms-center_of_mass] PASSED [ 29%] 583s testsuite/MDAnalysisTests/core/test_topologyattrs.py::test_stub_transplant_methods[atoms-center_of_charge] PASSED [ 29%] 583s testsuite/MDAnalysisTests/core/test_topologyattrs.py::test_stub_transplant_methods[atoms-total_charge] PASSED [ 29%] 583s testsuite/MDAnalysisTests/core/test_topologyattrs.py::test_stub_transplant_methods[residues-total_charge] PASSED [ 29%] 583s testsuite/MDAnalysisTests/core/test_topologyattrs.py::test_stub_transplant_property[universe-models] PASSED [ 29%] 583s testsuite/MDAnalysisTests/core/test_topologyattrs.py::test_stub_transplant_property[atoms-n_fragments] PASSED [ 29%] 583s testsuite/MDAnalysisTests/core/test_topologyattrs.py::test_warn_selection_for_strange_dtype PASSED [ 29%] 583s testsuite/MDAnalysisTests/core/test_topologyattrs.py::TestDeprecateBFactor::test_deprecate_bfactors_get_group PASSED [ 29%] 583s testsuite/MDAnalysisTests/core/test_topologyattrs.py::TestDeprecateBFactor::test_deprecate_bfactors_get_atom PASSED [ 29%] 583s testsuite/MDAnalysisTests/core/test_topologyattrs.py::TestDeprecateBFactor::test_deprecate_bfactors_set_group PASSED [ 29%] 583s testsuite/MDAnalysisTests/core/test_topologyattrs.py::TestDeprecateBFactor::test_deprecate_bfactors_set_atom PASSED [ 29%] 583s testsuite/MDAnalysisTests/core/test_topologyattrs.py::TestDeprecateBFactor::test_deprecate_bfactor_sel PASSED [ 29%] 583s testsuite/MDAnalysisTests/core/test_topologyattrs.py::TestStringInterning::test_add_residue[ResA] PASSED [ 29%] 583s testsuite/MDAnalysisTests/core/test_topologyattrs.py::TestStringInterning::test_add_residue[ResB] PASSED [ 29%] 583s testsuite/MDAnalysisTests/core/test_topologyattrs.py::TestStringInterning::test_add_segment[SegA] PASSED [ 29%] 583s testsuite/MDAnalysisTests/core/test_topologyattrs.py::TestStringInterning::test_add_segment[SegB] PASSED [ 29%] 583s testsuite/MDAnalysisTests/core/test_topologyattrs.py::TestStringInterning::test_issue3437 PASSED [ 29%] 583s testsuite/MDAnalysisTests/core/test_topologyattrs.py::Testcenter_of_charge::test_coc[group] PASSED [ 29%] 583s testsuite/MDAnalysisTests/core/test_topologyattrs.py::Testcenter_of_charge::test_coc[segments] PASSED [ 29%] 583s testsuite/MDAnalysisTests/core/test_topologyattrs.py::Testcenter_of_charge::test_coc[residues] PASSED [ 29%] 583s testsuite/MDAnalysisTests/core/test_topologyattrs.py::Testcenter_of_charge::test_coc[molecules] PASSED [ 29%] 583s testsuite/MDAnalysisTests/core/test_topologyattrs.py::Testcenter_of_charge::test_coc[fragments] PASSED [ 29%] 583s testsuite/MDAnalysisTests/core/test_topologyattrs.py::Testcenter_of_charge::test_coc_wrap[group] PASSED [ 29%] 583s testsuite/MDAnalysisTests/core/test_topologyattrs.py::Testcenter_of_charge::test_coc_wrap[segments] PASSED [ 29%] 583s testsuite/MDAnalysisTests/core/test_topologyattrs.py::Testcenter_of_charge::test_coc_wrap[residues] PASSED [ 29%] 583s testsuite/MDAnalysisTests/core/test_topologyattrs.py::Testcenter_of_charge::test_coc_wrap[molecules] PASSED [ 29%] 583s testsuite/MDAnalysisTests/core/test_topologyattrs.py::Testcenter_of_charge::test_coc_wrap[fragments] PASSED [ 29%] 583s testsuite/MDAnalysisTests/core/test_topologyattrs.py::Testcenter_of_charge::test_coc_unwrap[group] PASSED [ 29%] 583s testsuite/MDAnalysisTests/core/test_topologyattrs.py::Testcenter_of_charge::test_coc_unwrap[segments] PASSED [ 29%] 583s testsuite/MDAnalysisTests/core/test_topologyattrs.py::Testcenter_of_charge::test_coc_unwrap[residues] PASSED [ 29%] 583s testsuite/MDAnalysisTests/core/test_topologyattrs.py::Testcenter_of_charge::test_coc_unwrap[molecules] PASSED [ 29%] 583s testsuite/MDAnalysisTests/core/test_topologyattrs.py::Testcenter_of_charge::test_coc_unwrap[fragments] PASSED [ 29%] 583s testsuite/MDAnalysisTests/core/test_topologyobjects.py::TestTopologyObjects::test_repr PASSED [ 29%] 583s testsuite/MDAnalysisTests/core/test_topologyobjects.py::TestTopologyObjects::test_eq PASSED [ 29%] 583s testsuite/MDAnalysisTests/core/test_topologyobjects.py::TestTopologyObjects::test_ne PASSED [ 29%] 583s testsuite/MDAnalysisTests/core/test_topologyobjects.py::TestTopologyObjects::test_gt PASSED [ 29%] 583s testsuite/MDAnalysisTests/core/test_topologyobjects.py::TestTopologyObjects::test_lt PASSED [ 29%] 583s testsuite/MDAnalysisTests/core/test_topologyobjects.py::TestTopologyObjects::test_len PASSED [ 29%] 583s testsuite/MDAnalysisTests/core/test_topologyobjects.py::TestTopologyObjects::test_hash PASSED [ 29%] 583s testsuite/MDAnalysisTests/core/test_topologyobjects.py::TestTopologyObjects::test_indices PASSED [ 29%] 583s testsuite/MDAnalysisTests/core/test_topologyobjects.py::TestTopologyObjects::test_partner PASSED [ 29%] 583s testsuite/MDAnalysisTests/core/test_topologyobjects.py::TestTopologyObjects::test_partner_VE PASSED [ 29%] 583s testsuite/MDAnalysisTests/core/test_topologyobjects.py::TestTopologyObjects::test_bondlength PASSED [ 29%] 583s testsuite/MDAnalysisTests/core/test_topologyobjects.py::TestTopologyObjects::test_bondrepr PASSED [ 29%] 583s testsuite/MDAnalysisTests/core/test_topologyobjects.py::TestTopologyObjects::test_angle PASSED [ 29%] 583s testsuite/MDAnalysisTests/core/test_topologyobjects.py::TestTopologyObjects::test_angle_repr PASSED [ 29%] 583s testsuite/MDAnalysisTests/core/test_topologyobjects.py::TestTopologyObjects::test_angle_180 PASSED [ 29%] 583s testsuite/MDAnalysisTests/core/test_topologyobjects.py::TestTopologyObjects::test_dihedral PASSED [ 29%] 583s testsuite/MDAnalysisTests/core/test_topologyobjects.py::TestTopologyObjects::test_dihedral_repr PASSED [ 29%] 583s testsuite/MDAnalysisTests/core/test_topologyobjects.py::TestTopologyObjects::test_improper PASSED [ 29%] 583s testsuite/MDAnalysisTests/core/test_topologyobjects.py::TestTopologyObjects::test_improper_repr PASSED [ 29%] 583s testsuite/MDAnalysisTests/core/test_topologyobjects.py::TestTopologyObjects::test_ureybradley_repr PASSED [ 29%] 583s testsuite/MDAnalysisTests/core/test_topologyobjects.py::TestTopologyObjects::test_ureybradley_repr_VE PASSED [ 29%] 583s testsuite/MDAnalysisTests/core/test_topologyobjects.py::TestTopologyObjects::test_ureybradley_partner PASSED [ 29%] 583s testsuite/MDAnalysisTests/core/test_topologyobjects.py::TestTopologyObjects::test_ureybradley_distance PASSED [ 29%] 583s testsuite/MDAnalysisTests/core/test_topologyobjects.py::TestTopologyObjects::test_cmap_repr PASSED [ 29%] 583s testsuite/MDAnalysisTests/core/test_topologyobjects.py::TestTopologyObjects::test_cmap_repr_VE PASSED [ 29%] 583s testsuite/MDAnalysisTests/core/test_topologyobjects.py::TestTopologyGroup::test_td_len PASSED [ 29%] 583s testsuite/MDAnalysisTests/core/test_topologyobjects.py::TestTopologyGroup::test_td_iter PASSED [ 29%] 583s testsuite/MDAnalysisTests/core/test_topologyobjects.py::TestTopologyGroup::test_td_keyerror PASSED [ 29%] 583s testsuite/MDAnalysisTests/core/test_topologyobjects.py::TestTopologyGroup::test_td_universe PASSED [ 29%] 583s testsuite/MDAnalysisTests/core/test_topologyobjects.py::TestTopologyGroup::test_bonds_types PASSED [ 29%] 583s testsuite/MDAnalysisTests/core/test_topologyobjects.py::TestTopologyGroup::test_bonds_contains PASSED [ 29%] 583s testsuite/MDAnalysisTests/core/test_topologyobjects.py::TestTopologyGroup::test_bond_uniqueness PASSED [ 29%] 583s testsuite/MDAnalysisTests/core/test_topologyobjects.py::TestTopologyGroup::test_bond_reversal PASSED [ 29%] 583s testsuite/MDAnalysisTests/core/test_topologyobjects.py::TestTopologyGroup::test_bond_no_reversal PASSED [ 29%] 584s testsuite/MDAnalysisTests/core/test_topologyobjects.py::TestTopologyGroup::test_angles_types PASSED [ 29%] 584s testsuite/MDAnalysisTests/core/test_topologyobjects.py::TestTopologyGroup::test_angles_contains PASSED [ 29%] 584s testsuite/MDAnalysisTests/core/test_topologyobjects.py::TestTopologyGroup::test_angles_uniqueness PASSED [ 29%] 584s testsuite/MDAnalysisTests/core/test_topologyobjects.py::TestTopologyGroup::test_angles_reversal PASSED [ 29%] 584s testsuite/MDAnalysisTests/core/test_topologyobjects.py::TestTopologyGroup::test_dihedrals_types PASSED [ 29%] 584s testsuite/MDAnalysisTests/core/test_topologyobjects.py::TestTopologyGroup::test_dihedrals_contains PASSED [ 29%] 584s testsuite/MDAnalysisTests/core/test_topologyobjects.py::TestTopologyGroup::test_dihedrals_uniqueness PASSED [ 29%] 584s testsuite/MDAnalysisTests/core/test_topologyobjects.py::TestTopologyGroup::test_dihedrals_reversal PASSED [ 29%] 584s testsuite/MDAnalysisTests/core/test_topologyobjects.py::TestTopologyGroup::test_bad_creation PASSED [ 29%] 584s testsuite/MDAnalysisTests/core/test_topologyobjects.py::TestTopologyGroup::test_bad_creation_TG PASSED [ 29%] 584s testsuite/MDAnalysisTests/core/test_topologyobjects.py::TestTopologyGroup::test_tg_creation_bad_btype PASSED [ 29%] 584s testsuite/MDAnalysisTests/core/test_topologyobjects.py::TestTopologyGroup::test_bond_tg_creation_notype PASSED [ 29%] 584s testsuite/MDAnalysisTests/core/test_topologyobjects.py::TestTopologyGroup::test_angle_tg_creation_notype PASSED [ 29%] 584s testsuite/MDAnalysisTests/core/test_topologyobjects.py::TestTopologyGroup::test_dihedral_tg_creation_notype PASSED [ 29%] 584s testsuite/MDAnalysisTests/core/test_topologyobjects.py::TestTopologyGroup::test_create_guessed_tg PASSED [ 29%] 584s testsuite/MDAnalysisTests/core/test_topologyobjects.py::TestTopologyGroup::test_create_guessed_tg_2 PASSED [ 29%] 584s testsuite/MDAnalysisTests/core/test_topologyobjects.py::TestTopologyGroup::test_TG_equality PASSED [ 29%] 584s testsuite/MDAnalysisTests/core/test_topologyobjects.py::TestTopologyGroup::test_create_TopologyGroup PASSED [ 29%] 584s testsuite/MDAnalysisTests/core/test_topologyobjects.py::TestTopologyGroup::test_TG_loose_intersection[bonds] PASSED [ 29%] 584s testsuite/MDAnalysisTests/core/test_topologyobjects.py::TestTopologyGroup::test_TG_loose_intersection[angles] PASSED [ 29%] 585s testsuite/MDAnalysisTests/core/test_topologyobjects.py::TestTopologyGroup::test_TG_loose_intersection[dihedrals] PASSED [ 29%] 585s testsuite/MDAnalysisTests/core/test_topologyobjects.py::TestTopologyGroup::test_TG_loose_intersection[impropers] PASSED [ 29%] 585s testsuite/MDAnalysisTests/core/test_topologyobjects.py::TestTopologyGroup::test_TG_strict_intersection PASSED [ 29%] 585s testsuite/MDAnalysisTests/core/test_topologyobjects.py::TestTopologyGroup::test_add_TopologyGroups PASSED [ 29%] 585s testsuite/MDAnalysisTests/core/test_topologyobjects.py::TestTopologyGroup::test_add_empty_to_TG PASSED [ 29%] 585s testsuite/MDAnalysisTests/core/test_topologyobjects.py::TestTopologyGroup::test_add_TO_to_empty_TG PASSED [ 29%] 585s testsuite/MDAnalysisTests/core/test_topologyobjects.py::TestTopologyGroup::test_add_TG_to_empty_TG PASSED [ 29%] 585s testsuite/MDAnalysisTests/core/test_topologyobjects.py::TestTopologyGroup::test_add_singleitem PASSED [ 29%] 585s testsuite/MDAnalysisTests/core/test_topologyobjects.py::TestTopologyGroup::test_add_wrongtype_TopologyGroup PASSED [ 29%] 585s testsuite/MDAnalysisTests/core/test_topologyobjects.py::TestTopologyGroup::test_bad_add_TopologyGroup PASSED [ 29%] 585s testsuite/MDAnalysisTests/core/test_topologyobjects.py::TestTopologyGroup::test_TG_getitem_single PASSED [ 29%] 585s testsuite/MDAnalysisTests/core/test_topologyobjects.py::TestTopologyGroup::test_TG_getitem_slice PASSED [ 29%] 585s testsuite/MDAnalysisTests/core/test_topologyobjects.py::TestTopologyGroup::test_TG_getitem_fancy PASSED [ 29%] 585s testsuite/MDAnalysisTests/core/test_topologyobjects.py::TestTopologyGroup::test_TG_getitem_bool PASSED [ 29%] 585s testsuite/MDAnalysisTests/core/test_topologyobjects.py::TestTopologyGroup::test_TG_getitem_bool_IE PASSED [ 29%] 585s testsuite/MDAnalysisTests/core/test_topologyobjects.py::TestTopologyGroup::test_atom1 PASSED [ 29%] 585s testsuite/MDAnalysisTests/core/test_topologyobjects.py::TestTopologyGroup::test_atom2 PASSED [ 29%] 585s testsuite/MDAnalysisTests/core/test_topologyobjects.py::TestTopologyGroup::test_atom3_IE PASSED [ 29%] 585s testsuite/MDAnalysisTests/core/test_topologyobjects.py::TestTopologyGroup::test_atom3 PASSED [ 29%] 585s testsuite/MDAnalysisTests/core/test_topologyobjects.py::TestTopologyGroup::test_atom4_IE PASSED [ 29%] 586s testsuite/MDAnalysisTests/core/test_topologyobjects.py::TestTopologyGroup::test_atom4 PASSED [ 29%] 586s testsuite/MDAnalysisTests/core/test_topologyobjects.py::TestTopologyGroup_Cython::test_wrong_type_bonds PASSED [ 29%] 586s testsuite/MDAnalysisTests/core/test_topologyobjects.py::TestTopologyGroup_Cython::test_right_type_bonds PASSED [ 29%] 586s testsuite/MDAnalysisTests/core/test_topologyobjects.py::TestTopologyGroup_Cython::test_wrong_type_angles PASSED [ 29%] 586s testsuite/MDAnalysisTests/core/test_topologyobjects.py::TestTopologyGroup_Cython::test_right_type_angles PASSED [ 29%] 586s testsuite/MDAnalysisTests/core/test_topologyobjects.py::TestTopologyGroup_Cython::test_wrong_type_dihedrals PASSED [ 29%] 586s testsuite/MDAnalysisTests/core/test_topologyobjects.py::TestTopologyGroup_Cython::test_right_type_dihedrals PASSED [ 29%] 586s testsuite/MDAnalysisTests/core/test_topologyobjects.py::TestTopologyGroup_Cython::test_right_type_impropers PASSED [ 29%] 586s testsuite/MDAnalysisTests/core/test_topologyobjects.py::test_bond_length_pbc PASSED [ 29%] 586s testsuite/MDAnalysisTests/core/test_topologyobjects.py::test_cross_universe_eq PASSED [ 29%] 586s testsuite/MDAnalysisTests/core/test_topologyobjects.py::test_zero_size_TG_indices_bonds PASSED [ 29%] 586s testsuite/MDAnalysisTests/core/test_topologyobjects.py::test_zero_size_TG_indices_angles PASSED [ 29%] 586s testsuite/MDAnalysisTests/core/test_universe.py::TestUniverseCreation::test_load PASSED [ 29%] 586s testsuite/MDAnalysisTests/core/test_universe.py::TestUniverseCreation::test_load_topology_stringio PASSED [ 29%] 586s testsuite/MDAnalysisTests/core/test_universe.py::TestUniverseCreation::test_load_trajectory_stringio PASSED [ 29%] 586s testsuite/MDAnalysisTests/core/test_universe.py::TestUniverseCreation::test_make_universe_stringio_no_format PASSED [ 29%] 586s testsuite/MDAnalysisTests/core/test_universe.py::TestUniverseCreation::test_Universe_no_trajectory_AE PASSED [ 29%] 586s testsuite/MDAnalysisTests/core/test_universe.py::TestUniverseCreation::test_Universe_topology_unrecognizedformat_VE PASSED [ 29%] 586s testsuite/MDAnalysisTests/core/test_universe.py::TestUniverseCreation::test_Universe_topology_unrecognizedformat_VE_msg PASSED [ 29%] 586s testsuite/MDAnalysisTests/core/test_universe.py::TestUniverseCreation::test_Universe_topology_IE PASSED [ 29%] 586s testsuite/MDAnalysisTests/core/test_universe.py::TestUniverseCreation::test_Universe_topology_IE_msg PASSED [ 29%] 586s testsuite/MDAnalysisTests/core/test_universe.py::TestUniverseCreation::test_Universe_filename_IE_msg PASSED [ 29%] 586s testsuite/MDAnalysisTests/core/test_universe.py::TestUniverseCreation::test_Universe_invalidfile_IE_msg PASSED [ 29%] 586s testsuite/MDAnalysisTests/core/test_universe.py::TestUniverseCreation::test_Universe_invalidpermissionfile_IE_msg PASSED [ 29%] 586s testsuite/MDAnalysisTests/core/test_universe.py::TestUniverseCreation::test_load_new_VE PASSED [ 29%] 586s testsuite/MDAnalysisTests/core/test_universe.py::TestUniverseCreation::test_load_new_memory_reader_success PASSED [ 29%] 587s testsuite/MDAnalysisTests/core/test_universe.py::TestUniverseCreation::test_load_new_memory_reader_fails PASSED [ 29%] 587s testsuite/MDAnalysisTests/core/test_universe.py::TestUniverseCreation::test_universe_kwargs PASSED [ 29%] 587s testsuite/MDAnalysisTests/core/test_universe.py::TestUniverseCreation::test_universe_topology_class_with_coords PASSED [ 29%] 587s testsuite/MDAnalysisTests/core/test_universe.py::TestUniverseCreation::test_universe_empty_ROMol SKIPPED [ 29%] 587s testsuite/MDAnalysisTests/core/test_universe.py::TestUniverseFromSmiles::test_default SKIPPED [ 29%] 587s testsuite/MDAnalysisTests/core/test_universe.py::TestUniverseFromSmiles::test_from_bad_smiles SKIPPED [ 29%] 587s testsuite/MDAnalysisTests/core/test_universe.py::TestUniverseFromSmiles::test_no_Hs SKIPPED [ 29%] 587s testsuite/MDAnalysisTests/core/test_universe.py::TestUniverseFromSmiles::test_gencoords_without_Hs_error SKIPPED [ 30%] 587s testsuite/MDAnalysisTests/core/test_universe.py::TestUniverseFromSmiles::test_generate_coordinates_numConfs SKIPPED [ 30%] 587s testsuite/MDAnalysisTests/core/test_universe.py::TestUniverseFromSmiles::test_rdkit_kwargs SKIPPED [ 30%] 587s testsuite/MDAnalysisTests/core/test_universe.py::TestUniverseFromSmiles::test_coordinates SKIPPED [ 30%] 587s testsuite/MDAnalysisTests/core/test_universe.py::TestUniverse::test_load_bad_topology PASSED [ 30%] 587s testsuite/MDAnalysisTests/core/test_universe.py::TestUniverse::test_load_new PASSED [ 30%] 587s testsuite/MDAnalysisTests/core/test_universe.py::TestUniverse::test_load_new_returns_Universe PASSED [ 30%] 587s testsuite/MDAnalysisTests/core/test_universe.py::TestUniverse::test_load_new_None_returns_Universe PASSED [ 30%] 587s testsuite/MDAnalysisTests/core/test_universe.py::TestUniverse::test_load_new_TypeError PASSED [ 30%] 587s testsuite/MDAnalysisTests/core/test_universe.py::TestUniverse::test_load_structure PASSED [ 30%] 587s testsuite/MDAnalysisTests/core/test_universe.py::TestUniverse::test_load_multiple_list PASSED [ 30%] 588s testsuite/MDAnalysisTests/core/test_universe.py::TestUniverse::test_load_multiple_args PASSED [ 30%] 588s testsuite/MDAnalysisTests/core/test_universe.py::TestUniverse::test_pickle PASSED [ 30%] 588s testsuite/MDAnalysisTests/core/test_universe.py::TestUniverse::test_set_dimensions[int] PASSED [ 30%] 588s testsuite/MDAnalysisTests/core/test_universe.py::TestUniverse::test_set_dimensions[float32] PASSED [ 30%] 588s testsuite/MDAnalysisTests/core/test_universe.py::TestUniverse::test_set_dimensions[float64] PASSED [ 30%] 588s testsuite/MDAnalysisTests/core/test_universe.py::TestTransformations::test_callable PASSED [ 30%] 588s testsuite/MDAnalysisTests/core/test_universe.py::TestTransformations::test_list PASSED [ 30%] 589s testsuite/MDAnalysisTests/core/test_universe.py::TestGuessMasses::test_universe_loading_no_warning PASSED [ 30%] 589s testsuite/MDAnalysisTests/core/test_universe.py::TestGuessBonds::test_universe_guess_bonds PASSED [ 30%] 589s testsuite/MDAnalysisTests/core/test_universe.py::TestGuessBonds::test_universe_guess_bonds_no_vdwradii PASSED [ 30%] 589s testsuite/MDAnalysisTests/core/test_universe.py::TestGuessBonds::test_universe_guess_bonds_with_vdwradii PASSED [ 30%] 589s testsuite/MDAnalysisTests/core/test_universe.py::TestGuessBonds::test_universe_guess_bonds_off PASSED [ 30%] 589s testsuite/MDAnalysisTests/core/test_universe.py::TestGuessBonds::test_universe_guess_bonds_arguments PASSED [ 30%] 589s testsuite/MDAnalysisTests/core/test_universe.py::TestGuessBonds::test_atomgroup_guess_bonds[0.55-0.1-2] PASSED [ 30%] 589s testsuite/MDAnalysisTests/core/test_universe.py::TestGuessBonds::test_atomgroup_guess_bonds[0.9-1.6-1] PASSED [ 30%] 589s testsuite/MDAnalysisTests/core/test_universe.py::TestGuessBonds::test_atomgroup_guess_bonds[0.5-0.2-2] PASSED [ 30%] 589s testsuite/MDAnalysisTests/core/test_universe.py::TestGuessBonds::test_atomgroup_guess_bonds[0.1-0.1-0] PASSED [ 30%] 589s testsuite/MDAnalysisTests/core/test_universe.py::TestGuessBonds::test_atomgroup_guess_bonds_no_vdwradii PASSED [ 30%] 589s testsuite/MDAnalysisTests/core/test_universe.py::TestGuessBonds::test_atomgroup_guess_bonds_with_vdwradii PASSED [ 30%] 589s testsuite/MDAnalysisTests/core/test_universe.py::TestGuessBonds::test_guess_bonds_periodicity PASSED [ 30%] 589s testsuite/MDAnalysisTests/core/test_universe.py::TestInMemoryUniverse::test_reader_w_timeseries PASSED [ 30%] 589s testsuite/MDAnalysisTests/core/test_universe.py::TestInMemoryUniverse::test_reader_wo_timeseries PASSED [ 30%] 589s testsuite/MDAnalysisTests/core/test_universe.py::TestInMemoryUniverse::test_reader_w_timeseries_frame_interval PASSED [ 30%] 590s testsuite/MDAnalysisTests/core/test_universe.py::TestInMemoryUniverse::test_reader_wo_timeseries_frame_interval PASSED [ 30%] 590s testsuite/MDAnalysisTests/core/test_universe.py::TestInMemoryUniverse::test_existing_universe PASSED [ 30%] 590s testsuite/MDAnalysisTests/core/test_universe.py::TestInMemoryUniverse::test_frame_interval_convention PASSED [ 30%] 590s testsuite/MDAnalysisTests/core/test_universe.py::TestInMemoryUniverse::test_slicing_with_start_stop PASSED [ 30%] 590s testsuite/MDAnalysisTests/core/test_universe.py::TestInMemoryUniverse::test_slicing_without_start PASSED [ 30%] 590s testsuite/MDAnalysisTests/core/test_universe.py::TestInMemoryUniverse::test_slicing_without_stop PASSED [ 30%] 590s testsuite/MDAnalysisTests/core/test_universe.py::TestInMemoryUniverse::test_slicing_step_without_start_stop PASSED [ 30%] 590s testsuite/MDAnalysisTests/core/test_universe.py::TestInMemoryUniverse::test_slicing_step_with_start_stop PASSED [ 30%] 590s testsuite/MDAnalysisTests/core/test_universe.py::TestInMemoryUniverse::test_slicing_step_dt PASSED [ 30%] 590s testsuite/MDAnalysisTests/core/test_universe.py::TestInMemoryUniverse::test_slicing_negative_start PASSED [ 30%] 590s testsuite/MDAnalysisTests/core/test_universe.py::TestInMemoryUniverse::test_slicing_negative_stop PASSED [ 30%] 590s testsuite/MDAnalysisTests/core/test_universe.py::TestInMemoryUniverse::test_transfer_to_memory_kwargs PASSED [ 30%] 590s testsuite/MDAnalysisTests/core/test_universe.py::TestInMemoryUniverse::test_in_memory_kwargs PASSED [ 30%] 590s testsuite/MDAnalysisTests/core/test_universe.py::TestCustomReaders::test_custom_reader PASSED [ 30%] 590s testsuite/MDAnalysisTests/core/test_universe.py::TestCustomReaders::test_custom_reader_singleframe PASSED [ 30%] 590s testsuite/MDAnalysisTests/core/test_universe.py::TestCustomReaders::test_custom_reader_singleframe_2 PASSED [ 30%] 590s testsuite/MDAnalysisTests/core/test_universe.py::TestCustomReaders::test_custom_parser PASSED [ 30%] 590s testsuite/MDAnalysisTests/core/test_universe.py::TestCustomReaders::test_custom_both PASSED [ 30%] 590s testsuite/MDAnalysisTests/core/test_universe.py::TestAddTopologyAttr::test_add_TA_fail PASSED [ 30%] 590s testsuite/MDAnalysisTests/core/test_universe.py::TestAddTopologyAttr::test_nodefault_fail PASSED [ 30%] 590s testsuite/MDAnalysisTests/core/test_universe.py::TestAddTopologyAttr::test_add_charges[charge-charges-0.0_0] PASSED [ 30%] 590s testsuite/MDAnalysisTests/core/test_universe.py::TestAddTopologyAttr::test_add_charges[charges-charges-0.0_0] PASSED [ 30%] 590s testsuite/MDAnalysisTests/core/test_universe.py::TestAddTopologyAttr::test_add_charges[name-names-] PASSED [ 30%] 590s testsuite/MDAnalysisTests/core/test_universe.py::TestAddTopologyAttr::test_add_charges[names-names-] PASSED [ 30%] 590s testsuite/MDAnalysisTests/core/test_universe.py::TestAddTopologyAttr::test_add_charges[type-types-] PASSED [ 30%] 590s testsuite/MDAnalysisTests/core/test_universe.py::TestAddTopologyAttr::test_add_charges[types-types-] PASSED [ 30%] 590s testsuite/MDAnalysisTests/core/test_universe.py::TestAddTopologyAttr::test_add_charges[element-elements-] PASSED [ 30%] 590s testsuite/MDAnalysisTests/core/test_universe.py::TestAddTopologyAttr::test_add_charges[elements-elements-] PASSED [ 30%] 590s testsuite/MDAnalysisTests/core/test_universe.py::TestAddTopologyAttr::test_add_charges[radius-radii-0.0] PASSED [ 30%] 590s testsuite/MDAnalysisTests/core/test_universe.py::TestAddTopologyAttr::test_add_charges[radii-radii-0.0] PASSED [ 30%] 590s testsuite/MDAnalysisTests/core/test_universe.py::TestAddTopologyAttr::test_add_charges[chainID-chainIDs-] PASSED [ 30%] 590s testsuite/MDAnalysisTests/core/test_universe.py::TestAddTopologyAttr::test_add_charges[chainIDs-chainIDs-] PASSED [ 30%] 590s testsuite/MDAnalysisTests/core/test_universe.py::TestAddTopologyAttr::test_add_charges[tempfactor-tempfactors-0.0] PASSED [ 30%] 590s testsuite/MDAnalysisTests/core/test_universe.py::TestAddTopologyAttr::test_add_charges[tempfactors-tempfactors-0.0] PASSED [ 30%] 590s testsuite/MDAnalysisTests/core/test_universe.py::TestAddTopologyAttr::test_add_charges[mass-masses-0.0] PASSED [ 30%] 590s testsuite/MDAnalysisTests/core/test_universe.py::TestAddTopologyAttr::test_add_charges[masses-masses-0.0] PASSED [ 30%] 590s testsuite/MDAnalysisTests/core/test_universe.py::TestAddTopologyAttr::test_add_charges[charge-charges-0.0_1] PASSED [ 30%] 590s testsuite/MDAnalysisTests/core/test_universe.py::TestAddTopologyAttr::test_add_charges[charges-charges-0.0_1] PASSED [ 30%] 590s testsuite/MDAnalysisTests/core/test_universe.py::TestAddTopologyAttr::test_add_charges[bfactor-bfactors-0.0] PASSED [ 30%] 590s testsuite/MDAnalysisTests/core/test_universe.py::TestAddTopologyAttr::test_add_charges[bfactors-bfactors-0.0] PASSED [ 30%] 590s testsuite/MDAnalysisTests/core/test_universe.py::TestAddTopologyAttr::test_add_charges[occupancy-occupancies-0.0] PASSED [ 30%] 590s testsuite/MDAnalysisTests/core/test_universe.py::TestAddTopologyAttr::test_add_charges[occupancies-occupancies-0.0] PASSED [ 30%] 590s testsuite/MDAnalysisTests/core/test_universe.py::TestAddTopologyAttr::test_add_charges[altLoc-altLocs-] PASSED [ 30%] 590s testsuite/MDAnalysisTests/core/test_universe.py::TestAddTopologyAttr::test_add_charges[altLocs-altLocs-] PASSED [ 30%] 590s testsuite/MDAnalysisTests/core/test_universe.py::TestAddTopologyAttr::test_add_charges[resid-resids-1] PASSED [ 30%] 590s testsuite/MDAnalysisTests/core/test_universe.py::TestAddTopologyAttr::test_add_charges[resids-resids-1] PASSED [ 30%] 590s testsuite/MDAnalysisTests/core/test_universe.py::TestAddTopologyAttr::test_add_charges[resname-resnames-] PASSED [ 30%] 590s testsuite/MDAnalysisTests/core/test_universe.py::TestAddTopologyAttr::test_add_charges[resnames-resnames-] PASSED [ 30%] 590s testsuite/MDAnalysisTests/core/test_universe.py::TestAddTopologyAttr::test_add_charges[resnum-resnums-1] PASSED [ 30%] 590s testsuite/MDAnalysisTests/core/test_universe.py::TestAddTopologyAttr::test_add_charges[resnums-resnums-1] PASSED [ 30%] 590s testsuite/MDAnalysisTests/core/test_universe.py::TestAddTopologyAttr::test_add_charges[icode-icodes-] PASSED [ 30%] 590s testsuite/MDAnalysisTests/core/test_universe.py::TestAddTopologyAttr::test_add_charges[icodes-icodes-] PASSED [ 30%] 590s testsuite/MDAnalysisTests/core/test_universe.py::TestAddTopologyAttr::test_add_charges[segid-segids-] PASSED [ 30%] 590s testsuite/MDAnalysisTests/core/test_universe.py::TestAddTopologyAttr::test_add_charges[segids-segids-] PASSED [ 30%] 590s testsuite/MDAnalysisTests/core/test_universe.py::TestAddTopologyAttr::test_add_connection[bonds-values0] PASSED [ 30%] 590s testsuite/MDAnalysisTests/core/test_universe.py::TestAddTopologyAttr::test_add_connection[bonds-values1] PASSED [ 30%] 590s testsuite/MDAnalysisTests/core/test_universe.py::TestAddTopologyAttr::test_add_connection[bonds-values2] PASSED [ 30%] 590s testsuite/MDAnalysisTests/core/test_universe.py::TestAddTopologyAttr::test_add_connection[angles-values3] PASSED [ 30%] 590s testsuite/MDAnalysisTests/core/test_universe.py::TestAddTopologyAttr::test_add_connection[dihedrals-values4] PASSED [ 30%] 590s testsuite/MDAnalysisTests/core/test_universe.py::TestAddTopologyAttr::test_add_connection[impropers-values5] PASSED [ 30%] 590s testsuite/MDAnalysisTests/core/test_universe.py::TestDelTopologyAttr::test_del_TA_fail PASSED [ 30%] 590s testsuite/MDAnalysisTests/core/test_universe.py::TestDelTopologyAttr::test_absent_fail PASSED [ 30%] 590s testsuite/MDAnalysisTests/core/test_universe.py::TestDelTopologyAttr::test_wrongtype_fail PASSED [ 30%] 590s testsuite/MDAnalysisTests/core/test_universe.py::TestDelTopologyAttr::test_del_str[charge-charges] PASSED [ 30%] 590s testsuite/MDAnalysisTests/core/test_universe.py::TestDelTopologyAttr::test_del_str[charges-charges] PASSED [ 30%] 590s testsuite/MDAnalysisTests/core/test_universe.py::TestDelTopologyAttr::test_del_str[bonds-bonds] PASSED [ 30%] 590s testsuite/MDAnalysisTests/core/test_universe.py::TestDelTopologyAttr::test_del_attr PASSED [ 30%] 590s testsuite/MDAnalysisTests/core/test_universe.py::TestDelTopologyAttr::test_del_transplants PASSED [ 30%] 590s testsuite/MDAnalysisTests/core/test_universe.py::TestDelTopologyAttr::test_del_attr_error PASSED [ 30%] 590s testsuite/MDAnalysisTests/core/test_universe.py::TestDelTopologyAttr::test_del_attr_from_ag PASSED [ 30%] 590s testsuite/MDAnalysisTests/core/test_universe.py::TestDelTopologyAttr::test_del_func_from_universe PASSED [ 30%] 590s testsuite/MDAnalysisTests/core/test_universe.py::TestAddTopologyObjects::test_add_indices_to_empty[bonds-values0] PASSED [ 30%] 590s testsuite/MDAnalysisTests/core/test_universe.py::TestAddTopologyObjects::test_add_indices_to_empty[angles-values1] PASSED [ 30%] 590s testsuite/MDAnalysisTests/core/test_universe.py::TestAddTopologyObjects::test_add_indices_to_empty[dihedrals-values2] PASSED [ 30%] 590s testsuite/MDAnalysisTests/core/test_universe.py::TestAddTopologyObjects::test_add_indices_to_empty[impropers-values3] PASSED [ 30%] 590s testsuite/MDAnalysisTests/core/test_universe.py::TestAddTopologyObjects::test_add_reversed_duplicates PASSED [ 30%] 590s testsuite/MDAnalysisTests/core/test_universe.py::TestAddTopologyObjects::test_add_indices_to_populated[bonds-values0] PASSED [ 30%] 591s testsuite/MDAnalysisTests/core/test_universe.py::TestAddTopologyObjects::test_add_indices_to_populated[angles-values1] PASSED [ 30%] 591s testsuite/MDAnalysisTests/core/test_universe.py::TestAddTopologyObjects::test_add_indices_to_populated[dihedrals-values2] PASSED [ 30%] 591s testsuite/MDAnalysisTests/core/test_universe.py::TestAddTopologyObjects::test_add_indices_to_populated[impropers-values3] PASSED [ 30%] 591s testsuite/MDAnalysisTests/core/test_universe.py::TestAddTopologyObjects::test_add_atomgroup_to_empty[bonds-values0] PASSED [ 30%] 591s testsuite/MDAnalysisTests/core/test_universe.py::TestAddTopologyObjects::test_add_atomgroup_to_empty[angles-values1] PASSED [ 30%] 591s testsuite/MDAnalysisTests/core/test_universe.py::TestAddTopologyObjects::test_add_atomgroup_to_empty[dihedrals-values2] PASSED [ 30%] 591s testsuite/MDAnalysisTests/core/test_universe.py::TestAddTopologyObjects::test_add_atomgroup_to_empty[impropers-values3] PASSED [ 30%] 591s testsuite/MDAnalysisTests/core/test_universe.py::TestAddTopologyObjects::test_add_atomgroup_to_populated[bonds-values0] PASSED [ 30%] 591s testsuite/MDAnalysisTests/core/test_universe.py::TestAddTopologyObjects::test_add_atomgroup_to_populated[angles-values1] PASSED [ 30%] 591s testsuite/MDAnalysisTests/core/test_universe.py::TestAddTopologyObjects::test_add_atomgroup_to_populated[dihedrals-values2] PASSED [ 30%] 591s testsuite/MDAnalysisTests/core/test_universe.py::TestAddTopologyObjects::test_add_atomgroup_to_populated[impropers-values3] PASSED [ 30%] 591s testsuite/MDAnalysisTests/core/test_universe.py::TestAddTopologyObjects::test_add_atomgroup_wrong_universe_error[bonds-values0] PASSED [ 30%] 591s testsuite/MDAnalysisTests/core/test_universe.py::TestAddTopologyObjects::test_add_atomgroup_wrong_universe_error[angles-values1] PASSED [ 30%] 591s testsuite/MDAnalysisTests/core/test_universe.py::TestAddTopologyObjects::test_add_atomgroup_wrong_universe_error[dihedrals-values2] PASSED [ 30%] 591s testsuite/MDAnalysisTests/core/test_universe.py::TestAddTopologyObjects::test_add_atomgroup_wrong_universe_error[impropers-values3] PASSED [ 30%] 592s testsuite/MDAnalysisTests/core/test_universe.py::TestAddTopologyObjects::test_add_topologyobjects_to_populated[bonds-values0] PASSED [ 30%] 592s testsuite/MDAnalysisTests/core/test_universe.py::TestAddTopologyObjects::test_add_topologyobjects_to_populated[angles-values1] PASSED [ 30%] 592s testsuite/MDAnalysisTests/core/test_universe.py::TestAddTopologyObjects::test_add_topologyobjects_to_populated[dihedrals-values2] PASSED [ 30%] 592s testsuite/MDAnalysisTests/core/test_universe.py::TestAddTopologyObjects::test_add_topologyobjects_to_populated[impropers-values3] PASSED [ 30%] 592s testsuite/MDAnalysisTests/core/test_universe.py::TestAddTopologyObjects::test_add_topologyobjects_wrong_universe_error[bonds-values0] PASSED [ 30%] 592s testsuite/MDAnalysisTests/core/test_universe.py::TestAddTopologyObjects::test_add_topologyobjects_wrong_universe_error[angles-values1] PASSED [ 30%] 592s testsuite/MDAnalysisTests/core/test_universe.py::TestAddTopologyObjects::test_add_topologyobjects_wrong_universe_error[dihedrals-values2] PASSED [ 30%] 592s testsuite/MDAnalysisTests/core/test_universe.py::TestAddTopologyObjects::test_add_topologyobjects_wrong_universe_error[impropers-values3] PASSED [ 30%] 593s testsuite/MDAnalysisTests/core/test_universe.py::TestAddTopologyObjects::test_add_topologygroups_to_populated[bonds-values0] PASSED [ 30%] 593s testsuite/MDAnalysisTests/core/test_universe.py::TestAddTopologyObjects::test_add_topologygroups_to_populated[angles-values1] PASSED [ 30%] 593s testsuite/MDAnalysisTests/core/test_universe.py::TestAddTopologyObjects::test_add_topologygroups_to_populated[dihedrals-values2] PASSED [ 30%] 593s testsuite/MDAnalysisTests/core/test_universe.py::TestAddTopologyObjects::test_add_topologygroups_to_populated[impropers-values3] PASSED [ 30%] 593s testsuite/MDAnalysisTests/core/test_universe.py::TestAddTopologyObjects::test_add_topologygroup_wrong_universe_error[bonds-values0] PASSED [ 30%] 593s testsuite/MDAnalysisTests/core/test_universe.py::TestAddTopologyObjects::test_add_topologygroup_wrong_universe_error[angles-values1] PASSED [ 30%] 593s testsuite/MDAnalysisTests/core/test_universe.py::TestAddTopologyObjects::test_add_topologygroup_wrong_universe_error[dihedrals-values2] PASSED [ 30%] 593s testsuite/MDAnalysisTests/core/test_universe.py::TestAddTopologyObjects::test_add_topologygroup_wrong_universe_error[impropers-values3] PASSED [ 30%] 594s testsuite/MDAnalysisTests/core/test_universe.py::TestAddTopologyObjects::test_add_topologygroup_different_universe[bonds-values0] PASSED [ 30%] 594s testsuite/MDAnalysisTests/core/test_universe.py::TestAddTopologyObjects::test_add_topologygroup_different_universe[angles-values1] PASSED [ 30%] 594s testsuite/MDAnalysisTests/core/test_universe.py::TestAddTopologyObjects::test_add_topologygroup_different_universe[dihedrals-values2] PASSED [ 30%] 594s testsuite/MDAnalysisTests/core/test_universe.py::TestAddTopologyObjects::test_add_topologygroup_different_universe[impropers-values3] PASSED [ 30%] 594s testsuite/MDAnalysisTests/core/test_universe.py::TestAddTopologyObjects::test_add_wrong_topologygroup_error[impropers-values0] PASSED [ 30%] 594s testsuite/MDAnalysisTests/core/test_universe.py::TestAddTopologyObjects::test_add_wrong_topologygroup_error[dihedrals-values1] PASSED [ 30%] 594s testsuite/MDAnalysisTests/core/test_universe.py::TestAddTopologyObjects::test_add_wrong_topologygroup_error[angles-values2] PASSED [ 30%] 594s testsuite/MDAnalysisTests/core/test_universe.py::TestAddTopologyObjects::test_add_wrong_topologygroup_error[bonds-values3] PASSED [ 30%] 594s testsuite/MDAnalysisTests/core/test_universe.py::TestAddTopologyObjects::test_add_nonexistent_indices_error[bonds-values0] PASSED [ 30%] 594s testsuite/MDAnalysisTests/core/test_universe.py::TestAddTopologyObjects::test_add_nonexistent_indices_error[angles-values1] PASSED [ 30%] 594s testsuite/MDAnalysisTests/core/test_universe.py::TestAddTopologyObjects::test_add_nonexistent_indices_error[dihedrals-values2] PASSED [ 30%] 594s testsuite/MDAnalysisTests/core/test_universe.py::TestAddTopologyObjects::test_add_nonexistent_indices_error[impropers-values3] PASSED [ 30%] 594s testsuite/MDAnalysisTests/core/test_universe.py::TestAddTopologyObjects::test_add_wrong_number_of_atoms_error[bonds-2] PASSED [ 30%] 595s testsuite/MDAnalysisTests/core/test_universe.py::TestAddTopologyObjects::test_add_wrong_number_of_atoms_error[angles-3] PASSED [ 30%] 595s testsuite/MDAnalysisTests/core/test_universe.py::TestAddTopologyObjects::test_add_wrong_number_of_atoms_error[dihedrals-4] PASSED [ 30%] 595s testsuite/MDAnalysisTests/core/test_universe.py::TestAddTopologyObjects::test_add_wrong_number_of_atoms_error[impropers-4] PASSED [ 30%] 595s testsuite/MDAnalysisTests/core/test_universe.py::TestAddTopologyObjects::test_add_bonds_refresh_fragments PASSED [ 30%] 595s testsuite/MDAnalysisTests/core/test_universe.py::TestAddTopologyObjects::test_roundtrip[bonds-values0] PASSED [ 30%] 595s testsuite/MDAnalysisTests/core/test_universe.py::TestAddTopologyObjects::test_roundtrip[angles-values1] PASSED [ 30%] 595s testsuite/MDAnalysisTests/core/test_universe.py::TestAddTopologyObjects::test_roundtrip[dihedrals-values2] PASSED [ 30%] 595s testsuite/MDAnalysisTests/core/test_universe.py::TestAddTopologyObjects::test_roundtrip[impropers-values3] PASSED [ 30%] 595s testsuite/MDAnalysisTests/core/test_universe.py::TestDeleteTopologyObjects::test_delete_valid_indices[bonds-values0] PASSED [ 30%] 595s testsuite/MDAnalysisTests/core/test_universe.py::TestDeleteTopologyObjects::test_delete_valid_indices[angles-values1] PASSED [ 30%] 595s testsuite/MDAnalysisTests/core/test_universe.py::TestDeleteTopologyObjects::test_delete_valid_indices[dihedrals-values2] PASSED [ 30%] 595s testsuite/MDAnalysisTests/core/test_universe.py::TestDeleteTopologyObjects::test_delete_valid_indices[impropers-values3] PASSED [ 30%] 595s testsuite/MDAnalysisTests/core/test_universe.py::TestDeleteTopologyObjects::test_delete_missing_indices[bonds-values0] PASSED [ 30%] 595s testsuite/MDAnalysisTests/core/test_universe.py::TestDeleteTopologyObjects::test_delete_missing_indices[angles-values1] PASSED [ 30%] 595s testsuite/MDAnalysisTests/core/test_universe.py::TestDeleteTopologyObjects::test_delete_missing_indices[dihedrals-values2] PASSED [ 30%] 595s testsuite/MDAnalysisTests/core/test_universe.py::TestDeleteTopologyObjects::test_delete_missing_indices[impropers-values3] PASSED [ 30%] 595s testsuite/MDAnalysisTests/core/test_universe.py::TestDeleteTopologyObjects::test_delete_valid_atomgroup[bonds-values0] PASSED [ 30%] 595s testsuite/MDAnalysisTests/core/test_universe.py::TestDeleteTopologyObjects::test_delete_valid_atomgroup[angles-values1] PASSED [ 30%] 595s testsuite/MDAnalysisTests/core/test_universe.py::TestDeleteTopologyObjects::test_delete_valid_atomgroup[dihedrals-values2] PASSED [ 30%] 595s testsuite/MDAnalysisTests/core/test_universe.py::TestDeleteTopologyObjects::test_delete_valid_atomgroup[impropers-values3] PASSED [ 30%] 595s testsuite/MDAnalysisTests/core/test_universe.py::TestDeleteTopologyObjects::test_delete_atomgroup_wrong_universe_error[bonds-values0] PASSED [ 30%] 595s testsuite/MDAnalysisTests/core/test_universe.py::TestDeleteTopologyObjects::test_delete_atomgroup_wrong_universe_error[angles-values1] PASSED [ 30%] 595s testsuite/MDAnalysisTests/core/test_universe.py::TestDeleteTopologyObjects::test_delete_atomgroup_wrong_universe_error[dihedrals-values2] PASSED [ 30%] 595s testsuite/MDAnalysisTests/core/test_universe.py::TestDeleteTopologyObjects::test_delete_atomgroup_wrong_universe_error[impropers-values3] PASSED [ 30%] 595s testsuite/MDAnalysisTests/core/test_universe.py::TestDeleteTopologyObjects::test_delete_missing_atomgroup[bonds-values0] PASSED [ 30%] 595s testsuite/MDAnalysisTests/core/test_universe.py::TestDeleteTopologyObjects::test_delete_missing_atomgroup[angles-values1] PASSED [ 30%] 595s testsuite/MDAnalysisTests/core/test_universe.py::TestDeleteTopologyObjects::test_delete_missing_atomgroup[dihedrals-values2] PASSED [ 30%] 595s testsuite/MDAnalysisTests/core/test_universe.py::TestDeleteTopologyObjects::test_delete_missing_atomgroup[impropers-values3] PASSED [ 30%] 595s testsuite/MDAnalysisTests/core/test_universe.py::TestDeleteTopologyObjects::test_delete_mixed_type[bonds-values0] PASSED [ 30%] 595s testsuite/MDAnalysisTests/core/test_universe.py::TestDeleteTopologyObjects::test_delete_mixed_type[angles-values1] PASSED [ 31%] 595s testsuite/MDAnalysisTests/core/test_universe.py::TestDeleteTopologyObjects::test_delete_mixed_type[dihedrals-values2] PASSED [ 31%] 595s testsuite/MDAnalysisTests/core/test_universe.py::TestDeleteTopologyObjects::test_delete_mixed_type[impropers-values3] PASSED [ 31%] 595s testsuite/MDAnalysisTests/core/test_universe.py::TestDeleteTopologyObjects::test_delete_valid_topologyobjects[bonds-values0] PASSED [ 31%] 595s testsuite/MDAnalysisTests/core/test_universe.py::TestDeleteTopologyObjects::test_delete_valid_topologyobjects[angles-values1] PASSED [ 31%] 595s testsuite/MDAnalysisTests/core/test_universe.py::TestDeleteTopologyObjects::test_delete_valid_topologyobjects[dihedrals-values2] PASSED [ 31%] 595s testsuite/MDAnalysisTests/core/test_universe.py::TestDeleteTopologyObjects::test_delete_valid_topologyobjects[impropers-values3] PASSED [ 31%] 595s testsuite/MDAnalysisTests/core/test_universe.py::TestDeleteTopologyObjects::test_delete_topologyobjects_wrong_universe[bonds-values0] PASSED [ 31%] 595s testsuite/MDAnalysisTests/core/test_universe.py::TestDeleteTopologyObjects::test_delete_topologyobjects_wrong_universe[angles-values1] PASSED [ 31%] 595s testsuite/MDAnalysisTests/core/test_universe.py::TestDeleteTopologyObjects::test_delete_topologyobjects_wrong_universe[dihedrals-values2] PASSED [ 31%] 595s testsuite/MDAnalysisTests/core/test_universe.py::TestDeleteTopologyObjects::test_delete_topologyobjects_wrong_universe[impropers-values3] PASSED [ 31%] 595s testsuite/MDAnalysisTests/core/test_universe.py::TestDeleteTopologyObjects::test_delete_valid_topologygroup[bonds-values0] PASSED [ 31%] 595s testsuite/MDAnalysisTests/core/test_universe.py::TestDeleteTopologyObjects::test_delete_valid_topologygroup[angles-values1] PASSED [ 31%] 595s testsuite/MDAnalysisTests/core/test_universe.py::TestDeleteTopologyObjects::test_delete_valid_topologygroup[dihedrals-values2] PASSED [ 31%] 595s testsuite/MDAnalysisTests/core/test_universe.py::TestDeleteTopologyObjects::test_delete_valid_topologygroup[impropers-values3] PASSED [ 31%] 595s testsuite/MDAnalysisTests/core/test_universe.py::TestDeleteTopologyObjects::test_delete_topologygroup_wrong_universe_error[bonds-values0] PASSED [ 31%] 595s testsuite/MDAnalysisTests/core/test_universe.py::TestDeleteTopologyObjects::test_delete_topologygroup_wrong_universe_error[angles-values1] PASSED [ 31%] 595s testsuite/MDAnalysisTests/core/test_universe.py::TestDeleteTopologyObjects::test_delete_topologygroup_wrong_universe_error[dihedrals-values2] PASSED [ 31%] 595s testsuite/MDAnalysisTests/core/test_universe.py::TestDeleteTopologyObjects::test_delete_topologygroup_wrong_universe_error[impropers-values3] PASSED [ 31%] 595s testsuite/MDAnalysisTests/core/test_universe.py::TestDeleteTopologyObjects::test_delete_topologygroup_different_universe[bonds-values0] PASSED [ 31%] 595s testsuite/MDAnalysisTests/core/test_universe.py::TestDeleteTopologyObjects::test_delete_topologygroup_different_universe[angles-values1] PASSED [ 31%] 595s testsuite/MDAnalysisTests/core/test_universe.py::TestDeleteTopologyObjects::test_delete_topologygroup_different_universe[dihedrals-values2] PASSED [ 31%] 595s testsuite/MDAnalysisTests/core/test_universe.py::TestDeleteTopologyObjects::test_delete_topologygroup_different_universe[impropers-values3] PASSED [ 31%] 595s testsuite/MDAnalysisTests/core/test_universe.py::TestDeleteTopologyObjects::test_delete_wrong_number_of_atoms_error[bonds-2] PASSED [ 31%] 595s testsuite/MDAnalysisTests/core/test_universe.py::TestDeleteTopologyObjects::test_delete_wrong_number_of_atoms_error[angles-3] PASSED [ 31%] 595s testsuite/MDAnalysisTests/core/test_universe.py::TestDeleteTopologyObjects::test_delete_wrong_number_of_atoms_error[dihedrals-4] PASSED [ 31%] 595s testsuite/MDAnalysisTests/core/test_universe.py::TestDeleteTopologyObjects::test_delete_wrong_number_of_atoms_error[impropers-4] PASSED [ 31%] 595s testsuite/MDAnalysisTests/core/test_universe.py::TestDeleteTopologyObjects::test_delete_missing_attr[bonds-values0] PASSED [ 31%] 595s testsuite/MDAnalysisTests/core/test_universe.py::TestDeleteTopologyObjects::test_delete_missing_attr[angles-values1] PASSED [ 31%] 595s testsuite/MDAnalysisTests/core/test_universe.py::TestDeleteTopologyObjects::test_delete_missing_attr[dihedrals-values2] PASSED [ 31%] 595s testsuite/MDAnalysisTests/core/test_universe.py::TestDeleteTopologyObjects::test_delete_missing_attr[impropers-values3] PASSED [ 31%] 595s testsuite/MDAnalysisTests/core/test_universe.py::TestDeleteTopologyObjects::test_delete_bonds_refresh_fragments PASSED [ 31%] 595s testsuite/MDAnalysisTests/core/test_universe.py::TestDeleteTopologyObjects::test_roundtrip[bonds-values0] PASSED [ 31%] 595s testsuite/MDAnalysisTests/core/test_universe.py::TestDeleteTopologyObjects::test_roundtrip[angles-values1] PASSED [ 31%] 595s testsuite/MDAnalysisTests/core/test_universe.py::TestDeleteTopologyObjects::test_roundtrip[dihedrals-values2] PASSED [ 31%] 595s testsuite/MDAnalysisTests/core/test_universe.py::TestDeleteTopologyObjects::test_roundtrip[impropers-values3] PASSED [ 31%] 595s testsuite/MDAnalysisTests/core/test_universe.py::TestAllCoordinatesKwarg::test_all_coordinates_length PASSED [ 31%] 596s testsuite/MDAnalysisTests/core/test_universe.py::TestAllCoordinatesKwarg::test_all_coordinates_frame PASSED [ 31%] 596s testsuite/MDAnalysisTests/core/test_universe.py::TestAllCoordinatesKwarg::test_second_frame PASSED [ 31%] 596s testsuite/MDAnalysisTests/core/test_universe.py::TestEmpty::test_empty PASSED [ 31%] 596s testsuite/MDAnalysisTests/core/test_universe.py::TestEmpty::test_empty_extra PASSED [ 31%] 596s testsuite/MDAnalysisTests/core/test_universe.py::TestEmpty::test_no_resindex_warning PASSED [ 31%] 596s testsuite/MDAnalysisTests/core/test_universe.py::TestEmpty::test_no_segindex_warning PASSED [ 31%] 596s testsuite/MDAnalysisTests/core/test_universe.py::TestEmpty::test_no_trivial_warning PASSED [ 31%] 596s testsuite/MDAnalysisTests/core/test_universe.py::TestEmpty::test_trajectory PASSED [ 31%] 596s testsuite/MDAnalysisTests/core/test_universe.py::TestEmpty::test_trajectory_multiple_frames PASSED [ 31%] 596s testsuite/MDAnalysisTests/core/test_universe.py::TestEmpty::test_trajectory_iteration PASSED [ 31%] 596s testsuite/MDAnalysisTests/core/test_universe.py::TestEmpty::test_velocities PASSED [ 31%] 596s testsuite/MDAnalysisTests/core/test_universe.py::TestEmpty::test_forces PASSED [ 31%] 596s testsuite/MDAnalysisTests/core/test_universe.py::TestEmpty::test_empty_no_atoms PASSED [ 31%] 596s testsuite/MDAnalysisTests/core/test_universe.py::TestEmpty::test_empty_creation_raises_error PASSED [ 31%] 596s testsuite/MDAnalysisTests/core/test_universe.py::test_deprecate_b_tempfactors PASSED [ 31%] 596s testsuite/MDAnalysisTests/core/test_universe.py::TestOnlyTopology::test_only_top PASSED [ 31%] 596s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_pass[False-com-fragments-atoms] PASSED [ 31%] 596s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_pass[False-com-fragments-residues] PASSED [ 31%] 596s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_pass[False-com-fragments-segments] PASSED [ 31%] 596s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_pass[False-com-molecules-atoms] PASSED [ 31%] 596s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_pass[False-com-molecules-residues] PASSED [ 31%] 596s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_pass[False-com-molecules-segments] PASSED [ 31%] 596s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_pass[False-com-residues-atoms] PASSED [ 31%] 596s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_pass[False-com-residues-residues] PASSED [ 31%] 596s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_pass[False-com-residues-segments] PASSED [ 31%] 596s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_pass[False-com-group-atoms] PASSED [ 31%] 596s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_pass[False-com-group-residues] PASSED [ 31%] 596s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_pass[False-com-group-segments] PASSED [ 31%] 596s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_pass[False-com-segments-atoms] PASSED [ 31%] 596s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_pass[False-com-segments-residues] PASSED [ 31%] 596s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_pass[False-com-segments-segments] PASSED [ 31%] 596s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_pass[False-cog-fragments-atoms] PASSED [ 31%] 596s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_pass[False-cog-fragments-residues] PASSED [ 31%] 596s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_pass[False-cog-fragments-segments] PASSED [ 31%] 596s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_pass[False-cog-molecules-atoms] PASSED [ 31%] 597s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_pass[False-cog-molecules-residues] PASSED [ 31%] 597s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_pass[False-cog-molecules-segments] PASSED [ 31%] 597s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_pass[False-cog-residues-atoms] PASSED [ 31%] 597s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_pass[False-cog-residues-residues] PASSED [ 31%] 597s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_pass[False-cog-residues-segments] PASSED [ 31%] 597s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_pass[False-cog-group-atoms] PASSED [ 31%] 597s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_pass[False-cog-group-residues] PASSED [ 31%] 597s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_pass[False-cog-group-segments] PASSED [ 31%] 597s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_pass[False-cog-segments-atoms] PASSED [ 31%] 597s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_pass[False-cog-segments-residues] PASSED [ 31%] 597s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_pass[False-cog-segments-segments] PASSED [ 31%] 597s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_pass[False-None-fragments-atoms] PASSED [ 31%] 597s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_pass[False-None-fragments-residues] PASSED [ 31%] 597s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_pass[False-None-fragments-segments] PASSED [ 31%] 597s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_pass[False-None-molecules-atoms] PASSED [ 31%] 597s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_pass[False-None-molecules-residues] PASSED [ 31%] 597s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_pass[False-None-molecules-segments] PASSED [ 31%] 597s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_pass[False-None-residues-atoms] PASSED [ 31%] 597s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_pass[False-None-residues-residues] PASSED [ 31%] 597s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_pass[False-None-residues-segments] PASSED [ 31%] 597s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_pass[False-None-group-atoms] PASSED [ 31%] 597s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_pass[False-None-group-residues] PASSED [ 31%] 597s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_pass[False-None-group-segments] PASSED [ 31%] 597s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_pass[False-None-segments-atoms] PASSED [ 31%] 597s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_pass[False-None-segments-residues] PASSED [ 31%] 597s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_pass[False-None-segments-segments] PASSED [ 31%] 597s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_pass[True-com-fragments-atoms] PASSED [ 31%] 597s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_pass[True-com-fragments-residues] PASSED [ 31%] 597s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_pass[True-com-fragments-segments] PASSED [ 31%] 597s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_pass[True-com-molecules-atoms] PASSED [ 31%] 597s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_pass[True-com-molecules-residues] PASSED [ 31%] 597s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_pass[True-com-molecules-segments] PASSED [ 31%] 597s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_pass[True-com-residues-atoms] PASSED [ 31%] 597s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_pass[True-com-residues-residues] PASSED [ 31%] 597s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_pass[True-com-residues-segments] PASSED [ 31%] 597s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_pass[True-com-group-atoms] PASSED [ 31%] 597s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_pass[True-com-group-residues] PASSED [ 31%] 597s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_pass[True-com-group-segments] PASSED [ 31%] 597s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_pass[True-com-segments-atoms] PASSED [ 31%] 597s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_pass[True-com-segments-residues] PASSED [ 31%] 597s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_pass[True-com-segments-segments] PASSED [ 31%] 597s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_pass[True-cog-fragments-atoms] PASSED [ 31%] 597s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_pass[True-cog-fragments-residues] PASSED [ 31%] 597s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_pass[True-cog-fragments-segments] PASSED [ 31%] 597s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_pass[True-cog-molecules-atoms] PASSED [ 31%] 597s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_pass[True-cog-molecules-residues] PASSED [ 31%] 597s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_pass[True-cog-molecules-segments] PASSED [ 31%] 597s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_pass[True-cog-residues-atoms] PASSED [ 31%] 597s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_pass[True-cog-residues-residues] PASSED [ 31%] 597s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_pass[True-cog-residues-segments] PASSED [ 31%] 597s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_pass[True-cog-group-atoms] PASSED [ 31%] 597s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_pass[True-cog-group-residues] PASSED [ 31%] 597s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_pass[True-cog-group-segments] PASSED [ 31%] 597s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_pass[True-cog-segments-atoms] PASSED [ 31%] 597s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_pass[True-cog-segments-residues] PASSED [ 31%] 597s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_pass[True-cog-segments-segments] PASSED [ 31%] 597s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_pass[True-None-fragments-atoms] PASSED [ 31%] 597s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_pass[True-None-fragments-residues] PASSED [ 31%] 597s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_pass[True-None-fragments-segments] PASSED [ 31%] 597s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_pass[True-None-molecules-atoms] PASSED [ 31%] 597s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_pass[True-None-molecules-residues] PASSED [ 31%] 597s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_pass[True-None-molecules-segments] PASSED [ 31%] 597s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_pass[True-None-residues-atoms] PASSED [ 31%] 597s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_pass[True-None-residues-residues] PASSED [ 31%] 597s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_pass[True-None-residues-segments] PASSED [ 31%] 597s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_pass[True-None-group-atoms] PASSED [ 31%] 597s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_pass[True-None-group-residues] PASSED [ 31%] 597s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_pass[True-None-group-segments] PASSED [ 31%] 597s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_pass[True-None-segments-atoms] PASSED [ 31%] 597s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_pass[True-None-segments-residues] PASSED [ 31%] 597s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_pass[True-None-segments-segments] PASSED [ 31%] 597s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_wrap_unwrap_cycle[False-com-fragments-atoms] PASSED [ 31%] 597s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_wrap_unwrap_cycle[False-com-fragments-residues] PASSED [ 31%] 597s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_wrap_unwrap_cycle[False-com-fragments-segments] PASSED [ 31%] 597s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_wrap_unwrap_cycle[False-com-molecules-atoms] PASSED [ 31%] 597s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_wrap_unwrap_cycle[False-com-molecules-residues] PASSED [ 31%] 597s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_wrap_unwrap_cycle[False-com-molecules-segments] PASSED [ 31%] 597s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_wrap_unwrap_cycle[False-com-residues-atoms] PASSED [ 31%] 597s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_wrap_unwrap_cycle[False-com-residues-residues] PASSED [ 31%] 597s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_wrap_unwrap_cycle[False-com-residues-segments] PASSED [ 31%] 597s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_wrap_unwrap_cycle[False-com-group-atoms] PASSED [ 31%] 597s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_wrap_unwrap_cycle[False-com-group-residues] PASSED [ 31%] 597s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_wrap_unwrap_cycle[False-com-group-segments] PASSED [ 31%] 597s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_wrap_unwrap_cycle[False-com-segments-atoms] PASSED [ 31%] 597s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_wrap_unwrap_cycle[False-com-segments-residues] PASSED [ 31%] 597s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_wrap_unwrap_cycle[False-com-segments-segments] PASSED [ 31%] 597s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_wrap_unwrap_cycle[False-cog-fragments-atoms] PASSED [ 31%] 597s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_wrap_unwrap_cycle[False-cog-fragments-residues] PASSED [ 31%] 597s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_wrap_unwrap_cycle[False-cog-fragments-segments] PASSED [ 31%] 597s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_wrap_unwrap_cycle[False-cog-molecules-atoms] PASSED [ 31%] 597s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_wrap_unwrap_cycle[False-cog-molecules-residues] PASSED [ 31%] 597s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_wrap_unwrap_cycle[False-cog-molecules-segments] PASSED [ 31%] 597s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_wrap_unwrap_cycle[False-cog-residues-atoms] PASSED [ 31%] 597s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_wrap_unwrap_cycle[False-cog-residues-residues] PASSED [ 31%] 597s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_wrap_unwrap_cycle[False-cog-residues-segments] PASSED [ 31%] 597s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_wrap_unwrap_cycle[False-cog-group-atoms] PASSED [ 31%] 597s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_wrap_unwrap_cycle[False-cog-group-residues] PASSED [ 31%] 597s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_wrap_unwrap_cycle[False-cog-group-segments] PASSED [ 31%] 597s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_wrap_unwrap_cycle[False-cog-segments-atoms] PASSED [ 31%] 597s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_wrap_unwrap_cycle[False-cog-segments-residues] PASSED [ 31%] 597s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_wrap_unwrap_cycle[False-cog-segments-segments] PASSED [ 31%] 597s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_wrap_unwrap_cycle[False-None-fragments-atoms] PASSED [ 31%] 597s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_wrap_unwrap_cycle[False-None-fragments-residues] PASSED [ 31%] 597s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_wrap_unwrap_cycle[False-None-fragments-segments] PASSED [ 31%] 597s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_wrap_unwrap_cycle[False-None-molecules-atoms] PASSED [ 31%] 597s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_wrap_unwrap_cycle[False-None-molecules-residues] PASSED [ 31%] 597s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_wrap_unwrap_cycle[False-None-molecules-segments] PASSED [ 31%] 597s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_wrap_unwrap_cycle[False-None-residues-atoms] PASSED [ 31%] 597s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_wrap_unwrap_cycle[False-None-residues-residues] PASSED [ 31%] 597s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_wrap_unwrap_cycle[False-None-residues-segments] PASSED [ 31%] 597s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_wrap_unwrap_cycle[False-None-group-atoms] PASSED [ 31%] 597s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_wrap_unwrap_cycle[False-None-group-residues] PASSED [ 31%] 597s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_wrap_unwrap_cycle[False-None-group-segments] PASSED [ 32%] 597s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_wrap_unwrap_cycle[False-None-segments-atoms] PASSED [ 32%] 597s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_wrap_unwrap_cycle[False-None-segments-residues] PASSED [ 32%] 597s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_wrap_unwrap_cycle[False-None-segments-segments] PASSED [ 32%] 597s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_wrap_unwrap_cycle[True-com-fragments-atoms] PASSED [ 32%] 597s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_wrap_unwrap_cycle[True-com-fragments-residues] PASSED [ 32%] 597s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_wrap_unwrap_cycle[True-com-fragments-segments] PASSED [ 32%] 597s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_wrap_unwrap_cycle[True-com-molecules-atoms] PASSED [ 32%] 597s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_wrap_unwrap_cycle[True-com-molecules-residues] PASSED [ 32%] 597s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_wrap_unwrap_cycle[True-com-molecules-segments] PASSED [ 32%] 597s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_wrap_unwrap_cycle[True-com-residues-atoms] PASSED [ 32%] 597s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_wrap_unwrap_cycle[True-com-residues-residues] PASSED [ 32%] 597s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_wrap_unwrap_cycle[True-com-residues-segments] PASSED [ 32%] 597s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_wrap_unwrap_cycle[True-com-group-atoms] PASSED [ 32%] 597s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_wrap_unwrap_cycle[True-com-group-residues] PASSED [ 32%] 597s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_wrap_unwrap_cycle[True-com-group-segments] PASSED [ 32%] 597s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_wrap_unwrap_cycle[True-com-segments-atoms] PASSED [ 32%] 597s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_wrap_unwrap_cycle[True-com-segments-residues] PASSED [ 32%] 597s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_wrap_unwrap_cycle[True-com-segments-segments] PASSED [ 32%] 597s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_wrap_unwrap_cycle[True-cog-fragments-atoms] PASSED [ 32%] 597s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_wrap_unwrap_cycle[True-cog-fragments-residues] PASSED [ 32%] 597s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_wrap_unwrap_cycle[True-cog-fragments-segments] PASSED [ 32%] 597s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_wrap_unwrap_cycle[True-cog-molecules-atoms] PASSED [ 32%] 597s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_wrap_unwrap_cycle[True-cog-molecules-residues] PASSED [ 32%] 597s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_wrap_unwrap_cycle[True-cog-molecules-segments] PASSED [ 32%] 597s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_wrap_unwrap_cycle[True-cog-residues-atoms] PASSED [ 32%] 597s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_wrap_unwrap_cycle[True-cog-residues-residues] PASSED [ 32%] 597s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_wrap_unwrap_cycle[True-cog-residues-segments] PASSED [ 32%] 597s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_wrap_unwrap_cycle[True-cog-group-atoms] PASSED [ 32%] 597s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_wrap_unwrap_cycle[True-cog-group-residues] PASSED [ 32%] 597s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_wrap_unwrap_cycle[True-cog-group-segments] PASSED [ 32%] 597s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_wrap_unwrap_cycle[True-cog-segments-atoms] PASSED [ 32%] 597s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_wrap_unwrap_cycle[True-cog-segments-residues] PASSED [ 32%] 597s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_wrap_unwrap_cycle[True-cog-segments-segments] PASSED [ 32%] 597s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_wrap_unwrap_cycle[True-None-fragments-atoms] PASSED [ 32%] 597s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_wrap_unwrap_cycle[True-None-fragments-residues] PASSED [ 32%] 597s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_wrap_unwrap_cycle[True-None-fragments-segments] PASSED [ 32%] 597s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_wrap_unwrap_cycle[True-None-molecules-atoms] PASSED [ 32%] 597s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_wrap_unwrap_cycle[True-None-molecules-residues] PASSED [ 32%] 597s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_wrap_unwrap_cycle[True-None-molecules-segments] PASSED [ 32%] 597s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_wrap_unwrap_cycle[True-None-residues-atoms] PASSED [ 32%] 597s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_wrap_unwrap_cycle[True-None-residues-residues] PASSED [ 32%] 597s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_wrap_unwrap_cycle[True-None-residues-segments] PASSED [ 32%] 597s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_wrap_unwrap_cycle[True-None-group-atoms] PASSED [ 32%] 597s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_wrap_unwrap_cycle[True-None-group-residues] PASSED [ 32%] 597s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_wrap_unwrap_cycle[True-None-group-segments] PASSED [ 32%] 597s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_wrap_unwrap_cycle[True-None-segments-atoms] PASSED [ 32%] 597s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_wrap_unwrap_cycle[True-None-segments-residues] PASSED [ 32%] 597s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_wrap_unwrap_cycle[True-None-segments-segments] PASSED [ 32%] 597s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_partial_frags[False-com-fragments] PASSED [ 32%] 597s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_partial_frags[False-com-molecules] PASSED [ 32%] 597s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_partial_frags[False-com-residues] PASSED [ 32%] 597s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_partial_frags[False-com-group] PASSED [ 32%] 597s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_partial_frags[False-com-segments] PASSED [ 32%] 597s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_partial_frags[False-cog-fragments] PASSED [ 32%] 597s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_partial_frags[False-cog-molecules] PASSED [ 32%] 597s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_partial_frags[False-cog-residues] PASSED [ 32%] 597s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_partial_frags[False-cog-group] PASSED [ 32%] 597s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_partial_frags[False-cog-segments] PASSED [ 32%] 597s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_partial_frags[False-None-fragments] PASSED [ 32%] 597s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_partial_frags[False-None-molecules] PASSED [ 32%] 597s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_partial_frags[False-None-residues] PASSED [ 32%] 597s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_partial_frags[False-None-group] PASSED [ 32%] 597s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_partial_frags[False-None-segments] PASSED [ 32%] 597s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_partial_frags[True-com-fragments] PASSED [ 32%] 597s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_partial_frags[True-com-molecules] PASSED [ 32%] 597s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_partial_frags[True-com-residues] PASSED [ 32%] 597s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_partial_frags[True-com-group] PASSED [ 32%] 597s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_partial_frags[True-com-segments] PASSED [ 32%] 597s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_partial_frags[True-cog-fragments] PASSED [ 32%] 597s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_partial_frags[True-cog-molecules] PASSED [ 32%] 597s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_partial_frags[True-cog-residues] PASSED [ 32%] 597s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_partial_frags[True-cog-group] PASSED [ 32%] 597s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_partial_frags[True-cog-segments] PASSED [ 32%] 597s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_partial_frags[True-None-fragments] PASSED [ 32%] 597s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_partial_frags[True-None-molecules] PASSED [ 32%] 597s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_partial_frags[True-None-residues] PASSED [ 32%] 597s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_partial_frags[True-None-group] PASSED [ 32%] 597s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_partial_frags[True-None-segments] PASSED [ 32%] 597s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_empty_group[False-com-fragments-atoms] PASSED [ 32%] 597s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_empty_group[False-com-fragments-residues] PASSED [ 32%] 597s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_empty_group[False-com-fragments-segments] PASSED [ 32%] 597s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_empty_group[False-com-molecules-atoms] PASSED [ 32%] 597s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_empty_group[False-com-molecules-residues] PASSED [ 32%] 597s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_empty_group[False-com-molecules-segments] PASSED [ 32%] 597s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_empty_group[False-com-residues-atoms] PASSED [ 32%] 597s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_empty_group[False-com-residues-residues] PASSED [ 32%] 597s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_empty_group[False-com-residues-segments] PASSED [ 32%] 597s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_empty_group[False-com-group-atoms] PASSED [ 32%] 597s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_empty_group[False-com-group-residues] PASSED [ 32%] 597s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_empty_group[False-com-group-segments] PASSED [ 32%] 597s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_empty_group[False-com-segments-atoms] PASSED [ 32%] 597s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_empty_group[False-com-segments-residues] PASSED [ 32%] 597s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_empty_group[False-com-segments-segments] PASSED [ 32%] 597s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_empty_group[False-cog-fragments-atoms] PASSED [ 32%] 597s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_empty_group[False-cog-fragments-residues] PASSED [ 32%] 597s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_empty_group[False-cog-fragments-segments] PASSED [ 32%] 597s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_empty_group[False-cog-molecules-atoms] PASSED [ 32%] 597s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_empty_group[False-cog-molecules-residues] PASSED [ 32%] 597s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_empty_group[False-cog-molecules-segments] PASSED [ 32%] 597s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_empty_group[False-cog-residues-atoms] PASSED [ 32%] 597s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_empty_group[False-cog-residues-residues] PASSED [ 32%] 597s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_empty_group[False-cog-residues-segments] PASSED [ 32%] 597s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_empty_group[False-cog-group-atoms] PASSED [ 32%] 597s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_empty_group[False-cog-group-residues] PASSED [ 32%] 597s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_empty_group[False-cog-group-segments] PASSED [ 32%] 597s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_empty_group[False-cog-segments-atoms] PASSED [ 32%] 597s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_empty_group[False-cog-segments-residues] PASSED [ 32%] 597s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_empty_group[False-cog-segments-segments] PASSED [ 32%] 597s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_empty_group[False-None-fragments-atoms] PASSED [ 32%] 597s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_empty_group[False-None-fragments-residues] PASSED [ 32%] 597s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_empty_group[False-None-fragments-segments] PASSED [ 32%] 597s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_empty_group[False-None-molecules-atoms] PASSED [ 32%] 597s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_empty_group[False-None-molecules-residues] PASSED [ 32%] 597s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_empty_group[False-None-molecules-segments] PASSED [ 32%] 597s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_empty_group[False-None-residues-atoms] PASSED [ 32%] 597s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_empty_group[False-None-residues-residues] PASSED [ 32%] 597s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_empty_group[False-None-residues-segments] PASSED [ 32%] 597s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_empty_group[False-None-group-atoms] PASSED [ 32%] 597s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_empty_group[False-None-group-residues] PASSED [ 32%] 597s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_empty_group[False-None-group-segments] PASSED [ 32%] 597s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_empty_group[False-None-segments-atoms] PASSED [ 32%] 597s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_empty_group[False-None-segments-residues] PASSED [ 32%] 597s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_empty_group[False-None-segments-segments] PASSED [ 32%] 597s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_empty_group[True-com-fragments-atoms] PASSED [ 32%] 597s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_empty_group[True-com-fragments-residues] PASSED [ 32%] 597s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_empty_group[True-com-fragments-segments] PASSED [ 32%] 597s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_empty_group[True-com-molecules-atoms] PASSED [ 32%] 597s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_empty_group[True-com-molecules-residues] PASSED [ 32%] 597s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_empty_group[True-com-molecules-segments] PASSED [ 32%] 597s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_empty_group[True-com-residues-atoms] PASSED [ 32%] 597s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_empty_group[True-com-residues-residues] PASSED [ 32%] 597s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_empty_group[True-com-residues-segments] PASSED [ 32%] 597s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_empty_group[True-com-group-atoms] PASSED [ 32%] 597s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_empty_group[True-com-group-residues] PASSED [ 32%] 597s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_empty_group[True-com-group-segments] PASSED [ 32%] 597s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_empty_group[True-com-segments-atoms] PASSED [ 32%] 597s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_empty_group[True-com-segments-residues] PASSED [ 32%] 597s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_empty_group[True-com-segments-segments] PASSED [ 32%] 597s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_empty_group[True-cog-fragments-atoms] PASSED [ 32%] 597s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_empty_group[True-cog-fragments-residues] PASSED [ 32%] 597s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_empty_group[True-cog-fragments-segments] PASSED [ 32%] 597s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_empty_group[True-cog-molecules-atoms] PASSED [ 32%] 597s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_empty_group[True-cog-molecules-residues] PASSED [ 32%] 597s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_empty_group[True-cog-molecules-segments] PASSED [ 32%] 597s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_empty_group[True-cog-residues-atoms] PASSED [ 32%] 597s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_empty_group[True-cog-residues-residues] PASSED [ 32%] 597s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_empty_group[True-cog-residues-segments] PASSED [ 32%] 597s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_empty_group[True-cog-group-atoms] PASSED [ 32%] 597s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_empty_group[True-cog-group-residues] PASSED [ 32%] 597s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_empty_group[True-cog-group-segments] PASSED [ 32%] 597s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_empty_group[True-cog-segments-atoms] PASSED [ 32%] 597s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_empty_group[True-cog-segments-residues] PASSED [ 32%] 597s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_empty_group[True-cog-segments-segments] PASSED [ 32%] 597s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_empty_group[True-None-fragments-atoms] PASSED [ 32%] 597s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_empty_group[True-None-fragments-residues] PASSED [ 32%] 597s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_empty_group[True-None-fragments-segments] PASSED [ 32%] 597s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_empty_group[True-None-molecules-atoms] PASSED [ 32%] 597s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_empty_group[True-None-molecules-residues] PASSED [ 32%] 597s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_empty_group[True-None-molecules-segments] PASSED [ 32%] 597s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_empty_group[True-None-residues-atoms] PASSED [ 32%] 597s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_empty_group[True-None-residues-residues] PASSED [ 32%] 597s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_empty_group[True-None-residues-segments] PASSED [ 32%] 597s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_empty_group[True-None-group-atoms] PASSED [ 32%] 597s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_empty_group[True-None-group-residues] PASSED [ 32%] 597s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_empty_group[True-None-group-segments] PASSED [ 32%] 597s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_empty_group[True-None-segments-atoms] PASSED [ 32%] 597s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_empty_group[True-None-segments-residues] PASSED [ 32%] 597s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_empty_group[True-None-segments-segments] PASSED [ 32%] 597s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_duplicates[False-com-fragments-atoms] PASSED [ 32%] 597s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_duplicates[False-com-fragments-residues] PASSED [ 32%] 597s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_duplicates[False-com-fragments-segments] PASSED [ 32%] 597s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_duplicates[False-com-molecules-atoms] PASSED [ 32%] 597s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_duplicates[False-com-molecules-residues] PASSED [ 32%] 597s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_duplicates[False-com-molecules-segments] PASSED [ 32%] 597s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_duplicates[False-com-residues-atoms] PASSED [ 32%] 597s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_duplicates[False-com-residues-residues] PASSED [ 32%] 597s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_duplicates[False-com-residues-segments] PASSED [ 32%] 597s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_duplicates[False-com-group-atoms] PASSED [ 32%] 597s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_duplicates[False-com-group-residues] PASSED [ 32%] 597s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_duplicates[False-com-group-segments] PASSED [ 32%] 597s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_duplicates[False-com-segments-atoms] PASSED [ 32%] 597s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_duplicates[False-com-segments-residues] PASSED [ 32%] 597s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_duplicates[False-com-segments-segments] PASSED [ 32%] 597s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_duplicates[False-cog-fragments-atoms] PASSED [ 32%] 597s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_duplicates[False-cog-fragments-residues] PASSED [ 33%] 597s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_duplicates[False-cog-fragments-segments] PASSED [ 33%] 597s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_duplicates[False-cog-molecules-atoms] PASSED [ 33%] 597s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_duplicates[False-cog-molecules-residues] PASSED [ 33%] 597s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_duplicates[False-cog-molecules-segments] PASSED [ 33%] 597s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_duplicates[False-cog-residues-atoms] PASSED [ 33%] 597s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_duplicates[False-cog-residues-residues] PASSED [ 33%] 597s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_duplicates[False-cog-residues-segments] PASSED [ 33%] 597s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_duplicates[False-cog-group-atoms] PASSED [ 33%] 597s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_duplicates[False-cog-group-residues] PASSED [ 33%] 597s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_duplicates[False-cog-group-segments] PASSED [ 33%] 597s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_duplicates[False-cog-segments-atoms] PASSED [ 33%] 597s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_duplicates[False-cog-segments-residues] PASSED [ 33%] 597s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_duplicates[False-cog-segments-segments] PASSED [ 33%] 597s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_duplicates[False-None-fragments-atoms] PASSED [ 33%] 597s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_duplicates[False-None-fragments-residues] PASSED [ 33%] 597s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_duplicates[False-None-fragments-segments] PASSED [ 33%] 597s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_duplicates[False-None-molecules-atoms] PASSED [ 33%] 597s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_duplicates[False-None-molecules-residues] PASSED [ 33%] 597s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_duplicates[False-None-molecules-segments] PASSED [ 33%] 597s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_duplicates[False-None-residues-atoms] PASSED [ 33%] 597s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_duplicates[False-None-residues-residues] PASSED [ 33%] 597s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_duplicates[False-None-residues-segments] PASSED [ 33%] 597s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_duplicates[False-None-group-atoms] PASSED [ 33%] 597s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_duplicates[False-None-group-residues] PASSED [ 33%] 597s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_duplicates[False-None-group-segments] PASSED [ 33%] 597s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_duplicates[False-None-segments-atoms] PASSED [ 33%] 597s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_duplicates[False-None-segments-residues] PASSED [ 33%] 597s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_duplicates[False-None-segments-segments] PASSED [ 33%] 597s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_duplicates[True-com-fragments-atoms] PASSED [ 33%] 597s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_duplicates[True-com-fragments-residues] PASSED [ 33%] 597s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_duplicates[True-com-fragments-segments] PASSED [ 33%] 597s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_duplicates[True-com-molecules-atoms] PASSED [ 33%] 597s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_duplicates[True-com-molecules-residues] PASSED [ 33%] 597s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_duplicates[True-com-molecules-segments] PASSED [ 33%] 597s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_duplicates[True-com-residues-atoms] PASSED [ 33%] 597s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_duplicates[True-com-residues-residues] PASSED [ 33%] 597s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_duplicates[True-com-residues-segments] PASSED [ 33%] 597s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_duplicates[True-com-group-atoms] PASSED [ 33%] 597s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_duplicates[True-com-group-residues] PASSED [ 33%] 597s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_duplicates[True-com-group-segments] PASSED [ 33%] 597s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_duplicates[True-com-segments-atoms] PASSED [ 33%] 597s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_duplicates[True-com-segments-residues] PASSED [ 33%] 597s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_duplicates[True-com-segments-segments] PASSED [ 33%] 597s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_duplicates[True-cog-fragments-atoms] PASSED [ 33%] 597s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_duplicates[True-cog-fragments-residues] PASSED [ 33%] 597s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_duplicates[True-cog-fragments-segments] PASSED [ 33%] 597s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_duplicates[True-cog-molecules-atoms] PASSED [ 33%] 597s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_duplicates[True-cog-molecules-residues] PASSED [ 33%] 597s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_duplicates[True-cog-molecules-segments] PASSED [ 33%] 597s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_duplicates[True-cog-residues-atoms] PASSED [ 33%] 597s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_duplicates[True-cog-residues-residues] PASSED [ 33%] 597s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_duplicates[True-cog-residues-segments] PASSED [ 33%] 597s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_duplicates[True-cog-group-atoms] PASSED [ 33%] 597s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_duplicates[True-cog-group-residues] PASSED [ 33%] 597s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_duplicates[True-cog-group-segments] PASSED [ 33%] 597s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_duplicates[True-cog-segments-atoms] PASSED [ 33%] 597s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_duplicates[True-cog-segments-residues] PASSED [ 33%] 597s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_duplicates[True-cog-segments-segments] PASSED [ 33%] 597s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_duplicates[True-None-fragments-atoms] PASSED [ 33%] 597s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_duplicates[True-None-fragments-residues] PASSED [ 33%] 597s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_duplicates[True-None-fragments-segments] PASSED [ 33%] 597s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_duplicates[True-None-molecules-atoms] PASSED [ 33%] 597s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_duplicates[True-None-molecules-residues] PASSED [ 33%] 597s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_duplicates[True-None-molecules-segments] PASSED [ 33%] 597s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_duplicates[True-None-residues-atoms] PASSED [ 33%] 597s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_duplicates[True-None-residues-residues] PASSED [ 33%] 597s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_duplicates[True-None-residues-segments] PASSED [ 33%] 597s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_duplicates[True-None-group-atoms] PASSED [ 33%] 597s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_duplicates[True-None-group-residues] PASSED [ 33%] 597s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_duplicates[True-None-group-segments] PASSED [ 33%] 597s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_duplicates[True-None-segments-atoms] PASSED [ 33%] 597s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_duplicates[True-None-segments-residues] PASSED [ 33%] 597s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_duplicates[True-None-segments-segments] PASSED [ 33%] 597s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_com_cog_difference[False-fragments] PASSED [ 33%] 597s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_com_cog_difference[False-molecules] PASSED [ 33%] 597s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_com_cog_difference[False-residues] PASSED [ 33%] 597s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_com_cog_difference[False-group] PASSED [ 33%] 597s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_com_cog_difference[False-segments] PASSED [ 33%] 597s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_com_cog_difference[True-fragments] PASSED [ 33%] 597s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_com_cog_difference[True-molecules] PASSED [ 33%] 597s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_com_cog_difference[True-residues] PASSED [ 33%] 597s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_com_cog_difference[True-group] PASSED [ 33%] 597s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_com_cog_difference[True-segments] PASSED [ 33%] 597s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_zero_mass_exception_safety[fragments-atoms] PASSED [ 33%] 597s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_zero_mass_exception_safety[fragments-residues] PASSED [ 33%] 598s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_zero_mass_exception_safety[fragments-segments] PASSED [ 33%] 598s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_zero_mass_exception_safety[molecules-atoms] PASSED [ 33%] 598s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_zero_mass_exception_safety[molecules-residues] PASSED [ 33%] 598s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_zero_mass_exception_safety[molecules-segments] PASSED [ 33%] 598s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_zero_mass_exception_safety[residues-atoms] PASSED [ 33%] 598s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_zero_mass_exception_safety[residues-residues] PASSED [ 33%] 598s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_zero_mass_exception_safety[residues-segments] PASSED [ 33%] 598s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_zero_mass_exception_safety[group-atoms] PASSED [ 33%] 598s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_zero_mass_exception_safety[group-residues] PASSED [ 33%] 598s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_zero_mass_exception_safety[group-segments] PASSED [ 33%] 598s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_zero_mass_exception_safety[segments-atoms] PASSED [ 33%] 598s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_zero_mass_exception_safety[segments-residues] PASSED [ 33%] 598s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_zero_mass_exception_safety[segments-segments] PASSED [ 33%] 598s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_wrong_reference_exception_safety[fragments-atoms] PASSED [ 33%] 598s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_wrong_reference_exception_safety[fragments-residues] PASSED [ 33%] 598s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_wrong_reference_exception_safety[fragments-segments] PASSED [ 33%] 598s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_wrong_reference_exception_safety[molecules-atoms] PASSED [ 33%] 598s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_wrong_reference_exception_safety[molecules-residues] PASSED [ 33%] 598s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_wrong_reference_exception_safety[molecules-segments] PASSED [ 33%] 598s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_wrong_reference_exception_safety[residues-atoms] PASSED [ 33%] 598s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_wrong_reference_exception_safety[residues-residues] PASSED [ 33%] 598s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_wrong_reference_exception_safety[residues-segments] PASSED [ 33%] 598s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_wrong_reference_exception_safety[group-atoms] PASSED [ 33%] 598s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_wrong_reference_exception_safety[group-residues] PASSED [ 33%] 598s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_wrong_reference_exception_safety[group-segments] PASSED [ 33%] 598s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_wrong_reference_exception_safety[segments-atoms] PASSED [ 33%] 598s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_wrong_reference_exception_safety[segments-residues] PASSED [ 33%] 598s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_wrong_reference_exception_safety[segments-segments] PASSED [ 33%] 598s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_wrong_compound_exception_safety[com-atoms] PASSED [ 33%] 598s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_wrong_compound_exception_safety[com-residues] PASSED [ 33%] 598s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_wrong_compound_exception_safety[com-segments] PASSED [ 33%] 598s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_wrong_compound_exception_safety[cog-atoms] PASSED [ 33%] 598s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_wrong_compound_exception_safety[cog-residues] PASSED [ 33%] 598s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_wrong_compound_exception_safety[cog-segments] PASSED [ 33%] 598s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_wrong_compound_exception_safety[None-atoms] PASSED [ 33%] 598s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_wrong_compound_exception_safety[None-residues] PASSED [ 33%] 598s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_wrong_compound_exception_safety[None-segments] PASSED [ 33%] 598s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_no_masses_exception_safety[fragments-atoms] PASSED [ 33%] 598s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_no_masses_exception_safety[fragments-residues] PASSED [ 33%] 598s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_no_masses_exception_safety[fragments-segments] PASSED [ 33%] 598s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_no_masses_exception_safety[molecules-atoms] PASSED [ 33%] 598s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_no_masses_exception_safety[molecules-residues] PASSED [ 33%] 598s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_no_masses_exception_safety[molecules-segments] PASSED [ 33%] 598s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_no_masses_exception_safety[residues-atoms] PASSED [ 33%] 598s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_no_masses_exception_safety[residues-residues] PASSED [ 33%] 598s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_no_masses_exception_safety[residues-segments] PASSED [ 33%] 598s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_no_masses_exception_safety[group-atoms] PASSED [ 33%] 598s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_no_masses_exception_safety[group-residues] PASSED [ 33%] 598s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_no_masses_exception_safety[group-segments] PASSED [ 33%] 598s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_no_masses_exception_safety[segments-atoms] PASSED [ 33%] 598s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_no_masses_exception_safety[segments-residues] PASSED [ 33%] 598s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_no_masses_exception_safety[segments-segments] PASSED [ 33%] 598s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_no_bonds_exception_safety[com-fragments-atoms] PASSED [ 33%] 598s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_no_bonds_exception_safety[com-fragments-residues] PASSED [ 33%] 598s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_no_bonds_exception_safety[com-fragments-segments] PASSED [ 33%] 598s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_no_bonds_exception_safety[com-molecules-atoms] PASSED [ 33%] 598s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_no_bonds_exception_safety[com-molecules-residues] PASSED [ 33%] 598s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_no_bonds_exception_safety[com-molecules-segments] PASSED [ 33%] 598s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_no_bonds_exception_safety[com-residues-atoms] PASSED [ 33%] 598s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_no_bonds_exception_safety[com-residues-residues] PASSED [ 33%] 598s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_no_bonds_exception_safety[com-residues-segments] PASSED [ 33%] 598s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_no_bonds_exception_safety[com-group-atoms] PASSED [ 33%] 598s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_no_bonds_exception_safety[com-group-residues] PASSED [ 33%] 598s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_no_bonds_exception_safety[com-group-segments] PASSED [ 33%] 598s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_no_bonds_exception_safety[com-segments-atoms] PASSED [ 33%] 598s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_no_bonds_exception_safety[com-segments-residues] PASSED [ 33%] 598s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_no_bonds_exception_safety[com-segments-segments] PASSED [ 33%] 598s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_no_bonds_exception_safety[cog-fragments-atoms] PASSED [ 33%] 598s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_no_bonds_exception_safety[cog-fragments-residues] PASSED [ 33%] 598s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_no_bonds_exception_safety[cog-fragments-segments] PASSED [ 33%] 598s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_no_bonds_exception_safety[cog-molecules-atoms] PASSED [ 33%] 598s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_no_bonds_exception_safety[cog-molecules-residues] PASSED [ 33%] 598s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_no_bonds_exception_safety[cog-molecules-segments] PASSED [ 33%] 598s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_no_bonds_exception_safety[cog-residues-atoms] PASSED [ 33%] 598s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_no_bonds_exception_safety[cog-residues-residues] PASSED [ 33%] 598s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_no_bonds_exception_safety[cog-residues-segments] PASSED [ 33%] 598s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_no_bonds_exception_safety[cog-group-atoms] PASSED [ 33%] 598s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_no_bonds_exception_safety[cog-group-residues] PASSED [ 33%] 598s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_no_bonds_exception_safety[cog-group-segments] PASSED [ 33%] 598s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_no_bonds_exception_safety[cog-segments-atoms] PASSED [ 33%] 598s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_no_bonds_exception_safety[cog-segments-residues] PASSED [ 33%] 598s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_no_bonds_exception_safety[cog-segments-segments] PASSED [ 33%] 598s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_no_bonds_exception_safety[None-fragments-atoms] PASSED [ 33%] 598s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_no_bonds_exception_safety[None-fragments-residues] PASSED [ 33%] 598s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_no_bonds_exception_safety[None-fragments-segments] PASSED [ 33%] 598s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_no_bonds_exception_safety[None-molecules-atoms] PASSED [ 33%] 598s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_no_bonds_exception_safety[None-molecules-residues] PASSED [ 33%] 598s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_no_bonds_exception_safety[None-molecules-segments] PASSED [ 33%] 598s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_no_bonds_exception_safety[None-residues-atoms] PASSED [ 33%] 598s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_no_bonds_exception_safety[None-residues-residues] PASSED [ 33%] 598s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_no_bonds_exception_safety[None-residues-segments] PASSED [ 33%] 598s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_no_bonds_exception_safety[None-group-atoms] PASSED [ 33%] 598s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_no_bonds_exception_safety[None-group-residues] PASSED [ 33%] 598s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_no_bonds_exception_safety[None-group-segments] PASSED [ 33%] 598s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_no_bonds_exception_safety[None-segments-atoms] PASSED [ 33%] 598s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_no_bonds_exception_safety[None-segments-residues] PASSED [ 33%] 598s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_no_bonds_exception_safety[None-segments-segments] PASSED [ 33%] 598s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_no_molnums_exception_safety[com-atoms] PASSED [ 33%] 598s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_no_molnums_exception_safety[com-residues] PASSED [ 34%] 598s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_no_molnums_exception_safety[com-segments] PASSED [ 34%] 598s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_no_molnums_exception_safety[cog-atoms] PASSED [ 34%] 598s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_no_molnums_exception_safety[cog-residues] PASSED [ 34%] 598s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_no_molnums_exception_safety[cog-segments] PASSED [ 34%] 598s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_no_molnums_exception_safety[None-atoms] PASSED [ 34%] 598s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_no_molnums_exception_safety[None-residues] PASSED [ 34%] 598s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_no_molnums_exception_safety[None-segments] PASSED [ 34%] 598s testsuite/MDAnalysisTests/core/test_unwrap.py::test_uncontiguous PASSED [ 34%] 598s testsuite/MDAnalysisTests/core/test_updating_atomgroup.py::TestUpdatingSelection::test_update PASSED [ 34%] 598s testsuite/MDAnalysisTests/core/test_updating_atomgroup.py::TestUpdatingSelection::test_compounded_update PASSED [ 34%] 599s testsuite/MDAnalysisTests/core/test_updating_atomgroup.py::TestUpdatingSelection::test_chained_update PASSED [ 34%] 599s testsuite/MDAnalysisTests/core/test_updating_atomgroup.py::TestUpdatingSelection::test_chained_update2 PASSED [ 34%] 599s testsuite/MDAnalysisTests/core/test_updating_atomgroup.py::TestUpdatingSelection::test_slice_is_static PASSED [ 34%] 599s testsuite/MDAnalysisTests/core/test_updating_atomgroup.py::TestUpdatingSelection::test_kwarg_check PASSED [ 34%] 600s testsuite/MDAnalysisTests/core/test_updating_atomgroup.py::TestUpdatingSelection::test_atoms PASSED [ 34%] 600s testsuite/MDAnalysisTests/core/test_updating_atomgroup.py::TestUpdatingSelection::test_copy PASSED [ 34%] 600s testsuite/MDAnalysisTests/core/test_updating_atomgroup.py::TestUpdatingSelectionNotraj::test_update PASSED [ 34%] 600s testsuite/MDAnalysisTests/core/test_updating_atomgroup.py::TestUAGCallCount::test_updated_when_creating PASSED [ 34%] 600s testsuite/MDAnalysisTests/core/test_updating_atomgroup.py::TestUAGCallCount::test_updated_when_next PASSED [ 34%] 600s testsuite/MDAnalysisTests/core/test_updating_atomgroup.py::TestDynamicUAG::test_nested_uags PASSED [ 34%] 600s testsuite/MDAnalysisTests/core/test_updating_atomgroup.py::TestDynamicUAG::test_driveby PASSED [ 34%] 600s testsuite/MDAnalysisTests/core/test_updating_atomgroup.py::test_representations PASSED [ 34%] 600s testsuite/MDAnalysisTests/core/test_updating_atomgroup.py::test_empty_UAG PASSED [ 34%] 600s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_pass[False-com-atoms-atoms] PASSED [ 34%] 600s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_pass[False-com-atoms-residues] PASSED [ 34%] 600s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_pass[False-com-atoms-segments] PASSED [ 34%] 600s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_pass[False-com-group-atoms] PASSED [ 34%] 600s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_pass[False-com-group-residues] PASSED [ 34%] 600s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_pass[False-com-group-segments] PASSED [ 34%] 600s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_pass[False-com-segments-atoms] PASSED [ 34%] 600s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_pass[False-com-segments-residues] PASSED [ 34%] 600s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_pass[False-com-segments-segments] PASSED [ 34%] 600s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_pass[False-com-residues-atoms] PASSED [ 34%] 600s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_pass[False-com-residues-residues] PASSED [ 34%] 600s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_pass[False-com-residues-segments] PASSED [ 34%] 600s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_pass[False-com-molecules-atoms] PASSED [ 34%] 600s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_pass[False-com-molecules-residues] PASSED [ 34%] 600s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_pass[False-com-molecules-segments] PASSED [ 34%] 600s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_pass[False-com-fragments-atoms] PASSED [ 34%] 600s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_pass[False-com-fragments-residues] PASSED [ 34%] 600s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_pass[False-com-fragments-segments] PASSED [ 34%] 600s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_pass[False-cog-atoms-atoms] PASSED [ 34%] 600s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_pass[False-cog-atoms-residues] PASSED [ 34%] 600s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_pass[False-cog-atoms-segments] PASSED [ 34%] 600s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_pass[False-cog-group-atoms] PASSED [ 34%] 600s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_pass[False-cog-group-residues] PASSED [ 34%] 600s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_pass[False-cog-group-segments] PASSED [ 34%] 600s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_pass[False-cog-segments-atoms] PASSED [ 34%] 600s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_pass[False-cog-segments-residues] PASSED [ 34%] 600s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_pass[False-cog-segments-segments] PASSED [ 34%] 600s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_pass[False-cog-residues-atoms] PASSED [ 34%] 600s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_pass[False-cog-residues-residues] PASSED [ 34%] 600s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_pass[False-cog-residues-segments] PASSED [ 34%] 600s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_pass[False-cog-molecules-atoms] PASSED [ 34%] 600s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_pass[False-cog-molecules-residues] PASSED [ 34%] 600s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_pass[False-cog-molecules-segments] PASSED [ 34%] 600s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_pass[False-cog-fragments-atoms] PASSED [ 34%] 600s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_pass[False-cog-fragments-residues] PASSED [ 34%] 600s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_pass[False-cog-fragments-segments] PASSED [ 34%] 600s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_pass[True-com-atoms-atoms] PASSED [ 34%] 600s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_pass[True-com-atoms-residues] PASSED [ 34%] 600s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_pass[True-com-atoms-segments] PASSED [ 34%] 600s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_pass[True-com-group-atoms] PASSED [ 34%] 600s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_pass[True-com-group-residues] PASSED [ 34%] 600s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_pass[True-com-group-segments] PASSED [ 34%] 600s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_pass[True-com-segments-atoms] PASSED [ 34%] 600s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_pass[True-com-segments-residues] PASSED [ 34%] 600s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_pass[True-com-segments-segments] PASSED [ 34%] 600s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_pass[True-com-residues-atoms] PASSED [ 34%] 600s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_pass[True-com-residues-residues] PASSED [ 34%] 600s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_pass[True-com-residues-segments] PASSED [ 34%] 600s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_pass[True-com-molecules-atoms] PASSED [ 34%] 600s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_pass[True-com-molecules-residues] PASSED [ 34%] 600s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_pass[True-com-molecules-segments] PASSED [ 34%] 600s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_pass[True-com-fragments-atoms] PASSED [ 34%] 600s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_pass[True-com-fragments-residues] PASSED [ 34%] 600s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_pass[True-com-fragments-segments] PASSED [ 34%] 600s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_pass[True-cog-atoms-atoms] PASSED [ 34%] 600s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_pass[True-cog-atoms-residues] PASSED [ 34%] 600s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_pass[True-cog-atoms-segments] PASSED [ 34%] 600s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_pass[True-cog-group-atoms] PASSED [ 34%] 600s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_pass[True-cog-group-residues] PASSED [ 34%] 600s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_pass[True-cog-group-segments] PASSED [ 34%] 600s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_pass[True-cog-segments-atoms] PASSED [ 34%] 600s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_pass[True-cog-segments-residues] PASSED [ 34%] 600s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_pass[True-cog-segments-segments] PASSED [ 34%] 600s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_pass[True-cog-residues-atoms] PASSED [ 34%] 600s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_pass[True-cog-residues-residues] PASSED [ 34%] 600s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_pass[True-cog-residues-segments] PASSED [ 34%] 600s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_pass[True-cog-molecules-atoms] PASSED [ 34%] 600s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_pass[True-cog-molecules-residues] PASSED [ 34%] 600s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_pass[True-cog-molecules-segments] PASSED [ 34%] 600s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_pass[True-cog-fragments-atoms] PASSED [ 34%] 600s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_pass[True-cog-fragments-residues] PASSED [ 34%] 600s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_pass[True-cog-fragments-segments] PASSED [ 34%] 600s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_unwrap_wrap_cycle[False-com-atoms-atoms] PASSED [ 34%] 600s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_unwrap_wrap_cycle[False-com-atoms-residues] PASSED [ 34%] 600s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_unwrap_wrap_cycle[False-com-atoms-segments] PASSED [ 34%] 600s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_unwrap_wrap_cycle[False-com-group-atoms] PASSED [ 34%] 600s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_unwrap_wrap_cycle[False-com-group-residues] PASSED [ 34%] 600s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_unwrap_wrap_cycle[False-com-group-segments] PASSED [ 34%] 600s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_unwrap_wrap_cycle[False-com-segments-atoms] PASSED [ 34%] 600s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_unwrap_wrap_cycle[False-com-segments-residues] PASSED [ 34%] 600s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_unwrap_wrap_cycle[False-com-segments-segments] PASSED [ 34%] 600s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_unwrap_wrap_cycle[False-com-residues-atoms] PASSED [ 34%] 600s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_unwrap_wrap_cycle[False-com-residues-residues] PASSED [ 34%] 600s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_unwrap_wrap_cycle[False-com-residues-segments] PASSED [ 34%] 600s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_unwrap_wrap_cycle[False-com-molecules-atoms] PASSED [ 34%] 600s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_unwrap_wrap_cycle[False-com-molecules-residues] PASSED [ 34%] 600s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_unwrap_wrap_cycle[False-com-molecules-segments] PASSED [ 34%] 600s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_unwrap_wrap_cycle[False-com-fragments-atoms] PASSED [ 34%] 600s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_unwrap_wrap_cycle[False-com-fragments-residues] PASSED [ 34%] 600s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_unwrap_wrap_cycle[False-com-fragments-segments] PASSED [ 34%] 600s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_unwrap_wrap_cycle[False-cog-atoms-atoms] PASSED [ 34%] 600s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_unwrap_wrap_cycle[False-cog-atoms-residues] PASSED [ 34%] 600s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_unwrap_wrap_cycle[False-cog-atoms-segments] PASSED [ 34%] 600s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_unwrap_wrap_cycle[False-cog-group-atoms] PASSED [ 34%] 600s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_unwrap_wrap_cycle[False-cog-group-residues] PASSED [ 34%] 600s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_unwrap_wrap_cycle[False-cog-group-segments] PASSED [ 34%] 600s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_unwrap_wrap_cycle[False-cog-segments-atoms] PASSED [ 34%] 600s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_unwrap_wrap_cycle[False-cog-segments-residues] PASSED [ 34%] 600s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_unwrap_wrap_cycle[False-cog-segments-segments] PASSED [ 34%] 600s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_unwrap_wrap_cycle[False-cog-residues-atoms] PASSED [ 34%] 600s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_unwrap_wrap_cycle[False-cog-residues-residues] PASSED [ 34%] 600s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_unwrap_wrap_cycle[False-cog-residues-segments] PASSED [ 34%] 601s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_unwrap_wrap_cycle[False-cog-molecules-atoms] PASSED [ 34%] 601s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_unwrap_wrap_cycle[False-cog-molecules-residues] PASSED [ 34%] 601s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_unwrap_wrap_cycle[False-cog-molecules-segments] PASSED [ 34%] 601s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_unwrap_wrap_cycle[False-cog-fragments-atoms] PASSED [ 34%] 601s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_unwrap_wrap_cycle[False-cog-fragments-residues] PASSED [ 34%] 601s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_unwrap_wrap_cycle[False-cog-fragments-segments] PASSED [ 34%] 601s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_unwrap_wrap_cycle[True-com-atoms-atoms] PASSED [ 34%] 601s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_unwrap_wrap_cycle[True-com-atoms-residues] PASSED [ 34%] 601s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_unwrap_wrap_cycle[True-com-atoms-segments] PASSED [ 34%] 601s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_unwrap_wrap_cycle[True-com-group-atoms] PASSED [ 34%] 601s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_unwrap_wrap_cycle[True-com-group-residues] PASSED [ 34%] 601s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_unwrap_wrap_cycle[True-com-group-segments] PASSED [ 34%] 601s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_unwrap_wrap_cycle[True-com-segments-atoms] PASSED [ 34%] 601s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_unwrap_wrap_cycle[True-com-segments-residues] PASSED [ 34%] 601s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_unwrap_wrap_cycle[True-com-segments-segments] PASSED [ 34%] 601s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_unwrap_wrap_cycle[True-com-residues-atoms] PASSED [ 34%] 601s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_unwrap_wrap_cycle[True-com-residues-residues] PASSED [ 34%] 601s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_unwrap_wrap_cycle[True-com-residues-segments] PASSED [ 34%] 601s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_unwrap_wrap_cycle[True-com-molecules-atoms] PASSED [ 34%] 601s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_unwrap_wrap_cycle[True-com-molecules-residues] PASSED [ 34%] 601s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_unwrap_wrap_cycle[True-com-molecules-segments] PASSED [ 34%] 601s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_unwrap_wrap_cycle[True-com-fragments-atoms] PASSED [ 34%] 601s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_unwrap_wrap_cycle[True-com-fragments-residues] PASSED [ 34%] 601s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_unwrap_wrap_cycle[True-com-fragments-segments] PASSED [ 34%] 601s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_unwrap_wrap_cycle[True-cog-atoms-atoms] PASSED [ 34%] 601s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_unwrap_wrap_cycle[True-cog-atoms-residues] PASSED [ 34%] 601s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_unwrap_wrap_cycle[True-cog-atoms-segments] PASSED [ 34%] 601s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_unwrap_wrap_cycle[True-cog-group-atoms] PASSED [ 34%] 601s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_unwrap_wrap_cycle[True-cog-group-residues] PASSED [ 34%] 601s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_unwrap_wrap_cycle[True-cog-group-segments] PASSED [ 34%] 601s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_unwrap_wrap_cycle[True-cog-segments-atoms] PASSED [ 34%] 601s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_unwrap_wrap_cycle[True-cog-segments-residues] PASSED [ 34%] 601s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_unwrap_wrap_cycle[True-cog-segments-segments] PASSED [ 34%] 601s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_unwrap_wrap_cycle[True-cog-residues-atoms] PASSED [ 34%] 601s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_unwrap_wrap_cycle[True-cog-residues-residues] PASSED [ 34%] 601s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_unwrap_wrap_cycle[True-cog-residues-segments] PASSED [ 34%] 601s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_unwrap_wrap_cycle[True-cog-molecules-atoms] PASSED [ 34%] 601s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_unwrap_wrap_cycle[True-cog-molecules-residues] PASSED [ 34%] 601s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_unwrap_wrap_cycle[True-cog-molecules-segments] PASSED [ 34%] 601s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_unwrap_wrap_cycle[True-cog-fragments-atoms] PASSED [ 34%] 601s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_unwrap_wrap_cycle[True-cog-fragments-residues] PASSED [ 34%] 601s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_unwrap_wrap_cycle[True-cog-fragments-segments] PASSED [ 34%] 601s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_partial_compound[False-com-atoms-atoms] PASSED [ 34%] 601s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_partial_compound[False-com-atoms-residues] PASSED [ 34%] 601s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_partial_compound[False-com-atoms-segments] PASSED [ 34%] 601s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_partial_compound[False-com-group-atoms] PASSED [ 34%] 601s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_partial_compound[False-com-group-residues] PASSED [ 34%] 601s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_partial_compound[False-com-group-segments] PASSED [ 34%] 601s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_partial_compound[False-com-segments-atoms] PASSED [ 34%] 601s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_partial_compound[False-com-segments-residues] PASSED [ 34%] 601s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_partial_compound[False-com-segments-segments] PASSED [ 34%] 601s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_partial_compound[False-com-residues-atoms] PASSED [ 34%] 601s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_partial_compound[False-com-residues-residues] PASSED [ 34%] 601s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_partial_compound[False-com-residues-segments] PASSED [ 34%] 601s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_partial_compound[False-com-molecules-atoms] PASSED [ 34%] 601s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_partial_compound[False-com-molecules-residues] PASSED [ 34%] 601s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_partial_compound[False-com-molecules-segments] PASSED [ 34%] 601s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_partial_compound[False-com-fragments-atoms] PASSED [ 34%] 601s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_partial_compound[False-com-fragments-residues] PASSED [ 35%] 601s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_partial_compound[False-com-fragments-segments] PASSED [ 35%] 601s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_partial_compound[False-cog-atoms-atoms] PASSED [ 35%] 601s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_partial_compound[False-cog-atoms-residues] PASSED [ 35%] 601s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_partial_compound[False-cog-atoms-segments] PASSED [ 35%] 601s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_partial_compound[False-cog-group-atoms] PASSED [ 35%] 601s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_partial_compound[False-cog-group-residues] PASSED [ 35%] 601s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_partial_compound[False-cog-group-segments] PASSED [ 35%] 601s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_partial_compound[False-cog-segments-atoms] PASSED [ 35%] 601s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_partial_compound[False-cog-segments-residues] PASSED [ 35%] 601s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_partial_compound[False-cog-segments-segments] PASSED [ 35%] 601s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_partial_compound[False-cog-residues-atoms] PASSED [ 35%] 601s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_partial_compound[False-cog-residues-residues] PASSED [ 35%] 601s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_partial_compound[False-cog-residues-segments] PASSED [ 35%] 601s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_partial_compound[False-cog-molecules-atoms] PASSED [ 35%] 601s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_partial_compound[False-cog-molecules-residues] PASSED [ 35%] 601s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_partial_compound[False-cog-molecules-segments] PASSED [ 35%] 601s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_partial_compound[False-cog-fragments-atoms] PASSED [ 35%] 601s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_partial_compound[False-cog-fragments-residues] PASSED [ 35%] 601s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_partial_compound[False-cog-fragments-segments] PASSED [ 35%] 601s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_partial_compound[True-com-atoms-atoms] PASSED [ 35%] 601s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_partial_compound[True-com-atoms-residues] PASSED [ 35%] 601s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_partial_compound[True-com-atoms-segments] PASSED [ 35%] 601s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_partial_compound[True-com-group-atoms] PASSED [ 35%] 601s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_partial_compound[True-com-group-residues] PASSED [ 35%] 601s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_partial_compound[True-com-group-segments] PASSED [ 35%] 601s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_partial_compound[True-com-segments-atoms] PASSED [ 35%] 601s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_partial_compound[True-com-segments-residues] PASSED [ 35%] 601s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_partial_compound[True-com-segments-segments] PASSED [ 35%] 601s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_partial_compound[True-com-residues-atoms] PASSED [ 35%] 601s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_partial_compound[True-com-residues-residues] PASSED [ 35%] 601s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_partial_compound[True-com-residues-segments] PASSED [ 35%] 601s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_partial_compound[True-com-molecules-atoms] PASSED [ 35%] 601s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_partial_compound[True-com-molecules-residues] PASSED [ 35%] 601s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_partial_compound[True-com-molecules-segments] PASSED [ 35%] 601s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_partial_compound[True-com-fragments-atoms] PASSED [ 35%] 601s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_partial_compound[True-com-fragments-residues] PASSED [ 35%] 601s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_partial_compound[True-com-fragments-segments] PASSED [ 35%] 601s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_partial_compound[True-cog-atoms-atoms] PASSED [ 35%] 601s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_partial_compound[True-cog-atoms-residues] PASSED [ 35%] 601s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_partial_compound[True-cog-atoms-segments] PASSED [ 35%] 601s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_partial_compound[True-cog-group-atoms] PASSED [ 35%] 601s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_partial_compound[True-cog-group-residues] PASSED [ 35%] 601s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_partial_compound[True-cog-group-segments] PASSED [ 35%] 601s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_partial_compound[True-cog-segments-atoms] PASSED [ 35%] 601s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_partial_compound[True-cog-segments-residues] PASSED [ 35%] 601s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_partial_compound[True-cog-segments-segments] PASSED [ 35%] 601s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_partial_compound[True-cog-residues-atoms] PASSED [ 35%] 601s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_partial_compound[True-cog-residues-residues] PASSED [ 35%] 601s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_partial_compound[True-cog-residues-segments] PASSED [ 35%] 601s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_partial_compound[True-cog-molecules-atoms] PASSED [ 35%] 601s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_partial_compound[True-cog-molecules-residues] PASSED [ 35%] 601s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_partial_compound[True-cog-molecules-segments] PASSED [ 35%] 601s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_partial_compound[True-cog-fragments-atoms] PASSED [ 35%] 601s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_partial_compound[True-cog-fragments-residues] PASSED [ 35%] 601s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_partial_compound[True-cog-fragments-segments] PASSED [ 35%] 601s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_empty_group[False-com-atoms-atoms] PASSED [ 35%] 601s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_empty_group[False-com-atoms-residues] PASSED [ 35%] 601s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_empty_group[False-com-atoms-segments] PASSED [ 35%] 601s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_empty_group[False-com-group-atoms] PASSED [ 35%] 601s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_empty_group[False-com-group-residues] PASSED [ 35%] 601s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_empty_group[False-com-group-segments] PASSED [ 35%] 601s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_empty_group[False-com-segments-atoms] PASSED [ 35%] 601s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_empty_group[False-com-segments-residues] PASSED [ 35%] 601s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_empty_group[False-com-segments-segments] PASSED [ 35%] 601s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_empty_group[False-com-residues-atoms] PASSED [ 35%] 601s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_empty_group[False-com-residues-residues] PASSED [ 35%] 601s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_empty_group[False-com-residues-segments] PASSED [ 35%] 601s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_empty_group[False-com-molecules-atoms] PASSED [ 35%] 601s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_empty_group[False-com-molecules-residues] PASSED [ 35%] 601s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_empty_group[False-com-molecules-segments] PASSED [ 35%] 601s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_empty_group[False-com-fragments-atoms] PASSED [ 35%] 601s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_empty_group[False-com-fragments-residues] PASSED [ 35%] 601s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_empty_group[False-com-fragments-segments] PASSED [ 35%] 601s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_empty_group[False-cog-atoms-atoms] PASSED [ 35%] 601s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_empty_group[False-cog-atoms-residues] PASSED [ 35%] 601s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_empty_group[False-cog-atoms-segments] PASSED [ 35%] 601s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_empty_group[False-cog-group-atoms] PASSED [ 35%] 601s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_empty_group[False-cog-group-residues] PASSED [ 35%] 601s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_empty_group[False-cog-group-segments] PASSED [ 35%] 601s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_empty_group[False-cog-segments-atoms] PASSED [ 35%] 601s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_empty_group[False-cog-segments-residues] PASSED [ 35%] 601s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_empty_group[False-cog-segments-segments] PASSED [ 35%] 601s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_empty_group[False-cog-residues-atoms] PASSED [ 35%] 601s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_empty_group[False-cog-residues-residues] PASSED [ 35%] 601s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_empty_group[False-cog-residues-segments] PASSED [ 35%] 601s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_empty_group[False-cog-molecules-atoms] PASSED [ 35%] 601s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_empty_group[False-cog-molecules-residues] PASSED [ 35%] 601s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_empty_group[False-cog-molecules-segments] PASSED [ 35%] 601s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_empty_group[False-cog-fragments-atoms] PASSED [ 35%] 601s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_empty_group[False-cog-fragments-residues] PASSED [ 35%] 601s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_empty_group[False-cog-fragments-segments] PASSED [ 35%] 601s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_empty_group[True-com-atoms-atoms] PASSED [ 35%] 601s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_empty_group[True-com-atoms-residues] PASSED [ 35%] 601s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_empty_group[True-com-atoms-segments] PASSED [ 35%] 601s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_empty_group[True-com-group-atoms] PASSED [ 35%] 601s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_empty_group[True-com-group-residues] PASSED [ 35%] 601s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_empty_group[True-com-group-segments] PASSED [ 35%] 601s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_empty_group[True-com-segments-atoms] PASSED [ 35%] 601s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_empty_group[True-com-segments-residues] PASSED [ 35%] 601s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_empty_group[True-com-segments-segments] PASSED [ 35%] 601s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_empty_group[True-com-residues-atoms] PASSED [ 35%] 601s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_empty_group[True-com-residues-residues] PASSED [ 35%] 601s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_empty_group[True-com-residues-segments] PASSED [ 35%] 601s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_empty_group[True-com-molecules-atoms] PASSED [ 35%] 601s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_empty_group[True-com-molecules-residues] PASSED [ 35%] 601s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_empty_group[True-com-molecules-segments] PASSED [ 35%] 601s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_empty_group[True-com-fragments-atoms] PASSED [ 35%] 601s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_empty_group[True-com-fragments-residues] PASSED [ 35%] 601s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_empty_group[True-com-fragments-segments] PASSED [ 35%] 601s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_empty_group[True-cog-atoms-atoms] PASSED [ 35%] 601s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_empty_group[True-cog-atoms-residues] PASSED [ 35%] 601s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_empty_group[True-cog-atoms-segments] PASSED [ 35%] 601s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_empty_group[True-cog-group-atoms] PASSED [ 35%] 601s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_empty_group[True-cog-group-residues] PASSED [ 35%] 601s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_empty_group[True-cog-group-segments] PASSED [ 35%] 601s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_empty_group[True-cog-segments-atoms] PASSED [ 35%] 601s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_empty_group[True-cog-segments-residues] PASSED [ 35%] 601s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_empty_group[True-cog-segments-segments] PASSED [ 35%] 601s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_empty_group[True-cog-residues-atoms] PASSED [ 35%] 601s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_empty_group[True-cog-residues-residues] PASSED [ 35%] 601s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_empty_group[True-cog-residues-segments] PASSED [ 35%] 601s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_empty_group[True-cog-molecules-atoms] PASSED [ 35%] 601s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_empty_group[True-cog-molecules-residues] PASSED [ 35%] 601s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_empty_group[True-cog-molecules-segments] PASSED [ 35%] 601s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_empty_group[True-cog-fragments-atoms] PASSED [ 35%] 601s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_empty_group[True-cog-fragments-residues] PASSED [ 35%] 601s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_empty_group[True-cog-fragments-segments] PASSED [ 35%] 601s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_duplicates[False-com-atoms-atoms] PASSED [ 35%] 601s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_duplicates[False-com-atoms-residues] PASSED [ 35%] 601s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_duplicates[False-com-atoms-segments] PASSED [ 35%] 601s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_duplicates[False-com-group-atoms] PASSED [ 35%] 601s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_duplicates[False-com-group-residues] PASSED [ 35%] 601s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_duplicates[False-com-group-segments] PASSED [ 35%] 601s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_duplicates[False-com-segments-atoms] PASSED [ 35%] 601s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_duplicates[False-com-segments-residues] PASSED [ 35%] 601s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_duplicates[False-com-segments-segments] PASSED [ 35%] 601s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_duplicates[False-com-residues-atoms] PASSED [ 35%] 601s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_duplicates[False-com-residues-residues] PASSED [ 35%] 601s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_duplicates[False-com-residues-segments] PASSED [ 35%] 601s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_duplicates[False-com-molecules-atoms] PASSED [ 35%] 601s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_duplicates[False-com-molecules-residues] PASSED [ 35%] 601s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_duplicates[False-com-molecules-segments] PASSED [ 35%] 601s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_duplicates[False-com-fragments-atoms] PASSED [ 35%] 601s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_duplicates[False-com-fragments-residues] PASSED [ 35%] 601s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_duplicates[False-com-fragments-segments] PASSED [ 35%] 601s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_duplicates[False-cog-atoms-atoms] PASSED [ 35%] 601s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_duplicates[False-cog-atoms-residues] PASSED [ 35%] 601s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_duplicates[False-cog-atoms-segments] PASSED [ 35%] 601s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_duplicates[False-cog-group-atoms] PASSED [ 35%] 601s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_duplicates[False-cog-group-residues] PASSED [ 35%] 601s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_duplicates[False-cog-group-segments] PASSED [ 35%] 601s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_duplicates[False-cog-segments-atoms] PASSED [ 35%] 601s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_duplicates[False-cog-segments-residues] PASSED [ 35%] 601s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_duplicates[False-cog-segments-segments] PASSED [ 35%] 601s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_duplicates[False-cog-residues-atoms] PASSED [ 35%] 601s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_duplicates[False-cog-residues-residues] PASSED [ 35%] 601s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_duplicates[False-cog-residues-segments] PASSED [ 35%] 601s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_duplicates[False-cog-molecules-atoms] PASSED [ 35%] 601s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_duplicates[False-cog-molecules-residues] PASSED [ 35%] 601s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_duplicates[False-cog-molecules-segments] PASSED [ 35%] 601s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_duplicates[False-cog-fragments-atoms] PASSED [ 35%] 601s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_duplicates[False-cog-fragments-residues] PASSED [ 35%] 601s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_duplicates[False-cog-fragments-segments] PASSED [ 35%] 601s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_duplicates[True-com-atoms-atoms] PASSED [ 35%] 601s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_duplicates[True-com-atoms-residues] PASSED [ 35%] 601s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_duplicates[True-com-atoms-segments] PASSED [ 35%] 601s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_duplicates[True-com-group-atoms] PASSED [ 35%] 601s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_duplicates[True-com-group-residues] PASSED [ 35%] 601s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_duplicates[True-com-group-segments] PASSED [ 35%] 601s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_duplicates[True-com-segments-atoms] PASSED [ 35%] 601s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_duplicates[True-com-segments-residues] PASSED [ 35%] 601s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_duplicates[True-com-segments-segments] PASSED [ 35%] 601s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_duplicates[True-com-residues-atoms] PASSED [ 35%] 601s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_duplicates[True-com-residues-residues] PASSED [ 35%] 601s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_duplicates[True-com-residues-segments] PASSED [ 35%] 601s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_duplicates[True-com-molecules-atoms] PASSED [ 35%] 601s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_duplicates[True-com-molecules-residues] PASSED [ 35%] 601s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_duplicates[True-com-molecules-segments] PASSED [ 35%] 601s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_duplicates[True-com-fragments-atoms] PASSED [ 35%] 601s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_duplicates[True-com-fragments-residues] PASSED [ 35%] 601s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_duplicates[True-com-fragments-segments] PASSED [ 35%] 601s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_duplicates[True-cog-atoms-atoms] PASSED [ 35%] 601s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_duplicates[True-cog-atoms-residues] PASSED [ 35%] 601s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_duplicates[True-cog-atoms-segments] PASSED [ 36%] 601s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_duplicates[True-cog-group-atoms] PASSED [ 36%] 601s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_duplicates[True-cog-group-residues] PASSED [ 36%] 601s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_duplicates[True-cog-group-segments] PASSED [ 36%] 601s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_duplicates[True-cog-segments-atoms] PASSED [ 36%] 601s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_duplicates[True-cog-segments-residues] PASSED [ 36%] 601s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_duplicates[True-cog-segments-segments] PASSED [ 36%] 601s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_duplicates[True-cog-residues-atoms] PASSED [ 36%] 601s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_duplicates[True-cog-residues-residues] PASSED [ 36%] 601s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_duplicates[True-cog-residues-segments] PASSED [ 36%] 601s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_duplicates[True-cog-molecules-atoms] PASSED [ 36%] 601s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_duplicates[True-cog-molecules-residues] PASSED [ 36%] 601s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_duplicates[True-cog-molecules-segments] PASSED [ 36%] 601s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_duplicates[True-cog-fragments-atoms] PASSED [ 36%] 601s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_duplicates[True-cog-fragments-residues] PASSED [ 36%] 601s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_duplicates[True-cog-fragments-segments] PASSED [ 36%] 601s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_com_cog_difference[False-atoms] PASSED [ 36%] 601s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_com_cog_difference[False-group] PASSED [ 36%] 601s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_com_cog_difference[False-segments] PASSED [ 36%] 601s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_com_cog_difference[False-residues] PASSED [ 36%] 601s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_com_cog_difference[False-molecules] PASSED [ 36%] 601s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_com_cog_difference[False-fragments] PASSED [ 36%] 601s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_com_cog_difference[True-atoms] PASSED [ 36%] 601s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_com_cog_difference[True-group] PASSED [ 36%] 601s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_com_cog_difference[True-segments] PASSED [ 36%] 601s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_com_cog_difference[True-residues] PASSED [ 36%] 601s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_com_cog_difference[True-molecules] PASSED [ 36%] 601s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_com_cog_difference[True-fragments] PASSED [ 36%] 601s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_zero_mass_exception_safety[atoms-atoms] PASSED [ 36%] 601s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_zero_mass_exception_safety[atoms-residues] PASSED [ 36%] 601s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_zero_mass_exception_safety[atoms-segments] PASSED [ 36%] 601s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_zero_mass_exception_safety[group-atoms] PASSED [ 36%] 601s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_zero_mass_exception_safety[group-residues] PASSED [ 36%] 601s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_zero_mass_exception_safety[group-segments] PASSED [ 36%] 601s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_zero_mass_exception_safety[segments-atoms] PASSED [ 36%] 601s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_zero_mass_exception_safety[segments-residues] PASSED [ 36%] 601s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_zero_mass_exception_safety[segments-segments] PASSED [ 36%] 601s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_zero_mass_exception_safety[residues-atoms] PASSED [ 36%] 601s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_zero_mass_exception_safety[residues-residues] PASSED [ 36%] 601s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_zero_mass_exception_safety[residues-segments] PASSED [ 36%] 601s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_zero_mass_exception_safety[molecules-atoms] PASSED [ 36%] 601s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_zero_mass_exception_safety[molecules-residues] PASSED [ 36%] 601s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_zero_mass_exception_safety[molecules-segments] PASSED [ 36%] 601s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_zero_mass_exception_safety[fragments-atoms] PASSED [ 36%] 601s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_zero_mass_exception_safety[fragments-residues] PASSED [ 36%] 601s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_zero_mass_exception_safety[fragments-segments] PASSED [ 36%] 601s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_wrong_center_exception_safety[atoms-atoms] PASSED [ 36%] 601s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_wrong_center_exception_safety[atoms-residues] PASSED [ 36%] 601s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_wrong_center_exception_safety[atoms-segments] PASSED [ 36%] 601s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_wrong_center_exception_safety[group-atoms] PASSED [ 36%] 601s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_wrong_center_exception_safety[group-residues] PASSED [ 36%] 601s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_wrong_center_exception_safety[group-segments] PASSED [ 36%] 601s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_wrong_center_exception_safety[segments-atoms] PASSED [ 36%] 601s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_wrong_center_exception_safety[segments-residues] PASSED [ 36%] 601s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_wrong_center_exception_safety[segments-segments] PASSED [ 36%] 601s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_wrong_center_exception_safety[residues-atoms] PASSED [ 36%] 601s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_wrong_center_exception_safety[residues-residues] PASSED [ 36%] 601s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_wrong_center_exception_safety[residues-segments] PASSED [ 36%] 601s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_wrong_center_exception_safety[molecules-atoms] PASSED [ 36%] 601s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_wrong_center_exception_safety[molecules-residues] PASSED [ 36%] 601s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_wrong_center_exception_safety[molecules-segments] PASSED [ 36%] 601s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_wrong_center_exception_safety[fragments-atoms] PASSED [ 36%] 601s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_wrong_center_exception_safety[fragments-residues] PASSED [ 36%] 601s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_wrong_center_exception_safety[fragments-segments] PASSED [ 36%] 601s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_wrong_compound_exception_safety[com-atoms] PASSED [ 36%] 601s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_wrong_compound_exception_safety[com-residues] PASSED [ 36%] 601s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_wrong_compound_exception_safety[com-segments] PASSED [ 36%] 601s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_wrong_compound_exception_safety[cog-atoms] PASSED [ 36%] 601s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_wrong_compound_exception_safety[cog-residues] PASSED [ 36%] 601s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_wrong_compound_exception_safety[cog-segments] PASSED [ 36%] 601s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_unwrap_no_masses_exception_safety[atoms-atoms] PASSED [ 36%] 601s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_unwrap_no_masses_exception_safety[atoms-residues] PASSED [ 36%] 601s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_unwrap_no_masses_exception_safety[atoms-segments] PASSED [ 36%] 601s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_unwrap_no_masses_exception_safety[group-atoms] PASSED [ 36%] 601s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_unwrap_no_masses_exception_safety[group-residues] PASSED [ 36%] 601s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_unwrap_no_masses_exception_safety[group-segments] PASSED [ 36%] 601s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_unwrap_no_masses_exception_safety[segments-atoms] PASSED [ 36%] 601s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_unwrap_no_masses_exception_safety[segments-residues] PASSED [ 36%] 601s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_unwrap_no_masses_exception_safety[segments-segments] PASSED [ 36%] 601s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_unwrap_no_masses_exception_safety[residues-atoms] PASSED [ 36%] 601s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_unwrap_no_masses_exception_safety[residues-residues] PASSED [ 36%] 601s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_unwrap_no_masses_exception_safety[residues-segments] PASSED [ 36%] 601s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_unwrap_no_masses_exception_safety[molecules-atoms] PASSED [ 36%] 601s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_unwrap_no_masses_exception_safety[molecules-residues] PASSED [ 36%] 601s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_unwrap_no_masses_exception_safety[molecules-segments] PASSED [ 36%] 601s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_unwrap_no_masses_exception_safety[fragments-atoms] PASSED [ 36%] 601s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_unwrap_no_masses_exception_safety[fragments-residues] PASSED [ 36%] 601s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_unwrap_no_masses_exception_safety[fragments-segments] PASSED [ 36%] 601s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_no_bonds_exception_safety[com-atoms-atoms] PASSED [ 36%] 601s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_no_bonds_exception_safety[com-atoms-residues] PASSED [ 36%] 601s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_no_bonds_exception_safety[com-atoms-segments] PASSED [ 36%] 601s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_no_bonds_exception_safety[com-group-atoms] PASSED [ 36%] 601s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_no_bonds_exception_safety[com-group-residues] PASSED [ 36%] 601s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_no_bonds_exception_safety[com-group-segments] PASSED [ 36%] 601s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_no_bonds_exception_safety[com-segments-atoms] PASSED [ 36%] 601s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_no_bonds_exception_safety[com-segments-residues] PASSED [ 36%] 601s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_no_bonds_exception_safety[com-segments-segments] PASSED [ 36%] 601s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_no_bonds_exception_safety[com-residues-atoms] PASSED [ 36%] 601s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_no_bonds_exception_safety[com-residues-residues] PASSED [ 36%] 601s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_no_bonds_exception_safety[com-residues-segments] PASSED [ 36%] 601s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_no_bonds_exception_safety[com-molecules-atoms] PASSED [ 36%] 601s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_no_bonds_exception_safety[com-molecules-residues] PASSED [ 36%] 601s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_no_bonds_exception_safety[com-molecules-segments] PASSED [ 36%] 601s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_no_bonds_exception_safety[com-fragments-atoms] PASSED [ 36%] 601s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_no_bonds_exception_safety[com-fragments-residues] PASSED [ 36%] 601s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_no_bonds_exception_safety[com-fragments-segments] PASSED [ 36%] 601s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_no_bonds_exception_safety[cog-atoms-atoms] PASSED [ 36%] 601s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_no_bonds_exception_safety[cog-atoms-residues] PASSED [ 36%] 601s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_no_bonds_exception_safety[cog-atoms-segments] PASSED [ 36%] 601s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_no_bonds_exception_safety[cog-group-atoms] PASSED [ 36%] 601s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_no_bonds_exception_safety[cog-group-residues] PASSED [ 36%] 601s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_no_bonds_exception_safety[cog-group-segments] PASSED [ 36%] 601s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_no_bonds_exception_safety[cog-segments-atoms] PASSED [ 36%] 601s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_no_bonds_exception_safety[cog-segments-residues] PASSED [ 36%] 601s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_no_bonds_exception_safety[cog-segments-segments] PASSED [ 36%] 601s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_no_bonds_exception_safety[cog-residues-atoms] PASSED [ 36%] 601s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_no_bonds_exception_safety[cog-residues-residues] PASSED [ 36%] 601s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_no_bonds_exception_safety[cog-residues-segments] PASSED [ 36%] 601s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_no_bonds_exception_safety[cog-molecules-atoms] PASSED [ 36%] 601s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_no_bonds_exception_safety[cog-molecules-residues] PASSED [ 36%] 601s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_no_bonds_exception_safety[cog-molecules-segments] PASSED [ 36%] 601s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_no_bonds_exception_safety[cog-fragments-atoms] PASSED [ 36%] 601s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_no_bonds_exception_safety[cog-fragments-residues] PASSED [ 36%] 601s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_no_bonds_exception_safety[cog-fragments-segments] PASSED [ 36%] 601s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_no_molnums_exception_safety[com-atoms-atoms] PASSED [ 36%] 601s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_no_molnums_exception_safety[com-atoms-residues] PASSED [ 36%] 601s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_no_molnums_exception_safety[com-atoms-segments] PASSED [ 36%] 601s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_no_molnums_exception_safety[com-group-atoms] PASSED [ 36%] 601s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_no_molnums_exception_safety[com-group-residues] PASSED [ 36%] 601s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_no_molnums_exception_safety[com-group-segments] PASSED [ 36%] 601s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_no_molnums_exception_safety[com-segments-atoms] PASSED [ 36%] 601s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_no_molnums_exception_safety[com-segments-residues] PASSED [ 36%] 601s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_no_molnums_exception_safety[com-segments-segments] PASSED [ 36%] 601s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_no_molnums_exception_safety[com-residues-atoms] PASSED [ 36%] 601s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_no_molnums_exception_safety[com-residues-residues] PASSED [ 36%] 601s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_no_molnums_exception_safety[com-residues-segments] PASSED [ 36%] 601s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_no_molnums_exception_safety[com-molecules-atoms] PASSED [ 36%] 601s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_no_molnums_exception_safety[com-molecules-residues] PASSED [ 36%] 601s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_no_molnums_exception_safety[com-molecules-segments] PASSED [ 36%] 601s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_no_molnums_exception_safety[com-fragments-atoms] PASSED [ 36%] 601s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_no_molnums_exception_safety[com-fragments-residues] PASSED [ 36%] 601s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_no_molnums_exception_safety[com-fragments-segments] PASSED [ 36%] 601s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_no_molnums_exception_safety[cog-atoms-atoms] PASSED [ 36%] 601s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_no_molnums_exception_safety[cog-atoms-residues] PASSED [ 36%] 601s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_no_molnums_exception_safety[cog-atoms-segments] PASSED [ 36%] 601s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_no_molnums_exception_safety[cog-group-atoms] PASSED [ 36%] 601s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_no_molnums_exception_safety[cog-group-residues] PASSED [ 36%] 601s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_no_molnums_exception_safety[cog-group-segments] PASSED [ 36%] 601s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_no_molnums_exception_safety[cog-segments-atoms] PASSED [ 36%] 601s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_no_molnums_exception_safety[cog-segments-residues] PASSED [ 36%] 601s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_no_molnums_exception_safety[cog-segments-segments] PASSED [ 36%] 601s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_no_molnums_exception_safety[cog-residues-atoms] PASSED [ 36%] 601s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_no_molnums_exception_safety[cog-residues-residues] PASSED [ 36%] 601s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_no_molnums_exception_safety[cog-residues-segments] PASSED [ 36%] 601s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_no_molnums_exception_safety[cog-molecules-atoms] PASSED [ 36%] 601s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_no_molnums_exception_safety[cog-molecules-residues] PASSED [ 36%] 601s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_no_molnums_exception_safety[cog-molecules-segments] PASSED [ 36%] 601s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_no_molnums_exception_safety[cog-fragments-atoms] PASSED [ 36%] 601s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_no_molnums_exception_safety[cog-fragments-residues] PASSED [ 36%] 601s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_no_molnums_exception_safety[cog-fragments-segments] PASSED [ 36%] 601s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrapTRZ::test_wrap_box_fail[box0] PASSED [ 36%] 602s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrapTRZ::test_wrap_box_fail[box1] PASSED [ 36%] 602s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrapTRZ::test_wrap_small_box PASSED [ 36%] 602s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrapTRZ::test_wrap_large_box PASSED [ 36%] 602s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrapTRZ::test_wrap_atoms PASSED [ 36%] 602s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrapTRZ::test_wrap_group[com] PASSED [ 36%] 602s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrapTRZ::test_wrap_group[cog] PASSED [ 36%] 602s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrapTRZ::test_wrap_residues[com] PASSED [ 36%] 602s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrapTRZ::test_wrap_residues[cog] PASSED [ 36%] 602s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrapTRZ::test_wrap_segments[com] PASSED [ 36%] 602s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrapTRZ::test_wrap_segments[cog] PASSED [ 36%] 602s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrapTRZ::test_wrap_fragments[com] PASSED [ 36%] 603s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrapTRZ::test_wrap_fragments[cog] PASSED [ 36%] 603s testsuite/MDAnalysisTests/formats/test_libdcd.py::test_is_periodic[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/adk_dims.dcd-False] PASSED [ 36%] 603s testsuite/MDAnalysisTests/formats/test_libdcd.py::test_is_periodic[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/SiN_tric_namd.dcd-True] PASSED [ 36%] 603s testsuite/MDAnalysisTests/formats/test_libdcd.py::test_is_periodic[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tip125_tric_C36.dcd-True] PASSED [ 36%] 603s testsuite/MDAnalysisTests/formats/test_libdcd.py::test_read_coordsshape[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/adk_dims.dcd-3341] PASSED [ 36%] 603s testsuite/MDAnalysisTests/formats/test_libdcd.py::test_read_coordsshape[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/SiN_tric_namd.dcd-5545] PASSED [ 36%] 603s testsuite/MDAnalysisTests/formats/test_libdcd.py::test_read_coordsshape[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tip125_tric_C36.dcd-375] PASSED [ 36%] 603s testsuite/MDAnalysisTests/formats/test_libdcd.py::test_read_unit_cell[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/adk_dims.dcd-unit_cell0] PASSED [ 36%] 603s testsuite/MDAnalysisTests/formats/test_libdcd.py::test_read_unit_cell[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/SiN_tric_namd.dcd-unit_cell1] PASSED [ 36%] 603s testsuite/MDAnalysisTests/formats/test_libdcd.py::test_read_unit_cell[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tip125_tric_C36.dcd-unit_cell2] PASSED [ 36%] 603s testsuite/MDAnalysisTests/formats/test_libdcd.py::test_seek_over_max PASSED [ 36%] 603s testsuite/MDAnalysisTests/formats/test_libdcd.py::test_pickle PASSED [ 36%] 603s testsuite/MDAnalysisTests/formats/test_libdcd.py::test_pickle_last PASSED [ 36%] 603s testsuite/MDAnalysisTests/formats/test_libdcd.py::test_pickle_closed PASSED [ 37%] 603s testsuite/MDAnalysisTests/formats/test_libdcd.py::test_pickle_after_read PASSED [ 37%] 603s testsuite/MDAnalysisTests/formats/test_libdcd.py::test_pickle_immediately PASSED [ 37%] 603s testsuite/MDAnalysisTests/formats/test_libdcd.py::test_seek_normal[10] PASSED [ 37%] 603s testsuite/MDAnalysisTests/formats/test_libdcd.py::test_seek_normal[42] PASSED [ 37%] 603s testsuite/MDAnalysisTests/formats/test_libdcd.py::test_seek_normal[21] PASSED [ 37%] 603s testsuite/MDAnalysisTests/formats/test_libdcd.py::test_seek_negative PASSED [ 37%] 603s testsuite/MDAnalysisTests/formats/test_libdcd.py::test_open_wrong_mode PASSED [ 37%] 603s testsuite/MDAnalysisTests/formats/test_libdcd.py::test_raise_not_existing PASSED [ 37%] 603s testsuite/MDAnalysisTests/formats/test_libdcd.py::test_zero_based_frames_counting PASSED [ 37%] 603s testsuite/MDAnalysisTests/formats/test_libdcd.py::test_natoms[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/adk_dims.dcd-3341] PASSED [ 37%] 603s testsuite/MDAnalysisTests/formats/test_libdcd.py::test_natoms[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/SiN_tric_namd.dcd-5545] PASSED [ 37%] 603s testsuite/MDAnalysisTests/formats/test_libdcd.py::test_natoms[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tip125_tric_C36.dcd-375] PASSED [ 37%] 603s testsuite/MDAnalysisTests/formats/test_libdcd.py::test_read_closed PASSED [ 37%] 603s testsuite/MDAnalysisTests/formats/test_libdcd.py::test_length_traj[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/adk_dims.dcd-98] PASSED [ 37%] 603s testsuite/MDAnalysisTests/formats/test_libdcd.py::test_length_traj[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/SiN_tric_namd.dcd-1] PASSED [ 37%] 603s testsuite/MDAnalysisTests/formats/test_libdcd.py::test_length_traj[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tip125_tric_C36.dcd-10] PASSED [ 37%] 603s testsuite/MDAnalysisTests/formats/test_libdcd.py::test_read_write_mode_file PASSED [ 37%] 603s testsuite/MDAnalysisTests/formats/test_libdcd.py::test_header_remarks[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/adk_dims.dcd-* DIMS ADK SEQUENCE FOR PORE PROGRAM * WRITTEN BY LIZ DENNING (6.2008) * DATE: 6/ 6/ 8 17:23:56 CREATED BY USER: denniej0 ] PASSED [ 37%] 603s testsuite/MDAnalysisTests/formats/test_libdcd.py::test_header_remarks[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/SiN_tric_namd.dcd-Created by DCD pluginREMARKS Created 06 July, 2014 at 17:29Y5~CORD,] PASSED [ 37%] 603s testsuite/MDAnalysisTests/formats/test_libdcd.py::test_header_remarks[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tip125_tric_C36.dcd-* CHARMM TRICLINIC BOX TESTING * (OLIVER BECKSTEIN 2014) * BASED ON NPTDYN.INP : SCOTT FELLER, NIH, 7/15/95 * TEST EXTENDED SYSTEM CONSTANT PRESSURE AND TEMPERATURE * DYNAMICS WITH WATER BOX. * DATE: 7/ 7/14 13:59:46 CREATED BY USER: oliver ] PASSED [ 37%] 603s testsuite/MDAnalysisTests/formats/test_libdcd.py::test_read_coord_values[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/adk_dims.dcd-/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/legacy_DCD_adk_coords.npy-frames0] PASSED [ 37%] 603s testsuite/MDAnalysisTests/formats/test_libdcd.py::test_read_coord_values[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/SiN_tric_namd.dcd-/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/legacy_DCD_NAMD_coords.npy-frames1] PASSED [ 37%] 603s testsuite/MDAnalysisTests/formats/test_libdcd.py::test_read_coord_values[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tip125_tric_C36.dcd-/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/legacy_DCD_c36_coords.npy-frames2] PASSED [ 37%] 603s testsuite/MDAnalysisTests/formats/test_libdcd.py::test_readframes[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/adk_dims.dcd-/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/legacy_DCD_adk_coords.npy-frame_idx0] PASSED [ 37%] 603s testsuite/MDAnalysisTests/formats/test_libdcd.py::test_readframes[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/SiN_tric_namd.dcd-/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/legacy_DCD_NAMD_coords.npy-frame_idx1] PASSED [ 37%] 603s testsuite/MDAnalysisTests/formats/test_libdcd.py::test_readframes[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tip125_tric_C36.dcd-/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/legacy_DCD_c36_coords.npy-frame_idx2] PASSED [ 37%] 603s testsuite/MDAnalysisTests/formats/test_libdcd.py::test_write_header PASSED [ 37%] 603s testsuite/MDAnalysisTests/formats/test_libdcd.py::test_write_no_header PASSED [ 37%] 603s testsuite/MDAnalysisTests/formats/test_libdcd.py::test_write_header_twice PASSED [ 37%] 603s testsuite/MDAnalysisTests/formats/test_libdcd.py::test_write_header_wrong_mode PASSED [ 37%] 603s testsuite/MDAnalysisTests/formats/test_libdcd.py::test_write_mode PASSED [ 37%] 604s testsuite/MDAnalysisTests/formats/test_libdcd.py::test_written_remarks_property PASSED [ 37%] 604s testsuite/MDAnalysisTests/formats/test_libdcd.py::test_written_header PASSED [ 37%] 604s testsuite/MDAnalysisTests/formats/test_libdcd.py::test_written_num_frames PASSED [ 37%] 604s testsuite/MDAnalysisTests/formats/test_libdcd.py::test_written_dcd_coordinate_data_shape PASSED [ 37%] 604s testsuite/MDAnalysisTests/formats/test_libdcd.py::test_written_seek PASSED [ 37%] 604s testsuite/MDAnalysisTests/formats/test_libdcd.py::test_written_coord_match PASSED [ 37%] 604s testsuite/MDAnalysisTests/formats/test_libdcd.py::test_written_unit_cell PASSED [ 37%] 604s testsuite/MDAnalysisTests/formats/test_libdcd.py::test_write_all_dtypes[int32] PASSED [ 37%] 604s testsuite/MDAnalysisTests/formats/test_libdcd.py::test_write_all_dtypes[int64] PASSED [ 37%] 604s testsuite/MDAnalysisTests/formats/test_libdcd.py::test_write_all_dtypes[float32] PASSED [ 37%] 604s testsuite/MDAnalysisTests/formats/test_libdcd.py::test_write_all_dtypes[float64] PASSED [ 37%] 604s testsuite/MDAnalysisTests/formats/test_libdcd.py::test_write_all_dtypes[int] PASSED [ 37%] 604s testsuite/MDAnalysisTests/formats/test_libdcd.py::test_write_all_dtypes[float] PASSED [ 37%] 604s testsuite/MDAnalysisTests/formats/test_libdcd.py::test_write_array_like[array] PASSED [ 37%] 604s testsuite/MDAnalysisTests/formats/test_libdcd.py::test_write_array_like[list] PASSED [ 37%] 604s testsuite/MDAnalysisTests/formats/test_libdcd.py::test_write_wrong_shape_xyz PASSED [ 37%] 604s testsuite/MDAnalysisTests/formats/test_libdcd.py::test_write_wrong_shape_box PASSED [ 37%] 604s testsuite/MDAnalysisTests/formats/test_libdcd.py::test_relative_frame_sizes[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/adk_dims.dcd] PASSED [ 37%] 604s testsuite/MDAnalysisTests/formats/test_libdcd.py::test_relative_frame_sizes[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tip125_tric_C36.dcd] PASSED [ 37%] 604s testsuite/MDAnalysisTests/formats/test_libdcd.py::test_relative_frame_sizes[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/SiN_tric_namd.dcd] PASSED [ 37%] 604s testsuite/MDAnalysisTests/formats/test_libdcd.py::test_file_size_breakdown[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/adk_dims.dcd] PASSED [ 37%] 604s testsuite/MDAnalysisTests/formats/test_libdcd.py::test_file_size_breakdown[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tip125_tric_C36.dcd] PASSED [ 37%] 604s testsuite/MDAnalysisTests/formats/test_libdcd.py::test_file_size_breakdown[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/SiN_tric_namd.dcd] PASSED [ 37%] 604s testsuite/MDAnalysisTests/formats/test_libdcd.py::test_nframessize_int[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/adk_dims.dcd] PASSED [ 37%] 604s testsuite/MDAnalysisTests/formats/test_libdcd.py::test_nframessize_int[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tip125_tric_C36.dcd] PASSED [ 37%] 604s testsuite/MDAnalysisTests/formats/test_libdcd.py::test_nframessize_int[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/SiN_tric_namd.dcd] PASSED [ 37%] 604s testsuite/MDAnalysisTests/formats/test_libdcd.py::test_readframes_slices[slice0-98] PASSED [ 37%] 604s testsuite/MDAnalysisTests/formats/test_libdcd.py::test_readframes_slices[slice1-98] PASSED [ 37%] 604s testsuite/MDAnalysisTests/formats/test_libdcd.py::test_readframes_slices[slice2-98] PASSED [ 37%] 604s testsuite/MDAnalysisTests/formats/test_libdcd.py::test_readframes_slices[slice3-98] PASSED [ 37%] 604s testsuite/MDAnalysisTests/formats/test_libdcd.py::test_readframes_slices[slice4-98] PASSED [ 37%] 604s testsuite/MDAnalysisTests/formats/test_libdcd.py::test_readframes_slices[slice5-2] PASSED [ 37%] 604s testsuite/MDAnalysisTests/formats/test_libdcd.py::test_readframes_slices[slice6-10] PASSED [ 37%] 604s testsuite/MDAnalysisTests/formats/test_libdcd.py::test_readframes_slices[slice7-8] PASSED [ 37%] 604s testsuite/MDAnalysisTests/formats/test_libdcd.py::test_readframes_slices[slice8-1] PASSED [ 37%] 604s testsuite/MDAnalysisTests/formats/test_libdcd.py::test_readframes_slices[slice9-0] PASSED [ 37%] 604s testsuite/MDAnalysisTests/formats/test_libdcd.py::test_readframes_slices[slice10-1] PASSED [ 37%] 604s testsuite/MDAnalysisTests/formats/test_libdcd.py::test_readframes_slices[slice11-1] PASSED [ 37%] 604s testsuite/MDAnalysisTests/formats/test_libdcd.py::test_readframes_slices[slice12-2] PASSED [ 37%] 604s testsuite/MDAnalysisTests/formats/test_libdcd.py::test_readframes_slices[slice13-1] PASSED [ 37%] 604s testsuite/MDAnalysisTests/formats/test_libdcd.py::test_readframes_slices[slice14-1] PASSED [ 37%] 604s testsuite/MDAnalysisTests/formats/test_libdcd.py::test_readframes_slices[slice15-2] PASSED [ 37%] 604s testsuite/MDAnalysisTests/formats/test_libdcd.py::test_readframes_slices[slice16-4] PASSED [ 37%] 604s testsuite/MDAnalysisTests/formats/test_libdcd.py::test_readframes_slices[slice17-3] PASSED [ 37%] 604s testsuite/MDAnalysisTests/formats/test_libdcd.py::test_readframes_slices[slice18-2] PASSED [ 37%] 604s testsuite/MDAnalysisTests/formats/test_libdcd.py::test_readframes_order[fac-shape0] PASSED [ 37%] 604s testsuite/MDAnalysisTests/formats/test_libdcd.py::test_readframes_order[fca-shape1] PASSED [ 37%] 604s testsuite/MDAnalysisTests/formats/test_libdcd.py::test_readframes_order[afc-shape2] PASSED [ 37%] 604s testsuite/MDAnalysisTests/formats/test_libdcd.py::test_readframes_order[acf-shape3] PASSED [ 37%] 604s testsuite/MDAnalysisTests/formats/test_libdcd.py::test_readframes_order[caf-shape4] PASSED [ 37%] 604s testsuite/MDAnalysisTests/formats/test_libdcd.py::test_readframes_order[cfa-shape5] PASSED [ 37%] 604s testsuite/MDAnalysisTests/formats/test_libdcd.py::test_readframes_atomindices[indices0] PASSED [ 37%] 604s testsuite/MDAnalysisTests/formats/test_libdcd.py::test_readframes_atomindices[indices1] PASSED [ 37%] 604s testsuite/MDAnalysisTests/formats/test_libdcd.py::test_readframes_atomindices[indices2] PASSED [ 37%] 604s testsuite/MDAnalysisTests/formats/test_libdcd.py::test_write_random_unitcell PASSED [ 37%] 604s testsuite/MDAnalysisTests/formats/test_libmdaxdr.py::TestCommonAPI::test_natoms[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/xtc_test_only_10_frame_10_atoms.xtc-XTCFile] PASSED [ 37%] 604s testsuite/MDAnalysisTests/formats/test_libmdaxdr.py::TestCommonAPI::test_natoms[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/trr_test_only_10_frame_10_atoms.trr-TRRFile] PASSED [ 37%] 604s testsuite/MDAnalysisTests/formats/test_libmdaxdr.py::TestCommonAPI::test_over_seek[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/xtc_test_only_10_frame_10_atoms.xtc-XTCFile] PASSED [ 37%] 604s testsuite/MDAnalysisTests/formats/test_libmdaxdr.py::TestCommonAPI::test_over_seek[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/trr_test_only_10_frame_10_atoms.trr-TRRFile] PASSED [ 37%] 604s testsuite/MDAnalysisTests/formats/test_libmdaxdr.py::TestCommonAPI::test_read_after_iteration[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/xtc_test_only_10_frame_10_atoms.xtc-XTCFile] PASSED [ 37%] 604s testsuite/MDAnalysisTests/formats/test_libmdaxdr.py::TestCommonAPI::test_read_after_iteration[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/trr_test_only_10_frame_10_atoms.trr-TRRFile] PASSED [ 37%] 604s testsuite/MDAnalysisTests/formats/test_libmdaxdr.py::TestCommonAPI::test_zero_based_frame_tell[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/xtc_test_only_10_frame_10_atoms.xtc-XTCFile] PASSED [ 37%] 604s testsuite/MDAnalysisTests/formats/test_libmdaxdr.py::TestCommonAPI::test_zero_based_frame_tell[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/trr_test_only_10_frame_10_atoms.trr-TRRFile] PASSED [ 37%] 604s testsuite/MDAnalysisTests/formats/test_libmdaxdr.py::TestCommonAPI::test_read_closed[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/xtc_test_only_10_frame_10_atoms.xtc-XTCFile] PASSED [ 37%] 604s testsuite/MDAnalysisTests/formats/test_libmdaxdr.py::TestCommonAPI::test_read_closed[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/trr_test_only_10_frame_10_atoms.trr-TRRFile] PASSED [ 37%] 604s testsuite/MDAnalysisTests/formats/test_libmdaxdr.py::TestCommonAPI::test_double_iter[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/xtc_test_only_10_frame_10_atoms.xtc-XTCFile] PASSED [ 37%] 604s testsuite/MDAnalysisTests/formats/test_libmdaxdr.py::TestCommonAPI::test_double_iter[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/trr_test_only_10_frame_10_atoms.trr-TRRFile] PASSED [ 37%] 604s testsuite/MDAnalysisTests/formats/test_libmdaxdr.py::TestCommonAPI::test_seek[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/xtc_test_only_10_frame_10_atoms.xtc-XTCFile] PASSED [ 37%] 604s testsuite/MDAnalysisTests/formats/test_libmdaxdr.py::TestCommonAPI::test_seek[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/trr_test_only_10_frame_10_atoms.trr-TRRFile] PASSED [ 37%] 604s testsuite/MDAnalysisTests/formats/test_libmdaxdr.py::TestCommonAPI::test_seek_negative[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/xtc_test_only_10_frame_10_atoms.xtc-XTCFile] PASSED [ 37%] 604s testsuite/MDAnalysisTests/formats/test_libmdaxdr.py::TestCommonAPI::test_seek_negative[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/trr_test_only_10_frame_10_atoms.trr-TRRFile] PASSED [ 37%] 604s testsuite/MDAnalysisTests/formats/test_libmdaxdr.py::TestCommonAPI::test_len[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/xtc_test_only_10_frame_10_atoms.xtc-XTCFile] PASSED [ 37%] 604s testsuite/MDAnalysisTests/formats/test_libmdaxdr.py::TestCommonAPI::test_len[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/trr_test_only_10_frame_10_atoms.trr-TRRFile] PASSED [ 37%] 604s testsuite/MDAnalysisTests/formats/test_libmdaxdr.py::TestCommonAPI::test_raise_not_existing[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/xtc_test_only_10_frame_10_atoms.xtc-XTCFile] PASSED [ 37%] 604s testsuite/MDAnalysisTests/formats/test_libmdaxdr.py::TestCommonAPI::test_raise_not_existing[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/trr_test_only_10_frame_10_atoms.trr-TRRFile] PASSED [ 37%] 604s testsuite/MDAnalysisTests/formats/test_libmdaxdr.py::TestCommonAPI::test_open_wrong_mode[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/xtc_test_only_10_frame_10_atoms.xtc-XTCFile] PASSED [ 37%] 604s testsuite/MDAnalysisTests/formats/test_libmdaxdr.py::TestCommonAPI::test_open_wrong_mode[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/trr_test_only_10_frame_10_atoms.trr-TRRFile] PASSED [ 37%] 604s testsuite/MDAnalysisTests/formats/test_libmdaxdr.py::TestCommonAPI::test_read_write_mode_file[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/xtc_test_only_10_frame_10_atoms.xtc-XTCFile] PASSED [ 37%] 604s testsuite/MDAnalysisTests/formats/test_libmdaxdr.py::TestCommonAPI::test_read_write_mode_file[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/trr_test_only_10_frame_10_atoms.trr-TRRFile] PASSED [ 37%] 604s testsuite/MDAnalysisTests/formats/test_libmdaxdr.py::TestCommonAPI::test_pickle[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/xtc_test_only_10_frame_10_atoms.xtc-XTCFile] PASSED [ 37%] 604s testsuite/MDAnalysisTests/formats/test_libmdaxdr.py::TestCommonAPI::test_pickle[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/trr_test_only_10_frame_10_atoms.trr-TRRFile] PASSED [ 37%] 604s testsuite/MDAnalysisTests/formats/test_libmdaxdr.py::TestCommonAPI::test_pickle_last_frame[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/xtc_test_only_10_frame_10_atoms.xtc-XTCFile] PASSED [ 37%] 604s testsuite/MDAnalysisTests/formats/test_libmdaxdr.py::TestCommonAPI::test_pickle_last_frame[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/trr_test_only_10_frame_10_atoms.trr-TRRFile] PASSED [ 37%] 604s testsuite/MDAnalysisTests/formats/test_libmdaxdr.py::TestCommonAPI::test_pickle_closed[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/xtc_test_only_10_frame_10_atoms.xtc-XTCFile] PASSED [ 37%] 604s testsuite/MDAnalysisTests/formats/test_libmdaxdr.py::TestCommonAPI::test_pickle_closed[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/trr_test_only_10_frame_10_atoms.trr-TRRFile] PASSED [ 37%] 604s testsuite/MDAnalysisTests/formats/test_libmdaxdr.py::TestCommonAPI::test_pickle_immediately[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/xtc_test_only_10_frame_10_atoms.xtc-XTCFile] PASSED [ 37%] 604s testsuite/MDAnalysisTests/formats/test_libmdaxdr.py::TestCommonAPI::test_pickle_immediately[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/trr_test_only_10_frame_10_atoms.trr-TRRFile] PASSED [ 37%] 604s testsuite/MDAnalysisTests/formats/test_libmdaxdr.py::TestOffsets::test_offset[XTCFile-/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/xtc_test_only_10_frame_10_atoms.xtc-offsets0] PASSED [ 37%] 604s testsuite/MDAnalysisTests/formats/test_libmdaxdr.py::TestOffsets::test_offset[TRRFile-/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/trr_test_only_10_frame_10_atoms.trr-offsets1] PASSED [ 37%] 604s testsuite/MDAnalysisTests/formats/test_libmdaxdr.py::TestOffsets::test_set_offsets[XTCFile-/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/xtc_test_only_10_frame_10_atoms.xtc-offsets0] PASSED [ 37%] 604s testsuite/MDAnalysisTests/formats/test_libmdaxdr.py::TestOffsets::test_set_offsets[TRRFile-/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/trr_test_only_10_frame_10_atoms.trr-offsets1] PASSED [ 37%] 604s testsuite/MDAnalysisTests/formats/test_libmdaxdr.py::TestOffsets::test_fail_wrong_offsets[XTCFile-/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/xtc_test_only_10_frame_10_atoms.xtc-offsets0] PASSED [ 37%] 604s testsuite/MDAnalysisTests/formats/test_libmdaxdr.py::TestOffsets::test_fail_wrong_offsets[TRRFile-/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/trr_test_only_10_frame_10_atoms.trr-offsets1] PASSED [ 37%] 604s testsuite/MDAnalysisTests/formats/test_libmdaxdr.py::TestOffsets::test_seek_overflow[XTCFile-/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/xtc_test_only_10_frame_10_atoms.xtc-offsets0] PASSED [ 37%] 604s testsuite/MDAnalysisTests/formats/test_libmdaxdr.py::TestOffsets::test_seek_overflow[TRRFile-/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/trr_test_only_10_frame_10_atoms.trr-offsets1] PASSED [ 37%] 604s testsuite/MDAnalysisTests/formats/test_libmdaxdr.py::TestOffsets::test_seek_tell_all[XTCFile-/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/xtc_test_only_10_frame_10_atoms.xtc-offsets0] PASSED [ 37%] 604s testsuite/MDAnalysisTests/formats/test_libmdaxdr.py::TestOffsets::test_seek_tell_all[TRRFile-/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/trr_test_only_10_frame_10_atoms.trr-offsets1] PASSED [ 37%] 604s testsuite/MDAnalysisTests/formats/test_libmdaxdr.py::TestOffsets::test_seek_tell_all_bytes[XTCFile-/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/xtc_test_only_10_frame_10_atoms.xtc-offsets0] PASSED [ 37%] 604s testsuite/MDAnalysisTests/formats/test_libmdaxdr.py::TestOffsets::test_seek_tell_all_bytes[TRRFile-/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/trr_test_only_10_frame_10_atoms.trr-offsets1] PASSED [ 37%] 604s testsuite/MDAnalysisTests/formats/test_libmdaxdr.py::TestOffsets::test_seek_tell_largefile[XTCFile-/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/xtc_test_only_10_frame_10_atoms.xtc-offsets0] PASSED [ 37%] 604s testsuite/MDAnalysisTests/formats/test_libmdaxdr.py::TestOffsets::test_seek_tell_largefile[TRRFile-/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/trr_test_only_10_frame_10_atoms.trr-offsets1] PASSED [ 37%] 604s testsuite/MDAnalysisTests/formats/test_libmdaxdr.py::test_steps[XTCFile-/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/xtc_test_only_10_frame_10_atoms.xtc] PASSED [ 37%] 604s testsuite/MDAnalysisTests/formats/test_libmdaxdr.py::test_steps[TRRFile-/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/trr_test_only_10_frame_10_atoms.trr] PASSED [ 37%] 604s testsuite/MDAnalysisTests/formats/test_libmdaxdr.py::test_box_xtc PASSED [ 37%] 604s testsuite/MDAnalysisTests/formats/test_libmdaxdr.py::test_xyz_xtc PASSED [ 37%] 604s testsuite/MDAnalysisTests/formats/test_libmdaxdr.py::test_box_trr PASSED [ 37%] 604s testsuite/MDAnalysisTests/formats/test_libmdaxdr.py::test_xyz_trr PASSED [ 37%] 604s testsuite/MDAnalysisTests/formats/test_libmdaxdr.py::test_velocities_trr PASSED [ 37%] 604s testsuite/MDAnalysisTests/formats/test_libmdaxdr.py::test_forces_trr PASSED [ 37%] 604s testsuite/MDAnalysisTests/formats/test_libmdaxdr.py::test_lmbda_trr PASSED [ 37%] 604s testsuite/MDAnalysisTests/formats/test_libmdaxdr.py::test_written_step_xtc PASSED [ 37%] 604s testsuite/MDAnalysisTests/formats/test_libmdaxdr.py::test_written_time_xtc PASSED [ 37%] 604s testsuite/MDAnalysisTests/formats/test_libmdaxdr.py::test_written_prec_xtc PASSED [ 37%] 604s testsuite/MDAnalysisTests/formats/test_libmdaxdr.py::test_written_box_xtc PASSED [ 37%] 604s testsuite/MDAnalysisTests/formats/test_libmdaxdr.py::test_written_xyx_xtc PASSED [ 37%] 604s testsuite/MDAnalysisTests/formats/test_libmdaxdr.py::test_write_xtc_dtype[int32] PASSED [ 37%] 604s testsuite/MDAnalysisTests/formats/test_libmdaxdr.py::test_write_xtc_dtype[int64] PASSED [ 37%] 604s testsuite/MDAnalysisTests/formats/test_libmdaxdr.py::test_write_xtc_dtype[float32] PASSED [ 37%] 604s testsuite/MDAnalysisTests/formats/test_libmdaxdr.py::test_write_xtc_dtype[float64] PASSED [ 37%] 604s testsuite/MDAnalysisTests/formats/test_libmdaxdr.py::test_write_xtc_dtype[int] PASSED [ 37%] 604s testsuite/MDAnalysisTests/formats/test_libmdaxdr.py::test_write_xtc_dtype[float] PASSED [ 37%] 604s testsuite/MDAnalysisTests/formats/test_libmdaxdr.py::test_write_xtc_array_like[array] PASSED [ 37%] 604s testsuite/MDAnalysisTests/formats/test_libmdaxdr.py::test_write_xtc_array_like[list] PASSED [ 37%] 604s testsuite/MDAnalysisTests/formats/test_libmdaxdr.py::test_write_prec PASSED [ 37%] 604s testsuite/MDAnalysisTests/formats/test_libmdaxdr.py::test_different_box_xtc PASSED [ 37%] 604s testsuite/MDAnalysisTests/formats/test_libmdaxdr.py::test_write_different_x_xtc PASSED [ 37%] 604s testsuite/MDAnalysisTests/formats/test_libmdaxdr.py::test_write_different_prec PASSED [ 37%] 604s testsuite/MDAnalysisTests/formats/test_libmdaxdr.py::test_written_step_trr PASSED [ 37%] 604s testsuite/MDAnalysisTests/formats/test_libmdaxdr.py::test_written_time_trr PASSED [ 37%] 604s testsuite/MDAnalysisTests/formats/test_libmdaxdr.py::test_written_box_trr PASSED [ 37%] 604s testsuite/MDAnalysisTests/formats/test_libmdaxdr.py::test_written_xyx_trr PASSED [ 37%] 604s testsuite/MDAnalysisTests/formats/test_libmdaxdr.py::test_written_velocities_trr PASSED [ 37%] 604s testsuite/MDAnalysisTests/formats/test_libmdaxdr.py::test_written_forces_trr PASSED [ 37%] 604s testsuite/MDAnalysisTests/formats/test_libmdaxdr.py::test_write_trr_dtype[int32] PASSED [ 37%] 604s testsuite/MDAnalysisTests/formats/test_libmdaxdr.py::test_write_trr_dtype[int64] PASSED [ 37%] 604s testsuite/MDAnalysisTests/formats/test_libmdaxdr.py::test_write_trr_dtype[float32] PASSED [ 37%] 604s testsuite/MDAnalysisTests/formats/test_libmdaxdr.py::test_write_trr_dtype[float64] PASSED [ 37%] 604s testsuite/MDAnalysisTests/formats/test_libmdaxdr.py::test_write_trr_dtype[int] PASSED [ 37%] 604s testsuite/MDAnalysisTests/formats/test_libmdaxdr.py::test_write_trr_dtype[float] PASSED [ 37%] 604s testsuite/MDAnalysisTests/formats/test_libmdaxdr.py::test_write_trr_array_like[array] PASSED [ 37%] 604s testsuite/MDAnalysisTests/formats/test_libmdaxdr.py::test_write_trr_array_like[list] PASSED [ 37%] 604s testsuite/MDAnalysisTests/formats/test_libmdaxdr.py::test_write_different_box_trr PASSED [ 37%] 604s testsuite/MDAnalysisTests/formats/test_libmdaxdr.py::test_write_different_natoms PASSED [ 37%] 604s testsuite/MDAnalysisTests/formats/test_libmdaxdr.py::test_write_different_x_trr PASSED [ 37%] 604s testsuite/MDAnalysisTests/formats/test_libmdaxdr.py::test_write_different_v PASSED [ 37%] 604s testsuite/MDAnalysisTests/formats/test_libmdaxdr.py::test_write_different_f PASSED [ 37%] 607s testsuite/MDAnalysisTests/import/test_import.py::TestMDAImport::test_os_dot_fork_not_called PASSED [ 37%] 607s testsuite/MDAnalysisTests/import/test_import.py::TestMDAImport::test_os_dot_fork_not_none PASSED [ 37%] 607s testsuite/MDAnalysisTests/lib/test_augment.py::test_augment[q0-res0-b0] PASSED [ 37%] 607s testsuite/MDAnalysisTests/lib/test_augment.py::test_augment[q0-res0-b1] PASSED [ 37%] 607s testsuite/MDAnalysisTests/lib/test_augment.py::test_augment[q1-res1-b0] PASSED [ 37%] 607s testsuite/MDAnalysisTests/lib/test_augment.py::test_augment[q1-res1-b1] PASSED [ 37%] 607s testsuite/MDAnalysisTests/lib/test_augment.py::test_augment[q2-res2-b0] PASSED [ 38%] 607s testsuite/MDAnalysisTests/lib/test_augment.py::test_augment[q2-res2-b1] PASSED [ 38%] 607s testsuite/MDAnalysisTests/lib/test_augment.py::test_augment[q3-res3-b0] PASSED [ 38%] 607s testsuite/MDAnalysisTests/lib/test_augment.py::test_augment[q3-res3-b1] PASSED [ 38%] 607s testsuite/MDAnalysisTests/lib/test_augment.py::test_augment[q4-res4-b0] PASSED [ 38%] 607s testsuite/MDAnalysisTests/lib/test_augment.py::test_augment[q4-res4-b1] PASSED [ 38%] 607s testsuite/MDAnalysisTests/lib/test_augment.py::test_augment[q5-res5-b0] PASSED [ 38%] 607s testsuite/MDAnalysisTests/lib/test_augment.py::test_augment[q5-res5-b1] PASSED [ 38%] 607s testsuite/MDAnalysisTests/lib/test_augment.py::test_augment[q6-res6-b0] PASSED [ 38%] 607s testsuite/MDAnalysisTests/lib/test_augment.py::test_augment[q6-res6-b1] PASSED [ 38%] 607s testsuite/MDAnalysisTests/lib/test_augment.py::test_augment[q7-res7-b0] PASSED [ 38%] 607s testsuite/MDAnalysisTests/lib/test_augment.py::test_augment[q7-res7-b1] PASSED [ 38%] 607s testsuite/MDAnalysisTests/lib/test_augment.py::test_augment[q8-res8-b0] PASSED [ 38%] 607s testsuite/MDAnalysisTests/lib/test_augment.py::test_augment[q8-res8-b1] PASSED [ 38%] 607s testsuite/MDAnalysisTests/lib/test_augment.py::test_undoaugment[qres0-b0] PASSED [ 38%] 607s testsuite/MDAnalysisTests/lib/test_augment.py::test_undoaugment[qres0-b1] PASSED [ 38%] 607s testsuite/MDAnalysisTests/lib/test_augment.py::test_undoaugment[qres1-b0] PASSED [ 38%] 607s testsuite/MDAnalysisTests/lib/test_augment.py::test_undoaugment[qres1-b1] PASSED [ 38%] 607s testsuite/MDAnalysisTests/lib/test_augment.py::test_undoaugment[qres2-b0] PASSED [ 38%] 607s testsuite/MDAnalysisTests/lib/test_augment.py::test_undoaugment[qres2-b1] PASSED [ 38%] 607s testsuite/MDAnalysisTests/lib/test_augment.py::test_undoaugment[qres3-b0] PASSED [ 38%] 607s testsuite/MDAnalysisTests/lib/test_augment.py::test_undoaugment[qres3-b1] PASSED [ 38%] 607s testsuite/MDAnalysisTests/lib/test_augment.py::test_undoaugment[qres4-b0] PASSED [ 38%] 607s testsuite/MDAnalysisTests/lib/test_augment.py::test_undoaugment[qres4-b1] PASSED [ 38%] 607s testsuite/MDAnalysisTests/lib/test_augment.py::test_undoaugment[qres5-b0] PASSED [ 38%] 607s testsuite/MDAnalysisTests/lib/test_augment.py::test_undoaugment[qres5-b1] PASSED [ 38%] 607s testsuite/MDAnalysisTests/lib/test_augment.py::test_undoaugment[qres6-b0] PASSED [ 38%] 607s testsuite/MDAnalysisTests/lib/test_augment.py::test_undoaugment[qres6-b1] PASSED [ 38%] 607s testsuite/MDAnalysisTests/lib/test_augment.py::test_undoaugment[qres7-b0] PASSED [ 38%] 607s testsuite/MDAnalysisTests/lib/test_augment.py::test_undoaugment[qres7-b1] PASSED [ 38%] 607s testsuite/MDAnalysisTests/lib/test_augment.py::test_undoaugment[qres8-b0] PASSED [ 38%] 607s testsuite/MDAnalysisTests/lib/test_augment.py::test_undoaugment[qres8-b1] PASSED [ 38%] 607s testsuite/MDAnalysisTests/lib/test_cutil.py::test_unique_int_1d[values0] PASSED [ 38%] 607s testsuite/MDAnalysisTests/lib/test_cutil.py::test_unique_int_1d[values1] PASSED [ 38%] 607s testsuite/MDAnalysisTests/lib/test_cutil.py::test_unique_int_1d[values2] PASSED [ 38%] 607s testsuite/MDAnalysisTests/lib/test_cutil.py::test_unique_int_1d[values3] PASSED [ 38%] 607s testsuite/MDAnalysisTests/lib/test_cutil.py::test_unique_int_1d[values4] PASSED [ 38%] 607s testsuite/MDAnalysisTests/lib/test_cutil.py::test_unique_int_1d[values5] PASSED [ 38%] 607s testsuite/MDAnalysisTests/lib/test_cutil.py::test_find_fragments[edges0-ref0] PASSED [ 38%] 607s testsuite/MDAnalysisTests/lib/test_cutil.py::test_find_fragments[edges1-ref1] PASSED [ 38%] 607s testsuite/MDAnalysisTests/lib/test_cutil.py::test_find_fragments[edges2-ref2] PASSED [ 38%] 607s testsuite/MDAnalysisTests/lib/test_cutil.py::test_find_fragments[edges3-ref3] PASSED [ 38%] 607s testsuite/MDAnalysisTests/lib/test_cutil.py::test_in2d PASSED [ 38%] 607s testsuite/MDAnalysisTests/lib/test_cutil.py::test_in2d_VE[arr10-arr20] PASSED [ 38%] 607s testsuite/MDAnalysisTests/lib/test_cutil.py::test_in2d_VE[arr11-arr21] PASSED [ 38%] 607s testsuite/MDAnalysisTests/lib/test_distances.py::TestCheckResultArray::test_check_result_array_pass PASSED [ 38%] 607s testsuite/MDAnalysisTests/lib/test_distances.py::TestCheckResultArray::test_check_result_array_wrong_shape PASSED [ 38%] 607s testsuite/MDAnalysisTests/lib/test_distances.py::TestCheckResultArray::test_check_result_array_wrong_dtype PASSED [ 38%] 607s testsuite/MDAnalysisTests/lib/test_distances.py::test_transform_StoR_pass[float32] PASSED [ 38%] 607s testsuite/MDAnalysisTests/lib/test_distances.py::test_transform_StoR_pass[float64] PASSED [ 38%] 607s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_noresults PASSED [ 38%] 607s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_checkbrute[None-bruteforce-box0-1-query_1] PASSED [ 38%] 607s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_checkbrute[None-bruteforce-box0-1-query_2] PASSED [ 38%] 607s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_checkbrute[None-bruteforce-box0-1-query_1_atomgroup] PASSED [ 38%] 607s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_checkbrute[None-bruteforce-box0-1-query_2_atomgroup] PASSED [ 38%] 607s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_checkbrute[None-bruteforce-box0-100-query_1] PASSED [ 38%] 607s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_checkbrute[None-bruteforce-box0-100-query_2] PASSED [ 38%] 607s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_checkbrute[None-bruteforce-box0-100-query_1_atomgroup] PASSED [ 38%] 607s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_checkbrute[None-bruteforce-box0-100-query_2_atomgroup] PASSED [ 38%] 607s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_checkbrute[None-bruteforce-box1-1-query_1] PASSED [ 38%] 607s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_checkbrute[None-bruteforce-box1-1-query_2] PASSED [ 38%] 607s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_checkbrute[None-bruteforce-box1-1-query_1_atomgroup] PASSED [ 38%] 607s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_checkbrute[None-bruteforce-box1-1-query_2_atomgroup] PASSED [ 38%] 607s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_checkbrute[None-bruteforce-box1-100-query_1] PASSED [ 38%] 607s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_checkbrute[None-bruteforce-box1-100-query_2] PASSED [ 38%] 607s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_checkbrute[None-bruteforce-box1-100-query_1_atomgroup] PASSED [ 38%] 607s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_checkbrute[None-bruteforce-box1-100-query_2_atomgroup] PASSED [ 38%] 607s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_checkbrute[None-bruteforce-None-1-query_1] PASSED [ 38%] 607s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_checkbrute[None-bruteforce-None-1-query_2] PASSED [ 38%] 607s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_checkbrute[None-bruteforce-None-1-query_1_atomgroup] PASSED [ 38%] 607s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_checkbrute[None-bruteforce-None-1-query_2_atomgroup] PASSED [ 38%] 607s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_checkbrute[None-bruteforce-None-100-query_1] PASSED [ 38%] 607s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_checkbrute[None-bruteforce-None-100-query_2] PASSED [ 38%] 607s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_checkbrute[None-bruteforce-None-100-query_1_atomgroup] PASSED [ 38%] 607s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_checkbrute[None-bruteforce-None-100-query_2_atomgroup] PASSED [ 38%] 607s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_checkbrute[None-pkdtree-box0-1-query_1] PASSED [ 38%] 607s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_checkbrute[None-pkdtree-box0-1-query_2] PASSED [ 38%] 607s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_checkbrute[None-pkdtree-box0-1-query_1_atomgroup] PASSED [ 38%] 607s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_checkbrute[None-pkdtree-box0-1-query_2_atomgroup] PASSED [ 38%] 607s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_checkbrute[None-pkdtree-box0-100-query_1] PASSED [ 38%] 607s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_checkbrute[None-pkdtree-box0-100-query_2] PASSED [ 38%] 607s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_checkbrute[None-pkdtree-box0-100-query_1_atomgroup] PASSED [ 38%] 607s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_checkbrute[None-pkdtree-box0-100-query_2_atomgroup] PASSED [ 38%] 607s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_checkbrute[None-pkdtree-box1-1-query_1] PASSED [ 38%] 607s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_checkbrute[None-pkdtree-box1-1-query_2] PASSED [ 38%] 607s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_checkbrute[None-pkdtree-box1-1-query_1_atomgroup] PASSED [ 38%] 607s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_checkbrute[None-pkdtree-box1-1-query_2_atomgroup] PASSED [ 38%] 607s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_checkbrute[None-pkdtree-box1-100-query_1] PASSED [ 38%] 607s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_checkbrute[None-pkdtree-box1-100-query_2] PASSED [ 38%] 607s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_checkbrute[None-pkdtree-box1-100-query_1_atomgroup] PASSED [ 38%] 607s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_checkbrute[None-pkdtree-box1-100-query_2_atomgroup] PASSED [ 38%] 607s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_checkbrute[None-pkdtree-None-1-query_1] PASSED [ 38%] 607s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_checkbrute[None-pkdtree-None-1-query_2] PASSED [ 38%] 607s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_checkbrute[None-pkdtree-None-1-query_1_atomgroup] PASSED [ 38%] 607s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_checkbrute[None-pkdtree-None-1-query_2_atomgroup] PASSED [ 38%] 607s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_checkbrute[None-pkdtree-None-100-query_1] PASSED [ 38%] 607s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_checkbrute[None-pkdtree-None-100-query_2] PASSED [ 38%] 607s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_checkbrute[None-pkdtree-None-100-query_1_atomgroup] PASSED [ 38%] 607s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_checkbrute[None-pkdtree-None-100-query_2_atomgroup] PASSED [ 38%] 607s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_checkbrute[None-nsgrid-box0-1-query_1] PASSED [ 38%] 607s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_checkbrute[None-nsgrid-box0-1-query_2] PASSED [ 38%] 607s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_checkbrute[None-nsgrid-box0-1-query_1_atomgroup] PASSED [ 38%] 607s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_checkbrute[None-nsgrid-box0-1-query_2_atomgroup] PASSED [ 38%] 607s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_checkbrute[None-nsgrid-box0-100-query_1] PASSED [ 38%] 607s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_checkbrute[None-nsgrid-box0-100-query_2] PASSED [ 38%] 607s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_checkbrute[None-nsgrid-box0-100-query_1_atomgroup] PASSED [ 38%] 607s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_checkbrute[None-nsgrid-box0-100-query_2_atomgroup] PASSED [ 38%] 607s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_checkbrute[None-nsgrid-box1-1-query_1] PASSED [ 38%] 607s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_checkbrute[None-nsgrid-box1-1-query_2] PASSED [ 38%] 607s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_checkbrute[None-nsgrid-box1-1-query_1_atomgroup] PASSED [ 38%] 607s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_checkbrute[None-nsgrid-box1-1-query_2_atomgroup] PASSED [ 38%] 607s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_checkbrute[None-nsgrid-box1-100-query_1] PASSED [ 38%] 607s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_checkbrute[None-nsgrid-box1-100-query_2] PASSED [ 38%] 607s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_checkbrute[None-nsgrid-box1-100-query_1_atomgroup] PASSED [ 38%] 607s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_checkbrute[None-nsgrid-box1-100-query_2_atomgroup] PASSED [ 38%] 607s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_checkbrute[None-nsgrid-None-1-query_1] PASSED [ 38%] 607s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_checkbrute[None-nsgrid-None-1-query_2] PASSED [ 38%] 607s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_checkbrute[None-nsgrid-None-1-query_1_atomgroup] PASSED [ 38%] 607s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_checkbrute[None-nsgrid-None-1-query_2_atomgroup] PASSED [ 38%] 607s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_checkbrute[None-nsgrid-None-100-query_1] PASSED [ 38%] 607s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_checkbrute[None-nsgrid-None-100-query_2] PASSED [ 38%] 607s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_checkbrute[None-nsgrid-None-100-query_1_atomgroup] PASSED [ 38%] 607s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_checkbrute[None-nsgrid-None-100-query_2_atomgroup] PASSED [ 38%] 607s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_checkbrute[0.1-bruteforce-box0-1-query_1] PASSED [ 38%] 607s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_checkbrute[0.1-bruteforce-box0-1-query_2] PASSED [ 38%] 607s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_checkbrute[0.1-bruteforce-box0-1-query_1_atomgroup] PASSED [ 38%] 607s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_checkbrute[0.1-bruteforce-box0-1-query_2_atomgroup] PASSED [ 38%] 607s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_checkbrute[0.1-bruteforce-box0-100-query_1] PASSED [ 38%] 607s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_checkbrute[0.1-bruteforce-box0-100-query_2] PASSED [ 38%] 607s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_checkbrute[0.1-bruteforce-box0-100-query_1_atomgroup] PASSED [ 38%] 607s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_checkbrute[0.1-bruteforce-box0-100-query_2_atomgroup] PASSED [ 38%] 607s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_checkbrute[0.1-bruteforce-box1-1-query_1] PASSED [ 38%] 607s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_checkbrute[0.1-bruteforce-box1-1-query_2] PASSED [ 38%] 607s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_checkbrute[0.1-bruteforce-box1-1-query_1_atomgroup] PASSED [ 38%] 607s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_checkbrute[0.1-bruteforce-box1-1-query_2_atomgroup] PASSED [ 38%] 607s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_checkbrute[0.1-bruteforce-box1-100-query_1] PASSED [ 38%] 607s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_checkbrute[0.1-bruteforce-box1-100-query_2] PASSED [ 38%] 607s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_checkbrute[0.1-bruteforce-box1-100-query_1_atomgroup] PASSED [ 38%] 607s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_checkbrute[0.1-bruteforce-box1-100-query_2_atomgroup] PASSED [ 38%] 607s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_checkbrute[0.1-bruteforce-None-1-query_1] PASSED [ 38%] 607s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_checkbrute[0.1-bruteforce-None-1-query_2] PASSED [ 38%] 607s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_checkbrute[0.1-bruteforce-None-1-query_1_atomgroup] PASSED [ 38%] 607s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_checkbrute[0.1-bruteforce-None-1-query_2_atomgroup] PASSED [ 38%] 607s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_checkbrute[0.1-bruteforce-None-100-query_1] PASSED [ 38%] 607s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_checkbrute[0.1-bruteforce-None-100-query_2] PASSED [ 38%] 607s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_checkbrute[0.1-bruteforce-None-100-query_1_atomgroup] PASSED [ 38%] 607s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_checkbrute[0.1-bruteforce-None-100-query_2_atomgroup] PASSED [ 38%] 607s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_checkbrute[0.1-pkdtree-box0-1-query_1] PASSED [ 38%] 607s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_checkbrute[0.1-pkdtree-box0-1-query_2] PASSED [ 38%] 607s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_checkbrute[0.1-pkdtree-box0-1-query_1_atomgroup] PASSED [ 38%] 607s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_checkbrute[0.1-pkdtree-box0-1-query_2_atomgroup] PASSED [ 38%] 607s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_checkbrute[0.1-pkdtree-box0-100-query_1] PASSED [ 38%] 607s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_checkbrute[0.1-pkdtree-box0-100-query_2] PASSED [ 38%] 607s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_checkbrute[0.1-pkdtree-box0-100-query_1_atomgroup] PASSED [ 38%] 607s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_checkbrute[0.1-pkdtree-box0-100-query_2_atomgroup] PASSED [ 38%] 607s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_checkbrute[0.1-pkdtree-box1-1-query_1] PASSED [ 38%] 607s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_checkbrute[0.1-pkdtree-box1-1-query_2] PASSED [ 38%] 607s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_checkbrute[0.1-pkdtree-box1-1-query_1_atomgroup] PASSED [ 38%] 607s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_checkbrute[0.1-pkdtree-box1-1-query_2_atomgroup] PASSED [ 38%] 607s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_checkbrute[0.1-pkdtree-box1-100-query_1] PASSED [ 38%] 607s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_checkbrute[0.1-pkdtree-box1-100-query_2] PASSED [ 38%] 607s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_checkbrute[0.1-pkdtree-box1-100-query_1_atomgroup] PASSED [ 38%] 607s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_checkbrute[0.1-pkdtree-box1-100-query_2_atomgroup] PASSED [ 38%] 607s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_checkbrute[0.1-pkdtree-None-1-query_1] PASSED [ 38%] 607s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_checkbrute[0.1-pkdtree-None-1-query_2] PASSED [ 38%] 607s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_checkbrute[0.1-pkdtree-None-1-query_1_atomgroup] PASSED [ 38%] 607s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_checkbrute[0.1-pkdtree-None-1-query_2_atomgroup] PASSED [ 38%] 607s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_checkbrute[0.1-pkdtree-None-100-query_1] PASSED [ 38%] 607s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_checkbrute[0.1-pkdtree-None-100-query_2] PASSED [ 38%] 607s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_checkbrute[0.1-pkdtree-None-100-query_1_atomgroup] PASSED [ 38%] 607s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_checkbrute[0.1-pkdtree-None-100-query_2_atomgroup] PASSED [ 38%] 607s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_checkbrute[0.1-nsgrid-box0-1-query_1] PASSED [ 38%] 607s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_checkbrute[0.1-nsgrid-box0-1-query_2] PASSED [ 38%] 607s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_checkbrute[0.1-nsgrid-box0-1-query_1_atomgroup] PASSED [ 38%] 607s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_checkbrute[0.1-nsgrid-box0-1-query_2_atomgroup] PASSED [ 38%] 607s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_checkbrute[0.1-nsgrid-box0-100-query_1] PASSED [ 38%] 607s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_checkbrute[0.1-nsgrid-box0-100-query_2] PASSED [ 38%] 607s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_checkbrute[0.1-nsgrid-box0-100-query_1_atomgroup] PASSED [ 38%] 607s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_checkbrute[0.1-nsgrid-box0-100-query_2_atomgroup] PASSED [ 38%] 607s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_checkbrute[0.1-nsgrid-box1-1-query_1] PASSED [ 38%] 607s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_checkbrute[0.1-nsgrid-box1-1-query_2] PASSED [ 38%] 607s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_checkbrute[0.1-nsgrid-box1-1-query_1_atomgroup] PASSED [ 38%] 607s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_checkbrute[0.1-nsgrid-box1-1-query_2_atomgroup] PASSED [ 38%] 607s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_checkbrute[0.1-nsgrid-box1-100-query_1] PASSED [ 38%] 607s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_checkbrute[0.1-nsgrid-box1-100-query_2] PASSED [ 39%] 607s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_checkbrute[0.1-nsgrid-box1-100-query_1_atomgroup] PASSED [ 39%] 607s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_checkbrute[0.1-nsgrid-box1-100-query_2_atomgroup] PASSED [ 39%] 607s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_checkbrute[0.1-nsgrid-None-1-query_1] PASSED [ 39%] 607s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_checkbrute[0.1-nsgrid-None-1-query_2] PASSED [ 39%] 607s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_checkbrute[0.1-nsgrid-None-1-query_1_atomgroup] PASSED [ 39%] 607s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_checkbrute[0.1-nsgrid-None-1-query_2_atomgroup] PASSED [ 39%] 607s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_checkbrute[0.1-nsgrid-None-100-query_1] PASSED [ 39%] 607s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_checkbrute[0.1-nsgrid-None-100-query_2] PASSED [ 39%] 607s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_checkbrute[0.1-nsgrid-None-100-query_1_atomgroup] PASSED [ 39%] 607s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_checkbrute[0.1-nsgrid-None-100-query_2_atomgroup] PASSED [ 39%] 607s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_return[None-bruteforce-box0-1-query_1] PASSED [ 39%] 607s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_return[None-bruteforce-box0-1-query_2] PASSED [ 39%] 607s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_return[None-bruteforce-box0-1-query_1_atomgroup] PASSED [ 39%] 607s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_return[None-bruteforce-box0-1-query_2_atomgroup] PASSED [ 39%] 607s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_return[None-bruteforce-box0-100-query_1] PASSED [ 39%] 607s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_return[None-bruteforce-box0-100-query_2] PASSED [ 39%] 607s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_return[None-bruteforce-box0-100-query_1_atomgroup] PASSED [ 39%] 607s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_return[None-bruteforce-box0-100-query_2_atomgroup] PASSED [ 39%] 607s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_return[None-bruteforce-box1-1-query_1] PASSED [ 39%] 607s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_return[None-bruteforce-box1-1-query_2] PASSED [ 39%] 607s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_return[None-bruteforce-box1-1-query_1_atomgroup] PASSED [ 39%] 607s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_return[None-bruteforce-box1-1-query_2_atomgroup] PASSED [ 39%] 607s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_return[None-bruteforce-box1-100-query_1] PASSED [ 39%] 607s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_return[None-bruteforce-box1-100-query_2] PASSED [ 39%] 607s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_return[None-bruteforce-box1-100-query_1_atomgroup] PASSED [ 39%] 607s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_return[None-bruteforce-box1-100-query_2_atomgroup] PASSED [ 39%] 607s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_return[None-bruteforce-None-1-query_1] PASSED [ 39%] 607s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_return[None-bruteforce-None-1-query_2] PASSED [ 39%] 607s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_return[None-bruteforce-None-1-query_1_atomgroup] PASSED [ 39%] 607s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_return[None-bruteforce-None-1-query_2_atomgroup] PASSED [ 39%] 607s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_return[None-bruteforce-None-100-query_1] PASSED [ 39%] 607s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_return[None-bruteforce-None-100-query_2] PASSED [ 39%] 607s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_return[None-bruteforce-None-100-query_1_atomgroup] PASSED [ 39%] 607s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_return[None-bruteforce-None-100-query_2_atomgroup] PASSED [ 39%] 607s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_return[None-pkdtree-box0-1-query_1] PASSED [ 39%] 607s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_return[None-pkdtree-box0-1-query_2] PASSED [ 39%] 607s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_return[None-pkdtree-box0-1-query_1_atomgroup] PASSED [ 39%] 607s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_return[None-pkdtree-box0-1-query_2_atomgroup] PASSED [ 39%] 607s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_return[None-pkdtree-box0-100-query_1] PASSED [ 39%] 607s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_return[None-pkdtree-box0-100-query_2] PASSED [ 39%] 607s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_return[None-pkdtree-box0-100-query_1_atomgroup] PASSED [ 39%] 607s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_return[None-pkdtree-box0-100-query_2_atomgroup] PASSED [ 39%] 607s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_return[None-pkdtree-box1-1-query_1] PASSED [ 39%] 607s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_return[None-pkdtree-box1-1-query_2] PASSED [ 39%] 607s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_return[None-pkdtree-box1-1-query_1_atomgroup] PASSED [ 39%] 607s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_return[None-pkdtree-box1-1-query_2_atomgroup] PASSED [ 39%] 607s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_return[None-pkdtree-box1-100-query_1] PASSED [ 39%] 607s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_return[None-pkdtree-box1-100-query_2] PASSED [ 39%] 608s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_return[None-pkdtree-box1-100-query_1_atomgroup] PASSED [ 39%] 608s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_return[None-pkdtree-box1-100-query_2_atomgroup] PASSED [ 39%] 608s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_return[None-pkdtree-None-1-query_1] PASSED [ 39%] 608s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_return[None-pkdtree-None-1-query_2] PASSED [ 39%] 608s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_return[None-pkdtree-None-1-query_1_atomgroup] PASSED [ 39%] 608s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_return[None-pkdtree-None-1-query_2_atomgroup] PASSED [ 39%] 608s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_return[None-pkdtree-None-100-query_1] PASSED [ 39%] 608s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_return[None-pkdtree-None-100-query_2] PASSED [ 39%] 608s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_return[None-pkdtree-None-100-query_1_atomgroup] PASSED [ 39%] 608s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_return[None-pkdtree-None-100-query_2_atomgroup] PASSED [ 39%] 608s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_return[None-nsgrid-box0-1-query_1] PASSED [ 39%] 608s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_return[None-nsgrid-box0-1-query_2] PASSED [ 39%] 608s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_return[None-nsgrid-box0-1-query_1_atomgroup] PASSED [ 39%] 608s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_return[None-nsgrid-box0-1-query_2_atomgroup] PASSED [ 39%] 608s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_return[None-nsgrid-box0-100-query_1] PASSED [ 39%] 608s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_return[None-nsgrid-box0-100-query_2] PASSED [ 39%] 608s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_return[None-nsgrid-box0-100-query_1_atomgroup] PASSED [ 39%] 608s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_return[None-nsgrid-box0-100-query_2_atomgroup] PASSED [ 39%] 608s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_return[None-nsgrid-box1-1-query_1] PASSED [ 39%] 608s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_return[None-nsgrid-box1-1-query_2] PASSED [ 39%] 608s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_return[None-nsgrid-box1-1-query_1_atomgroup] PASSED [ 39%] 608s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_return[None-nsgrid-box1-1-query_2_atomgroup] PASSED [ 39%] 608s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_return[None-nsgrid-box1-100-query_1] PASSED [ 39%] 608s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_return[None-nsgrid-box1-100-query_2] PASSED [ 39%] 608s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_return[None-nsgrid-box1-100-query_1_atomgroup] PASSED [ 39%] 608s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_return[None-nsgrid-box1-100-query_2_atomgroup] PASSED [ 39%] 608s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_return[None-nsgrid-None-1-query_1] PASSED [ 39%] 608s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_return[None-nsgrid-None-1-query_2] PASSED [ 39%] 608s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_return[None-nsgrid-None-1-query_1_atomgroup] PASSED [ 39%] 608s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_return[None-nsgrid-None-1-query_2_atomgroup] PASSED [ 39%] 608s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_return[None-nsgrid-None-100-query_1] PASSED [ 39%] 608s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_return[None-nsgrid-None-100-query_2] PASSED [ 39%] 608s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_return[None-nsgrid-None-100-query_1_atomgroup] PASSED [ 39%] 608s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_return[None-nsgrid-None-100-query_2_atomgroup] PASSED [ 39%] 608s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_return[0.1-bruteforce-box0-1-query_1] PASSED [ 39%] 608s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_return[0.1-bruteforce-box0-1-query_2] PASSED [ 39%] 608s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_return[0.1-bruteforce-box0-1-query_1_atomgroup] PASSED [ 39%] 608s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_return[0.1-bruteforce-box0-1-query_2_atomgroup] PASSED [ 39%] 608s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_return[0.1-bruteforce-box0-100-query_1] PASSED [ 39%] 608s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_return[0.1-bruteforce-box0-100-query_2] PASSED [ 39%] 608s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_return[0.1-bruteforce-box0-100-query_1_atomgroup] PASSED [ 39%] 608s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_return[0.1-bruteforce-box0-100-query_2_atomgroup] PASSED [ 39%] 608s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_return[0.1-bruteforce-box1-1-query_1] PASSED [ 39%] 608s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_return[0.1-bruteforce-box1-1-query_2] PASSED [ 39%] 608s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_return[0.1-bruteforce-box1-1-query_1_atomgroup] PASSED [ 39%] 608s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_return[0.1-bruteforce-box1-1-query_2_atomgroup] PASSED [ 39%] 608s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_return[0.1-bruteforce-box1-100-query_1] PASSED [ 39%] 608s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_return[0.1-bruteforce-box1-100-query_2] PASSED [ 39%] 608s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_return[0.1-bruteforce-box1-100-query_1_atomgroup] PASSED [ 39%] 608s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_return[0.1-bruteforce-box1-100-query_2_atomgroup] PASSED [ 39%] 608s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_return[0.1-bruteforce-None-1-query_1] PASSED [ 39%] 608s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_return[0.1-bruteforce-None-1-query_2] PASSED [ 39%] 608s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_return[0.1-bruteforce-None-1-query_1_atomgroup] PASSED [ 39%] 608s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_return[0.1-bruteforce-None-1-query_2_atomgroup] PASSED [ 39%] 608s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_return[0.1-bruteforce-None-100-query_1] PASSED [ 39%] 608s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_return[0.1-bruteforce-None-100-query_2] PASSED [ 39%] 608s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_return[0.1-bruteforce-None-100-query_1_atomgroup] PASSED [ 39%] 608s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_return[0.1-bruteforce-None-100-query_2_atomgroup] PASSED [ 39%] 608s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_return[0.1-pkdtree-box0-1-query_1] PASSED [ 39%] 608s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_return[0.1-pkdtree-box0-1-query_2] PASSED [ 39%] 608s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_return[0.1-pkdtree-box0-1-query_1_atomgroup] PASSED [ 39%] 608s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_return[0.1-pkdtree-box0-1-query_2_atomgroup] PASSED [ 39%] 608s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_return[0.1-pkdtree-box0-100-query_1] PASSED [ 39%] 608s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_return[0.1-pkdtree-box0-100-query_2] PASSED [ 39%] 608s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_return[0.1-pkdtree-box0-100-query_1_atomgroup] PASSED [ 39%] 608s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_return[0.1-pkdtree-box0-100-query_2_atomgroup] PASSED [ 39%] 608s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_return[0.1-pkdtree-box1-1-query_1] PASSED [ 39%] 608s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_return[0.1-pkdtree-box1-1-query_2] PASSED [ 39%] 608s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_return[0.1-pkdtree-box1-1-query_1_atomgroup] PASSED [ 39%] 608s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_return[0.1-pkdtree-box1-1-query_2_atomgroup] PASSED [ 39%] 608s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_return[0.1-pkdtree-box1-100-query_1] PASSED [ 39%] 608s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_return[0.1-pkdtree-box1-100-query_2] PASSED [ 39%] 608s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_return[0.1-pkdtree-box1-100-query_1_atomgroup] PASSED [ 39%] 608s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_return[0.1-pkdtree-box1-100-query_2_atomgroup] PASSED [ 39%] 608s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_return[0.1-pkdtree-None-1-query_1] PASSED [ 39%] 608s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_return[0.1-pkdtree-None-1-query_2] PASSED [ 39%] 608s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_return[0.1-pkdtree-None-1-query_1_atomgroup] PASSED [ 39%] 608s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_return[0.1-pkdtree-None-1-query_2_atomgroup] PASSED [ 39%] 608s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_return[0.1-pkdtree-None-100-query_1] PASSED [ 39%] 608s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_return[0.1-pkdtree-None-100-query_2] PASSED [ 39%] 608s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_return[0.1-pkdtree-None-100-query_1_atomgroup] PASSED [ 39%] 608s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_return[0.1-pkdtree-None-100-query_2_atomgroup] PASSED [ 39%] 608s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_return[0.1-nsgrid-box0-1-query_1] PASSED [ 39%] 608s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_return[0.1-nsgrid-box0-1-query_2] PASSED [ 39%] 608s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_return[0.1-nsgrid-box0-1-query_1_atomgroup] PASSED [ 39%] 608s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_return[0.1-nsgrid-box0-1-query_2_atomgroup] PASSED [ 39%] 608s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_return[0.1-nsgrid-box0-100-query_1] PASSED [ 39%] 608s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_return[0.1-nsgrid-box0-100-query_2] PASSED [ 39%] 608s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_return[0.1-nsgrid-box0-100-query_1_atomgroup] PASSED [ 39%] 608s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_return[0.1-nsgrid-box0-100-query_2_atomgroup] PASSED [ 39%] 608s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_return[0.1-nsgrid-box1-1-query_1] PASSED [ 39%] 608s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_return[0.1-nsgrid-box1-1-query_2] PASSED [ 39%] 608s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_return[0.1-nsgrid-box1-1-query_1_atomgroup] PASSED [ 39%] 608s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_return[0.1-nsgrid-box1-1-query_2_atomgroup] PASSED [ 39%] 608s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_return[0.1-nsgrid-box1-100-query_1] PASSED [ 39%] 608s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_return[0.1-nsgrid-box1-100-query_2] PASSED [ 39%] 608s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_return[0.1-nsgrid-box1-100-query_1_atomgroup] PASSED [ 39%] 608s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_return[0.1-nsgrid-box1-100-query_2_atomgroup] PASSED [ 39%] 608s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_return[0.1-nsgrid-None-1-query_1] PASSED [ 39%] 608s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_return[0.1-nsgrid-None-1-query_2] PASSED [ 39%] 608s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_return[0.1-nsgrid-None-1-query_1_atomgroup] PASSED [ 39%] 608s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_return[0.1-nsgrid-None-1-query_2_atomgroup] PASSED [ 39%] 608s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_return[0.1-nsgrid-None-100-query_1] PASSED [ 39%] 608s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_return[0.1-nsgrid-None-100-query_2] PASSED [ 39%] 608s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_return[0.1-nsgrid-None-100-query_1_atomgroup] PASSED [ 39%] 608s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_return[0.1-nsgrid-None-100-query_2_atomgroup] PASSED [ 39%] 608s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_self_capped_distance[False-False-None-bruteforce-box0-1] PASSED [ 39%] 608s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_self_capped_distance[False-False-None-bruteforce-box0-100] PASSED [ 39%] 608s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_self_capped_distance[False-False-None-bruteforce-box1-1] PASSED [ 39%] 608s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_self_capped_distance[False-False-None-bruteforce-box1-100] PASSED [ 39%] 608s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_self_capped_distance[False-False-None-bruteforce-None-1] PASSED [ 39%] 608s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_self_capped_distance[False-False-None-bruteforce-None-100] PASSED [ 39%] 608s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_self_capped_distance[False-False-None-pkdtree-box0-1] PASSED [ 39%] 608s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_self_capped_distance[False-False-None-pkdtree-box0-100] PASSED [ 39%] 608s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_self_capped_distance[False-False-None-pkdtree-box1-1] PASSED [ 39%] 608s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_self_capped_distance[False-False-None-pkdtree-box1-100] PASSED [ 39%] 608s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_self_capped_distance[False-False-None-pkdtree-None-1] PASSED [ 39%] 608s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_self_capped_distance[False-False-None-pkdtree-None-100] PASSED [ 39%] 608s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_self_capped_distance[False-False-None-nsgrid-box0-1] PASSED [ 39%] 608s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_self_capped_distance[False-False-None-nsgrid-box0-100] PASSED [ 39%] 608s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_self_capped_distance[False-False-None-nsgrid-box1-1] PASSED [ 39%] 608s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_self_capped_distance[False-False-None-nsgrid-box1-100] PASSED [ 39%] 608s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_self_capped_distance[False-False-None-nsgrid-None-1] PASSED [ 39%] 608s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_self_capped_distance[False-False-None-nsgrid-None-100] PASSED [ 39%] 608s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_self_capped_distance[False-False-0.1-bruteforce-box0-1] PASSED [ 39%] 608s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_self_capped_distance[False-False-0.1-bruteforce-box0-100] PASSED [ 39%] 608s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_self_capped_distance[False-False-0.1-bruteforce-box1-1] PASSED [ 39%] 608s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_self_capped_distance[False-False-0.1-bruteforce-box1-100] PASSED [ 39%] 608s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_self_capped_distance[False-False-0.1-bruteforce-None-1] PASSED [ 39%] 608s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_self_capped_distance[False-False-0.1-bruteforce-None-100] PASSED [ 39%] 608s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_self_capped_distance[False-False-0.1-pkdtree-box0-1] PASSED [ 39%] 608s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_self_capped_distance[False-False-0.1-pkdtree-box0-100] PASSED [ 39%] 608s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_self_capped_distance[False-False-0.1-pkdtree-box1-1] PASSED [ 39%] 608s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_self_capped_distance[False-False-0.1-pkdtree-box1-100] PASSED [ 39%] 608s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_self_capped_distance[False-False-0.1-pkdtree-None-1] PASSED [ 39%] 608s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_self_capped_distance[False-False-0.1-pkdtree-None-100] PASSED [ 40%] 608s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_self_capped_distance[False-False-0.1-nsgrid-box0-1] PASSED [ 40%] 608s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_self_capped_distance[False-False-0.1-nsgrid-box0-100] PASSED [ 40%] 608s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_self_capped_distance[False-False-0.1-nsgrid-box1-1] PASSED [ 40%] 608s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_self_capped_distance[False-False-0.1-nsgrid-box1-100] PASSED [ 40%] 608s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_self_capped_distance[False-False-0.1-nsgrid-None-1] PASSED [ 40%] 608s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_self_capped_distance[False-False-0.1-nsgrid-None-100] PASSED [ 40%] 608s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_self_capped_distance[False-True-None-bruteforce-box0-1] PASSED [ 40%] 608s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_self_capped_distance[False-True-None-bruteforce-box0-100] PASSED [ 40%] 608s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_self_capped_distance[False-True-None-bruteforce-box1-1] PASSED [ 40%] 608s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_self_capped_distance[False-True-None-bruteforce-box1-100] PASSED [ 40%] 608s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_self_capped_distance[False-True-None-bruteforce-None-1] PASSED [ 40%] 608s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_self_capped_distance[False-True-None-bruteforce-None-100] PASSED [ 40%] 608s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_self_capped_distance[False-True-None-pkdtree-box0-1] PASSED [ 40%] 608s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_self_capped_distance[False-True-None-pkdtree-box0-100] PASSED [ 40%] 608s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_self_capped_distance[False-True-None-pkdtree-box1-1] PASSED [ 40%] 608s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_self_capped_distance[False-True-None-pkdtree-box1-100] PASSED [ 40%] 608s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_self_capped_distance[False-True-None-pkdtree-None-1] PASSED [ 40%] 608s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_self_capped_distance[False-True-None-pkdtree-None-100] PASSED [ 40%] 608s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_self_capped_distance[False-True-None-nsgrid-box0-1] PASSED [ 40%] 608s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_self_capped_distance[False-True-None-nsgrid-box0-100] PASSED [ 40%] 608s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_self_capped_distance[False-True-None-nsgrid-box1-1] PASSED [ 40%] 608s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_self_capped_distance[False-True-None-nsgrid-box1-100] PASSED [ 40%] 608s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_self_capped_distance[False-True-None-nsgrid-None-1] PASSED [ 40%] 608s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_self_capped_distance[False-True-None-nsgrid-None-100] PASSED [ 40%] 608s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_self_capped_distance[False-True-0.1-bruteforce-box0-1] PASSED [ 40%] 608s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_self_capped_distance[False-True-0.1-bruteforce-box0-100] PASSED [ 40%] 608s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_self_capped_distance[False-True-0.1-bruteforce-box1-1] PASSED [ 40%] 608s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_self_capped_distance[False-True-0.1-bruteforce-box1-100] PASSED [ 40%] 608s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_self_capped_distance[False-True-0.1-bruteforce-None-1] PASSED [ 40%] 608s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_self_capped_distance[False-True-0.1-bruteforce-None-100] PASSED [ 40%] 608s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_self_capped_distance[False-True-0.1-pkdtree-box0-1] PASSED [ 40%] 608s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_self_capped_distance[False-True-0.1-pkdtree-box0-100] PASSED [ 40%] 608s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_self_capped_distance[False-True-0.1-pkdtree-box1-1] PASSED [ 40%] 608s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_self_capped_distance[False-True-0.1-pkdtree-box1-100] PASSED [ 40%] 608s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_self_capped_distance[False-True-0.1-pkdtree-None-1] PASSED [ 40%] 608s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_self_capped_distance[False-True-0.1-pkdtree-None-100] PASSED [ 40%] 608s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_self_capped_distance[False-True-0.1-nsgrid-box0-1] PASSED [ 40%] 608s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_self_capped_distance[False-True-0.1-nsgrid-box0-100] PASSED [ 40%] 608s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_self_capped_distance[False-True-0.1-nsgrid-box1-1] PASSED [ 40%] 608s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_self_capped_distance[False-True-0.1-nsgrid-box1-100] PASSED [ 40%] 608s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_self_capped_distance[False-True-0.1-nsgrid-None-1] PASSED [ 40%] 608s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_self_capped_distance[False-True-0.1-nsgrid-None-100] PASSED [ 40%] 608s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_self_capped_distance[True-False-None-bruteforce-box0-1] PASSED [ 40%] 608s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_self_capped_distance[True-False-None-bruteforce-box0-100] PASSED [ 40%] 608s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_self_capped_distance[True-False-None-bruteforce-box1-1] PASSED [ 40%] 608s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_self_capped_distance[True-False-None-bruteforce-box1-100] PASSED [ 40%] 608s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_self_capped_distance[True-False-None-bruteforce-None-1] PASSED [ 40%] 608s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_self_capped_distance[True-False-None-bruteforce-None-100] PASSED [ 40%] 608s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_self_capped_distance[True-False-None-pkdtree-box0-1] PASSED [ 40%] 608s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_self_capped_distance[True-False-None-pkdtree-box0-100] PASSED [ 40%] 608s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_self_capped_distance[True-False-None-pkdtree-box1-1] PASSED [ 40%] 608s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_self_capped_distance[True-False-None-pkdtree-box1-100] PASSED [ 40%] 608s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_self_capped_distance[True-False-None-pkdtree-None-1] PASSED [ 40%] 608s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_self_capped_distance[True-False-None-pkdtree-None-100] PASSED [ 40%] 608s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_self_capped_distance[True-False-None-nsgrid-box0-1] PASSED [ 40%] 608s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_self_capped_distance[True-False-None-nsgrid-box0-100] PASSED [ 40%] 608s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_self_capped_distance[True-False-None-nsgrid-box1-1] PASSED [ 40%] 608s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_self_capped_distance[True-False-None-nsgrid-box1-100] PASSED [ 40%] 608s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_self_capped_distance[True-False-None-nsgrid-None-1] PASSED [ 40%] 608s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_self_capped_distance[True-False-None-nsgrid-None-100] PASSED [ 40%] 608s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_self_capped_distance[True-False-0.1-bruteforce-box0-1] PASSED [ 40%] 608s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_self_capped_distance[True-False-0.1-bruteforce-box0-100] PASSED [ 40%] 608s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_self_capped_distance[True-False-0.1-bruteforce-box1-1] PASSED [ 40%] 608s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_self_capped_distance[True-False-0.1-bruteforce-box1-100] PASSED [ 40%] 608s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_self_capped_distance[True-False-0.1-bruteforce-None-1] PASSED [ 40%] 608s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_self_capped_distance[True-False-0.1-bruteforce-None-100] PASSED [ 40%] 608s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_self_capped_distance[True-False-0.1-pkdtree-box0-1] PASSED [ 40%] 608s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_self_capped_distance[True-False-0.1-pkdtree-box0-100] PASSED [ 40%] 608s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_self_capped_distance[True-False-0.1-pkdtree-box1-1] PASSED [ 40%] 608s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_self_capped_distance[True-False-0.1-pkdtree-box1-100] PASSED [ 40%] 608s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_self_capped_distance[True-False-0.1-pkdtree-None-1] PASSED [ 40%] 608s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_self_capped_distance[True-False-0.1-pkdtree-None-100] PASSED [ 40%] 608s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_self_capped_distance[True-False-0.1-nsgrid-box0-1] PASSED [ 40%] 608s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_self_capped_distance[True-False-0.1-nsgrid-box0-100] PASSED [ 40%] 608s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_self_capped_distance[True-False-0.1-nsgrid-box1-1] PASSED [ 40%] 608s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_self_capped_distance[True-False-0.1-nsgrid-box1-100] PASSED [ 40%] 608s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_self_capped_distance[True-False-0.1-nsgrid-None-1] PASSED [ 40%] 608s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_self_capped_distance[True-False-0.1-nsgrid-None-100] PASSED [ 40%] 608s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_self_capped_distance[True-True-None-bruteforce-box0-1] PASSED [ 40%] 608s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_self_capped_distance[True-True-None-bruteforce-box0-100] PASSED [ 40%] 608s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_self_capped_distance[True-True-None-bruteforce-box1-1] PASSED [ 40%] 608s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_self_capped_distance[True-True-None-bruteforce-box1-100] PASSED [ 40%] 608s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_self_capped_distance[True-True-None-bruteforce-None-1] PASSED [ 40%] 608s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_self_capped_distance[True-True-None-bruteforce-None-100] PASSED [ 40%] 608s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_self_capped_distance[True-True-None-pkdtree-box0-1] PASSED [ 40%] 608s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_self_capped_distance[True-True-None-pkdtree-box0-100] PASSED [ 40%] 608s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_self_capped_distance[True-True-None-pkdtree-box1-1] PASSED [ 40%] 608s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_self_capped_distance[True-True-None-pkdtree-box1-100] PASSED [ 40%] 608s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_self_capped_distance[True-True-None-pkdtree-None-1] PASSED [ 40%] 608s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_self_capped_distance[True-True-None-pkdtree-None-100] PASSED [ 40%] 608s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_self_capped_distance[True-True-None-nsgrid-box0-1] PASSED [ 40%] 608s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_self_capped_distance[True-True-None-nsgrid-box0-100] PASSED [ 40%] 608s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_self_capped_distance[True-True-None-nsgrid-box1-1] PASSED [ 40%] 608s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_self_capped_distance[True-True-None-nsgrid-box1-100] PASSED [ 40%] 608s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_self_capped_distance[True-True-None-nsgrid-None-1] PASSED [ 40%] 608s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_self_capped_distance[True-True-None-nsgrid-None-100] PASSED [ 40%] 608s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_self_capped_distance[True-True-0.1-bruteforce-box0-1] PASSED [ 40%] 608s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_self_capped_distance[True-True-0.1-bruteforce-box0-100] PASSED [ 40%] 608s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_self_capped_distance[True-True-0.1-bruteforce-box1-1] PASSED [ 40%] 608s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_self_capped_distance[True-True-0.1-bruteforce-box1-100] PASSED [ 40%] 608s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_self_capped_distance[True-True-0.1-bruteforce-None-1] PASSED [ 40%] 608s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_self_capped_distance[True-True-0.1-bruteforce-None-100] PASSED [ 40%] 608s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_self_capped_distance[True-True-0.1-pkdtree-box0-1] PASSED [ 40%] 608s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_self_capped_distance[True-True-0.1-pkdtree-box0-100] PASSED [ 40%] 608s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_self_capped_distance[True-True-0.1-pkdtree-box1-1] PASSED [ 40%] 608s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_self_capped_distance[True-True-0.1-pkdtree-box1-100] PASSED [ 40%] 608s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_self_capped_distance[True-True-0.1-pkdtree-None-1] PASSED [ 40%] 608s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_self_capped_distance[True-True-0.1-pkdtree-None-100] PASSED [ 40%] 608s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_self_capped_distance[True-True-0.1-nsgrid-box0-1] PASSED [ 40%] 608s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_self_capped_distance[True-True-0.1-nsgrid-box0-100] PASSED [ 40%] 608s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_self_capped_distance[True-True-0.1-nsgrid-box1-1] PASSED [ 40%] 608s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_self_capped_distance[True-True-0.1-nsgrid-box1-100] PASSED [ 40%] 608s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_self_capped_distance[True-True-0.1-nsgrid-None-1] PASSED [ 40%] 608s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_self_capped_distance[True-True-0.1-nsgrid-None-100] PASSED [ 40%] 608s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_method_selfselection[1-0.02-_bruteforce_capped_self-None] PASSED [ 40%] 608s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_method_selfselection[1-0.02-_bruteforce_capped_self-box1] PASSED [ 40%] 608s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_method_selfselection[1-0.02-_bruteforce_capped_self-box2] PASSED [ 40%] 608s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_method_selfselection[1-0.2-_bruteforce_capped_self-None] PASSED [ 40%] 608s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_method_selfselection[1-0.2-_bruteforce_capped_self-box1] PASSED [ 40%] 608s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_method_selfselection[1-0.2-_bruteforce_capped_self-box2] PASSED [ 40%] 608s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_method_selfselection[600-0.02-_pkdtree_capped_self-None] PASSED [ 40%] 608s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_method_selfselection[600-0.02-_pkdtree_capped_self-box1] PASSED [ 40%] 608s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_method_selfselection[600-0.02-_pkdtree_capped_self-box2] PASSED [ 40%] 608s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_method_selfselection[600-0.2-_nsgrid_capped_self-None] PASSED [ 40%] 608s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_method_selfselection[600-0.2-_nsgrid_capped_self-box1] PASSED [ 40%] 608s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_method_selfselection[600-0.2-_nsgrid_capped_self-box2] PASSED [ 40%] 608s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_method_selection[1-0.02-_bruteforce_capped-None] PASSED [ 40%] 608s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_method_selection[1-0.02-_bruteforce_capped-box1] PASSED [ 40%] 608s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_method_selection[1-0.02-_bruteforce_capped-box2] PASSED [ 40%] 608s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_method_selection[1-0.2-_bruteforce_capped-None] PASSED [ 40%] 608s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_method_selection[1-0.2-_bruteforce_capped-box1] PASSED [ 40%] 608s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_method_selection[1-0.2-_bruteforce_capped-box2] PASSED [ 40%] 608s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_method_selection[200-0.02-_nsgrid_capped-None] PASSED [ 40%] 608s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_method_selection[200-0.02-_nsgrid_capped-box1] PASSED [ 40%] 608s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_method_selection[200-0.02-_nsgrid_capped-box2] PASSED [ 40%] 608s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_method_selection[200-0.35-_bruteforce_capped-None] PASSED [ 40%] 608s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_method_selection[200-0.35-_bruteforce_capped-box1] PASSED [ 40%] 608s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_method_selection[200-0.35-_bruteforce_capped-box2] PASSED [ 40%] 608s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_method_selection[10000-0.35-_nsgrid_capped-None] PASSED [ 40%] 608s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_method_selection[10000-0.35-_nsgrid_capped-box1] PASSED [ 40%] 608s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_method_selection[10000-0.35-_nsgrid_capped-box2] PASSED [ 40%] 608s testsuite/MDAnalysisTests/lib/test_distances.py::TestDistanceArray::test_noPBC[ref_system-serial] PASSED [ 40%] 608s testsuite/MDAnalysisTests/lib/test_distances.py::TestDistanceArray::test_noPBC[ref_system-openmp] PASSED [ 40%] 608s testsuite/MDAnalysisTests/lib/test_distances.py::TestDistanceArray::test_noPBC[ref_system_universe-serial] PASSED [ 40%] 608s testsuite/MDAnalysisTests/lib/test_distances.py::TestDistanceArray::test_noPBC[ref_system_universe-openmp] PASSED [ 40%] 608s testsuite/MDAnalysisTests/lib/test_distances.py::TestDistanceArray::test_noPBC_mixed_combinations[ref_system-ref_system-serial] PASSED [ 40%] 608s testsuite/MDAnalysisTests/lib/test_distances.py::TestDistanceArray::test_noPBC_mixed_combinations[ref_system-ref_system-openmp] PASSED [ 40%] 608s testsuite/MDAnalysisTests/lib/test_distances.py::TestDistanceArray::test_noPBC_mixed_combinations[ref_system-ref_system_universe-serial] PASSED [ 40%] 608s testsuite/MDAnalysisTests/lib/test_distances.py::TestDistanceArray::test_noPBC_mixed_combinations[ref_system-ref_system_universe-openmp] PASSED [ 40%] 608s testsuite/MDAnalysisTests/lib/test_distances.py::TestDistanceArray::test_noPBC_mixed_combinations[ref_system_universe-ref_system-serial] PASSED [ 40%] 608s testsuite/MDAnalysisTests/lib/test_distances.py::TestDistanceArray::test_noPBC_mixed_combinations[ref_system_universe-ref_system-openmp] PASSED [ 40%] 608s testsuite/MDAnalysisTests/lib/test_distances.py::TestDistanceArray::test_noPBC_mixed_combinations[ref_system_universe-ref_system_universe-serial] PASSED [ 40%] 608s testsuite/MDAnalysisTests/lib/test_distances.py::TestDistanceArray::test_noPBC_mixed_combinations[ref_system_universe-ref_system_universe-openmp] PASSED [ 40%] 608s testsuite/MDAnalysisTests/lib/test_distances.py::TestDistanceArray::test_PBC[ref_system-serial] PASSED [ 40%] 608s testsuite/MDAnalysisTests/lib/test_distances.py::TestDistanceArray::test_PBC[ref_system-openmp] PASSED [ 40%] 608s testsuite/MDAnalysisTests/lib/test_distances.py::TestDistanceArray::test_PBC[ref_system_universe-serial] PASSED [ 40%] 608s testsuite/MDAnalysisTests/lib/test_distances.py::TestDistanceArray::test_PBC[ref_system_universe-openmp] PASSED [ 40%] 608s testsuite/MDAnalysisTests/lib/test_distances.py::TestDistanceArray::test_PBC_mixed_combinations[ref_system-ref_system-serial] PASSED [ 40%] 608s testsuite/MDAnalysisTests/lib/test_distances.py::TestDistanceArray::test_PBC_mixed_combinations[ref_system-ref_system-openmp] PASSED [ 40%] 608s testsuite/MDAnalysisTests/lib/test_distances.py::TestDistanceArray::test_PBC_mixed_combinations[ref_system-ref_system_universe-serial] PASSED [ 40%] 608s testsuite/MDAnalysisTests/lib/test_distances.py::TestDistanceArray::test_PBC_mixed_combinations[ref_system-ref_system_universe-openmp] PASSED [ 40%] 608s testsuite/MDAnalysisTests/lib/test_distances.py::TestDistanceArray::test_PBC_mixed_combinations[ref_system_universe-ref_system-serial] PASSED [ 40%] 608s testsuite/MDAnalysisTests/lib/test_distances.py::TestDistanceArray::test_PBC_mixed_combinations[ref_system_universe-ref_system-openmp] PASSED [ 40%] 608s testsuite/MDAnalysisTests/lib/test_distances.py::TestDistanceArray::test_PBC_mixed_combinations[ref_system_universe-ref_system_universe-serial] PASSED [ 40%] 608s testsuite/MDAnalysisTests/lib/test_distances.py::TestDistanceArray::test_PBC_mixed_combinations[ref_system_universe-ref_system_universe-openmp] PASSED [ 40%] 608s testsuite/MDAnalysisTests/lib/test_distances.py::TestDistanceArray::test_PBC2[serial] PASSED [ 40%] 608s testsuite/MDAnalysisTests/lib/test_distances.py::TestDistanceArray::test_PBC2[openmp] PASSED [ 40%] 608s testsuite/MDAnalysisTests/lib/test_distances.py::test_distance_array_overflow_exception PASSED [ 40%] 608s testsuite/MDAnalysisTests/lib/test_distances.py::test_self_distance_array_overflow_exception PASSED [ 40%] 608s testsuite/MDAnalysisTests/lib/test_distances.py::TestDistanceArrayDCD_TRIC::test_simple[serial] PASSED [ 40%] 608s testsuite/MDAnalysisTests/lib/test_distances.py::TestDistanceArrayDCD_TRIC::test_simple[openmp] PASSED [ 40%] 608s testsuite/MDAnalysisTests/lib/test_distances.py::TestDistanceArrayDCD_TRIC::test_outarray[serial] PASSED [ 40%] 609s testsuite/MDAnalysisTests/lib/test_distances.py::TestDistanceArrayDCD_TRIC::test_outarray[openmp] PASSED [ 40%] 609s testsuite/MDAnalysisTests/lib/test_distances.py::TestDistanceArrayDCD_TRIC::test_periodic[serial] PASSED [ 40%] 609s testsuite/MDAnalysisTests/lib/test_distances.py::TestDistanceArrayDCD_TRIC::test_periodic[openmp] PASSED [ 40%] 609s testsuite/MDAnalysisTests/lib/test_distances.py::TestDistanceArrayDCD_TRIC::test_atomgroup_simple[serial] PASSED [ 40%] 609s testsuite/MDAnalysisTests/lib/test_distances.py::TestDistanceArrayDCD_TRIC::test_atomgroup_simple[openmp] PASSED [ 40%] 610s testsuite/MDAnalysisTests/lib/test_distances.py::TestDistanceArrayDCD_TRIC::test_atomgroup_matches_numpy[all-np_slice0-None-serial] PASSED [ 40%] 611s testsuite/MDAnalysisTests/lib/test_distances.py::TestDistanceArrayDCD_TRIC::test_atomgroup_matches_numpy[all-np_slice0-None-openmp] PASSED [ 40%] 612s testsuite/MDAnalysisTests/lib/test_distances.py::TestDistanceArrayDCD_TRIC::test_atomgroup_matches_numpy[all-np_slice0-box1-serial] PASSED [ 40%] 612s testsuite/MDAnalysisTests/lib/test_distances.py::TestDistanceArrayDCD_TRIC::test_atomgroup_matches_numpy[all-np_slice0-box1-openmp] PASSED [ 40%] 612s testsuite/MDAnalysisTests/lib/test_distances.py::TestDistanceArrayDCD_TRIC::test_atomgroup_matches_numpy[index 0 to 8 -np_slice1-None-serial] PASSED [ 40%] 612s testsuite/MDAnalysisTests/lib/test_distances.py::TestDistanceArrayDCD_TRIC::test_atomgroup_matches_numpy[index 0 to 8 -np_slice1-None-openmp] PASSED [ 40%] 613s testsuite/MDAnalysisTests/lib/test_distances.py::TestDistanceArrayDCD_TRIC::test_atomgroup_matches_numpy[index 0 to 8 -np_slice1-box1-serial] PASSED [ 40%] 613s testsuite/MDAnalysisTests/lib/test_distances.py::TestDistanceArrayDCD_TRIC::test_atomgroup_matches_numpy[index 0 to 8 -np_slice1-box1-openmp] PASSED [ 41%] 613s testsuite/MDAnalysisTests/lib/test_distances.py::TestDistanceArrayDCD_TRIC::test_atomgroup_matches_numpy[index 9-np_slice2-None-serial] PASSED [ 41%] 613s testsuite/MDAnalysisTests/lib/test_distances.py::TestDistanceArrayDCD_TRIC::test_atomgroup_matches_numpy[index 9-np_slice2-None-openmp] PASSED [ 41%] 613s testsuite/MDAnalysisTests/lib/test_distances.py::TestDistanceArrayDCD_TRIC::test_atomgroup_matches_numpy[index 9-np_slice2-box1-serial] PASSED [ 41%] 613s testsuite/MDAnalysisTests/lib/test_distances.py::TestDistanceArrayDCD_TRIC::test_atomgroup_matches_numpy[index 9-np_slice2-box1-openmp] PASSED [ 41%] 613s testsuite/MDAnalysisTests/lib/test_distances.py::TestDistanceArrayDCD_TRIC::test_atomgroup_matches_numpy_tric[all-np_slice0-serial] PASSED [ 41%] 613s testsuite/MDAnalysisTests/lib/test_distances.py::TestDistanceArrayDCD_TRIC::test_atomgroup_matches_numpy_tric[all-np_slice0-openmp] PASSED [ 41%] 613s testsuite/MDAnalysisTests/lib/test_distances.py::TestDistanceArrayDCD_TRIC::test_atomgroup_matches_numpy_tric[index 0 to 8 -np_slice1-serial] PASSED [ 41%] 613s testsuite/MDAnalysisTests/lib/test_distances.py::TestDistanceArrayDCD_TRIC::test_atomgroup_matches_numpy_tric[index 0 to 8 -np_slice1-openmp] PASSED [ 41%] 613s testsuite/MDAnalysisTests/lib/test_distances.py::TestDistanceArrayDCD_TRIC::test_atomgroup_matches_numpy_tric[index 9-np_slice2-serial] PASSED [ 41%] 613s testsuite/MDAnalysisTests/lib/test_distances.py::TestDistanceArrayDCD_TRIC::test_atomgroup_matches_numpy_tric[index 9-np_slice2-openmp] PASSED [ 41%] 613s testsuite/MDAnalysisTests/lib/test_distances.py::TestSelfDistanceArrayDCD_TRIC::test_simple[serial] PASSED [ 41%] 613s testsuite/MDAnalysisTests/lib/test_distances.py::TestSelfDistanceArrayDCD_TRIC::test_simple[openmp] PASSED [ 41%] 614s testsuite/MDAnalysisTests/lib/test_distances.py::TestSelfDistanceArrayDCD_TRIC::test_outarray[serial] PASSED [ 41%] 614s testsuite/MDAnalysisTests/lib/test_distances.py::TestSelfDistanceArrayDCD_TRIC::test_outarray[openmp] PASSED [ 41%] 614s testsuite/MDAnalysisTests/lib/test_distances.py::TestSelfDistanceArrayDCD_TRIC::test_periodic[serial] PASSED [ 41%] 614s testsuite/MDAnalysisTests/lib/test_distances.py::TestSelfDistanceArrayDCD_TRIC::test_periodic[openmp] PASSED [ 41%] 614s testsuite/MDAnalysisTests/lib/test_distances.py::TestSelfDistanceArrayDCD_TRIC::test_atomgroup_simple[serial] PASSED [ 41%] 614s testsuite/MDAnalysisTests/lib/test_distances.py::TestSelfDistanceArrayDCD_TRIC::test_atomgroup_simple[openmp] PASSED [ 41%] 614s testsuite/MDAnalysisTests/lib/test_distances.py::TestSelfDistanceArrayDCD_TRIC::test_atomgroup_matches_numpy[all-np_slice0-None-serial] PASSED [ 41%] 615s testsuite/MDAnalysisTests/lib/test_distances.py::TestSelfDistanceArrayDCD_TRIC::test_atomgroup_matches_numpy[all-np_slice0-None-openmp] PASSED [ 41%] 615s testsuite/MDAnalysisTests/lib/test_distances.py::TestSelfDistanceArrayDCD_TRIC::test_atomgroup_matches_numpy[all-np_slice0-box1-serial] PASSED [ 41%] 616s testsuite/MDAnalysisTests/lib/test_distances.py::TestSelfDistanceArrayDCD_TRIC::test_atomgroup_matches_numpy[all-np_slice0-box1-openmp] PASSED [ 41%] 616s testsuite/MDAnalysisTests/lib/test_distances.py::TestSelfDistanceArrayDCD_TRIC::test_atomgroup_matches_numpy[index 0 to 8 -np_slice1-None-serial] PASSED [ 41%] 616s testsuite/MDAnalysisTests/lib/test_distances.py::TestSelfDistanceArrayDCD_TRIC::test_atomgroup_matches_numpy[index 0 to 8 -np_slice1-None-openmp] PASSED [ 41%] 616s testsuite/MDAnalysisTests/lib/test_distances.py::TestSelfDistanceArrayDCD_TRIC::test_atomgroup_matches_numpy[index 0 to 8 -np_slice1-box1-serial] PASSED [ 41%] 616s testsuite/MDAnalysisTests/lib/test_distances.py::TestSelfDistanceArrayDCD_TRIC::test_atomgroup_matches_numpy[index 0 to 8 -np_slice1-box1-openmp] PASSED [ 41%] 616s testsuite/MDAnalysisTests/lib/test_distances.py::TestSelfDistanceArrayDCD_TRIC::test_atomgroup_matches_numpy[index 9-np_slice2-None-serial] PASSED [ 41%] 616s testsuite/MDAnalysisTests/lib/test_distances.py::TestSelfDistanceArrayDCD_TRIC::test_atomgroup_matches_numpy[index 9-np_slice2-None-openmp] PASSED [ 41%] 616s testsuite/MDAnalysisTests/lib/test_distances.py::TestSelfDistanceArrayDCD_TRIC::test_atomgroup_matches_numpy[index 9-np_slice2-box1-serial] PASSED [ 41%] 616s testsuite/MDAnalysisTests/lib/test_distances.py::TestSelfDistanceArrayDCD_TRIC::test_atomgroup_matches_numpy[index 9-np_slice2-box1-openmp] PASSED [ 41%] 616s testsuite/MDAnalysisTests/lib/test_distances.py::TestSelfDistanceArrayDCD_TRIC::test_atomgroup_matches_numpy_tric[index 0 to 8 -np_slice0-serial] PASSED [ 41%] 616s testsuite/MDAnalysisTests/lib/test_distances.py::TestSelfDistanceArrayDCD_TRIC::test_atomgroup_matches_numpy_tric[index 0 to 8 -np_slice0-openmp] PASSED [ 41%] 616s testsuite/MDAnalysisTests/lib/test_distances.py::TestSelfDistanceArrayDCD_TRIC::test_atomgroup_matches_numpy_tric[index 9-np_slice1-serial] PASSED [ 41%] 616s testsuite/MDAnalysisTests/lib/test_distances.py::TestSelfDistanceArrayDCD_TRIC::test_atomgroup_matches_numpy_tric[index 9-np_slice1-openmp] PASSED [ 41%] 616s testsuite/MDAnalysisTests/lib/test_distances.py::TestTriclinicDistances::test_transforms[S_mol-serial] PASSED [ 41%] 616s testsuite/MDAnalysisTests/lib/test_distances.py::TestTriclinicDistances::test_transforms[S_mol-openmp] PASSED [ 41%] 616s testsuite/MDAnalysisTests/lib/test_distances.py::TestTriclinicDistances::test_transforms[S_mol_single-serial] PASSED [ 41%] 616s testsuite/MDAnalysisTests/lib/test_distances.py::TestTriclinicDistances::test_transforms[S_mol_single-openmp] PASSED [ 41%] 616s testsuite/MDAnalysisTests/lib/test_distances.py::TestTriclinicDistances::test_selfdist[serial] PASSED [ 41%] 616s testsuite/MDAnalysisTests/lib/test_distances.py::TestTriclinicDistances::test_selfdist[openmp] PASSED [ 41%] 616s testsuite/MDAnalysisTests/lib/test_distances.py::TestTriclinicDistances::test_distarray[serial] PASSED [ 41%] 616s testsuite/MDAnalysisTests/lib/test_distances.py::TestTriclinicDistances::test_distarray[openmp] PASSED [ 41%] 616s testsuite/MDAnalysisTests/lib/test_distances.py::TestTriclinicDistances::test_pbc_dist[serial] PASSED [ 41%] 616s testsuite/MDAnalysisTests/lib/test_distances.py::TestTriclinicDistances::test_pbc_dist[openmp] PASSED [ 41%] 616s testsuite/MDAnalysisTests/lib/test_distances.py::TestTriclinicDistances::test_pbc_wrong_wassenaar_distance[serial] PASSED [ 41%] 616s testsuite/MDAnalysisTests/lib/test_distances.py::TestTriclinicDistances::test_pbc_wrong_wassenaar_distance[openmp] PASSED [ 41%] 616s testsuite/MDAnalysisTests/lib/test_distances.py::test_issue_3725[None] PASSED [ 41%] 616s testsuite/MDAnalysisTests/lib/test_distances.py::test_issue_3725[box1] PASSED [ 41%] 616s testsuite/MDAnalysisTests/lib/test_distances.py::test_issue_3725[box2] PASSED [ 41%] 616s testsuite/MDAnalysisTests/lib/test_distances.py::TestCythonFunctions::test_bonds[serial-positions-float32] PASSED [ 41%] 616s testsuite/MDAnalysisTests/lib/test_distances.py::TestCythonFunctions::test_bonds[serial-positions-float64] PASSED [ 41%] 616s testsuite/MDAnalysisTests/lib/test_distances.py::TestCythonFunctions::test_bonds[serial-positions_atomgroups-float32] PASSED [ 41%] 616s testsuite/MDAnalysisTests/lib/test_distances.py::TestCythonFunctions::test_bonds[serial-positions_atomgroups-float64] PASSED [ 41%] 616s testsuite/MDAnalysisTests/lib/test_distances.py::TestCythonFunctions::test_bonds[openmp-positions-float32] PASSED [ 41%] 616s testsuite/MDAnalysisTests/lib/test_distances.py::TestCythonFunctions::test_bonds[openmp-positions-float64] PASSED [ 41%] 616s testsuite/MDAnalysisTests/lib/test_distances.py::TestCythonFunctions::test_bonds[openmp-positions_atomgroups-float32] PASSED [ 41%] 616s testsuite/MDAnalysisTests/lib/test_distances.py::TestCythonFunctions::test_bonds[openmp-positions_atomgroups-float64] PASSED [ 41%] 616s testsuite/MDAnalysisTests/lib/test_distances.py::TestCythonFunctions::test_bonds_badbox[serial] PASSED [ 41%] 616s testsuite/MDAnalysisTests/lib/test_distances.py::TestCythonFunctions::test_bonds_badbox[openmp] PASSED [ 41%] 616s testsuite/MDAnalysisTests/lib/test_distances.py::TestCythonFunctions::test_bonds_badresult[serial] PASSED [ 41%] 616s testsuite/MDAnalysisTests/lib/test_distances.py::TestCythonFunctions::test_bonds_badresult[openmp] PASSED [ 41%] 616s testsuite/MDAnalysisTests/lib/test_distances.py::TestCythonFunctions::test_bonds_triclinic[serial-positions-float32] PASSED [ 41%] 616s testsuite/MDAnalysisTests/lib/test_distances.py::TestCythonFunctions::test_bonds_triclinic[serial-positions-float64] PASSED [ 41%] 616s testsuite/MDAnalysisTests/lib/test_distances.py::TestCythonFunctions::test_bonds_triclinic[serial-positions_atomgroups-float32] PASSED [ 41%] 616s testsuite/MDAnalysisTests/lib/test_distances.py::TestCythonFunctions::test_bonds_triclinic[serial-positions_atomgroups-float64] PASSED [ 41%] 616s testsuite/MDAnalysisTests/lib/test_distances.py::TestCythonFunctions::test_bonds_triclinic[openmp-positions-float32] PASSED [ 41%] 616s testsuite/MDAnalysisTests/lib/test_distances.py::TestCythonFunctions::test_bonds_triclinic[openmp-positions-float64] PASSED [ 41%] 616s testsuite/MDAnalysisTests/lib/test_distances.py::TestCythonFunctions::test_bonds_triclinic[openmp-positions_atomgroups-float32] PASSED [ 41%] 616s testsuite/MDAnalysisTests/lib/test_distances.py::TestCythonFunctions::test_bonds_triclinic[openmp-positions_atomgroups-float64] PASSED [ 41%] 616s testsuite/MDAnalysisTests/lib/test_distances.py::TestCythonFunctions::test_bonds_single_coords[serial-True-shift0] PASSED [ 41%] 616s testsuite/MDAnalysisTests/lib/test_distances.py::TestCythonFunctions::test_bonds_single_coords[serial-True-shift1] PASSED [ 41%] 616s testsuite/MDAnalysisTests/lib/test_distances.py::TestCythonFunctions::test_bonds_single_coords[serial-True-shift2] PASSED [ 41%] 616s testsuite/MDAnalysisTests/lib/test_distances.py::TestCythonFunctions::test_bonds_single_coords[serial-True-shift3] PASSED [ 41%] 616s testsuite/MDAnalysisTests/lib/test_distances.py::TestCythonFunctions::test_bonds_single_coords[serial-False-shift0] PASSED [ 41%] 616s testsuite/MDAnalysisTests/lib/test_distances.py::TestCythonFunctions::test_bonds_single_coords[serial-False-shift1] PASSED [ 41%] 616s testsuite/MDAnalysisTests/lib/test_distances.py::TestCythonFunctions::test_bonds_single_coords[serial-False-shift2] PASSED [ 41%] 616s testsuite/MDAnalysisTests/lib/test_distances.py::TestCythonFunctions::test_bonds_single_coords[serial-False-shift3] PASSED [ 41%] 616s testsuite/MDAnalysisTests/lib/test_distances.py::TestCythonFunctions::test_bonds_single_coords[openmp-True-shift0] PASSED [ 41%] 616s testsuite/MDAnalysisTests/lib/test_distances.py::TestCythonFunctions::test_bonds_single_coords[openmp-True-shift1] PASSED [ 41%] 616s testsuite/MDAnalysisTests/lib/test_distances.py::TestCythonFunctions::test_bonds_single_coords[openmp-True-shift2] PASSED [ 41%] 616s testsuite/MDAnalysisTests/lib/test_distances.py::TestCythonFunctions::test_bonds_single_coords[openmp-True-shift3] PASSED [ 41%] 616s testsuite/MDAnalysisTests/lib/test_distances.py::TestCythonFunctions::test_bonds_single_coords[openmp-False-shift0] PASSED [ 41%] 616s testsuite/MDAnalysisTests/lib/test_distances.py::TestCythonFunctions::test_bonds_single_coords[openmp-False-shift1] PASSED [ 41%] 616s testsuite/MDAnalysisTests/lib/test_distances.py::TestCythonFunctions::test_bonds_single_coords[openmp-False-shift2] PASSED [ 41%] 616s testsuite/MDAnalysisTests/lib/test_distances.py::TestCythonFunctions::test_bonds_single_coords[openmp-False-shift3] PASSED [ 41%] 616s testsuite/MDAnalysisTests/lib/test_distances.py::TestCythonFunctions::test_angles[serial-positions-float32] PASSED [ 41%] 616s testsuite/MDAnalysisTests/lib/test_distances.py::TestCythonFunctions::test_angles[serial-positions-float64] PASSED [ 41%] 616s testsuite/MDAnalysisTests/lib/test_distances.py::TestCythonFunctions::test_angles[serial-positions_atomgroups-float32] PASSED [ 41%] 616s testsuite/MDAnalysisTests/lib/test_distances.py::TestCythonFunctions::test_angles[serial-positions_atomgroups-float64] PASSED [ 41%] 616s testsuite/MDAnalysisTests/lib/test_distances.py::TestCythonFunctions::test_angles[openmp-positions-float32] PASSED [ 41%] 616s testsuite/MDAnalysisTests/lib/test_distances.py::TestCythonFunctions::test_angles[openmp-positions-float64] PASSED [ 41%] 616s testsuite/MDAnalysisTests/lib/test_distances.py::TestCythonFunctions::test_angles[openmp-positions_atomgroups-float32] PASSED [ 41%] 616s testsuite/MDAnalysisTests/lib/test_distances.py::TestCythonFunctions::test_angles[openmp-positions_atomgroups-float64] PASSED [ 41%] 616s testsuite/MDAnalysisTests/lib/test_distances.py::TestCythonFunctions::test_angles_bad_result[serial] PASSED [ 41%] 616s testsuite/MDAnalysisTests/lib/test_distances.py::TestCythonFunctions::test_angles_bad_result[openmp] PASSED [ 41%] 616s testsuite/MDAnalysisTests/lib/test_distances.py::TestCythonFunctions::test_angles_single_coords[serial-True-shift0-case0] PASSED [ 41%] 616s testsuite/MDAnalysisTests/lib/test_distances.py::TestCythonFunctions::test_angles_single_coords[serial-True-shift0-case1] PASSED [ 41%] 616s testsuite/MDAnalysisTests/lib/test_distances.py::TestCythonFunctions::test_angles_single_coords[serial-True-shift0-case2] PASSED [ 41%] 616s testsuite/MDAnalysisTests/lib/test_distances.py::TestCythonFunctions::test_angles_single_coords[serial-True-shift1-case0] PASSED [ 41%] 616s testsuite/MDAnalysisTests/lib/test_distances.py::TestCythonFunctions::test_angles_single_coords[serial-True-shift1-case1] PASSED [ 41%] 616s testsuite/MDAnalysisTests/lib/test_distances.py::TestCythonFunctions::test_angles_single_coords[serial-True-shift1-case2] PASSED [ 41%] 616s testsuite/MDAnalysisTests/lib/test_distances.py::TestCythonFunctions::test_angles_single_coords[serial-True-shift2-case0] PASSED [ 41%] 616s testsuite/MDAnalysisTests/lib/test_distances.py::TestCythonFunctions::test_angles_single_coords[serial-True-shift2-case1] PASSED [ 41%] 616s testsuite/MDAnalysisTests/lib/test_distances.py::TestCythonFunctions::test_angles_single_coords[serial-True-shift2-case2] PASSED [ 41%] 616s testsuite/MDAnalysisTests/lib/test_distances.py::TestCythonFunctions::test_angles_single_coords[serial-True-shift3-case0] PASSED [ 41%] 616s testsuite/MDAnalysisTests/lib/test_distances.py::TestCythonFunctions::test_angles_single_coords[serial-True-shift3-case1] PASSED [ 41%] 616s testsuite/MDAnalysisTests/lib/test_distances.py::TestCythonFunctions::test_angles_single_coords[serial-True-shift3-case2] PASSED [ 41%] 616s testsuite/MDAnalysisTests/lib/test_distances.py::TestCythonFunctions::test_angles_single_coords[serial-False-shift0-case0] PASSED [ 41%] 616s testsuite/MDAnalysisTests/lib/test_distances.py::TestCythonFunctions::test_angles_single_coords[serial-False-shift0-case1] PASSED [ 41%] 616s testsuite/MDAnalysisTests/lib/test_distances.py::TestCythonFunctions::test_angles_single_coords[serial-False-shift0-case2] PASSED [ 41%] 616s testsuite/MDAnalysisTests/lib/test_distances.py::TestCythonFunctions::test_angles_single_coords[serial-False-shift1-case0] PASSED [ 41%] 616s testsuite/MDAnalysisTests/lib/test_distances.py::TestCythonFunctions::test_angles_single_coords[serial-False-shift1-case1] PASSED [ 41%] 616s testsuite/MDAnalysisTests/lib/test_distances.py::TestCythonFunctions::test_angles_single_coords[serial-False-shift1-case2] PASSED [ 41%] 616s testsuite/MDAnalysisTests/lib/test_distances.py::TestCythonFunctions::test_angles_single_coords[serial-False-shift2-case0] PASSED [ 41%] 616s testsuite/MDAnalysisTests/lib/test_distances.py::TestCythonFunctions::test_angles_single_coords[serial-False-shift2-case1] PASSED [ 41%] 616s testsuite/MDAnalysisTests/lib/test_distances.py::TestCythonFunctions::test_angles_single_coords[serial-False-shift2-case2] PASSED [ 41%] 616s testsuite/MDAnalysisTests/lib/test_distances.py::TestCythonFunctions::test_angles_single_coords[serial-False-shift3-case0] PASSED [ 41%] 616s testsuite/MDAnalysisTests/lib/test_distances.py::TestCythonFunctions::test_angles_single_coords[serial-False-shift3-case1] PASSED [ 41%] 616s testsuite/MDAnalysisTests/lib/test_distances.py::TestCythonFunctions::test_angles_single_coords[serial-False-shift3-case2] PASSED [ 41%] 616s testsuite/MDAnalysisTests/lib/test_distances.py::TestCythonFunctions::test_angles_single_coords[openmp-True-shift0-case0] PASSED [ 41%] 616s testsuite/MDAnalysisTests/lib/test_distances.py::TestCythonFunctions::test_angles_single_coords[openmp-True-shift0-case1] PASSED [ 41%] 616s testsuite/MDAnalysisTests/lib/test_distances.py::TestCythonFunctions::test_angles_single_coords[openmp-True-shift0-case2] PASSED [ 41%] 616s testsuite/MDAnalysisTests/lib/test_distances.py::TestCythonFunctions::test_angles_single_coords[openmp-True-shift1-case0] PASSED [ 41%] 616s testsuite/MDAnalysisTests/lib/test_distances.py::TestCythonFunctions::test_angles_single_coords[openmp-True-shift1-case1] PASSED [ 41%] 616s testsuite/MDAnalysisTests/lib/test_distances.py::TestCythonFunctions::test_angles_single_coords[openmp-True-shift1-case2] PASSED [ 41%] 616s testsuite/MDAnalysisTests/lib/test_distances.py::TestCythonFunctions::test_angles_single_coords[openmp-True-shift2-case0] PASSED [ 41%] 616s testsuite/MDAnalysisTests/lib/test_distances.py::TestCythonFunctions::test_angles_single_coords[openmp-True-shift2-case1] PASSED [ 41%] 616s testsuite/MDAnalysisTests/lib/test_distances.py::TestCythonFunctions::test_angles_single_coords[openmp-True-shift2-case2] PASSED [ 41%] 616s testsuite/MDAnalysisTests/lib/test_distances.py::TestCythonFunctions::test_angles_single_coords[openmp-True-shift3-case0] PASSED [ 41%] 616s testsuite/MDAnalysisTests/lib/test_distances.py::TestCythonFunctions::test_angles_single_coords[openmp-True-shift3-case1] PASSED [ 41%] 616s testsuite/MDAnalysisTests/lib/test_distances.py::TestCythonFunctions::test_angles_single_coords[openmp-True-shift3-case2] PASSED [ 41%] 616s testsuite/MDAnalysisTests/lib/test_distances.py::TestCythonFunctions::test_angles_single_coords[openmp-False-shift0-case0] PASSED [ 41%] 616s testsuite/MDAnalysisTests/lib/test_distances.py::TestCythonFunctions::test_angles_single_coords[openmp-False-shift0-case1] PASSED [ 41%] 616s testsuite/MDAnalysisTests/lib/test_distances.py::TestCythonFunctions::test_angles_single_coords[openmp-False-shift0-case2] PASSED [ 41%] 616s testsuite/MDAnalysisTests/lib/test_distances.py::TestCythonFunctions::test_angles_single_coords[openmp-False-shift1-case0] PASSED [ 41%] 616s testsuite/MDAnalysisTests/lib/test_distances.py::TestCythonFunctions::test_angles_single_coords[openmp-False-shift1-case1] PASSED [ 41%] 616s testsuite/MDAnalysisTests/lib/test_distances.py::TestCythonFunctions::test_angles_single_coords[openmp-False-shift1-case2] PASSED [ 41%] 616s testsuite/MDAnalysisTests/lib/test_distances.py::TestCythonFunctions::test_angles_single_coords[openmp-False-shift2-case0] PASSED [ 41%] 616s testsuite/MDAnalysisTests/lib/test_distances.py::TestCythonFunctions::test_angles_single_coords[openmp-False-shift2-case1] PASSED [ 41%] 616s testsuite/MDAnalysisTests/lib/test_distances.py::TestCythonFunctions::test_angles_single_coords[openmp-False-shift2-case2] PASSED [ 41%] 616s testsuite/MDAnalysisTests/lib/test_distances.py::TestCythonFunctions::test_angles_single_coords[openmp-False-shift3-case0] PASSED [ 41%] 616s testsuite/MDAnalysisTests/lib/test_distances.py::TestCythonFunctions::test_angles_single_coords[openmp-False-shift3-case1] PASSED [ 41%] 616s testsuite/MDAnalysisTests/lib/test_distances.py::TestCythonFunctions::test_angles_single_coords[openmp-False-shift3-case2] PASSED [ 41%] 616s testsuite/MDAnalysisTests/lib/test_distances.py::TestCythonFunctions::test_dihedrals[serial-positions-float32] PASSED [ 41%] 616s testsuite/MDAnalysisTests/lib/test_distances.py::TestCythonFunctions::test_dihedrals[serial-positions-float64] PASSED [ 41%] 616s testsuite/MDAnalysisTests/lib/test_distances.py::TestCythonFunctions::test_dihedrals[serial-positions_atomgroups-float32] PASSED [ 41%] 616s testsuite/MDAnalysisTests/lib/test_distances.py::TestCythonFunctions::test_dihedrals[serial-positions_atomgroups-float64] PASSED [ 41%] 616s testsuite/MDAnalysisTests/lib/test_distances.py::TestCythonFunctions::test_dihedrals[openmp-positions-float32] PASSED [ 41%] 616s testsuite/MDAnalysisTests/lib/test_distances.py::TestCythonFunctions::test_dihedrals[openmp-positions-float64] PASSED [ 41%] 616s testsuite/MDAnalysisTests/lib/test_distances.py::TestCythonFunctions::test_dihedrals[openmp-positions_atomgroups-float32] PASSED [ 41%] 616s testsuite/MDAnalysisTests/lib/test_distances.py::TestCythonFunctions::test_dihedrals[openmp-positions_atomgroups-float64] PASSED [ 41%] 616s testsuite/MDAnalysisTests/lib/test_distances.py::TestCythonFunctions::test_dihedrals_wronglength[serial] PASSED [ 41%] 616s testsuite/MDAnalysisTests/lib/test_distances.py::TestCythonFunctions::test_dihedrals_wronglength[openmp] PASSED [ 41%] 616s testsuite/MDAnalysisTests/lib/test_distances.py::TestCythonFunctions::test_dihedrals_bad_result[serial] PASSED [ 41%] 616s testsuite/MDAnalysisTests/lib/test_distances.py::TestCythonFunctions::test_dihedrals_bad_result[openmp] PASSED [ 41%] 616s testsuite/MDAnalysisTests/lib/test_distances.py::TestCythonFunctions::test_dihedrals_single_coords[serial-True-shift0-case0] PASSED [ 41%] 616s testsuite/MDAnalysisTests/lib/test_distances.py::TestCythonFunctions::test_dihedrals_single_coords[serial-True-shift0-case1] PASSED [ 41%] 616s testsuite/MDAnalysisTests/lib/test_distances.py::TestCythonFunctions::test_dihedrals_single_coords[serial-True-shift0-case2] PASSED [ 41%] 616s testsuite/MDAnalysisTests/lib/test_distances.py::TestCythonFunctions::test_dihedrals_single_coords[serial-True-shift0-case3] PASSED [ 41%] 616s testsuite/MDAnalysisTests/lib/test_distances.py::TestCythonFunctions::test_dihedrals_single_coords[serial-True-shift0-case4] PASSED [ 41%] 616s testsuite/MDAnalysisTests/lib/test_distances.py::TestCythonFunctions::test_dihedrals_single_coords[serial-True-shift0-case5] PASSED [ 41%] 616s testsuite/MDAnalysisTests/lib/test_distances.py::TestCythonFunctions::test_dihedrals_single_coords[serial-True-shift1-case0] PASSED [ 41%] 616s testsuite/MDAnalysisTests/lib/test_distances.py::TestCythonFunctions::test_dihedrals_single_coords[serial-True-shift1-case1] PASSED [ 41%] 616s testsuite/MDAnalysisTests/lib/test_distances.py::TestCythonFunctions::test_dihedrals_single_coords[serial-True-shift1-case2] PASSED [ 41%] 616s testsuite/MDAnalysisTests/lib/test_distances.py::TestCythonFunctions::test_dihedrals_single_coords[serial-True-shift1-case3] PASSED [ 41%] 616s testsuite/MDAnalysisTests/lib/test_distances.py::TestCythonFunctions::test_dihedrals_single_coords[serial-True-shift1-case4] PASSED [ 41%] 616s testsuite/MDAnalysisTests/lib/test_distances.py::TestCythonFunctions::test_dihedrals_single_coords[serial-True-shift1-case5] PASSED [ 41%] 616s testsuite/MDAnalysisTests/lib/test_distances.py::TestCythonFunctions::test_dihedrals_single_coords[serial-True-shift2-case0] PASSED [ 41%] 616s testsuite/MDAnalysisTests/lib/test_distances.py::TestCythonFunctions::test_dihedrals_single_coords[serial-True-shift2-case1] PASSED [ 41%] 616s testsuite/MDAnalysisTests/lib/test_distances.py::TestCythonFunctions::test_dihedrals_single_coords[serial-True-shift2-case2] PASSED [ 41%] 616s testsuite/MDAnalysisTests/lib/test_distances.py::TestCythonFunctions::test_dihedrals_single_coords[serial-True-shift2-case3] PASSED [ 41%] 616s testsuite/MDAnalysisTests/lib/test_distances.py::TestCythonFunctions::test_dihedrals_single_coords[serial-True-shift2-case4] PASSED [ 41%] 616s testsuite/MDAnalysisTests/lib/test_distances.py::TestCythonFunctions::test_dihedrals_single_coords[serial-True-shift2-case5] PASSED [ 41%] 616s testsuite/MDAnalysisTests/lib/test_distances.py::TestCythonFunctions::test_dihedrals_single_coords[serial-True-shift3-case0] PASSED [ 41%] 616s testsuite/MDAnalysisTests/lib/test_distances.py::TestCythonFunctions::test_dihedrals_single_coords[serial-True-shift3-case1] PASSED [ 41%] 616s testsuite/MDAnalysisTests/lib/test_distances.py::TestCythonFunctions::test_dihedrals_single_coords[serial-True-shift3-case2] PASSED [ 41%] 616s testsuite/MDAnalysisTests/lib/test_distances.py::TestCythonFunctions::test_dihedrals_single_coords[serial-True-shift3-case3] PASSED [ 41%] 616s testsuite/MDAnalysisTests/lib/test_distances.py::TestCythonFunctions::test_dihedrals_single_coords[serial-True-shift3-case4] PASSED [ 41%] 616s testsuite/MDAnalysisTests/lib/test_distances.py::TestCythonFunctions::test_dihedrals_single_coords[serial-True-shift3-case5] PASSED [ 41%] 616s testsuite/MDAnalysisTests/lib/test_distances.py::TestCythonFunctions::test_dihedrals_single_coords[serial-False-shift0-case0] PASSED [ 41%] 616s testsuite/MDAnalysisTests/lib/test_distances.py::TestCythonFunctions::test_dihedrals_single_coords[serial-False-shift0-case1] PASSED [ 41%] 616s testsuite/MDAnalysisTests/lib/test_distances.py::TestCythonFunctions::test_dihedrals_single_coords[serial-False-shift0-case2] PASSED [ 41%] 616s testsuite/MDAnalysisTests/lib/test_distances.py::TestCythonFunctions::test_dihedrals_single_coords[serial-False-shift0-case3] PASSED [ 41%] 616s testsuite/MDAnalysisTests/lib/test_distances.py::TestCythonFunctions::test_dihedrals_single_coords[serial-False-shift0-case4] PASSED [ 42%] 616s testsuite/MDAnalysisTests/lib/test_distances.py::TestCythonFunctions::test_dihedrals_single_coords[serial-False-shift0-case5] PASSED [ 42%] 616s testsuite/MDAnalysisTests/lib/test_distances.py::TestCythonFunctions::test_dihedrals_single_coords[serial-False-shift1-case0] PASSED [ 42%] 616s testsuite/MDAnalysisTests/lib/test_distances.py::TestCythonFunctions::test_dihedrals_single_coords[serial-False-shift1-case1] PASSED [ 42%] 616s testsuite/MDAnalysisTests/lib/test_distances.py::TestCythonFunctions::test_dihedrals_single_coords[serial-False-shift1-case2] PASSED [ 42%] 616s testsuite/MDAnalysisTests/lib/test_distances.py::TestCythonFunctions::test_dihedrals_single_coords[serial-False-shift1-case3] PASSED [ 42%] 616s testsuite/MDAnalysisTests/lib/test_distances.py::TestCythonFunctions::test_dihedrals_single_coords[serial-False-shift1-case4] PASSED [ 42%] 616s testsuite/MDAnalysisTests/lib/test_distances.py::TestCythonFunctions::test_dihedrals_single_coords[serial-False-shift1-case5] PASSED [ 42%] 616s testsuite/MDAnalysisTests/lib/test_distances.py::TestCythonFunctions::test_dihedrals_single_coords[serial-False-shift2-case0] PASSED [ 42%] 616s testsuite/MDAnalysisTests/lib/test_distances.py::TestCythonFunctions::test_dihedrals_single_coords[serial-False-shift2-case1] PASSED [ 42%] 616s testsuite/MDAnalysisTests/lib/test_distances.py::TestCythonFunctions::test_dihedrals_single_coords[serial-False-shift2-case2] PASSED [ 42%] 616s testsuite/MDAnalysisTests/lib/test_distances.py::TestCythonFunctions::test_dihedrals_single_coords[serial-False-shift2-case3] PASSED [ 42%] 616s testsuite/MDAnalysisTests/lib/test_distances.py::TestCythonFunctions::test_dihedrals_single_coords[serial-False-shift2-case4] PASSED [ 42%] 616s testsuite/MDAnalysisTests/lib/test_distances.py::TestCythonFunctions::test_dihedrals_single_coords[serial-False-shift2-case5] PASSED [ 42%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestCythonFunctions::test_dihedrals_single_coords[serial-False-shift3-case0] PASSED [ 42%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestCythonFunctions::test_dihedrals_single_coords[serial-False-shift3-case1] PASSED [ 42%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestCythonFunctions::test_dihedrals_single_coords[serial-False-shift3-case2] PASSED [ 42%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestCythonFunctions::test_dihedrals_single_coords[serial-False-shift3-case3] PASSED [ 42%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestCythonFunctions::test_dihedrals_single_coords[serial-False-shift3-case4] PASSED [ 42%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestCythonFunctions::test_dihedrals_single_coords[serial-False-shift3-case5] PASSED [ 42%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestCythonFunctions::test_dihedrals_single_coords[openmp-True-shift0-case0] PASSED [ 42%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestCythonFunctions::test_dihedrals_single_coords[openmp-True-shift0-case1] PASSED [ 42%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestCythonFunctions::test_dihedrals_single_coords[openmp-True-shift0-case2] PASSED [ 42%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestCythonFunctions::test_dihedrals_single_coords[openmp-True-shift0-case3] PASSED [ 42%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestCythonFunctions::test_dihedrals_single_coords[openmp-True-shift0-case4] PASSED [ 42%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestCythonFunctions::test_dihedrals_single_coords[openmp-True-shift0-case5] PASSED [ 42%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestCythonFunctions::test_dihedrals_single_coords[openmp-True-shift1-case0] PASSED [ 42%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestCythonFunctions::test_dihedrals_single_coords[openmp-True-shift1-case1] PASSED [ 42%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestCythonFunctions::test_dihedrals_single_coords[openmp-True-shift1-case2] PASSED [ 42%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestCythonFunctions::test_dihedrals_single_coords[openmp-True-shift1-case3] PASSED [ 42%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestCythonFunctions::test_dihedrals_single_coords[openmp-True-shift1-case4] PASSED [ 42%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestCythonFunctions::test_dihedrals_single_coords[openmp-True-shift1-case5] PASSED [ 42%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestCythonFunctions::test_dihedrals_single_coords[openmp-True-shift2-case0] PASSED [ 42%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestCythonFunctions::test_dihedrals_single_coords[openmp-True-shift2-case1] PASSED [ 42%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestCythonFunctions::test_dihedrals_single_coords[openmp-True-shift2-case2] PASSED [ 42%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestCythonFunctions::test_dihedrals_single_coords[openmp-True-shift2-case3] PASSED [ 42%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestCythonFunctions::test_dihedrals_single_coords[openmp-True-shift2-case4] PASSED [ 42%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestCythonFunctions::test_dihedrals_single_coords[openmp-True-shift2-case5] PASSED [ 42%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestCythonFunctions::test_dihedrals_single_coords[openmp-True-shift3-case0] PASSED [ 42%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestCythonFunctions::test_dihedrals_single_coords[openmp-True-shift3-case1] PASSED [ 42%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestCythonFunctions::test_dihedrals_single_coords[openmp-True-shift3-case2] PASSED [ 42%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestCythonFunctions::test_dihedrals_single_coords[openmp-True-shift3-case3] PASSED [ 42%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestCythonFunctions::test_dihedrals_single_coords[openmp-True-shift3-case4] PASSED [ 42%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestCythonFunctions::test_dihedrals_single_coords[openmp-True-shift3-case5] PASSED [ 42%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestCythonFunctions::test_dihedrals_single_coords[openmp-False-shift0-case0] PASSED [ 42%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestCythonFunctions::test_dihedrals_single_coords[openmp-False-shift0-case1] PASSED [ 42%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestCythonFunctions::test_dihedrals_single_coords[openmp-False-shift0-case2] PASSED [ 42%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestCythonFunctions::test_dihedrals_single_coords[openmp-False-shift0-case3] PASSED [ 42%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestCythonFunctions::test_dihedrals_single_coords[openmp-False-shift0-case4] PASSED [ 42%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestCythonFunctions::test_dihedrals_single_coords[openmp-False-shift0-case5] PASSED [ 42%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestCythonFunctions::test_dihedrals_single_coords[openmp-False-shift1-case0] PASSED [ 42%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestCythonFunctions::test_dihedrals_single_coords[openmp-False-shift1-case1] PASSED [ 42%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestCythonFunctions::test_dihedrals_single_coords[openmp-False-shift1-case2] PASSED [ 42%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestCythonFunctions::test_dihedrals_single_coords[openmp-False-shift1-case3] PASSED [ 42%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestCythonFunctions::test_dihedrals_single_coords[openmp-False-shift1-case4] PASSED [ 42%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestCythonFunctions::test_dihedrals_single_coords[openmp-False-shift1-case5] PASSED [ 42%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestCythonFunctions::test_dihedrals_single_coords[openmp-False-shift2-case0] PASSED [ 42%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestCythonFunctions::test_dihedrals_single_coords[openmp-False-shift2-case1] PASSED [ 42%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestCythonFunctions::test_dihedrals_single_coords[openmp-False-shift2-case2] PASSED [ 42%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestCythonFunctions::test_dihedrals_single_coords[openmp-False-shift2-case3] PASSED [ 42%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestCythonFunctions::test_dihedrals_single_coords[openmp-False-shift2-case4] PASSED [ 42%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestCythonFunctions::test_dihedrals_single_coords[openmp-False-shift2-case5] PASSED [ 42%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestCythonFunctions::test_dihedrals_single_coords[openmp-False-shift3-case0] PASSED [ 42%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestCythonFunctions::test_dihedrals_single_coords[openmp-False-shift3-case1] PASSED [ 42%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestCythonFunctions::test_dihedrals_single_coords[openmp-False-shift3-case2] PASSED [ 42%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestCythonFunctions::test_dihedrals_single_coords[openmp-False-shift3-case3] PASSED [ 42%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestCythonFunctions::test_dihedrals_single_coords[openmp-False-shift3-case4] PASSED [ 42%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestCythonFunctions::test_dihedrals_single_coords[openmp-False-shift3-case5] PASSED [ 42%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestCythonFunctions::test_numpy_compliance_bonds[serial] PASSED [ 42%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestCythonFunctions::test_numpy_compliance_bonds[openmp] PASSED [ 42%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestCythonFunctions::test_numpy_compliance_angles[serial] PASSED [ 42%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestCythonFunctions::test_numpy_compliance_angles[openmp] PASSED [ 42%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestCythonFunctions::test_numpy_compliance_dihedrals[serial] PASSED [ 42%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestCythonFunctions::test_numpy_compliance_dihedrals[openmp] PASSED [ 42%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::Test_apply_PBC::test_ortho_PBC[DCD_universe_pos-serial] PASSED [ 42%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::Test_apply_PBC::test_ortho_PBC[DCD_universe_pos-openmp] PASSED [ 42%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::Test_apply_PBC::test_ortho_PBC[DCD_universe_ag-serial] PASSED [ 42%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::Test_apply_PBC::test_ortho_PBC[DCD_universe_ag-openmp] PASSED [ 42%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::Test_apply_PBC::test_tric_PBC[Triclinic_universe_pos_box-serial] PASSED [ 42%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::Test_apply_PBC::test_tric_PBC[Triclinic_universe_pos_box-openmp] PASSED [ 42%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::Test_apply_PBC::test_tric_PBC[Triclinic_universe_ag_box-serial] PASSED [ 42%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::Test_apply_PBC::test_tric_PBC[Triclinic_universe_ag_box-openmp] PASSED [ 42%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::Test_apply_PBC::test_coords_strictly_in_central_image_ortho[serial] PASSED [ 42%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::Test_apply_PBC::test_coords_strictly_in_central_image_ortho[openmp] PASSED [ 42%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::Test_apply_PBC::test_coords_in_central_image_tric[serial] PASSED [ 42%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::Test_apply_PBC::test_coords_in_central_image_tric[openmp] PASSED [ 42%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestPeriodicAngles::test_angles[serial] PASSED [ 42%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestPeriodicAngles::test_angles[openmp] PASSED [ 42%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestPeriodicAngles::test_dihedrals[serial] PASSED [ 42%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestPeriodicAngles::test_dihedrals[openmp] PASSED [ 42%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestInputUnchanged::test_input_unchanged_distance_array[serial-box0] PASSED [ 42%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestInputUnchanged::test_input_unchanged_distance_array[serial-box1] PASSED [ 42%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestInputUnchanged::test_input_unchanged_distance_array[serial-None] PASSED [ 42%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestInputUnchanged::test_input_unchanged_distance_array[openmp-box0] PASSED [ 42%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestInputUnchanged::test_input_unchanged_distance_array[openmp-box1] PASSED [ 42%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestInputUnchanged::test_input_unchanged_distance_array[openmp-None] PASSED [ 42%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestInputUnchanged::test_input_unchanged_distance_array_atomgroup[serial-box0] PASSED [ 42%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestInputUnchanged::test_input_unchanged_distance_array_atomgroup[serial-box1] PASSED [ 42%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestInputUnchanged::test_input_unchanged_distance_array_atomgroup[serial-None] PASSED [ 42%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestInputUnchanged::test_input_unchanged_distance_array_atomgroup[openmp-box0] PASSED [ 42%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestInputUnchanged::test_input_unchanged_distance_array_atomgroup[openmp-box1] PASSED [ 42%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestInputUnchanged::test_input_unchanged_distance_array_atomgroup[openmp-None] PASSED [ 42%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestInputUnchanged::test_input_unchanged_self_distance_array[serial-box0] PASSED [ 42%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestInputUnchanged::test_input_unchanged_self_distance_array[serial-box1] PASSED [ 42%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestInputUnchanged::test_input_unchanged_self_distance_array[serial-None] PASSED [ 42%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestInputUnchanged::test_input_unchanged_self_distance_array[openmp-box0] PASSED [ 42%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestInputUnchanged::test_input_unchanged_self_distance_array[openmp-box1] PASSED [ 42%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestInputUnchanged::test_input_unchanged_self_distance_array[openmp-None] PASSED [ 42%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestInputUnchanged::test_input_unchanged_self_distance_array_atomgroup[serial-box0] PASSED [ 42%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestInputUnchanged::test_input_unchanged_self_distance_array_atomgroup[serial-box1] PASSED [ 42%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestInputUnchanged::test_input_unchanged_self_distance_array_atomgroup[serial-None] PASSED [ 42%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestInputUnchanged::test_input_unchanged_self_distance_array_atomgroup[openmp-box0] PASSED [ 42%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestInputUnchanged::test_input_unchanged_self_distance_array_atomgroup[openmp-box1] PASSED [ 42%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestInputUnchanged::test_input_unchanged_self_distance_array_atomgroup[openmp-None] PASSED [ 42%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestInputUnchanged::test_input_unchanged_capped_distance[bruteforce-box0] PASSED [ 42%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestInputUnchanged::test_input_unchanged_capped_distance[bruteforce-box1] PASSED [ 42%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestInputUnchanged::test_input_unchanged_capped_distance[bruteforce-None] PASSED [ 42%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestInputUnchanged::test_input_unchanged_capped_distance[pkdtree-box0] PASSED [ 42%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestInputUnchanged::test_input_unchanged_capped_distance[pkdtree-box1] PASSED [ 42%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestInputUnchanged::test_input_unchanged_capped_distance[pkdtree-None] PASSED [ 42%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestInputUnchanged::test_input_unchanged_capped_distance[nsgrid-box0] PASSED [ 42%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestInputUnchanged::test_input_unchanged_capped_distance[nsgrid-box1] PASSED [ 42%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestInputUnchanged::test_input_unchanged_capped_distance[nsgrid-None] PASSED [ 42%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestInputUnchanged::test_input_unchanged_capped_distance[None-box0] PASSED [ 42%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestInputUnchanged::test_input_unchanged_capped_distance[None-box1] PASSED [ 42%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestInputUnchanged::test_input_unchanged_capped_distance[None-None] PASSED [ 42%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestInputUnchanged::test_input_unchanged_self_capped_distance[bruteforce-box0] PASSED [ 42%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestInputUnchanged::test_input_unchanged_self_capped_distance[bruteforce-box1] PASSED [ 42%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestInputUnchanged::test_input_unchanged_self_capped_distance[bruteforce-None] PASSED [ 42%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestInputUnchanged::test_input_unchanged_self_capped_distance[pkdtree-box0] PASSED [ 42%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestInputUnchanged::test_input_unchanged_self_capped_distance[pkdtree-box1] PASSED [ 42%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestInputUnchanged::test_input_unchanged_self_capped_distance[pkdtree-None] PASSED [ 42%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestInputUnchanged::test_input_unchanged_self_capped_distance[nsgrid-box0] PASSED [ 42%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestInputUnchanged::test_input_unchanged_self_capped_distance[nsgrid-box1] PASSED [ 42%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestInputUnchanged::test_input_unchanged_self_capped_distance[nsgrid-None] PASSED [ 42%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestInputUnchanged::test_input_unchanged_self_capped_distance[None-box0] PASSED [ 42%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestInputUnchanged::test_input_unchanged_self_capped_distance[None-box1] PASSED [ 42%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestInputUnchanged::test_input_unchanged_self_capped_distance[None-None] PASSED [ 42%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestInputUnchanged::test_input_unchanged_transform_RtoS_and_StoR[serial-box0] PASSED [ 42%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestInputUnchanged::test_input_unchanged_transform_RtoS_and_StoR[serial-box1] PASSED [ 42%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestInputUnchanged::test_input_unchanged_transform_RtoS_and_StoR[openmp-box0] PASSED [ 42%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestInputUnchanged::test_input_unchanged_transform_RtoS_and_StoR[openmp-box1] PASSED [ 42%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestInputUnchanged::test_input_unchanged_calc_bonds[serial-box0] PASSED [ 42%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestInputUnchanged::test_input_unchanged_calc_bonds[serial-box1] PASSED [ 42%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestInputUnchanged::test_input_unchanged_calc_bonds[serial-None] PASSED [ 42%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestInputUnchanged::test_input_unchanged_calc_bonds[openmp-box0] PASSED [ 42%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestInputUnchanged::test_input_unchanged_calc_bonds[openmp-box1] PASSED [ 42%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestInputUnchanged::test_input_unchanged_calc_bonds[openmp-None] PASSED [ 42%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestInputUnchanged::test_input_unchanged_calc_bonds_atomgroup[serial-box0] PASSED [ 42%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestInputUnchanged::test_input_unchanged_calc_bonds_atomgroup[serial-box1] PASSED [ 42%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestInputUnchanged::test_input_unchanged_calc_bonds_atomgroup[serial-None] PASSED [ 42%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestInputUnchanged::test_input_unchanged_calc_bonds_atomgroup[openmp-box0] PASSED [ 42%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestInputUnchanged::test_input_unchanged_calc_bonds_atomgroup[openmp-box1] PASSED [ 42%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestInputUnchanged::test_input_unchanged_calc_bonds_atomgroup[openmp-None] PASSED [ 42%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestInputUnchanged::test_input_unchanged_calc_angles[serial-box0] PASSED [ 42%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestInputUnchanged::test_input_unchanged_calc_angles[serial-box1] PASSED [ 42%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestInputUnchanged::test_input_unchanged_calc_angles[serial-None] PASSED [ 42%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestInputUnchanged::test_input_unchanged_calc_angles[openmp-box0] PASSED [ 42%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestInputUnchanged::test_input_unchanged_calc_angles[openmp-box1] PASSED [ 42%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestInputUnchanged::test_input_unchanged_calc_angles[openmp-None] PASSED [ 42%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestInputUnchanged::test_input_unchanged_calc_angles_atomgroup[serial-box0] PASSED [ 42%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestInputUnchanged::test_input_unchanged_calc_angles_atomgroup[serial-box1] PASSED [ 42%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestInputUnchanged::test_input_unchanged_calc_angles_atomgroup[serial-None] PASSED [ 42%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestInputUnchanged::test_input_unchanged_calc_angles_atomgroup[openmp-box0] PASSED [ 42%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestInputUnchanged::test_input_unchanged_calc_angles_atomgroup[openmp-box1] PASSED [ 42%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestInputUnchanged::test_input_unchanged_calc_angles_atomgroup[openmp-None] PASSED [ 42%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestInputUnchanged::test_input_unchanged_calc_dihedrals[serial-box0] PASSED [ 42%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestInputUnchanged::test_input_unchanged_calc_dihedrals[serial-box1] PASSED [ 42%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestInputUnchanged::test_input_unchanged_calc_dihedrals[serial-None] PASSED [ 42%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestInputUnchanged::test_input_unchanged_calc_dihedrals[openmp-box0] PASSED [ 42%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestInputUnchanged::test_input_unchanged_calc_dihedrals[openmp-box1] PASSED [ 42%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestInputUnchanged::test_input_unchanged_calc_dihedrals[openmp-None] PASSED [ 42%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestInputUnchanged::test_input_unchanged_calc_dihedrals_atomgroup[serial-box0] PASSED [ 42%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestInputUnchanged::test_input_unchanged_calc_dihedrals_atomgroup[serial-box1] PASSED [ 42%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestInputUnchanged::test_input_unchanged_calc_dihedrals_atomgroup[serial-None] PASSED [ 42%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestInputUnchanged::test_input_unchanged_calc_dihedrals_atomgroup[openmp-box0] PASSED [ 42%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestInputUnchanged::test_input_unchanged_calc_dihedrals_atomgroup[openmp-box1] PASSED [ 42%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestInputUnchanged::test_input_unchanged_calc_dihedrals_atomgroup[openmp-None] PASSED [ 42%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestInputUnchanged::test_input_unchanged_apply_PBC[serial-box0] PASSED [ 42%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestInputUnchanged::test_input_unchanged_apply_PBC[serial-box1] PASSED [ 42%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestInputUnchanged::test_input_unchanged_apply_PBC[openmp-box0] PASSED [ 42%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestInputUnchanged::test_input_unchanged_apply_PBC[openmp-box1] PASSED [ 42%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestInputUnchanged::test_input_unchanged_apply_PBC_atomgroup[serial-box0] PASSED [ 42%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestInputUnchanged::test_input_unchanged_apply_PBC_atomgroup[serial-box1] PASSED [ 42%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestInputUnchanged::test_input_unchanged_apply_PBC_atomgroup[openmp-box0] PASSED [ 43%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestInputUnchanged::test_input_unchanged_apply_PBC_atomgroup[openmp-box1] PASSED [ 43%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestEmptyInputCoordinates::test_empty_input_distance_array[serial-box0] PASSED [ 43%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestEmptyInputCoordinates::test_empty_input_distance_array[serial-box1] PASSED [ 43%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestEmptyInputCoordinates::test_empty_input_distance_array[serial-None] PASSED [ 43%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestEmptyInputCoordinates::test_empty_input_distance_array[openmp-box0] PASSED [ 43%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestEmptyInputCoordinates::test_empty_input_distance_array[openmp-box1] PASSED [ 43%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestEmptyInputCoordinates::test_empty_input_distance_array[openmp-None] PASSED [ 43%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestEmptyInputCoordinates::test_empty_input_self_distance_array[serial-box0] PASSED [ 43%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestEmptyInputCoordinates::test_empty_input_self_distance_array[serial-box1] PASSED [ 43%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestEmptyInputCoordinates::test_empty_input_self_distance_array[serial-None] PASSED [ 43%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestEmptyInputCoordinates::test_empty_input_self_distance_array[openmp-box0] PASSED [ 43%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestEmptyInputCoordinates::test_empty_input_self_distance_array[openmp-box1] PASSED [ 43%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestEmptyInputCoordinates::test_empty_input_self_distance_array[openmp-None] PASSED [ 43%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestEmptyInputCoordinates::test_empty_input_capped_distance[bruteforce-False-0.0-box0] PASSED [ 43%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestEmptyInputCoordinates::test_empty_input_capped_distance[bruteforce-False-0.0-box1] PASSED [ 43%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestEmptyInputCoordinates::test_empty_input_capped_distance[bruteforce-False-0.0-None] PASSED [ 43%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestEmptyInputCoordinates::test_empty_input_capped_distance[bruteforce-False-None-box0] PASSED [ 43%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestEmptyInputCoordinates::test_empty_input_capped_distance[bruteforce-False-None-box1] PASSED [ 43%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestEmptyInputCoordinates::test_empty_input_capped_distance[bruteforce-False-None-None] PASSED [ 43%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestEmptyInputCoordinates::test_empty_input_capped_distance[bruteforce-True-0.0-box0] PASSED [ 43%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestEmptyInputCoordinates::test_empty_input_capped_distance[bruteforce-True-0.0-box1] PASSED [ 43%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestEmptyInputCoordinates::test_empty_input_capped_distance[bruteforce-True-0.0-None] PASSED [ 43%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestEmptyInputCoordinates::test_empty_input_capped_distance[bruteforce-True-None-box0] PASSED [ 43%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestEmptyInputCoordinates::test_empty_input_capped_distance[bruteforce-True-None-box1] PASSED [ 43%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestEmptyInputCoordinates::test_empty_input_capped_distance[bruteforce-True-None-None] PASSED [ 43%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestEmptyInputCoordinates::test_empty_input_capped_distance[pkdtree-False-0.0-box0] PASSED [ 43%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestEmptyInputCoordinates::test_empty_input_capped_distance[pkdtree-False-0.0-box1] PASSED [ 43%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestEmptyInputCoordinates::test_empty_input_capped_distance[pkdtree-False-0.0-None] PASSED [ 43%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestEmptyInputCoordinates::test_empty_input_capped_distance[pkdtree-False-None-box0] PASSED [ 43%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestEmptyInputCoordinates::test_empty_input_capped_distance[pkdtree-False-None-box1] PASSED [ 43%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestEmptyInputCoordinates::test_empty_input_capped_distance[pkdtree-False-None-None] PASSED [ 43%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestEmptyInputCoordinates::test_empty_input_capped_distance[pkdtree-True-0.0-box0] PASSED [ 43%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestEmptyInputCoordinates::test_empty_input_capped_distance[pkdtree-True-0.0-box1] PASSED [ 43%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestEmptyInputCoordinates::test_empty_input_capped_distance[pkdtree-True-0.0-None] PASSED [ 43%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestEmptyInputCoordinates::test_empty_input_capped_distance[pkdtree-True-None-box0] PASSED [ 43%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestEmptyInputCoordinates::test_empty_input_capped_distance[pkdtree-True-None-box1] PASSED [ 43%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestEmptyInputCoordinates::test_empty_input_capped_distance[pkdtree-True-None-None] PASSED [ 43%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestEmptyInputCoordinates::test_empty_input_capped_distance[nsgrid-False-0.0-box0] PASSED [ 43%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestEmptyInputCoordinates::test_empty_input_capped_distance[nsgrid-False-0.0-box1] PASSED [ 43%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestEmptyInputCoordinates::test_empty_input_capped_distance[nsgrid-False-0.0-None] PASSED [ 43%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestEmptyInputCoordinates::test_empty_input_capped_distance[nsgrid-False-None-box0] PASSED [ 43%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestEmptyInputCoordinates::test_empty_input_capped_distance[nsgrid-False-None-box1] PASSED [ 43%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestEmptyInputCoordinates::test_empty_input_capped_distance[nsgrid-False-None-None] PASSED [ 43%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestEmptyInputCoordinates::test_empty_input_capped_distance[nsgrid-True-0.0-box0] PASSED [ 43%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestEmptyInputCoordinates::test_empty_input_capped_distance[nsgrid-True-0.0-box1] PASSED [ 43%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestEmptyInputCoordinates::test_empty_input_capped_distance[nsgrid-True-0.0-None] PASSED [ 43%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestEmptyInputCoordinates::test_empty_input_capped_distance[nsgrid-True-None-box0] PASSED [ 43%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestEmptyInputCoordinates::test_empty_input_capped_distance[nsgrid-True-None-box1] PASSED [ 43%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestEmptyInputCoordinates::test_empty_input_capped_distance[nsgrid-True-None-None] PASSED [ 43%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestEmptyInputCoordinates::test_empty_input_capped_distance[None-False-0.0-box0] PASSED [ 43%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestEmptyInputCoordinates::test_empty_input_capped_distance[None-False-0.0-box1] PASSED [ 43%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestEmptyInputCoordinates::test_empty_input_capped_distance[None-False-0.0-None] PASSED [ 43%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestEmptyInputCoordinates::test_empty_input_capped_distance[None-False-None-box0] PASSED [ 43%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestEmptyInputCoordinates::test_empty_input_capped_distance[None-False-None-box1] PASSED [ 43%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestEmptyInputCoordinates::test_empty_input_capped_distance[None-False-None-None] PASSED [ 43%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestEmptyInputCoordinates::test_empty_input_capped_distance[None-True-0.0-box0] PASSED [ 43%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestEmptyInputCoordinates::test_empty_input_capped_distance[None-True-0.0-box1] PASSED [ 43%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestEmptyInputCoordinates::test_empty_input_capped_distance[None-True-0.0-None] PASSED [ 43%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestEmptyInputCoordinates::test_empty_input_capped_distance[None-True-None-box0] PASSED [ 43%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestEmptyInputCoordinates::test_empty_input_capped_distance[None-True-None-box1] PASSED [ 43%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestEmptyInputCoordinates::test_empty_input_capped_distance[None-True-None-None] PASSED [ 43%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestEmptyInputCoordinates::test_empty_input_self_capped_distance[bruteforce-False-0.0-box0] PASSED [ 43%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestEmptyInputCoordinates::test_empty_input_self_capped_distance[bruteforce-False-0.0-box1] PASSED [ 43%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestEmptyInputCoordinates::test_empty_input_self_capped_distance[bruteforce-False-0.0-None] PASSED [ 43%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestEmptyInputCoordinates::test_empty_input_self_capped_distance[bruteforce-False-None-box0] PASSED [ 43%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestEmptyInputCoordinates::test_empty_input_self_capped_distance[bruteforce-False-None-box1] PASSED [ 43%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestEmptyInputCoordinates::test_empty_input_self_capped_distance[bruteforce-False-None-None] PASSED [ 43%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestEmptyInputCoordinates::test_empty_input_self_capped_distance[bruteforce-True-0.0-box0] PASSED [ 43%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestEmptyInputCoordinates::test_empty_input_self_capped_distance[bruteforce-True-0.0-box1] PASSED [ 43%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestEmptyInputCoordinates::test_empty_input_self_capped_distance[bruteforce-True-0.0-None] PASSED [ 43%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestEmptyInputCoordinates::test_empty_input_self_capped_distance[bruteforce-True-None-box0] PASSED [ 43%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestEmptyInputCoordinates::test_empty_input_self_capped_distance[bruteforce-True-None-box1] PASSED [ 43%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestEmptyInputCoordinates::test_empty_input_self_capped_distance[bruteforce-True-None-None] PASSED [ 43%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestEmptyInputCoordinates::test_empty_input_self_capped_distance[pkdtree-False-0.0-box0] PASSED [ 43%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestEmptyInputCoordinates::test_empty_input_self_capped_distance[pkdtree-False-0.0-box1] PASSED [ 43%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestEmptyInputCoordinates::test_empty_input_self_capped_distance[pkdtree-False-0.0-None] PASSED [ 43%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestEmptyInputCoordinates::test_empty_input_self_capped_distance[pkdtree-False-None-box0] PASSED [ 43%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestEmptyInputCoordinates::test_empty_input_self_capped_distance[pkdtree-False-None-box1] PASSED [ 43%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestEmptyInputCoordinates::test_empty_input_self_capped_distance[pkdtree-False-None-None] PASSED [ 43%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestEmptyInputCoordinates::test_empty_input_self_capped_distance[pkdtree-True-0.0-box0] PASSED [ 43%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestEmptyInputCoordinates::test_empty_input_self_capped_distance[pkdtree-True-0.0-box1] PASSED [ 43%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestEmptyInputCoordinates::test_empty_input_self_capped_distance[pkdtree-True-0.0-None] PASSED [ 43%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestEmptyInputCoordinates::test_empty_input_self_capped_distance[pkdtree-True-None-box0] PASSED [ 43%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestEmptyInputCoordinates::test_empty_input_self_capped_distance[pkdtree-True-None-box1] PASSED [ 43%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestEmptyInputCoordinates::test_empty_input_self_capped_distance[pkdtree-True-None-None] PASSED [ 43%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestEmptyInputCoordinates::test_empty_input_self_capped_distance[nsgrid-False-0.0-box0] PASSED [ 43%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestEmptyInputCoordinates::test_empty_input_self_capped_distance[nsgrid-False-0.0-box1] PASSED [ 43%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestEmptyInputCoordinates::test_empty_input_self_capped_distance[nsgrid-False-0.0-None] PASSED [ 43%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestEmptyInputCoordinates::test_empty_input_self_capped_distance[nsgrid-False-None-box0] PASSED [ 43%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestEmptyInputCoordinates::test_empty_input_self_capped_distance[nsgrid-False-None-box1] PASSED [ 43%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestEmptyInputCoordinates::test_empty_input_self_capped_distance[nsgrid-False-None-None] PASSED [ 43%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestEmptyInputCoordinates::test_empty_input_self_capped_distance[nsgrid-True-0.0-box0] PASSED [ 43%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestEmptyInputCoordinates::test_empty_input_self_capped_distance[nsgrid-True-0.0-box1] PASSED [ 43%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestEmptyInputCoordinates::test_empty_input_self_capped_distance[nsgrid-True-0.0-None] PASSED [ 43%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestEmptyInputCoordinates::test_empty_input_self_capped_distance[nsgrid-True-None-box0] PASSED [ 43%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestEmptyInputCoordinates::test_empty_input_self_capped_distance[nsgrid-True-None-box1] PASSED [ 43%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestEmptyInputCoordinates::test_empty_input_self_capped_distance[nsgrid-True-None-None] PASSED [ 43%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestEmptyInputCoordinates::test_empty_input_self_capped_distance[None-False-0.0-box0] PASSED [ 43%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestEmptyInputCoordinates::test_empty_input_self_capped_distance[None-False-0.0-box1] PASSED [ 43%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestEmptyInputCoordinates::test_empty_input_self_capped_distance[None-False-0.0-None] PASSED [ 43%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestEmptyInputCoordinates::test_empty_input_self_capped_distance[None-False-None-box0] PASSED [ 43%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestEmptyInputCoordinates::test_empty_input_self_capped_distance[None-False-None-box1] PASSED [ 43%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestEmptyInputCoordinates::test_empty_input_self_capped_distance[None-False-None-None] PASSED [ 43%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestEmptyInputCoordinates::test_empty_input_self_capped_distance[None-True-0.0-box0] PASSED [ 43%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestEmptyInputCoordinates::test_empty_input_self_capped_distance[None-True-0.0-box1] PASSED [ 43%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestEmptyInputCoordinates::test_empty_input_self_capped_distance[None-True-0.0-None] PASSED [ 43%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestEmptyInputCoordinates::test_empty_input_self_capped_distance[None-True-None-box0] PASSED [ 43%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestEmptyInputCoordinates::test_empty_input_self_capped_distance[None-True-None-box1] PASSED [ 43%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestEmptyInputCoordinates::test_empty_input_self_capped_distance[None-True-None-None] PASSED [ 43%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestEmptyInputCoordinates::test_empty_input_transform_RtoS[serial-box0] PASSED [ 43%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestEmptyInputCoordinates::test_empty_input_transform_RtoS[serial-box1] PASSED [ 43%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestEmptyInputCoordinates::test_empty_input_transform_RtoS[openmp-box0] PASSED [ 43%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestEmptyInputCoordinates::test_empty_input_transform_RtoS[openmp-box1] PASSED [ 43%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestEmptyInputCoordinates::test_empty_input_transform_StoR[serial-box0] PASSED [ 43%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestEmptyInputCoordinates::test_empty_input_transform_StoR[serial-box1] PASSED [ 43%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestEmptyInputCoordinates::test_empty_input_transform_StoR[openmp-box0] PASSED [ 43%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestEmptyInputCoordinates::test_empty_input_transform_StoR[openmp-box1] PASSED [ 43%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestEmptyInputCoordinates::test_empty_input_calc_bonds[serial-box0] PASSED [ 43%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestEmptyInputCoordinates::test_empty_input_calc_bonds[serial-box1] PASSED [ 43%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestEmptyInputCoordinates::test_empty_input_calc_bonds[serial-None] PASSED [ 43%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestEmptyInputCoordinates::test_empty_input_calc_bonds[openmp-box0] PASSED [ 43%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestEmptyInputCoordinates::test_empty_input_calc_bonds[openmp-box1] PASSED [ 43%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestEmptyInputCoordinates::test_empty_input_calc_bonds[openmp-None] PASSED [ 43%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestEmptyInputCoordinates::test_empty_input_calc_angles[serial-box0] PASSED [ 43%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestEmptyInputCoordinates::test_empty_input_calc_angles[serial-box1] PASSED [ 43%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestEmptyInputCoordinates::test_empty_input_calc_angles[serial-None] PASSED [ 43%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestEmptyInputCoordinates::test_empty_input_calc_angles[openmp-box0] PASSED [ 43%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestEmptyInputCoordinates::test_empty_input_calc_angles[openmp-box1] PASSED [ 43%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestEmptyInputCoordinates::test_empty_input_calc_angles[openmp-None] PASSED [ 43%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestEmptyInputCoordinates::test_empty_input_calc_dihedrals[serial-box0] PASSED [ 43%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestEmptyInputCoordinates::test_empty_input_calc_dihedrals[serial-box1] PASSED [ 43%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestEmptyInputCoordinates::test_empty_input_calc_dihedrals[serial-None] PASSED [ 43%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestEmptyInputCoordinates::test_empty_input_calc_dihedrals[openmp-box0] PASSED [ 43%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestEmptyInputCoordinates::test_empty_input_calc_dihedrals[openmp-box1] PASSED [ 43%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestEmptyInputCoordinates::test_empty_input_calc_dihedrals[openmp-None] PASSED [ 43%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestEmptyInputCoordinates::test_empty_input_apply_PBC[serial-box0] PASSED [ 43%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestEmptyInputCoordinates::test_empty_input_apply_PBC[serial-box1] PASSED [ 43%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestEmptyInputCoordinates::test_empty_input_apply_PBC[openmp-box0] PASSED [ 43%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestEmptyInputCoordinates::test_empty_input_apply_PBC[openmp-box1] PASSED [ 43%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_distance_array[serial-incoords0-box0] PASSED [ 43%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_distance_array[serial-incoords0-box1] PASSED [ 43%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_distance_array[serial-incoords0-None] PASSED [ 43%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_distance_array[serial-incoords1-box0] PASSED [ 43%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_distance_array[serial-incoords1-box1] PASSED [ 43%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_distance_array[serial-incoords1-None] PASSED [ 43%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_distance_array[serial-incoords2-box0] PASSED [ 43%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_distance_array[serial-incoords2-box1] PASSED [ 43%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_distance_array[serial-incoords2-None] PASSED [ 43%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_distance_array[serial-incoords3-box0] PASSED [ 43%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_distance_array[serial-incoords3-box1] PASSED [ 43%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_distance_array[serial-incoords3-None] PASSED [ 43%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_distance_array[serial-incoords4-box0] PASSED [ 43%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_distance_array[serial-incoords4-box1] PASSED [ 43%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_distance_array[serial-incoords4-None] PASSED [ 43%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_distance_array[serial-incoords5-box0] PASSED [ 43%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_distance_array[serial-incoords5-box1] PASSED [ 43%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_distance_array[serial-incoords5-None] PASSED [ 43%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_distance_array[serial-incoords6-box0] PASSED [ 43%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_distance_array[serial-incoords6-box1] PASSED [ 43%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_distance_array[serial-incoords6-None] PASSED [ 43%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_distance_array[serial-incoords7-box0] PASSED [ 43%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_distance_array[serial-incoords7-box1] PASSED [ 43%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_distance_array[serial-incoords7-None] PASSED [ 43%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_distance_array[serial-incoords8-box0] PASSED [ 43%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_distance_array[serial-incoords8-box1] PASSED [ 43%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_distance_array[serial-incoords8-None] PASSED [ 43%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_distance_array[serial-incoords9-box0] PASSED [ 43%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_distance_array[serial-incoords9-box1] PASSED [ 43%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_distance_array[serial-incoords9-None] PASSED [ 43%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_distance_array[openmp-incoords0-box0] PASSED [ 43%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_distance_array[openmp-incoords0-box1] PASSED [ 43%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_distance_array[openmp-incoords0-None] PASSED [ 43%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_distance_array[openmp-incoords1-box0] PASSED [ 43%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_distance_array[openmp-incoords1-box1] PASSED [ 43%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_distance_array[openmp-incoords1-None] PASSED [ 43%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_distance_array[openmp-incoords2-box0] PASSED [ 43%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_distance_array[openmp-incoords2-box1] PASSED [ 43%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_distance_array[openmp-incoords2-None] PASSED [ 43%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_distance_array[openmp-incoords3-box0] PASSED [ 43%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_distance_array[openmp-incoords3-box1] PASSED [ 43%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_distance_array[openmp-incoords3-None] PASSED [ 43%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_distance_array[openmp-incoords4-box0] PASSED [ 43%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_distance_array[openmp-incoords4-box1] PASSED [ 43%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_distance_array[openmp-incoords4-None] PASSED [ 44%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_distance_array[openmp-incoords5-box0] PASSED [ 44%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_distance_array[openmp-incoords5-box1] PASSED [ 44%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_distance_array[openmp-incoords5-None] PASSED [ 44%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_distance_array[openmp-incoords6-box0] PASSED [ 44%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_distance_array[openmp-incoords6-box1] PASSED [ 44%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_distance_array[openmp-incoords6-None] PASSED [ 44%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_distance_array[openmp-incoords7-box0] PASSED [ 44%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_distance_array[openmp-incoords7-box1] PASSED [ 44%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_distance_array[openmp-incoords7-None] PASSED [ 44%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_distance_array[openmp-incoords8-box0] PASSED [ 44%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_distance_array[openmp-incoords8-box1] PASSED [ 44%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_distance_array[openmp-incoords8-None] PASSED [ 44%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_distance_array[openmp-incoords9-box0] PASSED [ 44%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_distance_array[openmp-incoords9-box1] PASSED [ 44%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_distance_array[openmp-incoords9-None] PASSED [ 44%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_self_distance_array[serial-incoords0-box0] PASSED [ 44%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_self_distance_array[serial-incoords0-box1] PASSED [ 44%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_self_distance_array[serial-incoords0-None] PASSED [ 44%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_self_distance_array[serial-incoords1-box0] PASSED [ 44%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_self_distance_array[serial-incoords1-box1] PASSED [ 44%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_self_distance_array[serial-incoords1-None] PASSED [ 44%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_self_distance_array[serial-incoords2-box0] PASSED [ 44%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_self_distance_array[serial-incoords2-box1] PASSED [ 44%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_self_distance_array[serial-incoords2-None] PASSED [ 44%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_self_distance_array[serial-incoords3-box0] PASSED [ 44%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_self_distance_array[serial-incoords3-box1] PASSED [ 44%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_self_distance_array[serial-incoords3-None] PASSED [ 44%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_self_distance_array[openmp-incoords0-box0] PASSED [ 44%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_self_distance_array[openmp-incoords0-box1] PASSED [ 44%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_self_distance_array[openmp-incoords0-None] PASSED [ 44%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_self_distance_array[openmp-incoords1-box0] PASSED [ 44%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_self_distance_array[openmp-incoords1-box1] PASSED [ 44%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_self_distance_array[openmp-incoords1-None] PASSED [ 44%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_self_distance_array[openmp-incoords2-box0] PASSED [ 44%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_self_distance_array[openmp-incoords2-box1] PASSED [ 44%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_self_distance_array[openmp-incoords2-None] PASSED [ 44%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_self_distance_array[openmp-incoords3-box0] PASSED [ 44%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_self_distance_array[openmp-incoords3-box1] PASSED [ 44%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_self_distance_array[openmp-incoords3-None] PASSED [ 44%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[bruteforce-incoords0-False-0.0-box0] PASSED [ 44%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[bruteforce-incoords0-False-0.0-box1] PASSED [ 44%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[bruteforce-incoords0-False-0.0-None] PASSED [ 44%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[bruteforce-incoords0-False-None-box0] PASSED [ 44%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[bruteforce-incoords0-False-None-box1] PASSED [ 44%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[bruteforce-incoords0-False-None-None] PASSED [ 44%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[bruteforce-incoords0-True-0.0-box0] PASSED [ 44%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[bruteforce-incoords0-True-0.0-box1] PASSED [ 44%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[bruteforce-incoords0-True-0.0-None] PASSED [ 44%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[bruteforce-incoords0-True-None-box0] PASSED [ 44%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[bruteforce-incoords0-True-None-box1] PASSED [ 44%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[bruteforce-incoords0-True-None-None] PASSED [ 44%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[bruteforce-incoords1-False-0.0-box0] PASSED [ 44%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[bruteforce-incoords1-False-0.0-box1] PASSED [ 44%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[bruteforce-incoords1-False-0.0-None] PASSED [ 44%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[bruteforce-incoords1-False-None-box0] PASSED [ 44%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[bruteforce-incoords1-False-None-box1] PASSED [ 44%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[bruteforce-incoords1-False-None-None] PASSED [ 44%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[bruteforce-incoords1-True-0.0-box0] PASSED [ 44%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[bruteforce-incoords1-True-0.0-box1] PASSED [ 44%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[bruteforce-incoords1-True-0.0-None] PASSED [ 44%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[bruteforce-incoords1-True-None-box0] PASSED [ 44%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[bruteforce-incoords1-True-None-box1] PASSED [ 44%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[bruteforce-incoords1-True-None-None] PASSED [ 44%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[bruteforce-incoords2-False-0.0-box0] PASSED [ 44%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[bruteforce-incoords2-False-0.0-box1] PASSED [ 44%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[bruteforce-incoords2-False-0.0-None] PASSED [ 44%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[bruteforce-incoords2-False-None-box0] PASSED [ 44%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[bruteforce-incoords2-False-None-box1] PASSED [ 44%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[bruteforce-incoords2-False-None-None] PASSED [ 44%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[bruteforce-incoords2-True-0.0-box0] PASSED [ 44%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[bruteforce-incoords2-True-0.0-box1] PASSED [ 44%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[bruteforce-incoords2-True-0.0-None] PASSED [ 44%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[bruteforce-incoords2-True-None-box0] PASSED [ 44%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[bruteforce-incoords2-True-None-box1] PASSED [ 44%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[bruteforce-incoords2-True-None-None] PASSED [ 44%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[bruteforce-incoords3-False-0.0-box0] PASSED [ 44%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[bruteforce-incoords3-False-0.0-box1] PASSED [ 44%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[bruteforce-incoords3-False-0.0-None] PASSED [ 44%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[bruteforce-incoords3-False-None-box0] PASSED [ 44%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[bruteforce-incoords3-False-None-box1] PASSED [ 44%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[bruteforce-incoords3-False-None-None] PASSED [ 44%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[bruteforce-incoords3-True-0.0-box0] PASSED [ 44%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[bruteforce-incoords3-True-0.0-box1] PASSED [ 44%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[bruteforce-incoords3-True-0.0-None] PASSED [ 44%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[bruteforce-incoords3-True-None-box0] PASSED [ 44%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[bruteforce-incoords3-True-None-box1] PASSED [ 44%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[bruteforce-incoords3-True-None-None] PASSED [ 44%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[bruteforce-incoords4-False-0.0-box0] PASSED [ 44%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[bruteforce-incoords4-False-0.0-box1] PASSED [ 44%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[bruteforce-incoords4-False-0.0-None] PASSED [ 44%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[bruteforce-incoords4-False-None-box0] PASSED [ 44%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[bruteforce-incoords4-False-None-box1] PASSED [ 44%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[bruteforce-incoords4-False-None-None] PASSED [ 44%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[bruteforce-incoords4-True-0.0-box0] PASSED [ 44%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[bruteforce-incoords4-True-0.0-box1] PASSED [ 44%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[bruteforce-incoords4-True-0.0-None] PASSED [ 44%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[bruteforce-incoords4-True-None-box0] PASSED [ 44%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[bruteforce-incoords4-True-None-box1] PASSED [ 44%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[bruteforce-incoords4-True-None-None] PASSED [ 44%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[bruteforce-incoords5-False-0.0-box0] PASSED [ 44%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[bruteforce-incoords5-False-0.0-box1] PASSED [ 44%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[bruteforce-incoords5-False-0.0-None] PASSED [ 44%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[bruteforce-incoords5-False-None-box0] PASSED [ 44%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[bruteforce-incoords5-False-None-box1] PASSED [ 44%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[bruteforce-incoords5-False-None-None] PASSED [ 44%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[bruteforce-incoords5-True-0.0-box0] PASSED [ 44%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[bruteforce-incoords5-True-0.0-box1] PASSED [ 44%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[bruteforce-incoords5-True-0.0-None] PASSED [ 44%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[bruteforce-incoords5-True-None-box0] PASSED [ 44%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[bruteforce-incoords5-True-None-box1] PASSED [ 44%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[bruteforce-incoords5-True-None-None] PASSED [ 44%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[bruteforce-incoords6-False-0.0-box0] PASSED [ 44%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[bruteforce-incoords6-False-0.0-box1] PASSED [ 44%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[bruteforce-incoords6-False-0.0-None] PASSED [ 44%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[bruteforce-incoords6-False-None-box0] PASSED [ 44%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[bruteforce-incoords6-False-None-box1] PASSED [ 44%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[bruteforce-incoords6-False-None-None] PASSED [ 44%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[bruteforce-incoords6-True-0.0-box0] PASSED [ 44%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[bruteforce-incoords6-True-0.0-box1] PASSED [ 44%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[bruteforce-incoords6-True-0.0-None] PASSED [ 44%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[bruteforce-incoords6-True-None-box0] PASSED [ 44%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[bruteforce-incoords6-True-None-box1] PASSED [ 44%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[bruteforce-incoords6-True-None-None] PASSED [ 44%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[bruteforce-incoords7-False-0.0-box0] PASSED [ 44%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[bruteforce-incoords7-False-0.0-box1] PASSED [ 44%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[bruteforce-incoords7-False-0.0-None] PASSED [ 44%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[bruteforce-incoords7-False-None-box0] PASSED [ 44%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[bruteforce-incoords7-False-None-box1] PASSED [ 44%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[bruteforce-incoords7-False-None-None] PASSED [ 44%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[bruteforce-incoords7-True-0.0-box0] PASSED [ 44%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[bruteforce-incoords7-True-0.0-box1] PASSED [ 44%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[bruteforce-incoords7-True-0.0-None] PASSED [ 44%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[bruteforce-incoords7-True-None-box0] PASSED [ 44%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[bruteforce-incoords7-True-None-box1] PASSED [ 44%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[bruteforce-incoords7-True-None-None] PASSED [ 44%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[bruteforce-incoords8-False-0.0-box0] PASSED [ 44%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[bruteforce-incoords8-False-0.0-box1] PASSED [ 44%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[bruteforce-incoords8-False-0.0-None] PASSED [ 44%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[bruteforce-incoords8-False-None-box0] PASSED [ 44%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[bruteforce-incoords8-False-None-box1] PASSED [ 44%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[bruteforce-incoords8-False-None-None] PASSED [ 44%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[bruteforce-incoords8-True-0.0-box0] PASSED [ 44%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[bruteforce-incoords8-True-0.0-box1] PASSED [ 44%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[bruteforce-incoords8-True-0.0-None] PASSED [ 44%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[bruteforce-incoords8-True-None-box0] PASSED [ 44%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[bruteforce-incoords8-True-None-box1] PASSED [ 44%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[bruteforce-incoords8-True-None-None] PASSED [ 44%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[bruteforce-incoords9-False-0.0-box0] PASSED [ 44%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[bruteforce-incoords9-False-0.0-box1] PASSED [ 44%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[bruteforce-incoords9-False-0.0-None] PASSED [ 44%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[bruteforce-incoords9-False-None-box0] PASSED [ 44%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[bruteforce-incoords9-False-None-box1] PASSED [ 44%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[bruteforce-incoords9-False-None-None] PASSED [ 44%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[bruteforce-incoords9-True-0.0-box0] PASSED [ 44%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[bruteforce-incoords9-True-0.0-box1] PASSED [ 44%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[bruteforce-incoords9-True-0.0-None] PASSED [ 44%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[bruteforce-incoords9-True-None-box0] PASSED [ 44%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[bruteforce-incoords9-True-None-box1] PASSED [ 44%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[bruteforce-incoords9-True-None-None] PASSED [ 44%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[pkdtree-incoords0-False-0.0-box0] PASSED [ 44%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[pkdtree-incoords0-False-0.0-box1] PASSED [ 44%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[pkdtree-incoords0-False-0.0-None] PASSED [ 44%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[pkdtree-incoords0-False-None-box0] PASSED [ 44%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[pkdtree-incoords0-False-None-box1] PASSED [ 44%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[pkdtree-incoords0-False-None-None] PASSED [ 44%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[pkdtree-incoords0-True-0.0-box0] PASSED [ 44%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[pkdtree-incoords0-True-0.0-box1] PASSED [ 44%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[pkdtree-incoords0-True-0.0-None] PASSED [ 44%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[pkdtree-incoords0-True-None-box0] PASSED [ 44%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[pkdtree-incoords0-True-None-box1] PASSED [ 44%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[pkdtree-incoords0-True-None-None] PASSED [ 44%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[pkdtree-incoords1-False-0.0-box0] PASSED [ 44%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[pkdtree-incoords1-False-0.0-box1] PASSED [ 44%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[pkdtree-incoords1-False-0.0-None] PASSED [ 44%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[pkdtree-incoords1-False-None-box0] PASSED [ 44%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[pkdtree-incoords1-False-None-box1] PASSED [ 44%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[pkdtree-incoords1-False-None-None] PASSED [ 44%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[pkdtree-incoords1-True-0.0-box0] PASSED [ 44%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[pkdtree-incoords1-True-0.0-box1] PASSED [ 44%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[pkdtree-incoords1-True-0.0-None] PASSED [ 44%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[pkdtree-incoords1-True-None-box0] PASSED [ 44%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[pkdtree-incoords1-True-None-box1] PASSED [ 44%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[pkdtree-incoords1-True-None-None] PASSED [ 44%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[pkdtree-incoords2-False-0.0-box0] PASSED [ 44%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[pkdtree-incoords2-False-0.0-box1] PASSED [ 45%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[pkdtree-incoords2-False-0.0-None] PASSED [ 45%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[pkdtree-incoords2-False-None-box0] PASSED [ 45%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[pkdtree-incoords2-False-None-box1] PASSED [ 45%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[pkdtree-incoords2-False-None-None] PASSED [ 45%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[pkdtree-incoords2-True-0.0-box0] PASSED [ 45%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[pkdtree-incoords2-True-0.0-box1] PASSED [ 45%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[pkdtree-incoords2-True-0.0-None] PASSED [ 45%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[pkdtree-incoords2-True-None-box0] PASSED [ 45%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[pkdtree-incoords2-True-None-box1] PASSED [ 45%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[pkdtree-incoords2-True-None-None] PASSED [ 45%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[pkdtree-incoords3-False-0.0-box0] PASSED [ 45%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[pkdtree-incoords3-False-0.0-box1] PASSED [ 45%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[pkdtree-incoords3-False-0.0-None] PASSED [ 45%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[pkdtree-incoords3-False-None-box0] PASSED [ 45%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[pkdtree-incoords3-False-None-box1] PASSED [ 45%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[pkdtree-incoords3-False-None-None] PASSED [ 45%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[pkdtree-incoords3-True-0.0-box0] PASSED [ 45%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[pkdtree-incoords3-True-0.0-box1] PASSED [ 45%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[pkdtree-incoords3-True-0.0-None] PASSED [ 45%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[pkdtree-incoords3-True-None-box0] PASSED [ 45%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[pkdtree-incoords3-True-None-box1] PASSED [ 45%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[pkdtree-incoords3-True-None-None] PASSED [ 45%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[pkdtree-incoords4-False-0.0-box0] PASSED [ 45%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[pkdtree-incoords4-False-0.0-box1] PASSED [ 45%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[pkdtree-incoords4-False-0.0-None] PASSED [ 45%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[pkdtree-incoords4-False-None-box0] PASSED [ 45%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[pkdtree-incoords4-False-None-box1] PASSED [ 45%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[pkdtree-incoords4-False-None-None] PASSED [ 45%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[pkdtree-incoords4-True-0.0-box0] PASSED [ 45%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[pkdtree-incoords4-True-0.0-box1] PASSED [ 45%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[pkdtree-incoords4-True-0.0-None] PASSED [ 45%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[pkdtree-incoords4-True-None-box0] PASSED [ 45%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[pkdtree-incoords4-True-None-box1] PASSED [ 45%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[pkdtree-incoords4-True-None-None] PASSED [ 45%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[pkdtree-incoords5-False-0.0-box0] PASSED [ 45%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[pkdtree-incoords5-False-0.0-box1] PASSED [ 45%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[pkdtree-incoords5-False-0.0-None] PASSED [ 45%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[pkdtree-incoords5-False-None-box0] PASSED [ 45%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[pkdtree-incoords5-False-None-box1] PASSED [ 45%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[pkdtree-incoords5-False-None-None] PASSED [ 45%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[pkdtree-incoords5-True-0.0-box0] PASSED [ 45%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[pkdtree-incoords5-True-0.0-box1] PASSED [ 45%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[pkdtree-incoords5-True-0.0-None] PASSED [ 45%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[pkdtree-incoords5-True-None-box0] PASSED [ 45%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[pkdtree-incoords5-True-None-box1] PASSED [ 45%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[pkdtree-incoords5-True-None-None] PASSED [ 45%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[pkdtree-incoords6-False-0.0-box0] PASSED [ 45%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[pkdtree-incoords6-False-0.0-box1] PASSED [ 45%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[pkdtree-incoords6-False-0.0-None] PASSED [ 45%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[pkdtree-incoords6-False-None-box0] PASSED [ 45%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[pkdtree-incoords6-False-None-box1] PASSED [ 45%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[pkdtree-incoords6-False-None-None] PASSED [ 45%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[pkdtree-incoords6-True-0.0-box0] PASSED [ 45%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[pkdtree-incoords6-True-0.0-box1] PASSED [ 45%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[pkdtree-incoords6-True-0.0-None] PASSED [ 45%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[pkdtree-incoords6-True-None-box0] PASSED [ 45%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[pkdtree-incoords6-True-None-box1] PASSED [ 45%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[pkdtree-incoords6-True-None-None] PASSED [ 45%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[pkdtree-incoords7-False-0.0-box0] PASSED [ 45%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[pkdtree-incoords7-False-0.0-box1] PASSED [ 45%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[pkdtree-incoords7-False-0.0-None] PASSED [ 45%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[pkdtree-incoords7-False-None-box0] PASSED [ 45%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[pkdtree-incoords7-False-None-box1] PASSED [ 45%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[pkdtree-incoords7-False-None-None] PASSED [ 45%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[pkdtree-incoords7-True-0.0-box0] PASSED [ 45%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[pkdtree-incoords7-True-0.0-box1] PASSED [ 45%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[pkdtree-incoords7-True-0.0-None] PASSED [ 45%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[pkdtree-incoords7-True-None-box0] PASSED [ 45%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[pkdtree-incoords7-True-None-box1] PASSED [ 45%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[pkdtree-incoords7-True-None-None] PASSED [ 45%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[pkdtree-incoords8-False-0.0-box0] PASSED [ 45%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[pkdtree-incoords8-False-0.0-box1] PASSED [ 45%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[pkdtree-incoords8-False-0.0-None] PASSED [ 45%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[pkdtree-incoords8-False-None-box0] PASSED [ 45%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[pkdtree-incoords8-False-None-box1] PASSED [ 45%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[pkdtree-incoords8-False-None-None] PASSED [ 45%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[pkdtree-incoords8-True-0.0-box0] PASSED [ 45%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[pkdtree-incoords8-True-0.0-box1] PASSED [ 45%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[pkdtree-incoords8-True-0.0-None] PASSED [ 45%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[pkdtree-incoords8-True-None-box0] PASSED [ 45%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[pkdtree-incoords8-True-None-box1] PASSED [ 45%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[pkdtree-incoords8-True-None-None] PASSED [ 45%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[pkdtree-incoords9-False-0.0-box0] PASSED [ 45%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[pkdtree-incoords9-False-0.0-box1] PASSED [ 45%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[pkdtree-incoords9-False-0.0-None] PASSED [ 45%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[pkdtree-incoords9-False-None-box0] PASSED [ 45%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[pkdtree-incoords9-False-None-box1] PASSED [ 45%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[pkdtree-incoords9-False-None-None] PASSED [ 45%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[pkdtree-incoords9-True-0.0-box0] PASSED [ 45%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[pkdtree-incoords9-True-0.0-box1] PASSED [ 45%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[pkdtree-incoords9-True-0.0-None] PASSED [ 45%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[pkdtree-incoords9-True-None-box0] PASSED [ 45%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[pkdtree-incoords9-True-None-box1] PASSED [ 45%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[pkdtree-incoords9-True-None-None] PASSED [ 45%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[nsgrid-incoords0-False-0.0-box0] PASSED [ 45%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[nsgrid-incoords0-False-0.0-box1] PASSED [ 45%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[nsgrid-incoords0-False-0.0-None] PASSED [ 45%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[nsgrid-incoords0-False-None-box0] PASSED [ 45%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[nsgrid-incoords0-False-None-box1] PASSED [ 45%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[nsgrid-incoords0-False-None-None] PASSED [ 45%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[nsgrid-incoords0-True-0.0-box0] PASSED [ 45%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[nsgrid-incoords0-True-0.0-box1] PASSED [ 45%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[nsgrid-incoords0-True-0.0-None] PASSED [ 45%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[nsgrid-incoords0-True-None-box0] PASSED [ 45%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[nsgrid-incoords0-True-None-box1] PASSED [ 45%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[nsgrid-incoords0-True-None-None] PASSED [ 45%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[nsgrid-incoords1-False-0.0-box0] PASSED [ 45%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[nsgrid-incoords1-False-0.0-box1] PASSED [ 45%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[nsgrid-incoords1-False-0.0-None] PASSED [ 45%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[nsgrid-incoords1-False-None-box0] PASSED [ 45%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[nsgrid-incoords1-False-None-box1] PASSED [ 45%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[nsgrid-incoords1-False-None-None] PASSED [ 45%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[nsgrid-incoords1-True-0.0-box0] PASSED [ 45%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[nsgrid-incoords1-True-0.0-box1] PASSED [ 45%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[nsgrid-incoords1-True-0.0-None] PASSED [ 45%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[nsgrid-incoords1-True-None-box0] PASSED [ 45%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[nsgrid-incoords1-True-None-box1] PASSED [ 45%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[nsgrid-incoords1-True-None-None] PASSED [ 45%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[nsgrid-incoords2-False-0.0-box0] PASSED [ 45%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[nsgrid-incoords2-False-0.0-box1] PASSED [ 45%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[nsgrid-incoords2-False-0.0-None] PASSED [ 45%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[nsgrid-incoords2-False-None-box0] PASSED [ 45%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[nsgrid-incoords2-False-None-box1] PASSED [ 45%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[nsgrid-incoords2-False-None-None] PASSED [ 45%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[nsgrid-incoords2-True-0.0-box0] PASSED [ 45%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[nsgrid-incoords2-True-0.0-box1] PASSED [ 45%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[nsgrid-incoords2-True-0.0-None] PASSED [ 45%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[nsgrid-incoords2-True-None-box0] PASSED [ 45%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[nsgrid-incoords2-True-None-box1] PASSED [ 45%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[nsgrid-incoords2-True-None-None] PASSED [ 45%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[nsgrid-incoords3-False-0.0-box0] PASSED [ 45%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[nsgrid-incoords3-False-0.0-box1] PASSED [ 45%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[nsgrid-incoords3-False-0.0-None] PASSED [ 45%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[nsgrid-incoords3-False-None-box0] PASSED [ 45%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[nsgrid-incoords3-False-None-box1] PASSED [ 45%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[nsgrid-incoords3-False-None-None] PASSED [ 45%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[nsgrid-incoords3-True-0.0-box0] PASSED [ 45%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[nsgrid-incoords3-True-0.0-box1] PASSED [ 45%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[nsgrid-incoords3-True-0.0-None] PASSED [ 45%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[nsgrid-incoords3-True-None-box0] PASSED [ 45%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[nsgrid-incoords3-True-None-box1] PASSED [ 45%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[nsgrid-incoords3-True-None-None] PASSED [ 45%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[nsgrid-incoords4-False-0.0-box0] PASSED [ 45%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[nsgrid-incoords4-False-0.0-box1] PASSED [ 45%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[nsgrid-incoords4-False-0.0-None] PASSED [ 45%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[nsgrid-incoords4-False-None-box0] PASSED [ 45%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[nsgrid-incoords4-False-None-box1] PASSED [ 45%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[nsgrid-incoords4-False-None-None] PASSED [ 45%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[nsgrid-incoords4-True-0.0-box0] PASSED [ 45%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[nsgrid-incoords4-True-0.0-box1] PASSED [ 45%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[nsgrid-incoords4-True-0.0-None] PASSED [ 45%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[nsgrid-incoords4-True-None-box0] PASSED [ 45%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[nsgrid-incoords4-True-None-box1] PASSED [ 45%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[nsgrid-incoords4-True-None-None] PASSED [ 45%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[nsgrid-incoords5-False-0.0-box0] PASSED [ 45%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[nsgrid-incoords5-False-0.0-box1] PASSED [ 45%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[nsgrid-incoords5-False-0.0-None] PASSED [ 45%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[nsgrid-incoords5-False-None-box0] PASSED [ 45%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[nsgrid-incoords5-False-None-box1] PASSED [ 45%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[nsgrid-incoords5-False-None-None] PASSED [ 45%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[nsgrid-incoords5-True-0.0-box0] PASSED [ 45%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[nsgrid-incoords5-True-0.0-box1] PASSED [ 45%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[nsgrid-incoords5-True-0.0-None] PASSED [ 45%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[nsgrid-incoords5-True-None-box0] PASSED [ 45%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[nsgrid-incoords5-True-None-box1] PASSED [ 45%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[nsgrid-incoords5-True-None-None] PASSED [ 45%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[nsgrid-incoords6-False-0.0-box0] PASSED [ 45%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[nsgrid-incoords6-False-0.0-box1] PASSED [ 45%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[nsgrid-incoords6-False-0.0-None] PASSED [ 45%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[nsgrid-incoords6-False-None-box0] PASSED [ 45%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[nsgrid-incoords6-False-None-box1] PASSED [ 45%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[nsgrid-incoords6-False-None-None] PASSED [ 45%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[nsgrid-incoords6-True-0.0-box0] PASSED [ 45%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[nsgrid-incoords6-True-0.0-box1] PASSED [ 45%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[nsgrid-incoords6-True-0.0-None] PASSED [ 45%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[nsgrid-incoords6-True-None-box0] PASSED [ 45%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[nsgrid-incoords6-True-None-box1] PASSED [ 45%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[nsgrid-incoords6-True-None-None] PASSED [ 45%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[nsgrid-incoords7-False-0.0-box0] PASSED [ 45%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[nsgrid-incoords7-False-0.0-box1] PASSED [ 45%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[nsgrid-incoords7-False-0.0-None] PASSED [ 45%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[nsgrid-incoords7-False-None-box0] PASSED [ 45%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[nsgrid-incoords7-False-None-box1] PASSED [ 45%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[nsgrid-incoords7-False-None-None] PASSED [ 46%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[nsgrid-incoords7-True-0.0-box0] PASSED [ 46%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[nsgrid-incoords7-True-0.0-box1] PASSED [ 46%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[nsgrid-incoords7-True-0.0-None] PASSED [ 46%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[nsgrid-incoords7-True-None-box0] PASSED [ 46%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[nsgrid-incoords7-True-None-box1] PASSED [ 46%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[nsgrid-incoords7-True-None-None] PASSED [ 46%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[nsgrid-incoords8-False-0.0-box0] PASSED [ 46%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[nsgrid-incoords8-False-0.0-box1] PASSED [ 46%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[nsgrid-incoords8-False-0.0-None] PASSED [ 46%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[nsgrid-incoords8-False-None-box0] PASSED [ 46%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[nsgrid-incoords8-False-None-box1] PASSED [ 46%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[nsgrid-incoords8-False-None-None] PASSED [ 46%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[nsgrid-incoords8-True-0.0-box0] PASSED [ 46%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[nsgrid-incoords8-True-0.0-box1] PASSED [ 46%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[nsgrid-incoords8-True-0.0-None] PASSED [ 46%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[nsgrid-incoords8-True-None-box0] PASSED [ 46%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[nsgrid-incoords8-True-None-box1] PASSED [ 46%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[nsgrid-incoords8-True-None-None] PASSED [ 46%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[nsgrid-incoords9-False-0.0-box0] PASSED [ 46%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[nsgrid-incoords9-False-0.0-box1] PASSED [ 46%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[nsgrid-incoords9-False-0.0-None] PASSED [ 46%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[nsgrid-incoords9-False-None-box0] PASSED [ 46%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[nsgrid-incoords9-False-None-box1] PASSED [ 46%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[nsgrid-incoords9-False-None-None] PASSED [ 46%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[nsgrid-incoords9-True-0.0-box0] PASSED [ 46%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[nsgrid-incoords9-True-0.0-box1] PASSED [ 46%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[nsgrid-incoords9-True-0.0-None] PASSED [ 46%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[nsgrid-incoords9-True-None-box0] PASSED [ 46%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[nsgrid-incoords9-True-None-box1] PASSED [ 46%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[nsgrid-incoords9-True-None-None] PASSED [ 46%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[None-incoords0-False-0.0-box0] PASSED [ 46%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[None-incoords0-False-0.0-box1] PASSED [ 46%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[None-incoords0-False-0.0-None] PASSED [ 46%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[None-incoords0-False-None-box0] PASSED [ 46%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[None-incoords0-False-None-box1] PASSED [ 46%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[None-incoords0-False-None-None] PASSED [ 46%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[None-incoords0-True-0.0-box0] PASSED [ 46%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[None-incoords0-True-0.0-box1] PASSED [ 46%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[None-incoords0-True-0.0-None] PASSED [ 46%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[None-incoords0-True-None-box0] PASSED [ 46%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[None-incoords0-True-None-box1] PASSED [ 46%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[None-incoords0-True-None-None] PASSED [ 46%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[None-incoords1-False-0.0-box0] PASSED [ 46%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[None-incoords1-False-0.0-box1] PASSED [ 46%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[None-incoords1-False-0.0-None] PASSED [ 46%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[None-incoords1-False-None-box0] PASSED [ 46%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[None-incoords1-False-None-box1] PASSED [ 46%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[None-incoords1-False-None-None] PASSED [ 46%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[None-incoords1-True-0.0-box0] PASSED [ 46%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[None-incoords1-True-0.0-box1] PASSED [ 46%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[None-incoords1-True-0.0-None] PASSED [ 46%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[None-incoords1-True-None-box0] PASSED [ 46%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[None-incoords1-True-None-box1] PASSED [ 46%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[None-incoords1-True-None-None] PASSED [ 46%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[None-incoords2-False-0.0-box0] PASSED [ 46%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[None-incoords2-False-0.0-box1] PASSED [ 46%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[None-incoords2-False-0.0-None] PASSED [ 46%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[None-incoords2-False-None-box0] PASSED [ 46%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[None-incoords2-False-None-box1] PASSED [ 46%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[None-incoords2-False-None-None] PASSED [ 46%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[None-incoords2-True-0.0-box0] PASSED [ 46%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[None-incoords2-True-0.0-box1] PASSED [ 46%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[None-incoords2-True-0.0-None] PASSED [ 46%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[None-incoords2-True-None-box0] PASSED [ 46%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[None-incoords2-True-None-box1] PASSED [ 46%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[None-incoords2-True-None-None] PASSED [ 46%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[None-incoords3-False-0.0-box0] PASSED [ 46%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[None-incoords3-False-0.0-box1] PASSED [ 46%] 617s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[None-incoords3-False-0.0-None] PASSED [ 46%] 618s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[None-incoords3-False-None-box0] PASSED [ 46%] 618s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[None-incoords3-False-None-box1] PASSED [ 46%] 618s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[None-incoords3-False-None-None] PASSED [ 46%] 618s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[None-incoords3-True-0.0-box0] PASSED [ 46%] 618s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[None-incoords3-True-0.0-box1] PASSED [ 46%] 618s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[None-incoords3-True-0.0-None] PASSED [ 46%] 618s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[None-incoords3-True-None-box0] PASSED [ 46%] 618s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[None-incoords3-True-None-box1] PASSED [ 46%] 618s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[None-incoords3-True-None-None] PASSED [ 46%] 618s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[None-incoords4-False-0.0-box0] PASSED [ 46%] 618s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[None-incoords4-False-0.0-box1] PASSED [ 46%] 618s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[None-incoords4-False-0.0-None] PASSED [ 46%] 618s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[None-incoords4-False-None-box0] PASSED [ 46%] 618s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[None-incoords4-False-None-box1] PASSED [ 46%] 618s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[None-incoords4-False-None-None] PASSED [ 46%] 618s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[None-incoords4-True-0.0-box0] PASSED [ 46%] 618s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[None-incoords4-True-0.0-box1] PASSED [ 46%] 618s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[None-incoords4-True-0.0-None] PASSED [ 46%] 618s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[None-incoords4-True-None-box0] PASSED [ 46%] 618s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[None-incoords4-True-None-box1] PASSED [ 46%] 618s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[None-incoords4-True-None-None] PASSED [ 46%] 618s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[None-incoords5-False-0.0-box0] PASSED [ 46%] 618s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[None-incoords5-False-0.0-box1] PASSED [ 46%] 618s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[None-incoords5-False-0.0-None] PASSED [ 46%] 618s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[None-incoords5-False-None-box0] PASSED [ 46%] 618s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[None-incoords5-False-None-box1] PASSED [ 46%] 618s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[None-incoords5-False-None-None] PASSED [ 46%] 618s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[None-incoords5-True-0.0-box0] PASSED [ 46%] 618s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[None-incoords5-True-0.0-box1] PASSED [ 46%] 618s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[None-incoords5-True-0.0-None] PASSED [ 46%] 618s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[None-incoords5-True-None-box0] PASSED [ 46%] 618s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[None-incoords5-True-None-box1] PASSED [ 46%] 618s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[None-incoords5-True-None-None] PASSED [ 46%] 618s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[None-incoords6-False-0.0-box0] PASSED [ 46%] 618s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[None-incoords6-False-0.0-box1] PASSED [ 46%] 618s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[None-incoords6-False-0.0-None] PASSED [ 46%] 618s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[None-incoords6-False-None-box0] PASSED [ 46%] 618s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[None-incoords6-False-None-box1] PASSED [ 46%] 618s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[None-incoords6-False-None-None] PASSED [ 46%] 618s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[None-incoords6-True-0.0-box0] PASSED [ 46%] 618s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[None-incoords6-True-0.0-box1] PASSED [ 46%] 618s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[None-incoords6-True-0.0-None] PASSED [ 46%] 618s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[None-incoords6-True-None-box0] PASSED [ 46%] 618s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[None-incoords6-True-None-box1] PASSED [ 46%] 618s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[None-incoords6-True-None-None] PASSED [ 46%] 618s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[None-incoords7-False-0.0-box0] PASSED [ 46%] 618s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[None-incoords7-False-0.0-box1] PASSED [ 46%] 618s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[None-incoords7-False-0.0-None] PASSED [ 46%] 618s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[None-incoords7-False-None-box0] PASSED [ 46%] 618s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[None-incoords7-False-None-box1] PASSED [ 46%] 618s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[None-incoords7-False-None-None] PASSED [ 46%] 618s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[None-incoords7-True-0.0-box0] PASSED [ 46%] 618s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[None-incoords7-True-0.0-box1] PASSED [ 46%] 618s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[None-incoords7-True-0.0-None] PASSED [ 46%] 618s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[None-incoords7-True-None-box0] PASSED [ 46%] 618s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[None-incoords7-True-None-box1] PASSED [ 46%] 618s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[None-incoords7-True-None-None] PASSED [ 46%] 618s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[None-incoords8-False-0.0-box0] PASSED [ 46%] 618s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[None-incoords8-False-0.0-box1] PASSED [ 46%] 618s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[None-incoords8-False-0.0-None] PASSED [ 46%] 618s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[None-incoords8-False-None-box0] PASSED [ 46%] 618s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[None-incoords8-False-None-box1] PASSED [ 46%] 618s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[None-incoords8-False-None-None] PASSED [ 46%] 618s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[None-incoords8-True-0.0-box0] PASSED [ 46%] 618s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[None-incoords8-True-0.0-box1] PASSED [ 46%] 618s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[None-incoords8-True-0.0-None] PASSED [ 46%] 618s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[None-incoords8-True-None-box0] PASSED [ 46%] 618s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[None-incoords8-True-None-box1] PASSED [ 46%] 618s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[None-incoords8-True-None-None] PASSED [ 46%] 618s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[None-incoords9-False-0.0-box0] PASSED [ 46%] 618s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[None-incoords9-False-0.0-box1] PASSED [ 46%] 618s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[None-incoords9-False-0.0-None] PASSED [ 46%] 618s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[None-incoords9-False-None-box0] PASSED [ 46%] 618s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[None-incoords9-False-None-box1] PASSED [ 46%] 618s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[None-incoords9-False-None-None] PASSED [ 46%] 618s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[None-incoords9-True-0.0-box0] PASSED [ 46%] 618s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[None-incoords9-True-0.0-box1] PASSED [ 46%] 618s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[None-incoords9-True-0.0-None] PASSED [ 46%] 618s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[None-incoords9-True-None-box0] PASSED [ 46%] 618s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[None-incoords9-True-None-box1] PASSED [ 46%] 618s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[None-incoords9-True-None-None] PASSED [ 46%] 618s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_self_capped_distance[bruteforce-incoords0-False-0.0-box0] PASSED [ 46%] 618s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_self_capped_distance[bruteforce-incoords0-False-0.0-box1] PASSED [ 46%] 618s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_self_capped_distance[bruteforce-incoords0-False-0.0-None] PASSED [ 46%] 618s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_self_capped_distance[bruteforce-incoords0-False-None-box0] PASSED [ 46%] 618s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_self_capped_distance[bruteforce-incoords0-False-None-box1] PASSED [ 46%] 618s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_self_capped_distance[bruteforce-incoords0-False-None-None] PASSED [ 46%] 618s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_self_capped_distance[bruteforce-incoords0-True-0.0-box0] PASSED [ 46%] 618s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_self_capped_distance[bruteforce-incoords0-True-0.0-box1] PASSED [ 46%] 618s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_self_capped_distance[bruteforce-incoords0-True-0.0-None] PASSED [ 46%] 618s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_self_capped_distance[bruteforce-incoords0-True-None-box0] PASSED [ 46%] 618s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_self_capped_distance[bruteforce-incoords0-True-None-box1] PASSED [ 46%] 618s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_self_capped_distance[bruteforce-incoords0-True-None-None] PASSED [ 46%] 618s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_self_capped_distance[bruteforce-incoords1-False-0.0-box0] PASSED [ 46%] 618s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_self_capped_distance[bruteforce-incoords1-False-0.0-box1] PASSED [ 46%] 618s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_self_capped_distance[bruteforce-incoords1-False-0.0-None] PASSED [ 46%] 618s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_self_capped_distance[bruteforce-incoords1-False-None-box0] PASSED [ 46%] 618s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_self_capped_distance[bruteforce-incoords1-False-None-box1] PASSED [ 46%] 618s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_self_capped_distance[bruteforce-incoords1-False-None-None] PASSED [ 46%] 618s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_self_capped_distance[bruteforce-incoords1-True-0.0-box0] PASSED [ 46%] 618s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_self_capped_distance[bruteforce-incoords1-True-0.0-box1] PASSED [ 46%] 618s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_self_capped_distance[bruteforce-incoords1-True-0.0-None] PASSED [ 46%] 618s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_self_capped_distance[bruteforce-incoords1-True-None-box0] PASSED [ 46%] 618s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_self_capped_distance[bruteforce-incoords1-True-None-box1] PASSED [ 46%] 618s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_self_capped_distance[bruteforce-incoords1-True-None-None] PASSED [ 46%] 618s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_self_capped_distance[bruteforce-incoords2-False-0.0-box0] PASSED [ 46%] 618s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_self_capped_distance[bruteforce-incoords2-False-0.0-box1] PASSED [ 46%] 618s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_self_capped_distance[bruteforce-incoords2-False-0.0-None] PASSED [ 46%] 618s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_self_capped_distance[bruteforce-incoords2-False-None-box0] PASSED [ 46%] 618s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_self_capped_distance[bruteforce-incoords2-False-None-box1] PASSED [ 46%] 618s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_self_capped_distance[bruteforce-incoords2-False-None-None] PASSED [ 46%] 618s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_self_capped_distance[bruteforce-incoords2-True-0.0-box0] PASSED [ 46%] 618s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_self_capped_distance[bruteforce-incoords2-True-0.0-box1] PASSED [ 46%] 618s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_self_capped_distance[bruteforce-incoords2-True-0.0-None] PASSED [ 46%] 618s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_self_capped_distance[bruteforce-incoords2-True-None-box0] PASSED [ 47%] 618s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_self_capped_distance[bruteforce-incoords2-True-None-box1] PASSED [ 47%] 618s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_self_capped_distance[bruteforce-incoords2-True-None-None] PASSED [ 47%] 618s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_self_capped_distance[bruteforce-incoords3-False-0.0-box0] PASSED [ 47%] 618s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_self_capped_distance[bruteforce-incoords3-False-0.0-box1] PASSED [ 47%] 618s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_self_capped_distance[bruteforce-incoords3-False-0.0-None] PASSED [ 47%] 618s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_self_capped_distance[bruteforce-incoords3-False-None-box0] PASSED [ 47%] 618s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_self_capped_distance[bruteforce-incoords3-False-None-box1] PASSED [ 47%] 618s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_self_capped_distance[bruteforce-incoords3-False-None-None] PASSED [ 47%] 618s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_self_capped_distance[bruteforce-incoords3-True-0.0-box0] PASSED [ 47%] 618s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_self_capped_distance[bruteforce-incoords3-True-0.0-box1] PASSED [ 47%] 618s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_self_capped_distance[bruteforce-incoords3-True-0.0-None] PASSED [ 47%] 618s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_self_capped_distance[bruteforce-incoords3-True-None-box0] PASSED [ 47%] 618s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_self_capped_distance[bruteforce-incoords3-True-None-box1] PASSED [ 47%] 618s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_self_capped_distance[bruteforce-incoords3-True-None-None] PASSED [ 47%] 618s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_self_capped_distance[pkdtree-incoords0-False-0.0-box0] PASSED [ 47%] 618s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_self_capped_distance[pkdtree-incoords0-False-0.0-box1] PASSED [ 47%] 618s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_self_capped_distance[pkdtree-incoords0-False-0.0-None] PASSED [ 47%] 618s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_self_capped_distance[pkdtree-incoords0-False-None-box0] PASSED [ 47%] 618s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_self_capped_distance[pkdtree-incoords0-False-None-box1] PASSED [ 47%] 618s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_self_capped_distance[pkdtree-incoords0-False-None-None] PASSED [ 47%] 618s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_self_capped_distance[pkdtree-incoords0-True-0.0-box0] PASSED [ 47%] 618s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_self_capped_distance[pkdtree-incoords0-True-0.0-box1] PASSED [ 47%] 618s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_self_capped_distance[pkdtree-incoords0-True-0.0-None] PASSED [ 47%] 618s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_self_capped_distance[pkdtree-incoords0-True-None-box0] PASSED [ 47%] 618s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_self_capped_distance[pkdtree-incoords0-True-None-box1] PASSED [ 47%] 618s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_self_capped_distance[pkdtree-incoords0-True-None-None] PASSED [ 47%] 618s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_self_capped_distance[pkdtree-incoords1-False-0.0-box0] PASSED [ 47%] 618s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_self_capped_distance[pkdtree-incoords1-False-0.0-box1] PASSED [ 47%] 618s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_self_capped_distance[pkdtree-incoords1-False-0.0-None] PASSED [ 47%] 618s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_self_capped_distance[pkdtree-incoords1-False-None-box0] PASSED [ 47%] 618s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_self_capped_distance[pkdtree-incoords1-False-None-box1] PASSED [ 47%] 618s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_self_capped_distance[pkdtree-incoords1-False-None-None] PASSED [ 47%] 618s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_self_capped_distance[pkdtree-incoords1-True-0.0-box0] PASSED [ 47%] 618s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_self_capped_distance[pkdtree-incoords1-True-0.0-box1] PASSED [ 47%] 618s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_self_capped_distance[pkdtree-incoords1-True-0.0-None] PASSED [ 47%] 618s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_self_capped_distance[pkdtree-incoords1-True-None-box0] PASSED [ 47%] 618s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_self_capped_distance[pkdtree-incoords1-True-None-box1] PASSED [ 47%] 618s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_self_capped_distance[pkdtree-incoords1-True-None-None] PASSED [ 47%] 618s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_self_capped_distance[pkdtree-incoords2-False-0.0-box0] PASSED [ 47%] 618s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_self_capped_distance[pkdtree-incoords2-False-0.0-box1] PASSED [ 47%] 618s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_self_capped_distance[pkdtree-incoords2-False-0.0-None] PASSED [ 47%] 618s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_self_capped_distance[pkdtree-incoords2-False-None-box0] PASSED [ 47%] 618s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_self_capped_distance[pkdtree-incoords2-False-None-box1] PASSED [ 47%] 618s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_self_capped_distance[pkdtree-incoords2-False-None-None] PASSED [ 47%] 618s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_self_capped_distance[pkdtree-incoords2-True-0.0-box0] PASSED [ 47%] 618s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_self_capped_distance[pkdtree-incoords2-True-0.0-box1] PASSED [ 47%] 618s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_self_capped_distance[pkdtree-incoords2-True-0.0-None] PASSED [ 47%] 618s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_self_capped_distance[pkdtree-incoords2-True-None-box0] PASSED [ 47%] 618s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_self_capped_distance[pkdtree-incoords2-True-None-box1] PASSED [ 47%] 618s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_self_capped_distance[pkdtree-incoords2-True-None-None] PASSED [ 47%] 618s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_self_capped_distance[pkdtree-incoords3-False-0.0-box0] PASSED [ 47%] 618s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_self_capped_distance[pkdtree-incoords3-False-0.0-box1] PASSED [ 47%] 618s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_self_capped_distance[pkdtree-incoords3-False-0.0-None] PASSED [ 47%] 618s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_self_capped_distance[pkdtree-incoords3-False-None-box0] PASSED [ 47%] 618s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_self_capped_distance[pkdtree-incoords3-False-None-box1] PASSED [ 47%] 618s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_self_capped_distance[pkdtree-incoords3-False-None-None] PASSED [ 47%] 618s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_self_capped_distance[pkdtree-incoords3-True-0.0-box0] PASSED [ 47%] 618s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_self_capped_distance[pkdtree-incoords3-True-0.0-box1] PASSED [ 47%] 618s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_self_capped_distance[pkdtree-incoords3-True-0.0-None] PASSED [ 47%] 618s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_self_capped_distance[pkdtree-incoords3-True-None-box0] PASSED [ 47%] 618s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_self_capped_distance[pkdtree-incoords3-True-None-box1] PASSED [ 47%] 618s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_self_capped_distance[pkdtree-incoords3-True-None-None] PASSED [ 47%] 618s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_self_capped_distance[nsgrid-incoords0-False-0.0-box0] PASSED [ 47%] 618s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_self_capped_distance[nsgrid-incoords0-False-0.0-box1] PASSED [ 47%] 618s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_self_capped_distance[nsgrid-incoords0-False-0.0-None] PASSED [ 47%] 618s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_self_capped_distance[nsgrid-incoords0-False-None-box0] PASSED [ 47%] 618s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_self_capped_distance[nsgrid-incoords0-False-None-box1] PASSED [ 47%] 618s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_self_capped_distance[nsgrid-incoords0-False-None-None] PASSED [ 47%] 618s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_self_capped_distance[nsgrid-incoords0-True-0.0-box0] PASSED [ 47%] 618s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_self_capped_distance[nsgrid-incoords0-True-0.0-box1] PASSED [ 47%] 618s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_self_capped_distance[nsgrid-incoords0-True-0.0-None] PASSED [ 47%] 618s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_self_capped_distance[nsgrid-incoords0-True-None-box0] PASSED [ 47%] 618s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_self_capped_distance[nsgrid-incoords0-True-None-box1] PASSED [ 47%] 618s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_self_capped_distance[nsgrid-incoords0-True-None-None] PASSED [ 47%] 618s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_self_capped_distance[nsgrid-incoords1-False-0.0-box0] PASSED [ 47%] 618s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_self_capped_distance[nsgrid-incoords1-False-0.0-box1] PASSED [ 47%] 618s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_self_capped_distance[nsgrid-incoords1-False-0.0-None] PASSED [ 47%] 618s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_self_capped_distance[nsgrid-incoords1-False-None-box0] PASSED [ 47%] 618s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_self_capped_distance[nsgrid-incoords1-False-None-box1] PASSED [ 47%] 618s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_self_capped_distance[nsgrid-incoords1-False-None-None] PASSED [ 47%] 618s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_self_capped_distance[nsgrid-incoords1-True-0.0-box0] PASSED [ 47%] 618s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_self_capped_distance[nsgrid-incoords1-True-0.0-box1] PASSED [ 47%] 618s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_self_capped_distance[nsgrid-incoords1-True-0.0-None] PASSED [ 47%] 618s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_self_capped_distance[nsgrid-incoords1-True-None-box0] PASSED [ 47%] 618s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_self_capped_distance[nsgrid-incoords1-True-None-box1] PASSED [ 47%] 618s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_self_capped_distance[nsgrid-incoords1-True-None-None] PASSED [ 47%] 618s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_self_capped_distance[nsgrid-incoords2-False-0.0-box0] PASSED [ 47%] 618s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_self_capped_distance[nsgrid-incoords2-False-0.0-box1] PASSED [ 47%] 618s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_self_capped_distance[nsgrid-incoords2-False-0.0-None] PASSED [ 47%] 618s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_self_capped_distance[nsgrid-incoords2-False-None-box0] PASSED [ 47%] 618s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_self_capped_distance[nsgrid-incoords2-False-None-box1] PASSED [ 47%] 618s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_self_capped_distance[nsgrid-incoords2-False-None-None] PASSED [ 47%] 618s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_self_capped_distance[nsgrid-incoords2-True-0.0-box0] PASSED [ 47%] 618s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_self_capped_distance[nsgrid-incoords2-True-0.0-box1] PASSED [ 47%] 618s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_self_capped_distance[nsgrid-incoords2-True-0.0-None] PASSED [ 47%] 618s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_self_capped_distance[nsgrid-incoords2-True-None-box0] PASSED [ 47%] 618s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_self_capped_distance[nsgrid-incoords2-True-None-box1] PASSED [ 47%] 618s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_self_capped_distance[nsgrid-incoords2-True-None-None] PASSED [ 47%] 618s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_self_capped_distance[nsgrid-incoords3-False-0.0-box0] PASSED [ 47%] 618s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_self_capped_distance[nsgrid-incoords3-False-0.0-box1] PASSED [ 47%] 618s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_self_capped_distance[nsgrid-incoords3-False-0.0-None] PASSED [ 47%] 618s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_self_capped_distance[nsgrid-incoords3-False-None-box0] PASSED [ 47%] 618s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_self_capped_distance[nsgrid-incoords3-False-None-box1] PASSED [ 47%] 618s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_self_capped_distance[nsgrid-incoords3-False-None-None] PASSED [ 47%] 618s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_self_capped_distance[nsgrid-incoords3-True-0.0-box0] PASSED [ 47%] 618s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_self_capped_distance[nsgrid-incoords3-True-0.0-box1] PASSED [ 47%] 618s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_self_capped_distance[nsgrid-incoords3-True-0.0-None] PASSED [ 47%] 618s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_self_capped_distance[nsgrid-incoords3-True-None-box0] PASSED [ 47%] 618s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_self_capped_distance[nsgrid-incoords3-True-None-box1] PASSED [ 47%] 618s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_self_capped_distance[nsgrid-incoords3-True-None-None] PASSED [ 47%] 618s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_self_capped_distance[None-incoords0-False-0.0-box0] PASSED [ 47%] 618s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_self_capped_distance[None-incoords0-False-0.0-box1] PASSED [ 47%] 618s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_self_capped_distance[None-incoords0-False-0.0-None] PASSED [ 47%] 618s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_self_capped_distance[None-incoords0-False-None-box0] PASSED [ 47%] 618s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_self_capped_distance[None-incoords0-False-None-box1] PASSED [ 47%] 618s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_self_capped_distance[None-incoords0-False-None-None] PASSED [ 47%] 618s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_self_capped_distance[None-incoords0-True-0.0-box0] PASSED [ 47%] 618s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_self_capped_distance[None-incoords0-True-0.0-box1] PASSED [ 47%] 618s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_self_capped_distance[None-incoords0-True-0.0-None] PASSED [ 47%] 618s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_self_capped_distance[None-incoords0-True-None-box0] PASSED [ 47%] 618s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_self_capped_distance[None-incoords0-True-None-box1] PASSED [ 47%] 618s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_self_capped_distance[None-incoords0-True-None-None] PASSED [ 47%] 618s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_self_capped_distance[None-incoords1-False-0.0-box0] PASSED [ 47%] 618s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_self_capped_distance[None-incoords1-False-0.0-box1] PASSED [ 47%] 618s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_self_capped_distance[None-incoords1-False-0.0-None] PASSED [ 47%] 618s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_self_capped_distance[None-incoords1-False-None-box0] PASSED [ 47%] 618s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_self_capped_distance[None-incoords1-False-None-box1] PASSED [ 47%] 618s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_self_capped_distance[None-incoords1-False-None-None] PASSED [ 47%] 618s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_self_capped_distance[None-incoords1-True-0.0-box0] PASSED [ 47%] 618s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_self_capped_distance[None-incoords1-True-0.0-box1] PASSED [ 47%] 618s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_self_capped_distance[None-incoords1-True-0.0-None] PASSED [ 47%] 618s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_self_capped_distance[None-incoords1-True-None-box0] PASSED [ 47%] 618s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_self_capped_distance[None-incoords1-True-None-box1] PASSED [ 47%] 618s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_self_capped_distance[None-incoords1-True-None-None] PASSED [ 47%] 618s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_self_capped_distance[None-incoords2-False-0.0-box0] PASSED [ 47%] 618s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_self_capped_distance[None-incoords2-False-0.0-box1] PASSED [ 47%] 618s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_self_capped_distance[None-incoords2-False-0.0-None] PASSED [ 47%] 618s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_self_capped_distance[None-incoords2-False-None-box0] PASSED [ 47%] 618s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_self_capped_distance[None-incoords2-False-None-box1] PASSED [ 47%] 618s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_self_capped_distance[None-incoords2-False-None-None] PASSED [ 47%] 618s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_self_capped_distance[None-incoords2-True-0.0-box0] PASSED [ 47%] 618s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_self_capped_distance[None-incoords2-True-0.0-box1] PASSED [ 47%] 618s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_self_capped_distance[None-incoords2-True-0.0-None] PASSED [ 47%] 618s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_self_capped_distance[None-incoords2-True-None-box0] PASSED [ 47%] 618s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_self_capped_distance[None-incoords2-True-None-box1] PASSED [ 47%] 618s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_self_capped_distance[None-incoords2-True-None-None] PASSED [ 47%] 618s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_self_capped_distance[None-incoords3-False-0.0-box0] PASSED [ 47%] 618s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_self_capped_distance[None-incoords3-False-0.0-box1] PASSED [ 47%] 618s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_self_capped_distance[None-incoords3-False-0.0-None] PASSED [ 47%] 618s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_self_capped_distance[None-incoords3-False-None-box0] PASSED [ 47%] 618s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_self_capped_distance[None-incoords3-False-None-box1] PASSED [ 47%] 618s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_self_capped_distance[None-incoords3-False-None-None] PASSED [ 47%] 618s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_self_capped_distance[None-incoords3-True-0.0-box0] PASSED [ 47%] 618s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_self_capped_distance[None-incoords3-True-0.0-box1] PASSED [ 47%] 618s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_self_capped_distance[None-incoords3-True-0.0-None] PASSED [ 47%] 618s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_self_capped_distance[None-incoords3-True-None-box0] PASSED [ 47%] 618s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_self_capped_distance[None-incoords3-True-None-box1] PASSED [ 47%] 618s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_self_capped_distance[None-incoords3-True-None-None] PASSED [ 47%] 618s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_dtype_transform_RtoS[serial-incoords0-box0] PASSED [ 47%] 618s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_dtype_transform_RtoS[serial-incoords0-box1] PASSED [ 47%] 618s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_dtype_transform_RtoS[serial-incoords1-box0] PASSED [ 47%] 618s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_dtype_transform_RtoS[serial-incoords1-box1] PASSED [ 47%] 618s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_dtype_transform_RtoS[serial-incoords2-box0] PASSED [ 47%] 618s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_dtype_transform_RtoS[serial-incoords2-box1] PASSED [ 47%] 618s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_dtype_transform_RtoS[serial-incoords3-box0] PASSED [ 47%] 618s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_dtype_transform_RtoS[serial-incoords3-box1] PASSED [ 47%] 618s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_dtype_transform_RtoS[openmp-incoords0-box0] PASSED [ 47%] 618s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_dtype_transform_RtoS[openmp-incoords0-box1] PASSED [ 47%] 618s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_dtype_transform_RtoS[openmp-incoords1-box0] PASSED [ 47%] 618s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_dtype_transform_RtoS[openmp-incoords1-box1] PASSED [ 47%] 618s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_dtype_transform_RtoS[openmp-incoords2-box0] PASSED [ 47%] 618s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_dtype_transform_RtoS[openmp-incoords2-box1] PASSED [ 47%] 618s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_dtype_transform_RtoS[openmp-incoords3-box0] PASSED [ 47%] 618s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_dtype_transform_RtoS[openmp-incoords3-box1] PASSED [ 47%] 618s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_calc_bonds[serial-incoords0-box0] PASSED [ 47%] 618s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_calc_bonds[serial-incoords0-box1] PASSED [ 47%] 618s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_calc_bonds[serial-incoords0-None] PASSED [ 47%] 618s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_calc_bonds[serial-incoords1-box0] PASSED [ 47%] 618s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_calc_bonds[serial-incoords1-box1] PASSED [ 47%] 618s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_calc_bonds[serial-incoords1-None] PASSED [ 47%] 618s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_calc_bonds[serial-incoords2-box0] PASSED [ 47%] 618s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_calc_bonds[serial-incoords2-box1] PASSED [ 47%] 618s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_calc_bonds[serial-incoords2-None] PASSED [ 47%] 618s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_calc_bonds[serial-incoords3-box0] PASSED [ 48%] 618s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_calc_bonds[serial-incoords3-box1] PASSED [ 48%] 618s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_calc_bonds[serial-incoords3-None] PASSED [ 48%] 618s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_calc_bonds[serial-incoords4-box0] PASSED [ 48%] 618s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_calc_bonds[serial-incoords4-box1] PASSED [ 48%] 618s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_calc_bonds[serial-incoords4-None] PASSED [ 48%] 618s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_calc_bonds[serial-incoords5-box0] PASSED [ 48%] 618s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_calc_bonds[serial-incoords5-box1] PASSED [ 48%] 618s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_calc_bonds[serial-incoords5-None] PASSED [ 48%] 618s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_calc_bonds[serial-incoords6-box0] PASSED [ 48%] 618s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_calc_bonds[serial-incoords6-box1] PASSED [ 48%] 618s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_calc_bonds[serial-incoords6-None] PASSED [ 48%] 618s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_calc_bonds[openmp-incoords0-box0] PASSED [ 48%] 618s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_calc_bonds[openmp-incoords0-box1] PASSED [ 48%] 618s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_calc_bonds[openmp-incoords0-None] PASSED [ 48%] 618s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_calc_bonds[openmp-incoords1-box0] PASSED [ 48%] 618s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_calc_bonds[openmp-incoords1-box1] PASSED [ 48%] 618s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_calc_bonds[openmp-incoords1-None] PASSED [ 48%] 618s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_calc_bonds[openmp-incoords2-box0] PASSED [ 48%] 618s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_calc_bonds[openmp-incoords2-box1] PASSED [ 48%] 618s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_calc_bonds[openmp-incoords2-None] PASSED [ 48%] 618s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_calc_bonds[openmp-incoords3-box0] PASSED [ 48%] 618s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_calc_bonds[openmp-incoords3-box1] PASSED [ 48%] 618s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_calc_bonds[openmp-incoords3-None] PASSED [ 48%] 618s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_calc_bonds[openmp-incoords4-box0] PASSED [ 48%] 618s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_calc_bonds[openmp-incoords4-box1] PASSED [ 48%] 618s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_calc_bonds[openmp-incoords4-None] PASSED [ 48%] 618s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_calc_bonds[openmp-incoords5-box0] PASSED [ 48%] 618s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_calc_bonds[openmp-incoords5-box1] PASSED [ 48%] 618s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_calc_bonds[openmp-incoords5-None] PASSED [ 48%] 618s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_calc_bonds[openmp-incoords6-box0] PASSED [ 48%] 618s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_calc_bonds[openmp-incoords6-box1] PASSED [ 48%] 618s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_calc_bonds[openmp-incoords6-None] PASSED [ 48%] 618s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_calc_angles[serial-incoords0-box0] PASSED [ 48%] 618s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_calc_angles[serial-incoords0-box1] PASSED [ 48%] 618s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_calc_angles[serial-incoords0-None] PASSED [ 48%] 618s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_calc_angles[serial-incoords1-box0] PASSED [ 48%] 618s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_calc_angles[serial-incoords1-box1] PASSED [ 48%] 618s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_calc_angles[serial-incoords1-None] PASSED [ 48%] 618s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_calc_angles[serial-incoords2-box0] PASSED [ 48%] 618s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_calc_angles[serial-incoords2-box1] PASSED [ 48%] 618s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_calc_angles[serial-incoords2-None] PASSED [ 48%] 618s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_calc_angles[serial-incoords3-box0] PASSED [ 48%] 618s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_calc_angles[serial-incoords3-box1] PASSED [ 48%] 618s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_calc_angles[serial-incoords3-None] PASSED [ 48%] 618s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_calc_angles[serial-incoords4-box0] PASSED [ 48%] 618s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_calc_angles[serial-incoords4-box1] PASSED [ 48%] 618s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_calc_angles[serial-incoords4-None] PASSED [ 48%] 618s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_calc_angles[serial-incoords5-box0] PASSED [ 48%] 618s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_calc_angles[serial-incoords5-box1] PASSED [ 48%] 618s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_calc_angles[serial-incoords5-None] PASSED [ 48%] 618s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_calc_angles[serial-incoords6-box0] PASSED [ 48%] 618s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_calc_angles[serial-incoords6-box1] PASSED [ 48%] 618s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_calc_angles[serial-incoords6-None] PASSED [ 48%] 618s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_calc_angles[serial-incoords7-box0] PASSED [ 48%] 618s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_calc_angles[serial-incoords7-box1] PASSED [ 48%] 618s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_calc_angles[serial-incoords7-None] PASSED [ 48%] 618s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_calc_angles[serial-incoords8-box0] PASSED [ 48%] 618s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_calc_angles[serial-incoords8-box1] PASSED [ 48%] 618s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_calc_angles[serial-incoords8-None] PASSED [ 48%] 618s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_calc_angles[serial-incoords9-box0] PASSED [ 48%] 618s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_calc_angles[serial-incoords9-box1] PASSED [ 48%] 618s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_calc_angles[serial-incoords9-None] PASSED [ 48%] 618s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_calc_angles[serial-incoords10-box0] PASSED [ 48%] 618s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_calc_angles[serial-incoords10-box1] PASSED [ 48%] 618s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_calc_angles[serial-incoords10-None] PASSED [ 48%] 618s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_calc_angles[openmp-incoords0-box0] PASSED [ 48%] 618s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_calc_angles[openmp-incoords0-box1] PASSED [ 48%] 618s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_calc_angles[openmp-incoords0-None] PASSED [ 48%] 618s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_calc_angles[openmp-incoords1-box0] PASSED [ 48%] 618s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_calc_angles[openmp-incoords1-box1] PASSED [ 48%] 618s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_calc_angles[openmp-incoords1-None] PASSED [ 48%] 618s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_calc_angles[openmp-incoords2-box0] PASSED [ 48%] 618s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_calc_angles[openmp-incoords2-box1] PASSED [ 48%] 618s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_calc_angles[openmp-incoords2-None] PASSED [ 48%] 618s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_calc_angles[openmp-incoords3-box0] PASSED [ 48%] 618s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_calc_angles[openmp-incoords3-box1] PASSED [ 48%] 618s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_calc_angles[openmp-incoords3-None] PASSED [ 48%] 618s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_calc_angles[openmp-incoords4-box0] PASSED [ 48%] 618s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_calc_angles[openmp-incoords4-box1] PASSED [ 48%] 618s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_calc_angles[openmp-incoords4-None] PASSED [ 48%] 618s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_calc_angles[openmp-incoords5-box0] PASSED [ 48%] 618s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_calc_angles[openmp-incoords5-box1] PASSED [ 48%] 618s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_calc_angles[openmp-incoords5-None] PASSED [ 48%] 618s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_calc_angles[openmp-incoords6-box0] PASSED [ 48%] 618s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_calc_angles[openmp-incoords6-box1] PASSED [ 48%] 618s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_calc_angles[openmp-incoords6-None] PASSED [ 48%] 618s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_calc_angles[openmp-incoords7-box0] PASSED [ 48%] 618s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_calc_angles[openmp-incoords7-box1] PASSED [ 48%] 618s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_calc_angles[openmp-incoords7-None] PASSED [ 48%] 618s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_calc_angles[openmp-incoords8-box0] PASSED [ 48%] 618s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_calc_angles[openmp-incoords8-box1] PASSED [ 48%] 618s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_calc_angles[openmp-incoords8-None] PASSED [ 48%] 618s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_calc_angles[openmp-incoords9-box0] PASSED [ 48%] 618s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_calc_angles[openmp-incoords9-box1] PASSED [ 48%] 618s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_calc_angles[openmp-incoords9-None] PASSED [ 48%] 618s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_calc_angles[openmp-incoords10-box0] PASSED [ 48%] 618s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_calc_angles[openmp-incoords10-box1] PASSED [ 48%] 618s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_calc_angles[openmp-incoords10-None] PASSED [ 48%] 618s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_calc_dihedrals[serial-incoords0-box0] PASSED [ 48%] 618s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_calc_dihedrals[serial-incoords0-box1] PASSED [ 48%] 618s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_calc_dihedrals[serial-incoords0-None] PASSED [ 48%] 618s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_calc_dihedrals[serial-incoords1-box0] PASSED [ 48%] 618s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_calc_dihedrals[serial-incoords1-box1] PASSED [ 48%] 618s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_calc_dihedrals[serial-incoords1-None] PASSED [ 48%] 618s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_calc_dihedrals[serial-incoords2-box0] PASSED [ 48%] 618s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_calc_dihedrals[serial-incoords2-box1] PASSED [ 48%] 618s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_calc_dihedrals[serial-incoords2-None] PASSED [ 48%] 618s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_calc_dihedrals[serial-incoords3-box0] PASSED [ 48%] 618s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_calc_dihedrals[serial-incoords3-box1] PASSED [ 48%] 618s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_calc_dihedrals[serial-incoords3-None] PASSED [ 48%] 618s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_calc_dihedrals[serial-incoords4-box0] PASSED [ 48%] 618s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_calc_dihedrals[serial-incoords4-box1] PASSED [ 48%] 618s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_calc_dihedrals[serial-incoords4-None] PASSED [ 48%] 618s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_calc_dihedrals[serial-incoords5-box0] PASSED [ 48%] 618s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_calc_dihedrals[serial-incoords5-box1] PASSED [ 48%] 618s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_calc_dihedrals[serial-incoords5-None] PASSED [ 48%] 618s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_calc_dihedrals[serial-incoords6-box0] PASSED [ 48%] 618s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_calc_dihedrals[serial-incoords6-box1] PASSED [ 48%] 618s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_calc_dihedrals[serial-incoords6-None] PASSED [ 48%] 618s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_calc_dihedrals[serial-incoords7-box0] PASSED [ 48%] 618s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_calc_dihedrals[serial-incoords7-box1] PASSED [ 48%] 618s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_calc_dihedrals[serial-incoords7-None] PASSED [ 48%] 618s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_calc_dihedrals[serial-incoords8-box0] PASSED [ 48%] 618s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_calc_dihedrals[serial-incoords8-box1] PASSED [ 48%] 618s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_calc_dihedrals[serial-incoords8-None] PASSED [ 48%] 618s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_calc_dihedrals[serial-incoords9-box0] PASSED [ 48%] 618s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_calc_dihedrals[serial-incoords9-box1] PASSED [ 48%] 618s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_calc_dihedrals[serial-incoords9-None] PASSED [ 48%] 618s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_calc_dihedrals[serial-incoords10-box0] PASSED [ 48%] 618s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_calc_dihedrals[serial-incoords10-box1] PASSED [ 48%] 618s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_calc_dihedrals[serial-incoords10-None] PASSED [ 48%] 618s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_calc_dihedrals[serial-incoords11-box0] PASSED [ 48%] 618s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_calc_dihedrals[serial-incoords11-box1] PASSED [ 48%] 618s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_calc_dihedrals[serial-incoords11-None] PASSED [ 48%] 618s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_calc_dihedrals[serial-incoords12-box0] PASSED [ 48%] 618s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_calc_dihedrals[serial-incoords12-box1] PASSED [ 48%] 618s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_calc_dihedrals[serial-incoords12-None] PASSED [ 48%] 618s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_calc_dihedrals[serial-incoords13-box0] PASSED [ 48%] 618s 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testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_calc_dihedrals[openmp-incoords11-box1] PASSED [ 48%] 618s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_calc_dihedrals[openmp-incoords11-None] PASSED [ 48%] 618s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_calc_dihedrals[openmp-incoords12-box0] PASSED [ 48%] 618s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_calc_dihedrals[openmp-incoords12-box1] PASSED [ 48%] 618s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_calc_dihedrals[openmp-incoords12-None] PASSED [ 49%] 618s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_calc_dihedrals[openmp-incoords13-box0] PASSED [ 49%] 618s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_calc_dihedrals[openmp-incoords13-box1] PASSED [ 49%] 618s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_calc_dihedrals[openmp-incoords13-None] PASSED [ 49%] 618s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_calc_dihedrals[openmp-incoords14-box0] PASSED [ 49%] 618s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_calc_dihedrals[openmp-incoords14-box1] PASSED [ 49%] 618s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_calc_dihedrals[openmp-incoords14-None] PASSED [ 49%] 618s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_calc_dihedrals[openmp-incoords15-box0] PASSED [ 49%] 618s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_calc_dihedrals[openmp-incoords15-box1] PASSED [ 49%] 618s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_calc_dihedrals[openmp-incoords15-None] PASSED [ 49%] 618s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_apply_PBC[serial-incoords0-box0] PASSED [ 49%] 618s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_apply_PBC[serial-incoords0-box1] PASSED [ 49%] 618s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_apply_PBC[serial-incoords1-box0] PASSED [ 49%] 618s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_apply_PBC[serial-incoords1-box1] PASSED [ 49%] 618s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_apply_PBC[serial-incoords2-box0] PASSED [ 49%] 618s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_apply_PBC[serial-incoords2-box1] PASSED [ 49%] 618s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_apply_PBC[serial-incoords3-box0] PASSED [ 49%] 618s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_apply_PBC[serial-incoords3-box1] PASSED [ 49%] 618s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_apply_PBC[openmp-incoords0-box0] PASSED [ 49%] 618s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_apply_PBC[openmp-incoords0-box1] PASSED [ 49%] 618s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_apply_PBC[openmp-incoords1-box0] PASSED [ 49%] 618s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_apply_PBC[openmp-incoords1-box1] PASSED [ 49%] 618s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_apply_PBC[openmp-incoords2-box0] PASSED [ 49%] 618s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_apply_PBC[openmp-incoords2-box1] PASSED [ 49%] 618s 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testsuite/MDAnalysisTests/lib/test_distances.py::TestDistanceBackendSelection::test_case_insensitivity[OpenMP] PASSED [ 49%] 618s testsuite/MDAnalysisTests/lib/test_distances.py::TestDistanceBackendSelection::test_case_insensitivity[oPENmP] PASSED [ 49%] 618s testsuite/MDAnalysisTests/lib/test_distances.py::TestDistanceBackendSelection::test_case_insensitivity[OPENMP] PASSED [ 49%] 618s testsuite/MDAnalysisTests/lib/test_distances.py::TestDistanceBackendSelection::test_wront_backend PASSED [ 49%] 618s testsuite/MDAnalysisTests/lib/test_distances.py::test_used_openmpflag PASSED [ 49%] 618s testsuite/MDAnalysisTests/lib/test_distances.py::test_minimize_vectors[float32-shift0-box0] PASSED [ 49%] 618s testsuite/MDAnalysisTests/lib/test_distances.py::test_minimize_vectors[float32-shift0-box1] PASSED [ 49%] 618s testsuite/MDAnalysisTests/lib/test_distances.py::test_minimize_vectors[float32-shift1-box0] PASSED [ 49%] 618s 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PASSED [ 49%] 618s testsuite/MDAnalysisTests/lib/test_distances.py::test_minimize_vectors[float32-shift19-box1] PASSED [ 49%] 618s testsuite/MDAnalysisTests/lib/test_distances.py::test_minimize_vectors[float32-shift20-box0] PASSED [ 49%] 618s testsuite/MDAnalysisTests/lib/test_distances.py::test_minimize_vectors[float32-shift20-box1] PASSED [ 49%] 618s testsuite/MDAnalysisTests/lib/test_distances.py::test_minimize_vectors[float32-shift21-box0] PASSED [ 49%] 618s testsuite/MDAnalysisTests/lib/test_distances.py::test_minimize_vectors[float32-shift21-box1] PASSED [ 49%] 618s testsuite/MDAnalysisTests/lib/test_distances.py::test_minimize_vectors[float32-shift22-box0] PASSED [ 49%] 618s testsuite/MDAnalysisTests/lib/test_distances.py::test_minimize_vectors[float32-shift22-box1] PASSED [ 49%] 618s testsuite/MDAnalysisTests/lib/test_distances.py::test_minimize_vectors[float32-shift23-box0] PASSED [ 49%] 618s 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PASSED [ 49%] 618s testsuite/MDAnalysisTests/lib/test_distances.py::test_minimize_vectors[float32-shift32-box1] PASSED [ 49%] 618s testsuite/MDAnalysisTests/lib/test_distances.py::test_minimize_vectors[float32-shift33-box0] PASSED [ 49%] 618s testsuite/MDAnalysisTests/lib/test_distances.py::test_minimize_vectors[float32-shift33-box1] PASSED [ 49%] 618s testsuite/MDAnalysisTests/lib/test_distances.py::test_minimize_vectors[float32-shift34-box0] PASSED [ 49%] 618s testsuite/MDAnalysisTests/lib/test_distances.py::test_minimize_vectors[float32-shift34-box1] PASSED [ 49%] 618s testsuite/MDAnalysisTests/lib/test_distances.py::test_minimize_vectors[float32-shift35-box0] PASSED [ 49%] 618s testsuite/MDAnalysisTests/lib/test_distances.py::test_minimize_vectors[float32-shift35-box1] PASSED [ 49%] 618s testsuite/MDAnalysisTests/lib/test_distances.py::test_minimize_vectors[float32-shift36-box0] PASSED [ 49%] 618s 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PASSED [ 51%] 618s testsuite/MDAnalysisTests/lib/test_distances.py::test_minimize_vectors[float64-shift85-box0] PASSED [ 51%] 618s testsuite/MDAnalysisTests/lib/test_distances.py::test_minimize_vectors[float64-shift85-box1] PASSED [ 51%] 618s testsuite/MDAnalysisTests/lib/test_distances.py::test_minimize_vectors[float64-shift86-box0] PASSED [ 51%] 618s testsuite/MDAnalysisTests/lib/test_distances.py::test_minimize_vectors[float64-shift86-box1] PASSED [ 51%] 618s testsuite/MDAnalysisTests/lib/test_distances.py::test_minimize_vectors[float64-shift87-box0] PASSED [ 51%] 618s testsuite/MDAnalysisTests/lib/test_distances.py::test_minimize_vectors[float64-shift87-box1] PASSED [ 51%] 618s testsuite/MDAnalysisTests/lib/test_distances.py::test_minimize_vectors[float64-shift88-box0] PASSED [ 51%] 618s testsuite/MDAnalysisTests/lib/test_distances.py::test_minimize_vectors[float64-shift88-box1] PASSED [ 51%] 618s 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51%] 618s testsuite/MDAnalysisTests/lib/test_distances.py::test_minimize_vectors[float64-shift93-box1] PASSED [ 51%] 618s testsuite/MDAnalysisTests/lib/test_distances.py::test_minimize_vectors[float64-shift94-box0] PASSED [ 51%] 618s testsuite/MDAnalysisTests/lib/test_distances.py::test_minimize_vectors[float64-shift94-box1] PASSED [ 51%] 618s testsuite/MDAnalysisTests/lib/test_distances.py::test_minimize_vectors[float64-shift95-box0] PASSED [ 51%] 618s testsuite/MDAnalysisTests/lib/test_distances.py::test_minimize_vectors[float64-shift95-box1] PASSED [ 51%] 618s testsuite/MDAnalysisTests/lib/test_distances.py::test_minimize_vectors[float64-shift96-box0] PASSED [ 51%] 618s testsuite/MDAnalysisTests/lib/test_distances.py::test_minimize_vectors[float64-shift96-box1] PASSED [ 51%] 618s testsuite/MDAnalysisTests/lib/test_distances.py::test_minimize_vectors[float64-shift97-box0] PASSED [ 51%] 618s testsuite/MDAnalysisTests/lib/test_distances.py::test_minimize_vectors[float64-shift97-box1] PASSED [ 51%] 618s testsuite/MDAnalysisTests/lib/test_distances.py::test_minimize_vectors[float64-shift98-box0] PASSED [ 51%] 618s testsuite/MDAnalysisTests/lib/test_distances.py::test_minimize_vectors[float64-shift98-box1] PASSED [ 51%] 618s testsuite/MDAnalysisTests/lib/test_distances.py::test_minimize_vectors[float64-shift99-box0] PASSED [ 51%] 618s testsuite/MDAnalysisTests/lib/test_distances.py::test_minimize_vectors[float64-shift99-box1] PASSED [ 51%] 618s testsuite/MDAnalysisTests/lib/test_distances.py::test_minimize_vectors[float64-shift100-box0] PASSED [ 51%] 618s testsuite/MDAnalysisTests/lib/test_distances.py::test_minimize_vectors[float64-shift100-box1] PASSED [ 51%] 618s testsuite/MDAnalysisTests/lib/test_distances.py::test_minimize_vectors[float64-shift101-box0] PASSED [ 51%] 618s testsuite/MDAnalysisTests/lib/test_distances.py::test_minimize_vectors[float64-shift101-box1] PASSED [ 51%] 618s testsuite/MDAnalysisTests/lib/test_distances.py::test_minimize_vectors[float64-shift102-box0] PASSED [ 51%] 618s testsuite/MDAnalysisTests/lib/test_distances.py::test_minimize_vectors[float64-shift102-box1] PASSED [ 51%] 618s testsuite/MDAnalysisTests/lib/test_distances.py::test_minimize_vectors[float64-shift103-box0] PASSED [ 51%] 618s testsuite/MDAnalysisTests/lib/test_distances.py::test_minimize_vectors[float64-shift103-box1] PASSED [ 51%] 618s testsuite/MDAnalysisTests/lib/test_distances.py::test_minimize_vectors[float64-shift104-box0] PASSED [ 51%] 618s testsuite/MDAnalysisTests/lib/test_distances.py::test_minimize_vectors[float64-shift104-box1] PASSED [ 51%] 618s testsuite/MDAnalysisTests/lib/test_distances.py::test_minimize_vectors[float64-shift105-box0] PASSED [ 51%] 618s testsuite/MDAnalysisTests/lib/test_distances.py::test_minimize_vectors[float64-shift105-box1] PASSED [ 51%] 618s testsuite/MDAnalysisTests/lib/test_distances.py::test_minimize_vectors[float64-shift106-box0] PASSED [ 51%] 618s testsuite/MDAnalysisTests/lib/test_distances.py::test_minimize_vectors[float64-shift106-box1] PASSED [ 51%] 618s testsuite/MDAnalysisTests/lib/test_distances.py::test_minimize_vectors[float64-shift107-box0] PASSED [ 51%] 618s testsuite/MDAnalysisTests/lib/test_distances.py::test_minimize_vectors[float64-shift107-box1] PASSED [ 51%] 618s testsuite/MDAnalysisTests/lib/test_distances.py::test_minimize_vectors[float64-shift108-box0] PASSED [ 51%] 618s testsuite/MDAnalysisTests/lib/test_distances.py::test_minimize_vectors[float64-shift108-box1] PASSED [ 51%] 618s testsuite/MDAnalysisTests/lib/test_distances.py::test_minimize_vectors[float64-shift109-box0] PASSED [ 51%] 618s testsuite/MDAnalysisTests/lib/test_distances.py::test_minimize_vectors[float64-shift109-box1] PASSED [ 51%] 618s testsuite/MDAnalysisTests/lib/test_distances.py::test_minimize_vectors[float64-shift110-box0] PASSED [ 51%] 618s testsuite/MDAnalysisTests/lib/test_distances.py::test_minimize_vectors[float64-shift110-box1] PASSED [ 51%] 618s testsuite/MDAnalysisTests/lib/test_distances.py::test_minimize_vectors[float64-shift111-box0] PASSED [ 51%] 618s testsuite/MDAnalysisTests/lib/test_distances.py::test_minimize_vectors[float64-shift111-box1] PASSED [ 51%] 618s testsuite/MDAnalysisTests/lib/test_distances.py::test_minimize_vectors[float64-shift112-box0] PASSED [ 51%] 618s testsuite/MDAnalysisTests/lib/test_distances.py::test_minimize_vectors[float64-shift112-box1] PASSED [ 51%] 618s testsuite/MDAnalysisTests/lib/test_distances.py::test_minimize_vectors[float64-shift113-box0] PASSED [ 51%] 618s testsuite/MDAnalysisTests/lib/test_distances.py::test_minimize_vectors[float64-shift113-box1] PASSED [ 51%] 618s testsuite/MDAnalysisTests/lib/test_distances.py::test_minimize_vectors[float64-shift114-box0] PASSED [ 51%] 618s testsuite/MDAnalysisTests/lib/test_distances.py::test_minimize_vectors[float64-shift114-box1] PASSED [ 51%] 618s testsuite/MDAnalysisTests/lib/test_distances.py::test_minimize_vectors[float64-shift115-box0] PASSED [ 51%] 618s testsuite/MDAnalysisTests/lib/test_distances.py::test_minimize_vectors[float64-shift115-box1] PASSED [ 51%] 618s testsuite/MDAnalysisTests/lib/test_distances.py::test_minimize_vectors[float64-shift116-box0] PASSED [ 51%] 618s testsuite/MDAnalysisTests/lib/test_distances.py::test_minimize_vectors[float64-shift116-box1] PASSED [ 51%] 618s testsuite/MDAnalysisTests/lib/test_distances.py::test_minimize_vectors[float64-shift117-box0] PASSED [ 51%] 618s testsuite/MDAnalysisTests/lib/test_distances.py::test_minimize_vectors[float64-shift117-box1] PASSED [ 51%] 618s testsuite/MDAnalysisTests/lib/test_distances.py::test_minimize_vectors[float64-shift118-box0] PASSED [ 51%] 618s testsuite/MDAnalysisTests/lib/test_distances.py::test_minimize_vectors[float64-shift118-box1] PASSED [ 51%] 618s testsuite/MDAnalysisTests/lib/test_distances.py::test_minimize_vectors[float64-shift119-box0] PASSED [ 51%] 618s testsuite/MDAnalysisTests/lib/test_distances.py::test_minimize_vectors[float64-shift119-box1] PASSED [ 51%] 618s testsuite/MDAnalysisTests/lib/test_distances.py::test_minimize_vectors[float64-shift120-box0] PASSED [ 51%] 618s testsuite/MDAnalysisTests/lib/test_distances.py::test_minimize_vectors[float64-shift120-box1] PASSED [ 51%] 618s testsuite/MDAnalysisTests/lib/test_distances.py::test_minimize_vectors[float64-shift121-box0] PASSED [ 51%] 618s testsuite/MDAnalysisTests/lib/test_distances.py::test_minimize_vectors[float64-shift121-box1] PASSED [ 51%] 618s testsuite/MDAnalysisTests/lib/test_distances.py::test_minimize_vectors[float64-shift122-box0] PASSED [ 51%] 618s testsuite/MDAnalysisTests/lib/test_distances.py::test_minimize_vectors[float64-shift122-box1] PASSED [ 51%] 618s testsuite/MDAnalysisTests/lib/test_distances.py::test_minimize_vectors[float64-shift123-box0] PASSED [ 51%] 618s testsuite/MDAnalysisTests/lib/test_distances.py::test_minimize_vectors[float64-shift123-box1] PASSED [ 51%] 618s testsuite/MDAnalysisTests/lib/test_distances.py::test_minimize_vectors[float64-shift124-box0] PASSED [ 51%] 618s testsuite/MDAnalysisTests/lib/test_distances.py::test_minimize_vectors[float64-shift124-box1] PASSED [ 51%] 618s testsuite/MDAnalysisTests/lib/test_log.py::TestProgressBar::test_output PASSED [ 51%] 618s testsuite/MDAnalysisTests/lib/test_log.py::TestProgressBar::test_disable PASSED [ 51%] 618s testsuite/MDAnalysisTests/lib/test_log.py::TestProgressBar::test_verbose_disable PASSED [ 51%] 619s testsuite/MDAnalysisTests/lib/test_neighborsearch.py::test_search PASSED [ 51%] 619s testsuite/MDAnalysisTests/lib/test_neighborsearch.py::test_zero PASSED [ 51%] 619s testsuite/MDAnalysisTests/lib/test_nsgrid.py::test_pbc_box[box0] PASSED [ 51%] 619s testsuite/MDAnalysisTests/lib/test_nsgrid.py::test_pbc_box[box1] PASSED [ 51%] 619s testsuite/MDAnalysisTests/lib/test_nsgrid.py::test_pbc_box[box2] PASSED [ 51%] 619s testsuite/MDAnalysisTests/lib/test_nsgrid.py::test_pbc_box[box3] PASSED [ 51%] 619s testsuite/MDAnalysisTests/lib/test_nsgrid.py::test_pbc_box[box4] PASSED [ 51%] 619s testsuite/MDAnalysisTests/lib/test_nsgrid.py::test_nsgrid_badcutoff[-4-Cutoff must be positive] PASSED [ 51%] 619s testsuite/MDAnalysisTests/lib/test_nsgrid.py::test_nsgrid_badcutoff[100000-Cutoff 100000 too large for box] PASSED [ 51%] 620s testsuite/MDAnalysisTests/lib/test_nsgrid.py::test_ns_grid_noneighbor PASSED [ 51%] 620s testsuite/MDAnalysisTests/lib/test_nsgrid.py::test_nsgrid_PBC_rect PASSED [ 51%] 620s testsuite/MDAnalysisTests/lib/test_nsgrid.py::test_nsgrid_PBC PASSED [ 51%] 620s testsuite/MDAnalysisTests/lib/test_nsgrid.py::test_nsgrid_pairs PASSED [ 51%] 621s testsuite/MDAnalysisTests/lib/test_nsgrid.py::test_nsgrid_pair_distances PASSED [ 52%] 621s testsuite/MDAnalysisTests/lib/test_nsgrid.py::test_nsgrid_distances PASSED [ 52%] 621s testsuite/MDAnalysisTests/lib/test_nsgrid.py::test_nsgrid_search[None-results0] PASSED [ 52%] 621s testsuite/MDAnalysisTests/lib/test_nsgrid.py::test_nsgrid_search[box1-results1] PASSED [ 52%] 621s testsuite/MDAnalysisTests/lib/test_nsgrid.py::test_nsgrid_search[box2-results2] PASSED [ 52%] 621s testsuite/MDAnalysisTests/lib/test_nsgrid.py::test_nsgrid_selfsearch[None-21] PASSED [ 52%] 621s testsuite/MDAnalysisTests/lib/test_nsgrid.py::test_nsgrid_selfsearch[box1-21] PASSED [ 52%] 621s testsuite/MDAnalysisTests/lib/test_nsgrid.py::test_nsgrid_selfsearch[box2-26] PASSED [ 52%] 621s testsuite/MDAnalysisTests/lib/test_nsgrid.py::test_nsgrid_selfsearch[box3-33] PASSED [ 52%] 621s testsuite/MDAnalysisTests/lib/test_nsgrid.py::test_nsgrid_probe_close_to_box_boundary PASSED [ 52%] 621s testsuite/MDAnalysisTests/lib/test_nsgrid.py::test_zero_max_dist PASSED [ 52%] 622s testsuite/MDAnalysisTests/lib/test_nsgrid.py::test_around_res PASSED [ 52%] 622s testsuite/MDAnalysisTests/lib/test_nsgrid.py::test_around_overlapping PASSED [ 52%] 622s testsuite/MDAnalysisTests/lib/test_nsgrid.py::test_issue_2229_part1 PASSED [ 52%] 622s testsuite/MDAnalysisTests/lib/test_nsgrid.py::test_issue_2229_part2 PASSED [ 52%] 622s testsuite/MDAnalysisTests/lib/test_nsgrid.py::test_issue_2919 PASSED [ 52%] 622s testsuite/MDAnalysisTests/lib/test_nsgrid.py::test_issue_2345 PASSED [ 52%] 623s testsuite/MDAnalysisTests/lib/test_nsgrid.py::test_issue_2670 PASSED [ 52%] 623s testsuite/MDAnalysisTests/lib/test_nsgrid.py::test_issue_3183 SKIPPED [ 52%] 623s testsuite/MDAnalysisTests/lib/test_pkdtree.py::test_setcoords[None-1.0-Donot provide cutoff distance for non PBC aware calculations] PASSED [ 52%] 623s testsuite/MDAnalysisTests/lib/test_pkdtree.py::test_setcoords[b1-None-Provide a cutoff distance with tree.set_coords(...)] PASSED [ 52%] 623s testsuite/MDAnalysisTests/lib/test_pkdtree.py::test_searchfail PASSED [ 52%] 623s testsuite/MDAnalysisTests/lib/test_pkdtree.py::test_search[b0-q0-result0] PASSED [ 52%] 623s testsuite/MDAnalysisTests/lib/test_pkdtree.py::test_search[b1-q1-result1] PASSED [ 52%] 623s testsuite/MDAnalysisTests/lib/test_pkdtree.py::test_search[b2-q2-result2] PASSED [ 52%] 623s testsuite/MDAnalysisTests/lib/test_pkdtree.py::test_nopbc PASSED [ 52%] 623s testsuite/MDAnalysisTests/lib/test_pkdtree.py::test_searchpairs[b0-2.0-result0] PASSED [ 52%] 623s testsuite/MDAnalysisTests/lib/test_pkdtree.py::test_searchpairs[b1-2.0-result1] PASSED [ 52%] 623s testsuite/MDAnalysisTests/lib/test_pkdtree.py::test_searchpairs[b2-4.5-Set cutoff greater or equal to the radius.] PASSED [ 52%] 623s testsuite/MDAnalysisTests/lib/test_pkdtree.py::test_searchpairs[b3-0.1-result3] PASSED [ 52%] 623s testsuite/MDAnalysisTests/lib/test_pkdtree.py::test_ckd_searchpairs_nopbc[0.1-result0] PASSED [ 52%] 623s testsuite/MDAnalysisTests/lib/test_pkdtree.py::test_ckd_searchpairs_nopbc[0.3-result1] PASSED [ 52%] 623s testsuite/MDAnalysisTests/lib/test_pkdtree.py::test_searchtree[b0-q0-result0] PASSED [ 52%] 623s testsuite/MDAnalysisTests/lib/test_pkdtree.py::test_searchtree[b1-q1-result1] PASSED [ 52%] 623s testsuite/MDAnalysisTests/lib/test_pkdtree.py::test_searchtree[b2-q2-result2] PASSED [ 52%] 623s testsuite/MDAnalysisTests/lib/test_pkdtree.py::test_searchtree[b3-q3-result3] PASSED [ 52%] 623s testsuite/MDAnalysisTests/lib/test_qcprot.py::TestQCProt::test_dummy[float64] PASSED [ 52%] 623s testsuite/MDAnalysisTests/lib/test_qcprot.py::TestQCProt::test_dummy[float32] PASSED [ 52%] 623s testsuite/MDAnalysisTests/lib/test_qcprot.py::TestQCProt::test_regression[float64] PASSED [ 52%] 623s testsuite/MDAnalysisTests/lib/test_qcprot.py::TestQCProt::test_regression[float32] PASSED [ 52%] 623s testsuite/MDAnalysisTests/lib/test_util.py::test_absence_cutil PASSED [ 52%] 623s testsuite/MDAnalysisTests/lib/test_util.py::test_presence_cutil PASSED [ 52%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestStringFunctions::test_parse_residue[LYS300:HZ1-residue0] PASSED [ 52%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestStringFunctions::test_parse_residue[K300:HZ1-residue1] PASSED [ 52%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestStringFunctions::test_parse_residue[K300-residue2] PASSED [ 52%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestStringFunctions::test_parse_residue[LYS 300:HZ1-residue3] PASSED [ 52%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestStringFunctions::test_parse_residue[M1:CA-residue4] PASSED [ 52%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestStringFunctions::test_parse_residue_ValueError PASSED [ 52%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestStringFunctions::test_convert_aa_3to1[HIS-H] PASSED [ 52%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestStringFunctions::test_convert_aa_3to1[HISA-H] PASSED [ 52%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestStringFunctions::test_convert_aa_3to1[HISB-H] PASSED [ 52%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestStringFunctions::test_convert_aa_3to1[HSE-H] PASSED [ 52%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestStringFunctions::test_convert_aa_3to1[HSD-H] PASSED [ 52%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestStringFunctions::test_convert_aa_3to1[HIS1-H] PASSED [ 52%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestStringFunctions::test_convert_aa_3to1[HIS2-H] PASSED [ 52%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestStringFunctions::test_convert_aa_3to1[HIE-H] PASSED [ 52%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestStringFunctions::test_convert_aa_3to1[HID-H] PASSED [ 52%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestStringFunctions::test_convert_aa_3to1[LYS-K] PASSED [ 52%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestStringFunctions::test_convert_aa_3to1[LYSH-K] PASSED [ 52%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestStringFunctions::test_convert_aa_3to1[LYN-K] PASSED [ 52%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestStringFunctions::test_convert_aa_3to1[ALA-A] PASSED [ 52%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestStringFunctions::test_convert_aa_3to1[ASP-D] PASSED [ 52%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestStringFunctions::test_convert_aa_3to1[ASPH-D] PASSED [ 52%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestStringFunctions::test_convert_aa_3to1[ASH-D] PASSED [ 52%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestStringFunctions::test_convert_aa_3to1[GLU-E] PASSED [ 52%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestStringFunctions::test_convert_aa_3to1[GLUH-E] PASSED [ 52%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestStringFunctions::test_convert_aa_3to1[GLH-E] PASSED [ 52%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestStringFunctions::test_convert_aa_3to1[ASN-N] PASSED [ 52%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestStringFunctions::test_convert_aa_3to1[GLN-Q] PASSED [ 52%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestStringFunctions::test_convert_aa_3to1[CYS-C] PASSED [ 52%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestStringFunctions::test_convert_aa_3to1[CYSH-C] PASSED [ 52%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestStringFunctions::test_convert_aa_3to1[CYS1-C] PASSED [ 52%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestStringFunctions::test_convert_aa_3to1[CYS2-C] PASSED [ 52%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestStringFunctions::test_convert_aa_1to3[H-strings0] PASSED [ 52%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestStringFunctions::test_convert_aa_1to3[K-strings1] PASSED [ 52%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestStringFunctions::test_convert_aa_1to3[A-strings2] PASSED [ 52%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestStringFunctions::test_convert_aa_1to3[D-strings3] PASSED [ 52%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestStringFunctions::test_convert_aa_1to3[E-strings4] PASSED [ 52%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestStringFunctions::test_convert_aa_1to3[N-strings5] PASSED [ 52%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestStringFunctions::test_convert_aa_1to3[Q-strings6] PASSED [ 52%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestStringFunctions::test_convert_aa_1to3[C-strings7] PASSED [ 52%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestStringFunctions::test_ValueError[XYZXYZ] PASSED [ 52%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestStringFunctions::test_ValueError[\xa3] PASSED [ 52%] 623s testsuite/MDAnalysisTests/lib/test_util.py::test_greedy_splitext PASSED [ 52%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestFilename::test_string[foo.psf-None-False-foo.psf] PASSED [ 52%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestFilename::test_string[foo.psf-pdb-False-foo.pdb] PASSED [ 52%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestFilename::test_string[foo.psf-pdb-True-foo.psf] PASSED [ 52%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestFilename::test_string[foo-pdb-False-foo.pdb] PASSED [ 52%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestFilename::test_string[foo-pdb-True-foo.pdb] PASSED [ 52%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestFilename::test_named_stream PASSED [ 52%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestGeometryFunctions::test_vectors[x_axis0-y_axis0-1.5707963267948966] PASSED [ 52%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestGeometryFunctions::test_vectors[x_axis1-y_axis1-1.0471975511965976] PASSED [ 52%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestGeometryFunctions::test_vectors[x_axis2-y_axis2-1.5707963267948966] PASSED [ 52%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestGeometryFunctions::test_vectors[x_axis3-y_axis3-1.5707963267948966] PASSED [ 52%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestGeometryFunctions::test_vectors[x_axis4-y_axis4-1.0471975511965976] PASSED [ 52%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestGeometryFunctions::test_vectors[x_axis5-y_axis5-nan] PASSED [ 52%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestGeometryFunctions::test_vectors[x_axis6-y_axis6-0.0] PASSED [ 52%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestGeometryFunctions::test_angle_pi[x_axis0-y_axis0-3.141592653589793] PASSED [ 52%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestGeometryFunctions::test_angle_pi[x_axis1-y_axis1-0.0] PASSED [ 52%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestGeometryFunctions::test_angle_range[0.0] PASSED [ 52%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestGeometryFunctions::test_angle_range[0.16534698176788384] PASSED [ 52%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestGeometryFunctions::test_angle_range[0.3306939635357677] PASSED [ 52%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestGeometryFunctions::test_angle_range[0.4960409453036515] PASSED [ 52%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestGeometryFunctions::test_angle_range[0.6613879270715354] PASSED [ 52%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestGeometryFunctions::test_angle_range[0.8267349088394192] PASSED [ 52%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestGeometryFunctions::test_angle_range[0.992081890607303] PASSED [ 52%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestGeometryFunctions::test_angle_range[1.1574288723751869] PASSED [ 52%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestGeometryFunctions::test_angle_range[1.3227758541430708] PASSED [ 52%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestGeometryFunctions::test_angle_range[1.4881228359109546] PASSED [ 52%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestGeometryFunctions::test_angle_range[1.6534698176788385] PASSED [ 52%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestGeometryFunctions::test_angle_range[1.8188167994467224] PASSED [ 52%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestGeometryFunctions::test_angle_range[1.984163781214606] PASSED [ 52%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestGeometryFunctions::test_angle_range[2.14951076298249] PASSED [ 52%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestGeometryFunctions::test_angle_range[2.3148577447503738] PASSED [ 52%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestGeometryFunctions::test_angle_range[2.4802047265182576] PASSED [ 52%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestGeometryFunctions::test_angle_range[2.6455517082861415] PASSED [ 52%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestGeometryFunctions::test_angle_range[2.8108986900540254] PASSED [ 52%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestGeometryFunctions::test_angle_range[2.9762456718219092] PASSED [ 52%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestGeometryFunctions::test_angle_range[3.141592653589793] PASSED [ 52%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestGeometryFunctions::test_norm[vector0-1] PASSED [ 52%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestGeometryFunctions::test_norm[vector1-1.0] PASSED [ 52%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestGeometryFunctions::test_norm[vector2-0.0] PASSED [ 52%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestGeometryFunctions::test_norm_range[0.0] PASSED [ 52%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestGeometryFunctions::test_norm_range[0.16534698176788384] PASSED [ 52%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestGeometryFunctions::test_norm_range[0.3306939635357677] PASSED [ 52%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestGeometryFunctions::test_norm_range[0.4960409453036515] PASSED [ 52%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestGeometryFunctions::test_norm_range[0.6613879270715354] PASSED [ 52%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestGeometryFunctions::test_norm_range[0.8267349088394192] PASSED [ 52%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestGeometryFunctions::test_norm_range[0.992081890607303] PASSED [ 52%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestGeometryFunctions::test_norm_range[1.1574288723751869] PASSED [ 52%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestGeometryFunctions::test_norm_range[1.3227758541430708] PASSED [ 52%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestGeometryFunctions::test_norm_range[1.4881228359109546] PASSED [ 52%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestGeometryFunctions::test_norm_range[1.6534698176788385] PASSED [ 52%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestGeometryFunctions::test_norm_range[1.8188167994467224] PASSED [ 52%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestGeometryFunctions::test_norm_range[1.984163781214606] PASSED [ 52%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestGeometryFunctions::test_norm_range[2.14951076298249] PASSED [ 52%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestGeometryFunctions::test_norm_range[2.3148577447503738] PASSED [ 52%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestGeometryFunctions::test_norm_range[2.4802047265182576] PASSED [ 52%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestGeometryFunctions::test_norm_range[2.6455517082861415] PASSED [ 52%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestGeometryFunctions::test_norm_range[2.8108986900540254] PASSED [ 52%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestGeometryFunctions::test_norm_range[2.9762456718219092] PASSED [ 52%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestGeometryFunctions::test_norm_range[3.141592653589793] PASSED [ 52%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestGeometryFunctions::test_normal[vec10-vec20-value0] PASSED [ 52%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestGeometryFunctions::test_normal[vec11-vec21-0.0] PASSED [ 52%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestGeometryFunctions::test_angle_lower_clip PASSED [ 52%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestGeometryFunctions::test_stp PASSED [ 52%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestGeometryFunctions::test_dihedral PASSED [ 52%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestGeometryFunctions::test_pdot PASSED [ 52%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestGeometryFunctions::test_pnorm PASSED [ 52%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles0-lengths0] PASSED [ 52%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles0-lengths1] PASSED [ 52%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles0-lengths2] PASSED [ 52%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles0-lengths3] PASSED [ 52%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles0-lengths4] PASSED [ 52%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles0-lengths5] PASSED [ 52%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles0-lengths6] PASSED [ 52%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles0-lengths7] PASSED [ 52%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles0-lengths8] PASSED [ 52%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles0-lengths9] PASSED [ 52%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles0-lengths10] PASSED [ 52%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles0-lengths11] PASSED [ 52%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles0-lengths12] PASSED [ 52%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles0-lengths13] PASSED [ 52%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles0-lengths14] PASSED [ 52%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles0-lengths15] PASSED [ 52%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles0-lengths16] PASSED [ 52%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles0-lengths17] PASSED [ 52%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles0-lengths18] PASSED [ 52%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles0-lengths19] PASSED [ 52%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles1-lengths0] PASSED [ 52%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles1-lengths1] PASSED [ 52%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles1-lengths2] PASSED [ 52%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles1-lengths3] PASSED [ 52%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles1-lengths4] PASSED [ 52%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles1-lengths5] PASSED [ 52%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles1-lengths6] PASSED [ 52%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles1-lengths7] PASSED [ 52%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles1-lengths8] PASSED [ 52%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles1-lengths9] PASSED [ 52%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles1-lengths10] PASSED [ 52%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles1-lengths11] PASSED [ 52%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles1-lengths12] PASSED [ 52%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles1-lengths13] PASSED [ 52%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles1-lengths14] PASSED [ 52%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles1-lengths15] PASSED [ 52%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles1-lengths16] PASSED [ 53%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles1-lengths17] PASSED [ 53%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles1-lengths18] PASSED [ 53%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles1-lengths19] PASSED [ 53%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles2-lengths0] PASSED [ 53%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles2-lengths1] PASSED [ 53%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles2-lengths2] PASSED [ 53%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles2-lengths3] PASSED [ 53%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles2-lengths4] PASSED [ 53%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles2-lengths5] PASSED [ 53%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles2-lengths6] PASSED [ 53%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles2-lengths7] PASSED [ 53%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles2-lengths8] PASSED [ 53%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles2-lengths9] PASSED [ 53%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles2-lengths10] PASSED [ 53%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles2-lengths11] PASSED [ 53%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles2-lengths12] PASSED [ 53%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles2-lengths13] PASSED [ 53%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles2-lengths14] PASSED [ 53%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles2-lengths15] PASSED [ 53%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles2-lengths16] PASSED [ 53%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles2-lengths17] PASSED [ 53%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles2-lengths18] PASSED [ 53%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles2-lengths19] PASSED [ 53%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles3-lengths0] PASSED [ 53%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles3-lengths1] PASSED [ 53%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles3-lengths2] PASSED [ 53%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles3-lengths3] PASSED [ 53%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles3-lengths4] PASSED [ 53%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles3-lengths5] PASSED [ 53%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles3-lengths6] PASSED [ 53%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles3-lengths7] PASSED [ 53%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles3-lengths8] PASSED [ 53%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles3-lengths9] PASSED [ 53%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles3-lengths10] PASSED [ 53%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles3-lengths11] PASSED [ 53%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles3-lengths12] PASSED [ 53%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles3-lengths13] PASSED [ 53%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles3-lengths14] PASSED [ 53%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles3-lengths15] PASSED [ 53%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles3-lengths16] PASSED [ 53%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles3-lengths17] PASSED [ 53%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles3-lengths18] PASSED [ 53%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles3-lengths19] PASSED [ 53%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles4-lengths0] PASSED [ 53%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles4-lengths1] PASSED [ 53%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles4-lengths2] PASSED [ 53%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles4-lengths3] PASSED [ 53%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles4-lengths4] PASSED [ 53%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles4-lengths5] PASSED [ 53%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles4-lengths6] PASSED [ 53%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles4-lengths7] PASSED [ 53%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles4-lengths8] PASSED [ 53%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles4-lengths9] PASSED [ 53%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles4-lengths10] PASSED [ 53%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles4-lengths11] PASSED [ 53%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles4-lengths12] PASSED [ 53%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles4-lengths13] PASSED [ 53%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles4-lengths14] PASSED [ 53%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles4-lengths15] PASSED [ 53%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles4-lengths16] PASSED [ 53%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles4-lengths17] PASSED [ 53%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles4-lengths18] PASSED [ 53%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles4-lengths19] PASSED [ 53%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles5-lengths0] PASSED [ 53%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles5-lengths1] PASSED [ 53%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles5-lengths2] PASSED [ 53%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles5-lengths3] PASSED [ 53%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles5-lengths4] PASSED [ 53%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles5-lengths5] PASSED [ 53%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles5-lengths6] PASSED [ 53%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles5-lengths7] PASSED [ 53%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles5-lengths8] PASSED [ 53%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles5-lengths9] PASSED [ 53%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles5-lengths10] PASSED [ 53%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles5-lengths11] PASSED [ 53%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles5-lengths12] PASSED [ 53%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles5-lengths13] PASSED [ 53%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles5-lengths14] PASSED [ 53%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles5-lengths15] PASSED [ 53%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles5-lengths16] PASSED [ 53%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles5-lengths17] PASSED [ 53%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles5-lengths18] PASSED [ 53%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles5-lengths19] PASSED [ 53%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles6-lengths0] PASSED [ 53%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles6-lengths1] PASSED [ 53%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles6-lengths2] PASSED [ 53%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles6-lengths3] PASSED [ 53%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles6-lengths4] PASSED [ 53%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles6-lengths5] PASSED [ 53%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles6-lengths6] PASSED [ 53%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles6-lengths7] PASSED [ 53%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles6-lengths8] PASSED [ 53%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles6-lengths9] PASSED [ 53%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles6-lengths10] PASSED [ 53%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles6-lengths11] PASSED [ 53%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles6-lengths12] PASSED [ 53%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles6-lengths13] PASSED [ 53%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles6-lengths14] PASSED [ 53%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles6-lengths15] PASSED [ 53%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles6-lengths16] PASSED [ 53%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles6-lengths17] PASSED [ 53%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles6-lengths18] PASSED [ 53%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles6-lengths19] PASSED [ 53%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles7-lengths0] PASSED [ 53%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles7-lengths1] PASSED [ 53%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles7-lengths2] PASSED [ 53%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles7-lengths3] PASSED [ 53%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles7-lengths4] PASSED [ 53%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles7-lengths5] PASSED [ 53%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles7-lengths6] PASSED [ 53%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles7-lengths7] PASSED [ 53%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles7-lengths8] PASSED [ 53%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles7-lengths9] PASSED [ 53%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles7-lengths10] PASSED [ 53%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles7-lengths11] PASSED [ 53%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles7-lengths12] PASSED [ 53%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles7-lengths13] PASSED [ 53%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles7-lengths14] PASSED [ 53%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles7-lengths15] PASSED [ 53%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles7-lengths16] PASSED [ 53%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles7-lengths17] PASSED [ 53%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles7-lengths18] PASSED [ 53%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles7-lengths19] PASSED [ 53%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles8-lengths0] PASSED [ 53%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles8-lengths1] PASSED [ 53%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles8-lengths2] PASSED [ 53%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles8-lengths3] PASSED [ 53%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles8-lengths4] PASSED [ 53%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles8-lengths5] PASSED [ 53%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles8-lengths6] PASSED [ 53%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles8-lengths7] PASSED [ 53%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles8-lengths8] PASSED [ 53%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles8-lengths9] PASSED [ 53%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles8-lengths10] PASSED [ 53%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles8-lengths11] PASSED [ 53%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles8-lengths12] PASSED [ 53%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles8-lengths13] PASSED [ 53%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles8-lengths14] PASSED [ 53%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles8-lengths15] PASSED [ 53%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles8-lengths16] PASSED [ 53%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles8-lengths17] PASSED [ 53%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles8-lengths18] PASSED [ 53%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles8-lengths19] PASSED [ 53%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles9-lengths0] PASSED [ 53%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles9-lengths1] PASSED [ 53%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles9-lengths2] PASSED [ 53%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles9-lengths3] PASSED [ 53%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles9-lengths4] PASSED [ 53%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles9-lengths5] PASSED [ 53%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles9-lengths6] PASSED [ 53%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles9-lengths7] PASSED [ 53%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles9-lengths8] PASSED [ 53%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles9-lengths9] PASSED [ 53%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles9-lengths10] PASSED [ 53%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles9-lengths11] PASSED [ 53%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles9-lengths12] PASSED [ 53%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles9-lengths13] PASSED [ 53%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles9-lengths14] PASSED [ 53%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles9-lengths15] PASSED [ 53%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles9-lengths16] PASSED [ 53%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles9-lengths17] PASSED [ 53%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles9-lengths18] PASSED [ 53%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles9-lengths19] PASSED [ 53%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles10-lengths0] PASSED [ 53%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles10-lengths1] PASSED [ 53%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles10-lengths2] PASSED [ 53%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles10-lengths3] PASSED [ 53%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles10-lengths4] PASSED [ 53%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles10-lengths5] PASSED [ 53%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles10-lengths6] PASSED [ 53%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles10-lengths7] PASSED [ 53%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles10-lengths8] PASSED [ 53%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles10-lengths9] PASSED [ 53%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles10-lengths10] PASSED [ 53%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles10-lengths11] PASSED [ 53%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles10-lengths12] PASSED [ 53%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles10-lengths13] PASSED [ 53%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles10-lengths14] PASSED [ 53%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles10-lengths15] PASSED [ 53%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles10-lengths16] PASSED [ 53%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles10-lengths17] PASSED [ 53%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles10-lengths18] PASSED [ 53%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles10-lengths19] PASSED [ 53%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles11-lengths0] PASSED [ 54%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles11-lengths1] PASSED [ 54%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles11-lengths2] PASSED [ 54%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles11-lengths3] PASSED [ 54%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles11-lengths4] PASSED [ 54%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles11-lengths5] PASSED [ 54%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles11-lengths6] PASSED [ 54%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles11-lengths7] PASSED [ 54%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles11-lengths8] PASSED [ 54%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles11-lengths9] PASSED [ 54%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles11-lengths10] PASSED [ 54%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles11-lengths11] PASSED [ 54%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles11-lengths12] PASSED [ 54%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles11-lengths13] PASSED [ 54%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles11-lengths14] PASSED [ 54%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles11-lengths15] PASSED [ 54%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles11-lengths16] PASSED [ 54%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles11-lengths17] PASSED [ 54%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles11-lengths18] PASSED [ 54%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles11-lengths19] PASSED [ 54%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles12-lengths0] PASSED [ 54%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles12-lengths1] PASSED [ 54%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles12-lengths2] PASSED [ 54%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles12-lengths3] PASSED [ 54%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles12-lengths4] PASSED [ 54%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles12-lengths5] PASSED [ 54%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles12-lengths6] PASSED [ 54%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles12-lengths7] PASSED [ 54%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles12-lengths8] PASSED [ 54%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles12-lengths9] PASSED [ 54%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles12-lengths10] PASSED [ 54%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles12-lengths11] PASSED [ 54%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles12-lengths12] PASSED [ 54%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles12-lengths13] PASSED [ 54%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles12-lengths14] PASSED [ 54%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles12-lengths15] PASSED [ 54%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles12-lengths16] PASSED [ 54%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles12-lengths17] PASSED [ 54%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles12-lengths18] PASSED [ 54%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles12-lengths19] PASSED [ 54%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles13-lengths0] PASSED [ 54%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles13-lengths1] PASSED [ 54%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles13-lengths2] PASSED [ 54%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles13-lengths3] PASSED [ 54%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles13-lengths4] PASSED [ 54%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles13-lengths5] PASSED [ 54%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles13-lengths6] PASSED [ 54%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles13-lengths7] PASSED [ 54%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles13-lengths8] PASSED [ 54%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles13-lengths9] PASSED [ 54%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles13-lengths10] PASSED [ 54%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles13-lengths11] PASSED [ 54%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles13-lengths12] PASSED [ 54%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles13-lengths13] PASSED [ 54%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles13-lengths14] PASSED [ 54%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles13-lengths15] PASSED [ 54%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles13-lengths16] PASSED [ 54%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles13-lengths17] PASSED [ 54%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles13-lengths18] PASSED [ 54%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles13-lengths19] PASSED [ 54%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles14-lengths0] PASSED [ 54%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles14-lengths1] PASSED [ 54%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles14-lengths2] PASSED [ 54%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles14-lengths3] PASSED [ 54%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles14-lengths4] PASSED [ 54%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles14-lengths5] PASSED [ 54%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles14-lengths6] PASSED [ 54%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles14-lengths7] PASSED [ 54%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles14-lengths8] PASSED [ 54%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles14-lengths9] PASSED [ 54%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles14-lengths10] PASSED [ 54%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles14-lengths11] PASSED [ 54%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles14-lengths12] PASSED [ 54%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles14-lengths13] PASSED [ 54%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles14-lengths14] PASSED [ 54%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles14-lengths15] PASSED [ 54%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles14-lengths16] PASSED [ 54%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles14-lengths17] PASSED [ 54%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles14-lengths18] PASSED [ 54%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles14-lengths19] PASSED [ 54%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles15-lengths0] PASSED [ 54%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles15-lengths1] PASSED [ 54%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles15-lengths2] PASSED [ 54%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles15-lengths3] PASSED [ 54%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles15-lengths4] PASSED [ 54%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles15-lengths5] PASSED [ 54%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles15-lengths6] PASSED [ 54%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles15-lengths7] PASSED [ 54%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles15-lengths8] PASSED [ 54%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles15-lengths9] PASSED [ 54%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles15-lengths10] PASSED [ 54%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles15-lengths11] PASSED [ 54%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles15-lengths12] PASSED [ 54%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles15-lengths13] PASSED [ 54%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles15-lengths14] PASSED [ 54%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles15-lengths15] PASSED [ 54%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles15-lengths16] PASSED [ 54%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles15-lengths17] PASSED [ 54%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles15-lengths18] PASSED [ 54%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles15-lengths19] PASSED [ 54%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles16-lengths0] PASSED [ 54%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles16-lengths1] PASSED [ 54%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles16-lengths2] PASSED [ 54%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles16-lengths3] PASSED [ 54%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles16-lengths4] PASSED [ 54%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles16-lengths5] PASSED [ 54%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles16-lengths6] PASSED [ 54%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles16-lengths7] PASSED [ 54%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles16-lengths8] PASSED [ 54%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles16-lengths9] PASSED [ 54%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles16-lengths10] PASSED [ 54%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles16-lengths11] PASSED [ 54%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles16-lengths12] PASSED [ 54%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles16-lengths13] PASSED [ 54%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles16-lengths14] PASSED [ 54%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles16-lengths15] PASSED [ 54%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles16-lengths16] PASSED [ 54%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles16-lengths17] PASSED [ 54%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles16-lengths18] PASSED [ 54%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles16-lengths19] PASSED [ 54%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles17-lengths0] PASSED [ 54%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles17-lengths1] PASSED [ 54%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles17-lengths2] PASSED [ 54%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles17-lengths3] PASSED [ 54%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles17-lengths4] PASSED [ 54%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles17-lengths5] PASSED [ 54%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles17-lengths6] PASSED [ 54%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles17-lengths7] PASSED [ 54%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles17-lengths8] PASSED [ 54%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles17-lengths9] PASSED [ 54%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles17-lengths10] PASSED [ 54%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles17-lengths11] PASSED [ 54%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles17-lengths12] PASSED [ 54%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles17-lengths13] PASSED [ 54%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles17-lengths14] PASSED [ 54%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles17-lengths15] PASSED [ 54%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles17-lengths16] PASSED [ 54%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles17-lengths17] PASSED [ 54%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles17-lengths18] PASSED [ 54%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles17-lengths19] PASSED [ 54%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles18-lengths0] PASSED [ 54%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles18-lengths1] PASSED [ 54%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles18-lengths2] PASSED [ 54%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles18-lengths3] PASSED [ 54%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles18-lengths4] PASSED [ 54%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles18-lengths5] PASSED [ 54%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles18-lengths6] PASSED [ 54%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles18-lengths7] PASSED [ 54%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles18-lengths8] PASSED [ 54%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles18-lengths9] PASSED [ 54%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles18-lengths10] PASSED [ 54%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles18-lengths11] PASSED [ 54%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles18-lengths12] PASSED [ 54%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles18-lengths13] PASSED [ 54%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles18-lengths14] PASSED [ 54%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles18-lengths15] PASSED [ 54%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles18-lengths16] PASSED [ 54%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles18-lengths17] PASSED [ 54%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles18-lengths18] PASSED [ 54%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles18-lengths19] PASSED [ 54%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles19-lengths0] PASSED [ 54%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles19-lengths1] PASSED [ 54%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles19-lengths2] PASSED [ 54%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles19-lengths3] PASSED [ 54%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles19-lengths4] PASSED [ 54%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles19-lengths5] PASSED [ 54%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles19-lengths6] PASSED [ 54%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles19-lengths7] PASSED [ 54%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles19-lengths8] PASSED [ 54%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles19-lengths9] PASSED [ 54%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles19-lengths10] PASSED [ 54%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles19-lengths11] PASSED [ 54%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles19-lengths12] PASSED [ 54%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles19-lengths13] PASSED [ 54%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles19-lengths14] PASSED [ 54%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles19-lengths15] PASSED [ 54%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles19-lengths16] PASSED [ 54%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles19-lengths17] PASSED [ 54%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles19-lengths18] PASSED [ 54%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles19-lengths19] PASSED [ 54%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles20-lengths0] PASSED [ 54%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles20-lengths1] PASSED [ 54%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles20-lengths2] PASSED [ 54%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles20-lengths3] PASSED [ 54%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles20-lengths4] PASSED [ 55%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles20-lengths5] PASSED [ 55%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles20-lengths6] PASSED [ 55%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles20-lengths7] PASSED [ 55%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles20-lengths8] PASSED [ 55%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles20-lengths9] PASSED [ 55%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles20-lengths10] PASSED [ 55%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles20-lengths11] PASSED [ 55%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles20-lengths12] PASSED [ 55%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles20-lengths13] PASSED [ 55%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles20-lengths14] PASSED [ 55%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles20-lengths15] PASSED [ 55%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles20-lengths16] PASSED [ 55%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles20-lengths17] PASSED [ 55%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles20-lengths18] PASSED [ 55%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles20-lengths19] PASSED [ 55%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles21-lengths0] PASSED [ 55%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles21-lengths1] PASSED [ 55%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles21-lengths2] PASSED [ 55%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles21-lengths3] PASSED [ 55%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles21-lengths4] PASSED [ 55%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles21-lengths5] PASSED [ 55%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles21-lengths6] PASSED [ 55%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles21-lengths7] PASSED [ 55%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles21-lengths8] PASSED [ 55%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles21-lengths9] PASSED [ 55%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles21-lengths10] PASSED [ 55%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles21-lengths11] PASSED [ 55%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles21-lengths12] PASSED [ 55%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles21-lengths13] PASSED [ 55%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles21-lengths14] PASSED [ 55%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles21-lengths15] PASSED [ 55%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles21-lengths16] PASSED [ 55%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles21-lengths17] PASSED [ 55%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles21-lengths18] PASSED [ 55%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles21-lengths19] PASSED [ 55%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles22-lengths0] PASSED [ 55%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles22-lengths1] PASSED [ 55%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles22-lengths2] PASSED [ 55%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles22-lengths3] PASSED [ 55%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles22-lengths4] PASSED [ 55%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles22-lengths5] PASSED [ 55%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles22-lengths6] PASSED [ 55%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles22-lengths7] PASSED [ 55%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles22-lengths8] PASSED [ 55%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles22-lengths9] PASSED [ 55%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles22-lengths10] PASSED [ 55%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles22-lengths11] PASSED [ 55%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles22-lengths12] PASSED [ 55%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles22-lengths13] PASSED [ 55%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles22-lengths14] PASSED [ 55%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles22-lengths15] PASSED [ 55%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles22-lengths16] PASSED [ 55%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles22-lengths17] PASSED [ 55%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles22-lengths18] PASSED [ 55%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles22-lengths19] PASSED [ 55%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles23-lengths0] PASSED [ 55%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles23-lengths1] PASSED [ 55%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles23-lengths2] PASSED [ 55%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles23-lengths3] PASSED [ 55%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles23-lengths4] PASSED [ 55%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles23-lengths5] PASSED [ 55%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles23-lengths6] PASSED [ 55%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles23-lengths7] PASSED [ 55%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles23-lengths8] PASSED [ 55%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles23-lengths9] PASSED [ 55%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles23-lengths10] PASSED [ 55%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles23-lengths11] PASSED [ 55%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles23-lengths12] PASSED [ 55%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles23-lengths13] PASSED [ 55%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles23-lengths14] PASSED [ 55%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles23-lengths15] PASSED [ 55%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles23-lengths16] PASSED [ 55%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles23-lengths17] PASSED [ 55%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles23-lengths18] PASSED [ 55%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles23-lengths19] PASSED [ 55%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles24-lengths0] PASSED [ 55%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles24-lengths1] PASSED [ 55%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles24-lengths2] PASSED [ 55%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles24-lengths3] PASSED [ 55%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles24-lengths4] PASSED [ 55%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles24-lengths5] PASSED [ 55%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles24-lengths6] PASSED [ 55%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles24-lengths7] PASSED [ 55%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles24-lengths8] PASSED [ 55%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles24-lengths9] PASSED [ 55%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles24-lengths10] PASSED [ 55%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles24-lengths11] PASSED [ 55%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles24-lengths12] PASSED [ 55%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles24-lengths13] PASSED [ 55%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles24-lengths14] PASSED [ 55%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles24-lengths15] PASSED [ 55%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles24-lengths16] PASSED [ 55%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles24-lengths17] PASSED [ 55%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles24-lengths18] PASSED [ 55%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles24-lengths19] PASSED [ 55%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles25-lengths0] PASSED [ 55%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles25-lengths1] PASSED [ 55%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles25-lengths2] PASSED [ 55%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles25-lengths3] PASSED [ 55%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles25-lengths4] PASSED [ 55%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles25-lengths5] PASSED [ 55%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles25-lengths6] PASSED [ 55%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles25-lengths7] PASSED [ 55%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles25-lengths8] PASSED [ 55%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles25-lengths9] PASSED [ 55%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles25-lengths10] PASSED [ 55%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles25-lengths11] PASSED [ 55%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles25-lengths12] PASSED [ 55%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles25-lengths13] PASSED [ 55%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles25-lengths14] PASSED [ 55%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles25-lengths15] PASSED [ 55%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles25-lengths16] PASSED [ 55%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles25-lengths17] PASSED [ 55%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles25-lengths18] PASSED [ 55%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles25-lengths19] PASSED [ 55%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles26-lengths0] PASSED [ 55%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles26-lengths1] PASSED [ 55%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles26-lengths2] PASSED [ 55%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles26-lengths3] PASSED [ 55%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles26-lengths4] PASSED [ 55%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles26-lengths5] PASSED [ 55%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles26-lengths6] PASSED [ 55%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles26-lengths7] PASSED [ 55%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles26-lengths8] PASSED [ 55%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles26-lengths9] PASSED [ 55%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles26-lengths10] PASSED [ 55%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles26-lengths11] PASSED [ 55%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles26-lengths12] PASSED [ 55%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles26-lengths13] PASSED [ 55%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles26-lengths14] PASSED [ 55%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles26-lengths15] PASSED [ 55%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles26-lengths16] PASSED [ 55%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles26-lengths17] PASSED [ 55%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles26-lengths18] PASSED [ 55%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles26-lengths19] PASSED [ 55%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles27-lengths0] PASSED [ 55%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles27-lengths1] PASSED [ 55%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles27-lengths2] PASSED [ 55%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles27-lengths3] PASSED [ 55%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles27-lengths4] PASSED [ 55%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles27-lengths5] PASSED [ 55%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles27-lengths6] PASSED [ 55%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles27-lengths7] PASSED [ 55%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles27-lengths8] PASSED [ 55%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles27-lengths9] PASSED [ 55%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles27-lengths10] PASSED [ 55%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles27-lengths11] PASSED [ 55%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles27-lengths12] PASSED [ 55%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles27-lengths13] PASSED [ 55%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles27-lengths14] PASSED [ 55%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles27-lengths15] PASSED [ 55%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles27-lengths16] PASSED [ 55%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles27-lengths17] PASSED [ 55%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles27-lengths18] PASSED [ 55%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles27-lengths19] PASSED [ 55%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles28-lengths0] PASSED [ 55%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles28-lengths1] PASSED [ 55%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles28-lengths2] PASSED [ 55%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles28-lengths3] PASSED [ 55%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles28-lengths4] PASSED [ 55%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles28-lengths5] PASSED [ 55%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles28-lengths6] PASSED [ 55%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles28-lengths7] PASSED [ 55%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles28-lengths8] PASSED [ 55%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles28-lengths9] PASSED [ 55%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles28-lengths10] PASSED [ 55%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles28-lengths11] PASSED [ 55%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles28-lengths12] PASSED [ 55%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles28-lengths13] PASSED [ 55%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles28-lengths14] PASSED [ 55%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles28-lengths15] PASSED [ 55%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles28-lengths16] PASSED [ 55%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles28-lengths17] PASSED [ 55%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles28-lengths18] PASSED [ 55%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles28-lengths19] PASSED [ 55%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles29-lengths0] PASSED [ 55%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles29-lengths1] PASSED [ 55%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles29-lengths2] PASSED [ 55%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles29-lengths3] PASSED [ 55%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles29-lengths4] PASSED [ 55%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles29-lengths5] PASSED [ 55%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles29-lengths6] PASSED [ 55%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles29-lengths7] PASSED [ 55%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles29-lengths8] PASSED [ 56%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles29-lengths9] PASSED [ 56%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles29-lengths10] PASSED [ 56%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles29-lengths11] PASSED [ 56%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles29-lengths12] PASSED [ 56%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles29-lengths13] PASSED [ 56%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles29-lengths14] PASSED [ 56%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles29-lengths15] PASSED [ 56%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles29-lengths16] PASSED [ 56%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles29-lengths17] PASSED [ 56%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles29-lengths18] PASSED [ 56%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles29-lengths19] PASSED [ 56%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles30-lengths0] PASSED [ 56%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles30-lengths1] PASSED [ 56%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles30-lengths2] PASSED [ 56%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles30-lengths3] PASSED [ 56%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles30-lengths4] PASSED [ 56%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles30-lengths5] PASSED [ 56%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles30-lengths6] PASSED [ 56%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles30-lengths7] PASSED [ 56%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles30-lengths8] PASSED [ 56%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles30-lengths9] PASSED [ 56%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles30-lengths10] PASSED [ 56%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles30-lengths11] PASSED [ 56%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles30-lengths12] PASSED [ 56%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles30-lengths13] PASSED [ 56%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles30-lengths14] PASSED [ 56%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles30-lengths15] PASSED [ 56%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles30-lengths16] PASSED [ 56%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles30-lengths17] PASSED [ 56%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles30-lengths18] PASSED [ 56%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles30-lengths19] PASSED [ 56%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles31-lengths0] PASSED [ 56%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles31-lengths1] PASSED [ 56%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles31-lengths2] PASSED [ 56%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles31-lengths3] PASSED [ 56%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles31-lengths4] PASSED [ 56%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles31-lengths5] PASSED [ 56%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles31-lengths6] PASSED [ 56%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles31-lengths7] PASSED [ 56%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles31-lengths8] PASSED [ 56%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles31-lengths9] PASSED [ 56%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles31-lengths10] PASSED [ 56%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles31-lengths11] PASSED [ 56%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles31-lengths12] PASSED [ 56%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles31-lengths13] PASSED [ 56%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles31-lengths14] PASSED [ 56%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles31-lengths15] PASSED [ 56%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles31-lengths16] PASSED [ 56%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles31-lengths17] PASSED [ 56%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles31-lengths18] PASSED [ 56%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles31-lengths19] PASSED [ 56%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles32-lengths0] PASSED [ 56%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles32-lengths1] PASSED [ 56%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles32-lengths2] PASSED [ 56%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles32-lengths3] PASSED [ 56%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles32-lengths4] PASSED [ 56%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles32-lengths5] PASSED [ 56%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles32-lengths6] PASSED [ 56%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles32-lengths7] PASSED [ 56%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles32-lengths8] PASSED [ 56%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles32-lengths9] PASSED [ 56%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles32-lengths10] PASSED [ 56%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles32-lengths11] PASSED [ 56%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles32-lengths12] PASSED [ 56%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles32-lengths13] PASSED [ 56%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles32-lengths14] PASSED [ 56%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles32-lengths15] PASSED [ 56%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles32-lengths16] PASSED [ 56%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles32-lengths17] PASSED [ 56%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles32-lengths18] PASSED [ 56%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles32-lengths19] PASSED [ 56%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles33-lengths0] PASSED [ 56%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles33-lengths1] PASSED [ 56%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles33-lengths2] PASSED [ 56%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles33-lengths3] PASSED [ 56%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles33-lengths4] PASSED [ 56%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles33-lengths5] PASSED [ 56%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles33-lengths6] PASSED [ 56%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles33-lengths7] PASSED [ 56%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles33-lengths8] PASSED [ 56%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles33-lengths9] PASSED [ 56%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles33-lengths10] PASSED [ 56%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles33-lengths11] PASSED [ 56%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles33-lengths12] PASSED [ 56%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles33-lengths13] PASSED [ 56%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles33-lengths14] PASSED [ 56%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles33-lengths15] PASSED [ 56%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles33-lengths16] PASSED [ 56%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles33-lengths17] PASSED [ 56%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles33-lengths18] PASSED [ 56%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles33-lengths19] PASSED [ 56%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles34-lengths0] PASSED [ 56%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles34-lengths1] PASSED [ 56%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles34-lengths2] PASSED [ 56%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles34-lengths3] PASSED [ 56%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles34-lengths4] PASSED [ 56%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles34-lengths5] PASSED [ 56%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles34-lengths6] PASSED [ 56%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles34-lengths7] PASSED [ 56%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles34-lengths8] PASSED [ 56%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles34-lengths9] PASSED [ 56%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles34-lengths10] PASSED [ 56%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles34-lengths11] PASSED [ 56%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles34-lengths12] PASSED [ 56%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles34-lengths13] PASSED [ 56%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles34-lengths14] PASSED [ 56%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles34-lengths15] PASSED [ 56%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles34-lengths16] PASSED [ 56%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles34-lengths17] PASSED [ 56%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles34-lengths18] PASSED [ 56%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles34-lengths19] PASSED [ 56%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles35-lengths0] PASSED [ 56%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles35-lengths1] PASSED [ 56%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles35-lengths2] PASSED [ 56%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles35-lengths3] PASSED [ 56%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles35-lengths4] PASSED [ 56%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles35-lengths5] PASSED [ 56%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles35-lengths6] PASSED [ 56%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles35-lengths7] PASSED [ 56%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles35-lengths8] PASSED [ 56%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles35-lengths9] PASSED [ 56%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles35-lengths10] PASSED [ 56%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles35-lengths11] PASSED [ 56%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles35-lengths12] PASSED [ 56%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles35-lengths13] PASSED [ 56%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles35-lengths14] PASSED [ 56%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles35-lengths15] PASSED [ 56%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles35-lengths16] PASSED [ 56%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles35-lengths17] PASSED [ 56%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles35-lengths18] PASSED [ 56%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles35-lengths19] PASSED [ 56%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles36-lengths0] PASSED [ 56%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles36-lengths1] PASSED [ 56%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles36-lengths2] PASSED [ 56%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles36-lengths3] PASSED [ 56%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles36-lengths4] PASSED [ 56%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles36-lengths5] PASSED [ 56%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles36-lengths6] PASSED [ 56%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles36-lengths7] PASSED [ 56%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles36-lengths8] PASSED [ 56%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles36-lengths9] PASSED [ 56%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles36-lengths10] PASSED [ 56%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles36-lengths11] PASSED [ 56%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles36-lengths12] PASSED [ 56%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles36-lengths13] PASSED [ 56%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles36-lengths14] PASSED [ 56%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles36-lengths15] PASSED [ 56%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles36-lengths16] PASSED [ 56%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles36-lengths17] PASSED [ 56%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles36-lengths18] PASSED [ 56%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles36-lengths19] PASSED [ 56%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles37-lengths0] PASSED [ 56%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles37-lengths1] PASSED [ 56%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles37-lengths2] PASSED [ 56%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles37-lengths3] PASSED [ 56%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles37-lengths4] PASSED [ 56%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles37-lengths5] PASSED [ 56%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles37-lengths6] PASSED [ 56%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles37-lengths7] PASSED [ 56%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles37-lengths8] PASSED [ 56%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles37-lengths9] PASSED [ 56%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles37-lengths10] PASSED [ 56%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles37-lengths11] PASSED [ 56%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles37-lengths12] PASSED [ 56%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles37-lengths13] PASSED [ 56%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles37-lengths14] PASSED [ 56%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles37-lengths15] PASSED [ 56%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles37-lengths16] PASSED [ 56%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles37-lengths17] PASSED [ 56%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles37-lengths18] PASSED [ 56%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles37-lengths19] PASSED [ 56%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles38-lengths0] PASSED [ 56%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles38-lengths1] PASSED [ 56%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles38-lengths2] PASSED [ 56%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles38-lengths3] PASSED [ 56%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles38-lengths4] PASSED [ 56%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles38-lengths5] PASSED [ 56%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles38-lengths6] PASSED [ 56%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles38-lengths7] PASSED [ 56%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles38-lengths8] PASSED [ 56%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles38-lengths9] PASSED [ 56%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles38-lengths10] PASSED [ 56%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles38-lengths11] PASSED [ 56%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles38-lengths12] PASSED [ 56%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles38-lengths13] PASSED [ 57%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles38-lengths14] PASSED [ 57%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles38-lengths15] PASSED [ 57%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles38-lengths16] PASSED [ 57%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles38-lengths17] PASSED [ 57%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles38-lengths18] PASSED [ 57%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles38-lengths19] PASSED [ 57%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles39-lengths0] PASSED [ 57%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles39-lengths1] PASSED [ 57%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles39-lengths2] PASSED [ 57%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles39-lengths3] PASSED [ 57%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles39-lengths4] PASSED [ 57%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles39-lengths5] PASSED [ 57%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles39-lengths6] PASSED [ 57%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles39-lengths7] PASSED [ 57%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles39-lengths8] PASSED [ 57%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles39-lengths9] PASSED [ 57%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles39-lengths10] PASSED [ 57%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles39-lengths11] PASSED [ 57%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles39-lengths12] PASSED [ 57%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles39-lengths13] PASSED [ 57%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles39-lengths14] PASSED [ 57%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles39-lengths15] PASSED [ 57%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles39-lengths16] PASSED [ 57%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles39-lengths17] PASSED [ 57%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles39-lengths18] PASSED [ 57%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles39-lengths19] PASSED [ 57%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles40-lengths0] PASSED [ 57%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles40-lengths1] PASSED [ 57%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles40-lengths2] PASSED [ 57%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles40-lengths3] PASSED [ 57%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles40-lengths4] PASSED [ 57%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles40-lengths5] PASSED [ 57%] 623s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles40-lengths6] PASSED [ 57%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles40-lengths7] PASSED [ 57%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles40-lengths8] PASSED [ 57%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles40-lengths9] PASSED [ 57%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles40-lengths10] PASSED [ 57%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles40-lengths11] PASSED [ 57%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles40-lengths12] PASSED [ 57%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles40-lengths13] PASSED [ 57%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles40-lengths14] PASSED [ 57%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles40-lengths15] PASSED [ 57%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles40-lengths16] PASSED [ 57%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles40-lengths17] PASSED [ 57%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles40-lengths18] PASSED [ 57%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles40-lengths19] PASSED [ 57%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles41-lengths0] PASSED [ 57%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles41-lengths1] PASSED [ 57%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles41-lengths2] PASSED [ 57%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles41-lengths3] PASSED [ 57%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles41-lengths4] PASSED [ 57%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles41-lengths5] PASSED [ 57%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles41-lengths6] PASSED [ 57%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles41-lengths7] PASSED [ 57%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles41-lengths8] PASSED [ 57%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles41-lengths9] PASSED [ 57%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles41-lengths10] PASSED [ 57%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles41-lengths11] PASSED [ 57%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles41-lengths12] PASSED [ 57%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles41-lengths13] PASSED [ 57%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles41-lengths14] PASSED [ 57%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles41-lengths15] PASSED [ 57%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles41-lengths16] PASSED [ 57%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles41-lengths17] PASSED [ 57%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles41-lengths18] PASSED [ 57%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles41-lengths19] PASSED [ 57%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles42-lengths0] PASSED [ 57%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles42-lengths1] PASSED [ 57%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles42-lengths2] PASSED [ 57%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles42-lengths3] PASSED [ 57%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles42-lengths4] PASSED [ 57%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles42-lengths5] PASSED [ 57%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles42-lengths6] PASSED [ 57%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles42-lengths7] PASSED [ 57%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles42-lengths8] PASSED [ 57%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles42-lengths9] PASSED [ 57%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles42-lengths10] PASSED [ 57%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles42-lengths11] PASSED [ 57%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles42-lengths12] PASSED [ 57%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles42-lengths13] PASSED [ 57%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles42-lengths14] PASSED [ 57%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles42-lengths15] PASSED [ 57%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles42-lengths16] PASSED [ 57%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles42-lengths17] PASSED [ 57%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles42-lengths18] PASSED [ 57%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles42-lengths19] PASSED [ 57%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles43-lengths0] PASSED [ 57%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles43-lengths1] PASSED [ 57%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles43-lengths2] PASSED [ 57%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles43-lengths3] PASSED [ 57%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles43-lengths4] PASSED [ 57%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles43-lengths5] PASSED [ 57%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles43-lengths6] PASSED [ 57%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles43-lengths7] PASSED [ 57%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles43-lengths8] PASSED [ 57%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles43-lengths9] PASSED [ 57%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles43-lengths10] PASSED [ 57%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles43-lengths11] PASSED [ 57%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles43-lengths12] PASSED [ 57%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles43-lengths13] PASSED [ 57%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles43-lengths14] PASSED [ 57%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles43-lengths15] PASSED [ 57%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles43-lengths16] PASSED [ 57%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles43-lengths17] PASSED [ 57%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles43-lengths18] PASSED [ 57%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles43-lengths19] PASSED [ 57%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles44-lengths0] PASSED [ 57%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles44-lengths1] PASSED [ 57%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles44-lengths2] PASSED [ 57%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles44-lengths3] PASSED [ 57%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles44-lengths4] PASSED [ 57%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles44-lengths5] PASSED [ 57%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles44-lengths6] PASSED [ 57%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles44-lengths7] PASSED [ 57%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles44-lengths8] PASSED [ 57%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles44-lengths9] PASSED [ 57%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles44-lengths10] PASSED [ 57%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles44-lengths11] PASSED [ 57%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles44-lengths12] PASSED [ 57%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles44-lengths13] PASSED [ 57%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles44-lengths14] PASSED [ 57%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles44-lengths15] PASSED [ 57%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles44-lengths16] PASSED [ 57%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles44-lengths17] PASSED [ 57%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles44-lengths18] PASSED [ 57%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles44-lengths19] PASSED [ 57%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles45-lengths0] PASSED [ 57%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles45-lengths1] PASSED [ 57%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles45-lengths2] PASSED [ 57%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles45-lengths3] PASSED [ 57%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles45-lengths4] PASSED [ 57%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles45-lengths5] PASSED [ 57%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles45-lengths6] PASSED [ 57%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles45-lengths7] PASSED [ 57%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles45-lengths8] PASSED [ 57%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles45-lengths9] PASSED [ 57%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles45-lengths10] PASSED [ 57%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles45-lengths11] PASSED [ 57%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles45-lengths12] PASSED [ 57%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles45-lengths13] PASSED [ 57%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles45-lengths14] PASSED [ 57%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles45-lengths15] PASSED [ 57%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles45-lengths16] PASSED [ 57%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles45-lengths17] PASSED [ 57%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles45-lengths18] PASSED [ 57%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles45-lengths19] PASSED [ 57%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles46-lengths0] PASSED [ 57%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles46-lengths1] PASSED [ 57%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles46-lengths2] PASSED [ 57%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles46-lengths3] PASSED [ 57%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles46-lengths4] PASSED [ 57%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles46-lengths5] PASSED [ 57%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles46-lengths6] PASSED [ 57%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles46-lengths7] PASSED [ 57%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles46-lengths8] PASSED [ 57%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles46-lengths9] PASSED [ 57%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles46-lengths10] PASSED [ 57%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles46-lengths11] PASSED [ 57%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles46-lengths12] PASSED [ 57%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles46-lengths13] PASSED [ 57%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles46-lengths14] PASSED [ 57%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles46-lengths15] PASSED [ 57%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles46-lengths16] PASSED [ 57%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles46-lengths17] PASSED [ 57%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles46-lengths18] PASSED [ 57%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles46-lengths19] PASSED [ 57%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles47-lengths0] PASSED [ 57%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles47-lengths1] PASSED [ 57%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles47-lengths2] PASSED [ 57%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles47-lengths3] PASSED [ 57%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles47-lengths4] PASSED [ 57%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles47-lengths5] PASSED [ 57%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles47-lengths6] PASSED [ 57%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles47-lengths7] PASSED [ 57%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles47-lengths8] PASSED [ 57%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles47-lengths9] PASSED [ 57%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles47-lengths10] PASSED [ 57%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles47-lengths11] PASSED [ 57%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles47-lengths12] PASSED [ 57%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles47-lengths13] PASSED [ 57%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles47-lengths14] PASSED [ 57%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles47-lengths15] PASSED [ 57%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles47-lengths16] PASSED [ 57%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles47-lengths17] PASSED [ 58%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles47-lengths18] PASSED [ 58%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles47-lengths19] PASSED [ 58%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles48-lengths0] PASSED [ 58%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles48-lengths1] PASSED [ 58%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles48-lengths2] PASSED [ 58%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles48-lengths3] PASSED [ 58%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles48-lengths4] PASSED [ 58%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles48-lengths5] PASSED [ 58%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles48-lengths6] PASSED [ 58%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles48-lengths7] PASSED [ 58%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles48-lengths8] PASSED [ 58%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles48-lengths9] PASSED [ 58%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles48-lengths10] PASSED [ 58%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles48-lengths11] PASSED [ 58%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles48-lengths12] PASSED [ 58%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles48-lengths13] PASSED [ 58%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles48-lengths14] PASSED [ 58%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles48-lengths15] PASSED [ 58%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles48-lengths16] PASSED [ 58%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles48-lengths17] PASSED [ 58%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles48-lengths18] PASSED [ 58%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles48-lengths19] PASSED [ 58%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles49-lengths0] PASSED [ 58%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles49-lengths1] PASSED [ 58%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles49-lengths2] PASSED [ 58%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles49-lengths3] PASSED [ 58%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles49-lengths4] PASSED [ 58%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles49-lengths5] PASSED [ 58%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles49-lengths6] PASSED [ 58%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles49-lengths7] PASSED [ 58%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles49-lengths8] PASSED [ 58%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles49-lengths9] PASSED [ 58%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles49-lengths10] PASSED [ 58%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles49-lengths11] PASSED [ 58%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles49-lengths12] PASSED [ 58%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles49-lengths13] PASSED [ 58%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles49-lengths14] PASSED [ 58%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles49-lengths15] PASSED [ 58%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles49-lengths16] PASSED [ 58%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles49-lengths17] PASSED [ 58%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles49-lengths18] PASSED [ 58%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles49-lengths19] PASSED [ 58%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles50-lengths0] PASSED [ 58%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles50-lengths1] PASSED [ 58%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles50-lengths2] PASSED [ 58%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles50-lengths3] PASSED [ 58%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles50-lengths4] PASSED [ 58%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles50-lengths5] PASSED [ 58%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles50-lengths6] PASSED [ 58%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles50-lengths7] PASSED [ 58%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles50-lengths8] PASSED [ 58%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles50-lengths9] PASSED [ 58%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles50-lengths10] PASSED [ 58%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles50-lengths11] PASSED [ 58%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles50-lengths12] PASSED [ 58%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles50-lengths13] PASSED [ 58%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles50-lengths14] PASSED [ 58%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles50-lengths15] PASSED [ 58%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles50-lengths16] PASSED [ 58%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles50-lengths17] PASSED [ 58%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles50-lengths18] PASSED [ 58%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles50-lengths19] PASSED [ 58%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles51-lengths0] PASSED [ 58%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles51-lengths1] PASSED [ 58%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles51-lengths2] PASSED [ 58%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles51-lengths3] PASSED [ 58%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles51-lengths4] PASSED [ 58%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles51-lengths5] PASSED [ 58%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles51-lengths6] PASSED [ 58%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles51-lengths7] PASSED [ 58%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles51-lengths8] PASSED [ 58%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles51-lengths9] PASSED [ 58%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles51-lengths10] PASSED [ 58%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles51-lengths11] PASSED [ 58%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles51-lengths12] PASSED [ 58%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles51-lengths13] PASSED [ 58%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles51-lengths14] PASSED [ 58%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles51-lengths15] PASSED [ 58%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles51-lengths16] PASSED [ 58%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles51-lengths17] PASSED [ 58%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles51-lengths18] PASSED [ 58%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles51-lengths19] PASSED [ 58%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles52-lengths0] PASSED [ 58%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles52-lengths1] PASSED [ 58%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles52-lengths2] PASSED [ 58%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles52-lengths3] PASSED [ 58%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles52-lengths4] PASSED [ 58%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles52-lengths5] PASSED [ 58%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles52-lengths6] PASSED [ 58%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles52-lengths7] PASSED [ 58%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles52-lengths8] PASSED [ 58%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles52-lengths9] PASSED [ 58%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles52-lengths10] PASSED [ 58%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles52-lengths11] PASSED [ 58%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles52-lengths12] PASSED [ 58%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles52-lengths13] PASSED [ 58%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles52-lengths14] PASSED [ 58%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles52-lengths15] PASSED [ 58%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles52-lengths16] PASSED [ 58%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles52-lengths17] PASSED [ 58%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles52-lengths18] PASSED [ 58%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles52-lengths19] PASSED [ 58%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles53-lengths0] PASSED [ 58%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles53-lengths1] PASSED [ 58%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles53-lengths2] PASSED [ 58%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles53-lengths3] PASSED [ 58%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles53-lengths4] PASSED [ 58%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles53-lengths5] PASSED [ 58%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles53-lengths6] PASSED [ 58%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles53-lengths7] PASSED [ 58%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles53-lengths8] PASSED [ 58%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles53-lengths9] PASSED [ 58%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles53-lengths10] PASSED [ 58%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles53-lengths11] PASSED [ 58%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles53-lengths12] PASSED [ 58%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles53-lengths13] PASSED [ 58%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles53-lengths14] PASSED [ 58%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles53-lengths15] PASSED [ 58%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles53-lengths16] PASSED [ 58%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles53-lengths17] PASSED [ 58%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles53-lengths18] PASSED [ 58%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles53-lengths19] PASSED [ 58%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles54-lengths0] PASSED [ 58%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles54-lengths1] PASSED [ 58%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles54-lengths2] PASSED [ 58%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles54-lengths3] PASSED [ 58%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles54-lengths4] PASSED [ 58%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles54-lengths5] PASSED [ 58%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles54-lengths6] PASSED [ 58%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles54-lengths7] PASSED [ 58%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles54-lengths8] PASSED [ 58%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles54-lengths9] PASSED [ 58%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles54-lengths10] PASSED [ 58%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles54-lengths11] PASSED [ 58%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles54-lengths12] PASSED [ 58%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles54-lengths13] PASSED [ 58%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles54-lengths14] PASSED [ 58%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles54-lengths15] PASSED [ 58%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles54-lengths16] PASSED [ 58%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles54-lengths17] PASSED [ 58%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles54-lengths18] PASSED [ 58%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles54-lengths19] PASSED [ 58%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles55-lengths0] PASSED [ 58%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles55-lengths1] PASSED [ 58%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles55-lengths2] PASSED [ 58%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles55-lengths3] PASSED [ 58%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles55-lengths4] PASSED [ 58%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles55-lengths5] PASSED [ 58%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles55-lengths6] PASSED [ 58%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles55-lengths7] PASSED [ 58%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles55-lengths8] PASSED [ 58%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles55-lengths9] PASSED [ 58%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles55-lengths10] PASSED [ 58%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles55-lengths11] PASSED [ 58%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles55-lengths12] PASSED [ 58%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles55-lengths13] PASSED [ 58%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles55-lengths14] PASSED [ 58%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles55-lengths15] PASSED [ 58%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles55-lengths16] PASSED [ 58%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles55-lengths17] PASSED [ 58%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles55-lengths18] PASSED [ 58%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles55-lengths19] PASSED [ 58%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles56-lengths0] PASSED [ 58%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles56-lengths1] PASSED [ 58%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles56-lengths2] PASSED [ 58%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles56-lengths3] PASSED [ 58%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles56-lengths4] PASSED [ 58%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles56-lengths5] PASSED [ 58%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles56-lengths6] PASSED [ 58%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles56-lengths7] PASSED [ 58%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles56-lengths8] PASSED [ 58%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles56-lengths9] PASSED [ 58%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles56-lengths10] PASSED [ 58%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles56-lengths11] PASSED [ 58%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles56-lengths12] PASSED [ 58%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles56-lengths13] PASSED [ 58%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles56-lengths14] PASSED [ 58%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles56-lengths15] PASSED [ 58%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles56-lengths16] PASSED [ 58%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles56-lengths17] PASSED [ 58%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles56-lengths18] PASSED [ 58%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles56-lengths19] PASSED [ 58%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles57-lengths0] PASSED [ 58%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles57-lengths1] PASSED [ 59%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles57-lengths2] PASSED [ 59%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles57-lengths3] PASSED [ 59%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles57-lengths4] PASSED [ 59%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles57-lengths5] PASSED [ 59%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles57-lengths6] PASSED [ 59%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles57-lengths7] PASSED [ 59%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles57-lengths8] PASSED [ 59%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles57-lengths9] PASSED [ 59%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles57-lengths10] PASSED [ 59%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles57-lengths11] PASSED [ 59%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles57-lengths12] PASSED [ 59%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles57-lengths13] PASSED [ 59%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles57-lengths14] PASSED [ 59%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles57-lengths15] PASSED [ 59%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles57-lengths16] PASSED [ 59%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles57-lengths17] PASSED [ 59%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles57-lengths18] PASSED [ 59%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles57-lengths19] PASSED [ 59%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles58-lengths0] PASSED [ 59%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles58-lengths1] PASSED [ 59%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles58-lengths2] PASSED [ 59%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles58-lengths3] PASSED [ 59%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles58-lengths4] PASSED [ 59%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles58-lengths5] PASSED [ 59%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles58-lengths6] PASSED [ 59%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles58-lengths7] PASSED [ 59%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles58-lengths8] PASSED [ 59%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles58-lengths9] PASSED [ 59%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles58-lengths10] PASSED [ 59%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles58-lengths11] PASSED [ 59%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles58-lengths12] PASSED [ 59%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles58-lengths13] PASSED [ 59%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles58-lengths14] PASSED [ 59%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles58-lengths15] PASSED [ 59%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles58-lengths16] PASSED [ 59%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles58-lengths17] PASSED [ 59%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles58-lengths18] PASSED [ 59%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles58-lengths19] PASSED [ 59%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles59-lengths0] PASSED [ 59%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles59-lengths1] PASSED [ 59%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles59-lengths2] PASSED [ 59%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles59-lengths3] PASSED [ 59%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles59-lengths4] PASSED [ 59%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles59-lengths5] PASSED [ 59%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles59-lengths6] PASSED [ 59%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles59-lengths7] PASSED [ 59%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles59-lengths8] PASSED [ 59%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles59-lengths9] PASSED [ 59%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles59-lengths10] PASSED [ 59%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles59-lengths11] PASSED [ 59%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles59-lengths12] PASSED [ 59%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles59-lengths13] PASSED [ 59%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles59-lengths14] PASSED [ 59%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles59-lengths15] PASSED [ 59%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles59-lengths16] PASSED [ 59%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles59-lengths17] PASSED [ 59%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles59-lengths18] PASSED [ 59%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles59-lengths19] PASSED [ 59%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles60-lengths0] PASSED [ 59%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles60-lengths1] PASSED [ 59%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles60-lengths2] PASSED [ 59%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles60-lengths3] PASSED [ 59%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles60-lengths4] PASSED [ 59%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles60-lengths5] PASSED [ 59%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles60-lengths6] PASSED [ 59%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles60-lengths7] PASSED [ 59%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles60-lengths8] PASSED [ 59%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles60-lengths9] PASSED [ 59%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles60-lengths10] PASSED [ 59%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles60-lengths11] PASSED [ 59%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles60-lengths12] PASSED [ 59%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles60-lengths13] PASSED [ 59%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles60-lengths14] PASSED [ 59%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles60-lengths15] PASSED [ 59%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles60-lengths16] PASSED [ 59%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles60-lengths17] PASSED [ 59%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles60-lengths18] PASSED [ 59%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles60-lengths19] PASSED [ 59%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles61-lengths0] PASSED [ 59%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles61-lengths1] PASSED [ 59%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles61-lengths2] PASSED [ 59%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles61-lengths3] PASSED [ 59%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles61-lengths4] PASSED [ 59%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles61-lengths5] PASSED [ 59%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles61-lengths6] PASSED [ 59%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles61-lengths7] PASSED [ 59%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles61-lengths8] PASSED [ 59%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles61-lengths9] PASSED [ 59%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles61-lengths10] PASSED [ 59%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles61-lengths11] PASSED [ 59%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles61-lengths12] PASSED [ 59%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles61-lengths13] PASSED [ 59%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles61-lengths14] PASSED [ 59%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles61-lengths15] PASSED [ 59%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles61-lengths16] PASSED [ 59%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles61-lengths17] PASSED [ 59%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles61-lengths18] PASSED [ 59%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles61-lengths19] PASSED [ 59%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles62-lengths0] PASSED [ 59%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles62-lengths1] PASSED [ 59%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles62-lengths2] PASSED [ 59%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles62-lengths3] PASSED [ 59%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles62-lengths4] PASSED [ 59%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles62-lengths5] PASSED [ 59%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles62-lengths6] PASSED [ 59%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles62-lengths7] PASSED [ 59%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles62-lengths8] PASSED [ 59%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles62-lengths9] PASSED [ 59%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles62-lengths10] PASSED [ 59%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles62-lengths11] PASSED [ 59%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles62-lengths12] PASSED [ 59%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles62-lengths13] PASSED [ 59%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles62-lengths14] PASSED [ 59%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles62-lengths15] PASSED [ 59%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles62-lengths16] PASSED [ 59%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles62-lengths17] PASSED [ 59%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles62-lengths18] PASSED [ 59%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles62-lengths19] PASSED [ 59%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles63-lengths0] PASSED [ 59%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles63-lengths1] PASSED [ 59%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles63-lengths2] PASSED [ 59%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles63-lengths3] PASSED [ 59%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles63-lengths4] PASSED [ 59%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles63-lengths5] PASSED [ 59%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles63-lengths6] PASSED [ 59%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles63-lengths7] PASSED [ 59%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles63-lengths8] PASSED [ 59%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles63-lengths9] PASSED [ 59%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles63-lengths10] PASSED [ 59%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles63-lengths11] PASSED [ 59%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles63-lengths12] PASSED [ 59%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles63-lengths13] PASSED [ 59%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles63-lengths14] PASSED [ 59%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles63-lengths15] PASSED [ 59%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles63-lengths16] PASSED [ 59%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles63-lengths17] PASSED [ 59%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles63-lengths18] PASSED [ 59%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles63-lengths19] PASSED [ 59%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles64-lengths0] PASSED [ 59%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles64-lengths1] PASSED [ 59%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles64-lengths2] PASSED [ 59%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles64-lengths3] PASSED [ 59%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles64-lengths4] PASSED [ 59%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles64-lengths5] PASSED [ 59%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles64-lengths6] PASSED [ 59%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles64-lengths7] PASSED [ 59%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles64-lengths8] PASSED [ 59%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles64-lengths9] PASSED [ 59%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles64-lengths10] PASSED [ 59%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles64-lengths11] PASSED [ 59%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles64-lengths12] PASSED [ 59%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles64-lengths13] PASSED [ 59%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles64-lengths14] PASSED [ 59%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles64-lengths15] PASSED [ 59%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles64-lengths16] PASSED [ 59%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles64-lengths17] PASSED [ 59%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles64-lengths18] PASSED [ 59%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles64-lengths19] PASSED [ 59%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles65-lengths0] PASSED [ 59%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles65-lengths1] PASSED [ 59%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles65-lengths2] PASSED [ 59%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles65-lengths3] PASSED [ 59%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles65-lengths4] PASSED [ 59%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles65-lengths5] PASSED [ 59%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles65-lengths6] PASSED [ 59%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles65-lengths7] PASSED [ 59%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles65-lengths8] PASSED [ 59%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles65-lengths9] PASSED [ 59%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles65-lengths10] PASSED [ 59%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles65-lengths11] PASSED [ 59%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles65-lengths12] PASSED [ 59%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles65-lengths13] PASSED [ 59%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles65-lengths14] PASSED [ 59%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles65-lengths15] PASSED [ 59%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles65-lengths16] PASSED [ 59%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles65-lengths17] PASSED [ 59%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles65-lengths18] PASSED [ 59%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles65-lengths19] PASSED [ 59%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles66-lengths0] PASSED [ 59%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles66-lengths1] PASSED [ 59%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles66-lengths2] PASSED [ 59%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles66-lengths3] PASSED [ 59%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles66-lengths4] PASSED [ 59%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles66-lengths5] PASSED [ 60%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles66-lengths6] PASSED [ 60%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles66-lengths7] PASSED [ 60%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles66-lengths8] PASSED [ 60%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles66-lengths9] PASSED [ 60%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles66-lengths10] PASSED [ 60%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles66-lengths11] PASSED [ 60%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles66-lengths12] PASSED [ 60%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles66-lengths13] PASSED [ 60%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles66-lengths14] PASSED [ 60%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles66-lengths15] PASSED [ 60%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles66-lengths16] PASSED [ 60%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles66-lengths17] PASSED [ 60%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles66-lengths18] PASSED [ 60%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles66-lengths19] PASSED [ 60%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles67-lengths0] PASSED [ 60%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles67-lengths1] PASSED [ 60%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles67-lengths2] PASSED [ 60%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles67-lengths3] PASSED [ 60%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles67-lengths4] PASSED [ 60%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles67-lengths5] PASSED [ 60%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles67-lengths6] PASSED [ 60%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles67-lengths7] PASSED [ 60%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles67-lengths8] PASSED [ 60%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles67-lengths9] PASSED [ 60%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles67-lengths10] PASSED [ 60%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles67-lengths11] PASSED [ 60%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles67-lengths12] PASSED [ 60%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles67-lengths13] PASSED [ 60%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles67-lengths14] PASSED [ 60%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles67-lengths15] PASSED [ 60%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles67-lengths16] PASSED [ 60%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles67-lengths17] PASSED [ 60%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles67-lengths18] PASSED [ 60%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles67-lengths19] PASSED [ 60%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles68-lengths0] PASSED [ 60%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles68-lengths1] PASSED [ 60%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles68-lengths2] PASSED [ 60%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles68-lengths3] PASSED [ 60%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles68-lengths4] PASSED [ 60%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles68-lengths5] PASSED [ 60%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles68-lengths6] PASSED [ 60%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles68-lengths7] PASSED [ 60%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles68-lengths8] PASSED [ 60%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles68-lengths9] PASSED [ 60%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles68-lengths10] PASSED [ 60%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles68-lengths11] PASSED [ 60%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles68-lengths12] PASSED [ 60%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles68-lengths13] PASSED [ 60%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles68-lengths14] PASSED [ 60%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles68-lengths15] PASSED [ 60%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles68-lengths16] PASSED [ 60%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles68-lengths17] PASSED [ 60%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles68-lengths18] PASSED [ 60%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles68-lengths19] PASSED [ 60%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles69-lengths0] PASSED [ 60%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles69-lengths1] PASSED [ 60%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles69-lengths2] PASSED [ 60%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles69-lengths3] PASSED [ 60%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles69-lengths4] PASSED [ 60%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles69-lengths5] PASSED [ 60%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles69-lengths6] PASSED [ 60%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles69-lengths7] PASSED [ 60%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles69-lengths8] PASSED [ 60%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles69-lengths9] PASSED [ 60%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles69-lengths10] PASSED [ 60%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles69-lengths11] PASSED [ 60%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles69-lengths12] PASSED [ 60%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles69-lengths13] PASSED [ 60%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles69-lengths14] PASSED [ 60%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles69-lengths15] PASSED [ 60%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles69-lengths16] PASSED [ 60%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles69-lengths17] PASSED [ 60%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles69-lengths18] PASSED [ 60%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles69-lengths19] PASSED [ 60%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles70-lengths0] PASSED [ 60%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles70-lengths1] PASSED [ 60%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles70-lengths2] PASSED [ 60%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles70-lengths3] PASSED [ 60%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles70-lengths4] PASSED [ 60%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles70-lengths5] PASSED [ 60%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles70-lengths6] PASSED [ 60%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles70-lengths7] PASSED [ 60%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles70-lengths8] PASSED [ 60%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles70-lengths9] PASSED [ 60%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles70-lengths10] PASSED [ 60%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles70-lengths11] PASSED [ 60%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles70-lengths12] PASSED [ 60%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles70-lengths13] PASSED [ 60%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles70-lengths14] PASSED [ 60%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles70-lengths15] PASSED [ 60%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles70-lengths16] PASSED [ 60%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles70-lengths17] PASSED [ 60%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles70-lengths18] PASSED [ 60%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles70-lengths19] PASSED [ 60%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles71-lengths0] PASSED [ 60%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles71-lengths1] PASSED [ 60%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles71-lengths2] PASSED [ 60%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles71-lengths3] PASSED [ 60%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles71-lengths4] PASSED [ 60%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles71-lengths5] PASSED [ 60%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles71-lengths6] PASSED [ 60%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles71-lengths7] PASSED [ 60%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles71-lengths8] PASSED [ 60%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles71-lengths9] PASSED [ 60%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles71-lengths10] PASSED [ 60%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles71-lengths11] PASSED [ 60%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles71-lengths12] PASSED [ 60%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles71-lengths13] PASSED [ 60%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles71-lengths14] PASSED [ 60%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles71-lengths15] PASSED [ 60%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles71-lengths16] PASSED [ 60%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles71-lengths17] PASSED [ 60%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles71-lengths18] PASSED [ 60%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles71-lengths19] PASSED [ 60%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles72-lengths0] PASSED [ 60%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles72-lengths1] PASSED [ 60%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles72-lengths2] PASSED [ 60%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles72-lengths3] PASSED [ 60%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles72-lengths4] PASSED [ 60%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles72-lengths5] PASSED [ 60%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles72-lengths6] PASSED [ 60%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles72-lengths7] PASSED [ 60%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles72-lengths8] PASSED [ 60%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles72-lengths9] PASSED [ 60%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles72-lengths10] PASSED [ 60%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles72-lengths11] PASSED [ 60%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles72-lengths12] PASSED [ 60%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles72-lengths13] PASSED [ 60%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles72-lengths14] PASSED [ 60%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles72-lengths15] PASSED [ 60%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles72-lengths16] PASSED [ 60%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles72-lengths17] PASSED [ 60%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles72-lengths18] PASSED [ 60%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles72-lengths19] PASSED [ 60%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles73-lengths0] PASSED [ 60%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles73-lengths1] PASSED [ 60%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles73-lengths2] PASSED [ 60%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles73-lengths3] PASSED [ 60%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles73-lengths4] PASSED [ 60%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles73-lengths5] PASSED [ 60%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles73-lengths6] PASSED [ 60%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles73-lengths7] PASSED [ 60%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles73-lengths8] PASSED [ 60%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles73-lengths9] PASSED [ 60%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles73-lengths10] PASSED [ 60%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles73-lengths11] PASSED [ 60%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles73-lengths12] PASSED [ 60%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles73-lengths13] PASSED [ 60%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles73-lengths14] PASSED [ 60%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles73-lengths15] PASSED [ 60%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles73-lengths16] PASSED [ 60%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles73-lengths17] PASSED [ 60%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles73-lengths18] PASSED [ 60%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles73-lengths19] PASSED [ 60%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles74-lengths0] PASSED [ 60%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles74-lengths1] PASSED [ 60%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles74-lengths2] PASSED [ 60%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles74-lengths3] PASSED [ 60%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles74-lengths4] PASSED [ 60%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles74-lengths5] PASSED [ 60%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles74-lengths6] PASSED [ 60%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles74-lengths7] PASSED [ 60%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles74-lengths8] PASSED [ 60%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles74-lengths9] PASSED [ 60%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles74-lengths10] PASSED [ 60%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles74-lengths11] PASSED [ 60%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles74-lengths12] PASSED [ 60%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles74-lengths13] PASSED [ 60%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles74-lengths14] PASSED [ 60%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles74-lengths15] PASSED [ 60%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles74-lengths16] PASSED [ 60%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles74-lengths17] PASSED [ 60%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles74-lengths18] PASSED [ 60%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles74-lengths19] PASSED [ 60%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles75-lengths0] PASSED [ 60%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles75-lengths1] PASSED [ 60%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles75-lengths2] PASSED [ 60%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles75-lengths3] PASSED [ 60%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles75-lengths4] PASSED [ 60%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles75-lengths5] PASSED [ 60%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles75-lengths6] PASSED [ 60%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles75-lengths7] PASSED [ 60%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles75-lengths8] PASSED [ 60%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles75-lengths9] PASSED [ 60%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles75-lengths10] PASSED [ 61%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles75-lengths11] PASSED [ 61%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles75-lengths12] PASSED [ 61%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles75-lengths13] PASSED [ 61%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles75-lengths14] PASSED [ 61%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles75-lengths15] PASSED [ 61%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles75-lengths16] PASSED [ 61%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles75-lengths17] PASSED [ 61%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles75-lengths18] PASSED [ 61%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles75-lengths19] PASSED [ 61%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles76-lengths0] PASSED [ 61%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles76-lengths1] PASSED [ 61%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles76-lengths2] PASSED [ 61%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles76-lengths3] PASSED [ 61%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles76-lengths4] PASSED [ 61%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles76-lengths5] PASSED [ 61%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles76-lengths6] PASSED [ 61%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles76-lengths7] PASSED [ 61%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles76-lengths8] PASSED [ 61%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles76-lengths9] PASSED [ 61%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles76-lengths10] PASSED [ 61%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles76-lengths11] PASSED [ 61%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles76-lengths12] PASSED [ 61%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles76-lengths13] PASSED [ 61%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles76-lengths14] PASSED [ 61%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles76-lengths15] PASSED [ 61%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles76-lengths16] PASSED [ 61%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles76-lengths17] PASSED [ 61%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles76-lengths18] PASSED [ 61%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles76-lengths19] PASSED [ 61%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles77-lengths0] PASSED [ 61%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles77-lengths1] PASSED [ 61%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles77-lengths2] PASSED [ 61%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles77-lengths3] PASSED [ 61%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles77-lengths4] PASSED [ 61%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles77-lengths5] PASSED [ 61%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles77-lengths6] PASSED [ 61%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles77-lengths7] PASSED [ 61%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles77-lengths8] PASSED [ 61%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles77-lengths9] PASSED [ 61%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles77-lengths10] PASSED [ 61%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles77-lengths11] PASSED [ 61%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles77-lengths12] PASSED [ 61%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles77-lengths13] PASSED [ 61%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles77-lengths14] PASSED [ 61%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles77-lengths15] PASSED [ 61%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles77-lengths16] PASSED [ 61%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles77-lengths17] PASSED [ 61%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles77-lengths18] PASSED [ 61%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles77-lengths19] PASSED [ 61%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles78-lengths0] PASSED [ 61%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles78-lengths1] PASSED [ 61%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles78-lengths2] PASSED [ 61%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles78-lengths3] PASSED [ 61%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles78-lengths4] PASSED [ 61%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles78-lengths5] PASSED [ 61%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles78-lengths6] PASSED [ 61%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles78-lengths7] PASSED [ 61%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles78-lengths8] PASSED [ 61%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles78-lengths9] PASSED [ 61%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles78-lengths10] PASSED [ 61%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles78-lengths11] PASSED [ 61%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles78-lengths12] PASSED [ 61%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles78-lengths13] PASSED [ 61%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles78-lengths14] PASSED [ 61%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles78-lengths15] PASSED [ 61%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles78-lengths16] PASSED [ 61%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles78-lengths17] PASSED [ 61%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles78-lengths18] PASSED [ 61%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles78-lengths19] PASSED [ 61%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles79-lengths0] PASSED [ 61%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles79-lengths1] PASSED [ 61%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles79-lengths2] PASSED [ 61%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles79-lengths3] PASSED [ 61%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles79-lengths4] PASSED [ 61%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles79-lengths5] PASSED [ 61%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles79-lengths6] PASSED [ 61%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles79-lengths7] PASSED [ 61%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles79-lengths8] PASSED [ 61%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles79-lengths9] PASSED [ 61%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles79-lengths10] PASSED [ 61%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles79-lengths11] PASSED [ 61%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles79-lengths12] PASSED [ 61%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles79-lengths13] PASSED [ 61%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles79-lengths14] PASSED [ 61%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles79-lengths15] PASSED [ 61%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles79-lengths16] PASSED [ 61%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles79-lengths17] PASSED [ 61%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles79-lengths18] PASSED [ 61%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles79-lengths19] PASSED [ 61%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles80-lengths0] PASSED [ 61%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles80-lengths1] PASSED [ 61%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles80-lengths2] PASSED [ 61%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles80-lengths3] PASSED [ 61%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles80-lengths4] PASSED [ 61%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles80-lengths5] PASSED [ 61%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles80-lengths6] PASSED [ 61%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles80-lengths7] PASSED [ 61%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles80-lengths8] PASSED [ 61%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles80-lengths9] PASSED [ 61%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles80-lengths10] PASSED [ 61%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles80-lengths11] PASSED [ 61%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles80-lengths12] PASSED [ 61%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles80-lengths13] PASSED [ 61%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles80-lengths14] PASSED [ 61%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles80-lengths15] PASSED [ 61%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles80-lengths16] PASSED [ 61%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles80-lengths17] PASSED [ 61%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles80-lengths18] PASSED [ 61%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles80-lengths19] PASSED [ 61%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles81-lengths0] PASSED [ 61%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles81-lengths1] PASSED [ 61%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles81-lengths2] PASSED [ 61%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles81-lengths3] PASSED [ 61%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles81-lengths4] PASSED [ 61%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles81-lengths5] PASSED [ 61%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles81-lengths6] PASSED [ 61%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles81-lengths7] PASSED [ 61%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles81-lengths8] PASSED [ 61%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles81-lengths9] PASSED [ 61%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles81-lengths10] PASSED [ 61%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles81-lengths11] PASSED [ 61%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles81-lengths12] PASSED [ 61%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles81-lengths13] PASSED [ 61%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles81-lengths14] PASSED [ 61%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles81-lengths15] PASSED [ 61%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles81-lengths16] PASSED [ 61%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles81-lengths17] PASSED [ 61%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles81-lengths18] PASSED [ 61%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles81-lengths19] PASSED [ 61%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles82-lengths0] PASSED [ 61%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles82-lengths1] PASSED [ 61%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles82-lengths2] PASSED [ 61%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles82-lengths3] PASSED [ 61%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles82-lengths4] PASSED [ 61%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles82-lengths5] PASSED [ 61%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles82-lengths6] PASSED [ 61%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles82-lengths7] PASSED [ 61%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles82-lengths8] PASSED [ 61%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles82-lengths9] PASSED [ 61%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles82-lengths10] PASSED [ 61%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles82-lengths11] PASSED [ 61%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles82-lengths12] PASSED [ 61%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles82-lengths13] PASSED [ 61%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles82-lengths14] PASSED [ 61%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles82-lengths15] PASSED [ 61%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles82-lengths16] PASSED [ 61%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles82-lengths17] PASSED [ 61%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles82-lengths18] PASSED [ 61%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles82-lengths19] PASSED [ 61%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles83-lengths0] PASSED [ 61%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles83-lengths1] PASSED [ 61%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles83-lengths2] PASSED [ 61%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles83-lengths3] PASSED [ 61%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles83-lengths4] PASSED [ 61%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles83-lengths5] PASSED [ 61%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles83-lengths6] PASSED [ 61%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles83-lengths7] PASSED [ 61%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles83-lengths8] PASSED [ 61%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles83-lengths9] PASSED [ 61%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles83-lengths10] PASSED [ 61%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles83-lengths11] PASSED [ 61%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles83-lengths12] PASSED [ 61%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles83-lengths13] PASSED [ 61%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles83-lengths14] PASSED [ 61%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles83-lengths15] PASSED [ 61%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles83-lengths16] PASSED [ 61%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles83-lengths17] PASSED [ 61%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles83-lengths18] PASSED [ 61%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles83-lengths19] PASSED [ 61%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors_right_angle_zeros[60-60-60] PASSED [ 61%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors_right_angle_zeros[60-60-90] PASSED [ 61%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors_right_angle_zeros[60-90-60] PASSED [ 61%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors_right_angle_zeros[60-90-90] PASSED [ 61%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors_right_angle_zeros[90-60-60] PASSED [ 61%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors_right_angle_zeros[90-60-90] PASSED [ 61%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors_right_angle_zeros[90-90-60] PASSED [ 61%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors_right_angle_zeros[90-90-90] PASSED [ 61%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors_retval[int] PASSED [ 61%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors_retval[float] PASSED [ 61%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors_retval[float32] PASSED [ 61%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors_retval[float64] PASSED [ 61%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors_box_cycle PASSED [ 61%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors_box_cycle_exact[angles0] PASSED [ 61%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors_box_cycle_exact[angles1] PASSED [ 62%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors_box_cycle_exact[angles2] PASSED [ 62%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors_box_cycle_exact[angles3] PASSED [ 62%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors_box_cycle_exact[angles4] PASSED [ 62%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors_box_cycle_exact[angles5] PASSED [ 62%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors_box_cycle_exact[angles6] PASSED [ 62%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles0-lengths0] PASSED [ 62%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles0-lengths1] PASSED [ 62%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles0-lengths2] PASSED [ 62%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles0-lengths3] PASSED [ 62%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles0-lengths4] PASSED [ 62%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles0-lengths5] PASSED [ 62%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles0-lengths6] PASSED [ 62%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles0-lengths7] PASSED [ 62%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles0-lengths8] PASSED [ 62%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles0-lengths9] PASSED [ 62%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles0-lengths10] PASSED [ 62%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles0-lengths11] PASSED [ 62%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles0-lengths12] PASSED [ 62%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles0-lengths13] PASSED [ 62%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles0-lengths14] PASSED [ 62%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles0-lengths15] PASSED [ 62%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles0-lengths16] PASSED [ 62%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles0-lengths17] PASSED [ 62%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles0-lengths18] PASSED [ 62%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles0-lengths19] PASSED [ 62%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles1-lengths0] PASSED [ 62%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles1-lengths1] PASSED [ 62%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles1-lengths2] PASSED [ 62%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles1-lengths3] PASSED [ 62%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles1-lengths4] PASSED [ 62%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles1-lengths5] PASSED [ 62%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles1-lengths6] PASSED [ 62%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles1-lengths7] PASSED [ 62%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles1-lengths8] PASSED [ 62%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles1-lengths9] PASSED [ 62%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles1-lengths10] PASSED [ 62%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles1-lengths11] PASSED [ 62%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles1-lengths12] PASSED [ 62%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles1-lengths13] PASSED [ 62%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles1-lengths14] PASSED [ 62%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles1-lengths15] PASSED [ 62%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles1-lengths16] PASSED [ 62%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles1-lengths17] PASSED [ 62%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles1-lengths18] PASSED [ 62%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles1-lengths19] PASSED [ 62%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles2-lengths0] PASSED [ 62%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles2-lengths1] PASSED [ 62%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles2-lengths2] PASSED [ 62%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles2-lengths3] PASSED [ 62%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles2-lengths4] PASSED [ 62%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles2-lengths5] PASSED [ 62%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles2-lengths6] PASSED [ 62%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles2-lengths7] PASSED [ 62%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles2-lengths8] PASSED [ 62%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles2-lengths9] PASSED [ 62%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles2-lengths10] PASSED [ 62%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles2-lengths11] PASSED [ 62%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles2-lengths12] PASSED [ 62%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles2-lengths13] PASSED [ 62%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles2-lengths14] PASSED [ 62%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles2-lengths15] PASSED [ 62%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles2-lengths16] PASSED [ 62%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles2-lengths17] PASSED [ 62%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles2-lengths18] PASSED [ 62%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles2-lengths19] PASSED [ 62%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles3-lengths0] PASSED [ 62%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles3-lengths1] PASSED [ 62%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles3-lengths2] PASSED [ 62%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles3-lengths3] PASSED [ 62%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles3-lengths4] PASSED [ 62%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles3-lengths5] PASSED [ 62%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles3-lengths6] PASSED [ 62%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles3-lengths7] PASSED [ 62%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles3-lengths8] PASSED [ 62%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles3-lengths9] PASSED [ 62%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles3-lengths10] PASSED [ 62%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles3-lengths11] PASSED [ 62%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles3-lengths12] PASSED [ 62%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles3-lengths13] PASSED [ 62%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles3-lengths14] PASSED [ 62%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles3-lengths15] PASSED [ 62%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles3-lengths16] PASSED [ 62%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles3-lengths17] PASSED [ 62%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles3-lengths18] PASSED [ 62%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles3-lengths19] PASSED [ 62%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles4-lengths0] PASSED [ 62%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles4-lengths1] PASSED [ 62%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles4-lengths2] PASSED [ 62%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles4-lengths3] PASSED [ 62%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles4-lengths4] PASSED [ 62%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles4-lengths5] PASSED [ 62%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles4-lengths6] PASSED [ 62%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles4-lengths7] PASSED [ 62%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles4-lengths8] PASSED [ 62%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles4-lengths9] PASSED [ 62%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles4-lengths10] PASSED [ 62%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles4-lengths11] PASSED [ 62%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles4-lengths12] PASSED [ 62%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles4-lengths13] PASSED [ 62%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles4-lengths14] PASSED [ 62%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles4-lengths15] PASSED [ 62%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles4-lengths16] PASSED [ 62%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles4-lengths17] PASSED [ 62%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles4-lengths18] PASSED [ 62%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles4-lengths19] PASSED [ 62%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles5-lengths0] PASSED [ 62%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles5-lengths1] PASSED [ 62%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles5-lengths2] PASSED [ 62%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles5-lengths3] PASSED [ 62%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles5-lengths4] PASSED [ 62%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles5-lengths5] PASSED [ 62%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles5-lengths6] PASSED [ 62%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles5-lengths7] PASSED [ 62%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles5-lengths8] PASSED [ 62%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles5-lengths9] PASSED [ 62%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles5-lengths10] PASSED [ 62%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles5-lengths11] PASSED [ 62%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles5-lengths12] PASSED [ 62%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles5-lengths13] PASSED [ 62%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles5-lengths14] PASSED [ 62%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles5-lengths15] PASSED [ 62%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles5-lengths16] PASSED [ 62%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles5-lengths17] PASSED [ 62%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles5-lengths18] PASSED [ 62%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles5-lengths19] PASSED [ 62%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles6-lengths0] PASSED [ 62%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles6-lengths1] PASSED [ 62%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles6-lengths2] PASSED [ 62%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles6-lengths3] PASSED [ 62%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles6-lengths4] PASSED [ 62%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles6-lengths5] PASSED [ 62%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles6-lengths6] PASSED [ 62%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles6-lengths7] PASSED [ 62%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles6-lengths8] PASSED [ 62%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles6-lengths9] PASSED [ 62%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles6-lengths10] PASSED [ 62%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles6-lengths11] PASSED [ 62%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles6-lengths12] PASSED [ 62%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles6-lengths13] PASSED [ 62%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles6-lengths14] PASSED [ 62%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles6-lengths15] PASSED [ 62%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles6-lengths16] PASSED [ 62%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles6-lengths17] PASSED [ 62%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles6-lengths18] PASSED [ 62%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles6-lengths19] PASSED [ 62%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles7-lengths0] PASSED [ 62%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles7-lengths1] PASSED [ 62%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles7-lengths2] PASSED [ 62%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles7-lengths3] PASSED [ 62%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles7-lengths4] PASSED [ 62%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles7-lengths5] PASSED [ 62%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles7-lengths6] PASSED [ 62%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles7-lengths7] PASSED [ 62%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles7-lengths8] PASSED [ 62%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles7-lengths9] PASSED [ 62%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles7-lengths10] PASSED [ 62%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles7-lengths11] PASSED [ 62%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles7-lengths12] PASSED [ 62%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles7-lengths13] PASSED [ 62%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles7-lengths14] PASSED [ 62%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles7-lengths15] PASSED [ 62%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles7-lengths16] PASSED [ 62%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles7-lengths17] PASSED [ 62%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles7-lengths18] PASSED [ 62%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles7-lengths19] PASSED [ 62%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles8-lengths0] PASSED [ 62%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles8-lengths1] PASSED [ 62%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles8-lengths2] PASSED [ 62%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles8-lengths3] PASSED [ 62%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles8-lengths4] PASSED [ 62%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles8-lengths5] PASSED [ 62%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles8-lengths6] PASSED [ 62%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles8-lengths7] PASSED [ 62%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles8-lengths8] PASSED [ 62%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles8-lengths9] PASSED [ 62%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles8-lengths10] PASSED [ 62%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles8-lengths11] PASSED [ 62%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles8-lengths12] PASSED [ 62%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles8-lengths13] PASSED [ 62%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles8-lengths14] PASSED [ 62%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles8-lengths15] PASSED [ 62%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles8-lengths16] PASSED [ 62%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles8-lengths17] PASSED [ 62%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles8-lengths18] PASSED [ 63%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles8-lengths19] PASSED [ 63%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles9-lengths0] PASSED [ 63%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles9-lengths1] PASSED [ 63%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles9-lengths2] PASSED [ 63%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles9-lengths3] PASSED [ 63%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles9-lengths4] PASSED [ 63%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles9-lengths5] PASSED [ 63%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles9-lengths6] PASSED [ 63%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles9-lengths7] PASSED [ 63%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles9-lengths8] PASSED [ 63%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles9-lengths9] PASSED [ 63%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles9-lengths10] PASSED [ 63%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles9-lengths11] PASSED [ 63%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles9-lengths12] PASSED [ 63%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles9-lengths13] PASSED [ 63%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles9-lengths14] PASSED [ 63%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles9-lengths15] PASSED [ 63%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles9-lengths16] PASSED [ 63%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles9-lengths17] PASSED [ 63%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles9-lengths18] PASSED [ 63%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles9-lengths19] PASSED [ 63%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles10-lengths0] PASSED [ 63%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles10-lengths1] PASSED [ 63%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles10-lengths2] PASSED [ 63%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles10-lengths3] PASSED [ 63%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles10-lengths4] PASSED [ 63%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles10-lengths5] PASSED [ 63%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles10-lengths6] PASSED [ 63%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles10-lengths7] PASSED [ 63%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles10-lengths8] PASSED [ 63%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles10-lengths9] PASSED [ 63%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles10-lengths10] PASSED [ 63%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles10-lengths11] PASSED [ 63%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles10-lengths12] PASSED [ 63%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles10-lengths13] PASSED [ 63%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles10-lengths14] PASSED [ 63%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles10-lengths15] PASSED [ 63%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles10-lengths16] PASSED [ 63%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles10-lengths17] PASSED [ 63%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles10-lengths18] PASSED [ 63%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles10-lengths19] PASSED [ 63%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles11-lengths0] PASSED [ 63%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles11-lengths1] PASSED [ 63%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles11-lengths2] PASSED [ 63%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles11-lengths3] PASSED [ 63%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles11-lengths4] PASSED [ 63%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles11-lengths5] PASSED [ 63%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles11-lengths6] PASSED [ 63%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles11-lengths7] PASSED [ 63%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles11-lengths8] PASSED [ 63%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles11-lengths9] PASSED [ 63%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles11-lengths10] PASSED [ 63%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles11-lengths11] PASSED [ 63%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles11-lengths12] PASSED [ 63%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles11-lengths13] PASSED [ 63%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles11-lengths14] PASSED [ 63%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles11-lengths15] PASSED [ 63%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles11-lengths16] PASSED [ 63%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles11-lengths17] PASSED [ 63%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles11-lengths18] PASSED [ 63%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles11-lengths19] PASSED [ 63%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles12-lengths0] PASSED [ 63%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles12-lengths1] PASSED [ 63%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles12-lengths2] PASSED [ 63%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles12-lengths3] PASSED [ 63%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles12-lengths4] PASSED [ 63%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles12-lengths5] PASSED [ 63%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles12-lengths6] PASSED [ 63%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles12-lengths7] PASSED [ 63%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles12-lengths8] PASSED [ 63%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles12-lengths9] PASSED [ 63%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles12-lengths10] PASSED [ 63%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles12-lengths11] PASSED [ 63%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles12-lengths12] PASSED [ 63%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles12-lengths13] PASSED [ 63%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles12-lengths14] PASSED [ 63%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles12-lengths15] PASSED [ 63%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles12-lengths16] PASSED [ 63%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles12-lengths17] PASSED [ 63%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles12-lengths18] PASSED [ 63%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles12-lengths19] PASSED [ 63%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles13-lengths0] PASSED [ 63%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles13-lengths1] PASSED [ 63%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles13-lengths2] PASSED [ 63%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles13-lengths3] PASSED [ 63%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles13-lengths4] PASSED [ 63%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles13-lengths5] PASSED [ 63%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles13-lengths6] PASSED [ 63%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles13-lengths7] PASSED [ 63%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles13-lengths8] PASSED [ 63%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles13-lengths9] PASSED [ 63%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles13-lengths10] PASSED [ 63%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles13-lengths11] PASSED [ 63%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles13-lengths12] PASSED [ 63%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles13-lengths13] PASSED [ 63%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles13-lengths14] PASSED [ 63%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles13-lengths15] PASSED [ 63%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles13-lengths16] PASSED [ 63%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles13-lengths17] PASSED [ 63%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles13-lengths18] PASSED [ 63%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles13-lengths19] PASSED [ 63%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles14-lengths0] PASSED [ 63%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles14-lengths1] PASSED [ 63%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles14-lengths2] PASSED [ 63%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles14-lengths3] PASSED [ 63%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles14-lengths4] PASSED [ 63%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles14-lengths5] PASSED [ 63%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles14-lengths6] PASSED [ 63%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles14-lengths7] PASSED [ 63%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles14-lengths8] PASSED [ 63%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles14-lengths9] PASSED [ 63%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles14-lengths10] PASSED [ 63%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles14-lengths11] PASSED [ 63%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles14-lengths12] PASSED [ 63%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles14-lengths13] PASSED [ 63%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles14-lengths14] PASSED [ 63%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles14-lengths15] PASSED [ 63%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles14-lengths16] PASSED [ 63%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles14-lengths17] PASSED [ 63%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles14-lengths18] PASSED [ 63%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles14-lengths19] PASSED [ 63%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles15-lengths0] PASSED [ 63%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles15-lengths1] PASSED [ 63%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles15-lengths2] PASSED [ 63%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles15-lengths3] PASSED [ 63%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles15-lengths4] PASSED [ 63%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles15-lengths5] PASSED [ 63%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles15-lengths6] PASSED [ 63%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles15-lengths7] PASSED [ 63%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles15-lengths8] PASSED [ 63%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles15-lengths9] PASSED [ 63%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles15-lengths10] PASSED [ 63%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles15-lengths11] PASSED [ 63%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles15-lengths12] PASSED [ 63%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles15-lengths13] PASSED [ 63%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles15-lengths14] PASSED [ 63%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles15-lengths15] PASSED [ 63%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles15-lengths16] PASSED [ 63%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles15-lengths17] PASSED [ 63%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles15-lengths18] PASSED [ 63%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles15-lengths19] PASSED [ 63%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles16-lengths0] PASSED [ 63%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles16-lengths1] PASSED [ 63%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles16-lengths2] PASSED [ 63%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles16-lengths3] PASSED [ 63%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles16-lengths4] PASSED [ 63%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles16-lengths5] PASSED [ 63%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles16-lengths6] PASSED [ 63%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles16-lengths7] PASSED [ 63%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles16-lengths8] PASSED [ 63%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles16-lengths9] PASSED [ 63%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles16-lengths10] PASSED [ 63%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles16-lengths11] PASSED [ 63%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles16-lengths12] PASSED [ 63%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles16-lengths13] PASSED [ 63%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles16-lengths14] PASSED [ 63%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles16-lengths15] PASSED [ 63%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles16-lengths16] PASSED [ 63%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles16-lengths17] PASSED [ 63%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles16-lengths18] PASSED [ 63%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles16-lengths19] PASSED [ 63%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles17-lengths0] PASSED [ 63%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles17-lengths1] PASSED [ 63%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles17-lengths2] PASSED [ 63%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles17-lengths3] PASSED [ 63%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles17-lengths4] PASSED [ 63%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles17-lengths5] PASSED [ 63%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles17-lengths6] PASSED [ 63%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles17-lengths7] PASSED [ 63%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles17-lengths8] PASSED [ 63%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles17-lengths9] PASSED [ 63%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles17-lengths10] PASSED [ 63%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles17-lengths11] PASSED [ 63%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles17-lengths12] PASSED [ 63%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles17-lengths13] PASSED [ 63%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles17-lengths14] PASSED [ 63%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles17-lengths15] PASSED [ 63%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles17-lengths16] PASSED [ 63%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles17-lengths17] PASSED [ 63%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles17-lengths18] PASSED [ 63%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles17-lengths19] PASSED [ 63%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles18-lengths0] PASSED [ 63%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles18-lengths1] PASSED [ 63%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles18-lengths2] PASSED [ 64%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles18-lengths3] PASSED [ 64%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles18-lengths4] PASSED [ 64%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles18-lengths5] PASSED [ 64%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles18-lengths6] PASSED [ 64%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles18-lengths7] PASSED [ 64%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles18-lengths8] PASSED [ 64%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles18-lengths9] PASSED [ 64%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles18-lengths10] PASSED [ 64%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles18-lengths11] PASSED [ 64%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles18-lengths12] PASSED [ 64%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles18-lengths13] PASSED [ 64%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles18-lengths14] PASSED [ 64%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles18-lengths15] PASSED [ 64%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles18-lengths16] PASSED [ 64%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles18-lengths17] PASSED [ 64%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles18-lengths18] PASSED [ 64%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles18-lengths19] PASSED [ 64%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles19-lengths0] PASSED [ 64%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles19-lengths1] PASSED [ 64%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles19-lengths2] PASSED [ 64%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles19-lengths3] PASSED [ 64%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles19-lengths4] PASSED [ 64%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles19-lengths5] PASSED [ 64%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles19-lengths6] PASSED [ 64%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles19-lengths7] PASSED [ 64%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles19-lengths8] PASSED [ 64%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles19-lengths9] PASSED [ 64%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles19-lengths10] PASSED [ 64%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles19-lengths11] PASSED [ 64%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles19-lengths12] PASSED [ 64%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles19-lengths13] PASSED [ 64%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles19-lengths14] PASSED [ 64%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles19-lengths15] PASSED [ 64%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles19-lengths16] PASSED [ 64%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles19-lengths17] PASSED [ 64%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles19-lengths18] PASSED [ 64%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles19-lengths19] PASSED [ 64%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles20-lengths0] PASSED [ 64%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles20-lengths1] PASSED [ 64%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles20-lengths2] PASSED [ 64%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles20-lengths3] PASSED [ 64%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles20-lengths4] PASSED [ 64%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles20-lengths5] PASSED [ 64%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles20-lengths6] PASSED [ 64%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles20-lengths7] PASSED [ 64%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles20-lengths8] PASSED [ 64%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles20-lengths9] PASSED [ 64%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles20-lengths10] PASSED [ 64%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles20-lengths11] PASSED [ 64%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles20-lengths12] PASSED [ 64%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles20-lengths13] PASSED [ 64%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles20-lengths14] PASSED [ 64%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles20-lengths15] PASSED [ 64%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles20-lengths16] PASSED [ 64%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles20-lengths17] PASSED [ 64%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles20-lengths18] PASSED [ 64%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles20-lengths19] PASSED [ 64%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles21-lengths0] PASSED [ 64%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles21-lengths1] PASSED [ 64%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles21-lengths2] PASSED [ 64%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles21-lengths3] PASSED [ 64%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles21-lengths4] PASSED [ 64%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles21-lengths5] PASSED [ 64%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles21-lengths6] PASSED [ 64%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles21-lengths7] PASSED [ 64%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles21-lengths8] PASSED [ 64%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles21-lengths9] PASSED [ 64%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles21-lengths10] PASSED [ 64%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles21-lengths11] PASSED [ 64%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles21-lengths12] PASSED [ 64%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles21-lengths13] PASSED [ 64%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles21-lengths14] PASSED [ 64%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles21-lengths15] PASSED [ 64%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles21-lengths16] PASSED [ 64%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles21-lengths17] PASSED [ 64%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles21-lengths18] PASSED [ 64%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles21-lengths19] PASSED [ 64%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles22-lengths0] PASSED [ 64%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles22-lengths1] PASSED [ 64%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles22-lengths2] PASSED [ 64%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles22-lengths3] PASSED [ 64%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles22-lengths4] PASSED [ 64%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles22-lengths5] PASSED [ 64%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles22-lengths6] PASSED [ 64%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles22-lengths7] PASSED [ 64%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles22-lengths8] PASSED [ 64%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles22-lengths9] PASSED [ 64%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles22-lengths10] PASSED [ 64%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles22-lengths11] PASSED [ 64%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles22-lengths12] PASSED [ 64%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles22-lengths13] PASSED [ 64%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles22-lengths14] PASSED [ 64%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles22-lengths15] PASSED [ 64%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles22-lengths16] PASSED [ 64%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles22-lengths17] PASSED [ 64%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles22-lengths18] PASSED [ 64%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles22-lengths19] PASSED [ 64%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles23-lengths0] PASSED [ 64%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles23-lengths1] PASSED [ 64%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles23-lengths2] PASSED [ 64%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles23-lengths3] PASSED [ 64%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles23-lengths4] PASSED [ 64%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles23-lengths5] PASSED [ 64%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles23-lengths6] PASSED [ 64%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles23-lengths7] PASSED [ 64%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles23-lengths8] PASSED [ 64%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles23-lengths9] PASSED [ 64%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles23-lengths10] PASSED [ 64%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles23-lengths11] PASSED [ 64%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles23-lengths12] PASSED [ 64%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles23-lengths13] PASSED [ 64%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles23-lengths14] PASSED [ 64%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles23-lengths15] PASSED [ 64%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles23-lengths16] PASSED [ 64%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles23-lengths17] PASSED [ 64%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles23-lengths18] PASSED [ 64%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles23-lengths19] PASSED [ 64%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles24-lengths0] PASSED [ 64%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles24-lengths1] PASSED [ 64%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles24-lengths2] PASSED [ 64%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles24-lengths3] PASSED [ 64%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles24-lengths4] PASSED [ 64%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles24-lengths5] PASSED [ 64%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles24-lengths6] PASSED [ 64%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles24-lengths7] PASSED [ 64%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles24-lengths8] PASSED [ 64%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles24-lengths9] PASSED [ 64%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles24-lengths10] PASSED [ 64%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles24-lengths11] PASSED [ 64%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles24-lengths12] PASSED [ 64%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles24-lengths13] PASSED [ 64%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles24-lengths14] PASSED [ 64%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles24-lengths15] PASSED [ 64%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles24-lengths16] PASSED [ 64%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles24-lengths17] PASSED [ 64%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles24-lengths18] PASSED [ 64%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles24-lengths19] PASSED [ 64%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles25-lengths0] PASSED [ 64%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles25-lengths1] PASSED [ 64%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles25-lengths2] PASSED [ 64%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles25-lengths3] PASSED [ 64%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles25-lengths4] PASSED [ 64%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles25-lengths5] PASSED [ 64%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles25-lengths6] PASSED [ 64%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles25-lengths7] PASSED [ 64%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles25-lengths8] PASSED [ 64%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles25-lengths9] PASSED [ 64%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles25-lengths10] PASSED [ 64%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles25-lengths11] PASSED [ 64%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles25-lengths12] PASSED [ 64%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles25-lengths13] PASSED [ 64%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles25-lengths14] PASSED [ 64%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles25-lengths15] PASSED [ 64%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles25-lengths16] PASSED [ 64%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles25-lengths17] PASSED [ 64%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles25-lengths18] PASSED [ 64%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles25-lengths19] PASSED [ 64%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles26-lengths0] PASSED [ 64%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles26-lengths1] PASSED [ 64%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles26-lengths2] PASSED [ 64%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles26-lengths3] PASSED [ 64%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles26-lengths4] PASSED [ 64%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles26-lengths5] PASSED [ 64%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles26-lengths6] PASSED [ 64%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles26-lengths7] PASSED [ 64%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles26-lengths8] PASSED [ 64%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles26-lengths9] PASSED [ 64%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles26-lengths10] PASSED [ 64%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles26-lengths11] PASSED [ 64%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles26-lengths12] PASSED [ 64%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles26-lengths13] PASSED [ 64%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles26-lengths14] PASSED [ 64%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles26-lengths15] PASSED [ 64%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles26-lengths16] PASSED [ 64%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles26-lengths17] PASSED [ 64%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles26-lengths18] PASSED [ 64%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles26-lengths19] PASSED [ 64%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles27-lengths0] PASSED [ 64%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles27-lengths1] PASSED [ 64%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles27-lengths2] PASSED [ 64%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles27-lengths3] PASSED [ 64%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles27-lengths4] PASSED [ 64%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles27-lengths5] PASSED [ 64%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles27-lengths6] PASSED [ 64%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles27-lengths7] PASSED [ 65%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles27-lengths8] PASSED [ 65%] 624s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles27-lengths9] PASSED [ 65%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles27-lengths10] PASSED [ 65%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles27-lengths11] PASSED [ 65%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles27-lengths12] PASSED [ 65%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles27-lengths13] PASSED [ 65%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles27-lengths14] PASSED [ 65%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles27-lengths15] PASSED [ 65%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles27-lengths16] PASSED [ 65%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles27-lengths17] PASSED [ 65%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles27-lengths18] PASSED [ 65%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles27-lengths19] PASSED [ 65%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles28-lengths0] PASSED [ 65%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles28-lengths1] PASSED [ 65%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles28-lengths2] PASSED [ 65%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles28-lengths3] PASSED [ 65%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles28-lengths4] PASSED [ 65%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles28-lengths5] PASSED [ 65%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles28-lengths6] PASSED [ 65%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles28-lengths7] PASSED [ 65%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles28-lengths8] PASSED [ 65%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles28-lengths9] PASSED [ 65%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles28-lengths10] PASSED [ 65%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles28-lengths11] PASSED [ 65%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles28-lengths12] PASSED [ 65%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles28-lengths13] PASSED [ 65%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles28-lengths14] PASSED [ 65%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles28-lengths15] PASSED [ 65%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles28-lengths16] PASSED [ 65%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles28-lengths17] PASSED [ 65%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles28-lengths18] PASSED [ 65%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles28-lengths19] PASSED [ 65%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles29-lengths0] PASSED [ 65%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles29-lengths1] PASSED [ 65%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles29-lengths2] PASSED [ 65%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles29-lengths3] PASSED [ 65%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles29-lengths4] PASSED [ 65%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles29-lengths5] PASSED [ 65%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles29-lengths6] PASSED [ 65%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles29-lengths7] PASSED [ 65%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles29-lengths8] PASSED [ 65%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles29-lengths9] PASSED [ 65%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles29-lengths10] PASSED [ 65%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles29-lengths11] PASSED [ 65%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles29-lengths12] PASSED [ 65%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles29-lengths13] PASSED [ 65%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles29-lengths14] PASSED [ 65%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles29-lengths15] PASSED [ 65%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles29-lengths16] PASSED [ 65%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles29-lengths17] PASSED [ 65%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles29-lengths18] PASSED [ 65%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles29-lengths19] PASSED [ 65%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles30-lengths0] PASSED [ 65%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles30-lengths1] PASSED [ 65%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles30-lengths2] PASSED [ 65%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles30-lengths3] PASSED [ 65%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles30-lengths4] PASSED [ 65%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles30-lengths5] PASSED [ 65%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles30-lengths6] PASSED [ 65%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles30-lengths7] PASSED [ 65%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles30-lengths8] PASSED [ 65%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles30-lengths9] PASSED [ 65%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles30-lengths10] PASSED [ 65%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles30-lengths11] PASSED [ 65%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles30-lengths12] PASSED [ 65%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles30-lengths13] PASSED [ 65%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles30-lengths14] PASSED [ 65%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles30-lengths15] PASSED [ 65%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles30-lengths16] PASSED [ 65%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles30-lengths17] PASSED [ 65%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles30-lengths18] PASSED [ 65%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles30-lengths19] PASSED [ 65%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles31-lengths0] PASSED [ 65%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles31-lengths1] PASSED [ 65%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles31-lengths2] PASSED [ 65%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles31-lengths3] PASSED [ 65%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles31-lengths4] PASSED [ 65%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles31-lengths5] PASSED [ 65%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles31-lengths6] PASSED [ 65%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles31-lengths7] PASSED [ 65%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles31-lengths8] PASSED [ 65%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles31-lengths9] PASSED [ 65%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles31-lengths10] PASSED [ 65%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles31-lengths11] PASSED [ 65%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles31-lengths12] PASSED [ 65%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles31-lengths13] PASSED [ 65%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles31-lengths14] PASSED [ 65%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles31-lengths15] PASSED [ 65%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles31-lengths16] PASSED [ 65%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles31-lengths17] PASSED [ 65%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles31-lengths18] PASSED [ 65%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles31-lengths19] PASSED [ 65%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles32-lengths0] PASSED [ 65%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles32-lengths1] PASSED [ 65%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles32-lengths2] PASSED [ 65%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles32-lengths3] PASSED [ 65%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles32-lengths4] PASSED [ 65%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles32-lengths5] PASSED [ 65%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles32-lengths6] PASSED [ 65%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles32-lengths7] PASSED [ 65%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles32-lengths8] PASSED [ 65%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles32-lengths9] PASSED [ 65%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles32-lengths10] PASSED [ 65%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles32-lengths11] PASSED [ 65%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles32-lengths12] PASSED [ 65%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles32-lengths13] PASSED [ 65%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles32-lengths14] PASSED [ 65%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles32-lengths15] PASSED [ 65%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles32-lengths16] PASSED [ 65%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles32-lengths17] PASSED [ 65%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles32-lengths18] PASSED [ 65%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles32-lengths19] PASSED [ 65%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles33-lengths0] PASSED [ 65%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles33-lengths1] PASSED [ 65%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles33-lengths2] PASSED [ 65%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles33-lengths3] PASSED [ 65%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles33-lengths4] PASSED [ 65%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles33-lengths5] PASSED [ 65%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles33-lengths6] PASSED [ 65%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles33-lengths7] PASSED [ 65%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles33-lengths8] PASSED [ 65%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles33-lengths9] PASSED [ 65%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles33-lengths10] PASSED [ 65%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles33-lengths11] PASSED [ 65%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles33-lengths12] PASSED [ 65%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles33-lengths13] PASSED [ 65%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles33-lengths14] PASSED [ 65%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles33-lengths15] PASSED [ 65%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles33-lengths16] PASSED [ 65%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles33-lengths17] PASSED [ 65%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles33-lengths18] PASSED [ 65%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles33-lengths19] PASSED [ 65%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles34-lengths0] PASSED [ 65%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles34-lengths1] PASSED [ 65%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles34-lengths2] PASSED [ 65%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles34-lengths3] PASSED [ 65%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles34-lengths4] PASSED [ 65%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles34-lengths5] PASSED [ 65%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles34-lengths6] PASSED [ 65%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles34-lengths7] PASSED [ 65%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles34-lengths8] PASSED [ 65%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles34-lengths9] PASSED [ 65%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles34-lengths10] PASSED [ 65%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles34-lengths11] PASSED [ 65%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles34-lengths12] PASSED [ 65%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles34-lengths13] PASSED [ 65%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles34-lengths14] PASSED [ 65%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles34-lengths15] PASSED [ 65%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles34-lengths16] PASSED [ 65%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles34-lengths17] PASSED [ 65%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles34-lengths18] PASSED [ 65%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles34-lengths19] PASSED [ 65%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles35-lengths0] PASSED [ 65%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles35-lengths1] PASSED [ 65%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles35-lengths2] PASSED [ 65%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles35-lengths3] PASSED [ 65%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles35-lengths4] PASSED [ 65%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles35-lengths5] PASSED [ 65%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles35-lengths6] PASSED [ 65%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles35-lengths7] PASSED [ 65%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles35-lengths8] PASSED [ 65%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles35-lengths9] PASSED [ 65%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles35-lengths10] PASSED [ 65%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles35-lengths11] PASSED [ 65%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles35-lengths12] PASSED [ 65%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles35-lengths13] PASSED [ 65%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles35-lengths14] PASSED [ 65%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles35-lengths15] PASSED [ 65%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles35-lengths16] PASSED [ 65%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles35-lengths17] PASSED [ 65%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles35-lengths18] PASSED [ 65%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles35-lengths19] PASSED [ 65%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles36-lengths0] PASSED [ 65%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles36-lengths1] PASSED [ 65%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles36-lengths2] PASSED [ 65%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles36-lengths3] PASSED [ 65%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles36-lengths4] PASSED [ 65%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles36-lengths5] PASSED [ 65%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles36-lengths6] PASSED [ 65%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles36-lengths7] PASSED [ 65%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles36-lengths8] PASSED [ 65%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles36-lengths9] PASSED [ 65%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles36-lengths10] PASSED [ 65%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles36-lengths11] PASSED [ 66%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles36-lengths12] PASSED [ 66%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles36-lengths13] PASSED [ 66%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles36-lengths14] PASSED [ 66%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles36-lengths15] PASSED [ 66%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles36-lengths16] PASSED [ 66%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles36-lengths17] PASSED [ 66%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles36-lengths18] PASSED [ 66%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles36-lengths19] PASSED [ 66%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles37-lengths0] PASSED [ 66%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles37-lengths1] PASSED [ 66%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles37-lengths2] PASSED [ 66%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles37-lengths3] PASSED [ 66%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles37-lengths4] PASSED [ 66%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles37-lengths5] PASSED [ 66%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles37-lengths6] PASSED [ 66%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles37-lengths7] PASSED [ 66%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles37-lengths8] PASSED [ 66%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles37-lengths9] PASSED [ 66%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles37-lengths10] PASSED [ 66%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles37-lengths11] PASSED [ 66%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles37-lengths12] PASSED [ 66%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles37-lengths13] PASSED [ 66%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles37-lengths14] PASSED [ 66%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles37-lengths15] PASSED [ 66%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles37-lengths16] PASSED [ 66%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles37-lengths17] PASSED [ 66%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles37-lengths18] PASSED [ 66%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles37-lengths19] PASSED [ 66%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles38-lengths0] PASSED [ 66%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles38-lengths1] PASSED [ 66%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles38-lengths2] PASSED [ 66%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles38-lengths3] PASSED [ 66%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles38-lengths4] PASSED [ 66%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles38-lengths5] PASSED [ 66%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles38-lengths6] PASSED [ 66%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles38-lengths7] PASSED [ 66%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles38-lengths8] PASSED [ 66%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles38-lengths9] PASSED [ 66%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles38-lengths10] PASSED [ 66%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles38-lengths11] PASSED [ 66%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles38-lengths12] PASSED [ 66%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles38-lengths13] PASSED [ 66%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles38-lengths14] PASSED [ 66%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles38-lengths15] PASSED [ 66%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles38-lengths16] PASSED [ 66%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles38-lengths17] PASSED [ 66%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles38-lengths18] PASSED [ 66%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles38-lengths19] PASSED [ 66%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles39-lengths0] PASSED [ 66%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles39-lengths1] PASSED [ 66%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles39-lengths2] PASSED [ 66%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles39-lengths3] PASSED [ 66%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles39-lengths4] PASSED [ 66%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles39-lengths5] PASSED [ 66%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles39-lengths6] PASSED [ 66%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles39-lengths7] PASSED [ 66%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles39-lengths8] PASSED [ 66%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles39-lengths9] PASSED [ 66%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles39-lengths10] PASSED [ 66%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles39-lengths11] PASSED [ 66%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles39-lengths12] PASSED [ 66%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles39-lengths13] PASSED [ 66%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles39-lengths14] PASSED [ 66%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles39-lengths15] PASSED [ 66%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles39-lengths16] PASSED [ 66%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles39-lengths17] PASSED [ 66%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles39-lengths18] PASSED [ 66%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles39-lengths19] PASSED [ 66%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles40-lengths0] PASSED [ 66%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles40-lengths1] PASSED [ 66%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles40-lengths2] PASSED [ 66%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles40-lengths3] PASSED [ 66%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles40-lengths4] PASSED [ 66%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles40-lengths5] PASSED [ 66%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles40-lengths6] PASSED [ 66%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles40-lengths7] PASSED [ 66%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles40-lengths8] PASSED [ 66%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles40-lengths9] PASSED [ 66%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles40-lengths10] PASSED [ 66%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles40-lengths11] PASSED [ 66%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles40-lengths12] PASSED [ 66%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles40-lengths13] PASSED [ 66%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles40-lengths14] PASSED [ 66%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles40-lengths15] PASSED [ 66%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles40-lengths16] PASSED [ 66%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles40-lengths17] PASSED [ 66%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles40-lengths18] PASSED [ 66%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles40-lengths19] PASSED [ 66%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles41-lengths0] PASSED [ 66%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles41-lengths1] PASSED [ 66%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles41-lengths2] PASSED [ 66%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles41-lengths3] PASSED [ 66%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles41-lengths4] PASSED [ 66%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles41-lengths5] PASSED [ 66%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles41-lengths6] PASSED [ 66%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles41-lengths7] PASSED [ 66%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles41-lengths8] PASSED [ 66%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles41-lengths9] PASSED [ 66%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles41-lengths10] PASSED [ 66%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles41-lengths11] PASSED [ 66%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles41-lengths12] PASSED [ 66%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles41-lengths13] PASSED [ 66%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles41-lengths14] PASSED [ 66%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles41-lengths15] PASSED [ 66%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles41-lengths16] PASSED [ 66%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles41-lengths17] PASSED [ 66%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles41-lengths18] PASSED [ 66%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles41-lengths19] PASSED [ 66%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles42-lengths0] PASSED [ 66%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles42-lengths1] PASSED [ 66%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles42-lengths2] PASSED [ 66%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles42-lengths3] PASSED [ 66%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles42-lengths4] PASSED [ 66%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles42-lengths5] PASSED [ 66%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles42-lengths6] PASSED [ 66%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles42-lengths7] PASSED [ 66%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles42-lengths8] PASSED [ 66%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles42-lengths9] PASSED [ 66%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles42-lengths10] PASSED [ 66%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles42-lengths11] PASSED [ 66%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles42-lengths12] PASSED [ 66%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles42-lengths13] PASSED [ 66%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles42-lengths14] PASSED [ 66%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles42-lengths15] PASSED [ 66%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles42-lengths16] PASSED [ 66%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles42-lengths17] PASSED [ 66%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles42-lengths18] PASSED [ 66%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles42-lengths19] PASSED [ 66%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles43-lengths0] PASSED [ 66%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles43-lengths1] PASSED [ 66%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles43-lengths2] PASSED [ 66%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles43-lengths3] PASSED [ 66%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles43-lengths4] PASSED [ 66%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles43-lengths5] PASSED [ 66%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles43-lengths6] PASSED [ 66%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles43-lengths7] PASSED [ 66%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles43-lengths8] PASSED [ 66%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles43-lengths9] PASSED [ 66%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles43-lengths10] PASSED [ 66%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles43-lengths11] PASSED [ 66%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles43-lengths12] PASSED [ 66%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles43-lengths13] PASSED [ 66%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles43-lengths14] PASSED [ 66%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles43-lengths15] PASSED [ 66%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles43-lengths16] PASSED [ 66%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles43-lengths17] PASSED [ 66%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles43-lengths18] PASSED [ 66%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles43-lengths19] PASSED [ 66%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles44-lengths0] PASSED [ 66%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles44-lengths1] PASSED [ 66%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles44-lengths2] PASSED [ 66%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles44-lengths3] PASSED [ 66%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles44-lengths4] PASSED [ 66%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles44-lengths5] PASSED [ 66%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles44-lengths6] PASSED [ 66%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles44-lengths7] PASSED [ 66%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles44-lengths8] PASSED [ 66%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles44-lengths9] PASSED [ 66%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles44-lengths10] PASSED [ 66%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles44-lengths11] PASSED [ 66%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles44-lengths12] PASSED [ 66%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles44-lengths13] PASSED [ 66%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles44-lengths14] PASSED [ 66%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles44-lengths15] PASSED [ 66%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles44-lengths16] PASSED [ 66%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles44-lengths17] PASSED [ 66%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles44-lengths18] PASSED [ 66%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles44-lengths19] PASSED [ 66%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles45-lengths0] PASSED [ 66%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles45-lengths1] PASSED [ 66%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles45-lengths2] PASSED [ 66%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles45-lengths3] PASSED [ 66%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles45-lengths4] PASSED [ 66%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles45-lengths5] PASSED [ 66%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles45-lengths6] PASSED [ 66%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles45-lengths7] PASSED [ 66%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles45-lengths8] PASSED [ 66%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles45-lengths9] PASSED [ 66%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles45-lengths10] PASSED [ 66%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles45-lengths11] PASSED [ 66%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles45-lengths12] PASSED [ 66%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles45-lengths13] PASSED [ 66%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles45-lengths14] PASSED [ 66%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles45-lengths15] PASSED [ 67%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles45-lengths16] PASSED [ 67%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles45-lengths17] PASSED [ 67%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles45-lengths18] PASSED [ 67%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles45-lengths19] PASSED [ 67%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles46-lengths0] PASSED [ 67%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles46-lengths1] PASSED [ 67%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles46-lengths2] PASSED [ 67%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles46-lengths3] PASSED [ 67%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles46-lengths4] PASSED [ 67%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles46-lengths5] PASSED [ 67%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles46-lengths6] PASSED [ 67%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles46-lengths7] PASSED [ 67%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles46-lengths8] PASSED [ 67%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles46-lengths9] PASSED [ 67%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles46-lengths10] PASSED [ 67%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles46-lengths11] PASSED [ 67%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles46-lengths12] PASSED [ 67%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles46-lengths13] PASSED [ 67%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles46-lengths14] PASSED [ 67%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles46-lengths15] PASSED [ 67%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles46-lengths16] PASSED [ 67%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles46-lengths17] PASSED [ 67%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles46-lengths18] PASSED [ 67%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles46-lengths19] PASSED [ 67%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles47-lengths0] PASSED [ 67%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles47-lengths1] PASSED [ 67%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles47-lengths2] PASSED [ 67%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles47-lengths3] PASSED [ 67%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles47-lengths4] PASSED [ 67%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles47-lengths5] PASSED [ 67%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles47-lengths6] PASSED [ 67%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles47-lengths7] PASSED [ 67%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles47-lengths8] PASSED [ 67%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles47-lengths9] PASSED [ 67%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles47-lengths10] PASSED [ 67%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles47-lengths11] PASSED [ 67%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles47-lengths12] PASSED [ 67%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles47-lengths13] PASSED [ 67%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles47-lengths14] PASSED [ 67%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles47-lengths15] PASSED [ 67%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles47-lengths16] PASSED [ 67%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles47-lengths17] PASSED [ 67%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles47-lengths18] PASSED [ 67%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles47-lengths19] PASSED [ 67%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles48-lengths0] PASSED [ 67%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles48-lengths1] PASSED [ 67%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles48-lengths2] PASSED [ 67%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles48-lengths3] PASSED [ 67%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles48-lengths4] PASSED [ 67%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles48-lengths5] PASSED [ 67%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles48-lengths6] PASSED [ 67%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles48-lengths7] PASSED [ 67%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles48-lengths8] PASSED [ 67%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles48-lengths9] PASSED [ 67%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles48-lengths10] PASSED [ 67%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles48-lengths11] PASSED [ 67%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles48-lengths12] PASSED [ 67%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles48-lengths13] PASSED [ 67%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles48-lengths14] PASSED [ 67%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles48-lengths15] PASSED [ 67%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles48-lengths16] PASSED [ 67%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles48-lengths17] PASSED [ 67%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles48-lengths18] PASSED [ 67%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles48-lengths19] PASSED [ 67%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles49-lengths0] PASSED [ 67%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles49-lengths1] PASSED [ 67%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles49-lengths2] PASSED [ 67%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles49-lengths3] PASSED [ 67%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles49-lengths4] PASSED [ 67%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles49-lengths5] PASSED [ 67%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles49-lengths6] PASSED [ 67%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles49-lengths7] PASSED [ 67%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles49-lengths8] PASSED [ 67%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles49-lengths9] PASSED [ 67%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles49-lengths10] PASSED [ 67%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles49-lengths11] PASSED [ 67%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles49-lengths12] PASSED [ 67%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles49-lengths13] PASSED [ 67%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles49-lengths14] PASSED [ 67%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles49-lengths15] PASSED [ 67%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles49-lengths16] PASSED [ 67%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles49-lengths17] PASSED [ 67%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles49-lengths18] PASSED [ 67%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles49-lengths19] PASSED [ 67%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles50-lengths0] PASSED [ 67%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles50-lengths1] PASSED [ 67%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles50-lengths2] PASSED [ 67%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles50-lengths3] PASSED [ 67%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles50-lengths4] PASSED [ 67%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles50-lengths5] PASSED [ 67%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles50-lengths6] PASSED [ 67%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles50-lengths7] PASSED [ 67%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles50-lengths8] PASSED [ 67%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles50-lengths9] PASSED [ 67%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles50-lengths10] PASSED [ 67%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles50-lengths11] PASSED [ 67%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles50-lengths12] PASSED [ 67%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles50-lengths13] PASSED [ 67%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles50-lengths14] PASSED [ 67%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles50-lengths15] PASSED [ 67%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles50-lengths16] PASSED [ 67%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles50-lengths17] PASSED [ 67%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles50-lengths18] PASSED [ 67%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles50-lengths19] PASSED [ 67%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles51-lengths0] PASSED [ 67%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles51-lengths1] PASSED [ 67%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles51-lengths2] PASSED [ 67%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles51-lengths3] PASSED [ 67%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles51-lengths4] PASSED [ 67%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles51-lengths5] PASSED [ 67%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles51-lengths6] PASSED [ 67%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles51-lengths7] PASSED [ 67%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles51-lengths8] PASSED [ 67%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles51-lengths9] PASSED [ 67%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles51-lengths10] PASSED [ 67%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles51-lengths11] PASSED [ 67%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles51-lengths12] PASSED [ 67%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles51-lengths13] PASSED [ 67%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles51-lengths14] PASSED [ 67%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles51-lengths15] PASSED [ 67%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles51-lengths16] PASSED [ 67%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles51-lengths17] PASSED [ 67%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles51-lengths18] PASSED [ 67%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles51-lengths19] PASSED [ 67%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles52-lengths0] PASSED [ 67%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles52-lengths1] PASSED [ 67%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles52-lengths2] PASSED [ 67%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles52-lengths3] PASSED [ 67%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles52-lengths4] PASSED [ 67%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles52-lengths5] PASSED [ 67%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles52-lengths6] PASSED [ 67%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles52-lengths7] PASSED [ 67%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles52-lengths8] PASSED [ 67%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles52-lengths9] PASSED [ 67%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles52-lengths10] PASSED [ 67%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles52-lengths11] PASSED [ 67%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles52-lengths12] PASSED [ 67%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles52-lengths13] PASSED [ 67%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles52-lengths14] PASSED [ 67%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles52-lengths15] PASSED [ 67%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles52-lengths16] PASSED [ 67%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles52-lengths17] PASSED [ 67%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles52-lengths18] PASSED [ 67%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles52-lengths19] PASSED [ 67%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles53-lengths0] PASSED [ 67%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles53-lengths1] PASSED [ 67%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles53-lengths2] PASSED [ 67%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles53-lengths3] PASSED [ 67%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles53-lengths4] PASSED [ 67%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles53-lengths5] PASSED [ 67%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles53-lengths6] PASSED [ 67%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles53-lengths7] PASSED [ 67%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles53-lengths8] PASSED [ 67%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles53-lengths9] PASSED [ 67%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles53-lengths10] PASSED [ 67%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles53-lengths11] PASSED [ 67%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles53-lengths12] PASSED [ 67%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles53-lengths13] PASSED [ 67%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles53-lengths14] PASSED [ 67%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles53-lengths15] PASSED [ 67%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles53-lengths16] PASSED [ 67%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles53-lengths17] PASSED [ 67%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles53-lengths18] PASSED [ 67%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles53-lengths19] PASSED [ 67%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles54-lengths0] PASSED [ 67%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles54-lengths1] PASSED [ 67%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles54-lengths2] PASSED [ 67%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles54-lengths3] PASSED [ 67%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles54-lengths4] PASSED [ 67%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles54-lengths5] PASSED [ 67%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles54-lengths6] PASSED [ 67%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles54-lengths7] PASSED [ 67%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles54-lengths8] PASSED [ 67%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles54-lengths9] PASSED [ 67%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles54-lengths10] PASSED [ 67%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles54-lengths11] PASSED [ 67%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles54-lengths12] PASSED [ 67%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles54-lengths13] PASSED [ 67%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles54-lengths14] PASSED [ 67%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles54-lengths15] PASSED [ 67%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles54-lengths16] PASSED [ 67%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles54-lengths17] PASSED [ 67%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles54-lengths18] PASSED [ 67%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles54-lengths19] PASSED [ 68%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles55-lengths0] PASSED [ 68%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles55-lengths1] PASSED [ 68%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles55-lengths2] PASSED [ 68%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles55-lengths3] PASSED [ 68%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles55-lengths4] PASSED [ 68%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles55-lengths5] PASSED [ 68%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles55-lengths6] PASSED [ 68%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles55-lengths7] PASSED [ 68%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles55-lengths8] PASSED [ 68%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles55-lengths9] PASSED [ 68%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles55-lengths10] PASSED [ 68%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles55-lengths11] PASSED [ 68%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles55-lengths12] PASSED [ 68%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles55-lengths13] PASSED [ 68%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles55-lengths14] PASSED [ 68%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles55-lengths15] PASSED [ 68%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles55-lengths16] PASSED [ 68%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles55-lengths17] PASSED [ 68%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles55-lengths18] PASSED [ 68%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles55-lengths19] PASSED [ 68%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles56-lengths0] PASSED [ 68%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles56-lengths1] PASSED [ 68%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles56-lengths2] PASSED [ 68%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles56-lengths3] PASSED [ 68%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles56-lengths4] PASSED [ 68%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles56-lengths5] PASSED [ 68%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles56-lengths6] PASSED [ 68%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles56-lengths7] PASSED [ 68%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles56-lengths8] PASSED [ 68%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles56-lengths9] PASSED [ 68%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles56-lengths10] PASSED [ 68%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles56-lengths11] PASSED [ 68%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles56-lengths12] PASSED [ 68%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles56-lengths13] PASSED [ 68%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles56-lengths14] PASSED [ 68%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles56-lengths15] PASSED [ 68%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles56-lengths16] PASSED [ 68%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles56-lengths17] PASSED [ 68%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles56-lengths18] PASSED [ 68%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles56-lengths19] PASSED [ 68%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles57-lengths0] PASSED [ 68%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles57-lengths1] PASSED [ 68%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles57-lengths2] PASSED [ 68%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles57-lengths3] PASSED [ 68%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles57-lengths4] PASSED [ 68%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles57-lengths5] PASSED [ 68%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles57-lengths6] PASSED [ 68%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles57-lengths7] PASSED [ 68%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles57-lengths8] PASSED [ 68%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles57-lengths9] PASSED [ 68%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles57-lengths10] PASSED [ 68%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles57-lengths11] PASSED [ 68%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles57-lengths12] PASSED [ 68%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles57-lengths13] PASSED [ 68%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles57-lengths14] PASSED [ 68%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles57-lengths15] PASSED [ 68%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles57-lengths16] PASSED [ 68%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles57-lengths17] PASSED [ 68%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles57-lengths18] PASSED [ 68%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles57-lengths19] PASSED [ 68%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles58-lengths0] PASSED [ 68%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles58-lengths1] PASSED [ 68%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles58-lengths2] PASSED [ 68%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles58-lengths3] PASSED [ 68%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles58-lengths4] PASSED [ 68%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles58-lengths5] PASSED [ 68%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles58-lengths6] PASSED [ 68%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles58-lengths7] PASSED [ 68%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles58-lengths8] PASSED [ 68%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles58-lengths9] PASSED [ 68%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles58-lengths10] PASSED [ 68%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles58-lengths11] PASSED [ 68%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles58-lengths12] PASSED [ 68%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles58-lengths13] PASSED [ 68%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles58-lengths14] PASSED [ 68%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles58-lengths15] PASSED [ 68%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles58-lengths16] PASSED [ 68%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles58-lengths17] PASSED [ 68%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles58-lengths18] PASSED [ 68%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles58-lengths19] PASSED [ 68%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles59-lengths0] PASSED [ 68%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles59-lengths1] PASSED [ 68%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles59-lengths2] PASSED [ 68%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles59-lengths3] PASSED [ 68%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles59-lengths4] PASSED [ 68%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles59-lengths5] PASSED [ 68%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles59-lengths6] PASSED [ 68%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles59-lengths7] PASSED [ 68%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles59-lengths8] PASSED [ 68%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles59-lengths9] PASSED [ 68%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles59-lengths10] PASSED [ 68%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles59-lengths11] PASSED [ 68%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles59-lengths12] PASSED [ 68%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles59-lengths13] PASSED [ 68%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles59-lengths14] PASSED [ 68%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles59-lengths15] PASSED [ 68%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles59-lengths16] PASSED [ 68%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles59-lengths17] PASSED [ 68%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles59-lengths18] PASSED [ 68%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles59-lengths19] PASSED [ 68%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles60-lengths0] PASSED [ 68%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles60-lengths1] PASSED [ 68%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles60-lengths2] PASSED [ 68%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles60-lengths3] PASSED [ 68%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles60-lengths4] PASSED [ 68%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles60-lengths5] PASSED [ 68%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles60-lengths6] PASSED [ 68%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles60-lengths7] PASSED [ 68%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles60-lengths8] PASSED [ 68%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles60-lengths9] PASSED [ 68%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles60-lengths10] PASSED [ 68%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles60-lengths11] PASSED [ 68%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles60-lengths12] PASSED [ 68%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles60-lengths13] PASSED [ 68%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles60-lengths14] PASSED [ 68%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles60-lengths15] PASSED [ 68%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles60-lengths16] PASSED [ 68%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles60-lengths17] PASSED [ 68%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles60-lengths18] PASSED [ 68%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles60-lengths19] PASSED [ 68%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles61-lengths0] PASSED [ 68%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles61-lengths1] PASSED [ 68%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles61-lengths2] PASSED [ 68%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles61-lengths3] PASSED [ 68%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles61-lengths4] PASSED [ 68%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles61-lengths5] PASSED [ 68%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles61-lengths6] PASSED [ 68%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles61-lengths7] PASSED [ 68%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles61-lengths8] PASSED [ 68%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles61-lengths9] PASSED [ 68%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles61-lengths10] PASSED [ 68%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles61-lengths11] PASSED [ 68%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles61-lengths12] PASSED [ 68%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles61-lengths13] PASSED [ 68%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles61-lengths14] PASSED [ 68%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles61-lengths15] PASSED [ 68%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles61-lengths16] PASSED [ 68%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles61-lengths17] PASSED [ 68%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles61-lengths18] PASSED [ 68%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles61-lengths19] PASSED [ 68%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles62-lengths0] PASSED [ 68%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles62-lengths1] PASSED [ 68%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles62-lengths2] PASSED [ 68%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles62-lengths3] PASSED [ 68%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles62-lengths4] PASSED [ 68%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles62-lengths5] PASSED [ 68%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles62-lengths6] PASSED [ 68%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles62-lengths7] PASSED [ 68%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles62-lengths8] PASSED [ 68%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles62-lengths9] PASSED [ 68%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles62-lengths10] PASSED [ 68%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles62-lengths11] PASSED [ 68%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles62-lengths12] PASSED [ 68%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles62-lengths13] PASSED [ 68%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles62-lengths14] PASSED [ 68%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles62-lengths15] PASSED [ 68%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles62-lengths16] PASSED [ 68%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles62-lengths17] PASSED [ 68%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles62-lengths18] PASSED [ 68%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles62-lengths19] PASSED [ 68%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles63-lengths0] PASSED [ 68%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles63-lengths1] PASSED [ 68%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles63-lengths2] PASSED [ 68%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles63-lengths3] PASSED [ 68%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles63-lengths4] PASSED [ 68%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles63-lengths5] PASSED [ 68%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles63-lengths6] PASSED [ 68%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles63-lengths7] PASSED [ 68%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles63-lengths8] PASSED [ 68%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles63-lengths9] PASSED [ 68%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles63-lengths10] PASSED [ 68%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles63-lengths11] PASSED [ 68%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles63-lengths12] PASSED [ 68%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles63-lengths13] PASSED [ 68%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles63-lengths14] PASSED [ 68%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles63-lengths15] PASSED [ 68%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles63-lengths16] PASSED [ 68%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles63-lengths17] PASSED [ 68%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles63-lengths18] PASSED [ 68%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles63-lengths19] PASSED [ 68%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles64-lengths0] PASSED [ 68%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles64-lengths1] PASSED [ 68%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles64-lengths2] PASSED [ 68%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles64-lengths3] PASSED [ 68%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles64-lengths4] PASSED [ 69%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles64-lengths5] PASSED [ 69%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles64-lengths6] PASSED [ 69%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles64-lengths7] PASSED [ 69%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles64-lengths8] PASSED [ 69%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles64-lengths9] PASSED [ 69%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles64-lengths10] PASSED [ 69%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles64-lengths11] PASSED [ 69%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles64-lengths12] PASSED [ 69%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles64-lengths13] PASSED [ 69%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles64-lengths14] PASSED [ 69%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles64-lengths15] PASSED [ 69%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles64-lengths16] PASSED [ 69%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles64-lengths17] PASSED [ 69%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles64-lengths18] PASSED [ 69%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles64-lengths19] PASSED [ 69%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles65-lengths0] PASSED [ 69%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles65-lengths1] PASSED [ 69%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles65-lengths2] PASSED [ 69%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles65-lengths3] PASSED [ 69%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles65-lengths4] PASSED [ 69%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles65-lengths5] PASSED [ 69%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles65-lengths6] PASSED [ 69%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles65-lengths7] PASSED [ 69%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles65-lengths8] PASSED [ 69%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles65-lengths9] PASSED [ 69%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles65-lengths10] PASSED [ 69%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles65-lengths11] PASSED [ 69%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles65-lengths12] PASSED [ 69%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles65-lengths13] PASSED [ 69%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles65-lengths14] PASSED [ 69%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles65-lengths15] PASSED [ 69%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles65-lengths16] PASSED [ 69%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles65-lengths17] PASSED [ 69%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles65-lengths18] PASSED [ 69%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles65-lengths19] PASSED [ 69%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles66-lengths0] PASSED [ 69%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles66-lengths1] PASSED [ 69%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles66-lengths2] PASSED [ 69%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles66-lengths3] PASSED [ 69%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles66-lengths4] PASSED [ 69%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles66-lengths5] PASSED [ 69%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles66-lengths6] PASSED [ 69%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles66-lengths7] PASSED [ 69%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles66-lengths8] PASSED [ 69%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles66-lengths9] PASSED [ 69%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles66-lengths10] PASSED [ 69%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles66-lengths11] PASSED [ 69%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles66-lengths12] PASSED [ 69%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles66-lengths13] PASSED [ 69%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles66-lengths14] PASSED [ 69%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles66-lengths15] PASSED [ 69%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles66-lengths16] PASSED [ 69%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles66-lengths17] PASSED [ 69%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles66-lengths18] PASSED [ 69%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles66-lengths19] PASSED [ 69%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles67-lengths0] PASSED [ 69%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles67-lengths1] PASSED [ 69%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles67-lengths2] PASSED [ 69%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles67-lengths3] PASSED [ 69%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles67-lengths4] PASSED [ 69%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles67-lengths5] PASSED [ 69%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles67-lengths6] PASSED [ 69%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles67-lengths7] PASSED [ 69%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles67-lengths8] PASSED [ 69%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles67-lengths9] PASSED [ 69%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles67-lengths10] PASSED [ 69%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles67-lengths11] PASSED [ 69%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles67-lengths12] PASSED [ 69%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles67-lengths13] PASSED [ 69%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles67-lengths14] PASSED [ 69%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles67-lengths15] PASSED [ 69%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles67-lengths16] PASSED [ 69%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles67-lengths17] PASSED [ 69%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles67-lengths18] PASSED [ 69%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles67-lengths19] PASSED [ 69%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles68-lengths0] PASSED [ 69%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles68-lengths1] PASSED [ 69%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles68-lengths2] PASSED [ 69%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles68-lengths3] PASSED [ 69%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles68-lengths4] PASSED [ 69%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles68-lengths5] PASSED [ 69%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles68-lengths6] PASSED [ 69%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles68-lengths7] PASSED [ 69%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles68-lengths8] PASSED [ 69%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles68-lengths9] PASSED [ 69%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles68-lengths10] PASSED [ 69%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles68-lengths11] PASSED [ 69%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles68-lengths12] PASSED [ 69%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles68-lengths13] PASSED [ 69%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles68-lengths14] PASSED [ 69%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles68-lengths15] PASSED [ 69%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles68-lengths16] PASSED [ 69%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles68-lengths17] PASSED [ 69%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles68-lengths18] PASSED [ 69%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles68-lengths19] PASSED [ 69%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles69-lengths0] PASSED [ 69%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles69-lengths1] PASSED [ 69%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles69-lengths2] PASSED [ 69%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles69-lengths3] PASSED [ 69%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles69-lengths4] PASSED [ 69%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles69-lengths5] PASSED [ 69%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles69-lengths6] PASSED [ 69%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles69-lengths7] PASSED [ 69%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles69-lengths8] PASSED [ 69%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles69-lengths9] PASSED [ 69%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles69-lengths10] PASSED [ 69%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles69-lengths11] PASSED [ 69%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles69-lengths12] PASSED [ 69%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles69-lengths13] PASSED [ 69%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles69-lengths14] PASSED [ 69%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles69-lengths15] PASSED [ 69%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles69-lengths16] PASSED [ 69%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles69-lengths17] PASSED [ 69%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles69-lengths18] PASSED [ 69%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles69-lengths19] PASSED [ 69%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles70-lengths0] PASSED [ 69%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles70-lengths1] PASSED [ 69%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles70-lengths2] PASSED [ 69%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles70-lengths3] PASSED [ 69%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles70-lengths4] PASSED [ 69%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles70-lengths5] PASSED [ 69%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles70-lengths6] PASSED [ 69%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles70-lengths7] PASSED [ 69%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles70-lengths8] PASSED [ 69%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles70-lengths9] PASSED [ 69%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles70-lengths10] PASSED [ 69%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles70-lengths11] PASSED [ 69%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles70-lengths12] PASSED [ 69%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles70-lengths13] PASSED [ 69%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles70-lengths14] PASSED [ 69%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles70-lengths15] PASSED [ 69%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles70-lengths16] PASSED [ 69%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles70-lengths17] PASSED [ 69%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles70-lengths18] PASSED [ 69%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles70-lengths19] PASSED [ 69%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles71-lengths0] PASSED [ 69%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles71-lengths1] PASSED [ 69%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles71-lengths2] PASSED [ 69%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles71-lengths3] PASSED [ 69%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles71-lengths4] PASSED [ 69%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles71-lengths5] PASSED [ 69%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles71-lengths6] PASSED [ 69%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles71-lengths7] PASSED [ 69%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles71-lengths8] PASSED [ 69%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles71-lengths9] PASSED [ 69%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles71-lengths10] PASSED [ 69%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles71-lengths11] PASSED [ 69%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles71-lengths12] PASSED [ 69%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles71-lengths13] PASSED [ 69%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles71-lengths14] PASSED [ 69%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles71-lengths15] PASSED [ 69%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles71-lengths16] PASSED [ 69%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles71-lengths17] PASSED [ 69%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles71-lengths18] PASSED [ 69%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles71-lengths19] PASSED [ 69%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles72-lengths0] PASSED [ 69%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles72-lengths1] PASSED [ 69%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles72-lengths2] PASSED [ 69%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles72-lengths3] PASSED [ 69%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles72-lengths4] PASSED [ 69%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles72-lengths5] PASSED [ 69%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles72-lengths6] PASSED [ 69%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles72-lengths7] PASSED [ 69%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles72-lengths8] PASSED [ 69%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles72-lengths9] PASSED [ 69%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles72-lengths10] PASSED [ 69%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles72-lengths11] PASSED [ 69%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles72-lengths12] PASSED [ 69%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles72-lengths13] PASSED [ 69%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles72-lengths14] PASSED [ 69%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles72-lengths15] PASSED [ 69%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles72-lengths16] PASSED [ 69%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles72-lengths17] PASSED [ 69%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles72-lengths18] PASSED [ 69%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles72-lengths19] PASSED [ 69%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles73-lengths0] PASSED [ 69%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles73-lengths1] PASSED [ 69%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles73-lengths2] PASSED [ 69%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles73-lengths3] PASSED [ 69%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles73-lengths4] PASSED [ 69%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles73-lengths5] PASSED [ 69%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles73-lengths6] PASSED [ 69%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles73-lengths7] PASSED [ 69%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles73-lengths8] PASSED [ 70%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles73-lengths9] PASSED [ 70%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles73-lengths10] PASSED [ 70%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles73-lengths11] PASSED [ 70%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles73-lengths12] PASSED [ 70%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles73-lengths13] PASSED [ 70%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles73-lengths14] PASSED [ 70%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles73-lengths15] PASSED [ 70%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles73-lengths16] PASSED [ 70%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles73-lengths17] PASSED [ 70%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles73-lengths18] PASSED [ 70%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles73-lengths19] PASSED [ 70%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles74-lengths0] PASSED [ 70%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles74-lengths1] PASSED [ 70%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles74-lengths2] PASSED [ 70%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles74-lengths3] PASSED [ 70%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles74-lengths4] PASSED [ 70%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles74-lengths5] PASSED [ 70%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles74-lengths6] PASSED [ 70%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles74-lengths7] PASSED [ 70%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles74-lengths8] PASSED [ 70%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles74-lengths9] PASSED [ 70%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles74-lengths10] PASSED [ 70%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles74-lengths11] PASSED [ 70%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles74-lengths12] PASSED [ 70%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles74-lengths13] PASSED [ 70%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles74-lengths14] PASSED [ 70%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles74-lengths15] PASSED [ 70%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles74-lengths16] PASSED [ 70%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles74-lengths17] PASSED [ 70%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles74-lengths18] PASSED [ 70%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles74-lengths19] PASSED [ 70%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles75-lengths0] PASSED [ 70%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles75-lengths1] PASSED [ 70%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles75-lengths2] PASSED [ 70%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles75-lengths3] PASSED [ 70%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles75-lengths4] PASSED [ 70%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles75-lengths5] PASSED [ 70%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles75-lengths6] PASSED [ 70%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles75-lengths7] PASSED [ 70%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles75-lengths8] PASSED [ 70%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles75-lengths9] PASSED [ 70%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles75-lengths10] PASSED [ 70%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles75-lengths11] PASSED [ 70%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles75-lengths12] PASSED [ 70%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles75-lengths13] PASSED [ 70%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles75-lengths14] PASSED [ 70%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles75-lengths15] PASSED [ 70%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles75-lengths16] PASSED [ 70%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles75-lengths17] PASSED [ 70%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles75-lengths18] PASSED [ 70%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles75-lengths19] PASSED [ 70%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles76-lengths0] PASSED [ 70%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles76-lengths1] PASSED [ 70%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles76-lengths2] PASSED [ 70%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles76-lengths3] PASSED [ 70%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles76-lengths4] PASSED [ 70%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles76-lengths5] PASSED [ 70%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles76-lengths6] PASSED [ 70%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles76-lengths7] PASSED [ 70%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles76-lengths8] PASSED [ 70%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles76-lengths9] PASSED [ 70%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles76-lengths10] PASSED [ 70%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles76-lengths11] PASSED [ 70%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles76-lengths12] PASSED [ 70%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles76-lengths13] PASSED [ 70%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles76-lengths14] PASSED [ 70%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles76-lengths15] PASSED [ 70%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles76-lengths16] PASSED [ 70%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles76-lengths17] PASSED [ 70%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles76-lengths18] PASSED [ 70%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles76-lengths19] PASSED [ 70%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles77-lengths0] PASSED [ 70%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles77-lengths1] PASSED [ 70%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles77-lengths2] PASSED [ 70%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles77-lengths3] PASSED [ 70%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles77-lengths4] PASSED [ 70%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles77-lengths5] PASSED [ 70%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles77-lengths6] PASSED [ 70%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles77-lengths7] PASSED [ 70%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles77-lengths8] PASSED [ 70%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles77-lengths9] PASSED [ 70%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles77-lengths10] PASSED [ 70%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles77-lengths11] PASSED [ 70%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles77-lengths12] PASSED [ 70%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles77-lengths13] PASSED [ 70%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles77-lengths14] PASSED [ 70%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles77-lengths15] PASSED [ 70%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles77-lengths16] PASSED [ 70%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles77-lengths17] PASSED [ 70%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles77-lengths18] PASSED [ 70%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles77-lengths19] PASSED [ 70%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles78-lengths0] PASSED [ 70%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles78-lengths1] PASSED [ 70%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles78-lengths2] PASSED [ 70%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles78-lengths3] PASSED [ 70%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles78-lengths4] PASSED [ 70%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles78-lengths5] PASSED [ 70%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles78-lengths6] PASSED [ 70%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles78-lengths7] PASSED [ 70%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles78-lengths8] PASSED [ 70%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles78-lengths9] PASSED [ 70%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles78-lengths10] PASSED [ 70%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles78-lengths11] PASSED [ 70%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles78-lengths12] PASSED [ 70%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles78-lengths13] PASSED [ 70%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles78-lengths14] PASSED [ 70%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles78-lengths15] PASSED [ 70%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles78-lengths16] PASSED [ 70%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles78-lengths17] PASSED [ 70%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles78-lengths18] PASSED [ 70%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles78-lengths19] PASSED [ 70%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles79-lengths0] PASSED [ 70%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles79-lengths1] PASSED [ 70%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles79-lengths2] PASSED [ 70%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles79-lengths3] PASSED [ 70%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles79-lengths4] PASSED [ 70%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles79-lengths5] PASSED [ 70%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles79-lengths6] PASSED [ 70%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles79-lengths7] PASSED [ 70%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles79-lengths8] PASSED [ 70%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles79-lengths9] PASSED [ 70%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles79-lengths10] PASSED [ 70%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles79-lengths11] PASSED [ 70%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles79-lengths12] PASSED [ 70%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles79-lengths13] PASSED [ 70%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles79-lengths14] PASSED [ 70%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles79-lengths15] PASSED [ 70%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles79-lengths16] PASSED [ 70%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles79-lengths17] PASSED [ 70%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles79-lengths18] PASSED [ 70%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles79-lengths19] PASSED [ 70%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles80-lengths0] PASSED [ 70%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles80-lengths1] PASSED [ 70%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles80-lengths2] PASSED [ 70%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles80-lengths3] PASSED [ 70%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles80-lengths4] PASSED [ 70%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles80-lengths5] PASSED [ 70%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles80-lengths6] PASSED [ 70%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles80-lengths7] PASSED [ 70%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles80-lengths8] PASSED [ 70%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles80-lengths9] PASSED [ 70%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles80-lengths10] PASSED [ 70%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles80-lengths11] PASSED [ 70%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles80-lengths12] PASSED [ 70%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles80-lengths13] PASSED [ 70%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles80-lengths14] PASSED [ 70%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles80-lengths15] PASSED [ 70%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles80-lengths16] PASSED [ 70%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles80-lengths17] PASSED [ 70%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles80-lengths18] PASSED [ 70%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles80-lengths19] PASSED [ 70%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles81-lengths0] PASSED [ 70%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles81-lengths1] PASSED [ 70%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles81-lengths2] PASSED [ 70%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles81-lengths3] PASSED [ 70%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles81-lengths4] PASSED [ 70%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles81-lengths5] PASSED [ 70%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles81-lengths6] PASSED [ 70%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles81-lengths7] PASSED [ 70%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles81-lengths8] PASSED [ 70%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles81-lengths9] PASSED [ 70%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles81-lengths10] PASSED [ 70%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles81-lengths11] PASSED [ 70%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles81-lengths12] PASSED [ 70%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles81-lengths13] PASSED [ 70%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles81-lengths14] PASSED [ 70%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles81-lengths15] PASSED [ 70%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles81-lengths16] PASSED [ 70%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles81-lengths17] PASSED [ 70%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles81-lengths18] PASSED [ 70%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles81-lengths19] PASSED [ 70%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles82-lengths0] PASSED [ 70%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles82-lengths1] PASSED [ 70%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles82-lengths2] PASSED [ 70%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles82-lengths3] PASSED [ 70%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles82-lengths4] PASSED [ 70%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles82-lengths5] PASSED [ 70%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles82-lengths6] PASSED [ 70%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles82-lengths7] PASSED [ 70%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles82-lengths8] PASSED [ 70%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles82-lengths9] PASSED [ 70%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles82-lengths10] PASSED [ 70%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles82-lengths11] PASSED [ 70%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles82-lengths12] PASSED [ 71%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles82-lengths13] PASSED [ 71%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles82-lengths14] PASSED [ 71%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles82-lengths15] PASSED [ 71%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles82-lengths16] PASSED [ 71%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles82-lengths17] PASSED [ 71%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles82-lengths18] PASSED [ 71%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles82-lengths19] PASSED [ 71%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles83-lengths0] PASSED [ 71%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles83-lengths1] PASSED [ 71%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles83-lengths2] PASSED [ 71%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles83-lengths3] PASSED [ 71%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles83-lengths4] PASSED [ 71%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles83-lengths5] PASSED [ 71%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles83-lengths6] PASSED [ 71%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles83-lengths7] PASSED [ 71%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles83-lengths8] PASSED [ 71%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles83-lengths9] PASSED [ 71%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles83-lengths10] PASSED [ 71%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles83-lengths11] PASSED [ 71%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles83-lengths12] PASSED [ 71%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles83-lengths13] PASSED [ 71%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles83-lengths14] PASSED [ 71%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles83-lengths15] PASSED [ 71%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles83-lengths16] PASSED [ 71%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles83-lengths17] PASSED [ 71%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles83-lengths18] PASSED [ 71%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles83-lengths19] PASSED [ 71%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles0-lengths0] PASSED [ 71%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles0-lengths1] PASSED [ 71%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles0-lengths2] PASSED [ 71%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles0-lengths3] PASSED [ 71%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles0-lengths4] PASSED [ 71%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles0-lengths5] PASSED [ 71%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles0-lengths6] PASSED [ 71%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles0-lengths7] PASSED [ 71%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles0-lengths8] PASSED [ 71%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles0-lengths9] PASSED [ 71%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles0-lengths10] PASSED [ 71%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles0-lengths11] PASSED [ 71%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles0-lengths12] PASSED [ 71%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles0-lengths13] PASSED [ 71%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles0-lengths14] PASSED [ 71%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles0-lengths15] PASSED [ 71%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles0-lengths16] PASSED [ 71%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles0-lengths17] PASSED [ 71%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles0-lengths18] PASSED [ 71%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles0-lengths19] PASSED [ 71%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles1-lengths0] PASSED [ 71%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles1-lengths1] PASSED [ 71%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles1-lengths2] PASSED [ 71%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles1-lengths3] PASSED [ 71%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles1-lengths4] PASSED [ 71%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles1-lengths5] PASSED [ 71%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles1-lengths6] PASSED [ 71%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles1-lengths7] PASSED [ 71%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles1-lengths8] PASSED [ 71%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles1-lengths9] PASSED [ 71%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles1-lengths10] PASSED [ 71%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles1-lengths11] PASSED [ 71%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles1-lengths12] PASSED [ 71%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles1-lengths13] PASSED [ 71%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles1-lengths14] PASSED [ 71%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles1-lengths15] PASSED [ 71%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles1-lengths16] PASSED [ 71%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles1-lengths17] PASSED [ 71%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles1-lengths18] PASSED [ 71%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles1-lengths19] PASSED [ 71%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles2-lengths0] PASSED [ 71%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles2-lengths1] PASSED [ 71%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles2-lengths2] PASSED [ 71%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles2-lengths3] PASSED [ 71%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles2-lengths4] PASSED [ 71%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles2-lengths5] PASSED [ 71%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles2-lengths6] PASSED [ 71%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles2-lengths7] PASSED [ 71%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles2-lengths8] PASSED [ 71%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles2-lengths9] PASSED [ 71%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles2-lengths10] PASSED [ 71%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles2-lengths11] PASSED [ 71%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles2-lengths12] PASSED [ 71%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles2-lengths13] PASSED [ 71%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles2-lengths14] PASSED [ 71%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles2-lengths15] PASSED [ 71%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles2-lengths16] PASSED [ 71%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles2-lengths17] PASSED [ 71%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles2-lengths18] PASSED [ 71%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles2-lengths19] PASSED [ 71%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles3-lengths0] PASSED [ 71%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles3-lengths1] PASSED [ 71%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles3-lengths2] PASSED [ 71%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles3-lengths3] PASSED [ 71%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles3-lengths4] PASSED [ 71%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles3-lengths5] PASSED [ 71%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles3-lengths6] PASSED [ 71%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles3-lengths7] PASSED [ 71%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles3-lengths8] PASSED [ 71%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles3-lengths9] PASSED [ 71%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles3-lengths10] PASSED [ 71%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles3-lengths11] PASSED [ 71%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles3-lengths12] PASSED [ 71%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles3-lengths13] PASSED [ 71%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles3-lengths14] PASSED [ 71%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles3-lengths15] PASSED [ 71%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles3-lengths16] PASSED [ 71%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles3-lengths17] PASSED [ 71%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles3-lengths18] PASSED [ 71%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles3-lengths19] PASSED [ 71%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles4-lengths0] PASSED [ 71%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles4-lengths1] PASSED [ 71%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles4-lengths2] PASSED [ 71%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles4-lengths3] PASSED [ 71%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles4-lengths4] PASSED [ 71%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles4-lengths5] PASSED [ 71%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles4-lengths6] PASSED [ 71%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles4-lengths7] PASSED [ 71%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles4-lengths8] PASSED [ 71%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles4-lengths9] PASSED [ 71%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles4-lengths10] PASSED [ 71%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles4-lengths11] PASSED [ 71%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles4-lengths12] PASSED [ 71%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles4-lengths13] PASSED [ 71%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles4-lengths14] PASSED [ 71%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles4-lengths15] PASSED [ 71%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles4-lengths16] PASSED [ 71%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles4-lengths17] PASSED [ 71%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles4-lengths18] PASSED [ 71%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles4-lengths19] PASSED [ 71%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles5-lengths0] PASSED [ 71%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles5-lengths1] PASSED [ 71%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles5-lengths2] PASSED [ 71%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles5-lengths3] PASSED [ 71%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles5-lengths4] PASSED [ 71%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles5-lengths5] PASSED [ 71%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles5-lengths6] PASSED [ 71%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles5-lengths7] PASSED [ 71%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles5-lengths8] PASSED [ 71%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles5-lengths9] PASSED [ 71%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles5-lengths10] PASSED [ 71%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles5-lengths11] PASSED [ 71%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles5-lengths12] PASSED [ 71%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles5-lengths13] PASSED [ 71%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles5-lengths14] PASSED [ 71%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles5-lengths15] PASSED [ 71%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles5-lengths16] PASSED [ 71%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles5-lengths17] PASSED [ 71%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles5-lengths18] PASSED [ 71%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles5-lengths19] PASSED [ 71%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles6-lengths0] PASSED [ 71%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles6-lengths1] PASSED [ 71%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles6-lengths2] PASSED [ 71%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles6-lengths3] PASSED [ 71%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles6-lengths4] PASSED [ 71%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles6-lengths5] PASSED [ 71%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles6-lengths6] PASSED [ 71%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles6-lengths7] PASSED [ 71%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles6-lengths8] PASSED [ 71%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles6-lengths9] PASSED [ 71%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles6-lengths10] PASSED [ 71%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles6-lengths11] PASSED [ 71%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles6-lengths12] PASSED [ 71%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles6-lengths13] PASSED [ 71%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles6-lengths14] PASSED [ 71%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles6-lengths15] PASSED [ 71%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles6-lengths16] PASSED [ 71%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles6-lengths17] PASSED [ 71%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles6-lengths18] PASSED [ 71%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles6-lengths19] PASSED [ 71%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles7-lengths0] PASSED [ 71%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles7-lengths1] PASSED [ 71%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles7-lengths2] PASSED [ 71%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles7-lengths3] PASSED [ 71%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles7-lengths4] PASSED [ 71%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles7-lengths5] PASSED [ 71%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles7-lengths6] PASSED [ 71%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles7-lengths7] PASSED [ 71%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles7-lengths8] PASSED [ 71%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles7-lengths9] PASSED [ 71%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles7-lengths10] PASSED [ 71%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles7-lengths11] PASSED [ 71%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles7-lengths12] PASSED [ 71%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles7-lengths13] PASSED [ 71%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles7-lengths14] PASSED [ 71%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles7-lengths15] PASSED [ 71%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles7-lengths16] PASSED [ 72%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles7-lengths17] PASSED [ 72%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles7-lengths18] PASSED [ 72%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles7-lengths19] PASSED [ 72%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles8-lengths0] PASSED [ 72%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles8-lengths1] PASSED [ 72%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles8-lengths2] PASSED [ 72%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles8-lengths3] PASSED [ 72%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles8-lengths4] PASSED [ 72%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles8-lengths5] PASSED [ 72%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles8-lengths6] PASSED [ 72%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles8-lengths7] PASSED [ 72%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles8-lengths8] PASSED [ 72%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles8-lengths9] PASSED [ 72%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles8-lengths10] PASSED [ 72%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles8-lengths11] PASSED [ 72%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles8-lengths12] PASSED [ 72%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles8-lengths13] PASSED [ 72%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles8-lengths14] PASSED [ 72%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles8-lengths15] PASSED [ 72%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles8-lengths16] PASSED [ 72%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles8-lengths17] PASSED [ 72%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles8-lengths18] PASSED [ 72%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles8-lengths19] PASSED [ 72%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles9-lengths0] PASSED [ 72%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles9-lengths1] PASSED [ 72%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles9-lengths2] PASSED [ 72%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles9-lengths3] PASSED [ 72%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles9-lengths4] PASSED [ 72%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles9-lengths5] PASSED [ 72%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles9-lengths6] PASSED [ 72%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles9-lengths7] PASSED [ 72%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles9-lengths8] PASSED [ 72%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles9-lengths9] PASSED [ 72%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles9-lengths10] PASSED [ 72%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles9-lengths11] PASSED [ 72%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles9-lengths12] PASSED [ 72%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles9-lengths13] PASSED [ 72%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles9-lengths14] PASSED [ 72%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles9-lengths15] PASSED [ 72%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles9-lengths16] PASSED [ 72%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles9-lengths17] PASSED [ 72%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles9-lengths18] PASSED [ 72%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles9-lengths19] PASSED [ 72%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles10-lengths0] PASSED [ 72%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles10-lengths1] PASSED [ 72%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles10-lengths2] PASSED [ 72%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles10-lengths3] PASSED [ 72%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles10-lengths4] PASSED [ 72%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles10-lengths5] PASSED [ 72%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles10-lengths6] PASSED [ 72%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles10-lengths7] PASSED [ 72%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles10-lengths8] PASSED [ 72%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles10-lengths9] PASSED [ 72%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles10-lengths10] PASSED [ 72%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles10-lengths11] PASSED [ 72%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles10-lengths12] PASSED [ 72%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles10-lengths13] PASSED [ 72%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles10-lengths14] PASSED [ 72%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles10-lengths15] PASSED [ 72%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles10-lengths16] PASSED [ 72%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles10-lengths17] PASSED [ 72%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles10-lengths18] PASSED [ 72%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles10-lengths19] PASSED [ 72%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles11-lengths0] PASSED [ 72%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles11-lengths1] PASSED [ 72%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles11-lengths2] PASSED [ 72%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles11-lengths3] PASSED [ 72%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles11-lengths4] PASSED [ 72%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles11-lengths5] PASSED [ 72%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles11-lengths6] PASSED [ 72%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles11-lengths7] PASSED [ 72%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles11-lengths8] PASSED [ 72%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles11-lengths9] PASSED [ 72%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles11-lengths10] PASSED [ 72%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles11-lengths11] PASSED [ 72%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles11-lengths12] PASSED [ 72%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles11-lengths13] PASSED [ 72%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles11-lengths14] PASSED [ 72%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles11-lengths15] PASSED [ 72%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles11-lengths16] PASSED [ 72%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles11-lengths17] PASSED [ 72%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles11-lengths18] PASSED [ 72%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles11-lengths19] PASSED [ 72%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles12-lengths0] PASSED [ 72%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles12-lengths1] PASSED [ 72%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles12-lengths2] PASSED [ 72%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles12-lengths3] PASSED [ 72%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles12-lengths4] PASSED [ 72%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles12-lengths5] PASSED [ 72%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles12-lengths6] PASSED [ 72%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles12-lengths7] PASSED [ 72%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles12-lengths8] PASSED [ 72%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles12-lengths9] PASSED [ 72%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles12-lengths10] PASSED [ 72%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles12-lengths11] PASSED [ 72%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles12-lengths12] PASSED [ 72%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles12-lengths13] PASSED [ 72%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles12-lengths14] PASSED [ 72%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles12-lengths15] PASSED [ 72%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles12-lengths16] PASSED [ 72%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles12-lengths17] PASSED [ 72%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles12-lengths18] PASSED [ 72%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles12-lengths19] PASSED [ 72%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles13-lengths0] PASSED [ 72%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles13-lengths1] PASSED [ 72%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles13-lengths2] PASSED [ 72%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles13-lengths3] PASSED [ 72%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles13-lengths4] PASSED [ 72%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles13-lengths5] PASSED [ 72%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles13-lengths6] PASSED [ 72%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles13-lengths7] PASSED [ 72%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles13-lengths8] PASSED [ 72%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles13-lengths9] PASSED [ 72%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles13-lengths10] PASSED [ 72%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles13-lengths11] PASSED [ 72%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles13-lengths12] PASSED [ 72%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles13-lengths13] PASSED [ 72%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles13-lengths14] PASSED [ 72%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles13-lengths15] PASSED [ 72%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles13-lengths16] PASSED [ 72%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles13-lengths17] PASSED [ 72%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles13-lengths18] PASSED [ 72%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles13-lengths19] PASSED [ 72%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles14-lengths0] PASSED [ 72%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles14-lengths1] PASSED [ 72%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles14-lengths2] PASSED [ 72%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles14-lengths3] PASSED [ 72%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles14-lengths4] PASSED [ 72%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles14-lengths5] PASSED [ 72%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles14-lengths6] PASSED [ 72%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles14-lengths7] PASSED [ 72%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles14-lengths8] PASSED [ 72%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles14-lengths9] PASSED [ 72%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles14-lengths10] PASSED [ 72%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles14-lengths11] PASSED [ 72%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles14-lengths12] PASSED [ 72%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles14-lengths13] PASSED [ 72%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles14-lengths14] PASSED [ 72%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles14-lengths15] PASSED [ 72%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles14-lengths16] PASSED [ 72%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles14-lengths17] PASSED [ 72%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles14-lengths18] PASSED [ 72%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles14-lengths19] PASSED [ 72%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles15-lengths0] PASSED [ 72%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles15-lengths1] PASSED [ 72%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles15-lengths2] PASSED [ 72%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles15-lengths3] PASSED [ 72%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles15-lengths4] PASSED [ 72%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles15-lengths5] PASSED [ 72%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles15-lengths6] PASSED [ 72%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles15-lengths7] PASSED [ 72%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles15-lengths8] PASSED [ 72%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles15-lengths9] PASSED [ 72%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles15-lengths10] PASSED [ 72%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles15-lengths11] PASSED [ 72%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles15-lengths12] PASSED [ 72%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles15-lengths13] PASSED [ 72%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles15-lengths14] PASSED [ 72%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles15-lengths15] PASSED [ 72%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles15-lengths16] PASSED [ 72%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles15-lengths17] PASSED [ 72%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles15-lengths18] PASSED [ 72%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles15-lengths19] PASSED [ 72%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles16-lengths0] PASSED [ 72%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles16-lengths1] PASSED [ 72%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles16-lengths2] PASSED [ 72%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles16-lengths3] PASSED [ 72%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles16-lengths4] PASSED [ 72%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles16-lengths5] PASSED [ 72%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles16-lengths6] PASSED [ 72%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles16-lengths7] PASSED [ 72%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles16-lengths8] PASSED [ 72%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles16-lengths9] PASSED [ 72%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles16-lengths10] PASSED [ 72%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles16-lengths11] PASSED [ 72%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles16-lengths12] PASSED [ 72%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles16-lengths13] PASSED [ 72%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles16-lengths14] PASSED [ 72%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles16-lengths15] PASSED [ 72%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles16-lengths16] PASSED [ 72%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles16-lengths17] PASSED [ 72%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles16-lengths18] PASSED [ 72%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles16-lengths19] PASSED [ 72%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles17-lengths0] PASSED [ 72%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles17-lengths1] PASSED [ 73%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles17-lengths2] PASSED [ 73%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles17-lengths3] PASSED [ 73%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles17-lengths4] PASSED [ 73%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles17-lengths5] PASSED [ 73%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles17-lengths6] PASSED [ 73%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles17-lengths7] PASSED [ 73%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles17-lengths8] PASSED [ 73%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles17-lengths9] PASSED [ 73%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles17-lengths10] PASSED [ 73%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles17-lengths11] PASSED [ 73%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles17-lengths12] PASSED [ 73%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles17-lengths13] PASSED [ 73%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles17-lengths14] PASSED [ 73%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles17-lengths15] PASSED [ 73%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles17-lengths16] PASSED [ 73%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles17-lengths17] PASSED [ 73%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles17-lengths18] PASSED [ 73%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles17-lengths19] PASSED [ 73%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles18-lengths0] PASSED [ 73%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles18-lengths1] PASSED [ 73%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles18-lengths2] PASSED [ 73%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles18-lengths3] PASSED [ 73%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles18-lengths4] PASSED [ 73%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles18-lengths5] PASSED [ 73%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles18-lengths6] PASSED [ 73%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles18-lengths7] PASSED [ 73%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles18-lengths8] PASSED [ 73%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles18-lengths9] PASSED [ 73%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles18-lengths10] PASSED [ 73%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles18-lengths11] PASSED [ 73%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles18-lengths12] PASSED [ 73%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles18-lengths13] PASSED [ 73%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles18-lengths14] PASSED [ 73%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles18-lengths15] PASSED [ 73%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles18-lengths16] PASSED [ 73%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles18-lengths17] PASSED [ 73%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles18-lengths18] PASSED [ 73%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles18-lengths19] PASSED [ 73%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles19-lengths0] PASSED [ 73%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles19-lengths1] PASSED [ 73%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles19-lengths2] PASSED [ 73%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles19-lengths3] PASSED [ 73%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles19-lengths4] PASSED [ 73%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles19-lengths5] PASSED [ 73%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles19-lengths6] PASSED [ 73%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles19-lengths7] PASSED [ 73%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles19-lengths8] PASSED [ 73%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles19-lengths9] PASSED [ 73%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles19-lengths10] PASSED [ 73%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles19-lengths11] PASSED [ 73%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles19-lengths12] PASSED [ 73%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles19-lengths13] PASSED [ 73%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles19-lengths14] PASSED [ 73%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles19-lengths15] PASSED [ 73%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles19-lengths16] PASSED [ 73%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles19-lengths17] PASSED [ 73%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles19-lengths18] PASSED [ 73%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles19-lengths19] PASSED [ 73%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles20-lengths0] PASSED [ 73%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles20-lengths1] PASSED [ 73%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles20-lengths2] PASSED [ 73%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles20-lengths3] PASSED [ 73%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles20-lengths4] PASSED [ 73%] 625s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles20-lengths5] PASSED [ 73%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles20-lengths6] PASSED [ 73%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles20-lengths7] PASSED [ 73%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles20-lengths8] PASSED [ 73%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles20-lengths9] PASSED [ 73%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles20-lengths10] PASSED [ 73%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles20-lengths11] PASSED [ 73%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles20-lengths12] PASSED [ 73%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles20-lengths13] PASSED [ 73%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles20-lengths14] PASSED [ 73%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles20-lengths15] PASSED [ 73%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles20-lengths16] PASSED [ 73%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles20-lengths17] PASSED [ 73%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles20-lengths18] PASSED [ 73%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles20-lengths19] PASSED [ 73%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles21-lengths0] PASSED [ 73%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles21-lengths1] PASSED [ 73%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles21-lengths2] PASSED [ 73%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles21-lengths3] PASSED [ 73%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles21-lengths4] PASSED [ 73%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles21-lengths5] PASSED [ 73%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles21-lengths6] PASSED [ 73%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles21-lengths7] PASSED [ 73%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles21-lengths8] PASSED [ 73%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles21-lengths9] PASSED [ 73%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles21-lengths10] PASSED [ 73%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles21-lengths11] PASSED [ 73%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles21-lengths12] PASSED [ 73%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles21-lengths13] PASSED [ 73%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles21-lengths14] PASSED [ 73%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles21-lengths15] PASSED [ 73%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles21-lengths16] PASSED [ 73%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles21-lengths17] PASSED [ 73%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles21-lengths18] PASSED [ 73%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles21-lengths19] PASSED [ 73%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles22-lengths0] PASSED [ 73%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles22-lengths1] PASSED [ 73%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles22-lengths2] PASSED [ 73%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles22-lengths3] PASSED [ 73%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles22-lengths4] PASSED [ 73%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles22-lengths5] PASSED [ 73%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles22-lengths6] PASSED [ 73%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles22-lengths7] PASSED [ 73%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles22-lengths8] PASSED [ 73%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles22-lengths9] PASSED [ 73%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles22-lengths10] PASSED [ 73%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles22-lengths11] PASSED [ 73%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles22-lengths12] PASSED [ 73%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles22-lengths13] PASSED [ 73%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles22-lengths14] PASSED [ 73%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles22-lengths15] PASSED [ 73%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles22-lengths16] PASSED [ 73%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles22-lengths17] PASSED [ 73%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles22-lengths18] PASSED [ 73%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles22-lengths19] PASSED [ 73%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles23-lengths0] PASSED [ 73%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles23-lengths1] PASSED [ 73%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles23-lengths2] PASSED [ 73%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles23-lengths3] PASSED [ 73%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles23-lengths4] PASSED [ 73%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles23-lengths5] PASSED [ 73%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles23-lengths6] PASSED [ 73%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles23-lengths7] PASSED [ 73%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles23-lengths8] PASSED [ 73%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles23-lengths9] PASSED [ 73%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles23-lengths10] PASSED [ 73%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles23-lengths11] PASSED [ 73%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles23-lengths12] PASSED [ 73%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles23-lengths13] PASSED [ 73%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles23-lengths14] PASSED [ 73%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles23-lengths15] PASSED [ 73%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles23-lengths16] PASSED [ 73%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles23-lengths17] PASSED [ 73%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles23-lengths18] PASSED [ 73%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles23-lengths19] PASSED [ 73%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles24-lengths0] PASSED [ 73%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles24-lengths1] PASSED [ 73%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles24-lengths2] PASSED [ 73%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles24-lengths3] PASSED [ 73%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles24-lengths4] PASSED [ 73%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles24-lengths5] PASSED [ 73%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles24-lengths6] PASSED [ 73%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles24-lengths7] PASSED [ 73%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles24-lengths8] PASSED [ 73%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles24-lengths9] PASSED [ 73%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles24-lengths10] PASSED [ 73%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles24-lengths11] PASSED [ 73%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles24-lengths12] PASSED [ 73%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles24-lengths13] PASSED [ 73%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles24-lengths14] PASSED [ 73%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles24-lengths15] PASSED [ 73%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles24-lengths16] PASSED [ 73%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles24-lengths17] PASSED [ 73%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles24-lengths18] PASSED [ 73%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles24-lengths19] PASSED [ 73%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles25-lengths0] PASSED [ 73%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles25-lengths1] PASSED [ 73%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles25-lengths2] PASSED [ 73%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles25-lengths3] PASSED [ 73%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles25-lengths4] PASSED [ 73%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles25-lengths5] PASSED [ 73%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles25-lengths6] PASSED [ 73%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles25-lengths7] PASSED [ 73%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles25-lengths8] PASSED [ 73%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles25-lengths9] PASSED [ 73%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles25-lengths10] PASSED [ 73%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles25-lengths11] PASSED [ 73%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles25-lengths12] PASSED [ 73%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles25-lengths13] PASSED [ 73%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles25-lengths14] PASSED [ 73%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles25-lengths15] PASSED [ 73%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles25-lengths16] PASSED [ 73%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles25-lengths17] PASSED [ 73%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles25-lengths18] PASSED [ 73%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles25-lengths19] PASSED [ 73%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles26-lengths0] PASSED [ 73%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles26-lengths1] PASSED [ 73%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles26-lengths2] PASSED [ 73%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles26-lengths3] PASSED [ 73%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles26-lengths4] PASSED [ 73%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles26-lengths5] PASSED [ 74%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles26-lengths6] PASSED [ 74%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles26-lengths7] PASSED [ 74%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles26-lengths8] PASSED [ 74%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles26-lengths9] PASSED [ 74%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles26-lengths10] PASSED [ 74%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles26-lengths11] PASSED [ 74%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles26-lengths12] PASSED [ 74%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles26-lengths13] PASSED [ 74%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles26-lengths14] PASSED [ 74%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles26-lengths15] PASSED [ 74%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles26-lengths16] PASSED [ 74%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles26-lengths17] PASSED [ 74%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles26-lengths18] PASSED [ 74%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles26-lengths19] PASSED [ 74%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles27-lengths0] PASSED [ 74%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles27-lengths1] PASSED [ 74%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles27-lengths2] PASSED [ 74%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles27-lengths3] PASSED [ 74%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles27-lengths4] PASSED [ 74%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles27-lengths5] PASSED [ 74%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles27-lengths6] PASSED [ 74%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles27-lengths7] PASSED [ 74%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles27-lengths8] PASSED [ 74%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles27-lengths9] PASSED [ 74%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles27-lengths10] PASSED [ 74%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles27-lengths11] PASSED [ 74%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles27-lengths12] PASSED [ 74%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles27-lengths13] PASSED [ 74%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles27-lengths14] PASSED [ 74%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles27-lengths15] PASSED [ 74%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles27-lengths16] PASSED [ 74%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles27-lengths17] PASSED [ 74%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles27-lengths18] PASSED [ 74%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles27-lengths19] PASSED [ 74%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles28-lengths0] PASSED [ 74%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles28-lengths1] PASSED [ 74%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles28-lengths2] PASSED [ 74%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles28-lengths3] PASSED [ 74%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles28-lengths4] PASSED [ 74%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles28-lengths5] PASSED [ 74%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles28-lengths6] PASSED [ 74%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles28-lengths7] PASSED [ 74%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles28-lengths8] PASSED [ 74%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles28-lengths9] PASSED [ 74%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles28-lengths10] PASSED [ 74%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles28-lengths11] PASSED [ 74%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles28-lengths12] PASSED [ 74%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles28-lengths13] PASSED [ 74%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles28-lengths14] PASSED [ 74%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles28-lengths15] PASSED [ 74%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles28-lengths16] PASSED [ 74%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles28-lengths17] PASSED [ 74%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles28-lengths18] PASSED [ 74%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles28-lengths19] PASSED [ 74%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles29-lengths0] PASSED [ 74%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles29-lengths1] PASSED [ 74%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles29-lengths2] PASSED [ 74%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles29-lengths3] PASSED [ 74%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles29-lengths4] PASSED [ 74%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles29-lengths5] PASSED [ 74%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles29-lengths6] PASSED [ 74%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles29-lengths7] PASSED [ 74%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles29-lengths8] PASSED [ 74%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles29-lengths9] PASSED [ 74%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles29-lengths10] PASSED [ 74%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles29-lengths11] PASSED [ 74%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles29-lengths12] PASSED [ 74%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles29-lengths13] PASSED [ 74%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles29-lengths14] PASSED [ 74%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles29-lengths15] PASSED [ 74%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles29-lengths16] PASSED [ 74%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles29-lengths17] PASSED [ 74%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles29-lengths18] PASSED [ 74%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles29-lengths19] PASSED [ 74%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles30-lengths0] PASSED [ 74%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles30-lengths1] PASSED [ 74%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles30-lengths2] PASSED [ 74%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles30-lengths3] PASSED [ 74%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles30-lengths4] PASSED [ 74%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles30-lengths5] PASSED [ 74%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles30-lengths6] PASSED [ 74%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles30-lengths7] PASSED [ 74%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles30-lengths8] PASSED [ 74%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles30-lengths9] PASSED [ 74%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles30-lengths10] PASSED [ 74%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles30-lengths11] PASSED [ 74%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles30-lengths12] PASSED [ 74%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles30-lengths13] PASSED [ 74%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles30-lengths14] PASSED [ 74%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles30-lengths15] PASSED [ 74%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles30-lengths16] PASSED [ 74%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles30-lengths17] PASSED [ 74%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles30-lengths18] PASSED [ 74%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles30-lengths19] PASSED [ 74%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles31-lengths0] PASSED [ 74%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles31-lengths1] PASSED [ 74%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles31-lengths2] PASSED [ 74%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles31-lengths3] PASSED [ 74%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles31-lengths4] PASSED [ 74%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles31-lengths5] PASSED [ 74%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles31-lengths6] PASSED [ 74%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles31-lengths7] PASSED [ 74%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles31-lengths8] PASSED [ 74%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles31-lengths9] PASSED [ 74%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles31-lengths10] PASSED [ 74%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles31-lengths11] PASSED [ 74%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles31-lengths12] PASSED [ 74%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles31-lengths13] PASSED [ 74%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles31-lengths14] PASSED [ 74%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles31-lengths15] PASSED [ 74%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles31-lengths16] PASSED [ 74%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles31-lengths17] PASSED [ 74%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles31-lengths18] PASSED [ 74%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles31-lengths19] PASSED [ 74%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles32-lengths0] PASSED [ 74%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles32-lengths1] PASSED [ 74%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles32-lengths2] PASSED [ 74%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles32-lengths3] PASSED [ 74%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles32-lengths4] PASSED [ 74%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles32-lengths5] PASSED [ 74%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles32-lengths6] PASSED [ 74%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles32-lengths7] PASSED [ 74%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles32-lengths8] PASSED [ 74%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles32-lengths9] PASSED [ 74%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles32-lengths10] PASSED [ 74%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles32-lengths11] PASSED [ 74%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles32-lengths12] PASSED [ 74%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles32-lengths13] PASSED [ 74%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles32-lengths14] PASSED [ 74%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles32-lengths15] PASSED [ 74%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles32-lengths16] PASSED [ 74%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles32-lengths17] PASSED [ 74%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles32-lengths18] PASSED [ 74%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles32-lengths19] PASSED [ 74%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles33-lengths0] PASSED [ 74%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles33-lengths1] PASSED [ 74%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles33-lengths2] PASSED [ 74%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles33-lengths3] PASSED [ 74%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles33-lengths4] PASSED [ 74%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles33-lengths5] PASSED [ 74%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles33-lengths6] PASSED [ 74%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles33-lengths7] PASSED [ 74%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles33-lengths8] PASSED [ 74%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles33-lengths9] PASSED [ 74%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles33-lengths10] PASSED [ 74%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles33-lengths11] PASSED [ 74%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles33-lengths12] PASSED [ 74%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles33-lengths13] PASSED [ 74%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles33-lengths14] PASSED [ 74%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles33-lengths15] PASSED [ 74%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles33-lengths16] PASSED [ 74%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles33-lengths17] PASSED [ 74%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles33-lengths18] PASSED [ 74%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles33-lengths19] PASSED [ 74%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles34-lengths0] PASSED [ 74%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles34-lengths1] PASSED [ 74%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles34-lengths2] PASSED [ 74%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles34-lengths3] PASSED [ 74%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles34-lengths4] PASSED [ 74%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles34-lengths5] PASSED [ 74%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles34-lengths6] PASSED [ 74%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles34-lengths7] PASSED [ 74%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles34-lengths8] PASSED [ 74%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles34-lengths9] PASSED [ 74%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles34-lengths10] PASSED [ 74%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles34-lengths11] PASSED [ 74%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles34-lengths12] PASSED [ 74%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles34-lengths13] PASSED [ 74%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles34-lengths14] PASSED [ 74%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles34-lengths15] PASSED [ 74%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles34-lengths16] PASSED [ 74%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles34-lengths17] PASSED [ 74%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles34-lengths18] PASSED [ 74%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles34-lengths19] PASSED [ 74%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles35-lengths0] PASSED [ 74%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles35-lengths1] PASSED [ 74%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles35-lengths2] PASSED [ 74%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles35-lengths3] PASSED [ 74%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles35-lengths4] PASSED [ 74%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles35-lengths5] PASSED [ 74%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles35-lengths6] PASSED [ 74%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles35-lengths7] PASSED [ 74%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles35-lengths8] PASSED [ 74%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles35-lengths9] PASSED [ 75%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles35-lengths10] PASSED [ 75%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles35-lengths11] PASSED [ 75%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles35-lengths12] PASSED [ 75%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles35-lengths13] PASSED [ 75%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles35-lengths14] PASSED [ 75%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles35-lengths15] PASSED [ 75%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles35-lengths16] PASSED [ 75%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles35-lengths17] PASSED [ 75%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles35-lengths18] PASSED [ 75%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles35-lengths19] PASSED [ 75%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles36-lengths0] PASSED [ 75%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles36-lengths1] PASSED [ 75%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles36-lengths2] PASSED [ 75%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles36-lengths3] PASSED [ 75%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles36-lengths4] PASSED [ 75%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles36-lengths5] PASSED [ 75%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles36-lengths6] PASSED [ 75%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles36-lengths7] PASSED [ 75%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles36-lengths8] PASSED [ 75%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles36-lengths9] PASSED [ 75%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles36-lengths10] PASSED [ 75%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles36-lengths11] PASSED [ 75%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles36-lengths12] PASSED [ 75%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles36-lengths13] PASSED [ 75%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles36-lengths14] PASSED [ 75%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles36-lengths15] PASSED [ 75%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles36-lengths16] PASSED [ 75%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles36-lengths17] PASSED [ 75%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles36-lengths18] PASSED [ 75%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles36-lengths19] PASSED [ 75%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles37-lengths0] PASSED [ 75%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles37-lengths1] PASSED [ 75%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles37-lengths2] PASSED [ 75%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles37-lengths3] PASSED [ 75%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles37-lengths4] PASSED [ 75%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles37-lengths5] PASSED [ 75%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles37-lengths6] PASSED [ 75%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles37-lengths7] PASSED [ 75%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles37-lengths8] PASSED [ 75%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles37-lengths9] PASSED [ 75%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles37-lengths10] PASSED [ 75%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles37-lengths11] PASSED [ 75%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles37-lengths12] PASSED [ 75%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles37-lengths13] PASSED [ 75%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles37-lengths14] PASSED [ 75%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles37-lengths15] PASSED [ 75%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles37-lengths16] PASSED [ 75%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles37-lengths17] PASSED [ 75%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles37-lengths18] PASSED [ 75%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles37-lengths19] PASSED [ 75%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles38-lengths0] PASSED [ 75%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles38-lengths1] PASSED [ 75%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles38-lengths2] PASSED [ 75%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles38-lengths3] PASSED [ 75%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles38-lengths4] PASSED [ 75%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles38-lengths5] PASSED [ 75%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles38-lengths6] PASSED [ 75%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles38-lengths7] PASSED [ 75%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles38-lengths8] PASSED [ 75%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles38-lengths9] PASSED [ 75%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles38-lengths10] PASSED [ 75%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles38-lengths11] PASSED [ 75%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles38-lengths12] PASSED [ 75%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles38-lengths13] PASSED [ 75%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles38-lengths14] PASSED [ 75%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles38-lengths15] PASSED [ 75%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles38-lengths16] PASSED [ 75%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles38-lengths17] PASSED [ 75%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles38-lengths18] PASSED [ 75%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles38-lengths19] PASSED [ 75%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles39-lengths0] PASSED [ 75%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles39-lengths1] PASSED [ 75%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles39-lengths2] PASSED [ 75%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles39-lengths3] PASSED [ 75%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles39-lengths4] PASSED [ 75%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles39-lengths5] PASSED [ 75%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles39-lengths6] PASSED [ 75%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles39-lengths7] PASSED [ 75%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles39-lengths8] PASSED [ 75%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles39-lengths9] PASSED [ 75%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles39-lengths10] PASSED [ 75%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles39-lengths11] PASSED [ 75%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles39-lengths12] PASSED [ 75%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles39-lengths13] PASSED [ 75%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles39-lengths14] PASSED [ 75%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles39-lengths15] PASSED [ 75%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles39-lengths16] PASSED [ 75%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles39-lengths17] PASSED [ 75%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles39-lengths18] PASSED [ 75%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles39-lengths19] PASSED [ 75%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles40-lengths0] PASSED [ 75%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles40-lengths1] PASSED [ 75%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles40-lengths2] PASSED [ 75%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles40-lengths3] PASSED [ 75%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles40-lengths4] PASSED [ 75%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles40-lengths5] PASSED [ 75%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles40-lengths6] PASSED [ 75%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles40-lengths7] PASSED [ 75%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles40-lengths8] PASSED [ 75%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles40-lengths9] PASSED [ 75%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles40-lengths10] PASSED [ 75%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles40-lengths11] PASSED [ 75%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles40-lengths12] PASSED [ 75%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles40-lengths13] PASSED [ 75%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles40-lengths14] PASSED [ 75%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles40-lengths15] PASSED [ 75%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles40-lengths16] PASSED [ 75%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles40-lengths17] PASSED [ 75%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles40-lengths18] PASSED [ 75%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles40-lengths19] PASSED [ 75%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles41-lengths0] PASSED [ 75%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles41-lengths1] PASSED [ 75%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles41-lengths2] PASSED [ 75%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles41-lengths3] PASSED [ 75%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles41-lengths4] PASSED [ 75%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles41-lengths5] PASSED [ 75%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles41-lengths6] PASSED [ 75%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles41-lengths7] PASSED [ 75%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles41-lengths8] PASSED [ 75%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles41-lengths9] PASSED [ 75%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles41-lengths10] PASSED [ 75%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles41-lengths11] PASSED [ 75%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles41-lengths12] PASSED [ 75%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles41-lengths13] PASSED [ 75%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles41-lengths14] PASSED [ 75%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles41-lengths15] PASSED [ 75%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles41-lengths16] PASSED [ 75%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles41-lengths17] PASSED [ 75%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles41-lengths18] PASSED [ 75%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles41-lengths19] PASSED [ 75%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles42-lengths0] PASSED [ 75%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles42-lengths1] PASSED [ 75%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles42-lengths2] PASSED [ 75%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles42-lengths3] PASSED [ 75%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles42-lengths4] PASSED [ 75%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles42-lengths5] PASSED [ 75%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles42-lengths6] PASSED [ 75%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles42-lengths7] PASSED [ 75%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles42-lengths8] PASSED [ 75%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles42-lengths9] PASSED [ 75%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles42-lengths10] PASSED [ 75%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles42-lengths11] PASSED [ 75%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles42-lengths12] PASSED [ 75%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles42-lengths13] PASSED [ 75%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles42-lengths14] PASSED [ 75%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles42-lengths15] PASSED [ 75%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles42-lengths16] PASSED [ 75%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles42-lengths17] PASSED [ 75%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles42-lengths18] PASSED [ 75%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles42-lengths19] PASSED [ 75%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles43-lengths0] PASSED [ 75%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles43-lengths1] PASSED [ 75%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles43-lengths2] PASSED [ 75%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles43-lengths3] PASSED [ 75%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles43-lengths4] PASSED [ 75%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles43-lengths5] PASSED [ 75%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles43-lengths6] PASSED [ 75%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles43-lengths7] PASSED [ 75%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles43-lengths8] PASSED [ 75%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles43-lengths9] PASSED [ 75%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles43-lengths10] PASSED [ 75%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles43-lengths11] PASSED [ 75%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles43-lengths12] PASSED [ 75%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles43-lengths13] PASSED [ 75%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles43-lengths14] PASSED [ 75%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles43-lengths15] PASSED [ 75%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles43-lengths16] PASSED [ 75%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles43-lengths17] PASSED [ 75%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles43-lengths18] PASSED [ 75%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles43-lengths19] PASSED [ 75%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles44-lengths0] PASSED [ 75%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles44-lengths1] PASSED [ 75%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles44-lengths2] PASSED [ 75%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles44-lengths3] PASSED [ 75%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles44-lengths4] PASSED [ 75%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles44-lengths5] PASSED [ 75%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles44-lengths6] PASSED [ 75%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles44-lengths7] PASSED [ 75%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles44-lengths8] PASSED [ 75%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles44-lengths9] PASSED [ 75%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles44-lengths10] PASSED [ 75%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles44-lengths11] PASSED [ 75%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles44-lengths12] PASSED [ 75%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles44-lengths13] PASSED [ 76%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles44-lengths14] PASSED [ 76%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles44-lengths15] PASSED [ 76%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles44-lengths16] PASSED [ 76%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles44-lengths17] PASSED [ 76%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles44-lengths18] PASSED [ 76%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles44-lengths19] PASSED [ 76%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles45-lengths0] PASSED [ 76%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles45-lengths1] PASSED [ 76%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles45-lengths2] PASSED [ 76%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles45-lengths3] PASSED [ 76%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles45-lengths4] PASSED [ 76%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles45-lengths5] PASSED [ 76%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles45-lengths6] PASSED [ 76%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles45-lengths7] PASSED [ 76%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles45-lengths8] PASSED [ 76%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles45-lengths9] PASSED [ 76%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles45-lengths10] PASSED [ 76%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles45-lengths11] PASSED [ 76%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles45-lengths12] PASSED [ 76%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles45-lengths13] PASSED [ 76%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles45-lengths14] PASSED [ 76%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles45-lengths15] PASSED [ 76%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles45-lengths16] PASSED [ 76%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles45-lengths17] PASSED [ 76%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles45-lengths18] PASSED [ 76%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles45-lengths19] PASSED [ 76%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles46-lengths0] PASSED [ 76%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles46-lengths1] PASSED [ 76%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles46-lengths2] PASSED [ 76%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles46-lengths3] PASSED [ 76%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles46-lengths4] PASSED [ 76%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles46-lengths5] PASSED [ 76%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles46-lengths6] PASSED [ 76%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles46-lengths7] PASSED [ 76%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles46-lengths8] PASSED [ 76%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles46-lengths9] PASSED [ 76%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles46-lengths10] PASSED [ 76%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles46-lengths11] PASSED [ 76%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles46-lengths12] PASSED [ 76%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles46-lengths13] PASSED [ 76%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles46-lengths14] PASSED [ 76%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles46-lengths15] PASSED [ 76%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles46-lengths16] PASSED [ 76%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles46-lengths17] PASSED [ 76%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles46-lengths18] PASSED [ 76%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles46-lengths19] PASSED [ 76%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles47-lengths0] PASSED [ 76%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles47-lengths1] PASSED [ 76%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles47-lengths2] PASSED [ 76%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles47-lengths3] PASSED [ 76%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles47-lengths4] PASSED [ 76%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles47-lengths5] PASSED [ 76%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles47-lengths6] PASSED [ 76%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles47-lengths7] PASSED [ 76%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles47-lengths8] PASSED [ 76%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles47-lengths9] PASSED [ 76%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles47-lengths10] PASSED [ 76%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles47-lengths11] PASSED [ 76%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles47-lengths12] PASSED [ 76%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles47-lengths13] PASSED [ 76%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles47-lengths14] PASSED [ 76%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles47-lengths15] PASSED [ 76%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles47-lengths16] PASSED [ 76%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles47-lengths17] PASSED [ 76%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles47-lengths18] PASSED [ 76%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles47-lengths19] PASSED [ 76%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles48-lengths0] PASSED [ 76%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles48-lengths1] PASSED [ 76%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles48-lengths2] PASSED [ 76%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles48-lengths3] PASSED [ 76%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles48-lengths4] PASSED [ 76%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles48-lengths5] PASSED [ 76%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles48-lengths6] PASSED [ 76%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles48-lengths7] PASSED [ 76%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles48-lengths8] PASSED [ 76%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles48-lengths9] PASSED [ 76%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles48-lengths10] PASSED [ 76%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles48-lengths11] PASSED [ 76%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles48-lengths12] PASSED [ 76%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles48-lengths13] PASSED [ 76%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles48-lengths14] PASSED [ 76%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles48-lengths15] PASSED [ 76%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles48-lengths16] PASSED [ 76%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles48-lengths17] PASSED [ 76%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles48-lengths18] PASSED [ 76%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles48-lengths19] PASSED [ 76%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles49-lengths0] PASSED [ 76%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles49-lengths1] PASSED [ 76%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles49-lengths2] PASSED [ 76%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles49-lengths3] PASSED [ 76%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles49-lengths4] PASSED [ 76%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles49-lengths5] PASSED [ 76%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles49-lengths6] PASSED [ 76%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles49-lengths7] PASSED [ 76%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles49-lengths8] PASSED [ 76%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles49-lengths9] PASSED [ 76%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles49-lengths10] PASSED [ 76%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles49-lengths11] PASSED [ 76%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles49-lengths12] PASSED [ 76%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles49-lengths13] PASSED [ 76%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles49-lengths14] PASSED [ 76%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles49-lengths15] PASSED [ 76%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles49-lengths16] PASSED [ 76%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles49-lengths17] PASSED [ 76%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles49-lengths18] PASSED [ 76%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles49-lengths19] PASSED [ 76%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles50-lengths0] PASSED [ 76%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles50-lengths1] PASSED [ 76%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles50-lengths2] PASSED [ 76%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles50-lengths3] PASSED [ 76%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles50-lengths4] PASSED [ 76%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles50-lengths5] PASSED [ 76%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles50-lengths6] PASSED [ 76%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles50-lengths7] PASSED [ 76%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles50-lengths8] PASSED [ 76%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles50-lengths9] PASSED [ 76%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles50-lengths10] PASSED [ 76%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles50-lengths11] PASSED [ 76%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles50-lengths12] PASSED [ 76%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles50-lengths13] PASSED [ 76%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles50-lengths14] PASSED [ 76%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles50-lengths15] PASSED [ 76%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles50-lengths16] PASSED [ 76%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles50-lengths17] PASSED [ 76%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles50-lengths18] PASSED [ 76%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles50-lengths19] PASSED [ 76%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles51-lengths0] PASSED [ 76%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles51-lengths1] PASSED [ 76%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles51-lengths2] PASSED [ 76%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles51-lengths3] PASSED [ 76%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles51-lengths4] PASSED [ 76%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles51-lengths5] PASSED [ 76%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles51-lengths6] PASSED [ 76%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles51-lengths7] PASSED [ 76%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles51-lengths8] PASSED [ 76%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles51-lengths9] PASSED [ 76%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles51-lengths10] PASSED [ 76%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles51-lengths11] PASSED [ 76%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles51-lengths12] PASSED [ 76%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles51-lengths13] PASSED [ 76%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles51-lengths14] PASSED [ 76%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles51-lengths15] PASSED [ 76%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles51-lengths16] PASSED [ 76%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles51-lengths17] PASSED [ 76%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles51-lengths18] PASSED [ 76%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles51-lengths19] PASSED [ 76%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles52-lengths0] PASSED [ 76%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles52-lengths1] PASSED [ 76%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles52-lengths2] PASSED [ 76%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles52-lengths3] PASSED [ 76%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles52-lengths4] PASSED [ 76%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles52-lengths5] PASSED [ 76%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles52-lengths6] PASSED [ 76%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles52-lengths7] PASSED [ 76%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles52-lengths8] PASSED [ 76%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles52-lengths9] PASSED [ 76%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles52-lengths10] PASSED [ 76%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles52-lengths11] PASSED [ 76%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles52-lengths12] PASSED [ 76%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles52-lengths13] PASSED [ 76%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles52-lengths14] PASSED [ 76%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles52-lengths15] PASSED [ 76%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles52-lengths16] PASSED [ 76%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles52-lengths17] PASSED [ 76%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles52-lengths18] PASSED [ 76%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles52-lengths19] PASSED [ 76%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles53-lengths0] PASSED [ 76%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles53-lengths1] PASSED [ 76%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles53-lengths2] PASSED [ 76%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles53-lengths3] PASSED [ 76%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles53-lengths4] PASSED [ 76%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles53-lengths5] PASSED [ 76%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles53-lengths6] PASSED [ 76%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles53-lengths7] PASSED [ 76%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles53-lengths8] PASSED [ 76%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles53-lengths9] PASSED [ 76%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles53-lengths10] PASSED [ 76%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles53-lengths11] PASSED [ 76%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles53-lengths12] PASSED [ 76%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles53-lengths13] PASSED [ 76%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles53-lengths14] PASSED [ 76%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles53-lengths15] PASSED [ 76%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles53-lengths16] PASSED [ 76%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles53-lengths17] PASSED [ 76%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles53-lengths18] PASSED [ 77%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles53-lengths19] PASSED [ 77%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles54-lengths0] PASSED [ 77%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles54-lengths1] PASSED [ 77%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles54-lengths2] PASSED [ 77%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles54-lengths3] PASSED [ 77%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles54-lengths4] PASSED [ 77%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles54-lengths5] PASSED [ 77%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles54-lengths6] PASSED [ 77%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles54-lengths7] PASSED [ 77%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles54-lengths8] PASSED [ 77%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles54-lengths9] PASSED [ 77%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles54-lengths10] PASSED [ 77%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles54-lengths11] PASSED [ 77%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles54-lengths12] PASSED [ 77%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles54-lengths13] PASSED [ 77%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles54-lengths14] PASSED [ 77%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles54-lengths15] PASSED [ 77%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles54-lengths16] PASSED [ 77%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles54-lengths17] PASSED [ 77%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles54-lengths18] PASSED [ 77%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles54-lengths19] PASSED [ 77%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles55-lengths0] PASSED [ 77%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles55-lengths1] PASSED [ 77%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles55-lengths2] PASSED [ 77%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles55-lengths3] PASSED [ 77%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles55-lengths4] PASSED [ 77%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles55-lengths5] PASSED [ 77%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles55-lengths6] PASSED [ 77%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles55-lengths7] PASSED [ 77%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles55-lengths8] PASSED [ 77%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles55-lengths9] PASSED [ 77%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles55-lengths10] PASSED [ 77%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles55-lengths11] PASSED [ 77%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles55-lengths12] PASSED [ 77%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles55-lengths13] PASSED [ 77%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles55-lengths14] PASSED [ 77%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles55-lengths15] PASSED [ 77%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles55-lengths16] PASSED [ 77%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles55-lengths17] PASSED [ 77%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles55-lengths18] PASSED [ 77%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles55-lengths19] PASSED [ 77%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles56-lengths0] PASSED [ 77%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles56-lengths1] PASSED [ 77%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles56-lengths2] PASSED [ 77%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles56-lengths3] PASSED [ 77%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles56-lengths4] PASSED [ 77%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles56-lengths5] PASSED [ 77%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles56-lengths6] PASSED [ 77%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles56-lengths7] PASSED [ 77%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles56-lengths8] PASSED [ 77%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles56-lengths9] PASSED [ 77%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles56-lengths10] PASSED [ 77%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles56-lengths11] PASSED [ 77%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles56-lengths12] PASSED [ 77%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles56-lengths13] PASSED [ 77%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles56-lengths14] PASSED [ 77%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles56-lengths15] PASSED [ 77%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles56-lengths16] PASSED [ 77%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles56-lengths17] PASSED [ 77%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles56-lengths18] PASSED [ 77%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles56-lengths19] PASSED [ 77%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles57-lengths0] PASSED [ 77%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles57-lengths1] PASSED [ 77%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles57-lengths2] PASSED [ 77%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles57-lengths3] PASSED [ 77%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles57-lengths4] PASSED [ 77%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles57-lengths5] PASSED [ 77%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles57-lengths6] PASSED [ 77%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles57-lengths7] PASSED [ 77%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles57-lengths8] PASSED [ 77%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles57-lengths9] PASSED [ 77%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles57-lengths10] PASSED [ 77%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles57-lengths11] PASSED [ 77%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles57-lengths12] PASSED [ 77%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles57-lengths13] PASSED [ 77%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles57-lengths14] PASSED [ 77%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles57-lengths15] PASSED [ 77%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles57-lengths16] PASSED [ 77%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles57-lengths17] PASSED [ 77%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles57-lengths18] PASSED [ 77%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles57-lengths19] PASSED [ 77%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles58-lengths0] PASSED [ 77%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles58-lengths1] PASSED [ 77%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles58-lengths2] PASSED [ 77%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles58-lengths3] PASSED [ 77%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles58-lengths4] PASSED [ 77%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles58-lengths5] PASSED [ 77%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles58-lengths6] PASSED [ 77%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles58-lengths7] PASSED [ 77%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles58-lengths8] PASSED [ 77%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles58-lengths9] PASSED [ 77%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles58-lengths10] PASSED [ 77%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles58-lengths11] PASSED [ 77%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles58-lengths12] PASSED [ 77%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles58-lengths13] PASSED [ 77%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles58-lengths14] PASSED [ 77%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles58-lengths15] PASSED [ 77%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles58-lengths16] PASSED [ 77%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles58-lengths17] PASSED [ 77%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles58-lengths18] PASSED [ 77%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles58-lengths19] PASSED [ 77%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles59-lengths0] PASSED [ 77%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles59-lengths1] PASSED [ 77%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles59-lengths2] PASSED [ 77%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles59-lengths3] PASSED [ 77%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles59-lengths4] PASSED [ 77%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles59-lengths5] PASSED [ 77%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles59-lengths6] PASSED [ 77%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles59-lengths7] PASSED [ 77%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles59-lengths8] PASSED [ 77%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles59-lengths9] PASSED [ 77%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles59-lengths10] PASSED [ 77%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles59-lengths11] PASSED [ 77%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles59-lengths12] PASSED [ 77%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles59-lengths13] PASSED [ 77%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles59-lengths14] PASSED [ 77%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles59-lengths15] PASSED [ 77%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles59-lengths16] PASSED [ 77%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles59-lengths17] PASSED [ 77%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles59-lengths18] PASSED [ 77%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles59-lengths19] PASSED [ 77%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles60-lengths0] PASSED [ 77%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles60-lengths1] PASSED [ 77%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles60-lengths2] PASSED [ 77%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles60-lengths3] PASSED [ 77%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles60-lengths4] PASSED [ 77%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles60-lengths5] PASSED [ 77%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles60-lengths6] PASSED [ 77%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles60-lengths7] PASSED [ 77%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles60-lengths8] PASSED [ 77%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles60-lengths9] PASSED [ 77%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles60-lengths10] PASSED [ 77%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles60-lengths11] PASSED [ 77%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles60-lengths12] PASSED [ 77%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles60-lengths13] PASSED [ 77%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles60-lengths14] PASSED [ 77%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles60-lengths15] PASSED [ 77%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles60-lengths16] PASSED [ 77%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles60-lengths17] PASSED [ 77%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles60-lengths18] PASSED [ 77%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles60-lengths19] PASSED [ 77%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles61-lengths0] PASSED [ 77%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles61-lengths1] PASSED [ 77%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles61-lengths2] PASSED [ 77%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles61-lengths3] PASSED [ 77%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles61-lengths4] PASSED [ 77%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles61-lengths5] PASSED [ 77%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles61-lengths6] PASSED [ 77%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles61-lengths7] PASSED [ 77%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles61-lengths8] PASSED [ 77%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles61-lengths9] PASSED [ 77%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles61-lengths10] PASSED [ 77%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles61-lengths11] PASSED [ 77%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles61-lengths12] PASSED [ 77%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles61-lengths13] PASSED [ 77%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles61-lengths14] PASSED [ 77%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles61-lengths15] PASSED [ 77%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles61-lengths16] PASSED [ 77%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles61-lengths17] PASSED [ 77%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles61-lengths18] PASSED [ 77%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles61-lengths19] PASSED [ 77%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles62-lengths0] PASSED [ 77%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles62-lengths1] PASSED [ 77%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles62-lengths2] PASSED [ 77%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles62-lengths3] PASSED [ 77%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles62-lengths4] PASSED [ 77%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles62-lengths5] PASSED [ 77%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles62-lengths6] PASSED [ 77%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles62-lengths7] PASSED [ 77%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles62-lengths8] PASSED [ 77%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles62-lengths9] PASSED [ 77%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles62-lengths10] PASSED [ 77%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles62-lengths11] PASSED [ 77%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles62-lengths12] PASSED [ 77%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles62-lengths13] PASSED [ 77%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles62-lengths14] PASSED [ 77%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles62-lengths15] PASSED [ 77%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles62-lengths16] PASSED [ 77%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles62-lengths17] PASSED [ 77%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles62-lengths18] PASSED [ 77%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles62-lengths19] PASSED [ 77%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles63-lengths0] PASSED [ 77%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles63-lengths1] PASSED [ 77%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles63-lengths2] PASSED [ 78%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles63-lengths3] PASSED [ 78%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles63-lengths4] PASSED [ 78%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles63-lengths5] PASSED [ 78%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles63-lengths6] PASSED [ 78%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles63-lengths7] PASSED [ 78%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles63-lengths8] PASSED [ 78%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles63-lengths9] PASSED [ 78%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles63-lengths10] PASSED [ 78%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles63-lengths11] PASSED [ 78%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles63-lengths12] PASSED [ 78%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles63-lengths13] PASSED [ 78%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles63-lengths14] PASSED [ 78%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles63-lengths15] PASSED [ 78%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles63-lengths16] PASSED [ 78%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles63-lengths17] PASSED [ 78%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles63-lengths18] PASSED [ 78%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles63-lengths19] PASSED [ 78%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles64-lengths0] PASSED [ 78%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles64-lengths1] PASSED [ 78%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles64-lengths2] PASSED [ 78%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles64-lengths3] PASSED [ 78%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles64-lengths4] PASSED [ 78%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles64-lengths5] PASSED [ 78%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles64-lengths6] PASSED [ 78%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles64-lengths7] PASSED [ 78%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles64-lengths8] PASSED [ 78%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles64-lengths9] PASSED [ 78%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles64-lengths10] PASSED [ 78%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles64-lengths11] PASSED [ 78%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles64-lengths12] PASSED [ 78%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles64-lengths13] PASSED [ 78%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles64-lengths14] PASSED [ 78%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles64-lengths15] PASSED [ 78%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles64-lengths16] PASSED [ 78%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles64-lengths17] PASSED [ 78%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles64-lengths18] PASSED [ 78%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles64-lengths19] PASSED [ 78%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles65-lengths0] PASSED [ 78%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles65-lengths1] PASSED [ 78%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles65-lengths2] PASSED [ 78%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles65-lengths3] PASSED [ 78%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles65-lengths4] PASSED [ 78%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles65-lengths5] PASSED [ 78%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles65-lengths6] PASSED [ 78%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles65-lengths7] PASSED [ 78%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles65-lengths8] PASSED [ 78%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles65-lengths9] PASSED [ 78%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles65-lengths10] PASSED [ 78%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles65-lengths11] PASSED [ 78%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles65-lengths12] PASSED [ 78%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles65-lengths13] PASSED [ 78%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles65-lengths14] PASSED [ 78%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles65-lengths15] PASSED [ 78%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles65-lengths16] PASSED [ 78%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles65-lengths17] PASSED [ 78%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles65-lengths18] PASSED [ 78%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles65-lengths19] PASSED [ 78%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles66-lengths0] PASSED [ 78%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles66-lengths1] PASSED [ 78%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles66-lengths2] PASSED [ 78%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles66-lengths3] PASSED [ 78%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles66-lengths4] PASSED [ 78%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles66-lengths5] PASSED [ 78%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles66-lengths6] PASSED [ 78%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles66-lengths7] PASSED [ 78%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles66-lengths8] PASSED [ 78%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles66-lengths9] PASSED [ 78%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles66-lengths10] PASSED [ 78%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles66-lengths11] PASSED [ 78%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles66-lengths12] PASSED [ 78%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles66-lengths13] PASSED [ 78%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles66-lengths14] PASSED [ 78%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles66-lengths15] PASSED [ 78%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles66-lengths16] PASSED [ 78%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles66-lengths17] PASSED [ 78%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles66-lengths18] PASSED [ 78%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles66-lengths19] PASSED [ 78%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles67-lengths0] PASSED [ 78%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles67-lengths1] PASSED [ 78%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles67-lengths2] PASSED [ 78%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles67-lengths3] PASSED [ 78%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles67-lengths4] PASSED [ 78%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles67-lengths5] PASSED [ 78%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles67-lengths6] PASSED [ 78%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles67-lengths7] PASSED [ 78%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles67-lengths8] PASSED [ 78%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles67-lengths9] PASSED [ 78%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles67-lengths10] PASSED [ 78%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles67-lengths11] PASSED [ 78%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles67-lengths12] PASSED [ 78%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles67-lengths13] PASSED [ 78%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles67-lengths14] PASSED [ 78%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles67-lengths15] PASSED [ 78%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles67-lengths16] PASSED [ 78%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles67-lengths17] PASSED [ 78%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles67-lengths18] PASSED [ 78%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles67-lengths19] PASSED [ 78%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles68-lengths0] PASSED [ 78%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles68-lengths1] PASSED [ 78%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles68-lengths2] PASSED [ 78%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles68-lengths3] PASSED [ 78%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles68-lengths4] PASSED [ 78%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles68-lengths5] PASSED [ 78%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles68-lengths6] PASSED [ 78%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles68-lengths7] PASSED [ 78%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles68-lengths8] PASSED [ 78%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles68-lengths9] PASSED [ 78%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles68-lengths10] PASSED [ 78%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles68-lengths11] PASSED [ 78%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles68-lengths12] PASSED [ 78%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles68-lengths13] PASSED [ 78%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles68-lengths14] PASSED [ 78%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles68-lengths15] PASSED [ 78%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles68-lengths16] PASSED [ 78%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles68-lengths17] PASSED [ 78%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles68-lengths18] PASSED [ 78%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles68-lengths19] PASSED [ 78%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles69-lengths0] PASSED [ 78%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles69-lengths1] PASSED [ 78%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles69-lengths2] PASSED [ 78%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles69-lengths3] PASSED [ 78%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles69-lengths4] PASSED [ 78%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles69-lengths5] PASSED [ 78%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles69-lengths6] PASSED [ 78%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles69-lengths7] PASSED [ 78%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles69-lengths8] PASSED [ 78%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles69-lengths9] PASSED [ 78%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles69-lengths10] PASSED [ 78%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles69-lengths11] PASSED [ 78%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles69-lengths12] PASSED [ 78%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles69-lengths13] PASSED [ 78%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles69-lengths14] PASSED [ 78%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles69-lengths15] PASSED [ 78%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles69-lengths16] PASSED [ 78%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles69-lengths17] PASSED [ 78%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles69-lengths18] PASSED [ 78%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles69-lengths19] PASSED [ 78%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles70-lengths0] PASSED [ 78%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles70-lengths1] PASSED [ 78%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles70-lengths2] PASSED [ 78%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles70-lengths3] PASSED [ 78%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles70-lengths4] PASSED [ 78%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles70-lengths5] PASSED [ 78%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles70-lengths6] PASSED [ 78%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles70-lengths7] PASSED [ 78%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles70-lengths8] PASSED [ 78%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles70-lengths9] PASSED [ 78%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles70-lengths10] PASSED [ 78%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles70-lengths11] PASSED [ 78%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles70-lengths12] PASSED [ 78%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles70-lengths13] PASSED [ 78%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles70-lengths14] PASSED [ 78%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles70-lengths15] PASSED [ 78%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles70-lengths16] PASSED [ 78%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles70-lengths17] PASSED [ 78%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles70-lengths18] PASSED [ 78%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles70-lengths19] PASSED [ 78%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles71-lengths0] PASSED [ 78%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles71-lengths1] PASSED [ 78%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles71-lengths2] PASSED [ 78%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles71-lengths3] PASSED [ 78%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles71-lengths4] PASSED [ 78%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles71-lengths5] PASSED [ 78%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles71-lengths6] PASSED [ 78%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles71-lengths7] PASSED [ 78%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles71-lengths8] PASSED [ 78%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles71-lengths9] PASSED [ 78%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles71-lengths10] PASSED [ 78%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles71-lengths11] PASSED [ 78%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles71-lengths12] PASSED [ 78%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles71-lengths13] PASSED [ 78%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles71-lengths14] PASSED [ 78%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles71-lengths15] PASSED [ 78%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles71-lengths16] PASSED [ 78%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles71-lengths17] PASSED [ 78%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles71-lengths18] PASSED [ 78%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles71-lengths19] PASSED [ 78%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles72-lengths0] PASSED [ 78%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles72-lengths1] PASSED [ 78%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles72-lengths2] PASSED [ 78%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles72-lengths3] PASSED [ 78%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles72-lengths4] PASSED [ 78%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles72-lengths5] PASSED [ 78%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles72-lengths6] PASSED [ 79%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles72-lengths7] PASSED [ 79%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles72-lengths8] PASSED [ 79%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles72-lengths9] PASSED [ 79%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles72-lengths10] PASSED [ 79%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles72-lengths11] PASSED [ 79%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles72-lengths12] PASSED [ 79%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles72-lengths13] PASSED [ 79%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles72-lengths14] PASSED [ 79%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles72-lengths15] PASSED [ 79%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles72-lengths16] PASSED [ 79%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles72-lengths17] PASSED [ 79%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles72-lengths18] PASSED [ 79%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles72-lengths19] PASSED [ 79%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles73-lengths0] PASSED [ 79%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles73-lengths1] PASSED [ 79%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles73-lengths2] PASSED [ 79%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles73-lengths3] PASSED [ 79%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles73-lengths4] PASSED [ 79%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles73-lengths5] PASSED [ 79%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles73-lengths6] PASSED [ 79%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles73-lengths7] PASSED [ 79%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles73-lengths8] PASSED [ 79%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles73-lengths9] PASSED [ 79%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles73-lengths10] PASSED [ 79%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles73-lengths11] PASSED [ 79%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles73-lengths12] PASSED [ 79%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles73-lengths13] PASSED [ 79%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles73-lengths14] PASSED [ 79%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles73-lengths15] PASSED [ 79%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles73-lengths16] PASSED [ 79%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles73-lengths17] PASSED [ 79%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles73-lengths18] PASSED [ 79%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles73-lengths19] PASSED [ 79%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles74-lengths0] PASSED [ 79%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles74-lengths1] PASSED [ 79%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles74-lengths2] PASSED [ 79%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles74-lengths3] PASSED [ 79%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles74-lengths4] PASSED [ 79%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles74-lengths5] PASSED [ 79%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles74-lengths6] PASSED [ 79%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles74-lengths7] PASSED [ 79%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles74-lengths8] PASSED [ 79%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles74-lengths9] PASSED [ 79%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles74-lengths10] PASSED [ 79%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles74-lengths11] PASSED [ 79%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles74-lengths12] PASSED [ 79%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles74-lengths13] PASSED [ 79%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles74-lengths14] PASSED [ 79%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles74-lengths15] PASSED [ 79%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles74-lengths16] PASSED [ 79%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles74-lengths17] PASSED [ 79%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles74-lengths18] PASSED [ 79%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles74-lengths19] PASSED [ 79%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles75-lengths0] PASSED [ 79%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles75-lengths1] PASSED [ 79%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles75-lengths2] PASSED [ 79%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles75-lengths3] PASSED [ 79%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles75-lengths4] PASSED [ 79%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles75-lengths5] PASSED [ 79%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles75-lengths6] PASSED [ 79%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles75-lengths7] PASSED [ 79%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles75-lengths8] PASSED [ 79%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles75-lengths9] PASSED [ 79%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles75-lengths10] PASSED [ 79%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles75-lengths11] PASSED [ 79%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles75-lengths12] PASSED [ 79%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles75-lengths13] PASSED [ 79%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles75-lengths14] PASSED [ 79%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles75-lengths15] PASSED [ 79%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles75-lengths16] PASSED [ 79%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles75-lengths17] PASSED [ 79%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles75-lengths18] PASSED [ 79%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles75-lengths19] PASSED [ 79%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles76-lengths0] PASSED [ 79%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles76-lengths1] PASSED [ 79%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles76-lengths2] PASSED [ 79%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles76-lengths3] PASSED [ 79%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles76-lengths4] PASSED [ 79%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles76-lengths5] PASSED [ 79%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles76-lengths6] PASSED [ 79%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles76-lengths7] PASSED [ 79%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles76-lengths8] PASSED [ 79%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles76-lengths9] PASSED [ 79%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles76-lengths10] PASSED [ 79%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles76-lengths11] PASSED [ 79%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles76-lengths12] PASSED [ 79%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles76-lengths13] PASSED [ 79%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles76-lengths14] PASSED [ 79%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles76-lengths15] PASSED [ 79%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles76-lengths16] PASSED [ 79%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles76-lengths17] PASSED [ 79%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles76-lengths18] PASSED [ 79%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles76-lengths19] PASSED [ 79%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles77-lengths0] PASSED [ 79%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles77-lengths1] PASSED [ 79%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles77-lengths2] PASSED [ 79%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles77-lengths3] PASSED [ 79%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles77-lengths4] PASSED [ 79%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles77-lengths5] PASSED [ 79%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles77-lengths6] PASSED [ 79%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles77-lengths7] PASSED [ 79%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles77-lengths8] PASSED [ 79%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles77-lengths9] PASSED [ 79%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles77-lengths10] PASSED [ 79%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles77-lengths11] PASSED [ 79%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles77-lengths12] PASSED [ 79%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles77-lengths13] PASSED [ 79%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles77-lengths14] PASSED [ 79%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles77-lengths15] PASSED [ 79%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles77-lengths16] PASSED [ 79%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles77-lengths17] PASSED [ 79%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles77-lengths18] PASSED [ 79%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles77-lengths19] PASSED [ 79%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles78-lengths0] PASSED [ 79%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles78-lengths1] PASSED [ 79%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles78-lengths2] PASSED [ 79%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles78-lengths3] PASSED [ 79%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles78-lengths4] PASSED [ 79%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles78-lengths5] PASSED [ 79%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles78-lengths6] PASSED [ 79%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles78-lengths7] PASSED [ 79%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles78-lengths8] PASSED [ 79%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles78-lengths9] PASSED [ 79%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles78-lengths10] PASSED [ 79%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles78-lengths11] PASSED [ 79%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles78-lengths12] PASSED [ 79%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles78-lengths13] PASSED [ 79%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles78-lengths14] PASSED [ 79%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles78-lengths15] PASSED [ 79%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles78-lengths16] PASSED [ 79%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles78-lengths17] PASSED [ 79%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles78-lengths18] PASSED [ 79%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles78-lengths19] PASSED [ 79%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles79-lengths0] PASSED [ 79%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles79-lengths1] PASSED [ 79%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles79-lengths2] PASSED [ 79%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles79-lengths3] PASSED [ 79%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles79-lengths4] PASSED [ 79%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles79-lengths5] PASSED [ 79%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles79-lengths6] PASSED [ 79%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles79-lengths7] PASSED [ 79%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles79-lengths8] PASSED [ 79%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles79-lengths9] PASSED [ 79%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles79-lengths10] PASSED [ 79%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles79-lengths11] PASSED [ 79%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles79-lengths12] PASSED [ 79%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles79-lengths13] PASSED [ 79%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles79-lengths14] PASSED [ 79%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles79-lengths15] PASSED [ 79%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles79-lengths16] PASSED [ 79%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles79-lengths17] PASSED [ 79%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles79-lengths18] PASSED [ 79%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles79-lengths19] PASSED [ 79%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles80-lengths0] PASSED [ 79%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles80-lengths1] PASSED [ 79%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles80-lengths2] PASSED [ 79%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles80-lengths3] PASSED [ 79%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles80-lengths4] PASSED [ 79%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles80-lengths5] PASSED [ 79%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles80-lengths6] PASSED [ 79%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles80-lengths7] PASSED [ 79%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles80-lengths8] PASSED [ 79%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles80-lengths9] PASSED [ 79%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles80-lengths10] PASSED [ 79%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles80-lengths11] PASSED [ 79%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles80-lengths12] PASSED [ 79%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles80-lengths13] PASSED [ 79%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles80-lengths14] PASSED [ 79%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles80-lengths15] PASSED [ 79%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles80-lengths16] PASSED [ 79%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles80-lengths17] PASSED [ 79%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles80-lengths18] PASSED [ 79%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles80-lengths19] PASSED [ 79%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles81-lengths0] PASSED [ 79%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles81-lengths1] PASSED [ 79%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles81-lengths2] PASSED [ 79%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles81-lengths3] PASSED [ 79%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles81-lengths4] PASSED [ 79%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles81-lengths5] PASSED [ 79%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles81-lengths6] PASSED [ 79%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles81-lengths7] PASSED [ 79%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles81-lengths8] PASSED [ 79%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles81-lengths9] PASSED [ 79%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles81-lengths10] PASSED [ 80%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles81-lengths11] PASSED [ 80%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles81-lengths12] PASSED [ 80%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles81-lengths13] PASSED [ 80%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles81-lengths14] PASSED [ 80%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles81-lengths15] PASSED [ 80%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles81-lengths16] PASSED [ 80%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles81-lengths17] PASSED [ 80%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles81-lengths18] PASSED [ 80%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles81-lengths19] PASSED [ 80%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles82-lengths0] PASSED [ 80%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles82-lengths1] PASSED [ 80%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles82-lengths2] PASSED [ 80%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles82-lengths3] PASSED [ 80%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles82-lengths4] PASSED [ 80%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles82-lengths5] PASSED [ 80%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles82-lengths6] PASSED [ 80%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles82-lengths7] PASSED [ 80%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles82-lengths8] PASSED [ 80%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles82-lengths9] PASSED [ 80%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles82-lengths10] PASSED [ 80%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles82-lengths11] PASSED [ 80%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles82-lengths12] PASSED [ 80%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles82-lengths13] PASSED [ 80%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles82-lengths14] PASSED [ 80%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles82-lengths15] PASSED [ 80%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles82-lengths16] PASSED [ 80%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles82-lengths17] PASSED [ 80%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles82-lengths18] PASSED [ 80%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles82-lengths19] PASSED [ 80%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles83-lengths0] PASSED [ 80%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles83-lengths1] PASSED [ 80%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles83-lengths2] PASSED [ 80%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles83-lengths3] PASSED [ 80%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles83-lengths4] PASSED [ 80%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles83-lengths5] PASSED [ 80%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles83-lengths6] PASSED [ 80%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles83-lengths7] PASSED [ 80%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles83-lengths8] PASSED [ 80%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles83-lengths9] PASSED [ 80%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles83-lengths10] PASSED [ 80%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles83-lengths11] PASSED [ 80%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles83-lengths12] PASSED [ 80%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles83-lengths13] PASSED [ 80%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles83-lengths14] PASSED [ 80%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles83-lengths15] PASSED [ 80%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles83-lengths16] PASSED [ 80%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles83-lengths17] PASSED [ 80%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles83-lengths18] PASSED [ 80%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles83-lengths19] PASSED [ 80%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_sarrus_det PASSED [ 80%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_sarrus_det_wrong_shape[shape0] PASSED [ 80%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_sarrus_det_wrong_shape[shape1] PASSED [ 80%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_sarrus_det_wrong_shape[shape2] PASSED [ 80%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_sarrus_det_wrong_shape[shape3] PASSED [ 80%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMakeWhole::test_return_value PASSED [ 80%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMakeWhole::test_single_atom_no_bonds PASSED [ 80%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMakeWhole::test_empty_ag PASSED [ 80%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMakeWhole::test_scrambled_ag PASSED [ 80%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMakeWhole::test_out_of_place PASSED [ 80%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMakeWhole::test_double_precision_box PASSED [ 80%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMakeWhole::test_no_bonds PASSED [ 80%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMakeWhole::test_zero_box_size PASSED [ 80%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMakeWhole::test_wrong_reference_atom PASSED [ 80%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMakeWhole::test_impossible_solve PASSED [ 80%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMakeWhole::test_solve_1 PASSED [ 80%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMakeWhole::test_solve_2 PASSED [ 80%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMakeWhole::test_solve_3 PASSED [ 80%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMakeWhole::test_solve_4 PASSED [ 80%] 626s testsuite/MDAnalysisTests/lib/test_util.py::TestMakeWhole::test_double_frag_short_bonds PASSED [ 80%] 627s testsuite/MDAnalysisTests/lib/test_util.py::TestMakeWhole::test_make_whole_triclinic PASSED [ 80%] 627s testsuite/MDAnalysisTests/lib/test_util.py::TestMakeWhole::test_make_whole_fullerene PASSED [ 80%] 627s testsuite/MDAnalysisTests/lib/test_util.py::TestMakeWhole::test_make_whole_multiple_molecules PASSED [ 80%] 627s testsuite/MDAnalysisTests/lib/test_util.py::TestCachedDecorator::test_val1_lookup PASSED [ 80%] 627s testsuite/MDAnalysisTests/lib/test_util.py::TestCachedDecorator::test_val1_inject PASSED [ 80%] 627s testsuite/MDAnalysisTests/lib/test_util.py::TestCachedDecorator::test_val2_lookup PASSED [ 80%] 627s testsuite/MDAnalysisTests/lib/test_util.py::TestCachedDecorator::test_val2_inject PASSED [ 80%] 627s testsuite/MDAnalysisTests/lib/test_util.py::TestCachedDecorator::test_val3_set PASSED [ 80%] 627s testsuite/MDAnalysisTests/lib/test_util.py::TestCachedDecorator::test_val3_del PASSED [ 80%] 627s testsuite/MDAnalysisTests/lib/test_util.py::TestCachedDecorator::test_val4_args PASSED [ 80%] 627s testsuite/MDAnalysisTests/lib/test_util.py::TestCachedDecorator::test_val5_kwargs PASSED [ 80%] 627s testsuite/MDAnalysisTests/lib/test_util.py::TestCachedDecorator::test_val6_universe_validation PASSED [ 80%] 627s testsuite/MDAnalysisTests/lib/test_util.py::TestConvFloat::test_float[0.45-0.45] PASSED [ 80%] 627s testsuite/MDAnalysisTests/lib/test_util.py::TestConvFloat::test_float[.45-0.45] PASSED [ 80%] 627s testsuite/MDAnalysisTests/lib/test_util.py::TestConvFloat::test_float[a.b-a.b] PASSED [ 80%] 627s testsuite/MDAnalysisTests/lib/test_util.py::TestConvFloat::test_map[input0-output0] PASSED [ 80%] 627s testsuite/MDAnalysisTests/lib/test_util.py::TestConvFloat::test_map[input1-output1] PASSED [ 80%] 627s testsuite/MDAnalysisTests/lib/test_util.py::TestFixedwidthBins::test_keys PASSED [ 80%] 627s testsuite/MDAnalysisTests/lib/test_util.py::TestFixedwidthBins::test_ValueError PASSED [ 80%] 627s testsuite/MDAnalysisTests/lib/test_util.py::TestFixedwidthBins::test_usage[0.1-4.0-5.0-10-0.1-4.0-5.0] PASSED [ 80%] 627s testsuite/MDAnalysisTests/lib/test_util.py::TestFixedwidthBins::test_usage[0.4-4.0-5.0-3-0.4-3.9-5.1] PASSED [ 80%] 627s testsuite/MDAnalysisTests/lib/test_util.py::test_check_weights_ok[None-None] PASSED [ 80%] 627s testsuite/MDAnalysisTests/lib/test_util.py::test_check_weights_ok[mass-result1] PASSED [ 80%] 627s testsuite/MDAnalysisTests/lib/test_util.py::test_check_weights_ok[weights2-result2] PASSED [ 80%] 627s testsuite/MDAnalysisTests/lib/test_util.py::test_check_weights_ok[weights3-result3] PASSED [ 80%] 627s testsuite/MDAnalysisTests/lib/test_util.py::test_check_weights_ok[weights4-result4] PASSED [ 80%] 627s testsuite/MDAnalysisTests/lib/test_util.py::test_check_weights_raises_ValueError[42] PASSED [ 80%] 627s testsuite/MDAnalysisTests/lib/test_util.py::test_check_weights_raises_ValueError[geometry] PASSED [ 80%] 627s testsuite/MDAnalysisTests/lib/test_util.py::test_check_weights_raises_ValueError[weights2] PASSED [ 80%] 627s testsuite/MDAnalysisTests/lib/test_util.py::test_check_weights_raises_ValueError[weights3] PASSED [ 80%] 627s testsuite/MDAnalysisTests/lib/test_util.py::test_check_weights_raises_ValueError[weights4] PASSED [ 80%] 627s testsuite/MDAnalysisTests/lib/test_util.py::test_check_weights_raises_ValueError[weights5] PASSED [ 80%] 627s testsuite/MDAnalysisTests/lib/test_util.py::test_check_weights_raises_ValueError[weights6] PASSED [ 80%] 627s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_get_extention[CHAIN] PASSED [ 80%] 627s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_get_extention[CONFIG] PASSED [ 80%] 627s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_get_extention[CRD] PASSED [ 80%] 627s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_get_extention[DATA] PASSED [ 80%] 627s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_get_extention[DCD] PASSED [ 80%] 627s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_get_extention[DMS] PASSED [ 80%] 627s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_get_extention[GMS] PASSED [ 80%] 627s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_get_extention[GRO] PASSED [ 80%] 627s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_get_extention[HISTORY] PASSED [ 80%] 627s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_get_extention[INPCRD] PASSED [ 80%] 627s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_get_extention[LAMMPS] PASSED [ 80%] 627s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_get_extention[MDCRD] PASSED [ 80%] 627s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_get_extention[MMTF] PASSED [ 80%] 627s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_get_extention[MOL2] PASSED [ 80%] 627s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_get_extention[NC] PASSED [ 80%] 627s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_get_extention[NCDF] PASSED [ 80%] 627s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_get_extention[PDB] PASSED [ 80%] 627s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_get_extention[PDBQT] PASSED [ 80%] 627s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_get_extention[PRMTOP] PASSED [ 80%] 627s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_get_extention[PQR] PASSED [ 80%] 627s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_get_extention[PSF] PASSED [ 80%] 627s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_get_extention[RESTRT] PASSED [ 80%] 627s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_get_extention[TOP] PASSED [ 80%] 627s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_get_extention[TPR] PASSED [ 80%] 627s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_get_extention[TRJ] PASSED [ 80%] 627s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_get_extention[TRR] PASSED [ 80%] 627s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_get_extention[XML] PASSED [ 80%] 627s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_get_extention[XPDB] PASSED [ 80%] 627s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_get_extention[XTC] PASSED [ 80%] 627s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_get_extention[XYZ] PASSED [ 80%] 627s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_get_extention[TRZ] PASSED [ 80%] 627s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_get_extention[chain] PASSED [ 80%] 627s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_get_extention[config] PASSED [ 80%] 627s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_get_extention[crd] PASSED [ 80%] 627s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_get_extention[data] PASSED [ 80%] 627s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_get_extention[dcd] PASSED [ 80%] 627s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_get_extention[dms] PASSED [ 80%] 627s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_get_extention[gms] PASSED [ 80%] 627s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_get_extention[gro] PASSED [ 80%] 627s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_get_extention[history] PASSED [ 80%] 627s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_get_extention[inpcrd] PASSED [ 80%] 627s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_get_extention[lammps] PASSED [ 80%] 627s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_get_extention[mdcrd] PASSED [ 80%] 627s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_get_extention[mmtf] PASSED [ 80%] 627s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_get_extention[mol2] PASSED [ 80%] 627s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_get_extention[nc] PASSED [ 80%] 627s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_get_extention[ncdf] PASSED [ 80%] 627s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_get_extention[pdb] PASSED [ 80%] 627s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_get_extention[pdbqt] PASSED [ 80%] 627s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_get_extention[prmtop] PASSED [ 80%] 627s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_get_extention[pqr] PASSED [ 80%] 627s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_get_extention[psf] PASSED [ 80%] 627s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_get_extention[restrt] PASSED [ 80%] 627s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_get_extention[top] PASSED [ 80%] 627s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_get_extention[tpr] PASSED [ 80%] 627s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_get_extention[trj] PASSED [ 80%] 627s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_get_extention[trr] PASSED [ 80%] 627s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_get_extention[xml] PASSED [ 80%] 627s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_get_extention[xpdb] PASSED [ 80%] 627s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_get_extention[xtc] PASSED [ 80%] 627s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_get_extention[xyz] PASSED [ 80%] 627s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_get_extention[trz] PASSED [ 80%] 627s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_compressed_without_compression_extention[CHAIN] PASSED [ 80%] 627s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_compressed_without_compression_extention[CONFIG] PASSED [ 80%] 627s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_compressed_without_compression_extention[CRD] PASSED [ 80%] 627s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_compressed_without_compression_extention[DATA] PASSED [ 80%] 627s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_compressed_without_compression_extention[DCD] PASSED [ 80%] 627s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_compressed_without_compression_extention[DMS] PASSED [ 80%] 627s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_compressed_without_compression_extention[GMS] PASSED [ 80%] 627s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_compressed_without_compression_extention[GRO] PASSED [ 80%] 627s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_compressed_without_compression_extention[HISTORY] PASSED [ 80%] 627s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_compressed_without_compression_extention[INPCRD] PASSED [ 80%] 627s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_compressed_without_compression_extention[LAMMPS] PASSED [ 80%] 627s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_compressed_without_compression_extention[MDCRD] PASSED [ 80%] 627s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_compressed_without_compression_extention[MMTF] PASSED [ 80%] 627s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_compressed_without_compression_extention[MOL2] PASSED [ 80%] 627s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_compressed_without_compression_extention[NC] PASSED [ 80%] 627s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_compressed_without_compression_extention[NCDF] PASSED [ 80%] 627s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_compressed_without_compression_extention[PDB] PASSED [ 80%] 627s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_compressed_without_compression_extention[PDBQT] PASSED [ 80%] 627s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_compressed_without_compression_extention[PRMTOP] PASSED [ 80%] 627s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_compressed_without_compression_extention[PQR] PASSED [ 80%] 627s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_compressed_without_compression_extention[PSF] PASSED [ 81%] 627s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_compressed_without_compression_extention[RESTRT] PASSED [ 81%] 627s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_compressed_without_compression_extention[TOP] PASSED [ 81%] 627s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_compressed_without_compression_extention[TPR] PASSED [ 81%] 627s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_compressed_without_compression_extention[TRJ] PASSED [ 81%] 627s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_compressed_without_compression_extention[TRR] PASSED [ 81%] 627s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_compressed_without_compression_extention[XML] PASSED [ 81%] 627s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_compressed_without_compression_extention[XPDB] PASSED [ 81%] 627s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_compressed_without_compression_extention[XTC] PASSED [ 81%] 627s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_compressed_without_compression_extention[XYZ] PASSED [ 81%] 627s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_compressed_without_compression_extention[TRZ] PASSED [ 81%] 627s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_compressed_without_compression_extention[chain] PASSED [ 81%] 627s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_compressed_without_compression_extention[config] PASSED [ 81%] 627s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_compressed_without_compression_extention[crd] PASSED [ 81%] 627s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_compressed_without_compression_extention[data] PASSED [ 81%] 627s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_compressed_without_compression_extention[dcd] PASSED [ 81%] 627s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_compressed_without_compression_extention[dms] PASSED [ 81%] 627s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_compressed_without_compression_extention[gms] PASSED [ 81%] 627s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_compressed_without_compression_extention[gro] PASSED [ 81%] 627s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_compressed_without_compression_extention[history] PASSED [ 81%] 627s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_compressed_without_compression_extention[inpcrd] PASSED [ 81%] 627s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_compressed_without_compression_extention[lammps] PASSED [ 81%] 627s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_compressed_without_compression_extention[mdcrd] PASSED [ 81%] 627s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_compressed_without_compression_extention[mmtf] PASSED [ 81%] 627s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_compressed_without_compression_extention[mol2] PASSED [ 81%] 627s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_compressed_without_compression_extention[nc] PASSED [ 81%] 627s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_compressed_without_compression_extention[ncdf] PASSED [ 81%] 627s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_compressed_without_compression_extention[pdb] PASSED [ 81%] 627s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_compressed_without_compression_extention[pdbqt] PASSED [ 81%] 627s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_compressed_without_compression_extention[prmtop] PASSED [ 81%] 627s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_compressed_without_compression_extention[pqr] PASSED [ 81%] 627s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_compressed_without_compression_extention[psf] PASSED [ 81%] 627s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_compressed_without_compression_extention[restrt] PASSED [ 81%] 627s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_compressed_without_compression_extention[top] PASSED [ 81%] 627s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_compressed_without_compression_extention[tpr] PASSED [ 81%] 627s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_compressed_without_compression_extention[trj] PASSED [ 81%] 627s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_compressed_without_compression_extention[trr] PASSED [ 81%] 627s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_compressed_without_compression_extention[xml] PASSED [ 81%] 627s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_compressed_without_compression_extention[xpdb] PASSED [ 81%] 627s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_compressed_without_compression_extention[xtc] PASSED [ 81%] 627s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_compressed_without_compression_extention[xyz] PASSED [ 81%] 627s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_compressed_without_compression_extention[trz] PASSED [ 81%] 627s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_compressed[.bz2-CHAIN] PASSED [ 81%] 627s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_compressed[.bz2-CONFIG] PASSED [ 81%] 627s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_compressed[.bz2-CRD] PASSED [ 81%] 627s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_compressed[.bz2-DATA] PASSED [ 81%] 627s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_compressed[.bz2-DCD] PASSED [ 81%] 627s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_compressed[.bz2-DMS] PASSED [ 81%] 627s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_compressed[.bz2-GMS] PASSED [ 81%] 627s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_compressed[.bz2-GRO] PASSED [ 81%] 627s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_compressed[.bz2-HISTORY] PASSED [ 81%] 627s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_compressed[.bz2-INPCRD] PASSED [ 81%] 627s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_compressed[.bz2-LAMMPS] PASSED [ 81%] 627s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_compressed[.bz2-MDCRD] PASSED [ 81%] 627s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_compressed[.bz2-MMTF] PASSED [ 81%] 627s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_compressed[.bz2-MOL2] PASSED [ 81%] 627s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_compressed[.bz2-NC] PASSED [ 81%] 627s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_compressed[.bz2-NCDF] PASSED [ 81%] 627s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_compressed[.bz2-PDB] PASSED [ 81%] 627s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_compressed[.bz2-PDBQT] PASSED [ 81%] 627s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_compressed[.bz2-PRMTOP] PASSED [ 81%] 627s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_compressed[.bz2-PQR] PASSED [ 81%] 627s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_compressed[.bz2-PSF] PASSED [ 81%] 627s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_compressed[.bz2-RESTRT] PASSED [ 81%] 627s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_compressed[.bz2-TOP] PASSED [ 81%] 627s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_compressed[.bz2-TPR] PASSED [ 81%] 627s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_compressed[.bz2-TRJ] PASSED [ 81%] 627s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_compressed[.bz2-TRR] PASSED [ 81%] 627s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_compressed[.bz2-XML] PASSED [ 81%] 627s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_compressed[.bz2-XPDB] PASSED [ 81%] 627s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_compressed[.bz2-XTC] PASSED [ 81%] 627s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_compressed[.bz2-XYZ] PASSED [ 81%] 627s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_compressed[.bz2-TRZ] PASSED [ 81%] 627s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_compressed[.bz2-chain] PASSED [ 81%] 627s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_compressed[.bz2-config] PASSED [ 81%] 627s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_compressed[.bz2-crd] PASSED [ 81%] 627s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_compressed[.bz2-data] PASSED [ 81%] 627s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_compressed[.bz2-dcd] PASSED [ 81%] 627s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_compressed[.bz2-dms] PASSED [ 81%] 627s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_compressed[.bz2-gms] PASSED [ 81%] 627s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_compressed[.bz2-gro] PASSED [ 81%] 627s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_compressed[.bz2-history] PASSED [ 81%] 627s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_compressed[.bz2-inpcrd] PASSED [ 81%] 627s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_compressed[.bz2-lammps] PASSED [ 81%] 627s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_compressed[.bz2-mdcrd] PASSED [ 81%] 627s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_compressed[.bz2-mmtf] PASSED [ 81%] 627s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_compressed[.bz2-mol2] PASSED [ 81%] 627s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_compressed[.bz2-nc] PASSED [ 81%] 627s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_compressed[.bz2-ncdf] PASSED [ 81%] 627s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_compressed[.bz2-pdb] PASSED [ 81%] 627s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_compressed[.bz2-pdbqt] PASSED [ 81%] 627s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_compressed[.bz2-prmtop] PASSED [ 81%] 627s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_compressed[.bz2-pqr] PASSED [ 81%] 627s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_compressed[.bz2-psf] PASSED [ 81%] 627s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_compressed[.bz2-restrt] PASSED [ 81%] 627s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_compressed[.bz2-top] PASSED [ 81%] 627s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_compressed[.bz2-tpr] PASSED [ 81%] 627s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_compressed[.bz2-trj] PASSED [ 81%] 627s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_compressed[.bz2-trr] PASSED [ 81%] 627s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_compressed[.bz2-xml] PASSED [ 81%] 627s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_compressed[.bz2-xpdb] PASSED [ 81%] 627s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_compressed[.bz2-xtc] PASSED [ 81%] 627s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_compressed[.bz2-xyz] PASSED [ 81%] 627s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_compressed[.bz2-trz] PASSED [ 81%] 627s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_compressed[.gz-CHAIN] PASSED [ 81%] 627s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_compressed[.gz-CONFIG] PASSED [ 81%] 627s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_compressed[.gz-CRD] PASSED [ 81%] 627s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_compressed[.gz-DATA] PASSED [ 81%] 627s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_compressed[.gz-DCD] PASSED [ 81%] 627s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_compressed[.gz-DMS] PASSED [ 81%] 627s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_compressed[.gz-GMS] PASSED [ 81%] 627s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_compressed[.gz-GRO] PASSED [ 81%] 627s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_compressed[.gz-HISTORY] PASSED [ 81%] 627s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_compressed[.gz-INPCRD] PASSED [ 81%] 627s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_compressed[.gz-LAMMPS] PASSED [ 81%] 627s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_compressed[.gz-MDCRD] PASSED [ 81%] 627s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_compressed[.gz-MMTF] PASSED [ 81%] 627s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_compressed[.gz-MOL2] PASSED [ 81%] 627s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_compressed[.gz-NC] PASSED [ 81%] 627s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_compressed[.gz-NCDF] PASSED [ 81%] 627s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_compressed[.gz-PDB] PASSED [ 81%] 627s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_compressed[.gz-PDBQT] PASSED [ 81%] 627s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_compressed[.gz-PRMTOP] PASSED [ 81%] 627s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_compressed[.gz-PQR] PASSED [ 81%] 627s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_compressed[.gz-PSF] PASSED [ 81%] 627s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_compressed[.gz-RESTRT] PASSED [ 81%] 627s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_compressed[.gz-TOP] PASSED [ 81%] 627s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_compressed[.gz-TPR] PASSED [ 81%] 627s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_compressed[.gz-TRJ] PASSED [ 81%] 627s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_compressed[.gz-TRR] PASSED [ 81%] 627s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_compressed[.gz-XML] PASSED [ 81%] 627s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_compressed[.gz-XPDB] PASSED [ 81%] 627s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_compressed[.gz-XTC] PASSED [ 81%] 627s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_compressed[.gz-XYZ] PASSED [ 81%] 627s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_compressed[.gz-TRZ] PASSED [ 81%] 627s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_compressed[.gz-chain] PASSED [ 81%] 627s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_compressed[.gz-config] PASSED [ 81%] 627s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_compressed[.gz-crd] PASSED [ 81%] 627s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_compressed[.gz-data] PASSED [ 81%] 627s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_compressed[.gz-dcd] PASSED [ 81%] 627s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_compressed[.gz-dms] PASSED [ 81%] 627s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_compressed[.gz-gms] PASSED [ 81%] 627s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_compressed[.gz-gro] PASSED [ 81%] 627s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_compressed[.gz-history] PASSED [ 81%] 627s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_compressed[.gz-inpcrd] PASSED [ 81%] 627s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_compressed[.gz-lammps] PASSED [ 81%] 627s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_compressed[.gz-mdcrd] PASSED [ 81%] 627s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_compressed[.gz-mmtf] PASSED [ 81%] 627s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_compressed[.gz-mol2] PASSED [ 81%] 627s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_compressed[.gz-nc] PASSED [ 81%] 627s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_compressed[.gz-ncdf] PASSED [ 81%] 627s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_compressed[.gz-pdb] PASSED [ 81%] 627s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_compressed[.gz-pdbqt] PASSED [ 81%] 627s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_compressed[.gz-prmtop] PASSED [ 81%] 627s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_compressed[.gz-pqr] PASSED [ 81%] 627s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_compressed[.gz-psf] PASSED [ 81%] 627s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_compressed[.gz-restrt] PASSED [ 81%] 627s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_compressed[.gz-top] PASSED [ 81%] 627s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_compressed[.gz-tpr] PASSED [ 81%] 627s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_compressed[.gz-trj] PASSED [ 81%] 627s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_compressed[.gz-trr] PASSED [ 81%] 627s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_compressed[.gz-xml] PASSED [ 81%] 627s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_compressed[.gz-xpdb] PASSED [ 81%] 627s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_compressed[.gz-xtc] PASSED [ 81%] 627s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_compressed[.gz-xyz] PASSED [ 81%] 627s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_compressed[.gz-trz] PASSED [ 81%] 627s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_guess_format[CHAIN] PASSED [ 81%] 627s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_guess_format[CONFIG] PASSED [ 81%] 627s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_guess_format[CRD] PASSED [ 81%] 627s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_guess_format[DATA] PASSED [ 81%] 627s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_guess_format[DCD] PASSED [ 81%] 627s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_guess_format[DMS] PASSED [ 81%] 627s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_guess_format[GMS] PASSED [ 81%] 627s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_guess_format[GRO] PASSED [ 81%] 627s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_guess_format[HISTORY] PASSED [ 81%] 627s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_guess_format[INPCRD] PASSED [ 81%] 627s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_guess_format[LAMMPS] PASSED [ 81%] 627s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_guess_format[MDCRD] PASSED [ 81%] 627s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_guess_format[MMTF] PASSED [ 81%] 627s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_guess_format[MOL2] PASSED [ 81%] 627s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_guess_format[NC] PASSED [ 81%] 627s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_guess_format[NCDF] PASSED [ 81%] 627s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_guess_format[PDB] PASSED [ 81%] 627s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_guess_format[PDBQT] PASSED [ 81%] 627s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_guess_format[PRMTOP] PASSED [ 82%] 627s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_guess_format[PQR] PASSED [ 82%] 627s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_guess_format[PSF] PASSED [ 82%] 627s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_guess_format[RESTRT] PASSED [ 82%] 627s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_guess_format[TOP] PASSED [ 82%] 627s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_guess_format[TPR] PASSED [ 82%] 627s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_guess_format[TRJ] PASSED [ 82%] 627s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_guess_format[TRR] PASSED [ 82%] 627s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_guess_format[XML] PASSED [ 82%] 627s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_guess_format[XPDB] PASSED [ 82%] 627s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_guess_format[XTC] PASSED [ 82%] 627s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_guess_format[XYZ] PASSED [ 82%] 627s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_guess_format[TRZ] PASSED [ 82%] 627s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_guess_format[chain] PASSED [ 82%] 627s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_guess_format[config] PASSED [ 82%] 627s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_guess_format[crd] PASSED [ 82%] 627s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_guess_format[data] PASSED [ 82%] 627s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_guess_format[dcd] PASSED [ 82%] 627s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_guess_format[dms] PASSED [ 82%] 627s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_guess_format[gms] PASSED [ 82%] 627s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_guess_format[gro] PASSED [ 82%] 627s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_guess_format[history] PASSED [ 82%] 627s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_guess_format[inpcrd] PASSED [ 82%] 627s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_guess_format[lammps] PASSED [ 82%] 627s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_guess_format[mdcrd] PASSED [ 82%] 627s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_guess_format[mmtf] PASSED [ 82%] 627s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_guess_format[mol2] PASSED [ 82%] 627s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_guess_format[nc] PASSED [ 82%] 627s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_guess_format[ncdf] PASSED [ 82%] 627s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_guess_format[pdb] PASSED [ 82%] 627s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_guess_format[pdbqt] PASSED [ 82%] 627s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_guess_format[prmtop] PASSED [ 82%] 627s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_guess_format[pqr] PASSED [ 82%] 627s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_guess_format[psf] PASSED [ 82%] 627s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_guess_format[restrt] PASSED [ 82%] 627s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_guess_format[top] PASSED [ 82%] 627s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_guess_format[tpr] PASSED [ 82%] 627s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_guess_format[trj] PASSED [ 82%] 627s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_guess_format[trr] PASSED [ 82%] 627s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_guess_format[xml] PASSED [ 82%] 627s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_guess_format[xpdb] PASSED [ 82%] 627s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_guess_format[xtc] PASSED [ 82%] 627s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_guess_format[xyz] PASSED [ 82%] 627s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_guess_format[trz] PASSED [ 82%] 627s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_guess_format_compressed[.bz2-CHAIN] PASSED [ 82%] 627s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_guess_format_compressed[.bz2-CONFIG] PASSED [ 82%] 627s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_guess_format_compressed[.bz2-CRD] PASSED [ 82%] 627s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_guess_format_compressed[.bz2-DATA] PASSED [ 82%] 627s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_guess_format_compressed[.bz2-DCD] PASSED [ 82%] 627s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_guess_format_compressed[.bz2-DMS] PASSED [ 82%] 627s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_guess_format_compressed[.bz2-GMS] PASSED [ 82%] 627s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_guess_format_compressed[.bz2-GRO] PASSED [ 82%] 627s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_guess_format_compressed[.bz2-HISTORY] PASSED [ 82%] 627s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_guess_format_compressed[.bz2-INPCRD] PASSED [ 82%] 627s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_guess_format_compressed[.bz2-LAMMPS] PASSED [ 82%] 627s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_guess_format_compressed[.bz2-MDCRD] PASSED [ 82%] 627s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_guess_format_compressed[.bz2-MMTF] PASSED [ 82%] 627s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_guess_format_compressed[.bz2-MOL2] PASSED [ 82%] 627s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_guess_format_compressed[.bz2-NC] PASSED [ 82%] 627s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_guess_format_compressed[.bz2-NCDF] PASSED [ 82%] 627s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_guess_format_compressed[.bz2-PDB] PASSED [ 82%] 627s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_guess_format_compressed[.bz2-PDBQT] PASSED [ 82%] 627s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_guess_format_compressed[.bz2-PRMTOP] PASSED [ 82%] 627s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_guess_format_compressed[.bz2-PQR] PASSED [ 82%] 627s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_guess_format_compressed[.bz2-PSF] PASSED [ 82%] 627s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_guess_format_compressed[.bz2-RESTRT] PASSED [ 82%] 627s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_guess_format_compressed[.bz2-TOP] PASSED [ 82%] 627s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_guess_format_compressed[.bz2-TPR] PASSED [ 82%] 627s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_guess_format_compressed[.bz2-TRJ] PASSED [ 82%] 627s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_guess_format_compressed[.bz2-TRR] PASSED [ 82%] 627s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_guess_format_compressed[.bz2-XML] PASSED [ 82%] 627s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_guess_format_compressed[.bz2-XPDB] PASSED [ 82%] 627s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_guess_format_compressed[.bz2-XTC] PASSED [ 82%] 627s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_guess_format_compressed[.bz2-XYZ] PASSED [ 82%] 627s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_guess_format_compressed[.bz2-TRZ] PASSED [ 82%] 627s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_guess_format_compressed[.bz2-chain] PASSED [ 82%] 627s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_guess_format_compressed[.bz2-config] PASSED [ 82%] 627s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_guess_format_compressed[.bz2-crd] PASSED [ 82%] 627s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_guess_format_compressed[.bz2-data] PASSED [ 82%] 627s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_guess_format_compressed[.bz2-dcd] PASSED [ 82%] 627s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_guess_format_compressed[.bz2-dms] PASSED [ 82%] 627s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_guess_format_compressed[.bz2-gms] PASSED [ 82%] 627s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_guess_format_compressed[.bz2-gro] PASSED [ 82%] 627s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_guess_format_compressed[.bz2-history] PASSED [ 82%] 627s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_guess_format_compressed[.bz2-inpcrd] PASSED [ 82%] 627s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_guess_format_compressed[.bz2-lammps] PASSED [ 82%] 627s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_guess_format_compressed[.bz2-mdcrd] PASSED [ 82%] 627s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_guess_format_compressed[.bz2-mmtf] PASSED [ 82%] 627s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_guess_format_compressed[.bz2-mol2] PASSED [ 82%] 627s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_guess_format_compressed[.bz2-nc] PASSED [ 82%] 627s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_guess_format_compressed[.bz2-ncdf] PASSED [ 82%] 627s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_guess_format_compressed[.bz2-pdb] PASSED [ 82%] 627s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_guess_format_compressed[.bz2-pdbqt] PASSED [ 82%] 627s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_guess_format_compressed[.bz2-prmtop] PASSED [ 82%] 627s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_guess_format_compressed[.bz2-pqr] PASSED [ 82%] 627s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_guess_format_compressed[.bz2-psf] PASSED [ 82%] 627s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_guess_format_compressed[.bz2-restrt] PASSED [ 82%] 627s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_guess_format_compressed[.bz2-top] PASSED [ 82%] 627s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_guess_format_compressed[.bz2-tpr] PASSED [ 82%] 627s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_guess_format_compressed[.bz2-trj] PASSED [ 82%] 627s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_guess_format_compressed[.bz2-trr] PASSED [ 82%] 627s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_guess_format_compressed[.bz2-xml] PASSED [ 82%] 627s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_guess_format_compressed[.bz2-xpdb] PASSED [ 82%] 627s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_guess_format_compressed[.bz2-xtc] PASSED [ 82%] 627s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_guess_format_compressed[.bz2-xyz] PASSED [ 82%] 627s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_guess_format_compressed[.bz2-trz] PASSED [ 82%] 627s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_guess_format_compressed[.gz-CHAIN] PASSED [ 82%] 627s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_guess_format_compressed[.gz-CONFIG] PASSED [ 82%] 627s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_guess_format_compressed[.gz-CRD] PASSED [ 82%] 627s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_guess_format_compressed[.gz-DATA] PASSED [ 82%] 627s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_guess_format_compressed[.gz-DCD] PASSED [ 82%] 627s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_guess_format_compressed[.gz-DMS] PASSED [ 82%] 627s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_guess_format_compressed[.gz-GMS] PASSED [ 82%] 627s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_guess_format_compressed[.gz-GRO] PASSED [ 82%] 627s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_guess_format_compressed[.gz-HISTORY] PASSED [ 82%] 627s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_guess_format_compressed[.gz-INPCRD] PASSED [ 82%] 627s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_guess_format_compressed[.gz-LAMMPS] PASSED [ 82%] 627s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_guess_format_compressed[.gz-MDCRD] PASSED [ 82%] 627s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_guess_format_compressed[.gz-MMTF] PASSED [ 82%] 627s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_guess_format_compressed[.gz-MOL2] PASSED [ 82%] 627s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_guess_format_compressed[.gz-NC] PASSED [ 82%] 627s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_guess_format_compressed[.gz-NCDF] PASSED [ 82%] 627s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_guess_format_compressed[.gz-PDB] PASSED [ 82%] 627s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_guess_format_compressed[.gz-PDBQT] PASSED [ 82%] 627s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_guess_format_compressed[.gz-PRMTOP] PASSED [ 82%] 627s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_guess_format_compressed[.gz-PQR] PASSED [ 82%] 627s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_guess_format_compressed[.gz-PSF] PASSED [ 82%] 627s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_guess_format_compressed[.gz-RESTRT] PASSED [ 82%] 627s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_guess_format_compressed[.gz-TOP] PASSED [ 82%] 627s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_guess_format_compressed[.gz-TPR] PASSED [ 82%] 627s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_guess_format_compressed[.gz-TRJ] PASSED [ 82%] 627s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_guess_format_compressed[.gz-TRR] PASSED [ 82%] 627s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_guess_format_compressed[.gz-XML] PASSED [ 82%] 627s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_guess_format_compressed[.gz-XPDB] PASSED [ 82%] 627s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_guess_format_compressed[.gz-XTC] PASSED [ 82%] 627s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_guess_format_compressed[.gz-XYZ] PASSED [ 82%] 627s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_guess_format_compressed[.gz-TRZ] PASSED [ 82%] 627s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_guess_format_compressed[.gz-chain] PASSED [ 82%] 627s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_guess_format_compressed[.gz-config] PASSED [ 82%] 627s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_guess_format_compressed[.gz-crd] PASSED [ 82%] 627s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_guess_format_compressed[.gz-data] PASSED [ 82%] 627s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_guess_format_compressed[.gz-dcd] PASSED [ 82%] 627s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_guess_format_compressed[.gz-dms] PASSED [ 82%] 627s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_guess_format_compressed[.gz-gms] PASSED [ 82%] 627s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_guess_format_compressed[.gz-gro] PASSED [ 82%] 627s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_guess_format_compressed[.gz-history] PASSED [ 82%] 627s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_guess_format_compressed[.gz-inpcrd] PASSED [ 82%] 627s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_guess_format_compressed[.gz-lammps] PASSED [ 82%] 627s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_guess_format_compressed[.gz-mdcrd] PASSED [ 82%] 627s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_guess_format_compressed[.gz-mmtf] PASSED [ 82%] 627s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_guess_format_compressed[.gz-mol2] PASSED [ 82%] 627s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_guess_format_compressed[.gz-nc] PASSED [ 82%] 627s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_guess_format_compressed[.gz-ncdf] PASSED [ 82%] 627s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_guess_format_compressed[.gz-pdb] PASSED [ 82%] 627s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_guess_format_compressed[.gz-pdbqt] PASSED [ 82%] 627s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_guess_format_compressed[.gz-prmtop] PASSED [ 82%] 627s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_guess_format_compressed[.gz-pqr] PASSED [ 82%] 627s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_guess_format_compressed[.gz-psf] PASSED [ 82%] 627s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_guess_format_compressed[.gz-restrt] PASSED [ 82%] 627s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_guess_format_compressed[.gz-top] PASSED [ 82%] 627s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_guess_format_compressed[.gz-tpr] PASSED [ 82%] 627s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_guess_format_compressed[.gz-trj] PASSED [ 82%] 627s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_guess_format_compressed[.gz-trr] PASSED [ 82%] 627s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_guess_format_compressed[.gz-xml] PASSED [ 82%] 627s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_guess_format_compressed[.gz-xpdb] PASSED [ 82%] 627s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_guess_format_compressed[.gz-xtc] PASSED [ 82%] 627s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_guess_format_compressed[.gz-xyz] PASSED [ 82%] 627s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_guess_format_compressed[.gz-trz] PASSED [ 82%] 627s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_get_parser[CHAIN-MinimalParser] PASSED [ 82%] 627s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_get_parser[CONFIG-ConfigParser] PASSED [ 82%] 627s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_get_parser[CRD-CRDParser] PASSED [ 82%] 627s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_get_parser[DATA-DATAParser] PASSED [ 82%] 627s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_get_parser[DCD-MinimalParser] PASSED [ 82%] 627s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_get_parser[DMS-DMSParser] PASSED [ 82%] 627s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_get_parser[GMS-GMSParser] PASSED [ 82%] 627s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_get_parser[GRO-GROParser] PASSED [ 82%] 627s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_get_parser[HISTORY-HistoryParser] PASSED [ 82%] 627s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_get_parser[INPCRD-MinimalParser] PASSED [ 82%] 627s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_get_parser[LAMMPS-MinimalParser] PASSED [ 82%] 627s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_get_parser[MDCRD-MinimalParser] PASSED [ 82%] 627s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_get_parser[MMTF-MMTFParser] PASSED [ 82%] 627s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_get_parser[MOL2-MOL2Parser] PASSED [ 82%] 627s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_get_parser[NC-MinimalParser] PASSED [ 82%] 627s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_get_parser[NCDF-MinimalParser] PASSED [ 82%] 627s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_get_parser[PDB-PDBParser] PASSED [ 83%] 627s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_get_parser[PDBQT-PDBQTParser] PASSED [ 83%] 627s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_get_parser[PRMTOP-TOPParser] PASSED [ 83%] 627s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_get_parser[PQR-PQRParser] PASSED [ 83%] 627s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_get_parser[PSF-PSFParser] PASSED [ 83%] 627s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_get_parser[RESTRT-MinimalParser] PASSED [ 83%] 627s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_get_parser[TOP-TOPParser] PASSED [ 83%] 627s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_get_parser[TPR-TPRParser] PASSED [ 83%] 627s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_get_parser[TRJ-MinimalParser] PASSED [ 83%] 627s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_get_parser[TRR-MinimalParser] PASSED [ 83%] 627s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_get_parser[XML-HoomdXMLParser] PASSED [ 83%] 627s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_get_parser[XPDB-ExtendedPDBParser] PASSED [ 83%] 627s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_get_parser[XTC-MinimalParser] PASSED [ 83%] 627s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_get_parser[XYZ-XYZParser] PASSED [ 83%] 627s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_get_parser[TRZ-MinimalParser] PASSED [ 83%] 627s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_get_parser_compressed[.bz2-CHAIN-MinimalParser] PASSED [ 83%] 627s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_get_parser_compressed[.bz2-CONFIG-ConfigParser] PASSED [ 83%] 627s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_get_parser_compressed[.bz2-CRD-CRDParser] PASSED [ 83%] 627s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_get_parser_compressed[.bz2-DATA-DATAParser] PASSED [ 83%] 627s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_get_parser_compressed[.bz2-DCD-MinimalParser] PASSED [ 83%] 627s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_get_parser_compressed[.bz2-DMS-DMSParser] PASSED [ 83%] 627s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_get_parser_compressed[.bz2-GMS-GMSParser] PASSED [ 83%] 627s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_get_parser_compressed[.bz2-GRO-GROParser] PASSED [ 83%] 627s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_get_parser_compressed[.bz2-HISTORY-HistoryParser] PASSED [ 83%] 628s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_get_parser_compressed[.bz2-INPCRD-MinimalParser] PASSED [ 83%] 628s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_get_parser_compressed[.bz2-LAMMPS-MinimalParser] PASSED [ 83%] 628s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_get_parser_compressed[.bz2-MDCRD-MinimalParser] PASSED [ 83%] 628s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_get_parser_compressed[.bz2-MMTF-MMTFParser] PASSED [ 83%] 628s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_get_parser_compressed[.bz2-MOL2-MOL2Parser] PASSED [ 83%] 628s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_get_parser_compressed[.bz2-NC-MinimalParser] PASSED [ 83%] 628s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_get_parser_compressed[.bz2-NCDF-MinimalParser] PASSED [ 83%] 628s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_get_parser_compressed[.bz2-PDB-PDBParser] PASSED [ 83%] 628s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_get_parser_compressed[.bz2-PDBQT-PDBQTParser] PASSED [ 83%] 628s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_get_parser_compressed[.bz2-PRMTOP-TOPParser] PASSED [ 83%] 628s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_get_parser_compressed[.bz2-PQR-PQRParser] PASSED [ 83%] 628s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_get_parser_compressed[.bz2-PSF-PSFParser] PASSED [ 83%] 628s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_get_parser_compressed[.bz2-RESTRT-MinimalParser] PASSED [ 83%] 628s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_get_parser_compressed[.bz2-TOP-TOPParser] PASSED [ 83%] 628s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_get_parser_compressed[.bz2-TPR-TPRParser] PASSED [ 83%] 628s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_get_parser_compressed[.bz2-TRJ-MinimalParser] PASSED [ 83%] 628s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_get_parser_compressed[.bz2-TRR-MinimalParser] PASSED [ 83%] 628s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_get_parser_compressed[.bz2-XML-HoomdXMLParser] PASSED [ 83%] 628s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_get_parser_compressed[.bz2-XPDB-ExtendedPDBParser] PASSED [ 83%] 628s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_get_parser_compressed[.bz2-XTC-MinimalParser] PASSED [ 83%] 628s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_get_parser_compressed[.bz2-XYZ-XYZParser] PASSED [ 83%] 628s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_get_parser_compressed[.bz2-TRZ-MinimalParser] PASSED [ 83%] 628s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_get_parser_compressed[.gz-CHAIN-MinimalParser] PASSED [ 83%] 628s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_get_parser_compressed[.gz-CONFIG-ConfigParser] PASSED [ 83%] 628s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_get_parser_compressed[.gz-CRD-CRDParser] PASSED [ 83%] 628s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_get_parser_compressed[.gz-DATA-DATAParser] PASSED [ 83%] 628s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_get_parser_compressed[.gz-DCD-MinimalParser] PASSED [ 83%] 628s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_get_parser_compressed[.gz-DMS-DMSParser] PASSED [ 83%] 628s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_get_parser_compressed[.gz-GMS-GMSParser] PASSED [ 83%] 628s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_get_parser_compressed[.gz-GRO-GROParser] PASSED [ 83%] 628s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_get_parser_compressed[.gz-HISTORY-HistoryParser] PASSED [ 83%] 628s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_get_parser_compressed[.gz-INPCRD-MinimalParser] PASSED [ 83%] 628s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_get_parser_compressed[.gz-LAMMPS-MinimalParser] PASSED [ 83%] 628s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_get_parser_compressed[.gz-MDCRD-MinimalParser] PASSED [ 83%] 628s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_get_parser_compressed[.gz-MMTF-MMTFParser] PASSED [ 83%] 628s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_get_parser_compressed[.gz-MOL2-MOL2Parser] PASSED [ 83%] 628s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_get_parser_compressed[.gz-NC-MinimalParser] PASSED [ 83%] 628s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_get_parser_compressed[.gz-NCDF-MinimalParser] PASSED [ 83%] 628s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_get_parser_compressed[.gz-PDB-PDBParser] PASSED [ 83%] 628s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_get_parser_compressed[.gz-PDBQT-PDBQTParser] PASSED [ 83%] 628s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_get_parser_compressed[.gz-PRMTOP-TOPParser] PASSED [ 83%] 628s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_get_parser_compressed[.gz-PQR-PQRParser] PASSED [ 83%] 628s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_get_parser_compressed[.gz-PSF-PSFParser] PASSED [ 83%] 628s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_get_parser_compressed[.gz-RESTRT-MinimalParser] PASSED [ 83%] 628s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_get_parser_compressed[.gz-TOP-TOPParser] PASSED [ 83%] 628s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_get_parser_compressed[.gz-TPR-TPRParser] PASSED [ 83%] 628s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_get_parser_compressed[.gz-TRJ-MinimalParser] PASSED [ 83%] 628s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_get_parser_compressed[.gz-TRR-MinimalParser] PASSED [ 83%] 628s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_get_parser_compressed[.gz-XML-HoomdXMLParser] PASSED [ 83%] 628s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_get_parser_compressed[.gz-XPDB-ExtendedPDBParser] PASSED [ 83%] 628s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_get_parser_compressed[.gz-XTC-MinimalParser] PASSED [ 83%] 628s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_get_parser_compressed[.gz-XYZ-XYZParser] PASSED [ 83%] 628s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_get_parser_compressed[.gz-TRZ-MinimalParser] PASSED [ 83%] 628s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_get_parser_invalid[extention0] SKIPPED [ 83%] 628s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_get_reader[CHAIN-ChainReader] PASSED [ 83%] 628s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_get_reader[CONFIG-ConfigReader] PASSED [ 83%] 628s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_get_reader[CRD-CRDReader] PASSED [ 83%] 628s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_get_reader[DATA-DATAReader] PASSED [ 83%] 628s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_get_reader[DCD-DCDReader] PASSED [ 83%] 628s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_get_reader[DMS-DMSReader] PASSED [ 83%] 628s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_get_reader[GMS-GMSReader] PASSED [ 83%] 628s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_get_reader[GRO-GROReader] PASSED [ 83%] 628s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_get_reader[HISTORY-HistoryReader] PASSED [ 83%] 628s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_get_reader[INPCRD-INPReader] PASSED [ 83%] 628s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_get_reader[LAMMPS-DCDReader] PASSED [ 83%] 628s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_get_reader[MDCRD-TRJReader] PASSED [ 83%] 628s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_get_reader[MMTF-MMTFReader] PASSED [ 83%] 628s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_get_reader[MOL2-MOL2Reader] PASSED [ 83%] 628s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_get_reader[NC-NCDFReader] PASSED [ 83%] 628s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_get_reader[NCDF-NCDFReader] PASSED [ 83%] 628s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_get_reader[PDB-PDBReader] PASSED [ 83%] 628s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_get_reader[PDBQT-PDBQTReader] PASSED [ 83%] 628s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_get_reader[PQR-PQRReader] PASSED [ 83%] 628s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_get_reader[RESTRT-INPReader] PASSED [ 83%] 628s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_get_reader[TRJ-TRJReader] PASSED [ 83%] 628s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_get_reader[TRR-TRRReader] PASSED [ 83%] 628s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_get_reader[XPDB-ExtendedPDBReader] PASSED [ 83%] 628s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_get_reader[XTC-XTCReader] PASSED [ 83%] 628s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_get_reader[XYZ-XYZReader] PASSED [ 83%] 628s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_get_reader[TRZ-TRZReader] PASSED [ 83%] 628s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_get_reader_compressed[.bz2-CHAIN-ChainReader] PASSED [ 83%] 628s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_get_reader_compressed[.bz2-CONFIG-ConfigReader] PASSED [ 83%] 628s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_get_reader_compressed[.bz2-CRD-CRDReader] PASSED [ 83%] 628s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_get_reader_compressed[.bz2-DATA-DATAReader] PASSED [ 83%] 628s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_get_reader_compressed[.bz2-DCD-DCDReader] PASSED [ 83%] 628s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_get_reader_compressed[.bz2-DMS-DMSReader] PASSED [ 83%] 628s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_get_reader_compressed[.bz2-GMS-GMSReader] PASSED [ 83%] 628s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_get_reader_compressed[.bz2-GRO-GROReader] PASSED [ 83%] 628s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_get_reader_compressed[.bz2-HISTORY-HistoryReader] PASSED [ 83%] 628s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_get_reader_compressed[.bz2-INPCRD-INPReader] PASSED [ 83%] 628s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_get_reader_compressed[.bz2-LAMMPS-DCDReader] PASSED [ 83%] 628s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_get_reader_compressed[.bz2-MDCRD-TRJReader] PASSED [ 83%] 628s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_get_reader_compressed[.bz2-MMTF-MMTFReader] PASSED [ 83%] 628s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_get_reader_compressed[.bz2-MOL2-MOL2Reader] PASSED [ 83%] 628s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_get_reader_compressed[.bz2-NC-NCDFReader] PASSED [ 83%] 628s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_get_reader_compressed[.bz2-NCDF-NCDFReader] PASSED [ 83%] 628s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_get_reader_compressed[.bz2-PDB-PDBReader] PASSED [ 83%] 628s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_get_reader_compressed[.bz2-PDBQT-PDBQTReader] PASSED [ 83%] 628s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_get_reader_compressed[.bz2-PQR-PQRReader] PASSED [ 83%] 628s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_get_reader_compressed[.bz2-RESTRT-INPReader] PASSED [ 83%] 628s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_get_reader_compressed[.bz2-TRJ-TRJReader] PASSED [ 83%] 628s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_get_reader_compressed[.bz2-TRR-TRRReader] PASSED [ 83%] 628s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_get_reader_compressed[.bz2-XPDB-ExtendedPDBReader] PASSED [ 83%] 628s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_get_reader_compressed[.bz2-XTC-XTCReader] PASSED [ 83%] 628s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_get_reader_compressed[.bz2-XYZ-XYZReader] PASSED [ 83%] 628s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_get_reader_compressed[.bz2-TRZ-TRZReader] PASSED [ 83%] 628s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_get_reader_compressed[.gz-CHAIN-ChainReader] PASSED [ 83%] 628s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_get_reader_compressed[.gz-CONFIG-ConfigReader] PASSED [ 83%] 628s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_get_reader_compressed[.gz-CRD-CRDReader] PASSED [ 83%] 628s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_get_reader_compressed[.gz-DATA-DATAReader] PASSED [ 83%] 628s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_get_reader_compressed[.gz-DCD-DCDReader] PASSED [ 83%] 628s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_get_reader_compressed[.gz-DMS-DMSReader] PASSED [ 83%] 628s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_get_reader_compressed[.gz-GMS-GMSReader] PASSED [ 83%] 628s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_get_reader_compressed[.gz-GRO-GROReader] PASSED [ 83%] 628s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_get_reader_compressed[.gz-HISTORY-HistoryReader] PASSED [ 83%] 628s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_get_reader_compressed[.gz-INPCRD-INPReader] PASSED [ 83%] 628s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_get_reader_compressed[.gz-LAMMPS-DCDReader] PASSED [ 83%] 628s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_get_reader_compressed[.gz-MDCRD-TRJReader] PASSED [ 83%] 628s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_get_reader_compressed[.gz-MMTF-MMTFReader] PASSED [ 83%] 628s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_get_reader_compressed[.gz-MOL2-MOL2Reader] PASSED [ 83%] 628s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_get_reader_compressed[.gz-NC-NCDFReader] PASSED [ 83%] 628s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_get_reader_compressed[.gz-NCDF-NCDFReader] PASSED [ 83%] 628s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_get_reader_compressed[.gz-PDB-PDBReader] PASSED [ 83%] 628s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_get_reader_compressed[.gz-PDBQT-PDBQTReader] PASSED [ 83%] 628s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_get_reader_compressed[.gz-PQR-PQRReader] PASSED [ 83%] 628s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_get_reader_compressed[.gz-RESTRT-INPReader] PASSED [ 83%] 628s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_get_reader_compressed[.gz-TRJ-TRJReader] PASSED [ 83%] 628s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_get_reader_compressed[.gz-TRR-TRRReader] PASSED [ 83%] 628s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_get_reader_compressed[.gz-XPDB-ExtendedPDBReader] PASSED [ 83%] 628s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_get_reader_compressed[.gz-XTC-XTCReader] PASSED [ 83%] 628s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_get_reader_compressed[.gz-XYZ-XYZReader] PASSED [ 83%] 628s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_get_reader_compressed[.gz-TRZ-TRZReader] PASSED [ 83%] 628s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_get_reader_invalid[extention0] PASSED [ 83%] 628s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_get_reader_invalid[extention1] PASSED [ 83%] 628s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_get_reader_invalid[extention2] PASSED [ 83%] 628s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_get_reader_invalid[extention3] PASSED [ 83%] 628s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_get_reader_invalid[extention4] PASSED [ 83%] 628s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_check_compressed_format_TypeError PASSED [ 83%] 628s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_format_from_filename_TypeError PASSED [ 83%] 628s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_guess_format_stream_ValueError PASSED [ 83%] 628s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_from_ndarray PASSED [ 83%] 628s testsuite/MDAnalysisTests/lib/test_util.py::TestUniqueRows::test_unique_rows_2 PASSED [ 83%] 628s testsuite/MDAnalysisTests/lib/test_util.py::TestUniqueRows::test_unique_rows_3 PASSED [ 83%] 628s testsuite/MDAnalysisTests/lib/test_util.py::TestUniqueRows::test_unique_rows_with_view PASSED [ 83%] 628s testsuite/MDAnalysisTests/lib/test_util.py::TestGetWriterFor::test_no_filename_argument PASSED [ 83%] 628s testsuite/MDAnalysisTests/lib/test_util.py::TestGetWriterFor::test_precedence PASSED [ 83%] 628s testsuite/MDAnalysisTests/lib/test_util.py::TestGetWriterFor::test_missing_extension PASSED [ 83%] 628s testsuite/MDAnalysisTests/lib/test_util.py::TestGetWriterFor::test_extension_empty_string PASSED [ 83%] 628s testsuite/MDAnalysisTests/lib/test_util.py::TestGetWriterFor::test_file_no_extension PASSED [ 83%] 628s testsuite/MDAnalysisTests/lib/test_util.py::TestGetWriterFor::test_wrong_format PASSED [ 83%] 628s testsuite/MDAnalysisTests/lib/test_util.py::TestGetWriterFor::test_compressed_extension PASSED [ 83%] 628s testsuite/MDAnalysisTests/lib/test_util.py::TestGetWriterFor::test_compressed_extension_fail PASSED [ 83%] 628s testsuite/MDAnalysisTests/lib/test_util.py::TestGetWriterFor::test_non_string_filename PASSED [ 83%] 628s testsuite/MDAnalysisTests/lib/test_util.py::TestGetWriterFor::test_multiframe_failure PASSED [ 83%] 628s testsuite/MDAnalysisTests/lib/test_util.py::TestGetWriterFor::test_multiframe_nonsense PASSED [ 83%] 628s testsuite/MDAnalysisTests/lib/test_util.py::TestGetWriterFor::test_singleframe[CRD-CRDWriter] PASSED [ 83%] 628s testsuite/MDAnalysisTests/lib/test_util.py::TestGetWriterFor::test_singleframe[DATA-DATAWriter] PASSED [ 83%] 628s testsuite/MDAnalysisTests/lib/test_util.py::TestGetWriterFor::test_singleframe[DCD-DCDWriter] PASSED [ 83%] 628s testsuite/MDAnalysisTests/lib/test_util.py::TestGetWriterFor::test_singleframe[GRO-GROWriter] PASSED [ 83%] 628s testsuite/MDAnalysisTests/lib/test_util.py::TestGetWriterFor::test_singleframe[LAMMPS-DCDWriter] PASSED [ 83%] 628s testsuite/MDAnalysisTests/lib/test_util.py::TestGetWriterFor::test_singleframe[MOL2-MOL2Writer] PASSED [ 84%] 628s testsuite/MDAnalysisTests/lib/test_util.py::TestGetWriterFor::test_singleframe[NCDF-NCDFWriter] PASSED [ 84%] 628s testsuite/MDAnalysisTests/lib/test_util.py::TestGetWriterFor::test_singleframe[NULL-NullWriter] PASSED [ 84%] 628s testsuite/MDAnalysisTests/lib/test_util.py::TestGetWriterFor::test_singleframe[PDBQT-PDBQTWriter] PASSED [ 84%] 628s testsuite/MDAnalysisTests/lib/test_util.py::TestGetWriterFor::test_singleframe[PQR-PQRWriter] PASSED [ 84%] 628s testsuite/MDAnalysisTests/lib/test_util.py::TestGetWriterFor::test_singleframe[TRR-TRRWriter] PASSED [ 84%] 628s testsuite/MDAnalysisTests/lib/test_util.py::TestGetWriterFor::test_singleframe[XTC-XTCWriter] PASSED [ 84%] 628s testsuite/MDAnalysisTests/lib/test_util.py::TestGetWriterFor::test_singleframe[XYZ-XYZWriter] PASSED [ 84%] 628s testsuite/MDAnalysisTests/lib/test_util.py::TestGetWriterFor::test_singleframe[TRZ-TRZWriter] PASSED [ 84%] 628s testsuite/MDAnalysisTests/lib/test_util.py::TestGetWriterFor::test_singleframe_fails[format0] SKIPPED [ 84%] 628s testsuite/MDAnalysisTests/lib/test_util.py::TestGetWriterFor::test_multiframe[DCD-DCDWriter] PASSED [ 84%] 628s testsuite/MDAnalysisTests/lib/test_util.py::TestGetWriterFor::test_multiframe[LAMMPS-DCDWriter] PASSED [ 84%] 628s testsuite/MDAnalysisTests/lib/test_util.py::TestGetWriterFor::test_multiframe[MOL2-MOL2Writer] PASSED [ 84%] 628s testsuite/MDAnalysisTests/lib/test_util.py::TestGetWriterFor::test_multiframe[NCDF-NCDFWriter] PASSED [ 84%] 628s testsuite/MDAnalysisTests/lib/test_util.py::TestGetWriterFor::test_multiframe[NULL-NullWriter] PASSED [ 84%] 628s testsuite/MDAnalysisTests/lib/test_util.py::TestGetWriterFor::test_multiframe[TRR-TRRWriter] PASSED [ 84%] 628s testsuite/MDAnalysisTests/lib/test_util.py::TestGetWriterFor::test_multiframe[XTC-XTCWriter] PASSED [ 84%] 628s testsuite/MDAnalysisTests/lib/test_util.py::TestGetWriterFor::test_multiframe[XYZ-XYZWriter] PASSED [ 84%] 628s testsuite/MDAnalysisTests/lib/test_util.py::TestGetWriterFor::test_multiframe[TRZ-TRZWriter] PASSED [ 84%] 628s testsuite/MDAnalysisTests/lib/test_util.py::TestGetWriterFor::test_multiframe_fails[CRD] PASSED [ 84%] 628s testsuite/MDAnalysisTests/lib/test_util.py::TestGetWriterFor::test_multiframe_fails[DATA] PASSED [ 84%] 628s testsuite/MDAnalysisTests/lib/test_util.py::TestGetWriterFor::test_multiframe_fails[GRO] PASSED [ 84%] 628s testsuite/MDAnalysisTests/lib/test_util.py::TestGetWriterFor::test_multiframe_fails[PDBQT] PASSED [ 84%] 628s testsuite/MDAnalysisTests/lib/test_util.py::TestGetWriterFor::test_multiframe_fails[PQR] PASSED [ 84%] 628s testsuite/MDAnalysisTests/lib/test_util.py::TestGetWriterFor::test_get_writer_for_pdb PASSED [ 84%] 628s testsuite/MDAnalysisTests/lib/test_util.py::TestBlocksOf::test_blocks_of_1 PASSED [ 84%] 628s testsuite/MDAnalysisTests/lib/test_util.py::TestBlocksOf::test_blocks_of_2 PASSED [ 84%] 628s testsuite/MDAnalysisTests/lib/test_util.py::TestBlocksOf::test_blocks_of_3 PASSED [ 84%] 628s testsuite/MDAnalysisTests/lib/test_util.py::TestBlocksOf::test_blocks_of_4 PASSED [ 84%] 628s testsuite/MDAnalysisTests/lib/test_util.py::TestBlocksOf::test_blocks_of_ValueError PASSED [ 84%] 628s testsuite/MDAnalysisTests/lib/test_util.py::test_group_same_or_consecutive_integers[arr0-answer0] PASSED [ 84%] 628s testsuite/MDAnalysisTests/lib/test_util.py::test_group_same_or_consecutive_integers[arr1-answer1] PASSED [ 84%] 628s testsuite/MDAnalysisTests/lib/test_util.py::test_group_same_or_consecutive_integers[arr2-answer2] PASSED [ 84%] 628s testsuite/MDAnalysisTests/lib/test_util.py::TestNamespace::test_getitem PASSED [ 84%] 628s testsuite/MDAnalysisTests/lib/test_util.py::TestNamespace::test_getitem_KeyError PASSED [ 84%] 628s testsuite/MDAnalysisTests/lib/test_util.py::TestNamespace::test_setitem PASSED [ 84%] 628s testsuite/MDAnalysisTests/lib/test_util.py::TestNamespace::test_delitem PASSED [ 84%] 628s testsuite/MDAnalysisTests/lib/test_util.py::TestNamespace::test_delitem_AttributeError PASSED [ 84%] 628s testsuite/MDAnalysisTests/lib/test_util.py::TestNamespace::test_setattr PASSED [ 84%] 628s testsuite/MDAnalysisTests/lib/test_util.py::TestNamespace::test_getattr PASSED [ 84%] 628s testsuite/MDAnalysisTests/lib/test_util.py::TestNamespace::test_getattr_AttributeError PASSED [ 84%] 628s testsuite/MDAnalysisTests/lib/test_util.py::TestNamespace::test_delattr PASSED [ 84%] 628s testsuite/MDAnalysisTests/lib/test_util.py::TestNamespace::test_eq PASSED [ 84%] 628s testsuite/MDAnalysisTests/lib/test_util.py::TestNamespace::test_len PASSED [ 84%] 628s testsuite/MDAnalysisTests/lib/test_util.py::TestTruncateInteger::test_ltruncate_int[a0-4] PASSED [ 84%] 628s testsuite/MDAnalysisTests/lib/test_util.py::TestTruncateInteger::test_ltruncate_int[a1-34] PASSED [ 84%] 628s testsuite/MDAnalysisTests/lib/test_util.py::TestTruncateInteger::test_ltruncate_int[a2-234] PASSED [ 84%] 628s testsuite/MDAnalysisTests/lib/test_util.py::TestTruncateInteger::test_ltruncate_int[a3-1234] PASSED [ 84%] 628s testsuite/MDAnalysisTests/lib/test_util.py::TestTruncateInteger::test_ltruncate_int[a4-1234] PASSED [ 84%] 628s testsuite/MDAnalysisTests/lib/test_util.py::TestFlattenDict::test_flatten_dict PASSED [ 84%] 628s testsuite/MDAnalysisTests/lib/test_util.py::TestStaticVariables::test_static_variables PASSED [ 84%] 628s testsuite/MDAnalysisTests/lib/test_util.py::TestWarnIfNotUnique::test_warn_if_not_unique PASSED [ 84%] 628s testsuite/MDAnalysisTests/lib/test_util.py::TestWarnIfNotUnique::test_warn_if_not_unique_once_outer PASSED [ 84%] 628s testsuite/MDAnalysisTests/lib/test_util.py::TestWarnIfNotUnique::test_warned_state_restored_on_failure PASSED [ 84%] 628s testsuite/MDAnalysisTests/lib/test_util.py::TestWarnIfNotUnique::test_warn_if_not_unique_once_inner PASSED [ 84%] 628s testsuite/MDAnalysisTests/lib/test_util.py::TestWarnIfNotUnique::test_warn_if_not_unique_multiple_references PASSED [ 84%] 628s testsuite/MDAnalysisTests/lib/test_util.py::TestWarnIfNotUnique::test_warn_if_not_unique_unnamed PASSED [ 84%] 628s testsuite/MDAnalysisTests/lib/test_util.py::TestWarnIfNotUnique::test_warn_if_not_unique_fails_for_non_groupmethods PASSED [ 84%] 628s testsuite/MDAnalysisTests/lib/test_util.py::TestWarnIfNotUnique::test_filter_duplicate_with_userwarning PASSED [ 84%] 628s testsuite/MDAnalysisTests/lib/test_util.py::TestCheckCoords::test_default_options PASSED [ 84%] 628s testsuite/MDAnalysisTests/lib/test_util.py::TestCheckCoords::test_atomgroup[True-True-True-True-True-True] PASSED [ 84%] 628s testsuite/MDAnalysisTests/lib/test_util.py::TestCheckCoords::test_atomgroup[True-True-True-True-True-False] PASSED [ 84%] 628s testsuite/MDAnalysisTests/lib/test_util.py::TestCheckCoords::test_atomgroup[True-True-True-True-False-True] PASSED [ 84%] 628s testsuite/MDAnalysisTests/lib/test_util.py::TestCheckCoords::test_atomgroup[True-True-True-True-False-False] PASSED [ 84%] 628s testsuite/MDAnalysisTests/lib/test_util.py::TestCheckCoords::test_atomgroup[True-True-True-False-True-True] PASSED [ 84%] 628s testsuite/MDAnalysisTests/lib/test_util.py::TestCheckCoords::test_atomgroup[True-True-True-False-True-False] PASSED [ 84%] 628s testsuite/MDAnalysisTests/lib/test_util.py::TestCheckCoords::test_atomgroup[True-True-True-False-False-True] PASSED [ 84%] 628s testsuite/MDAnalysisTests/lib/test_util.py::TestCheckCoords::test_atomgroup[True-True-True-False-False-False] PASSED [ 84%] 628s testsuite/MDAnalysisTests/lib/test_util.py::TestCheckCoords::test_atomgroup[True-True-False-True-True-True] PASSED [ 84%] 628s testsuite/MDAnalysisTests/lib/test_util.py::TestCheckCoords::test_atomgroup[True-True-False-True-True-False] PASSED [ 84%] 628s testsuite/MDAnalysisTests/lib/test_util.py::TestCheckCoords::test_atomgroup[True-True-False-True-False-True] PASSED [ 84%] 629s testsuite/MDAnalysisTests/lib/test_util.py::TestCheckCoords::test_atomgroup[True-True-False-True-False-False] PASSED [ 84%] 629s testsuite/MDAnalysisTests/lib/test_util.py::TestCheckCoords::test_atomgroup[True-True-False-False-True-True] PASSED [ 84%] 629s testsuite/MDAnalysisTests/lib/test_util.py::TestCheckCoords::test_atomgroup[True-True-False-False-True-False] PASSED [ 84%] 629s testsuite/MDAnalysisTests/lib/test_util.py::TestCheckCoords::test_atomgroup[True-True-False-False-False-True] PASSED [ 84%] 629s testsuite/MDAnalysisTests/lib/test_util.py::TestCheckCoords::test_atomgroup[True-True-False-False-False-False] PASSED [ 84%] 629s testsuite/MDAnalysisTests/lib/test_util.py::TestCheckCoords::test_atomgroup[True-False-True-True-True-True] PASSED [ 84%] 629s testsuite/MDAnalysisTests/lib/test_util.py::TestCheckCoords::test_atomgroup[True-False-True-True-True-False] PASSED [ 84%] 629s testsuite/MDAnalysisTests/lib/test_util.py::TestCheckCoords::test_atomgroup[True-False-True-True-False-True] PASSED [ 84%] 629s testsuite/MDAnalysisTests/lib/test_util.py::TestCheckCoords::test_atomgroup[True-False-True-True-False-False] PASSED [ 84%] 629s testsuite/MDAnalysisTests/lib/test_util.py::TestCheckCoords::test_atomgroup[True-False-True-False-True-True] PASSED [ 84%] 629s testsuite/MDAnalysisTests/lib/test_util.py::TestCheckCoords::test_atomgroup[True-False-True-False-True-False] PASSED [ 84%] 629s testsuite/MDAnalysisTests/lib/test_util.py::TestCheckCoords::test_atomgroup[True-False-True-False-False-True] PASSED [ 84%] 629s testsuite/MDAnalysisTests/lib/test_util.py::TestCheckCoords::test_atomgroup[True-False-True-False-False-False] PASSED [ 84%] 629s testsuite/MDAnalysisTests/lib/test_util.py::TestCheckCoords::test_atomgroup[True-False-False-True-True-True] PASSED [ 84%] 630s testsuite/MDAnalysisTests/lib/test_util.py::TestCheckCoords::test_atomgroup[True-False-False-True-True-False] PASSED [ 84%] 630s testsuite/MDAnalysisTests/lib/test_util.py::TestCheckCoords::test_atomgroup[True-False-False-True-False-True] PASSED [ 84%] 630s testsuite/MDAnalysisTests/lib/test_util.py::TestCheckCoords::test_atomgroup[True-False-False-True-False-False] PASSED [ 84%] 630s testsuite/MDAnalysisTests/lib/test_util.py::TestCheckCoords::test_atomgroup[True-False-False-False-True-True] PASSED [ 84%] 630s testsuite/MDAnalysisTests/lib/test_util.py::TestCheckCoords::test_atomgroup[True-False-False-False-True-False] PASSED [ 84%] 630s testsuite/MDAnalysisTests/lib/test_util.py::TestCheckCoords::test_atomgroup[True-False-False-False-False-True] PASSED [ 84%] 630s testsuite/MDAnalysisTests/lib/test_util.py::TestCheckCoords::test_atomgroup[True-False-False-False-False-False] PASSED [ 84%] 630s testsuite/MDAnalysisTests/lib/test_util.py::TestCheckCoords::test_atomgroup[False-True-True-True-True-True] PASSED [ 84%] 630s testsuite/MDAnalysisTests/lib/test_util.py::TestCheckCoords::test_atomgroup[False-True-True-True-True-False] PASSED [ 84%] 630s testsuite/MDAnalysisTests/lib/test_util.py::TestCheckCoords::test_atomgroup[False-True-True-True-False-True] PASSED [ 84%] 630s testsuite/MDAnalysisTests/lib/test_util.py::TestCheckCoords::test_atomgroup[False-True-True-True-False-False] PASSED [ 84%] 630s testsuite/MDAnalysisTests/lib/test_util.py::TestCheckCoords::test_atomgroup[False-True-True-False-True-True] PASSED [ 84%] 630s testsuite/MDAnalysisTests/lib/test_util.py::TestCheckCoords::test_atomgroup[False-True-True-False-True-False] PASSED [ 84%] 630s testsuite/MDAnalysisTests/lib/test_util.py::TestCheckCoords::test_atomgroup[False-True-True-False-False-True] PASSED [ 84%] 631s testsuite/MDAnalysisTests/lib/test_util.py::TestCheckCoords::test_atomgroup[False-True-True-False-False-False] PASSED [ 84%] 631s testsuite/MDAnalysisTests/lib/test_util.py::TestCheckCoords::test_atomgroup[False-True-False-True-True-True] PASSED [ 84%] 631s testsuite/MDAnalysisTests/lib/test_util.py::TestCheckCoords::test_atomgroup[False-True-False-True-True-False] PASSED [ 84%] 631s testsuite/MDAnalysisTests/lib/test_util.py::TestCheckCoords::test_atomgroup[False-True-False-True-False-True] PASSED [ 84%] 631s testsuite/MDAnalysisTests/lib/test_util.py::TestCheckCoords::test_atomgroup[False-True-False-True-False-False] PASSED [ 84%] 631s testsuite/MDAnalysisTests/lib/test_util.py::TestCheckCoords::test_atomgroup[False-True-False-False-True-True] PASSED [ 84%] 631s testsuite/MDAnalysisTests/lib/test_util.py::TestCheckCoords::test_atomgroup[False-True-False-False-True-False] PASSED [ 84%] 631s testsuite/MDAnalysisTests/lib/test_util.py::TestCheckCoords::test_atomgroup[False-True-False-False-False-True] PASSED [ 84%] 631s testsuite/MDAnalysisTests/lib/test_util.py::TestCheckCoords::test_atomgroup[False-True-False-False-False-False] PASSED [ 84%] 631s testsuite/MDAnalysisTests/lib/test_util.py::TestCheckCoords::test_atomgroup[False-False-True-True-True-True] PASSED [ 84%] 631s testsuite/MDAnalysisTests/lib/test_util.py::TestCheckCoords::test_atomgroup[False-False-True-True-True-False] PASSED [ 84%] 631s testsuite/MDAnalysisTests/lib/test_util.py::TestCheckCoords::test_atomgroup[False-False-True-True-False-True] PASSED [ 84%] 631s testsuite/MDAnalysisTests/lib/test_util.py::TestCheckCoords::test_atomgroup[False-False-True-True-False-False] PASSED [ 84%] 631s testsuite/MDAnalysisTests/lib/test_util.py::TestCheckCoords::test_atomgroup[False-False-True-False-True-True] PASSED [ 84%] 631s testsuite/MDAnalysisTests/lib/test_util.py::TestCheckCoords::test_atomgroup[False-False-True-False-True-False] PASSED [ 84%] 632s testsuite/MDAnalysisTests/lib/test_util.py::TestCheckCoords::test_atomgroup[False-False-True-False-False-True] PASSED [ 84%] 632s testsuite/MDAnalysisTests/lib/test_util.py::TestCheckCoords::test_atomgroup[False-False-True-False-False-False] PASSED [ 84%] 632s testsuite/MDAnalysisTests/lib/test_util.py::TestCheckCoords::test_atomgroup[False-False-False-True-True-True] PASSED [ 84%] 632s testsuite/MDAnalysisTests/lib/test_util.py::TestCheckCoords::test_atomgroup[False-False-False-True-True-False] PASSED [ 84%] 632s testsuite/MDAnalysisTests/lib/test_util.py::TestCheckCoords::test_atomgroup[False-False-False-True-False-True] PASSED [ 84%] 632s testsuite/MDAnalysisTests/lib/test_util.py::TestCheckCoords::test_atomgroup[False-False-False-True-False-False] PASSED [ 84%] 632s testsuite/MDAnalysisTests/lib/test_util.py::TestCheckCoords::test_atomgroup[False-False-False-False-True-True] PASSED [ 84%] 632s testsuite/MDAnalysisTests/lib/test_util.py::TestCheckCoords::test_atomgroup[False-False-False-False-True-False] PASSED [ 84%] 632s testsuite/MDAnalysisTests/lib/test_util.py::TestCheckCoords::test_atomgroup[False-False-False-False-False-True] PASSED [ 84%] 632s testsuite/MDAnalysisTests/lib/test_util.py::TestCheckCoords::test_atomgroup[False-False-False-False-False-False] PASSED [ 84%] 632s testsuite/MDAnalysisTests/lib/test_util.py::TestCheckCoords::test_atomgroup_not_allowed PASSED [ 84%] 632s testsuite/MDAnalysisTests/lib/test_util.py::TestCheckCoords::test_atomgroup_not_allowed_default PASSED [ 84%] 632s testsuite/MDAnalysisTests/lib/test_util.py::TestCheckCoords::test_enforce_copy PASSED [ 84%] 632s testsuite/MDAnalysisTests/lib/test_util.py::TestCheckCoords::test_no_allow_single PASSED [ 84%] 632s testsuite/MDAnalysisTests/lib/test_util.py::TestCheckCoords::test_no_convert_single PASSED [ 84%] 632s testsuite/MDAnalysisTests/lib/test_util.py::TestCheckCoords::test_no_reduce_result_if_single PASSED [ 84%] 632s testsuite/MDAnalysisTests/lib/test_util.py::TestCheckCoords::test_no_check_lengths_match PASSED [ 84%] 632s testsuite/MDAnalysisTests/lib/test_util.py::TestCheckCoords::test_atomgroup_mismatched_lengths PASSED [ 84%] 632s testsuite/MDAnalysisTests/lib/test_util.py::TestCheckCoords::test_invalid_input PASSED [ 84%] 632s testsuite/MDAnalysisTests/lib/test_util.py::TestCheckCoords::test_usage_with_kwargs PASSED [ 84%] 632s testsuite/MDAnalysisTests/lib/test_util.py::TestCheckCoords::test_wrong_func_call PASSED [ 84%] 632s testsuite/MDAnalysisTests/lib/test_util.py::TestCheckCoords::test_wrong_decorator_usage PASSED [ 84%] 632s testsuite/MDAnalysisTests/lib/test_util.py::test_deprecate[None-None-None-None] PASSED [ 84%] 632s testsuite/MDAnalysisTests/lib/test_util.py::test_deprecate[None-None-None-MDAnalysis.Universe] PASSED [ 84%] 632s testsuite/MDAnalysisTests/lib/test_util.py::test_deprecate[None-None-Multiverse-None] PASSED [ 84%] 632s testsuite/MDAnalysisTests/lib/test_util.py::test_deprecate[None-None-Multiverse-MDAnalysis.Universe] PASSED [ 84%] 632s testsuite/MDAnalysisTests/lib/test_util.py::test_deprecate[None-99.0.0-None-None] PASSED [ 84%] 632s testsuite/MDAnalysisTests/lib/test_util.py::test_deprecate[None-99.0.0-None-MDAnalysis.Universe] PASSED [ 84%] 632s testsuite/MDAnalysisTests/lib/test_util.py::test_deprecate[None-99.0.0-Multiverse-None] PASSED [ 84%] 632s testsuite/MDAnalysisTests/lib/test_util.py::test_deprecate[None-99.0.0-Multiverse-MDAnalysis.Universe] PASSED [ 84%] 632s testsuite/MDAnalysisTests/lib/test_util.py::test_deprecate[None-2099-None-None] PASSED [ 84%] 632s testsuite/MDAnalysisTests/lib/test_util.py::test_deprecate[None-2099-None-MDAnalysis.Universe] PASSED [ 84%] 632s testsuite/MDAnalysisTests/lib/test_util.py::test_deprecate[None-2099-Multiverse-None] PASSED [ 84%] 632s testsuite/MDAnalysisTests/lib/test_util.py::test_deprecate[None-2099-Multiverse-MDAnalysis.Universe] PASSED [ 84%] 632s testsuite/MDAnalysisTests/lib/test_util.py::test_deprecate[use the new stuff-None-None-None] PASSED [ 84%] 632s testsuite/MDAnalysisTests/lib/test_util.py::test_deprecate[use the new stuff-None-None-MDAnalysis.Universe] PASSED [ 84%] 632s testsuite/MDAnalysisTests/lib/test_util.py::test_deprecate[use the new stuff-None-Multiverse-None] PASSED [ 84%] 632s testsuite/MDAnalysisTests/lib/test_util.py::test_deprecate[use the new stuff-None-Multiverse-MDAnalysis.Universe] PASSED [ 84%] 632s testsuite/MDAnalysisTests/lib/test_util.py::test_deprecate[use the new stuff-99.0.0-None-None] PASSED [ 84%] 632s testsuite/MDAnalysisTests/lib/test_util.py::test_deprecate[use the new stuff-99.0.0-None-MDAnalysis.Universe] PASSED [ 84%] 632s testsuite/MDAnalysisTests/lib/test_util.py::test_deprecate[use the new stuff-99.0.0-Multiverse-None] PASSED [ 84%] 632s testsuite/MDAnalysisTests/lib/test_util.py::test_deprecate[use the new stuff-99.0.0-Multiverse-MDAnalysis.Universe] PASSED [ 84%] 632s testsuite/MDAnalysisTests/lib/test_util.py::test_deprecate[use the new stuff-2099-None-None] PASSED [ 84%] 632s testsuite/MDAnalysisTests/lib/test_util.py::test_deprecate[use the new stuff-2099-None-MDAnalysis.Universe] PASSED [ 84%] 632s testsuite/MDAnalysisTests/lib/test_util.py::test_deprecate[use the new stuff-2099-Multiverse-None] PASSED [ 84%] 632s testsuite/MDAnalysisTests/lib/test_util.py::test_deprecate[use the new stuff-2099-Multiverse-MDAnalysis.Universe] PASSED [ 84%] 632s testsuite/MDAnalysisTests/lib/test_util.py::test_deprecate_missing_release_ValueError PASSED [ 84%] 632s testsuite/MDAnalysisTests/lib/test_util.py::test_set_function_name PASSED [ 84%] 632s testsuite/MDAnalysisTests/lib/test_util.py::test_dedent_docstring[] PASSED [ 84%] 632s testsuite/MDAnalysisTests/lib/test_util.py::test_dedent_docstring[one line text] PASSED [ 84%] 632s testsuite/MDAnalysisTests/lib/test_util.py::test_dedent_docstring[ one line with leading space] PASSED [ 84%] 632s testsuite/MDAnalysisTests/lib/test_util.py::test_dedent_docstring[multiline\n\n with some\n leading space] PASSED [ 84%] 632s testsuite/MDAnalysisTests/lib/test_util.py::test_dedent_docstring[ multiline\n\n with all\n leading space] PASSED [ 84%] 632s testsuite/MDAnalysisTests/lib/test_util.py::TestCheckBox::test_check_box_ortho[box0] PASSED [ 84%] 632s testsuite/MDAnalysisTests/lib/test_util.py::TestCheckBox::test_check_box_ortho[box1] PASSED [ 84%] 632s testsuite/MDAnalysisTests/lib/test_util.py::TestCheckBox::test_check_box_ortho[box2] PASSED [ 84%] 632s testsuite/MDAnalysisTests/lib/test_util.py::TestCheckBox::test_check_box_ortho[box3] PASSED [ 84%] 632s testsuite/MDAnalysisTests/lib/test_util.py::TestCheckBox::test_check_box_ortho[box4] PASSED [ 84%] 632s testsuite/MDAnalysisTests/lib/test_util.py::TestCheckBox::test_check_box_ortho[box5] PASSED [ 84%] 632s testsuite/MDAnalysisTests/lib/test_util.py::TestCheckBox::test_check_box_ortho[box6] PASSED [ 84%] 632s testsuite/MDAnalysisTests/lib/test_util.py::TestCheckBox::test_check_box_ortho[box7] PASSED [ 84%] 632s testsuite/MDAnalysisTests/lib/test_util.py::TestCheckBox::test_check_box_None PASSED [ 84%] 632s testsuite/MDAnalysisTests/lib/test_util.py::TestCheckBox::test_check_box_tri_vecs[box0] PASSED [ 84%] 632s testsuite/MDAnalysisTests/lib/test_util.py::TestCheckBox::test_check_box_tri_vecs[box1] PASSED [ 84%] 632s testsuite/MDAnalysisTests/lib/test_util.py::TestCheckBox::test_check_box_tri_vecs[box2] PASSED [ 84%] 632s testsuite/MDAnalysisTests/lib/test_util.py::TestCheckBox::test_check_box_tri_vecs[box3] PASSED [ 84%] 632s testsuite/MDAnalysisTests/lib/test_util.py::TestCheckBox::test_check_box_tri_vecs[box4] PASSED [ 84%] 632s testsuite/MDAnalysisTests/lib/test_util.py::TestCheckBox::test_check_box_tri_vecs[box5] PASSED [ 84%] 632s testsuite/MDAnalysisTests/lib/test_util.py::TestCheckBox::test_check_box_tri_vecs[box6] PASSED [ 84%] 632s testsuite/MDAnalysisTests/lib/test_util.py::TestCheckBox::test_check_box_tri_vecs[box7] PASSED [ 84%] 632s testsuite/MDAnalysisTests/lib/test_util.py::TestCheckBox::test_check_box_wrong_data PASSED [ 84%] 632s testsuite/MDAnalysisTests/lib/test_util.py::TestCheckBox::test_check_box_wrong_shape PASSED [ 85%] 632s testsuite/MDAnalysisTests/lib/test_util.py::TestStoreInitArguments::test_store_arguments_default PASSED [ 85%] 632s testsuite/MDAnalysisTests/lib/test_util.py::TestStoreInitArguments::test_store_arguments_withkwargs PASSED [ 85%] 632s testsuite/MDAnalysisTests/lib/test_util.py::test_which PASSED [ 85%] 633s testsuite/MDAnalysisTests/parallelism/test_multiprocessing.py::test_multiprocess_COG[u0] PASSED [ 85%] 633s testsuite/MDAnalysisTests/parallelism/test_multiprocessing.py::test_multiprocess_COG[u1] PASSED [ 85%] 634s testsuite/MDAnalysisTests/parallelism/test_multiprocessing.py::test_multiprocess_COG[u2] PASSED [ 85%] 634s testsuite/MDAnalysisTests/parallelism/test_multiprocessing.py::test_multiprocess_COG[u3] PASSED [ 85%] 634s testsuite/MDAnalysisTests/parallelism/test_multiprocessing.py::test_multiprocess_COG[u4] PASSED [ 85%] 634s testsuite/MDAnalysisTests/parallelism/test_multiprocessing.py::test_multiprocess_COG[u5] PASSED [ 85%] 634s testsuite/MDAnalysisTests/parallelism/test_multiprocessing.py::test_multiprocess_COG[u6] PASSED [ 85%] 634s testsuite/MDAnalysisTests/parallelism/test_multiprocessing.py::test_multiprocess_COG[u7] SKIPPED [ 85%] 634s testsuite/MDAnalysisTests/parallelism/test_multiprocessing.py::test_multiprocess_COG[u8] PASSED [ 85%] 634s testsuite/MDAnalysisTests/parallelism/test_multiprocessing.py::test_multiprocess_COG[u9] PASSED [ 85%] 636s testsuite/MDAnalysisTests/parallelism/test_multiprocessing.py::test_multiprocess_COG[u10] PASSED [ 85%] 644s testsuite/MDAnalysisTests/parallelism/test_multiprocessing.py::test_multiprocess_COG[u11] PASSED [ 85%] 644s testsuite/MDAnalysisTests/parallelism/test_multiprocessing.py::test_multiprocess_COG[u12] PASSED [ 85%] 644s testsuite/MDAnalysisTests/parallelism/test_multiprocessing.py::test_multiprocess_COG[u13] PASSED [ 85%] 644s testsuite/MDAnalysisTests/parallelism/test_multiprocessing.py::test_multiprocess_COG[u14] PASSED [ 85%] 645s testsuite/MDAnalysisTests/parallelism/test_multiprocessing.py::test_universe_unpickle_in_new_process PASSED [ 85%] 645s testsuite/MDAnalysisTests/parallelism/test_multiprocessing.py::test_creating_multiple_universe_without_offset PASSED [ 85%] 645s testsuite/MDAnalysisTests/parallelism/test_multiprocessing.py::test_readers_pickle[ref_reader0] PASSED [ 85%] 645s testsuite/MDAnalysisTests/parallelism/test_multiprocessing.py::test_readers_pickle[ref_reader1] PASSED [ 85%] 645s testsuite/MDAnalysisTests/parallelism/test_multiprocessing.py::test_readers_pickle[ref_reader2] PASSED [ 85%] 645s testsuite/MDAnalysisTests/parallelism/test_multiprocessing.py::test_readers_pickle[ref_reader3] PASSED [ 85%] 645s testsuite/MDAnalysisTests/parallelism/test_multiprocessing.py::test_readers_pickle[ref_reader4] PASSED [ 85%] 645s testsuite/MDAnalysisTests/parallelism/test_multiprocessing.py::test_readers_pickle[ref_reader5] PASSED [ 85%] 645s testsuite/MDAnalysisTests/parallelism/test_multiprocessing.py::test_readers_pickle[ref_reader6] PASSED [ 85%] 645s testsuite/MDAnalysisTests/parallelism/test_multiprocessing.py::test_readers_pickle[ref_reader7] PASSED [ 85%] 645s testsuite/MDAnalysisTests/parallelism/test_multiprocessing.py::test_readers_pickle[ref_reader8] PASSED [ 85%] 645s testsuite/MDAnalysisTests/parallelism/test_multiprocessing.py::test_readers_pickle[ref_reader9] PASSED [ 85%] 646s testsuite/MDAnalysisTests/parallelism/test_multiprocessing.py::test_readers_pickle[ref_reader10] PASSED [ 85%] 646s testsuite/MDAnalysisTests/parallelism/test_multiprocessing.py::test_readers_pickle[ref_reader11] SKIPPED [ 85%] 646s testsuite/MDAnalysisTests/parallelism/test_multiprocessing.py::test_readers_pickle[ref_reader12] PASSED [ 85%] 646s testsuite/MDAnalysisTests/parallelism/test_multiprocessing.py::test_readers_pickle[ref_reader13] PASSED [ 85%] 646s testsuite/MDAnalysisTests/parallelism/test_multiprocessing.py::test_readers_pickle[ref_reader14] PASSED [ 85%] 646s testsuite/MDAnalysisTests/parallelism/test_multiprocessing.py::test_readers_pickle[ref_reader15] PASSED [ 85%] 646s testsuite/MDAnalysisTests/parallelism/test_multiprocessing.py::test_readers_pickle[ref_reader16] PASSED [ 85%] 646s testsuite/MDAnalysisTests/parallelism/test_multiprocessing.py::test_readers_pickle[ref_reader17] PASSED [ 85%] 646s testsuite/MDAnalysisTests/parallelism/test_multiprocessing.py::test_readers_pickle[ref_reader18] PASSED [ 85%] 646s testsuite/MDAnalysisTests/parallelism/test_multiprocessing.py::test_readers_pickle[ref_reader19] PASSED [ 85%] 646s testsuite/MDAnalysisTests/parallelism/test_multiprocessing.py::test_readers_pickle[ref_reader20] PASSED [ 85%] 646s testsuite/MDAnalysisTests/parallelism/test_multiprocessing.py::test_readers_pickle[ref_reader21] PASSED [ 85%] 646s testsuite/MDAnalysisTests/parallelism/test_multiprocessing.py::test_readers_pickle[ref_reader22] PASSED [ 85%] 646s testsuite/MDAnalysisTests/parallelism/test_multiprocessing.py::test_readers_pickle[ref_reader23] PASSED [ 85%] 646s testsuite/MDAnalysisTests/parallelism/test_multiprocessing.py::test_readers_pickle[ref_reader24] PASSED [ 85%] 646s testsuite/MDAnalysisTests/parallelism/test_multiprocessing.py::test_readers_pickle[ref_reader26] PASSED [ 85%] 646s testsuite/MDAnalysisTests/parallelism/test_multiprocessing.py::test_readers_pickle[ref_reader27] PASSED [ 85%] 647s testsuite/MDAnalysisTests/parallelism/test_multiprocessing.py::test_readers_pickle[ref_reader28] PASSED [ 85%] 651s testsuite/MDAnalysisTests/parallelism/test_multiprocessing.py::test_readers_pickle[ref_reader29] PASSED [ 85%] 651s testsuite/MDAnalysisTests/parallelism/test_multiprocessing.py::test_readers_pickle[ref_reader30] PASSED [ 85%] 651s testsuite/MDAnalysisTests/parallelism/test_multiprocessing.py::test_analysis_pickle PASSED [ 85%] 651s testsuite/MDAnalysisTests/parallelism/test_pickle_transformation.py::test_add_fit_translation_pickle[u0] PASSED [ 85%] 651s testsuite/MDAnalysisTests/parallelism/test_pickle_transformation.py::test_add_fit_rot_trans_pickle[u0] PASSED [ 85%] 651s testsuite/MDAnalysisTests/parallelism/test_pickle_transformation.py::test_add_PositionAverager_pickle[u0] PASSED [ 85%] 651s testsuite/MDAnalysisTests/parallelism/test_pickle_transformation.py::test_add_rotateby_pickle[u0] PASSED [ 85%] 651s testsuite/MDAnalysisTests/parallelism/test_pickle_transformation.py::test_add_translate_pickle[u0] PASSED [ 85%] 651s testsuite/MDAnalysisTests/parallelism/test_pickle_transformation.py::test_add_center_in_box_pickle[u0] PASSED [ 85%] 651s testsuite/MDAnalysisTests/parallelism/test_pickle_transformation.py::test_add_wrap_pickle[u0] PASSED [ 85%] 652s testsuite/MDAnalysisTests/parallelism/test_pickle_transformation.py::test_add_unwrap_pickle[u0] PASSED [ 85%] 652s testsuite/MDAnalysisTests/test_api.py::test_Universe PASSED [ 85%] 652s testsuite/MDAnalysisTests/test_api.py::test_fetch_mmtf PASSED [ 85%] 652s testsuite/MDAnalysisTests/test_api.py::test_Writer PASSED [ 85%] 652s testsuite/MDAnalysisTests/test_api.py::test_AtomGroup PASSED [ 85%] 652s testsuite/MDAnalysisTests/test_api.py::test_ResidueGroup PASSED [ 85%] 652s testsuite/MDAnalysisTests/test_api.py::test_SegmentGroup PASSED [ 85%] 652s testsuite/MDAnalysisTests/test_api.py::test_all_import[] PASSED [ 85%] 652s testsuite/MDAnalysisTests/test_api.py::test_all_import[.core] PASSED [ 85%] 652s testsuite/MDAnalysisTests/test_api.py::test_all_import[.lib] PASSED [ 85%] 652s testsuite/MDAnalysisTests/test_api.py::test_all_import[.lib.formats] PASSED [ 85%] 652s testsuite/MDAnalysisTests/test_api.py::test_all_import[.coordinates] PASSED [ 85%] 652s testsuite/MDAnalysisTests/test_api.py::test_all_import[.tests] PASSED [ 85%] 652s testsuite/MDAnalysisTests/test_api.py::test_all_import[.analysis] PASSED [ 85%] 652s testsuite/MDAnalysisTests/test_api.py::test_all_import[.analysis.data] PASSED [ 85%] 652s testsuite/MDAnalysisTests/test_api.py::test_all_import[.analysis.hbonds] PASSED [ 85%] 652s testsuite/MDAnalysisTests/test_api.py::test_all_import[.analysis.hole2] PASSED [ 85%] 652s testsuite/MDAnalysisTests/test_api.py::test_all_import[.analysis.legacy] PASSED [ 85%] 652s testsuite/MDAnalysisTests/test_api.py::test_all_import[.analysis.encore] PASSED [ 85%] 652s testsuite/MDAnalysisTests/test_api.py::test_all_import[.analysis.encore.clustering] PASSED [ 85%] 652s testsuite/MDAnalysisTests/test_api.py::test_all_import[.analysis.encore.dimensionality_reduction] PASSED [ 85%] 652s testsuite/MDAnalysisTests/test_api.py::test_all_import[.analysis.hydrogenbonds] PASSED [ 85%] 652s testsuite/MDAnalysisTests/test_api.py::test_all_import[.transformations] PASSED [ 85%] 652s testsuite/MDAnalysisTests/test_api.py::test_all_import[.auxiliary] PASSED [ 85%] 652s testsuite/MDAnalysisTests/test_api.py::test_all_import[.selections] PASSED [ 85%] 652s testsuite/MDAnalysisTests/test_api.py::test_all_import[.topology] PASSED [ 85%] 652s testsuite/MDAnalysisTests/test_api.py::test_all_import[.topology.tpr] PASSED [ 85%] 652s testsuite/MDAnalysisTests/test_api.py::test_all_import[.visualization] PASSED [ 85%] 652s testsuite/MDAnalysisTests/test_api.py::test_all_import[.converters] PASSED [ 85%] 653s testsuite/MDAnalysisTests/topology/test_altloc.py::test_atomgroups PASSED [ 85%] 654s testsuite/MDAnalysisTests/topology/test_altloc.py::test_bonds PASSED [ 85%] 657s testsuite/MDAnalysisTests/topology/test_altloc.py::test_write_read PASSED [ 85%] 657s testsuite/MDAnalysisTests/topology/test_crd.py::TestCRDParser::test_output PASSED [ 85%] 657s testsuite/MDAnalysisTests/topology/test_crd.py::TestCRDParser::test_mandatory_attributes PASSED [ 85%] 657s testsuite/MDAnalysisTests/topology/test_crd.py::TestCRDParser::test_expected_attributes PASSED [ 85%] 657s testsuite/MDAnalysisTests/topology/test_crd.py::TestCRDParser::test_no_unexpected_attributes PASSED [ 85%] 657s testsuite/MDAnalysisTests/topology/test_crd.py::TestCRDParser::test_guessed_attributes PASSED [ 85%] 657s testsuite/MDAnalysisTests/topology/test_crd.py::TestCRDParser::test_size PASSED [ 85%] 657s testsuite/MDAnalysisTests/topology/test_crd.py::TestCRDParser::test_tt_size PASSED [ 85%] 657s testsuite/MDAnalysisTests/topology/test_crd.py::TestCRDParser::test_creates_universe PASSED [ 85%] 657s testsuite/MDAnalysisTests/topology/test_dlpoly.py::TestDLPHistoryParser::test_output PASSED [ 85%] 657s testsuite/MDAnalysisTests/topology/test_dlpoly.py::TestDLPHistoryParser::test_mandatory_attributes PASSED [ 85%] 657s testsuite/MDAnalysisTests/topology/test_dlpoly.py::TestDLPHistoryParser::test_expected_attributes PASSED [ 85%] 657s testsuite/MDAnalysisTests/topology/test_dlpoly.py::TestDLPHistoryParser::test_no_unexpected_attributes PASSED [ 85%] 657s testsuite/MDAnalysisTests/topology/test_dlpoly.py::TestDLPHistoryParser::test_guessed_attributes PASSED [ 85%] 657s testsuite/MDAnalysisTests/topology/test_dlpoly.py::TestDLPHistoryParser::test_size PASSED [ 85%] 657s testsuite/MDAnalysisTests/topology/test_dlpoly.py::TestDLPHistoryParser::test_tt_size PASSED [ 85%] 657s testsuite/MDAnalysisTests/topology/test_dlpoly.py::TestDLPHistoryParser::test_creates_universe PASSED [ 85%] 657s testsuite/MDAnalysisTests/topology/test_dlpoly.py::TestDLPHistoryParser::test_names PASSED [ 85%] 657s testsuite/MDAnalysisTests/topology/test_dlpoly.py::TestDLPConfigParser::test_output PASSED [ 85%] 657s testsuite/MDAnalysisTests/topology/test_dlpoly.py::TestDLPConfigParser::test_mandatory_attributes PASSED [ 85%] 657s testsuite/MDAnalysisTests/topology/test_dlpoly.py::TestDLPConfigParser::test_expected_attributes PASSED [ 85%] 657s testsuite/MDAnalysisTests/topology/test_dlpoly.py::TestDLPConfigParser::test_no_unexpected_attributes PASSED [ 85%] 657s testsuite/MDAnalysisTests/topology/test_dlpoly.py::TestDLPConfigParser::test_guessed_attributes PASSED [ 85%] 657s testsuite/MDAnalysisTests/topology/test_dlpoly.py::TestDLPConfigParser::test_size PASSED [ 85%] 657s testsuite/MDAnalysisTests/topology/test_dlpoly.py::TestDLPConfigParser::test_tt_size PASSED [ 85%] 657s testsuite/MDAnalysisTests/topology/test_dlpoly.py::TestDLPConfigParser::test_creates_universe PASSED [ 85%] 657s testsuite/MDAnalysisTests/topology/test_dlpoly.py::TestDLPConfigParser::test_names PASSED [ 85%] 657s testsuite/MDAnalysisTests/topology/test_dlpoly.py::TestDLPConfigMinimal::test_output PASSED [ 85%] 657s testsuite/MDAnalysisTests/topology/test_dlpoly.py::TestDLPConfigMinimal::test_mandatory_attributes PASSED [ 85%] 657s testsuite/MDAnalysisTests/topology/test_dlpoly.py::TestDLPConfigMinimal::test_expected_attributes PASSED [ 85%] 657s testsuite/MDAnalysisTests/topology/test_dlpoly.py::TestDLPConfigMinimal::test_no_unexpected_attributes PASSED [ 85%] 657s testsuite/MDAnalysisTests/topology/test_dlpoly.py::TestDLPConfigMinimal::test_guessed_attributes PASSED [ 85%] 657s testsuite/MDAnalysisTests/topology/test_dlpoly.py::TestDLPConfigMinimal::test_size PASSED [ 85%] 657s testsuite/MDAnalysisTests/topology/test_dlpoly.py::TestDLPConfigMinimal::test_tt_size PASSED [ 85%] 657s testsuite/MDAnalysisTests/topology/test_dlpoly.py::TestDLPConfigMinimal::test_creates_universe PASSED [ 85%] 657s testsuite/MDAnalysisTests/topology/test_dlpoly.py::TestDLPConfigMinimal::test_dlp_names PASSED [ 85%] 657s testsuite/MDAnalysisTests/topology/test_dlpoly.py::TestDLPConfigOrder::test_output PASSED [ 85%] 657s testsuite/MDAnalysisTests/topology/test_dlpoly.py::TestDLPConfigOrder::test_mandatory_attributes PASSED [ 85%] 657s testsuite/MDAnalysisTests/topology/test_dlpoly.py::TestDLPConfigOrder::test_expected_attributes PASSED [ 85%] 657s testsuite/MDAnalysisTests/topology/test_dlpoly.py::TestDLPConfigOrder::test_no_unexpected_attributes PASSED [ 85%] 657s testsuite/MDAnalysisTests/topology/test_dlpoly.py::TestDLPConfigOrder::test_guessed_attributes PASSED [ 85%] 657s testsuite/MDAnalysisTests/topology/test_dlpoly.py::TestDLPConfigOrder::test_size PASSED [ 85%] 657s testsuite/MDAnalysisTests/topology/test_dlpoly.py::TestDLPConfigOrder::test_tt_size PASSED [ 85%] 657s testsuite/MDAnalysisTests/topology/test_dlpoly.py::TestDLPConfigOrder::test_creates_universe PASSED [ 85%] 657s testsuite/MDAnalysisTests/topology/test_dlpoly.py::TestDLPConfigOrder::test_dlp_names PASSED [ 85%] 657s testsuite/MDAnalysisTests/topology/test_dlpoly.py::TestDLPHistoryMinimal::test_output PASSED [ 85%] 657s testsuite/MDAnalysisTests/topology/test_dlpoly.py::TestDLPHistoryMinimal::test_mandatory_attributes PASSED [ 85%] 657s testsuite/MDAnalysisTests/topology/test_dlpoly.py::TestDLPHistoryMinimal::test_expected_attributes PASSED [ 85%] 657s testsuite/MDAnalysisTests/topology/test_dlpoly.py::TestDLPHistoryMinimal::test_no_unexpected_attributes PASSED [ 85%] 657s testsuite/MDAnalysisTests/topology/test_dlpoly.py::TestDLPHistoryMinimal::test_guessed_attributes PASSED [ 85%] 657s testsuite/MDAnalysisTests/topology/test_dlpoly.py::TestDLPHistoryMinimal::test_size PASSED [ 85%] 657s testsuite/MDAnalysisTests/topology/test_dlpoly.py::TestDLPHistoryMinimal::test_tt_size PASSED [ 85%] 657s testsuite/MDAnalysisTests/topology/test_dlpoly.py::TestDLPHistoryMinimal::test_creates_universe PASSED [ 85%] 657s testsuite/MDAnalysisTests/topology/test_dlpoly.py::TestDLPHistoryMinimal::test_dlp_names PASSED [ 85%] 657s testsuite/MDAnalysisTests/topology/test_dlpoly.py::TestDLPHistoryOrder::test_output PASSED [ 85%] 657s testsuite/MDAnalysisTests/topology/test_dlpoly.py::TestDLPHistoryOrder::test_mandatory_attributes PASSED [ 85%] 657s testsuite/MDAnalysisTests/topology/test_dlpoly.py::TestDLPHistoryOrder::test_expected_attributes PASSED [ 85%] 657s testsuite/MDAnalysisTests/topology/test_dlpoly.py::TestDLPHistoryOrder::test_no_unexpected_attributes PASSED [ 85%] 657s testsuite/MDAnalysisTests/topology/test_dlpoly.py::TestDLPHistoryOrder::test_guessed_attributes PASSED [ 85%] 657s testsuite/MDAnalysisTests/topology/test_dlpoly.py::TestDLPHistoryOrder::test_size PASSED [ 85%] 657s testsuite/MDAnalysisTests/topology/test_dlpoly.py::TestDLPHistoryOrder::test_tt_size PASSED [ 85%] 657s testsuite/MDAnalysisTests/topology/test_dlpoly.py::TestDLPHistoryOrder::test_creates_universe PASSED [ 85%] 657s testsuite/MDAnalysisTests/topology/test_dlpoly.py::TestDLPHistoryOrder::test_dlp_names PASSED [ 85%] 657s testsuite/MDAnalysisTests/topology/test_dlpoly.py::TestDLPHistoryClassic::test_output PASSED [ 85%] 657s testsuite/MDAnalysisTests/topology/test_dlpoly.py::TestDLPHistoryClassic::test_mandatory_attributes PASSED [ 85%] 657s testsuite/MDAnalysisTests/topology/test_dlpoly.py::TestDLPHistoryClassic::test_expected_attributes PASSED [ 85%] 657s testsuite/MDAnalysisTests/topology/test_dlpoly.py::TestDLPHistoryClassic::test_no_unexpected_attributes PASSED [ 85%] 657s testsuite/MDAnalysisTests/topology/test_dlpoly.py::TestDLPHistoryClassic::test_guessed_attributes PASSED [ 85%] 657s testsuite/MDAnalysisTests/topology/test_dlpoly.py::TestDLPHistoryClassic::test_size PASSED [ 85%] 657s testsuite/MDAnalysisTests/topology/test_dlpoly.py::TestDLPHistoryClassic::test_tt_size PASSED [ 85%] 657s testsuite/MDAnalysisTests/topology/test_dlpoly.py::TestDLPHistoryClassic::test_creates_universe PASSED [ 85%] 657s testsuite/MDAnalysisTests/topology/test_dlpoly.py::TestDLPHistoryClassic::test_dlp_names PASSED [ 85%] 657s testsuite/MDAnalysisTests/topology/test_dlpoly.py::test_HISTORY_EOFError PASSED [ 85%] 657s testsuite/MDAnalysisTests/topology/test_dms.py::TestDMSParser::test_output PASSED [ 85%] 657s testsuite/MDAnalysisTests/topology/test_dms.py::TestDMSParser::test_mandatory_attributes PASSED [ 85%] 657s testsuite/MDAnalysisTests/topology/test_dms.py::TestDMSParser::test_expected_attributes PASSED [ 85%] 657s testsuite/MDAnalysisTests/topology/test_dms.py::TestDMSParser::test_no_unexpected_attributes PASSED [ 85%] 657s testsuite/MDAnalysisTests/topology/test_dms.py::TestDMSParser::test_guessed_attributes PASSED [ 85%] 657s testsuite/MDAnalysisTests/topology/test_dms.py::TestDMSParser::test_size PASSED [ 85%] 657s testsuite/MDAnalysisTests/topology/test_dms.py::TestDMSParser::test_tt_size PASSED [ 85%] 657s testsuite/MDAnalysisTests/topology/test_dms.py::TestDMSParser::test_creates_universe PASSED [ 85%] 657s testsuite/MDAnalysisTests/topology/test_dms.py::TestDMSParser::test_number_of_bonds PASSED [ 85%] 658s testsuite/MDAnalysisTests/topology/test_dms.py::TestDMSParser::test_atomsels PASSED [ 85%] 658s testsuite/MDAnalysisTests/topology/test_dms.py::TestDMSParserNoSegid::test_output PASSED [ 85%] 658s testsuite/MDAnalysisTests/topology/test_dms.py::TestDMSParserNoSegid::test_mandatory_attributes PASSED [ 85%] 658s testsuite/MDAnalysisTests/topology/test_dms.py::TestDMSParserNoSegid::test_expected_attributes PASSED [ 85%] 658s testsuite/MDAnalysisTests/topology/test_dms.py::TestDMSParserNoSegid::test_no_unexpected_attributes PASSED [ 85%] 658s testsuite/MDAnalysisTests/topology/test_dms.py::TestDMSParserNoSegid::test_guessed_attributes PASSED [ 85%] 658s testsuite/MDAnalysisTests/topology/test_dms.py::TestDMSParserNoSegid::test_size PASSED [ 85%] 658s testsuite/MDAnalysisTests/topology/test_dms.py::TestDMSParserNoSegid::test_tt_size PASSED [ 85%] 658s testsuite/MDAnalysisTests/topology/test_dms.py::TestDMSParserNoSegid::test_creates_universe PASSED [ 85%] 658s testsuite/MDAnalysisTests/topology/test_dms.py::TestDMSParserNoSegid::test_number_of_bonds PASSED [ 85%] 658s testsuite/MDAnalysisTests/topology/test_dms.py::TestDMSParserNoSegid::test_atomsels PASSED [ 85%] 658s testsuite/MDAnalysisTests/topology/test_fhiaims.py::TestFHIAIMS::test_output PASSED [ 85%] 658s testsuite/MDAnalysisTests/topology/test_fhiaims.py::TestFHIAIMS::test_mandatory_attributes PASSED [ 86%] 658s testsuite/MDAnalysisTests/topology/test_fhiaims.py::TestFHIAIMS::test_expected_attributes PASSED [ 86%] 658s testsuite/MDAnalysisTests/topology/test_fhiaims.py::TestFHIAIMS::test_no_unexpected_attributes PASSED [ 86%] 658s testsuite/MDAnalysisTests/topology/test_fhiaims.py::TestFHIAIMS::test_guessed_attributes PASSED [ 86%] 658s testsuite/MDAnalysisTests/topology/test_fhiaims.py::TestFHIAIMS::test_size PASSED [ 86%] 658s testsuite/MDAnalysisTests/topology/test_fhiaims.py::TestFHIAIMS::test_tt_size PASSED [ 86%] 658s testsuite/MDAnalysisTests/topology/test_fhiaims.py::TestFHIAIMS::test_creates_universe PASSED [ 86%] 658s testsuite/MDAnalysisTests/topology/test_fhiaims.py::TestFHIAIMS::test_names PASSED [ 86%] 658s testsuite/MDAnalysisTests/topology/test_fhiaims.py::TestFHIAIMS::test_types PASSED [ 86%] 658s testsuite/MDAnalysisTests/topology/test_fhiaims.py::TestFHIAIMS::test_elements PASSED [ 86%] 658s testsuite/MDAnalysisTests/topology/test_fhiaims.py::TestFHIAIMS::test_masses PASSED [ 86%] 658s testsuite/MDAnalysisTests/topology/test_gms.py::TestGMSASYMOPT::test_output PASSED [ 86%] 658s testsuite/MDAnalysisTests/topology/test_gms.py::TestGMSASYMOPT::test_mandatory_attributes PASSED [ 86%] 658s testsuite/MDAnalysisTests/topology/test_gms.py::TestGMSASYMOPT::test_expected_attributes PASSED [ 86%] 658s testsuite/MDAnalysisTests/topology/test_gms.py::TestGMSASYMOPT::test_no_unexpected_attributes PASSED [ 86%] 658s testsuite/MDAnalysisTests/topology/test_gms.py::TestGMSASYMOPT::test_guessed_attributes PASSED [ 86%] 658s testsuite/MDAnalysisTests/topology/test_gms.py::TestGMSASYMOPT::test_size PASSED [ 86%] 658s testsuite/MDAnalysisTests/topology/test_gms.py::TestGMSASYMOPT::test_tt_size PASSED [ 86%] 658s testsuite/MDAnalysisTests/topology/test_gms.py::TestGMSASYMOPT::test_creates_universe PASSED [ 86%] 658s testsuite/MDAnalysisTests/topology/test_gms.py::TestGMSASYMOPT::test_names PASSED [ 86%] 658s testsuite/MDAnalysisTests/topology/test_gms.py::TestGMSASYMOPT::test_types PASSED [ 86%] 658s testsuite/MDAnalysisTests/topology/test_gms.py::TestGMSSYMOPT::test_output PASSED [ 86%] 658s testsuite/MDAnalysisTests/topology/test_gms.py::TestGMSSYMOPT::test_mandatory_attributes PASSED [ 86%] 658s testsuite/MDAnalysisTests/topology/test_gms.py::TestGMSSYMOPT::test_expected_attributes PASSED [ 86%] 658s testsuite/MDAnalysisTests/topology/test_gms.py::TestGMSSYMOPT::test_no_unexpected_attributes PASSED [ 86%] 658s testsuite/MDAnalysisTests/topology/test_gms.py::TestGMSSYMOPT::test_guessed_attributes PASSED [ 86%] 658s testsuite/MDAnalysisTests/topology/test_gms.py::TestGMSSYMOPT::test_size PASSED [ 86%] 658s testsuite/MDAnalysisTests/topology/test_gms.py::TestGMSSYMOPT::test_tt_size PASSED [ 86%] 658s testsuite/MDAnalysisTests/topology/test_gms.py::TestGMSSYMOPT::test_creates_universe PASSED [ 86%] 658s testsuite/MDAnalysisTests/topology/test_gms.py::TestGMSSYMOPT::test_names PASSED [ 86%] 658s testsuite/MDAnalysisTests/topology/test_gms.py::TestGMSSYMOPT::test_types PASSED [ 86%] 658s testsuite/MDAnalysisTests/topology/test_gms.py::TestGMSASYMSURF::test_output PASSED [ 86%] 658s testsuite/MDAnalysisTests/topology/test_gms.py::TestGMSASYMSURF::test_mandatory_attributes PASSED [ 86%] 658s testsuite/MDAnalysisTests/topology/test_gms.py::TestGMSASYMSURF::test_expected_attributes PASSED [ 86%] 658s testsuite/MDAnalysisTests/topology/test_gms.py::TestGMSASYMSURF::test_no_unexpected_attributes PASSED [ 86%] 658s testsuite/MDAnalysisTests/topology/test_gms.py::TestGMSASYMSURF::test_guessed_attributes PASSED [ 86%] 658s testsuite/MDAnalysisTests/topology/test_gms.py::TestGMSASYMSURF::test_size PASSED [ 86%] 658s testsuite/MDAnalysisTests/topology/test_gms.py::TestGMSASYMSURF::test_tt_size PASSED [ 86%] 658s testsuite/MDAnalysisTests/topology/test_gms.py::TestGMSASYMSURF::test_creates_universe PASSED [ 86%] 658s testsuite/MDAnalysisTests/topology/test_gms.py::TestGMSASYMSURF::test_names PASSED [ 86%] 658s testsuite/MDAnalysisTests/topology/test_gms.py::TestGMSASYMSURF::test_types PASSED [ 86%] 658s testsuite/MDAnalysisTests/topology/test_gro.py::TestGROParser::test_output PASSED [ 86%] 659s testsuite/MDAnalysisTests/topology/test_gro.py::TestGROParser::test_mandatory_attributes PASSED [ 86%] 659s testsuite/MDAnalysisTests/topology/test_gro.py::TestGROParser::test_expected_attributes PASSED [ 86%] 659s testsuite/MDAnalysisTests/topology/test_gro.py::TestGROParser::test_no_unexpected_attributes PASSED [ 86%] 659s testsuite/MDAnalysisTests/topology/test_gro.py::TestGROParser::test_guessed_attributes PASSED [ 86%] 660s testsuite/MDAnalysisTests/topology/test_gro.py::TestGROParser::test_size PASSED [ 86%] 660s testsuite/MDAnalysisTests/topology/test_gro.py::TestGROParser::test_tt_size PASSED [ 86%] 660s testsuite/MDAnalysisTests/topology/test_gro.py::TestGROParser::test_creates_universe PASSED [ 86%] 660s testsuite/MDAnalysisTests/topology/test_gro.py::TestGROParser::test_attr_size PASSED [ 86%] 660s testsuite/MDAnalysisTests/topology/test_gro.py::TestGROWideBox::test_atoms PASSED [ 86%] 660s testsuite/MDAnalysisTests/topology/test_gro.py::test_parse_empty_atom_IOerror PASSED [ 86%] 660s testsuite/MDAnalysisTests/topology/test_gro.py::test_parse_missing_atomname_IOerror PASSED [ 86%] 660s testsuite/MDAnalysisTests/topology/test_gro.py::TestGroResidWrapping::test_wrapping_resids[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/residwrap.gro-resids0] PASSED [ 86%] 660s testsuite/MDAnalysisTests/topology/test_gro.py::TestGroResidWrapping::test_wrapping_resids[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/residwrap_0base.gro-resids1] PASSED [ 86%] 660s testsuite/MDAnalysisTests/topology/test_gro.py::test_sameresid_diffresname PASSED [ 86%] 660s testsuite/MDAnalysisTests/topology/test_gsd.py::TestGSDParser::test_output SKIPPED [ 86%] 660s testsuite/MDAnalysisTests/topology/test_gsd.py::TestGSDParser::test_mandatory_attributes SKIPPED [ 86%] 660s testsuite/MDAnalysisTests/topology/test_gsd.py::TestGSDParser::test_expected_attributes SKIPPED [ 86%] 660s testsuite/MDAnalysisTests/topology/test_gsd.py::TestGSDParser::test_no_unexpected_attributes SKIPPED [ 86%] 660s testsuite/MDAnalysisTests/topology/test_gsd.py::TestGSDParser::test_guessed_attributes SKIPPED [ 86%] 660s testsuite/MDAnalysisTests/topology/test_gsd.py::TestGSDParser::test_size SKIPPED [ 86%] 660s testsuite/MDAnalysisTests/topology/test_gsd.py::TestGSDParser::test_tt_size SKIPPED [ 86%] 660s testsuite/MDAnalysisTests/topology/test_gsd.py::TestGSDParser::test_creates_universe SKIPPED [ 86%] 660s testsuite/MDAnalysisTests/topology/test_gsd.py::TestGSDParser::test_attr_size SKIPPED [ 86%] 660s testsuite/MDAnalysisTests/topology/test_gsd.py::TestGSDParser::test_atoms SKIPPED [ 86%] 660s testsuite/MDAnalysisTests/topology/test_gsd.py::TestGSDParser::test_bonds SKIPPED [ 86%] 660s testsuite/MDAnalysisTests/topology/test_gsd.py::TestGSDParser::test_angles SKIPPED [ 86%] 660s testsuite/MDAnalysisTests/topology/test_gsd.py::TestGSDParser::test_dihedrals SKIPPED [ 86%] 660s testsuite/MDAnalysisTests/topology/test_gsd.py::TestGSDParser::test_impropers SKIPPED [ 86%] 660s testsuite/MDAnalysisTests/topology/test_gsd.py::TestGSDParserBonds::test_output SKIPPED [ 86%] 660s testsuite/MDAnalysisTests/topology/test_gsd.py::TestGSDParserBonds::test_mandatory_attributes SKIPPED [ 86%] 660s testsuite/MDAnalysisTests/topology/test_gsd.py::TestGSDParserBonds::test_expected_attributes SKIPPED [ 86%] 660s testsuite/MDAnalysisTests/topology/test_gsd.py::TestGSDParserBonds::test_no_unexpected_attributes SKIPPED [ 86%] 660s testsuite/MDAnalysisTests/topology/test_gsd.py::TestGSDParserBonds::test_guessed_attributes SKIPPED [ 86%] 660s testsuite/MDAnalysisTests/topology/test_gsd.py::TestGSDParserBonds::test_size SKIPPED [ 86%] 660s testsuite/MDAnalysisTests/topology/test_gsd.py::TestGSDParserBonds::test_tt_size SKIPPED [ 86%] 660s testsuite/MDAnalysisTests/topology/test_gsd.py::TestGSDParserBonds::test_creates_universe SKIPPED [ 86%] 660s testsuite/MDAnalysisTests/topology/test_gsd.py::TestGSDParserBonds::test_attr_size SKIPPED [ 86%] 660s testsuite/MDAnalysisTests/topology/test_gsd.py::TestGSDParserBonds::test_atoms SKIPPED [ 86%] 660s testsuite/MDAnalysisTests/topology/test_gsd.py::TestGSDParserBonds::test_bonds SKIPPED [ 86%] 660s testsuite/MDAnalysisTests/topology/test_gsd.py::TestGSDParserBonds::test_angles SKIPPED [ 86%] 660s testsuite/MDAnalysisTests/topology/test_gsd.py::TestGSDParserBonds::test_dihedrals SKIPPED [ 86%] 660s testsuite/MDAnalysisTests/topology/test_gsd.py::TestGSDParserBonds::test_impropers SKIPPED [ 86%] 660s testsuite/MDAnalysisTests/topology/test_gsd.py::TestGSDParserBonds::test_bonds_identity SKIPPED [ 86%] 660s testsuite/MDAnalysisTests/topology/test_gsd.py::TestGSDParserBonds::test_angles_identity SKIPPED [ 86%] 660s testsuite/MDAnalysisTests/topology/test_gsd.py::TestGSDParserBonds::test_dihedrals_identity SKIPPED [ 86%] 660s testsuite/MDAnalysisTests/topology/test_guessers.py::TestGuessMasses::test_guess_masses PASSED [ 86%] 660s testsuite/MDAnalysisTests/topology/test_guessers.py::TestGuessMasses::test_guess_masses_warn PASSED [ 86%] 660s testsuite/MDAnalysisTests/topology/test_guessers.py::TestGuessMasses::test_guess_masses_miss PASSED [ 86%] 660s testsuite/MDAnalysisTests/topology/test_guessers.py::TestGuessMasses::test_get_atom_mass[H-1.008] PASSED [ 86%] 660s testsuite/MDAnalysisTests/topology/test_guessers.py::TestGuessMasses::test_get_atom_mass[XYZ-0.0] PASSED [ 86%] 660s testsuite/MDAnalysisTests/topology/test_guessers.py::TestGuessMasses::test_guess_atom_mass PASSED [ 86%] 660s testsuite/MDAnalysisTests/topology/test_guessers.py::TestGuessTypes::test_guess_types PASSED [ 86%] 660s testsuite/MDAnalysisTests/topology/test_guessers.py::TestGuessTypes::test_guess_atom_element PASSED [ 86%] 660s testsuite/MDAnalysisTests/topology/test_guessers.py::TestGuessTypes::test_guess_atom_element_empty PASSED [ 86%] 660s testsuite/MDAnalysisTests/topology/test_guessers.py::TestGuessTypes::test_guess_atom_element_singledigit PASSED [ 86%] 660s testsuite/MDAnalysisTests/topology/test_guessers.py::TestGuessTypes::test_guess_atom_element_1H PASSED [ 86%] 660s testsuite/MDAnalysisTests/topology/test_guessers.py::TestGuessTypes::test_guess_element_from_name[AO5*-O] PASSED [ 86%] 660s testsuite/MDAnalysisTests/topology/test_guessers.py::TestGuessTypes::test_guess_element_from_name[F--F] PASSED [ 86%] 660s testsuite/MDAnalysisTests/topology/test_guessers.py::TestGuessTypes::test_guess_element_from_name[HB1-H] PASSED [ 86%] 660s testsuite/MDAnalysisTests/topology/test_guessers.py::TestGuessTypes::test_guess_element_from_name[OC2-O] PASSED [ 86%] 660s testsuite/MDAnalysisTests/topology/test_guessers.py::TestGuessTypes::test_guess_element_from_name[1he2-H] PASSED [ 86%] 660s testsuite/MDAnalysisTests/topology/test_guessers.py::TestGuessTypes::test_guess_element_from_name[3hg2-H] PASSED [ 86%] 660s testsuite/MDAnalysisTests/topology/test_guessers.py::TestGuessTypes::test_guess_element_from_name[OH--O] PASSED [ 86%] 660s testsuite/MDAnalysisTests/topology/test_guessers.py::TestGuessTypes::test_guess_element_from_name[HO-H] PASSED [ 86%] 660s testsuite/MDAnalysisTests/topology/test_guessers.py::TestGuessTypes::test_guess_element_from_name[he-H] PASSED [ 86%] 660s testsuite/MDAnalysisTests/topology/test_guessers.py::TestGuessTypes::test_guess_element_from_name[zn-ZN] PASSED [ 86%] 660s testsuite/MDAnalysisTests/topology/test_guessers.py::TestGuessTypes::test_guess_element_from_name[Ca2+-CA] PASSED [ 86%] 660s testsuite/MDAnalysisTests/topology/test_guessers.py::TestGuessTypes::test_guess_element_from_name[CA-C] PASSED [ 86%] 660s testsuite/MDAnalysisTests/topology/test_guessers.py::TestGuessTypes::test_guess_element_from_name[N0A-N] PASSED [ 86%] 660s testsuite/MDAnalysisTests/topology/test_guessers.py::TestGuessTypes::test_guess_element_from_name[C0U-C] PASSED [ 86%] 660s testsuite/MDAnalysisTests/topology/test_guessers.py::TestGuessTypes::test_guess_element_from_name[C0S-C] PASSED [ 86%] 660s testsuite/MDAnalysisTests/topology/test_guessers.py::TestGuessTypes::test_guess_element_from_name[Na+-NA] PASSED [ 86%] 660s testsuite/MDAnalysisTests/topology/test_guessers.py::TestGuessTypes::test_guess_element_from_name[Cu2+-CU] PASSED [ 86%] 660s testsuite/MDAnalysisTests/topology/test_guessers.py::test_guess_charge PASSED [ 86%] 660s testsuite/MDAnalysisTests/topology/test_guessers.py::test_guess_bonds_Error PASSED [ 86%] 660s testsuite/MDAnalysisTests/topology/test_guessers.py::test_guess_impropers PASSED [ 86%] 660s testsuite/MDAnalysisTests/topology/test_guessers.py::test_guess_bonds_water PASSED [ 86%] 661s testsuite/MDAnalysisTests/topology/test_guessers.py::test_guess_bonds_adk PASSED [ 86%] 661s testsuite/MDAnalysisTests/topology/test_guessers.py::test_guess_bonds_peptide PASSED [ 86%] 661s testsuite/MDAnalysisTests/topology/test_guessers.py::test_guess_aromaticities[c1ccccc1] SKIPPED [ 86%] 661s testsuite/MDAnalysisTests/topology/test_guessers.py::test_guess_aromaticities[C1=CC=CC=C1] SKIPPED [ 86%] 661s testsuite/MDAnalysisTests/topology/test_guessers.py::test_guess_aromaticities[CCO] SKIPPED [ 86%] 661s testsuite/MDAnalysisTests/topology/test_guessers.py::test_guess_aromaticities[c1ccccc1Cc1ccccc1] SKIPPED [ 86%] 661s testsuite/MDAnalysisTests/topology/test_guessers.py::test_guess_aromaticities[CN1C=NC2=C1C(=O)N(C(=O)N2C)C] SKIPPED [ 86%] 661s testsuite/MDAnalysisTests/topology/test_guessers.py::test_guess_gasteiger_charges[c1ccccc1] SKIPPED [ 86%] 661s testsuite/MDAnalysisTests/topology/test_guessers.py::test_guess_gasteiger_charges[C1=CC=CC=C1] SKIPPED [ 86%] 661s testsuite/MDAnalysisTests/topology/test_guessers.py::test_guess_gasteiger_charges[CCO] SKIPPED [ 86%] 661s testsuite/MDAnalysisTests/topology/test_guessers.py::test_guess_gasteiger_charges[c1ccccc1Cc1ccccc1] SKIPPED [ 86%] 661s testsuite/MDAnalysisTests/topology/test_guessers.py::test_guess_gasteiger_charges[CN1C=NC2=C1C(=O)N(C(=O)N2C)C] SKIPPED [ 86%] 661s testsuite/MDAnalysisTests/topology/test_hoomdxml.py::TestHoomdXMLParser::test_output PASSED [ 86%] 661s testsuite/MDAnalysisTests/topology/test_hoomdxml.py::TestHoomdXMLParser::test_mandatory_attributes PASSED [ 86%] 661s testsuite/MDAnalysisTests/topology/test_hoomdxml.py::TestHoomdXMLParser::test_expected_attributes PASSED [ 86%] 661s testsuite/MDAnalysisTests/topology/test_hoomdxml.py::TestHoomdXMLParser::test_no_unexpected_attributes PASSED [ 86%] 661s testsuite/MDAnalysisTests/topology/test_hoomdxml.py::TestHoomdXMLParser::test_guessed_attributes PASSED [ 86%] 661s testsuite/MDAnalysisTests/topology/test_hoomdxml.py::TestHoomdXMLParser::test_size PASSED [ 86%] 661s testsuite/MDAnalysisTests/topology/test_hoomdxml.py::TestHoomdXMLParser::test_tt_size PASSED [ 86%] 661s testsuite/MDAnalysisTests/topology/test_hoomdxml.py::TestHoomdXMLParser::test_creates_universe PASSED [ 86%] 661s testsuite/MDAnalysisTests/topology/test_hoomdxml.py::TestHoomdXMLParser::test_attr_size PASSED [ 86%] 661s testsuite/MDAnalysisTests/topology/test_hoomdxml.py::TestHoomdXMLParser::test_bonds PASSED [ 86%] 661s testsuite/MDAnalysisTests/topology/test_hoomdxml.py::TestHoomdXMLParser::test_angles PASSED [ 86%] 661s testsuite/MDAnalysisTests/topology/test_hoomdxml.py::TestHoomdXMLParser::test_dihedrals PASSED [ 86%] 661s testsuite/MDAnalysisTests/topology/test_hoomdxml.py::TestHoomdXMLParser::test_impropers PASSED [ 86%] 661s testsuite/MDAnalysisTests/topology/test_hoomdxml.py::TestHoomdXMLParser::test_bonds_identity PASSED [ 86%] 661s testsuite/MDAnalysisTests/topology/test_hoomdxml.py::TestHoomdXMLParser::test_angles_identity PASSED [ 86%] 661s testsuite/MDAnalysisTests/topology/test_hoomdxml.py::TestHoomdXMLParser::test_dihedrals_identity PASSED [ 86%] 661s testsuite/MDAnalysisTests/topology/test_hoomdxml.py::TestHoomdXMLParser::test_read_masses PASSED [ 86%] 661s testsuite/MDAnalysisTests/topology/test_hoomdxml.py::TestHoomdXMLParser::test_read_charges PASSED [ 86%] 661s testsuite/MDAnalysisTests/topology/test_itp.py::TestITP::test_output PASSED [ 86%] 661s testsuite/MDAnalysisTests/topology/test_itp.py::TestITP::test_mandatory_attributes PASSED [ 86%] 661s testsuite/MDAnalysisTests/topology/test_itp.py::TestITP::test_expected_attributes PASSED [ 86%] 661s testsuite/MDAnalysisTests/topology/test_itp.py::TestITP::test_no_unexpected_attributes PASSED [ 86%] 661s testsuite/MDAnalysisTests/topology/test_itp.py::TestITP::test_guessed_attributes PASSED [ 86%] 661s testsuite/MDAnalysisTests/topology/test_itp.py::TestITP::test_size PASSED [ 86%] 661s testsuite/MDAnalysisTests/topology/test_itp.py::TestITP::test_tt_size PASSED [ 86%] 661s testsuite/MDAnalysisTests/topology/test_itp.py::TestITP::test_creates_universe PASSED [ 86%] 661s testsuite/MDAnalysisTests/topology/test_itp.py::TestITP::test_bonds_total_counts PASSED [ 86%] 661s testsuite/MDAnalysisTests/topology/test_itp.py::TestITP::test_angles_total_counts PASSED [ 86%] 661s testsuite/MDAnalysisTests/topology/test_itp.py::TestITP::test_dihedrals_total_counts PASSED [ 86%] 661s testsuite/MDAnalysisTests/topology/test_itp.py::TestITP::test_impropers_total_counts PASSED [ 86%] 661s testsuite/MDAnalysisTests/topology/test_itp.py::TestITP::test_bonds_atom_counts PASSED [ 86%] 661s testsuite/MDAnalysisTests/topology/test_itp.py::TestITP::test_bonds_values PASSED [ 86%] 661s testsuite/MDAnalysisTests/topology/test_itp.py::TestITP::test_bonds_type PASSED [ 86%] 661s testsuite/MDAnalysisTests/topology/test_itp.py::TestITP::test_angles_atom_counts PASSED [ 86%] 661s testsuite/MDAnalysisTests/topology/test_itp.py::TestITP::test_angles_values PASSED [ 86%] 661s testsuite/MDAnalysisTests/topology/test_itp.py::TestITP::test_angles_type PASSED [ 86%] 661s testsuite/MDAnalysisTests/topology/test_itp.py::TestITP::test_dihedrals_atom_counts PASSED [ 86%] 661s testsuite/MDAnalysisTests/topology/test_itp.py::TestITP::test_dihedrals_multiple_types PASSED [ 86%] 661s testsuite/MDAnalysisTests/topology/test_itp.py::TestITP::test_dihedrals_values PASSED [ 86%] 661s testsuite/MDAnalysisTests/topology/test_itp.py::TestITP::test_dihedrals_type PASSED [ 86%] 661s testsuite/MDAnalysisTests/topology/test_itp.py::TestITP::test_impropers_atom_counts PASSED [ 86%] 661s testsuite/MDAnalysisTests/topology/test_itp.py::TestITP::test_impropers_values PASSED [ 86%] 661s testsuite/MDAnalysisTests/topology/test_itp.py::TestITP::test_impropers_type PASSED [ 86%] 661s testsuite/MDAnalysisTests/topology/test_itp.py::TestITPNoMass::test_output PASSED [ 86%] 661s testsuite/MDAnalysisTests/topology/test_itp.py::TestITPNoMass::test_mandatory_attributes PASSED [ 86%] 661s testsuite/MDAnalysisTests/topology/test_itp.py::TestITPNoMass::test_expected_attributes PASSED [ 86%] 661s testsuite/MDAnalysisTests/topology/test_itp.py::TestITPNoMass::test_no_unexpected_attributes PASSED [ 86%] 661s testsuite/MDAnalysisTests/topology/test_itp.py::TestITPNoMass::test_guessed_attributes PASSED [ 86%] 661s testsuite/MDAnalysisTests/topology/test_itp.py::TestITPNoMass::test_size PASSED [ 86%] 661s testsuite/MDAnalysisTests/topology/test_itp.py::TestITPNoMass::test_tt_size PASSED [ 86%] 661s testsuite/MDAnalysisTests/topology/test_itp.py::TestITPNoMass::test_creates_universe PASSED [ 86%] 661s testsuite/MDAnalysisTests/topology/test_itp.py::TestITPNoMass::test_mass_guess PASSED [ 86%] 661s testsuite/MDAnalysisTests/topology/test_itp.py::TestITPAtomtypes::test_output PASSED [ 86%] 661s testsuite/MDAnalysisTests/topology/test_itp.py::TestITPAtomtypes::test_mandatory_attributes PASSED [ 87%] 661s testsuite/MDAnalysisTests/topology/test_itp.py::TestITPAtomtypes::test_expected_attributes PASSED [ 87%] 661s testsuite/MDAnalysisTests/topology/test_itp.py::TestITPAtomtypes::test_no_unexpected_attributes PASSED [ 87%] 661s testsuite/MDAnalysisTests/topology/test_itp.py::TestITPAtomtypes::test_guessed_attributes PASSED [ 87%] 661s testsuite/MDAnalysisTests/topology/test_itp.py::TestITPAtomtypes::test_size PASSED [ 87%] 661s testsuite/MDAnalysisTests/topology/test_itp.py::TestITPAtomtypes::test_tt_size PASSED [ 87%] 661s testsuite/MDAnalysisTests/topology/test_itp.py::TestITPAtomtypes::test_creates_universe PASSED [ 87%] 661s testsuite/MDAnalysisTests/topology/test_itp.py::TestITPAtomtypes::test_charge_parse PASSED [ 87%] 661s testsuite/MDAnalysisTests/topology/test_itp.py::TestITPAtomtypes::test_mass_parse_or_guess PASSED [ 87%] 661s testsuite/MDAnalysisTests/topology/test_itp.py::TestDifferentDirectivesITP::test_output PASSED [ 87%] 661s testsuite/MDAnalysisTests/topology/test_itp.py::TestDifferentDirectivesITP::test_mandatory_attributes PASSED [ 87%] 661s testsuite/MDAnalysisTests/topology/test_itp.py::TestDifferentDirectivesITP::test_expected_attributes PASSED [ 87%] 661s testsuite/MDAnalysisTests/topology/test_itp.py::TestDifferentDirectivesITP::test_no_unexpected_attributes PASSED [ 87%] 661s testsuite/MDAnalysisTests/topology/test_itp.py::TestDifferentDirectivesITP::test_guessed_attributes PASSED [ 87%] 661s testsuite/MDAnalysisTests/topology/test_itp.py::TestDifferentDirectivesITP::test_size PASSED [ 87%] 661s testsuite/MDAnalysisTests/topology/test_itp.py::TestDifferentDirectivesITP::test_tt_size PASSED [ 87%] 661s testsuite/MDAnalysisTests/topology/test_itp.py::TestDifferentDirectivesITP::test_creates_universe PASSED [ 87%] 661s testsuite/MDAnalysisTests/topology/test_itp.py::TestDifferentDirectivesITP::test_bonds_total_counts PASSED [ 87%] 661s testsuite/MDAnalysisTests/topology/test_itp.py::TestDifferentDirectivesITP::test_angles_total_counts PASSED [ 87%] 661s testsuite/MDAnalysisTests/topology/test_itp.py::TestDifferentDirectivesITP::test_dihedrals_total_counts PASSED [ 87%] 661s testsuite/MDAnalysisTests/topology/test_itp.py::TestDifferentDirectivesITP::test_impropers_total_counts PASSED [ 87%] 661s testsuite/MDAnalysisTests/topology/test_itp.py::TestDifferentDirectivesITP::test_no_extra_angles PASSED [ 87%] 661s testsuite/MDAnalysisTests/topology/test_itp.py::TestDifferentDirectivesITP::test_bonds_atom_counts PASSED [ 87%] 661s testsuite/MDAnalysisTests/topology/test_itp.py::TestDifferentDirectivesITP::test_dihedrals_atom_counts PASSED [ 87%] 661s testsuite/MDAnalysisTests/topology/test_itp.py::TestDifferentDirectivesITP::test_dihedrals_identity PASSED [ 87%] 661s testsuite/MDAnalysisTests/topology/test_itp.py::TestITPNoKeywords::test_output PASSED [ 87%] 661s testsuite/MDAnalysisTests/topology/test_itp.py::TestITPNoKeywords::test_mandatory_attributes PASSED [ 87%] 661s testsuite/MDAnalysisTests/topology/test_itp.py::TestITPNoKeywords::test_expected_attributes PASSED [ 87%] 661s testsuite/MDAnalysisTests/topology/test_itp.py::TestITPNoKeywords::test_no_unexpected_attributes PASSED [ 87%] 661s testsuite/MDAnalysisTests/topology/test_itp.py::TestITPNoKeywords::test_guessed_attributes PASSED [ 87%] 661s testsuite/MDAnalysisTests/topology/test_itp.py::TestITPNoKeywords::test_size PASSED [ 87%] 661s testsuite/MDAnalysisTests/topology/test_itp.py::TestITPNoKeywords::test_tt_size PASSED [ 87%] 661s testsuite/MDAnalysisTests/topology/test_itp.py::TestITPNoKeywords::test_creates_universe PASSED [ 87%] 661s testsuite/MDAnalysisTests/topology/test_itp.py::TestITPNoKeywords::test_bonds_total_counts PASSED [ 87%] 661s testsuite/MDAnalysisTests/topology/test_itp.py::TestITPNoKeywords::test_angles_total_counts PASSED [ 87%] 661s testsuite/MDAnalysisTests/topology/test_itp.py::TestITPNoKeywords::test_dihedrals_total_counts PASSED [ 87%] 661s testsuite/MDAnalysisTests/topology/test_itp.py::TestITPNoKeywords::test_impropers_total_counts PASSED [ 87%] 661s testsuite/MDAnalysisTests/topology/test_itp.py::TestITPNoKeywords::test_whether_settles_types PASSED [ 87%] 661s testsuite/MDAnalysisTests/topology/test_itp.py::TestITPNoKeywords::test_bonds_values PASSED [ 87%] 661s testsuite/MDAnalysisTests/topology/test_itp.py::TestITPNoKeywords::test_defines PASSED [ 87%] 661s testsuite/MDAnalysisTests/topology/test_itp.py::TestITPKeywords::test_output PASSED [ 87%] 661s testsuite/MDAnalysisTests/topology/test_itp.py::TestITPKeywords::test_mandatory_attributes PASSED [ 87%] 661s testsuite/MDAnalysisTests/topology/test_itp.py::TestITPKeywords::test_expected_attributes PASSED [ 87%] 661s testsuite/MDAnalysisTests/topology/test_itp.py::TestITPKeywords::test_no_unexpected_attributes PASSED [ 87%] 661s testsuite/MDAnalysisTests/topology/test_itp.py::TestITPKeywords::test_guessed_attributes PASSED [ 87%] 661s testsuite/MDAnalysisTests/topology/test_itp.py::TestITPKeywords::test_size PASSED [ 87%] 661s testsuite/MDAnalysisTests/topology/test_itp.py::TestITPKeywords::test_tt_size PASSED [ 87%] 661s testsuite/MDAnalysisTests/topology/test_itp.py::TestITPKeywords::test_creates_universe PASSED [ 87%] 661s testsuite/MDAnalysisTests/topology/test_itp.py::TestITPKeywords::test_bonds_total_counts PASSED [ 87%] 661s testsuite/MDAnalysisTests/topology/test_itp.py::TestITPKeywords::test_angles_total_counts PASSED [ 87%] 661s testsuite/MDAnalysisTests/topology/test_itp.py::TestITPKeywords::test_dihedrals_total_counts PASSED [ 87%] 661s testsuite/MDAnalysisTests/topology/test_itp.py::TestITPKeywords::test_impropers_total_counts PASSED [ 87%] 661s testsuite/MDAnalysisTests/topology/test_itp.py::TestITPKeywords::test_bonds_values PASSED [ 87%] 661s testsuite/MDAnalysisTests/topology/test_itp.py::TestITPKeywords::test_whether_settles_types PASSED [ 87%] 661s testsuite/MDAnalysisTests/topology/test_itp.py::TestITPKeywords::test_angles_values PASSED [ 87%] 661s testsuite/MDAnalysisTests/topology/test_itp.py::TestITPKeywords::test_defines PASSED [ 87%] 661s testsuite/MDAnalysisTests/topology/test_itp.py::TestITPKeywords::test_kwargs_overrides_defines PASSED [ 87%] 661s testsuite/MDAnalysisTests/topology/test_itp.py::TestNestedIfs::test_output PASSED [ 87%] 661s testsuite/MDAnalysisTests/topology/test_itp.py::TestNestedIfs::test_mandatory_attributes PASSED [ 87%] 661s testsuite/MDAnalysisTests/topology/test_itp.py::TestNestedIfs::test_expected_attributes PASSED [ 87%] 661s testsuite/MDAnalysisTests/topology/test_itp.py::TestNestedIfs::test_no_unexpected_attributes PASSED [ 87%] 661s testsuite/MDAnalysisTests/topology/test_itp.py::TestNestedIfs::test_guessed_attributes PASSED [ 87%] 661s testsuite/MDAnalysisTests/topology/test_itp.py::TestNestedIfs::test_size PASSED [ 87%] 661s testsuite/MDAnalysisTests/topology/test_itp.py::TestNestedIfs::test_tt_size PASSED [ 87%] 661s testsuite/MDAnalysisTests/topology/test_itp.py::TestNestedIfs::test_creates_universe PASSED [ 87%] 661s testsuite/MDAnalysisTests/topology/test_itp.py::TestNestedIfs::test_bonds_total_counts PASSED [ 87%] 661s testsuite/MDAnalysisTests/topology/test_itp.py::TestNestedIfs::test_angles_total_counts PASSED [ 87%] 661s testsuite/MDAnalysisTests/topology/test_itp.py::TestNestedIfs::test_dihedrals_total_counts PASSED [ 87%] 661s testsuite/MDAnalysisTests/topology/test_itp.py::TestNestedIfs::test_impropers_total_counts PASSED [ 87%] 661s testsuite/MDAnalysisTests/topology/test_itp.py::TestNestedIfs::test_heavy_atom PASSED [ 87%] 661s testsuite/MDAnalysisTests/topology/test_itp.py::TestReadTop::test_mandatory_attributes PASSED [ 87%] 661s testsuite/MDAnalysisTests/topology/test_itp.py::TestReadTop::test_expected_attributes PASSED [ 87%] 661s testsuite/MDAnalysisTests/topology/test_itp.py::TestReadTop::test_no_unexpected_attributes PASSED [ 87%] 661s testsuite/MDAnalysisTests/topology/test_itp.py::TestReadTop::test_guessed_attributes PASSED [ 87%] 661s testsuite/MDAnalysisTests/topology/test_itp.py::TestReadTop::test_size PASSED [ 87%] 661s testsuite/MDAnalysisTests/topology/test_itp.py::TestReadTop::test_tt_size PASSED [ 87%] 661s testsuite/MDAnalysisTests/topology/test_itp.py::TestReadTop::test_bonds_total_counts PASSED [ 87%] 661s testsuite/MDAnalysisTests/topology/test_itp.py::TestReadTop::test_angles_total_counts PASSED [ 87%] 661s testsuite/MDAnalysisTests/topology/test_itp.py::TestReadTop::test_dihedrals_total_counts PASSED [ 87%] 661s testsuite/MDAnalysisTests/topology/test_itp.py::TestReadTop::test_impropers_total_counts PASSED [ 87%] 661s testsuite/MDAnalysisTests/topology/test_itp.py::TestReadTop::test_output PASSED [ 87%] 661s testsuite/MDAnalysisTests/topology/test_itp.py::TestReadTop::test_creates_universe PASSED [ 87%] 661s testsuite/MDAnalysisTests/topology/test_itp.py::TestReadTop::test_sequential PASSED [ 87%] 661s testsuite/MDAnalysisTests/topology/test_itp.py::TestErrors::test_no_include PASSED [ 87%] 661s testsuite/MDAnalysisTests/topology/test_itp.py::TestErrors::test_missing_endif PASSED [ 87%] 661s testsuite/MDAnalysisTests/topology/test_itp.py::TestRelativePath::test_relstring PASSED [ 87%] 661s testsuite/MDAnalysisTests/topology/test_itp.py::TestRelativePath::test_relpath PASSED [ 87%] 661s testsuite/MDAnalysisTests/topology/test_itp.py::TestRelativePath::test_relative_path PASSED [ 87%] 661s testsuite/MDAnalysisTests/topology/test_lammpsdata.py::TestLammpsData::test_output PASSED [ 87%] 662s testsuite/MDAnalysisTests/topology/test_lammpsdata.py::TestLammpsData::test_mandatory_attributes PASSED [ 87%] 662s testsuite/MDAnalysisTests/topology/test_lammpsdata.py::TestLammpsData::test_expected_attributes PASSED [ 87%] 662s testsuite/MDAnalysisTests/topology/test_lammpsdata.py::TestLammpsData::test_no_unexpected_attributes PASSED [ 87%] 662s testsuite/MDAnalysisTests/topology/test_lammpsdata.py::TestLammpsData::test_guessed_attributes PASSED [ 87%] 662s testsuite/MDAnalysisTests/topology/test_lammpsdata.py::TestLammpsData::test_size PASSED [ 87%] 662s testsuite/MDAnalysisTests/topology/test_lammpsdata.py::TestLammpsData::test_tt_size PASSED [ 87%] 663s testsuite/MDAnalysisTests/topology/test_lammpsdata.py::TestLammpsData::test_n_atom_types PASSED [ 87%] 663s testsuite/MDAnalysisTests/topology/test_lammpsdata.py::TestLammpsData::test_n_bonds PASSED [ 87%] 663s testsuite/MDAnalysisTests/topology/test_lammpsdata.py::TestLammpsData::test_bond_member PASSED [ 87%] 663s testsuite/MDAnalysisTests/topology/test_lammpsdata.py::TestLammpsData::test_n_angles PASSED [ 87%] 663s testsuite/MDAnalysisTests/topology/test_lammpsdata.py::TestLammpsData::test_angle_member PASSED [ 87%] 663s testsuite/MDAnalysisTests/topology/test_lammpsdata.py::TestLammpsData::test_n_dihedrals PASSED [ 87%] 664s testsuite/MDAnalysisTests/topology/test_lammpsdata.py::TestLammpsData::test_dihedral_member PASSED [ 87%] 664s testsuite/MDAnalysisTests/topology/test_lammpsdata.py::TestLammpsData::test_n_impropers PASSED [ 87%] 664s testsuite/MDAnalysisTests/topology/test_lammpsdata.py::TestLammpsData::test_improper_member PASSED [ 87%] 664s testsuite/MDAnalysisTests/topology/test_lammpsdata.py::TestLammpsData::test_creates_universe PASSED [ 87%] 664s testsuite/MDAnalysisTests/topology/test_lammpsdata.py::TestLAMMPSCNT::test_output[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/lammps/cnt-hexagonal-class1.data] PASSED [ 87%] 664s testsuite/MDAnalysisTests/topology/test_lammpsdata.py::TestLAMMPSCNT::test_output[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/lammps/cnt-hexagonal-class1.data2] PASSED [ 87%] 664s testsuite/MDAnalysisTests/topology/test_lammpsdata.py::TestLAMMPSCNT::test_mandatory_attributes[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/lammps/cnt-hexagonal-class1.data] PASSED [ 87%] 664s testsuite/MDAnalysisTests/topology/test_lammpsdata.py::TestLAMMPSCNT::test_mandatory_attributes[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/lammps/cnt-hexagonal-class1.data2] PASSED [ 87%] 664s testsuite/MDAnalysisTests/topology/test_lammpsdata.py::TestLAMMPSCNT::test_expected_attributes[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/lammps/cnt-hexagonal-class1.data] PASSED [ 87%] 664s testsuite/MDAnalysisTests/topology/test_lammpsdata.py::TestLAMMPSCNT::test_expected_attributes[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/lammps/cnt-hexagonal-class1.data2] PASSED [ 87%] 664s testsuite/MDAnalysisTests/topology/test_lammpsdata.py::TestLAMMPSCNT::test_no_unexpected_attributes[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/lammps/cnt-hexagonal-class1.data] PASSED [ 87%] 664s testsuite/MDAnalysisTests/topology/test_lammpsdata.py::TestLAMMPSCNT::test_no_unexpected_attributes[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/lammps/cnt-hexagonal-class1.data2] PASSED [ 87%] 664s testsuite/MDAnalysisTests/topology/test_lammpsdata.py::TestLAMMPSCNT::test_guessed_attributes[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/lammps/cnt-hexagonal-class1.data] PASSED [ 87%] 664s testsuite/MDAnalysisTests/topology/test_lammpsdata.py::TestLAMMPSCNT::test_guessed_attributes[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/lammps/cnt-hexagonal-class1.data2] PASSED [ 87%] 664s testsuite/MDAnalysisTests/topology/test_lammpsdata.py::TestLAMMPSCNT::test_size[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/lammps/cnt-hexagonal-class1.data] PASSED [ 87%] 664s testsuite/MDAnalysisTests/topology/test_lammpsdata.py::TestLAMMPSCNT::test_size[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/lammps/cnt-hexagonal-class1.data2] PASSED [ 87%] 665s testsuite/MDAnalysisTests/topology/test_lammpsdata.py::TestLAMMPSCNT::test_tt_size[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/lammps/cnt-hexagonal-class1.data] PASSED [ 87%] 665s testsuite/MDAnalysisTests/topology/test_lammpsdata.py::TestLAMMPSCNT::test_tt_size[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/lammps/cnt-hexagonal-class1.data2] PASSED [ 87%] 665s testsuite/MDAnalysisTests/topology/test_lammpsdata.py::TestLAMMPSCNT::test_n_atom_types[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/lammps/cnt-hexagonal-class1.data] PASSED [ 87%] 665s testsuite/MDAnalysisTests/topology/test_lammpsdata.py::TestLAMMPSCNT::test_n_atom_types[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/lammps/cnt-hexagonal-class1.data2] PASSED [ 87%] 665s testsuite/MDAnalysisTests/topology/test_lammpsdata.py::TestLAMMPSCNT::test_n_bonds[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/lammps/cnt-hexagonal-class1.data] PASSED [ 87%] 665s testsuite/MDAnalysisTests/topology/test_lammpsdata.py::TestLAMMPSCNT::test_n_bonds[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/lammps/cnt-hexagonal-class1.data2] PASSED [ 87%] 665s testsuite/MDAnalysisTests/topology/test_lammpsdata.py::TestLAMMPSCNT::test_bond_member[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/lammps/cnt-hexagonal-class1.data] PASSED [ 87%] 665s testsuite/MDAnalysisTests/topology/test_lammpsdata.py::TestLAMMPSCNT::test_bond_member[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/lammps/cnt-hexagonal-class1.data2] PASSED [ 87%] 665s testsuite/MDAnalysisTests/topology/test_lammpsdata.py::TestLAMMPSCNT::test_n_angles[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/lammps/cnt-hexagonal-class1.data] PASSED [ 87%] 665s testsuite/MDAnalysisTests/topology/test_lammpsdata.py::TestLAMMPSCNT::test_n_angles[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/lammps/cnt-hexagonal-class1.data2] PASSED [ 87%] 665s testsuite/MDAnalysisTests/topology/test_lammpsdata.py::TestLAMMPSCNT::test_angle_member[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/lammps/cnt-hexagonal-class1.data] PASSED [ 87%] 665s testsuite/MDAnalysisTests/topology/test_lammpsdata.py::TestLAMMPSCNT::test_angle_member[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/lammps/cnt-hexagonal-class1.data2] PASSED [ 87%] 665s testsuite/MDAnalysisTests/topology/test_lammpsdata.py::TestLAMMPSCNT::test_n_dihedrals[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/lammps/cnt-hexagonal-class1.data] PASSED [ 87%] 665s testsuite/MDAnalysisTests/topology/test_lammpsdata.py::TestLAMMPSCNT::test_n_dihedrals[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/lammps/cnt-hexagonal-class1.data2] PASSED [ 87%] 665s testsuite/MDAnalysisTests/topology/test_lammpsdata.py::TestLAMMPSCNT::test_dihedral_member[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/lammps/cnt-hexagonal-class1.data] PASSED [ 87%] 665s testsuite/MDAnalysisTests/topology/test_lammpsdata.py::TestLAMMPSCNT::test_dihedral_member[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/lammps/cnt-hexagonal-class1.data2] PASSED [ 87%] 665s testsuite/MDAnalysisTests/topology/test_lammpsdata.py::TestLAMMPSCNT::test_n_impropers[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/lammps/cnt-hexagonal-class1.data] PASSED [ 87%] 665s testsuite/MDAnalysisTests/topology/test_lammpsdata.py::TestLAMMPSCNT::test_n_impropers[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/lammps/cnt-hexagonal-class1.data2] PASSED [ 87%] 665s testsuite/MDAnalysisTests/topology/test_lammpsdata.py::TestLAMMPSCNT::test_improper_member[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/lammps/cnt-hexagonal-class1.data] PASSED [ 87%] 665s testsuite/MDAnalysisTests/topology/test_lammpsdata.py::TestLAMMPSCNT::test_improper_member[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/lammps/cnt-hexagonal-class1.data2] PASSED [ 87%] 665s testsuite/MDAnalysisTests/topology/test_lammpsdata.py::TestLAMMPSCNT::test_creates_universe[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/lammps/cnt-hexagonal-class1.data] PASSED [ 87%] 665s testsuite/MDAnalysisTests/topology/test_lammpsdata.py::TestLAMMPSCNT::test_creates_universe[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/lammps/cnt-hexagonal-class1.data2] PASSED [ 87%] 665s testsuite/MDAnalysisTests/topology/test_lammpsdata.py::TestLAMMPSHYD::test_output[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/lammps/hydrogen-class1.data] PASSED [ 87%] 665s testsuite/MDAnalysisTests/topology/test_lammpsdata.py::TestLAMMPSHYD::test_output[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/lammps/hydrogen-class1.data2] PASSED [ 87%] 665s testsuite/MDAnalysisTests/topology/test_lammpsdata.py::TestLAMMPSHYD::test_mandatory_attributes[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/lammps/hydrogen-class1.data] PASSED [ 87%] 665s testsuite/MDAnalysisTests/topology/test_lammpsdata.py::TestLAMMPSHYD::test_mandatory_attributes[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/lammps/hydrogen-class1.data2] PASSED [ 87%] 665s testsuite/MDAnalysisTests/topology/test_lammpsdata.py::TestLAMMPSHYD::test_expected_attributes[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/lammps/hydrogen-class1.data] PASSED [ 87%] 665s testsuite/MDAnalysisTests/topology/test_lammpsdata.py::TestLAMMPSHYD::test_expected_attributes[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/lammps/hydrogen-class1.data2] PASSED [ 87%] 665s testsuite/MDAnalysisTests/topology/test_lammpsdata.py::TestLAMMPSHYD::test_no_unexpected_attributes[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/lammps/hydrogen-class1.data] PASSED [ 87%] 665s testsuite/MDAnalysisTests/topology/test_lammpsdata.py::TestLAMMPSHYD::test_no_unexpected_attributes[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/lammps/hydrogen-class1.data2] PASSED [ 87%] 665s testsuite/MDAnalysisTests/topology/test_lammpsdata.py::TestLAMMPSHYD::test_guessed_attributes[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/lammps/hydrogen-class1.data] PASSED [ 87%] 665s testsuite/MDAnalysisTests/topology/test_lammpsdata.py::TestLAMMPSHYD::test_guessed_attributes[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/lammps/hydrogen-class1.data2] PASSED [ 87%] 665s testsuite/MDAnalysisTests/topology/test_lammpsdata.py::TestLAMMPSHYD::test_size[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/lammps/hydrogen-class1.data] PASSED [ 87%] 665s testsuite/MDAnalysisTests/topology/test_lammpsdata.py::TestLAMMPSHYD::test_size[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/lammps/hydrogen-class1.data2] PASSED [ 87%] 665s testsuite/MDAnalysisTests/topology/test_lammpsdata.py::TestLAMMPSHYD::test_tt_size[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/lammps/hydrogen-class1.data] PASSED [ 87%] 665s testsuite/MDAnalysisTests/topology/test_lammpsdata.py::TestLAMMPSHYD::test_tt_size[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/lammps/hydrogen-class1.data2] PASSED [ 87%] 665s testsuite/MDAnalysisTests/topology/test_lammpsdata.py::TestLAMMPSHYD::test_n_atom_types[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/lammps/hydrogen-class1.data] PASSED [ 87%] 665s testsuite/MDAnalysisTests/topology/test_lammpsdata.py::TestLAMMPSHYD::test_n_atom_types[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/lammps/hydrogen-class1.data2] PASSED [ 87%] 665s testsuite/MDAnalysisTests/topology/test_lammpsdata.py::TestLAMMPSHYD::test_n_bonds[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/lammps/hydrogen-class1.data] PASSED [ 87%] 665s testsuite/MDAnalysisTests/topology/test_lammpsdata.py::TestLAMMPSHYD::test_n_bonds[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/lammps/hydrogen-class1.data2] PASSED [ 87%] 665s testsuite/MDAnalysisTests/topology/test_lammpsdata.py::TestLAMMPSHYD::test_bond_member[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/lammps/hydrogen-class1.data] PASSED [ 87%] 665s testsuite/MDAnalysisTests/topology/test_lammpsdata.py::TestLAMMPSHYD::test_bond_member[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/lammps/hydrogen-class1.data2] PASSED [ 87%] 665s testsuite/MDAnalysisTests/topology/test_lammpsdata.py::TestLAMMPSHYD::test_n_angles[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/lammps/hydrogen-class1.data] PASSED [ 87%] 665s testsuite/MDAnalysisTests/topology/test_lammpsdata.py::TestLAMMPSHYD::test_n_angles[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/lammps/hydrogen-class1.data2] PASSED [ 87%] 665s testsuite/MDAnalysisTests/topology/test_lammpsdata.py::TestLAMMPSHYD::test_angle_member[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/lammps/hydrogen-class1.data] PASSED [ 87%] 665s testsuite/MDAnalysisTests/topology/test_lammpsdata.py::TestLAMMPSHYD::test_angle_member[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/lammps/hydrogen-class1.data2] PASSED [ 87%] 665s testsuite/MDAnalysisTests/topology/test_lammpsdata.py::TestLAMMPSHYD::test_n_dihedrals[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/lammps/hydrogen-class1.data] PASSED [ 87%] 665s testsuite/MDAnalysisTests/topology/test_lammpsdata.py::TestLAMMPSHYD::test_n_dihedrals[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/lammps/hydrogen-class1.data2] PASSED [ 87%] 665s testsuite/MDAnalysisTests/topology/test_lammpsdata.py::TestLAMMPSHYD::test_dihedral_member[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/lammps/hydrogen-class1.data] PASSED [ 87%] 665s testsuite/MDAnalysisTests/topology/test_lammpsdata.py::TestLAMMPSHYD::test_dihedral_member[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/lammps/hydrogen-class1.data2] PASSED [ 87%] 665s testsuite/MDAnalysisTests/topology/test_lammpsdata.py::TestLAMMPSHYD::test_n_impropers[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/lammps/hydrogen-class1.data] PASSED [ 87%] 665s testsuite/MDAnalysisTests/topology/test_lammpsdata.py::TestLAMMPSHYD::test_n_impropers[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/lammps/hydrogen-class1.data2] PASSED [ 87%] 665s testsuite/MDAnalysisTests/topology/test_lammpsdata.py::TestLAMMPSHYD::test_improper_member[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/lammps/hydrogen-class1.data] PASSED [ 87%] 665s testsuite/MDAnalysisTests/topology/test_lammpsdata.py::TestLAMMPSHYD::test_improper_member[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/lammps/hydrogen-class1.data2] PASSED [ 87%] 665s testsuite/MDAnalysisTests/topology/test_lammpsdata.py::TestLAMMPSHYD::test_creates_universe[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/lammps/hydrogen-class1.data] PASSED [ 87%] 665s testsuite/MDAnalysisTests/topology/test_lammpsdata.py::TestLAMMPSHYD::test_creates_universe[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/lammps/hydrogen-class1.data2] PASSED [ 87%] 665s testsuite/MDAnalysisTests/topology/test_lammpsdata.py::TestLAMMPSDeletedAtoms::test_output PASSED [ 87%] 665s testsuite/MDAnalysisTests/topology/test_lammpsdata.py::TestLAMMPSDeletedAtoms::test_mandatory_attributes PASSED [ 87%] 665s testsuite/MDAnalysisTests/topology/test_lammpsdata.py::TestLAMMPSDeletedAtoms::test_expected_attributes PASSED [ 87%] 665s testsuite/MDAnalysisTests/topology/test_lammpsdata.py::TestLAMMPSDeletedAtoms::test_no_unexpected_attributes PASSED [ 87%] 665s testsuite/MDAnalysisTests/topology/test_lammpsdata.py::TestLAMMPSDeletedAtoms::test_guessed_attributes PASSED [ 87%] 665s testsuite/MDAnalysisTests/topology/test_lammpsdata.py::TestLAMMPSDeletedAtoms::test_size PASSED [ 87%] 665s testsuite/MDAnalysisTests/topology/test_lammpsdata.py::TestLAMMPSDeletedAtoms::test_tt_size PASSED [ 87%] 665s testsuite/MDAnalysisTests/topology/test_lammpsdata.py::TestLAMMPSDeletedAtoms::test_n_atom_types PASSED [ 87%] 665s testsuite/MDAnalysisTests/topology/test_lammpsdata.py::TestLAMMPSDeletedAtoms::test_n_bonds PASSED [ 87%] 665s testsuite/MDAnalysisTests/topology/test_lammpsdata.py::TestLAMMPSDeletedAtoms::test_bond_member PASSED [ 87%] 665s testsuite/MDAnalysisTests/topology/test_lammpsdata.py::TestLAMMPSDeletedAtoms::test_n_angles PASSED [ 87%] 665s testsuite/MDAnalysisTests/topology/test_lammpsdata.py::TestLAMMPSDeletedAtoms::test_angle_member PASSED [ 88%] 665s testsuite/MDAnalysisTests/topology/test_lammpsdata.py::TestLAMMPSDeletedAtoms::test_n_dihedrals PASSED [ 88%] 665s testsuite/MDAnalysisTests/topology/test_lammpsdata.py::TestLAMMPSDeletedAtoms::test_dihedral_member PASSED [ 88%] 665s testsuite/MDAnalysisTests/topology/test_lammpsdata.py::TestLAMMPSDeletedAtoms::test_n_impropers PASSED [ 88%] 665s testsuite/MDAnalysisTests/topology/test_lammpsdata.py::TestLAMMPSDeletedAtoms::test_improper_member PASSED [ 88%] 665s testsuite/MDAnalysisTests/topology/test_lammpsdata.py::TestLAMMPSDeletedAtoms::test_creates_universe PASSED [ 88%] 665s testsuite/MDAnalysisTests/topology/test_lammpsdata.py::TestLAMMPSDeletedAtoms::test_atom_ids PASSED [ 88%] 665s testsuite/MDAnalysisTests/topology/test_lammpsdata.py::TestLAMMPSDeletedAtoms::test_traj PASSED [ 88%] 665s testsuite/MDAnalysisTests/topology/test_lammpsdata.py::TestLammpsDataPairIJ::test_output PASSED [ 88%] 665s testsuite/MDAnalysisTests/topology/test_lammpsdata.py::TestLammpsDataPairIJ::test_mandatory_attributes PASSED [ 88%] 665s testsuite/MDAnalysisTests/topology/test_lammpsdata.py::TestLammpsDataPairIJ::test_expected_attributes PASSED [ 88%] 665s testsuite/MDAnalysisTests/topology/test_lammpsdata.py::TestLammpsDataPairIJ::test_no_unexpected_attributes PASSED [ 88%] 665s testsuite/MDAnalysisTests/topology/test_lammpsdata.py::TestLammpsDataPairIJ::test_guessed_attributes PASSED [ 88%] 665s testsuite/MDAnalysisTests/topology/test_lammpsdata.py::TestLammpsDataPairIJ::test_size PASSED [ 88%] 665s testsuite/MDAnalysisTests/topology/test_lammpsdata.py::TestLammpsDataPairIJ::test_tt_size PASSED [ 88%] 665s testsuite/MDAnalysisTests/topology/test_lammpsdata.py::TestLammpsDataPairIJ::test_n_atom_types PASSED [ 88%] 665s testsuite/MDAnalysisTests/topology/test_lammpsdata.py::TestLammpsDataPairIJ::test_n_bonds PASSED [ 88%] 665s testsuite/MDAnalysisTests/topology/test_lammpsdata.py::TestLammpsDataPairIJ::test_bond_member PASSED [ 88%] 665s testsuite/MDAnalysisTests/topology/test_lammpsdata.py::TestLammpsDataPairIJ::test_n_angles PASSED [ 88%] 665s testsuite/MDAnalysisTests/topology/test_lammpsdata.py::TestLammpsDataPairIJ::test_angle_member PASSED [ 88%] 665s testsuite/MDAnalysisTests/topology/test_lammpsdata.py::TestLammpsDataPairIJ::test_n_dihedrals PASSED [ 88%] 665s testsuite/MDAnalysisTests/topology/test_lammpsdata.py::TestLammpsDataPairIJ::test_dihedral_member PASSED [ 88%] 665s testsuite/MDAnalysisTests/topology/test_lammpsdata.py::TestLammpsDataPairIJ::test_n_impropers PASSED [ 88%] 665s testsuite/MDAnalysisTests/topology/test_lammpsdata.py::TestLammpsDataPairIJ::test_improper_member PASSED [ 88%] 665s testsuite/MDAnalysisTests/topology/test_lammpsdata.py::TestLammpsDataPairIJ::test_creates_universe PASSED [ 88%] 665s testsuite/MDAnalysisTests/topology/test_lammpsdata.py::test_noresid PASSED [ 88%] 665s testsuite/MDAnalysisTests/topology/test_lammpsdata.py::test_noresid_failure PASSED [ 88%] 665s testsuite/MDAnalysisTests/topology/test_lammpsdata.py::test_interpret_atom_style PASSED [ 88%] 665s testsuite/MDAnalysisTests/topology/test_lammpsdata.py::test_interpret_atom_style_missing PASSED [ 88%] 665s testsuite/MDAnalysisTests/topology/test_lammpsdata.py::TestDumpParser::test_output PASSED [ 88%] 665s testsuite/MDAnalysisTests/topology/test_lammpsdata.py::TestDumpParser::test_mandatory_attributes PASSED [ 88%] 665s testsuite/MDAnalysisTests/topology/test_lammpsdata.py::TestDumpParser::test_expected_attributes PASSED [ 88%] 665s testsuite/MDAnalysisTests/topology/test_lammpsdata.py::TestDumpParser::test_no_unexpected_attributes PASSED [ 88%] 665s testsuite/MDAnalysisTests/topology/test_lammpsdata.py::TestDumpParser::test_guessed_attributes PASSED [ 88%] 665s testsuite/MDAnalysisTests/topology/test_lammpsdata.py::TestDumpParser::test_size PASSED [ 88%] 665s testsuite/MDAnalysisTests/topology/test_lammpsdata.py::TestDumpParser::test_tt_size PASSED [ 88%] 665s testsuite/MDAnalysisTests/topology/test_lammpsdata.py::TestDumpParser::test_creates_universe PASSED [ 88%] 665s testsuite/MDAnalysisTests/topology/test_lammpsdata.py::TestDumpParser::test_masses_warning PASSED [ 88%] 665s testsuite/MDAnalysisTests/topology/test_lammpsdata.py::TestDumpParser::test_id_ordering PASSED [ 88%] 665s testsuite/MDAnalysisTests/topology/test_lammpsdata.py::TestDumpParserLong::test_output PASSED [ 88%] 665s testsuite/MDAnalysisTests/topology/test_lammpsdata.py::TestDumpParserLong::test_mandatory_attributes PASSED [ 88%] 665s testsuite/MDAnalysisTests/topology/test_lammpsdata.py::TestDumpParserLong::test_expected_attributes PASSED [ 88%] 665s testsuite/MDAnalysisTests/topology/test_lammpsdata.py::TestDumpParserLong::test_no_unexpected_attributes PASSED [ 88%] 665s testsuite/MDAnalysisTests/topology/test_lammpsdata.py::TestDumpParserLong::test_guessed_attributes PASSED [ 88%] 665s testsuite/MDAnalysisTests/topology/test_lammpsdata.py::TestDumpParserLong::test_size PASSED [ 88%] 665s testsuite/MDAnalysisTests/topology/test_lammpsdata.py::TestDumpParserLong::test_tt_size PASSED [ 88%] 665s testsuite/MDAnalysisTests/topology/test_lammpsdata.py::TestDumpParserLong::test_creates_universe PASSED [ 88%] 665s testsuite/MDAnalysisTests/topology/test_lammpsdata.py::TestDumpParserLong::test_masses_warning PASSED [ 88%] 665s testsuite/MDAnalysisTests/topology/test_lammpsdata.py::TestDumpParserLong::test_id_ordering PASSED [ 88%] 665s testsuite/MDAnalysisTests/topology/test_minimal.py::test_minimal_parser[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/adk_dims.dcd-3341] PASSED [ 88%] 665s testsuite/MDAnalysisTests/topology/test_minimal.py::test_minimal_parser[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/Amber/test.inpcrd-5] PASSED [ 88%] 665s testsuite/MDAnalysisTests/topology/test_minimal.py::test_minimal_parser[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/lammps/ifabp_apo_100mM.dcd-12421] PASSED [ 88%] 665s testsuite/MDAnalysisTests/topology/test_minimal.py::test_minimal_parser[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/Amber/bala.ncdf-2661] PASSED [ 88%] 665s testsuite/MDAnalysisTests/topology/test_minimal.py::test_minimal_parser[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/adk_oplsaa.trr-47681] PASSED [ 88%] 665s testsuite/MDAnalysisTests/topology/test_minimal.py::test_minimal_parser[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/adk_oplsaa.xtc-47681] PASSED [ 88%] 665s testsuite/MDAnalysisTests/topology/test_minimal.py::test_minimal_parser[filename6-10] PASSED [ 88%] 665s testsuite/MDAnalysisTests/topology/test_minimal.py::test_universe_with_minimal[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/adk_dims.dcd-3341] PASSED [ 88%] 665s testsuite/MDAnalysisTests/topology/test_minimal.py::test_universe_with_minimal[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/Amber/test.inpcrd-5] PASSED [ 88%] 665s testsuite/MDAnalysisTests/topology/test_minimal.py::test_universe_with_minimal[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/lammps/ifabp_apo_100mM.dcd-12421] PASSED [ 88%] 665s testsuite/MDAnalysisTests/topology/test_minimal.py::test_universe_with_minimal[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/Amber/bala.ncdf-2661] PASSED [ 88%] 665s testsuite/MDAnalysisTests/topology/test_minimal.py::test_universe_with_minimal[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/adk_oplsaa.trr-47681] PASSED [ 88%] 665s testsuite/MDAnalysisTests/topology/test_minimal.py::test_universe_with_minimal[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/adk_oplsaa.xtc-47681] PASSED [ 88%] 665s testsuite/MDAnalysisTests/topology/test_minimal.py::test_universe_with_minimal[filename6-10] PASSED [ 88%] 665s testsuite/MDAnalysisTests/topology/test_minimal.py::test_minimal_parser_fail[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/Amber/ache.mdcrd-252] PASSED [ 88%] 665s testsuite/MDAnalysisTests/topology/test_minimal.py::test_minimal_parser_fail[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/Amber/bala.trj-2661] PASSED [ 88%] 665s testsuite/MDAnalysisTests/topology/test_minimal.py::test_minimal_parser_fail[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/trzfile.trz-8184] PASSED [ 88%] 665s testsuite/MDAnalysisTests/topology/test_minimal.py::test_minimal_n_atoms_kwarg[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/Amber/ache.mdcrd-252] PASSED [ 88%] 665s testsuite/MDAnalysisTests/topology/test_minimal.py::test_minimal_n_atoms_kwarg[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/Amber/bala.trj-2661] PASSED [ 88%] 665s testsuite/MDAnalysisTests/topology/test_minimal.py::test_minimal_n_atoms_kwarg[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/trzfile.trz-8184] PASSED [ 88%] 665s testsuite/MDAnalysisTests/topology/test_minimal.py::test_memory_minimal_parser[array0-fac] PASSED [ 88%] 665s testsuite/MDAnalysisTests/topology/test_minimal.py::test_memory_minimal_parser[array1-fca] PASSED [ 88%] 665s testsuite/MDAnalysisTests/topology/test_minimal.py::test_memory_minimal_parser[array2-afc] PASSED [ 88%] 665s testsuite/MDAnalysisTests/topology/test_minimal.py::test_memory_minimal_parser[array3-acf] PASSED [ 88%] 665s testsuite/MDAnalysisTests/topology/test_minimal.py::test_memory_minimal_parser[array4-cfa] PASSED [ 88%] 665s testsuite/MDAnalysisTests/topology/test_minimal.py::test_memory_minimal_parser[array5-caf] PASSED [ 88%] 665s testsuite/MDAnalysisTests/topology/test_minimal.py::test_memory_universe[array0-fac] PASSED [ 88%] 665s testsuite/MDAnalysisTests/topology/test_minimal.py::test_memory_universe[array1-fca] PASSED [ 88%] 665s testsuite/MDAnalysisTests/topology/test_minimal.py::test_memory_universe[array2-afc] PASSED [ 88%] 665s testsuite/MDAnalysisTests/topology/test_minimal.py::test_memory_universe[array3-acf] PASSED [ 88%] 665s testsuite/MDAnalysisTests/topology/test_minimal.py::test_memory_universe[array4-cfa] PASSED [ 88%] 665s testsuite/MDAnalysisTests/topology/test_minimal.py::test_memory_universe[array5-caf] PASSED [ 88%] 665s testsuite/MDAnalysisTests/topology/test_mmtf.py::TestMMTFParser::test_output PASSED [ 88%] 665s testsuite/MDAnalysisTests/topology/test_mmtf.py::TestMMTFParser::test_mandatory_attributes PASSED [ 88%] 665s testsuite/MDAnalysisTests/topology/test_mmtf.py::TestMMTFParser::test_expected_attributes PASSED [ 88%] 665s testsuite/MDAnalysisTests/topology/test_mmtf.py::TestMMTFParser::test_no_unexpected_attributes PASSED [ 88%] 665s testsuite/MDAnalysisTests/topology/test_mmtf.py::TestMMTFParser::test_guessed_attributes PASSED [ 88%] 665s testsuite/MDAnalysisTests/topology/test_mmtf.py::TestMMTFParser::test_size PASSED [ 88%] 665s testsuite/MDAnalysisTests/topology/test_mmtf.py::TestMMTFParser::test_tt_size PASSED [ 88%] 665s testsuite/MDAnalysisTests/topology/test_mmtf.py::TestMMTFParser::test_creates_universe PASSED [ 88%] 665s testsuite/MDAnalysisTests/topology/test_mmtf.py::TestMMTFParser_gz::test_output PASSED [ 88%] 665s testsuite/MDAnalysisTests/topology/test_mmtf.py::TestMMTFParser_gz::test_mandatory_attributes PASSED [ 88%] 665s testsuite/MDAnalysisTests/topology/test_mmtf.py::TestMMTFParser_gz::test_expected_attributes PASSED [ 88%] 665s testsuite/MDAnalysisTests/topology/test_mmtf.py::TestMMTFParser_gz::test_no_unexpected_attributes PASSED [ 88%] 665s testsuite/MDAnalysisTests/topology/test_mmtf.py::TestMMTFParser_gz::test_guessed_attributes PASSED [ 88%] 665s testsuite/MDAnalysisTests/topology/test_mmtf.py::TestMMTFParser_gz::test_size PASSED [ 88%] 665s testsuite/MDAnalysisTests/topology/test_mmtf.py::TestMMTFParser_gz::test_tt_size PASSED [ 88%] 665s testsuite/MDAnalysisTests/topology/test_mmtf.py::TestMMTFParser_gz::test_creates_universe PASSED [ 88%] 665s testsuite/MDAnalysisTests/topology/test_mmtf.py::TestMMTFSkinny::test_output PASSED [ 88%] 665s testsuite/MDAnalysisTests/topology/test_mmtf.py::TestMMTFSkinny::test_mandatory_attributes PASSED [ 88%] 665s testsuite/MDAnalysisTests/topology/test_mmtf.py::TestMMTFSkinny::test_expected_attributes PASSED [ 88%] 665s testsuite/MDAnalysisTests/topology/test_mmtf.py::TestMMTFSkinny::test_no_unexpected_attributes PASSED [ 88%] 665s testsuite/MDAnalysisTests/topology/test_mmtf.py::TestMMTFSkinny::test_guessed_attributes PASSED [ 88%] 665s testsuite/MDAnalysisTests/topology/test_mmtf.py::TestMMTFSkinny::test_size PASSED [ 88%] 665s testsuite/MDAnalysisTests/topology/test_mmtf.py::TestMMTFSkinny::test_tt_size PASSED [ 88%] 665s testsuite/MDAnalysisTests/topology/test_mmtf.py::TestMMTFSkinny::test_creates_universe PASSED [ 88%] 665s testsuite/MDAnalysisTests/topology/test_mmtf.py::TestMMTFSkinny2::test_output PASSED [ 88%] 665s testsuite/MDAnalysisTests/topology/test_mmtf.py::TestMMTFSkinny2::test_mandatory_attributes PASSED [ 88%] 665s testsuite/MDAnalysisTests/topology/test_mmtf.py::TestMMTFSkinny2::test_expected_attributes PASSED [ 88%] 665s testsuite/MDAnalysisTests/topology/test_mmtf.py::TestMMTFSkinny2::test_no_unexpected_attributes PASSED [ 88%] 665s testsuite/MDAnalysisTests/topology/test_mmtf.py::TestMMTFSkinny2::test_guessed_attributes PASSED [ 88%] 665s testsuite/MDAnalysisTests/topology/test_mmtf.py::TestMMTFSkinny2::test_size PASSED [ 88%] 666s testsuite/MDAnalysisTests/topology/test_mmtf.py::TestMMTFSkinny2::test_tt_size PASSED [ 88%] 666s testsuite/MDAnalysisTests/topology/test_mmtf.py::TestMMTFSkinny2::test_creates_universe PASSED [ 88%] 666s testsuite/MDAnalysisTests/topology/test_mmtf.py::TestMMTFUniverse::test_bonds PASSED [ 88%] 666s testsuite/MDAnalysisTests/topology/test_mmtf.py::TestMMTFUniverse::test_ids PASSED [ 88%] 666s testsuite/MDAnalysisTests/topology/test_mmtf.py::TestMMTFUniverse::test_names PASSED [ 88%] 666s testsuite/MDAnalysisTests/topology/test_mmtf.py::TestMMTFUniverse::test_resnames PASSED [ 88%] 666s testsuite/MDAnalysisTests/topology/test_mmtf.py::TestMMTFUniverse::test_segids PASSED [ 88%] 666s testsuite/MDAnalysisTests/topology/test_mmtf.py::TestMMTFUniverse::test_resids PASSED [ 88%] 666s testsuite/MDAnalysisTests/topology/test_mmtf.py::TestMMTFUniverse::test_occupancies PASSED [ 88%] 666s testsuite/MDAnalysisTests/topology/test_mmtf.py::TestMMTFUniverse::test_bfactors PASSED [ 88%] 666s testsuite/MDAnalysisTests/topology/test_mmtf.py::TestMMTFUniverse::test_types PASSED [ 88%] 666s testsuite/MDAnalysisTests/topology/test_mmtf.py::TestMMTFUniverse::test_models PASSED [ 88%] 666s testsuite/MDAnalysisTests/topology/test_mmtf.py::TestMMTFUniverse::test_icodes PASSED [ 88%] 666s testsuite/MDAnalysisTests/topology/test_mmtf.py::TestMMTFUniverse::test_altlocs PASSED [ 88%] 666s testsuite/MDAnalysisTests/topology/test_mmtf.py::TestMMTFUniverseFromDecoder::test_bonds PASSED [ 88%] 666s testsuite/MDAnalysisTests/topology/test_mmtf.py::TestMMTFUniverseFromDecoder::test_ids PASSED [ 88%] 666s testsuite/MDAnalysisTests/topology/test_mmtf.py::TestMMTFUniverseFromDecoder::test_names PASSED [ 88%] 666s testsuite/MDAnalysisTests/topology/test_mmtf.py::TestMMTFUniverseFromDecoder::test_resnames PASSED [ 88%] 666s testsuite/MDAnalysisTests/topology/test_mmtf.py::TestMMTFUniverseFromDecoder::test_segids PASSED [ 88%] 666s testsuite/MDAnalysisTests/topology/test_mmtf.py::TestMMTFUniverseFromDecoder::test_resids PASSED [ 88%] 666s testsuite/MDAnalysisTests/topology/test_mmtf.py::TestMMTFUniverseFromDecoder::test_occupancies PASSED [ 88%] 666s testsuite/MDAnalysisTests/topology/test_mmtf.py::TestMMTFUniverseFromDecoder::test_bfactors PASSED [ 88%] 666s testsuite/MDAnalysisTests/topology/test_mmtf.py::TestMMTFUniverseFromDecoder::test_types PASSED [ 88%] 666s testsuite/MDAnalysisTests/topology/test_mmtf.py::TestMMTFUniverseFromDecoder::test_models PASSED [ 88%] 666s testsuite/MDAnalysisTests/topology/test_mmtf.py::TestMMTFUniverseFromDecoder::test_icodes PASSED [ 88%] 666s testsuite/MDAnalysisTests/topology/test_mmtf.py::TestMMTFUniverseFromDecoder::test_altlocs PASSED [ 88%] 666s testsuite/MDAnalysisTests/topology/test_mmtf.py::TestMMTFgzUniverse::test_models PASSED [ 88%] 666s testsuite/MDAnalysisTests/topology/test_mmtf.py::TestMMTFgzUniverse::test_universe_models PASSED [ 88%] 666s testsuite/MDAnalysisTests/topology/test_mmtf.py::TestMMTFgzUniverseFromDecoder::test_models PASSED [ 88%] 666s testsuite/MDAnalysisTests/topology/test_mmtf.py::TestMMTFgzUniverseFromDecoder::test_universe_models PASSED [ 88%] 666s testsuite/MDAnalysisTests/topology/test_mmtf.py::TestMMTFFetch::test_bonds PASSED [ 88%] 666s testsuite/MDAnalysisTests/topology/test_mmtf.py::TestMMTFFetch::test_ids PASSED [ 88%] 666s testsuite/MDAnalysisTests/topology/test_mmtf.py::TestMMTFFetch::test_names PASSED [ 88%] 666s testsuite/MDAnalysisTests/topology/test_mmtf.py::TestMMTFFetch::test_resnames PASSED [ 88%] 666s testsuite/MDAnalysisTests/topology/test_mmtf.py::TestMMTFFetch::test_segids PASSED [ 88%] 666s testsuite/MDAnalysisTests/topology/test_mmtf.py::TestMMTFFetch::test_resids PASSED [ 88%] 666s testsuite/MDAnalysisTests/topology/test_mmtf.py::TestMMTFFetch::test_occupancies PASSED [ 88%] 666s testsuite/MDAnalysisTests/topology/test_mmtf.py::TestMMTFFetch::test_bfactors PASSED [ 88%] 666s testsuite/MDAnalysisTests/topology/test_mmtf.py::TestMMTFFetch::test_types PASSED [ 88%] 666s testsuite/MDAnalysisTests/topology/test_mmtf.py::TestMMTFFetch::test_models PASSED [ 88%] 666s testsuite/MDAnalysisTests/topology/test_mmtf.py::TestMMTFFetch::test_icodes PASSED [ 88%] 666s testsuite/MDAnalysisTests/topology/test_mmtf.py::TestMMTFFetch::test_altlocs PASSED [ 88%] 666s testsuite/MDAnalysisTests/topology/test_mmtf.py::TestSelectModels::test_model_selection PASSED [ 88%] 666s testsuite/MDAnalysisTests/topology/test_mmtf.py::TestSelectModels::test_model_multiple PASSED [ 88%] 666s testsuite/MDAnalysisTests/topology/test_mmtf.py::TestSelectModels::test_model_multiple_2 PASSED [ 88%] 666s testsuite/MDAnalysisTests/topology/test_mmtf.py::TestSelectModels::test_model_multiple_3 PASSED [ 88%] 666s testsuite/MDAnalysisTests/topology/test_mmtf.py::TestSelectModels::test_model_multiple_4 PASSED [ 88%] 666s testsuite/MDAnalysisTests/topology/test_mmtf.py::TestSelectModels::test_model_multiple_5 PASSED [ 88%] 666s testsuite/MDAnalysisTests/topology/test_mol2.py::TestMOL2Base::test_output[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/mol2/Molecule.mol2] PASSED [ 88%] 666s testsuite/MDAnalysisTests/topology/test_mol2.py::TestMOL2Base::test_output[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/mol2/Molecules.mol2] PASSED [ 88%] 666s testsuite/MDAnalysisTests/topology/test_mol2.py::TestMOL2Base::test_mandatory_attributes[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/mol2/Molecule.mol2] PASSED [ 88%] 666s testsuite/MDAnalysisTests/topology/test_mol2.py::TestMOL2Base::test_mandatory_attributes[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/mol2/Molecules.mol2] PASSED [ 88%] 666s testsuite/MDAnalysisTests/topology/test_mol2.py::TestMOL2Base::test_expected_attributes[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/mol2/Molecule.mol2] PASSED [ 88%] 666s testsuite/MDAnalysisTests/topology/test_mol2.py::TestMOL2Base::test_expected_attributes[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/mol2/Molecules.mol2] PASSED [ 88%] 666s testsuite/MDAnalysisTests/topology/test_mol2.py::TestMOL2Base::test_no_unexpected_attributes[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/mol2/Molecule.mol2] PASSED [ 88%] 666s testsuite/MDAnalysisTests/topology/test_mol2.py::TestMOL2Base::test_no_unexpected_attributes[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/mol2/Molecules.mol2] PASSED [ 88%] 666s testsuite/MDAnalysisTests/topology/test_mol2.py::TestMOL2Base::test_guessed_attributes[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/mol2/Molecule.mol2] PASSED [ 88%] 666s testsuite/MDAnalysisTests/topology/test_mol2.py::TestMOL2Base::test_guessed_attributes[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/mol2/Molecules.mol2] PASSED [ 88%] 666s testsuite/MDAnalysisTests/topology/test_mol2.py::TestMOL2Base::test_size[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/mol2/Molecule.mol2] PASSED [ 88%] 666s testsuite/MDAnalysisTests/topology/test_mol2.py::TestMOL2Base::test_size[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/mol2/Molecules.mol2] PASSED [ 88%] 666s testsuite/MDAnalysisTests/topology/test_mol2.py::TestMOL2Base::test_tt_size[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/mol2/Molecule.mol2] PASSED [ 88%] 666s testsuite/MDAnalysisTests/topology/test_mol2.py::TestMOL2Base::test_tt_size[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/mol2/Molecules.mol2] PASSED [ 88%] 666s testsuite/MDAnalysisTests/topology/test_mol2.py::TestMOL2Base::test_creates_universe[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/mol2/Molecule.mol2] PASSED [ 88%] 666s testsuite/MDAnalysisTests/topology/test_mol2.py::TestMOL2Base::test_creates_universe[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/mol2/Molecules.mol2] PASSED [ 88%] 666s testsuite/MDAnalysisTests/topology/test_mol2.py::TestMOL2Base::test_attr_size[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/mol2/Molecule.mol2] PASSED [ 88%] 666s testsuite/MDAnalysisTests/topology/test_mol2.py::TestMOL2Base::test_attr_size[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/mol2/Molecules.mol2] PASSED [ 88%] 666s testsuite/MDAnalysisTests/topology/test_mol2.py::TestMOL2Base::test_bonds[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/mol2/Molecule.mol2] PASSED [ 88%] 666s testsuite/MDAnalysisTests/topology/test_mol2.py::TestMOL2Base::test_bonds[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/mol2/Molecules.mol2] PASSED [ 88%] 666s testsuite/MDAnalysisTests/topology/test_mol2.py::test_bond_orders PASSED [ 88%] 666s testsuite/MDAnalysisTests/topology/test_mol2.py::test_elements PASSED [ 88%] 666s testsuite/MDAnalysisTests/topology/test_mol2.py::test_elements_selection PASSED [ 88%] 666s testsuite/MDAnalysisTests/topology/test_mol2.py::test_wrong_elements_warnings PASSED [ 88%] 666s testsuite/MDAnalysisTests/topology/test_mol2.py::test_all_wrong_elements_warnings PASSED [ 88%] 666s testsuite/MDAnalysisTests/topology/test_mol2.py::test_all_elements PASSED [ 88%] 666s testsuite/MDAnalysisTests/topology/test_mol2.py::test_wo_optional_columns PASSED [ 89%] 666s testsuite/MDAnalysisTests/topology/test_mol2.py::test_partial_optional_columns PASSED [ 89%] 666s testsuite/MDAnalysisTests/topology/test_mol2.py::test_mol2_wo_required_columns PASSED [ 89%] 666s testsuite/MDAnalysisTests/topology/test_mol2.py::test_mol2_no_charges PASSED [ 89%] 666s testsuite/MDAnalysisTests/topology/test_mol2.py::test_unformat PASSED [ 89%] 666s testsuite/MDAnalysisTests/topology/test_pdb.py::test_hy36decode[A0000-100000] PASSED [ 89%] 666s testsuite/MDAnalysisTests/topology/test_pdb.py::test_hy36decode[MEGAN-20929695] PASSED [ 89%] 666s testsuite/MDAnalysisTests/topology/test_pdb.py::test_hy36decode[J0NNY-15247214] PASSED [ 89%] 666s testsuite/MDAnalysisTests/topology/test_pdb.py::test_hy36decode[DREW6-6417862] PASSED [ 89%] 666s testsuite/MDAnalysisTests/topology/test_pdb.py::test_hy36decode[ST3V3-31691119] PASSED [ 89%] 666s testsuite/MDAnalysisTests/topology/test_pdb.py::test_hy36decode[ADA8M-719798] PASSED [ 89%] 666s testsuite/MDAnalysisTests/topology/test_pdb.py::test_hy36decode[a0000-43770016] PASSED [ 89%] 666s testsuite/MDAnalysisTests/topology/test_pdb.py::test_hy36decode[megan-64599711] PASSED [ 89%] 666s testsuite/MDAnalysisTests/topology/test_pdb.py::test_hy36decode[j0nny-58917230] PASSED [ 89%] 666s testsuite/MDAnalysisTests/topology/test_pdb.py::test_hy36decode[drew6-50087878] PASSED [ 89%] 666s testsuite/MDAnalysisTests/topology/test_pdb.py::test_hy36decode[st3v3-75361135] PASSED [ 89%] 666s testsuite/MDAnalysisTests/topology/test_pdb.py::test_hy36decode[ada8m-44389814] PASSED [ 89%] 666s testsuite/MDAnalysisTests/topology/test_pdb.py::test_hy36decode[ 6-6] PASSED [ 89%] 666s testsuite/MDAnalysisTests/topology/test_pdb.py::test_hy36decode[ 24-24] PASSED [ 89%] 666s testsuite/MDAnalysisTests/topology/test_pdb.py::test_hy36decode[ 645-645] PASSED [ 89%] 666s testsuite/MDAnalysisTests/topology/test_pdb.py::test_hy36decode[ 4951-4951] PASSED [ 89%] 666s testsuite/MDAnalysisTests/topology/test_pdb.py::test_hy36decode[10267-10267] PASSED [ 89%] 666s testsuite/MDAnalysisTests/topology/test_pdb.py::TestPDBParser::test_output PASSED [ 89%] 667s testsuite/MDAnalysisTests/topology/test_pdb.py::TestPDBParser::test_mandatory_attributes PASSED [ 89%] 667s testsuite/MDAnalysisTests/topology/test_pdb.py::TestPDBParser::test_expected_attributes PASSED [ 89%] 667s testsuite/MDAnalysisTests/topology/test_pdb.py::TestPDBParser::test_no_unexpected_attributes PASSED [ 89%] 668s testsuite/MDAnalysisTests/topology/test_pdb.py::TestPDBParser::test_guessed_attributes PASSED [ 89%] 668s testsuite/MDAnalysisTests/topology/test_pdb.py::TestPDBParser::test_size PASSED [ 89%] 669s testsuite/MDAnalysisTests/topology/test_pdb.py::TestPDBParser::test_tt_size PASSED [ 89%] 669s testsuite/MDAnalysisTests/topology/test_pdb.py::TestPDBParser::test_creates_universe PASSED [ 89%] 669s testsuite/MDAnalysisTests/topology/test_pdb.py::TestPDBParserSegids::test_output PASSED [ 89%] 669s testsuite/MDAnalysisTests/topology/test_pdb.py::TestPDBParserSegids::test_mandatory_attributes PASSED [ 89%] 669s testsuite/MDAnalysisTests/topology/test_pdb.py::TestPDBParserSegids::test_expected_attributes PASSED [ 89%] 669s testsuite/MDAnalysisTests/topology/test_pdb.py::TestPDBParserSegids::test_no_unexpected_attributes PASSED [ 89%] 669s testsuite/MDAnalysisTests/topology/test_pdb.py::TestPDBParserSegids::test_guessed_attributes PASSED [ 89%] 669s testsuite/MDAnalysisTests/topology/test_pdb.py::TestPDBParserSegids::test_size PASSED [ 89%] 669s testsuite/MDAnalysisTests/topology/test_pdb.py::TestPDBParserSegids::test_tt_size PASSED [ 89%] 669s testsuite/MDAnalysisTests/topology/test_pdb.py::TestPDBParserSegids::test_creates_universe PASSED [ 89%] 669s testsuite/MDAnalysisTests/topology/test_pdb.py::TestPDBConect::test_conect_parser PASSED [ 89%] 669s testsuite/MDAnalysisTests/topology/test_pdb.py::TestPDBConect::test_conect_parser_runtime PASSED [ 89%] 669s testsuite/MDAnalysisTests/topology/test_pdb.py::TestPDBConect::test_conect_topo_parser PASSED [ 89%] 669s testsuite/MDAnalysisTests/topology/test_pdb.py::test_conect2ter PASSED [ 89%] 669s testsuite/MDAnalysisTests/topology/test_pdb.py::test_single_conect PASSED [ 89%] 669s testsuite/MDAnalysisTests/topology/test_pdb.py::test_new_chainid_new_res PASSED [ 89%] 669s testsuite/MDAnalysisTests/topology/test_pdb.py::test_sameresid_diffresname PASSED [ 89%] 669s testsuite/MDAnalysisTests/topology/test_pdb.py::test_PDB_record_types PASSED [ 89%] 669s testsuite/MDAnalysisTests/topology/test_pdb.py::test_PDB_no_resid PASSED [ 89%] 669s testsuite/MDAnalysisTests/topology/test_pdb.py::test_PDB_hex PASSED [ 89%] 669s testsuite/MDAnalysisTests/topology/test_pdb.py::test_PDB_metals PASSED [ 89%] 669s testsuite/MDAnalysisTests/topology/test_pdb.py::test_PDB_elements PASSED [ 89%] 669s testsuite/MDAnalysisTests/topology/test_pdb.py::test_missing_elements_noattribute PASSED [ 89%] 669s testsuite/MDAnalysisTests/topology/test_pdb.py::test_wrong_elements_warnings PASSED [ 89%] 669s testsuite/MDAnalysisTests/topology/test_pdb.py::test_nobonds_error PASSED [ 89%] 669s testsuite/MDAnalysisTests/topology/test_pdb.py::test_PDB_charges PASSED [ 89%] 669s testsuite/MDAnalysisTests/topology/test_pdb.py::test_PDB_bad_charges[REMARK Invalid charge assignment - no sign for MG2+\nHETATM 1 CU CU A 1 03.000 00.000 00.000 1.00 00.00 CU2+\nHETATM 2 FE FE A 2 00.000 03.000 00.000 1.00 00.00 Fe2+\nHETATM 3 Mg Mg A 3 03.000 03.000 03.000 1.00 00.00 MG2\nEND\n-2] PASSED [ 89%] 669s testsuite/MDAnalysisTests/topology/test_pdb.py::test_PDB_bad_charges[REMARK Invalid charge format for MG2+\nHETATM 1 CU CU A 1 03.000 00.000 00.000 1.00 00.00 CU2+\nHETATM 2 FE FE A 2 00.000 03.000 00.000 1.00 00.00 Fe2+\nHETATM 3 Mg Mg A 3 03.000 03.000 03.000 1.00 00.00 MG+2\nEND\n-\\+2] PASSED [ 89%] 670s testsuite/MDAnalysisTests/topology/test_pdbqt.py::TestPDBQT::test_output PASSED [ 89%] 670s testsuite/MDAnalysisTests/topology/test_pdbqt.py::TestPDBQT::test_mandatory_attributes PASSED [ 89%] 670s testsuite/MDAnalysisTests/topology/test_pdbqt.py::TestPDBQT::test_expected_attributes PASSED [ 89%] 670s testsuite/MDAnalysisTests/topology/test_pdbqt.py::TestPDBQT::test_no_unexpected_attributes PASSED [ 89%] 670s testsuite/MDAnalysisTests/topology/test_pdbqt.py::TestPDBQT::test_guessed_attributes PASSED [ 89%] 670s testsuite/MDAnalysisTests/topology/test_pdbqt.py::TestPDBQT::test_size PASSED [ 89%] 670s testsuite/MDAnalysisTests/topology/test_pdbqt.py::TestPDBQT::test_tt_size PASSED [ 89%] 670s testsuite/MDAnalysisTests/topology/test_pdbqt.py::TestPDBQT::test_creates_universe PASSED [ 89%] 670s testsuite/MDAnalysisTests/topology/test_pdbqt.py::test_footnote PASSED [ 89%] 670s testsuite/MDAnalysisTests/topology/test_pqr.py::TestPQRParser::test_output PASSED [ 89%] 670s testsuite/MDAnalysisTests/topology/test_pqr.py::TestPQRParser::test_mandatory_attributes PASSED [ 89%] 670s testsuite/MDAnalysisTests/topology/test_pqr.py::TestPQRParser::test_expected_attributes PASSED [ 89%] 670s testsuite/MDAnalysisTests/topology/test_pqr.py::TestPQRParser::test_no_unexpected_attributes PASSED [ 89%] 670s testsuite/MDAnalysisTests/topology/test_pqr.py::TestPQRParser::test_guessed_attributes PASSED [ 89%] 670s testsuite/MDAnalysisTests/topology/test_pqr.py::TestPQRParser::test_size PASSED [ 89%] 670s testsuite/MDAnalysisTests/topology/test_pqr.py::TestPQRParser::test_tt_size PASSED [ 89%] 670s testsuite/MDAnalysisTests/topology/test_pqr.py::TestPQRParser::test_creates_universe PASSED [ 89%] 670s testsuite/MDAnalysisTests/topology/test_pqr.py::TestPQRParser::test_attr_size PASSED [ 89%] 670s testsuite/MDAnalysisTests/topology/test_pqr.py::TestPQRParser2::test_output PASSED [ 89%] 670s testsuite/MDAnalysisTests/topology/test_pqr.py::TestPQRParser2::test_mandatory_attributes PASSED [ 89%] 670s testsuite/MDAnalysisTests/topology/test_pqr.py::TestPQRParser2::test_expected_attributes PASSED [ 89%] 670s testsuite/MDAnalysisTests/topology/test_pqr.py::TestPQRParser2::test_no_unexpected_attributes PASSED [ 89%] 670s testsuite/MDAnalysisTests/topology/test_pqr.py::TestPQRParser2::test_guessed_attributes PASSED [ 89%] 670s testsuite/MDAnalysisTests/topology/test_pqr.py::TestPQRParser2::test_size PASSED [ 89%] 670s testsuite/MDAnalysisTests/topology/test_pqr.py::TestPQRParser2::test_tt_size PASSED [ 89%] 670s testsuite/MDAnalysisTests/topology/test_pqr.py::TestPQRParser2::test_creates_universe PASSED [ 89%] 670s testsuite/MDAnalysisTests/topology/test_pqr.py::TestPQRParser2::test_attr_size PASSED [ 89%] 670s testsuite/MDAnalysisTests/topology/test_pqr.py::test_record_types PASSED [ 89%] 670s testsuite/MDAnalysisTests/topology/test_pqr.py::test_gromacs_flavour PASSED [ 89%] 670s testsuite/MDAnalysisTests/topology/test_psf.py::TestPSFParser::test_output[uncompressed] PASSED [ 89%] 671s testsuite/MDAnalysisTests/topology/test_psf.py::TestPSFParser::test_output[bz2] PASSED [ 89%] 671s testsuite/MDAnalysisTests/topology/test_psf.py::TestPSFParser::test_mandatory_attributes[uncompressed] PASSED [ 89%] 671s testsuite/MDAnalysisTests/topology/test_psf.py::TestPSFParser::test_mandatory_attributes[bz2] PASSED [ 89%] 671s testsuite/MDAnalysisTests/topology/test_psf.py::TestPSFParser::test_expected_attributes[uncompressed] PASSED [ 89%] 671s testsuite/MDAnalysisTests/topology/test_psf.py::TestPSFParser::test_expected_attributes[bz2] PASSED [ 89%] 672s testsuite/MDAnalysisTests/topology/test_psf.py::TestPSFParser::test_no_unexpected_attributes[uncompressed] PASSED [ 89%] 672s testsuite/MDAnalysisTests/topology/test_psf.py::TestPSFParser::test_no_unexpected_attributes[bz2] PASSED [ 89%] 672s testsuite/MDAnalysisTests/topology/test_psf.py::TestPSFParser::test_guessed_attributes[uncompressed] PASSED [ 89%] 672s testsuite/MDAnalysisTests/topology/test_psf.py::TestPSFParser::test_guessed_attributes[bz2] PASSED [ 89%] 672s testsuite/MDAnalysisTests/topology/test_psf.py::TestPSFParser::test_size[uncompressed] PASSED [ 89%] 673s testsuite/MDAnalysisTests/topology/test_psf.py::TestPSFParser::test_size[bz2] PASSED [ 89%] 673s testsuite/MDAnalysisTests/topology/test_psf.py::TestPSFParser::test_tt_size[uncompressed] PASSED [ 89%] 673s testsuite/MDAnalysisTests/topology/test_psf.py::TestPSFParser::test_tt_size[bz2] PASSED [ 89%] 673s testsuite/MDAnalysisTests/topology/test_psf.py::TestPSFParser::test_creates_universe[uncompressed] PASSED [ 89%] 674s testsuite/MDAnalysisTests/topology/test_psf.py::TestPSFParser::test_creates_universe[bz2] PASSED [ 89%] 674s testsuite/MDAnalysisTests/topology/test_psf.py::TestPSFParser::test_bonds_total_counts[uncompressed] PASSED [ 89%] 674s testsuite/MDAnalysisTests/topology/test_psf.py::TestPSFParser::test_bonds_total_counts[bz2] PASSED [ 89%] 674s testsuite/MDAnalysisTests/topology/test_psf.py::TestPSFParser::test_bonds_atom_counts[uncompressed] PASSED [ 89%] 675s testsuite/MDAnalysisTests/topology/test_psf.py::TestPSFParser::test_bonds_atom_counts[bz2] PASSED [ 89%] 675s testsuite/MDAnalysisTests/topology/test_psf.py::TestPSFParser::test_bonds_identity[uncompressed] PASSED [ 89%] 675s testsuite/MDAnalysisTests/topology/test_psf.py::TestPSFParser::test_bonds_identity[bz2] PASSED [ 89%] 675s testsuite/MDAnalysisTests/topology/test_psf.py::TestPSFParser::test_angles_total_counts[uncompressed] PASSED [ 89%] 676s testsuite/MDAnalysisTests/topology/test_psf.py::TestPSFParser::test_angles_total_counts[bz2] PASSED [ 89%] 676s testsuite/MDAnalysisTests/topology/test_psf.py::TestPSFParser::test_angles_atom_counts[uncompressed] PASSED [ 89%] 676s testsuite/MDAnalysisTests/topology/test_psf.py::TestPSFParser::test_angles_atom_counts[bz2] PASSED [ 89%] 676s testsuite/MDAnalysisTests/topology/test_psf.py::TestPSFParser::test_angles_identity[uncompressed] PASSED [ 89%] 677s testsuite/MDAnalysisTests/topology/test_psf.py::TestPSFParser::test_angles_identity[bz2] PASSED [ 89%] 677s testsuite/MDAnalysisTests/topology/test_psf.py::TestPSFParser::test_dihedrals_total_counts[uncompressed] PASSED [ 89%] 677s testsuite/MDAnalysisTests/topology/test_psf.py::TestPSFParser::test_dihedrals_total_counts[bz2] PASSED [ 89%] 677s testsuite/MDAnalysisTests/topology/test_psf.py::TestPSFParser::test_dihedrals_atom_counts[uncompressed] PASSED [ 89%] 678s testsuite/MDAnalysisTests/topology/test_psf.py::TestPSFParser::test_dihedrals_atom_counts[bz2] PASSED [ 89%] 678s testsuite/MDAnalysisTests/topology/test_psf.py::TestPSFParser::test_dihedrals_identity[uncompressed] PASSED [ 89%] 678s testsuite/MDAnalysisTests/topology/test_psf.py::TestPSFParser::test_dihedrals_identity[bz2] PASSED [ 89%] 678s testsuite/MDAnalysisTests/topology/test_psf.py::TestNAMDPSFParser::test_output PASSED [ 89%] 678s testsuite/MDAnalysisTests/topology/test_psf.py::TestNAMDPSFParser::test_mandatory_attributes PASSED [ 89%] 678s testsuite/MDAnalysisTests/topology/test_psf.py::TestNAMDPSFParser::test_expected_attributes PASSED [ 89%] 678s testsuite/MDAnalysisTests/topology/test_psf.py::TestNAMDPSFParser::test_no_unexpected_attributes PASSED [ 89%] 678s testsuite/MDAnalysisTests/topology/test_psf.py::TestNAMDPSFParser::test_guessed_attributes PASSED [ 89%] 678s testsuite/MDAnalysisTests/topology/test_psf.py::TestNAMDPSFParser::test_size PASSED [ 89%] 678s testsuite/MDAnalysisTests/topology/test_psf.py::TestNAMDPSFParser::test_tt_size PASSED [ 89%] 678s testsuite/MDAnalysisTests/topology/test_psf.py::TestNAMDPSFParser::test_creates_universe PASSED [ 89%] 678s testsuite/MDAnalysisTests/topology/test_psf.py::TestPSFParser2::test_output PASSED [ 89%] 678s testsuite/MDAnalysisTests/topology/test_psf.py::TestPSFParser2::test_mandatory_attributes PASSED [ 89%] 678s testsuite/MDAnalysisTests/topology/test_psf.py::TestPSFParser2::test_expected_attributes PASSED [ 89%] 678s testsuite/MDAnalysisTests/topology/test_psf.py::TestPSFParser2::test_no_unexpected_attributes PASSED [ 89%] 678s testsuite/MDAnalysisTests/topology/test_psf.py::TestPSFParser2::test_guessed_attributes PASSED [ 89%] 678s testsuite/MDAnalysisTests/topology/test_psf.py::TestPSFParser2::test_size PASSED [ 89%] 678s testsuite/MDAnalysisTests/topology/test_psf.py::TestPSFParser2::test_tt_size PASSED [ 89%] 678s testsuite/MDAnalysisTests/topology/test_psf.py::TestPSFParser2::test_creates_universe PASSED [ 89%] 678s testsuite/MDAnalysisTests/topology/test_psf.py::TestPSFParser2::test_as_universe_resids PASSED [ 89%] 678s testsuite/MDAnalysisTests/topology/test_psf.py::TestPSFParserNoTop::test_output PASSED [ 89%] 678s testsuite/MDAnalysisTests/topology/test_psf.py::TestPSFParserNoTop::test_mandatory_attributes PASSED [ 89%] 678s testsuite/MDAnalysisTests/topology/test_psf.py::TestPSFParserNoTop::test_expected_attributes PASSED [ 89%] 678s testsuite/MDAnalysisTests/topology/test_psf.py::TestPSFParserNoTop::test_no_unexpected_attributes PASSED [ 89%] 678s testsuite/MDAnalysisTests/topology/test_psf.py::TestPSFParserNoTop::test_guessed_attributes PASSED [ 89%] 678s testsuite/MDAnalysisTests/topology/test_psf.py::TestPSFParserNoTop::test_size PASSED [ 89%] 678s testsuite/MDAnalysisTests/topology/test_psf.py::TestPSFParserNoTop::test_tt_size PASSED [ 89%] 678s testsuite/MDAnalysisTests/topology/test_psf.py::TestPSFParserNoTop::test_creates_universe PASSED [ 89%] 678s testsuite/MDAnalysisTests/topology/test_psf.py::TestPSFParserNoTop::test_bonds_total_counts PASSED [ 89%] 678s testsuite/MDAnalysisTests/topology/test_psf.py::TestPSFParserNoTop::test_angles_total_counts PASSED [ 89%] 678s testsuite/MDAnalysisTests/topology/test_psf.py::TestPSFParserNoTop::test_dihedrals_total_counts PASSED [ 89%] 678s testsuite/MDAnalysisTests/topology/test_psf.py::TestPSFParserNoTop::test_impropers_total_counts PASSED [ 89%] 678s testsuite/MDAnalysisTests/topology/test_psf.py::test_psf_nosegid PASSED [ 89%] 678s testsuite/MDAnalysisTests/topology/test_top.py::TestPRMParser::test_output PASSED [ 89%] 678s testsuite/MDAnalysisTests/topology/test_top.py::TestPRMParser::test_mandatory_attributes PASSED [ 89%] 678s testsuite/MDAnalysisTests/topology/test_top.py::TestPRMParser::test_expected_attributes PASSED [ 89%] 678s testsuite/MDAnalysisTests/topology/test_top.py::TestPRMParser::test_no_unexpected_attributes PASSED [ 89%] 678s testsuite/MDAnalysisTests/topology/test_top.py::TestPRMParser::test_guessed_attributes PASSED [ 89%] 678s testsuite/MDAnalysisTests/topology/test_top.py::TestPRMParser::test_size PASSED [ 89%] 678s testsuite/MDAnalysisTests/topology/test_top.py::TestPRMParser::test_tt_size PASSED [ 89%] 678s testsuite/MDAnalysisTests/topology/test_top.py::TestPRMParser::test_creates_universe PASSED [ 89%] 678s testsuite/MDAnalysisTests/topology/test_top.py::TestPRMParser::test_attr_size PASSED [ 89%] 678s testsuite/MDAnalysisTests/topology/test_top.py::TestPRMParser::test_bonds_atom_counts PASSED [ 89%] 678s testsuite/MDAnalysisTests/topology/test_top.py::TestPRMParser::test_angles_atom_counts PASSED [ 89%] 678s testsuite/MDAnalysisTests/topology/test_top.py::TestPRMParser::test_dihedrals_atom_counts PASSED [ 89%] 678s testsuite/MDAnalysisTests/topology/test_top.py::TestPRMParser::test_impropers_atom_counts PASSED [ 89%] 678s testsuite/MDAnalysisTests/topology/test_top.py::TestPRMParser::test_bonds_identity PASSED [ 89%] 678s testsuite/MDAnalysisTests/topology/test_top.py::TestPRMParser::test_angles_identity PASSED [ 89%] 678s testsuite/MDAnalysisTests/topology/test_top.py::TestPRMParser::test_dihedrals_identity PASSED [ 89%] 678s testsuite/MDAnalysisTests/topology/test_top.py::TestPRMParser::test_impropers_identity PASSED [ 89%] 678s testsuite/MDAnalysisTests/topology/test_top.py::TestPRMParser::test_angle_atoms_bonded PASSED [ 89%] 678s testsuite/MDAnalysisTests/topology/test_top.py::TestPRMParser::test_dihedral_atoms_bonded PASSED [ 89%] 678s testsuite/MDAnalysisTests/topology/test_top.py::TestPRMParser::test_improper_atoms_bonded PASSED [ 89%] 678s testsuite/MDAnalysisTests/topology/test_top.py::TestPRMParser::test_elements PASSED [ 89%] 678s testsuite/MDAnalysisTests/topology/test_top.py::TestPRMChainidParser::test_output PASSED [ 89%] 678s testsuite/MDAnalysisTests/topology/test_top.py::TestPRMChainidParser::test_mandatory_attributes PASSED [ 89%] 678s testsuite/MDAnalysisTests/topology/test_top.py::TestPRMChainidParser::test_expected_attributes PASSED [ 89%] 678s testsuite/MDAnalysisTests/topology/test_top.py::TestPRMChainidParser::test_no_unexpected_attributes PASSED [ 89%] 678s testsuite/MDAnalysisTests/topology/test_top.py::TestPRMChainidParser::test_guessed_attributes PASSED [ 89%] 679s testsuite/MDAnalysisTests/topology/test_top.py::TestPRMChainidParser::test_size PASSED [ 89%] 679s testsuite/MDAnalysisTests/topology/test_top.py::TestPRMChainidParser::test_tt_size PASSED [ 89%] 679s testsuite/MDAnalysisTests/topology/test_top.py::TestPRMChainidParser::test_creates_universe PASSED [ 89%] 679s testsuite/MDAnalysisTests/topology/test_top.py::TestPRMChainidParser::test_attr_size PASSED [ 89%] 679s testsuite/MDAnalysisTests/topology/test_top.py::TestPRMChainidParser::test_bonds_atom_counts PASSED [ 89%] 679s testsuite/MDAnalysisTests/topology/test_top.py::TestPRMChainidParser::test_angles_atom_counts PASSED [ 89%] 679s testsuite/MDAnalysisTests/topology/test_top.py::TestPRMChainidParser::test_dihedrals_atom_counts PASSED [ 89%] 679s testsuite/MDAnalysisTests/topology/test_top.py::TestPRMChainidParser::test_impropers_atom_counts PASSED [ 89%] 679s testsuite/MDAnalysisTests/topology/test_top.py::TestPRMChainidParser::test_bonds_identity PASSED [ 89%] 679s testsuite/MDAnalysisTests/topology/test_top.py::TestPRMChainidParser::test_angles_identity PASSED [ 90%] 679s testsuite/MDAnalysisTests/topology/test_top.py::TestPRMChainidParser::test_dihedrals_identity PASSED [ 90%] 679s testsuite/MDAnalysisTests/topology/test_top.py::TestPRMChainidParser::test_impropers_identity PASSED [ 90%] 679s testsuite/MDAnalysisTests/topology/test_top.py::TestPRMChainidParser::test_angle_atoms_bonded PASSED [ 90%] 679s testsuite/MDAnalysisTests/topology/test_top.py::TestPRMChainidParser::test_dihedral_atoms_bonded PASSED [ 90%] 679s testsuite/MDAnalysisTests/topology/test_top.py::TestPRMChainidParser::test_improper_atoms_bonded PASSED [ 90%] 679s testsuite/MDAnalysisTests/topology/test_top.py::TestPRMChainidParser::test_elements PASSED [ 90%] 679s testsuite/MDAnalysisTests/topology/test_top.py::TestPRMChainidParser::test_chainIDs PASSED [ 90%] 679s testsuite/MDAnalysisTests/topology/test_top.py::TestPRM12Parser::test_output PASSED [ 90%] 679s testsuite/MDAnalysisTests/topology/test_top.py::TestPRM12Parser::test_mandatory_attributes PASSED [ 90%] 679s testsuite/MDAnalysisTests/topology/test_top.py::TestPRM12Parser::test_expected_attributes PASSED [ 90%] 679s testsuite/MDAnalysisTests/topology/test_top.py::TestPRM12Parser::test_no_unexpected_attributes PASSED [ 90%] 679s testsuite/MDAnalysisTests/topology/test_top.py::TestPRM12Parser::test_guessed_attributes PASSED [ 90%] 679s testsuite/MDAnalysisTests/topology/test_top.py::TestPRM12Parser::test_size PASSED [ 90%] 679s testsuite/MDAnalysisTests/topology/test_top.py::TestPRM12Parser::test_tt_size PASSED [ 90%] 680s testsuite/MDAnalysisTests/topology/test_top.py::TestPRM12Parser::test_creates_universe PASSED [ 90%] 680s testsuite/MDAnalysisTests/topology/test_top.py::TestPRM12Parser::test_attr_size PASSED [ 90%] 680s testsuite/MDAnalysisTests/topology/test_top.py::TestPRM12Parser::test_bonds_atom_counts PASSED [ 90%] 680s testsuite/MDAnalysisTests/topology/test_top.py::TestPRM12Parser::test_angles_atom_counts PASSED [ 90%] 680s testsuite/MDAnalysisTests/topology/test_top.py::TestPRM12Parser::test_dihedrals_atom_counts PASSED [ 90%] 680s testsuite/MDAnalysisTests/topology/test_top.py::TestPRM12Parser::test_impropers_atom_counts PASSED [ 90%] 680s testsuite/MDAnalysisTests/topology/test_top.py::TestPRM12Parser::test_bonds_identity PASSED [ 90%] 680s testsuite/MDAnalysisTests/topology/test_top.py::TestPRM12Parser::test_angles_identity PASSED [ 90%] 680s testsuite/MDAnalysisTests/topology/test_top.py::TestPRM12Parser::test_dihedrals_identity PASSED [ 90%] 680s testsuite/MDAnalysisTests/topology/test_top.py::TestPRM12Parser::test_impropers_identity PASSED [ 90%] 680s testsuite/MDAnalysisTests/topology/test_top.py::TestPRM12Parser::test_angle_atoms_bonded PASSED [ 90%] 680s testsuite/MDAnalysisTests/topology/test_top.py::TestPRM12Parser::test_dihedral_atoms_bonded PASSED [ 90%] 680s testsuite/MDAnalysisTests/topology/test_top.py::TestPRM12Parser::test_improper_atoms_bonded PASSED [ 90%] 680s testsuite/MDAnalysisTests/topology/test_top.py::TestPRM12Parser::test_elements PASSED [ 90%] 681s testsuite/MDAnalysisTests/topology/test_top.py::TestParm7Parser::test_output PASSED [ 90%] 681s testsuite/MDAnalysisTests/topology/test_top.py::TestParm7Parser::test_mandatory_attributes PASSED [ 90%] 681s testsuite/MDAnalysisTests/topology/test_top.py::TestParm7Parser::test_expected_attributes PASSED [ 90%] 681s testsuite/MDAnalysisTests/topology/test_top.py::TestParm7Parser::test_no_unexpected_attributes PASSED [ 90%] 681s testsuite/MDAnalysisTests/topology/test_top.py::TestParm7Parser::test_guessed_attributes PASSED [ 90%] 681s testsuite/MDAnalysisTests/topology/test_top.py::TestParm7Parser::test_size PASSED [ 90%] 681s testsuite/MDAnalysisTests/topology/test_top.py::TestParm7Parser::test_tt_size PASSED [ 90%] 681s testsuite/MDAnalysisTests/topology/test_top.py::TestParm7Parser::test_creates_universe PASSED [ 90%] 681s testsuite/MDAnalysisTests/topology/test_top.py::TestParm7Parser::test_attr_size PASSED [ 90%] 681s testsuite/MDAnalysisTests/topology/test_top.py::TestParm7Parser::test_bonds_atom_counts PASSED [ 90%] 681s testsuite/MDAnalysisTests/topology/test_top.py::TestParm7Parser::test_angles_atom_counts PASSED [ 90%] 681s testsuite/MDAnalysisTests/topology/test_top.py::TestParm7Parser::test_dihedrals_atom_counts PASSED [ 90%] 681s testsuite/MDAnalysisTests/topology/test_top.py::TestParm7Parser::test_impropers_atom_counts PASSED [ 90%] 681s testsuite/MDAnalysisTests/topology/test_top.py::TestParm7Parser::test_bonds_identity PASSED [ 90%] 681s testsuite/MDAnalysisTests/topology/test_top.py::TestParm7Parser::test_angles_identity PASSED [ 90%] 681s testsuite/MDAnalysisTests/topology/test_top.py::TestParm7Parser::test_dihedrals_identity PASSED [ 90%] 681s testsuite/MDAnalysisTests/topology/test_top.py::TestParm7Parser::test_impropers_identity PASSED [ 90%] 681s testsuite/MDAnalysisTests/topology/test_top.py::TestParm7Parser::test_angle_atoms_bonded PASSED [ 90%] 682s testsuite/MDAnalysisTests/topology/test_top.py::TestParm7Parser::test_dihedral_atoms_bonded PASSED [ 90%] 682s testsuite/MDAnalysisTests/topology/test_top.py::TestParm7Parser::test_improper_atoms_bonded PASSED [ 90%] 682s testsuite/MDAnalysisTests/topology/test_top.py::TestParm7Parser::test_elements PASSED [ 90%] 682s testsuite/MDAnalysisTests/topology/test_top.py::TestPRM2::test_output PASSED [ 90%] 682s testsuite/MDAnalysisTests/topology/test_top.py::TestPRM2::test_mandatory_attributes PASSED [ 90%] 682s testsuite/MDAnalysisTests/topology/test_top.py::TestPRM2::test_expected_attributes PASSED [ 90%] 682s testsuite/MDAnalysisTests/topology/test_top.py::TestPRM2::test_no_unexpected_attributes PASSED [ 90%] 682s testsuite/MDAnalysisTests/topology/test_top.py::TestPRM2::test_guessed_attributes PASSED [ 90%] 682s testsuite/MDAnalysisTests/topology/test_top.py::TestPRM2::test_size PASSED [ 90%] 682s testsuite/MDAnalysisTests/topology/test_top.py::TestPRM2::test_tt_size PASSED [ 90%] 682s testsuite/MDAnalysisTests/topology/test_top.py::TestPRM2::test_creates_universe PASSED [ 90%] 682s testsuite/MDAnalysisTests/topology/test_top.py::TestPRM2::test_attr_size PASSED [ 90%] 682s testsuite/MDAnalysisTests/topology/test_top.py::TestPRM2::test_bonds_atom_counts PASSED [ 90%] 682s testsuite/MDAnalysisTests/topology/test_top.py::TestPRM2::test_angles_atom_counts PASSED [ 90%] 682s testsuite/MDAnalysisTests/topology/test_top.py::TestPRM2::test_dihedrals_atom_counts PASSED [ 90%] 682s testsuite/MDAnalysisTests/topology/test_top.py::TestPRM2::test_impropers_atom_counts PASSED [ 90%] 682s testsuite/MDAnalysisTests/topology/test_top.py::TestPRM2::test_bonds_identity PASSED [ 90%] 682s testsuite/MDAnalysisTests/topology/test_top.py::TestPRM2::test_angles_identity PASSED [ 90%] 682s testsuite/MDAnalysisTests/topology/test_top.py::TestPRM2::test_dihedrals_identity PASSED [ 90%] 682s testsuite/MDAnalysisTests/topology/test_top.py::TestPRM2::test_impropers_identity PASSED [ 90%] 682s testsuite/MDAnalysisTests/topology/test_top.py::TestPRM2::test_angle_atoms_bonded PASSED [ 90%] 682s testsuite/MDAnalysisTests/topology/test_top.py::TestPRM2::test_dihedral_atoms_bonded PASSED [ 90%] 682s testsuite/MDAnalysisTests/topology/test_top.py::TestPRM2::test_improper_atoms_bonded PASSED [ 90%] 682s testsuite/MDAnalysisTests/topology/test_top.py::TestPRM2::test_elements PASSED [ 90%] 682s testsuite/MDAnalysisTests/topology/test_top.py::TestPRMNCRST::test_output PASSED [ 90%] 682s testsuite/MDAnalysisTests/topology/test_top.py::TestPRMNCRST::test_mandatory_attributes PASSED [ 90%] 682s testsuite/MDAnalysisTests/topology/test_top.py::TestPRMNCRST::test_expected_attributes PASSED [ 90%] 682s testsuite/MDAnalysisTests/topology/test_top.py::TestPRMNCRST::test_no_unexpected_attributes PASSED [ 90%] 682s testsuite/MDAnalysisTests/topology/test_top.py::TestPRMNCRST::test_guessed_attributes PASSED [ 90%] 682s testsuite/MDAnalysisTests/topology/test_top.py::TestPRMNCRST::test_size PASSED [ 90%] 682s testsuite/MDAnalysisTests/topology/test_top.py::TestPRMNCRST::test_tt_size PASSED [ 90%] 682s testsuite/MDAnalysisTests/topology/test_top.py::TestPRMNCRST::test_creates_universe PASSED [ 90%] 682s testsuite/MDAnalysisTests/topology/test_top.py::TestPRMNCRST::test_attr_size PASSED [ 90%] 682s testsuite/MDAnalysisTests/topology/test_top.py::TestPRMNCRST::test_bonds_atom_counts PASSED [ 90%] 682s testsuite/MDAnalysisTests/topology/test_top.py::TestPRMNCRST::test_angles_atom_counts PASSED [ 90%] 682s testsuite/MDAnalysisTests/topology/test_top.py::TestPRMNCRST::test_dihedrals_atom_counts PASSED [ 90%] 682s testsuite/MDAnalysisTests/topology/test_top.py::TestPRMNCRST::test_impropers_atom_counts PASSED [ 90%] 682s testsuite/MDAnalysisTests/topology/test_top.py::TestPRMNCRST::test_bonds_identity PASSED [ 90%] 682s testsuite/MDAnalysisTests/topology/test_top.py::TestPRMNCRST::test_angles_identity PASSED [ 90%] 682s testsuite/MDAnalysisTests/topology/test_top.py::TestPRMNCRST::test_dihedrals_identity PASSED [ 90%] 682s testsuite/MDAnalysisTests/topology/test_top.py::TestPRMNCRST::test_impropers_identity PASSED [ 90%] 682s testsuite/MDAnalysisTests/topology/test_top.py::TestPRMNCRST::test_angle_atoms_bonded PASSED [ 90%] 682s testsuite/MDAnalysisTests/topology/test_top.py::TestPRMNCRST::test_dihedral_atoms_bonded PASSED [ 90%] 682s testsuite/MDAnalysisTests/topology/test_top.py::TestPRMNCRST::test_improper_atoms_bonded PASSED [ 90%] 682s testsuite/MDAnalysisTests/topology/test_top.py::TestPRMNCRST::test_elements PASSED [ 90%] 682s testsuite/MDAnalysisTests/topology/test_top.py::TestPRMNCRST_negative::test_output PASSED [ 90%] 682s testsuite/MDAnalysisTests/topology/test_top.py::TestPRMNCRST_negative::test_mandatory_attributes PASSED [ 90%] 682s testsuite/MDAnalysisTests/topology/test_top.py::TestPRMNCRST_negative::test_expected_attributes PASSED [ 90%] 682s testsuite/MDAnalysisTests/topology/test_top.py::TestPRMNCRST_negative::test_no_unexpected_attributes PASSED [ 90%] 682s testsuite/MDAnalysisTests/topology/test_top.py::TestPRMNCRST_negative::test_guessed_attributes PASSED [ 90%] 682s testsuite/MDAnalysisTests/topology/test_top.py::TestPRMNCRST_negative::test_size PASSED [ 90%] 682s testsuite/MDAnalysisTests/topology/test_top.py::TestPRMNCRST_negative::test_tt_size PASSED [ 90%] 682s testsuite/MDAnalysisTests/topology/test_top.py::TestPRMNCRST_negative::test_creates_universe PASSED [ 90%] 682s testsuite/MDAnalysisTests/topology/test_top.py::TestPRMNCRST_negative::test_attr_size PASSED [ 90%] 682s testsuite/MDAnalysisTests/topology/test_top.py::TestPRMNCRST_negative::test_bonds_atom_counts PASSED [ 90%] 682s testsuite/MDAnalysisTests/topology/test_top.py::TestPRMNCRST_negative::test_angles_atom_counts PASSED [ 90%] 682s testsuite/MDAnalysisTests/topology/test_top.py::TestPRMNCRST_negative::test_dihedrals_atom_counts PASSED [ 90%] 682s testsuite/MDAnalysisTests/topology/test_top.py::TestPRMNCRST_negative::test_impropers_atom_counts PASSED [ 90%] 682s testsuite/MDAnalysisTests/topology/test_top.py::TestPRMNCRST_negative::test_bonds_identity PASSED [ 90%] 682s testsuite/MDAnalysisTests/topology/test_top.py::TestPRMNCRST_negative::test_angles_identity PASSED [ 90%] 682s testsuite/MDAnalysisTests/topology/test_top.py::TestPRMNCRST_negative::test_dihedrals_identity PASSED [ 90%] 682s testsuite/MDAnalysisTests/topology/test_top.py::TestPRMNCRST_negative::test_impropers_identity PASSED [ 90%] 682s testsuite/MDAnalysisTests/topology/test_top.py::TestPRMNCRST_negative::test_angle_atoms_bonded PASSED [ 90%] 682s testsuite/MDAnalysisTests/topology/test_top.py::TestPRMNCRST_negative::test_dihedral_atoms_bonded PASSED [ 90%] 682s testsuite/MDAnalysisTests/topology/test_top.py::TestPRMNCRST_negative::test_improper_atoms_bonded PASSED [ 90%] 682s testsuite/MDAnalysisTests/topology/test_top.py::TestPRMNCRST_negative::test_elements PASSED [ 90%] 682s testsuite/MDAnalysisTests/topology/test_top.py::TestPRMEP::test_output PASSED [ 90%] 682s testsuite/MDAnalysisTests/topology/test_top.py::TestPRMEP::test_mandatory_attributes PASSED [ 90%] 682s testsuite/MDAnalysisTests/topology/test_top.py::TestPRMEP::test_expected_attributes PASSED [ 90%] 682s testsuite/MDAnalysisTests/topology/test_top.py::TestPRMEP::test_no_unexpected_attributes PASSED [ 90%] 682s testsuite/MDAnalysisTests/topology/test_top.py::TestPRMEP::test_guessed_attributes PASSED [ 90%] 682s testsuite/MDAnalysisTests/topology/test_top.py::TestPRMEP::test_size PASSED [ 90%] 682s testsuite/MDAnalysisTests/topology/test_top.py::TestPRMEP::test_tt_size PASSED [ 90%] 682s testsuite/MDAnalysisTests/topology/test_top.py::TestPRMEP::test_creates_universe PASSED [ 90%] 682s testsuite/MDAnalysisTests/topology/test_top.py::TestPRMEP::test_attr_size PASSED [ 90%] 682s testsuite/MDAnalysisTests/topology/test_top.py::TestPRMEP::test_bonds_atom_counts PASSED [ 90%] 682s testsuite/MDAnalysisTests/topology/test_top.py::TestPRMEP::test_angles_atom_counts PASSED [ 90%] 682s testsuite/MDAnalysisTests/topology/test_top.py::TestPRMEP::test_dihedrals_atom_counts PASSED [ 90%] 682s testsuite/MDAnalysisTests/topology/test_top.py::TestPRMEP::test_impropers_atom_counts PASSED [ 90%] 682s testsuite/MDAnalysisTests/topology/test_top.py::TestPRMEP::test_bonds_identity PASSED [ 90%] 682s testsuite/MDAnalysisTests/topology/test_top.py::TestPRMEP::test_angles_identity PASSED [ 90%] 682s testsuite/MDAnalysisTests/topology/test_top.py::TestPRMEP::test_dihedrals_identity PASSED [ 90%] 682s testsuite/MDAnalysisTests/topology/test_top.py::TestPRMEP::test_impropers_identity PASSED [ 90%] 682s testsuite/MDAnalysisTests/topology/test_top.py::TestPRMEP::test_angle_atoms_bonded PASSED [ 90%] 682s testsuite/MDAnalysisTests/topology/test_top.py::TestPRMEP::test_dihedral_atoms_bonded PASSED [ 90%] 682s testsuite/MDAnalysisTests/topology/test_top.py::TestPRMEP::test_improper_atoms_bonded PASSED [ 90%] 682s testsuite/MDAnalysisTests/topology/test_top.py::TestPRMEP::test_elements PASSED [ 90%] 682s testsuite/MDAnalysisTests/topology/test_top.py::TestErrorsAndWarnings::test_value_errors[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/Amber/ace_mbondi3.error1.parm7-%VE Missing in header] PASSED [ 90%] 682s testsuite/MDAnalysisTests/topology/test_top.py::TestErrorsAndWarnings::test_value_errors[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/Amber/ace_mbondi3.error2.parm7-'TITLE' missing in header] PASSED [ 90%] 682s testsuite/MDAnalysisTests/topology/test_top.py::TestErrorsAndWarnings::test_value_errors[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/Amber/ace_mbondi3.error4.parm7-Invalid header line.] PASSED [ 90%] 682s testsuite/MDAnalysisTests/topology/test_top.py::TestErrorsAndWarnings::test_value_errors[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/Amber/parmed_fad.prmtop-Chamber-style TOP file] PASSED [ 90%] 682s testsuite/MDAnalysisTests/topology/test_top.py::TestErrorsAndWarnings::test_flag_index_error PASSED [ 90%] 682s testsuite/MDAnalysisTests/topology/test_top.py::TestErrorsAndWarnings::test_warning[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/Amber/ache.prmtop-errmsgs0] PASSED [ 90%] 682s testsuite/MDAnalysisTests/topology/test_top.py::TestErrorsAndWarnings::test_warning[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/Amber/tz2.truncoct.parm7.bz2-errmsgs1] PASSED [ 90%] 682s testsuite/MDAnalysisTests/topology/test_top.py::TestErrorsAndWarnings::test_warning[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/Amber/capped-ala.prmtop-errmsgs2] PASSED [ 90%] 682s testsuite/MDAnalysisTests/topology/test_top.py::TestErrorsAndWarnings::test_warning[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/Amber/ace_mbondi3.negative.parm7-errmsgs3] PASSED [ 90%] 682s testsuite/MDAnalysisTests/topology/test_top.py::TestErrorsAndWarnings::test_warning[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/Amber/ala.ff19SB.OPC.parm7.bz2-errmsgs4] PASSED [ 90%] 682s testsuite/MDAnalysisTests/topology/test_top.py::TestErrorsAndWarnings::test_warning[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/Amber/ache_chainid.error5.prmtop.bz2-errmsgs5] PASSED [ 90%] 682s testsuite/MDAnalysisTests/topology/test_topology_base.py::TestSquash::test_squash PASSED [ 90%] 682s testsuite/MDAnalysisTests/topology/test_topology_base.py::TestChangeSquash::test_resid_squash PASSED [ 90%] 682s testsuite/MDAnalysisTests/topology/test_topology_base.py::TestChangeSquash::test_segid_squash PASSED [ 90%] 682s testsuite/MDAnalysisTests/topology/test_topology_str_types.py::test_str_types[CONFIG-/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/dlpoly/CONFIG_minimal-name] PASSED [ 90%] 682s testsuite/MDAnalysisTests/topology/test_topology_str_types.py::test_str_types[CONFIG-/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/dlpoly/CONFIG_minimal-resname] PASSED [ 90%] 682s testsuite/MDAnalysisTests/topology/test_topology_str_types.py::test_str_types[CONFIG-/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/dlpoly/CONFIG_minimal-type] PASSED [ 90%] 682s testsuite/MDAnalysisTests/topology/test_topology_str_types.py::test_str_types[CONFIG-/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/dlpoly/CONFIG_minimal-segid] PASSED [ 90%] 682s testsuite/MDAnalysisTests/topology/test_topology_str_types.py::test_str_types[CONFIG-/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/dlpoly/CONFIG_minimal-moltype] PASSED [ 90%] 683s testsuite/MDAnalysisTests/topology/test_topology_str_types.py::test_str_types[CRD-/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/adk_open.crd-name] PASSED [ 90%] 683s testsuite/MDAnalysisTests/topology/test_topology_str_types.py::test_str_types[CRD-/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/adk_open.crd-resname] PASSED [ 90%] 683s testsuite/MDAnalysisTests/topology/test_topology_str_types.py::test_str_types[CRD-/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/adk_open.crd-type] PASSED [ 90%] 683s testsuite/MDAnalysisTests/topology/test_topology_str_types.py::test_str_types[CRD-/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/adk_open.crd-segid] PASSED [ 90%] 683s testsuite/MDAnalysisTests/topology/test_topology_str_types.py::test_str_types[CRD-/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/adk_open.crd-moltype] PASSED [ 90%] 683s testsuite/MDAnalysisTests/topology/test_topology_str_types.py::test_str_types[DATA-/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/lammps/datatest.data-name] PASSED [ 90%] 683s testsuite/MDAnalysisTests/topology/test_topology_str_types.py::test_str_types[DATA-/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/lammps/datatest.data-resname] PASSED [ 90%] 683s testsuite/MDAnalysisTests/topology/test_topology_str_types.py::test_str_types[DATA-/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/lammps/datatest.data-type] PASSED [ 90%] 684s testsuite/MDAnalysisTests/topology/test_topology_str_types.py::test_str_types[DATA-/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/lammps/datatest.data-segid] PASSED [ 90%] 684s testsuite/MDAnalysisTests/topology/test_topology_str_types.py::test_str_types[DATA-/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/lammps/datatest.data-moltype] PASSED [ 90%] 684s testsuite/MDAnalysisTests/topology/test_topology_str_types.py::test_str_types[DMS-/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/adk_closed.dms-name] PASSED [ 90%] 684s testsuite/MDAnalysisTests/topology/test_topology_str_types.py::test_str_types[DMS-/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/adk_closed.dms-resname] PASSED [ 90%] 684s testsuite/MDAnalysisTests/topology/test_topology_str_types.py::test_str_types[DMS-/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/adk_closed.dms-type] PASSED [ 90%] 684s testsuite/MDAnalysisTests/topology/test_topology_str_types.py::test_str_types[DMS-/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/adk_closed.dms-segid] PASSED [ 90%] 684s testsuite/MDAnalysisTests/topology/test_topology_str_types.py::test_str_types[DMS-/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/adk_closed.dms-moltype] PASSED [ 90%] 684s testsuite/MDAnalysisTests/topology/test_topology_str_types.py::test_str_types[GMS-/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/gms/symopt.gms-name] PASSED [ 90%] 684s testsuite/MDAnalysisTests/topology/test_topology_str_types.py::test_str_types[GMS-/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/gms/symopt.gms-resname] PASSED [ 90%] 684s testsuite/MDAnalysisTests/topology/test_topology_str_types.py::test_str_types[GMS-/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/gms/symopt.gms-type] PASSED [ 90%] 684s testsuite/MDAnalysisTests/topology/test_topology_str_types.py::test_str_types[GMS-/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/gms/symopt.gms-segid] PASSED [ 90%] 684s testsuite/MDAnalysisTests/topology/test_topology_str_types.py::test_str_types[GMS-/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/gms/symopt.gms-moltype] PASSED [ 90%] 685s testsuite/MDAnalysisTests/topology/test_topology_str_types.py::test_str_types[GRO-/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/adk_oplsaa.gro-name] PASSED [ 90%] 685s testsuite/MDAnalysisTests/topology/test_topology_str_types.py::test_str_types[GRO-/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/adk_oplsaa.gro-resname] PASSED [ 90%] 685s testsuite/MDAnalysisTests/topology/test_topology_str_types.py::test_str_types[GRO-/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/adk_oplsaa.gro-type] PASSED [ 90%] 686s testsuite/MDAnalysisTests/topology/test_topology_str_types.py::test_str_types[GRO-/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/adk_oplsaa.gro-segid] PASSED [ 90%] 686s testsuite/MDAnalysisTests/topology/test_topology_str_types.py::test_str_types[GRO-/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/adk_oplsaa.gro-moltype] PASSED [ 90%] 686s testsuite/MDAnalysisTests/topology/test_topology_str_types.py::test_str_types[HISTORY-/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/dlpoly/HISTORY_minimal-name] PASSED [ 90%] 686s testsuite/MDAnalysisTests/topology/test_topology_str_types.py::test_str_types[HISTORY-/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/dlpoly/HISTORY_minimal-resname] PASSED [ 90%] 686s testsuite/MDAnalysisTests/topology/test_topology_str_types.py::test_str_types[HISTORY-/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/dlpoly/HISTORY_minimal-type] PASSED [ 90%] 686s testsuite/MDAnalysisTests/topology/test_topology_str_types.py::test_str_types[HISTORY-/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/dlpoly/HISTORY_minimal-segid] PASSED [ 90%] 686s testsuite/MDAnalysisTests/topology/test_topology_str_types.py::test_str_types[HISTORY-/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/dlpoly/HISTORY_minimal-moltype] PASSED [ 90%] 686s testsuite/MDAnalysisTests/topology/test_topology_str_types.py::test_str_types[MMTF-/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/173D.mmtf-name] PASSED [ 90%] 686s testsuite/MDAnalysisTests/topology/test_topology_str_types.py::test_str_types[MMTF-/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/173D.mmtf-resname] PASSED [ 91%] 686s testsuite/MDAnalysisTests/topology/test_topology_str_types.py::test_str_types[MMTF-/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/173D.mmtf-type] PASSED [ 91%] 686s testsuite/MDAnalysisTests/topology/test_topology_str_types.py::test_str_types[MMTF-/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/173D.mmtf-segid] PASSED [ 91%] 686s testsuite/MDAnalysisTests/topology/test_topology_str_types.py::test_str_types[MMTF-/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/173D.mmtf-moltype] PASSED [ 91%] 686s testsuite/MDAnalysisTests/topology/test_topology_str_types.py::test_str_types[MOL2-/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/mol2/Molecule.mol2-name] PASSED [ 91%] 686s testsuite/MDAnalysisTests/topology/test_topology_str_types.py::test_str_types[MOL2-/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/mol2/Molecule.mol2-resname] PASSED [ 91%] 686s testsuite/MDAnalysisTests/topology/test_topology_str_types.py::test_str_types[MOL2-/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/mol2/Molecule.mol2-type] PASSED [ 91%] 686s testsuite/MDAnalysisTests/topology/test_topology_str_types.py::test_str_types[MOL2-/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/mol2/Molecule.mol2-segid] PASSED [ 91%] 686s testsuite/MDAnalysisTests/topology/test_topology_str_types.py::test_str_types[MOL2-/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/mol2/Molecule.mol2-moltype] PASSED [ 91%] 686s testsuite/MDAnalysisTests/topology/test_topology_str_types.py::test_str_types[PARM7-/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/Amber/tz2.truncoct.parm7.bz2-name] PASSED [ 91%] 686s testsuite/MDAnalysisTests/topology/test_topology_str_types.py::test_str_types[PARM7-/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/Amber/tz2.truncoct.parm7.bz2-resname] PASSED [ 91%] 687s testsuite/MDAnalysisTests/topology/test_topology_str_types.py::test_str_types[PARM7-/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/Amber/tz2.truncoct.parm7.bz2-type] PASSED [ 91%] 687s testsuite/MDAnalysisTests/topology/test_topology_str_types.py::test_str_types[PARM7-/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/Amber/tz2.truncoct.parm7.bz2-segid] PASSED [ 91%] 687s testsuite/MDAnalysisTests/topology/test_topology_str_types.py::test_str_types[PARM7-/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/Amber/tz2.truncoct.parm7.bz2-moltype] PASSED [ 91%] 687s testsuite/MDAnalysisTests/topology/test_topology_str_types.py::test_str_types[PDB-/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/adk_open.pdb-name] PASSED [ 91%] 687s testsuite/MDAnalysisTests/topology/test_topology_str_types.py::test_str_types[PDB-/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/adk_open.pdb-resname] PASSED [ 91%] 687s testsuite/MDAnalysisTests/topology/test_topology_str_types.py::test_str_types[PDB-/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/adk_open.pdb-type] PASSED [ 91%] 687s testsuite/MDAnalysisTests/topology/test_topology_str_types.py::test_str_types[PDB-/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/adk_open.pdb-segid] PASSED [ 91%] 687s testsuite/MDAnalysisTests/topology/test_topology_str_types.py::test_str_types[PDB-/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/adk_open.pdb-moltype] PASSED [ 91%] 687s testsuite/MDAnalysisTests/topology/test_topology_str_types.py::test_str_types[PDBQT-/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/pdbqt_inputpdbqt.pdbqt-name] PASSED [ 91%] 687s testsuite/MDAnalysisTests/topology/test_topology_str_types.py::test_str_types[PDBQT-/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/pdbqt_inputpdbqt.pdbqt-resname] PASSED [ 91%] 687s testsuite/MDAnalysisTests/topology/test_topology_str_types.py::test_str_types[PDBQT-/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/pdbqt_inputpdbqt.pdbqt-type] PASSED [ 91%] 687s testsuite/MDAnalysisTests/topology/test_topology_str_types.py::test_str_types[PDBQT-/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/pdbqt_inputpdbqt.pdbqt-segid] PASSED [ 91%] 687s testsuite/MDAnalysisTests/topology/test_topology_str_types.py::test_str_types[PDBQT-/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/pdbqt_inputpdbqt.pdbqt-moltype] PASSED [ 91%] 687s testsuite/MDAnalysisTests/topology/test_topology_str_types.py::test_str_types[PQR-/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/adk_open.pqr-name] PASSED [ 91%] 687s testsuite/MDAnalysisTests/topology/test_topology_str_types.py::test_str_types[PQR-/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/adk_open.pqr-resname] PASSED [ 91%] 688s testsuite/MDAnalysisTests/topology/test_topology_str_types.py::test_str_types[PQR-/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/adk_open.pqr-type] PASSED [ 91%] 688s testsuite/MDAnalysisTests/topology/test_topology_str_types.py::test_str_types[PQR-/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/adk_open.pqr-segid] PASSED [ 91%] 688s testsuite/MDAnalysisTests/topology/test_topology_str_types.py::test_str_types[PQR-/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/adk_open.pqr-moltype] PASSED [ 91%] 688s testsuite/MDAnalysisTests/topology/test_topology_str_types.py::test_str_types[PRMTOP-/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/Amber/ache.prmtop-name] PASSED [ 91%] 688s testsuite/MDAnalysisTests/topology/test_topology_str_types.py::test_str_types[PRMTOP-/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/Amber/ache.prmtop-resname] PASSED [ 91%] 688s testsuite/MDAnalysisTests/topology/test_topology_str_types.py::test_str_types[PRMTOP-/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/Amber/ache.prmtop-type] PASSED [ 91%] 688s testsuite/MDAnalysisTests/topology/test_topology_str_types.py::test_str_types[PRMTOP-/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/Amber/ache.prmtop-segid] PASSED [ 91%] 688s testsuite/MDAnalysisTests/topology/test_topology_str_types.py::test_str_types[PRMTOP-/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/Amber/ache.prmtop-moltype] PASSED [ 91%] 688s testsuite/MDAnalysisTests/topology/test_topology_str_types.py::test_str_types[PSF-/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/adk.psf-name] PASSED [ 91%] 688s testsuite/MDAnalysisTests/topology/test_topology_str_types.py::test_str_types[PSF-/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/adk.psf-resname] PASSED [ 91%] 688s testsuite/MDAnalysisTests/topology/test_topology_str_types.py::test_str_types[PSF-/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/adk.psf-type] PASSED [ 91%] 688s testsuite/MDAnalysisTests/topology/test_topology_str_types.py::test_str_types[PSF-/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/adk.psf-segid] PASSED [ 91%] 688s testsuite/MDAnalysisTests/topology/test_topology_str_types.py::test_str_types[PSF-/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/adk.psf-moltype] PASSED [ 91%] 688s testsuite/MDAnalysisTests/topology/test_topology_str_types.py::test_str_types[TOP-/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/Amber/anti.top-name] PASSED [ 91%] 688s testsuite/MDAnalysisTests/topology/test_topology_str_types.py::test_str_types[TOP-/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/Amber/anti.top-resname] PASSED [ 91%] 688s testsuite/MDAnalysisTests/topology/test_topology_str_types.py::test_str_types[TOP-/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/Amber/anti.top-type] PASSED [ 91%] 688s testsuite/MDAnalysisTests/topology/test_topology_str_types.py::test_str_types[TOP-/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/Amber/anti.top-segid] PASSED [ 91%] 688s testsuite/MDAnalysisTests/topology/test_topology_str_types.py::test_str_types[TOP-/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/Amber/anti.top-moltype] PASSED [ 91%] 689s testsuite/MDAnalysisTests/topology/test_topology_str_types.py::test_str_types[TPR-/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/adk_oplsaa.tpr-name] PASSED [ 91%] 689s testsuite/MDAnalysisTests/topology/test_topology_str_types.py::test_str_types[TPR-/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/adk_oplsaa.tpr-resname] PASSED [ 91%] 689s testsuite/MDAnalysisTests/topology/test_topology_str_types.py::test_str_types[TPR-/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/adk_oplsaa.tpr-type] PASSED [ 91%] 689s testsuite/MDAnalysisTests/topology/test_topology_str_types.py::test_str_types[TPR-/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/adk_oplsaa.tpr-segid] PASSED [ 91%] 690s testsuite/MDAnalysisTests/topology/test_topology_str_types.py::test_str_types[TPR-/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/adk_oplsaa.tpr-moltype] PASSED [ 91%] 690s testsuite/MDAnalysisTests/topology/test_topology_str_types.py::test_str_types[XML-/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/C12x64.xml.bz2-name] PASSED [ 91%] 690s testsuite/MDAnalysisTests/topology/test_topology_str_types.py::test_str_types[XML-/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/C12x64.xml.bz2-resname] PASSED [ 91%] 690s testsuite/MDAnalysisTests/topology/test_topology_str_types.py::test_str_types[XML-/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/C12x64.xml.bz2-type] PASSED [ 91%] 690s testsuite/MDAnalysisTests/topology/test_topology_str_types.py::test_str_types[XML-/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/C12x64.xml.bz2-segid] PASSED [ 91%] 690s testsuite/MDAnalysisTests/topology/test_topology_str_types.py::test_str_types[XML-/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/C12x64.xml.bz2-moltype] PASSED [ 91%] 690s testsuite/MDAnalysisTests/topology/test_topology_str_types.py::test_str_types[XPDB-/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/5digitResid.pdb-name] PASSED [ 91%] 690s testsuite/MDAnalysisTests/topology/test_topology_str_types.py::test_str_types[XPDB-/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/5digitResid.pdb-resname] PASSED [ 91%] 690s testsuite/MDAnalysisTests/topology/test_topology_str_types.py::test_str_types[XPDB-/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/5digitResid.pdb-type] PASSED [ 91%] 690s testsuite/MDAnalysisTests/topology/test_topology_str_types.py::test_str_types[XPDB-/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/5digitResid.pdb-segid] PASSED [ 91%] 690s testsuite/MDAnalysisTests/topology/test_topology_str_types.py::test_str_types[XPDB-/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/5digitResid.pdb-moltype] PASSED [ 91%] 690s testsuite/MDAnalysisTests/topology/test_topology_str_types.py::test_str_types[XYZ-/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/mini.xyz-name] PASSED [ 91%] 690s testsuite/MDAnalysisTests/topology/test_topology_str_types.py::test_str_types[XYZ-/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/mini.xyz-resname] PASSED [ 91%] 690s testsuite/MDAnalysisTests/topology/test_topology_str_types.py::test_str_types[XYZ-/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/mini.xyz-type] PASSED [ 91%] 690s testsuite/MDAnalysisTests/topology/test_topology_str_types.py::test_str_types[XYZ-/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/mini.xyz-segid] PASSED [ 91%] 690s testsuite/MDAnalysisTests/topology/test_topology_str_types.py::test_str_types[XYZ-/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/mini.xyz-moltype] PASSED [ 91%] 690s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPR::test_output PASSED [ 91%] 690s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPR::test_mandatory_attributes PASSED [ 91%] 691s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPR::test_expected_attributes PASSED [ 91%] 691s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPR::test_no_unexpected_attributes PASSED [ 91%] 691s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPR::test_guessed_attributes PASSED [ 91%] 692s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPR::test_size PASSED [ 91%] 692s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPR::test_tt_size PASSED [ 91%] 692s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPR::test_creates_universe PASSED [ 91%] 692s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPR::test_moltypes PASSED [ 91%] 693s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPR::test_molnums PASSED [ 91%] 693s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPR::test_chainIDs PASSED [ 91%] 693s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRGromacsVersions::test_output[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_4.0.tpr] PASSED [ 91%] 693s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRGromacsVersions::test_output[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_4.0.2.tpr] PASSED [ 91%] 693s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRGromacsVersions::test_output[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_4.0.3.tpr] PASSED [ 91%] 693s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRGromacsVersions::test_output[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_4.0.4.tpr] PASSED [ 91%] 694s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRGromacsVersions::test_output[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_4.0.5.tpr] PASSED [ 91%] 694s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRGromacsVersions::test_output[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_4.0.6.tpr] PASSED [ 91%] 694s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRGromacsVersions::test_output[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_4.0.7.tpr] PASSED [ 91%] 694s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRGromacsVersions::test_output[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_4.5.tpr] PASSED [ 91%] 694s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRGromacsVersions::test_output[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_4.5.1.tpr] PASSED [ 91%] 694s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRGromacsVersions::test_output[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_4.5.2.tpr] PASSED [ 91%] 694s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRGromacsVersions::test_output[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_4.5.3.tpr] PASSED [ 91%] 694s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRGromacsVersions::test_output[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_4.5.4.tpr] PASSED [ 91%] 694s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRGromacsVersions::test_output[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_4.5.5.tpr] PASSED [ 91%] 694s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRGromacsVersions::test_output[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_5.0.2.tpr] PASSED [ 91%] 695s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRGromacsVersions::test_output[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_5.0.4.tpr] PASSED [ 91%] 695s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRGromacsVersions::test_output[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_5.0.5.tpr] PASSED [ 91%] 695s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRGromacsVersions::test_output[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_5.1.tpr] PASSED [ 91%] 695s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRGromacsVersions::test_output[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_2016.tpr] PASSED [ 91%] 695s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRGromacsVersions::test_output[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_2018.tpr] PASSED [ 91%] 695s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRGromacsVersions::test_output[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_2019-beta3.tpr] PASSED [ 91%] 695s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRGromacsVersions::test_output[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_2020.tpr] PASSED [ 91%] 695s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRGromacsVersions::test_output[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_2020_double.tpr] PASSED [ 91%] 695s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRGromacsVersions::test_output[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_2021.tpr] PASSED [ 91%] 695s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRGromacsVersions::test_output[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_2021_double.tpr] PASSED [ 91%] 695s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRGromacsVersions::test_output[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_2022-rc1.tpr] PASSED [ 91%] 695s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRGromacsVersions::test_output[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_2023.tpr] PASSED [ 91%] 695s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRGromacsVersions::test_mandatory_attributes[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_4.0.tpr] PASSED [ 91%] 695s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRGromacsVersions::test_mandatory_attributes[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_4.0.2.tpr] PASSED [ 91%] 696s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRGromacsVersions::test_mandatory_attributes[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_4.0.3.tpr] PASSED [ 91%] 696s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRGromacsVersions::test_mandatory_attributes[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_4.0.4.tpr] PASSED [ 91%] 696s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRGromacsVersions::test_mandatory_attributes[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_4.0.5.tpr] PASSED [ 91%] 696s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRGromacsVersions::test_mandatory_attributes[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_4.0.6.tpr] PASSED [ 91%] 696s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRGromacsVersions::test_mandatory_attributes[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_4.0.7.tpr] PASSED [ 91%] 696s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRGromacsVersions::test_mandatory_attributes[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_4.5.tpr] PASSED [ 91%] 696s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRGromacsVersions::test_mandatory_attributes[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_4.5.1.tpr] PASSED [ 91%] 696s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRGromacsVersions::test_mandatory_attributes[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_4.5.2.tpr] PASSED [ 91%] 696s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRGromacsVersions::test_mandatory_attributes[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_4.5.3.tpr] PASSED [ 91%] 696s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRGromacsVersions::test_mandatory_attributes[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_4.5.4.tpr] PASSED [ 91%] 697s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRGromacsVersions::test_mandatory_attributes[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_4.5.5.tpr] PASSED [ 91%] 697s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRGromacsVersions::test_mandatory_attributes[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_5.0.2.tpr] PASSED [ 91%] 697s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRGromacsVersions::test_mandatory_attributes[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_5.0.4.tpr] PASSED [ 91%] 697s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRGromacsVersions::test_mandatory_attributes[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_5.0.5.tpr] PASSED [ 91%] 697s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRGromacsVersions::test_mandatory_attributes[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_5.1.tpr] PASSED [ 91%] 697s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRGromacsVersions::test_mandatory_attributes[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_2016.tpr] PASSED [ 91%] 697s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRGromacsVersions::test_mandatory_attributes[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_2018.tpr] PASSED [ 91%] 697s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRGromacsVersions::test_mandatory_attributes[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_2019-beta3.tpr] PASSED [ 91%] 697s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRGromacsVersions::test_mandatory_attributes[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_2020.tpr] PASSED [ 91%] 697s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRGromacsVersions::test_mandatory_attributes[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_2020_double.tpr] PASSED [ 91%] 698s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRGromacsVersions::test_mandatory_attributes[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_2021.tpr] PASSED [ 91%] 698s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRGromacsVersions::test_mandatory_attributes[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_2021_double.tpr] PASSED [ 91%] 698s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRGromacsVersions::test_mandatory_attributes[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_2022-rc1.tpr] PASSED [ 91%] 698s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRGromacsVersions::test_mandatory_attributes[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_2023.tpr] PASSED [ 91%] 698s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRGromacsVersions::test_expected_attributes[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_4.0.tpr] PASSED [ 91%] 698s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRGromacsVersions::test_expected_attributes[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_4.0.2.tpr] PASSED [ 91%] 698s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRGromacsVersions::test_expected_attributes[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_4.0.3.tpr] PASSED [ 91%] 698s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRGromacsVersions::test_expected_attributes[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_4.0.4.tpr] PASSED [ 91%] 698s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRGromacsVersions::test_expected_attributes[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_4.0.5.tpr] PASSED [ 91%] 699s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRGromacsVersions::test_expected_attributes[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_4.0.6.tpr] PASSED [ 91%] 699s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRGromacsVersions::test_expected_attributes[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_4.0.7.tpr] PASSED [ 91%] 699s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRGromacsVersions::test_expected_attributes[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_4.5.tpr] PASSED [ 91%] 699s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRGromacsVersions::test_expected_attributes[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_4.5.1.tpr] PASSED [ 91%] 699s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRGromacsVersions::test_expected_attributes[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_4.5.2.tpr] PASSED [ 91%] 699s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRGromacsVersions::test_expected_attributes[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_4.5.3.tpr] PASSED [ 91%] 699s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRGromacsVersions::test_expected_attributes[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_4.5.4.tpr] PASSED [ 91%] 699s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRGromacsVersions::test_expected_attributes[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_4.5.5.tpr] PASSED [ 91%] 699s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRGromacsVersions::test_expected_attributes[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_5.0.2.tpr] PASSED [ 91%] 699s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRGromacsVersions::test_expected_attributes[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_5.0.4.tpr] PASSED [ 91%] 699s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRGromacsVersions::test_expected_attributes[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_5.0.5.tpr] PASSED [ 91%] 699s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRGromacsVersions::test_expected_attributes[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_5.1.tpr] PASSED [ 91%] 699s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRGromacsVersions::test_expected_attributes[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_2016.tpr] PASSED [ 91%] 699s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRGromacsVersions::test_expected_attributes[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_2018.tpr] PASSED [ 91%] 699s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRGromacsVersions::test_expected_attributes[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_2019-beta3.tpr] PASSED [ 91%] 700s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRGromacsVersions::test_expected_attributes[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_2020.tpr] PASSED [ 91%] 700s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRGromacsVersions::test_expected_attributes[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_2020_double.tpr] PASSED [ 91%] 700s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRGromacsVersions::test_expected_attributes[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_2021.tpr] PASSED [ 91%] 700s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRGromacsVersions::test_expected_attributes[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_2021_double.tpr] PASSED [ 91%] 700s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRGromacsVersions::test_expected_attributes[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_2022-rc1.tpr] PASSED [ 91%] 700s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRGromacsVersions::test_expected_attributes[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_2023.tpr] PASSED [ 91%] 700s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRGromacsVersions::test_no_unexpected_attributes[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_4.0.tpr] PASSED [ 91%] 700s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRGromacsVersions::test_no_unexpected_attributes[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_4.0.2.tpr] PASSED [ 91%] 700s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRGromacsVersions::test_no_unexpected_attributes[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_4.0.3.tpr] PASSED [ 91%] 701s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRGromacsVersions::test_no_unexpected_attributes[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_4.0.4.tpr] PASSED [ 91%] 701s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRGromacsVersions::test_no_unexpected_attributes[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_4.0.5.tpr] PASSED [ 91%] 701s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRGromacsVersions::test_no_unexpected_attributes[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_4.0.6.tpr] PASSED [ 91%] 701s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRGromacsVersions::test_no_unexpected_attributes[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_4.0.7.tpr] PASSED [ 91%] 701s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRGromacsVersions::test_no_unexpected_attributes[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_4.5.tpr] PASSED [ 91%] 701s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRGromacsVersions::test_no_unexpected_attributes[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_4.5.1.tpr] PASSED [ 91%] 701s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRGromacsVersions::test_no_unexpected_attributes[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_4.5.2.tpr] PASSED [ 91%] 701s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRGromacsVersions::test_no_unexpected_attributes[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_4.5.3.tpr] PASSED [ 91%] 701s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRGromacsVersions::test_no_unexpected_attributes[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_4.5.4.tpr] PASSED [ 91%] 701s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRGromacsVersions::test_no_unexpected_attributes[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_4.5.5.tpr] PASSED [ 91%] 701s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRGromacsVersions::test_no_unexpected_attributes[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_5.0.2.tpr] PASSED [ 91%] 702s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRGromacsVersions::test_no_unexpected_attributes[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_5.0.4.tpr] PASSED [ 91%] 702s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRGromacsVersions::test_no_unexpected_attributes[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_5.0.5.tpr] PASSED [ 91%] 702s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRGromacsVersions::test_no_unexpected_attributes[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_5.1.tpr] PASSED [ 91%] 702s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRGromacsVersions::test_no_unexpected_attributes[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_2016.tpr] PASSED [ 91%] 702s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRGromacsVersions::test_no_unexpected_attributes[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_2018.tpr] PASSED [ 91%] 702s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRGromacsVersions::test_no_unexpected_attributes[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_2019-beta3.tpr] PASSED [ 91%] 702s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRGromacsVersions::test_no_unexpected_attributes[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_2020.tpr] PASSED [ 91%] 702s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRGromacsVersions::test_no_unexpected_attributes[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_2020_double.tpr] PASSED [ 91%] 702s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRGromacsVersions::test_no_unexpected_attributes[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_2021.tpr] PASSED [ 91%] 702s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRGromacsVersions::test_no_unexpected_attributes[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_2021_double.tpr] PASSED [ 91%] 702s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRGromacsVersions::test_no_unexpected_attributes[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_2022-rc1.tpr] PASSED [ 91%] 703s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRGromacsVersions::test_no_unexpected_attributes[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_2023.tpr] PASSED [ 91%] 703s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRGromacsVersions::test_guessed_attributes[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_4.0.tpr] PASSED [ 91%] 703s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRGromacsVersions::test_guessed_attributes[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_4.0.2.tpr] PASSED [ 91%] 703s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRGromacsVersions::test_guessed_attributes[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_4.0.3.tpr] PASSED [ 91%] 703s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRGromacsVersions::test_guessed_attributes[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_4.0.4.tpr] PASSED [ 91%] 703s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRGromacsVersions::test_guessed_attributes[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_4.0.5.tpr] PASSED [ 91%] 703s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRGromacsVersions::test_guessed_attributes[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_4.0.6.tpr] PASSED [ 92%] 703s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRGromacsVersions::test_guessed_attributes[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_4.0.7.tpr] PASSED [ 92%] 703s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRGromacsVersions::test_guessed_attributes[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_4.5.tpr] PASSED [ 92%] 703s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRGromacsVersions::test_guessed_attributes[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_4.5.1.tpr] PASSED [ 92%] 703s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRGromacsVersions::test_guessed_attributes[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_4.5.2.tpr] PASSED [ 92%] 703s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRGromacsVersions::test_guessed_attributes[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_4.5.3.tpr] PASSED [ 92%] 703s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRGromacsVersions::test_guessed_attributes[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_4.5.4.tpr] PASSED [ 92%] 704s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRGromacsVersions::test_guessed_attributes[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_4.5.5.tpr] PASSED [ 92%] 704s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRGromacsVersions::test_guessed_attributes[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_5.0.2.tpr] PASSED [ 92%] 704s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRGromacsVersions::test_guessed_attributes[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_5.0.4.tpr] PASSED [ 92%] 704s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRGromacsVersions::test_guessed_attributes[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_5.0.5.tpr] PASSED [ 92%] 704s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRGromacsVersions::test_guessed_attributes[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_5.1.tpr] PASSED [ 92%] 704s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRGromacsVersions::test_guessed_attributes[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_2016.tpr] PASSED [ 92%] 704s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRGromacsVersions::test_guessed_attributes[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_2018.tpr] PASSED [ 92%] 704s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRGromacsVersions::test_guessed_attributes[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_2019-beta3.tpr] PASSED [ 92%] 704s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRGromacsVersions::test_guessed_attributes[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_2020.tpr] PASSED [ 92%] 704s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRGromacsVersions::test_guessed_attributes[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_2020_double.tpr] PASSED [ 92%] 704s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRGromacsVersions::test_guessed_attributes[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_2021.tpr] PASSED [ 92%] 704s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRGromacsVersions::test_guessed_attributes[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_2021_double.tpr] PASSED [ 92%] 704s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRGromacsVersions::test_guessed_attributes[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_2022-rc1.tpr] PASSED [ 92%] 705s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRGromacsVersions::test_guessed_attributes[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_2023.tpr] PASSED [ 92%] 705s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRGromacsVersions::test_size[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_4.0.tpr] PASSED [ 92%] 705s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRGromacsVersions::test_size[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_4.0.2.tpr] PASSED [ 92%] 705s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRGromacsVersions::test_size[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_4.0.3.tpr] PASSED [ 92%] 705s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRGromacsVersions::test_size[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_4.0.4.tpr] PASSED [ 92%] 705s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRGromacsVersions::test_size[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_4.0.5.tpr] PASSED [ 92%] 705s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRGromacsVersions::test_size[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_4.0.6.tpr] PASSED [ 92%] 705s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRGromacsVersions::test_size[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_4.0.7.tpr] PASSED [ 92%] 705s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRGromacsVersions::test_size[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_4.5.tpr] PASSED [ 92%] 705s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRGromacsVersions::test_size[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_4.5.1.tpr] PASSED [ 92%] 706s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRGromacsVersions::test_size[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_4.5.2.tpr] PASSED [ 92%] 706s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRGromacsVersions::test_size[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_4.5.3.tpr] PASSED [ 92%] 706s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRGromacsVersions::test_size[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_4.5.4.tpr] PASSED [ 92%] 706s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRGromacsVersions::test_size[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_4.5.5.tpr] PASSED [ 92%] 706s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRGromacsVersions::test_size[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_5.0.2.tpr] PASSED [ 92%] 706s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRGromacsVersions::test_size[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_5.0.4.tpr] PASSED [ 92%] 706s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRGromacsVersions::test_size[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_5.0.5.tpr] PASSED [ 92%] 706s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRGromacsVersions::test_size[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_5.1.tpr] PASSED [ 92%] 706s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRGromacsVersions::test_size[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_2016.tpr] PASSED [ 92%] 706s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRGromacsVersions::test_size[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_2018.tpr] PASSED [ 92%] 707s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRGromacsVersions::test_size[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_2019-beta3.tpr] PASSED [ 92%] 707s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRGromacsVersions::test_size[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_2020.tpr] PASSED [ 92%] 707s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRGromacsVersions::test_size[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_2020_double.tpr] PASSED [ 92%] 707s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRGromacsVersions::test_size[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_2021.tpr] PASSED [ 92%] 707s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRGromacsVersions::test_size[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_2021_double.tpr] PASSED [ 92%] 707s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRGromacsVersions::test_size[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_2022-rc1.tpr] PASSED [ 92%] 707s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRGromacsVersions::test_size[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_2023.tpr] PASSED [ 92%] 707s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRGromacsVersions::test_tt_size[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_4.0.tpr] PASSED [ 92%] 707s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRGromacsVersions::test_tt_size[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_4.0.2.tpr] PASSED [ 92%] 707s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRGromacsVersions::test_tt_size[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_4.0.3.tpr] PASSED [ 92%] 707s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRGromacsVersions::test_tt_size[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_4.0.4.tpr] PASSED [ 92%] 708s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRGromacsVersions::test_tt_size[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_4.0.5.tpr] PASSED [ 92%] 708s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRGromacsVersions::test_tt_size[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_4.0.6.tpr] PASSED [ 92%] 708s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRGromacsVersions::test_tt_size[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_4.0.7.tpr] PASSED [ 92%] 708s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRGromacsVersions::test_tt_size[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_4.5.tpr] PASSED [ 92%] 708s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRGromacsVersions::test_tt_size[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_4.5.1.tpr] PASSED [ 92%] 708s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRGromacsVersions::test_tt_size[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_4.5.2.tpr] PASSED [ 92%] 708s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRGromacsVersions::test_tt_size[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_4.5.3.tpr] PASSED [ 92%] 708s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRGromacsVersions::test_tt_size[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_4.5.4.tpr] PASSED [ 92%] 708s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRGromacsVersions::test_tt_size[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_4.5.5.tpr] PASSED [ 92%] 708s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRGromacsVersions::test_tt_size[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_5.0.2.tpr] PASSED [ 92%] 708s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRGromacsVersions::test_tt_size[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_5.0.4.tpr] PASSED [ 92%] 710s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRGromacsVersions::test_tt_size[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_5.0.5.tpr] PASSED [ 92%] 710s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRGromacsVersions::test_tt_size[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_5.1.tpr] PASSED [ 92%] 710s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRGromacsVersions::test_tt_size[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_2016.tpr] PASSED [ 92%] 710s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRGromacsVersions::test_tt_size[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_2018.tpr] PASSED [ 92%] 710s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRGromacsVersions::test_tt_size[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_2019-beta3.tpr] PASSED [ 92%] 710s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRGromacsVersions::test_tt_size[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_2020.tpr] PASSED [ 92%] 710s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRGromacsVersions::test_tt_size[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_2020_double.tpr] PASSED [ 92%] 710s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRGromacsVersions::test_tt_size[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_2021.tpr] PASSED [ 92%] 710s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRGromacsVersions::test_tt_size[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_2021_double.tpr] PASSED [ 92%] 710s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRGromacsVersions::test_tt_size[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_2022-rc1.tpr] PASSED [ 92%] 710s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRGromacsVersions::test_tt_size[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_2023.tpr] PASSED [ 92%] 710s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRGromacsVersions::test_creates_universe[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_4.0.tpr] PASSED [ 92%] 710s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRGromacsVersions::test_creates_universe[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_4.0.2.tpr] PASSED [ 92%] 710s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRGromacsVersions::test_creates_universe[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_4.0.3.tpr] PASSED [ 92%] 710s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRGromacsVersions::test_creates_universe[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_4.0.4.tpr] PASSED [ 92%] 710s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRGromacsVersions::test_creates_universe[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_4.0.5.tpr] PASSED [ 92%] 710s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRGromacsVersions::test_creates_universe[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_4.0.6.tpr] PASSED [ 92%] 710s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRGromacsVersions::test_creates_universe[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_4.0.7.tpr] PASSED [ 92%] 710s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRGromacsVersions::test_creates_universe[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_4.5.tpr] PASSED [ 92%] 710s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRGromacsVersions::test_creates_universe[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_4.5.1.tpr] PASSED [ 92%] 710s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRGromacsVersions::test_creates_universe[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_4.5.2.tpr] PASSED [ 92%] 710s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRGromacsVersions::test_creates_universe[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_4.5.3.tpr] PASSED [ 92%] 711s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRGromacsVersions::test_creates_universe[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_4.5.4.tpr] PASSED [ 92%] 711s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRGromacsVersions::test_creates_universe[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_4.5.5.tpr] PASSED [ 92%] 711s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRGromacsVersions::test_creates_universe[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_5.0.2.tpr] PASSED [ 92%] 711s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRGromacsVersions::test_creates_universe[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_5.0.4.tpr] PASSED [ 92%] 711s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRGromacsVersions::test_creates_universe[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_5.0.5.tpr] PASSED [ 92%] 711s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRGromacsVersions::test_creates_universe[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_5.1.tpr] PASSED [ 92%] 711s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRGromacsVersions::test_creates_universe[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_2016.tpr] PASSED [ 92%] 711s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRGromacsVersions::test_creates_universe[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_2018.tpr] PASSED [ 92%] 711s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRGromacsVersions::test_creates_universe[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_2019-beta3.tpr] PASSED [ 92%] 712s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRGromacsVersions::test_creates_universe[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_2020.tpr] PASSED [ 92%] 712s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRGromacsVersions::test_creates_universe[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_2020_double.tpr] PASSED [ 92%] 712s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRGromacsVersions::test_creates_universe[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_2021.tpr] PASSED [ 92%] 712s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRGromacsVersions::test_creates_universe[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_2021_double.tpr] PASSED [ 92%] 712s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRGromacsVersions::test_creates_universe[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_2022-rc1.tpr] PASSED [ 92%] 712s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRGromacsVersions::test_creates_universe[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_2023.tpr] PASSED [ 92%] 712s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRGromacsVersions::test_moltypes[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_4.0.tpr] PASSED [ 92%] 712s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRGromacsVersions::test_moltypes[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_4.0.2.tpr] PASSED [ 92%] 712s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRGromacsVersions::test_moltypes[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_4.0.3.tpr] PASSED [ 92%] 712s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRGromacsVersions::test_moltypes[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_4.0.4.tpr] PASSED [ 92%] 712s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRGromacsVersions::test_moltypes[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_4.0.5.tpr] PASSED [ 92%] 712s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRGromacsVersions::test_moltypes[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_4.0.6.tpr] PASSED [ 92%] 712s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRGromacsVersions::test_moltypes[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_4.0.7.tpr] PASSED [ 92%] 712s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRGromacsVersions::test_moltypes[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_4.5.tpr] PASSED [ 92%] 712s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRGromacsVersions::test_moltypes[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_4.5.1.tpr] PASSED [ 92%] 713s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRGromacsVersions::test_moltypes[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_4.5.2.tpr] PASSED [ 92%] 713s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRGromacsVersions::test_moltypes[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_4.5.3.tpr] PASSED [ 92%] 713s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRGromacsVersions::test_moltypes[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_4.5.4.tpr] PASSED [ 92%] 713s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRGromacsVersions::test_moltypes[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_4.5.5.tpr] PASSED [ 92%] 713s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRGromacsVersions::test_moltypes[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_5.0.2.tpr] PASSED [ 92%] 713s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRGromacsVersions::test_moltypes[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_5.0.4.tpr] PASSED [ 92%] 713s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRGromacsVersions::test_moltypes[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_5.0.5.tpr] PASSED [ 92%] 713s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRGromacsVersions::test_moltypes[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_5.1.tpr] PASSED [ 92%] 713s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRGromacsVersions::test_moltypes[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_2016.tpr] PASSED [ 92%] 714s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRGromacsVersions::test_moltypes[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_2018.tpr] PASSED [ 92%] 714s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRGromacsVersions::test_moltypes[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_2019-beta3.tpr] PASSED [ 92%] 714s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRGromacsVersions::test_moltypes[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_2020.tpr] PASSED [ 92%] 714s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRGromacsVersions::test_moltypes[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_2020_double.tpr] PASSED [ 92%] 714s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRGromacsVersions::test_moltypes[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_2021.tpr] PASSED [ 92%] 714s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRGromacsVersions::test_moltypes[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_2021_double.tpr] PASSED [ 92%] 716s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRGromacsVersions::test_moltypes[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_2022-rc1.tpr] PASSED [ 92%] 716s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRGromacsVersions::test_moltypes[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_2023.tpr] PASSED [ 92%] 716s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRGromacsVersions::test_molnums[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_4.0.tpr] PASSED [ 92%] 716s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRGromacsVersions::test_molnums[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_4.0.2.tpr] PASSED [ 92%] 716s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRGromacsVersions::test_molnums[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_4.0.3.tpr] PASSED [ 92%] 716s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRGromacsVersions::test_molnums[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_4.0.4.tpr] PASSED [ 92%] 716s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRGromacsVersions::test_molnums[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_4.0.5.tpr] PASSED [ 92%] 716s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRGromacsVersions::test_molnums[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_4.0.6.tpr] PASSED [ 92%] 716s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRGromacsVersions::test_molnums[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_4.0.7.tpr] PASSED [ 92%] 716s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRGromacsVersions::test_molnums[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_4.5.tpr] PASSED [ 92%] 716s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRGromacsVersions::test_molnums[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_4.5.1.tpr] PASSED [ 92%] 716s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRGromacsVersions::test_molnums[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_4.5.2.tpr] PASSED [ 92%] 716s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRGromacsVersions::test_molnums[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_4.5.3.tpr] PASSED [ 92%] 716s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRGromacsVersions::test_molnums[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_4.5.4.tpr] PASSED [ 92%] 716s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRGromacsVersions::test_molnums[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_4.5.5.tpr] PASSED [ 92%] 716s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRGromacsVersions::test_molnums[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_5.0.2.tpr] PASSED [ 92%] 716s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRGromacsVersions::test_molnums[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_5.0.4.tpr] PASSED [ 92%] 716s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRGromacsVersions::test_molnums[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_5.0.5.tpr] PASSED [ 92%] 716s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRGromacsVersions::test_molnums[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_5.1.tpr] PASSED [ 92%] 716s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRGromacsVersions::test_molnums[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_2016.tpr] PASSED [ 92%] 716s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRGromacsVersions::test_molnums[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_2018.tpr] PASSED [ 92%] 716s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRGromacsVersions::test_molnums[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_2019-beta3.tpr] PASSED [ 92%] 716s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRGromacsVersions::test_molnums[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_2020.tpr] PASSED [ 92%] 716s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRGromacsVersions::test_molnums[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_2020_double.tpr] PASSED [ 92%] 716s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRGromacsVersions::test_molnums[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_2021.tpr] PASSED [ 92%] 716s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRGromacsVersions::test_molnums[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_2021_double.tpr] PASSED [ 92%] 717s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRGromacsVersions::test_molnums[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_2022-rc1.tpr] PASSED [ 92%] 717s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRGromacsVersions::test_molnums[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_2023.tpr] PASSED [ 92%] 717s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRGromacsVersions::test_chainIDs[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_4.0.tpr] PASSED [ 92%] 717s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRGromacsVersions::test_chainIDs[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_4.0.2.tpr] PASSED [ 92%] 717s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRGromacsVersions::test_chainIDs[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_4.0.3.tpr] PASSED [ 92%] 717s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRGromacsVersions::test_chainIDs[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_4.0.4.tpr] PASSED [ 92%] 717s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRGromacsVersions::test_chainIDs[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_4.0.5.tpr] PASSED [ 92%] 717s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRGromacsVersions::test_chainIDs[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_4.0.6.tpr] PASSED [ 92%] 717s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRGromacsVersions::test_chainIDs[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_4.0.7.tpr] PASSED [ 92%] 717s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRGromacsVersions::test_chainIDs[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_4.5.tpr] PASSED [ 92%] 718s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRGromacsVersions::test_chainIDs[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_4.5.1.tpr] PASSED [ 92%] 718s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRGromacsVersions::test_chainIDs[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_4.5.2.tpr] PASSED [ 92%] 718s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRGromacsVersions::test_chainIDs[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_4.5.3.tpr] PASSED [ 92%] 718s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRGromacsVersions::test_chainIDs[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_4.5.4.tpr] PASSED [ 92%] 718s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRGromacsVersions::test_chainIDs[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_4.5.5.tpr] PASSED [ 92%] 718s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRGromacsVersions::test_chainIDs[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_5.0.2.tpr] PASSED [ 92%] 718s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRGromacsVersions::test_chainIDs[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_5.0.4.tpr] PASSED [ 92%] 718s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRGromacsVersions::test_chainIDs[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_5.0.5.tpr] PASSED [ 92%] 718s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRGromacsVersions::test_chainIDs[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_5.1.tpr] PASSED [ 92%] 718s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRGromacsVersions::test_chainIDs[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_2016.tpr] PASSED [ 92%] 719s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRGromacsVersions::test_chainIDs[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_2018.tpr] PASSED [ 92%] 719s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRGromacsVersions::test_chainIDs[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_2019-beta3.tpr] PASSED [ 92%] 719s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRGromacsVersions::test_chainIDs[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_2020.tpr] PASSED [ 92%] 719s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRGromacsVersions::test_chainIDs[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_2020_double.tpr] PASSED [ 92%] 719s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRGromacsVersions::test_chainIDs[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_2021.tpr] PASSED [ 92%] 719s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRGromacsVersions::test_chainIDs[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_2021_double.tpr] PASSED [ 92%] 719s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRGromacsVersions::test_chainIDs[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_2022-rc1.tpr] PASSED [ 92%] 719s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRGromacsVersions::test_chainIDs[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_2023.tpr] PASSED [ 92%] 719s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRDouble::test_output PASSED [ 92%] 719s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRDouble::test_mandatory_attributes PASSED [ 92%] 719s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRDouble::test_expected_attributes PASSED [ 92%] 720s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRDouble::test_no_unexpected_attributes PASSED [ 92%] 720s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRDouble::test_guessed_attributes PASSED [ 92%] 720s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRDouble::test_size PASSED [ 92%] 720s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRDouble::test_tt_size PASSED [ 92%] 720s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRDouble::test_creates_universe PASSED [ 92%] 720s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRDouble::test_moltypes PASSED [ 93%] 721s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRDouble::test_molnums PASSED [ 93%] 721s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRDouble::test_chainIDs PASSED [ 93%] 721s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPR46x::test_output[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/ab42_gmx_4.6.tpr] PASSED [ 93%] 721s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPR46x::test_output[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/ab42_gmx_4.6.1.tpr] PASSED [ 93%] 722s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPR46x::test_mandatory_attributes[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/ab42_gmx_4.6.tpr] PASSED [ 93%] 722s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPR46x::test_mandatory_attributes[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/ab42_gmx_4.6.1.tpr] PASSED [ 93%] 722s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPR46x::test_expected_attributes[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/ab42_gmx_4.6.tpr] PASSED [ 93%] 722s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPR46x::test_expected_attributes[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/ab42_gmx_4.6.1.tpr] PASSED [ 93%] 723s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPR46x::test_no_unexpected_attributes[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/ab42_gmx_4.6.tpr] PASSED [ 93%] 723s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPR46x::test_no_unexpected_attributes[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/ab42_gmx_4.6.1.tpr] PASSED [ 93%] 723s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPR46x::test_guessed_attributes[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/ab42_gmx_4.6.tpr] PASSED [ 93%] 723s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPR46x::test_guessed_attributes[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/ab42_gmx_4.6.1.tpr] PASSED [ 93%] 724s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPR46x::test_size[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/ab42_gmx_4.6.tpr] PASSED [ 93%] 724s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPR46x::test_size[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/ab42_gmx_4.6.1.tpr] PASSED [ 93%] 724s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPR46x::test_tt_size[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/ab42_gmx_4.6.tpr] PASSED [ 93%] 724s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPR46x::test_tt_size[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/ab42_gmx_4.6.1.tpr] PASSED [ 93%] 724s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPR46x::test_creates_universe[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/ab42_gmx_4.6.tpr] PASSED [ 93%] 725s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPR46x::test_creates_universe[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/ab42_gmx_4.6.1.tpr] PASSED [ 93%] 725s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPR46x::test_moltypes[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/ab42_gmx_4.6.tpr] PASSED [ 93%] 725s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPR46x::test_moltypes[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/ab42_gmx_4.6.1.tpr] PASSED [ 93%] 725s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPR46x::test_molnums[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/ab42_gmx_4.6.tpr] PASSED [ 93%] 726s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPR46x::test_molnums[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/ab42_gmx_4.6.1.tpr] PASSED [ 93%] 726s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPR46x::test_chainIDs[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/ab42_gmx_4.6.tpr] PASSED [ 93%] 726s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPR46x::test_chainIDs[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/ab42_gmx_4.6.1.tpr] PASSED [ 93%] 726s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_bonds[bond0-/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/all_bonded/dummy_5.1.tpr] PASSED [ 93%] 726s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_bonds[bond0-/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/all_bonded/dummy_2016.tpr] PASSED [ 93%] 726s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_bonds[bond0-/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/all_bonded/dummy_2018.tpr] PASSED [ 93%] 726s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_bonds[bond0-/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/all_bonded/dummy_2019-beta3.tpr] PASSED [ 93%] 726s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_bonds[bond0-/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/all_bonded/dummy_2021.tpr] PASSED [ 93%] 726s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_bonds[bond0-/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/all_bonded/dummy_2021_double.tpr] PASSED [ 93%] 726s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_bonds[bond0-/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/all_bonded/dummy_2020.tpr] PASSED [ 93%] 726s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_bonds[bond0-/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/all_bonded/dummy_2020_double.tpr] PASSED [ 93%] 726s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_bonds[bond0-/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/all_bonded/dummy_2022-rc1.tpr] PASSED [ 93%] 726s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_bonds[bond0-/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/all_bonded/dummy_2023.tpr] PASSED [ 93%] 726s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_bonds[bond0-/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/virtual_sites/extra-interactions-2023.tpr] PASSED [ 93%] 726s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_bonds[bond0-/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/virtual_sites/extra-interactions-2022-rc1.tpr] PASSED [ 93%] 726s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_bonds[bond0-/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/virtual_sites/extra-interactions-2021.tpr] PASSED [ 93%] 726s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_bonds[bond0-/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/virtual_sites/extra-interactions-2020.tpr] PASSED [ 93%] 726s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_bonds[bond0-/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/virtual_sites/extra-interactions-2018.tpr] PASSED [ 93%] 726s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_bonds[bond0-/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/virtual_sites/extra-interactions-2016.3.tpr] PASSED [ 93%] 726s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_bonds[bond0-/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/virtual_sites/extra-interactions-4.0.7.tpr] PASSED [ 93%] 726s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_bonds[bond1-/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/all_bonded/dummy_5.1.tpr] PASSED [ 93%] 726s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_bonds[bond1-/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/all_bonded/dummy_2016.tpr] PASSED [ 93%] 726s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_bonds[bond1-/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/all_bonded/dummy_2018.tpr] PASSED [ 93%] 726s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_bonds[bond1-/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/all_bonded/dummy_2019-beta3.tpr] PASSED [ 93%] 726s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_bonds[bond1-/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/all_bonded/dummy_2021.tpr] PASSED [ 93%] 726s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_bonds[bond1-/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/all_bonded/dummy_2021_double.tpr] PASSED [ 93%] 726s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_bonds[bond1-/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/all_bonded/dummy_2020.tpr] PASSED [ 93%] 726s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_bonds[bond1-/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/all_bonded/dummy_2020_double.tpr] PASSED [ 93%] 726s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_bonds[bond1-/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/all_bonded/dummy_2022-rc1.tpr] PASSED [ 93%] 726s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_bonds[bond1-/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/all_bonded/dummy_2023.tpr] PASSED [ 93%] 726s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_bonds[bond1-/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/virtual_sites/extra-interactions-2023.tpr] PASSED [ 93%] 726s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_bonds[bond1-/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/virtual_sites/extra-interactions-2022-rc1.tpr] PASSED [ 93%] 726s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_bonds[bond1-/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/virtual_sites/extra-interactions-2021.tpr] PASSED [ 93%] 726s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_bonds[bond1-/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/virtual_sites/extra-interactions-2020.tpr] PASSED [ 93%] 726s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_bonds[bond1-/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/virtual_sites/extra-interactions-2018.tpr] PASSED [ 93%] 726s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_bonds[bond1-/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/virtual_sites/extra-interactions-2016.3.tpr] PASSED [ 93%] 726s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_bonds[bond1-/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/virtual_sites/extra-interactions-4.0.7.tpr] PASSED [ 93%] 726s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_bonds[bond2-/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/all_bonded/dummy_5.1.tpr] PASSED [ 93%] 726s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_bonds[bond2-/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/all_bonded/dummy_2016.tpr] PASSED [ 93%] 726s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_bonds[bond2-/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/all_bonded/dummy_2018.tpr] PASSED [ 93%] 726s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_bonds[bond2-/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/all_bonded/dummy_2019-beta3.tpr] PASSED [ 93%] 726s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_bonds[bond2-/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/all_bonded/dummy_2021.tpr] PASSED [ 93%] 726s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_bonds[bond2-/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/all_bonded/dummy_2021_double.tpr] PASSED [ 93%] 726s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_bonds[bond2-/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/all_bonded/dummy_2020.tpr] PASSED [ 93%] 726s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_bonds[bond2-/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/all_bonded/dummy_2020_double.tpr] PASSED [ 93%] 726s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_bonds[bond2-/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/all_bonded/dummy_2022-rc1.tpr] PASSED [ 93%] 726s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_bonds[bond2-/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/all_bonded/dummy_2023.tpr] PASSED [ 93%] 726s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_bonds[bond2-/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/virtual_sites/extra-interactions-2023.tpr] PASSED [ 93%] 726s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_bonds[bond2-/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/virtual_sites/extra-interactions-2022-rc1.tpr] PASSED [ 93%] 726s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_bonds[bond2-/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/virtual_sites/extra-interactions-2021.tpr] PASSED [ 93%] 726s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_bonds[bond2-/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/virtual_sites/extra-interactions-2020.tpr] PASSED [ 93%] 726s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_bonds[bond2-/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/virtual_sites/extra-interactions-2018.tpr] PASSED [ 93%] 726s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_bonds[bond2-/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/virtual_sites/extra-interactions-2016.3.tpr] PASSED [ 93%] 726s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_bonds[bond2-/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/virtual_sites/extra-interactions-4.0.7.tpr] PASSED [ 93%] 726s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_bonds[bond3-/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/all_bonded/dummy_5.1.tpr] PASSED [ 93%] 726s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_bonds[bond3-/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/all_bonded/dummy_2016.tpr] PASSED [ 93%] 726s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_bonds[bond3-/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/all_bonded/dummy_2018.tpr] PASSED [ 93%] 726s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_bonds[bond3-/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/all_bonded/dummy_2019-beta3.tpr] PASSED [ 93%] 726s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_bonds[bond3-/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/all_bonded/dummy_2021.tpr] PASSED [ 93%] 726s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_bonds[bond3-/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/all_bonded/dummy_2021_double.tpr] PASSED [ 93%] 726s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_bonds[bond3-/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/all_bonded/dummy_2020.tpr] PASSED [ 93%] 726s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_bonds[bond3-/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/all_bonded/dummy_2020_double.tpr] PASSED [ 93%] 726s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_bonds[bond3-/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/all_bonded/dummy_2022-rc1.tpr] PASSED [ 93%] 726s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_bonds[bond3-/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/all_bonded/dummy_2023.tpr] PASSED [ 93%] 726s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_bonds[bond3-/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/virtual_sites/extra-interactions-2023.tpr] PASSED [ 93%] 726s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_bonds[bond3-/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/virtual_sites/extra-interactions-2022-rc1.tpr] PASSED [ 93%] 726s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_bonds[bond3-/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/virtual_sites/extra-interactions-2021.tpr] PASSED [ 93%] 726s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_bonds[bond3-/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/virtual_sites/extra-interactions-2020.tpr] PASSED [ 93%] 726s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_bonds[bond3-/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/virtual_sites/extra-interactions-2018.tpr] PASSED [ 93%] 726s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_bonds[bond3-/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/virtual_sites/extra-interactions-2016.3.tpr] PASSED [ 93%] 726s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_bonds[bond3-/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/virtual_sites/extra-interactions-4.0.7.tpr] PASSED [ 93%] 726s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_bonds[bond4-/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/all_bonded/dummy_5.1.tpr] PASSED [ 93%] 726s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_bonds[bond4-/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/all_bonded/dummy_2016.tpr] PASSED [ 93%] 726s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_bonds[bond4-/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/all_bonded/dummy_2018.tpr] PASSED [ 93%] 726s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_bonds[bond4-/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/all_bonded/dummy_2019-beta3.tpr] PASSED [ 93%] 726s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_bonds[bond4-/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/all_bonded/dummy_2021.tpr] PASSED [ 93%] 726s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_bonds[bond4-/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/all_bonded/dummy_2021_double.tpr] PASSED [ 93%] 726s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_bonds[bond4-/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/all_bonded/dummy_2020.tpr] PASSED [ 93%] 726s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_bonds[bond4-/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/all_bonded/dummy_2020_double.tpr] PASSED [ 93%] 726s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_bonds[bond4-/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/all_bonded/dummy_2022-rc1.tpr] PASSED [ 93%] 726s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_bonds[bond4-/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/all_bonded/dummy_2023.tpr] PASSED [ 93%] 726s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_bonds[bond4-/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/virtual_sites/extra-interactions-2023.tpr] PASSED [ 93%] 726s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_bonds[bond4-/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/virtual_sites/extra-interactions-2022-rc1.tpr] PASSED [ 93%] 726s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_bonds[bond4-/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/virtual_sites/extra-interactions-2021.tpr] PASSED [ 93%] 726s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_bonds[bond4-/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/virtual_sites/extra-interactions-2020.tpr] PASSED [ 93%] 726s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_bonds[bond4-/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/virtual_sites/extra-interactions-2018.tpr] PASSED [ 93%] 726s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_bonds[bond4-/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/virtual_sites/extra-interactions-2016.3.tpr] PASSED [ 93%] 726s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_bonds[bond4-/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/virtual_sites/extra-interactions-4.0.7.tpr] PASSED [ 93%] 726s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_bonds[bond5-/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/all_bonded/dummy_5.1.tpr] PASSED [ 93%] 726s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_bonds[bond5-/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/all_bonded/dummy_2016.tpr] PASSED [ 93%] 726s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_bonds[bond5-/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/all_bonded/dummy_2018.tpr] PASSED [ 93%] 726s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_bonds[bond5-/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/all_bonded/dummy_2019-beta3.tpr] PASSED [ 93%] 726s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_bonds[bond5-/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/all_bonded/dummy_2021.tpr] PASSED [ 93%] 726s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_bonds[bond5-/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/all_bonded/dummy_2021_double.tpr] PASSED [ 93%] 726s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_bonds[bond5-/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/all_bonded/dummy_2020.tpr] PASSED [ 93%] 726s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_bonds[bond5-/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/all_bonded/dummy_2020_double.tpr] PASSED [ 93%] 726s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_bonds[bond5-/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/all_bonded/dummy_2022-rc1.tpr] PASSED [ 93%] 726s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_bonds[bond5-/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/all_bonded/dummy_2023.tpr] PASSED [ 93%] 726s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_bonds[bond5-/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/virtual_sites/extra-interactions-2023.tpr] PASSED [ 93%] 726s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_bonds[bond5-/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/virtual_sites/extra-interactions-2022-rc1.tpr] PASSED [ 93%] 726s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_bonds[bond5-/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/virtual_sites/extra-interactions-2021.tpr] PASSED [ 93%] 726s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_bonds[bond5-/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/virtual_sites/extra-interactions-2020.tpr] PASSED [ 93%] 726s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_bonds[bond5-/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/virtual_sites/extra-interactions-2018.tpr] PASSED [ 93%] 726s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_bonds[bond5-/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/virtual_sites/extra-interactions-2016.3.tpr] PASSED [ 93%] 726s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_bonds[bond5-/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/virtual_sites/extra-interactions-4.0.7.tpr] PASSED [ 93%] 726s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_bonds[bond6-/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/all_bonded/dummy_5.1.tpr] PASSED [ 93%] 726s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_bonds[bond6-/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/all_bonded/dummy_2016.tpr] PASSED [ 93%] 726s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_bonds[bond6-/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/all_bonded/dummy_2018.tpr] PASSED [ 93%] 726s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_bonds[bond6-/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/all_bonded/dummy_2019-beta3.tpr] PASSED [ 93%] 726s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_bonds[bond6-/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/all_bonded/dummy_2021.tpr] PASSED [ 93%] 726s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_bonds[bond6-/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/all_bonded/dummy_2021_double.tpr] PASSED [ 93%] 726s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_bonds[bond6-/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/all_bonded/dummy_2020.tpr] PASSED [ 93%] 726s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_bonds[bond6-/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/all_bonded/dummy_2020_double.tpr] PASSED [ 93%] 726s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_bonds[bond6-/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/all_bonded/dummy_2022-rc1.tpr] PASSED [ 93%] 726s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_bonds[bond6-/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/all_bonded/dummy_2023.tpr] PASSED [ 93%] 726s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_bonds[bond6-/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/virtual_sites/extra-interactions-2023.tpr] PASSED [ 93%] 726s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_bonds[bond6-/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/virtual_sites/extra-interactions-2022-rc1.tpr] PASSED [ 93%] 726s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_bonds[bond6-/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/virtual_sites/extra-interactions-2021.tpr] PASSED [ 93%] 726s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_bonds[bond6-/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/virtual_sites/extra-interactions-2020.tpr] PASSED [ 93%] 726s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_bonds[bond6-/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/virtual_sites/extra-interactions-2018.tpr] PASSED [ 93%] 726s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_bonds[bond6-/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/virtual_sites/extra-interactions-2016.3.tpr] PASSED [ 93%] 726s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_bonds[bond6-/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/virtual_sites/extra-interactions-4.0.7.tpr] PASSED [ 93%] 726s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_bonds[bond7-/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/all_bonded/dummy_5.1.tpr] PASSED [ 93%] 726s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_bonds[bond7-/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/all_bonded/dummy_2016.tpr] PASSED [ 93%] 726s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_bonds[bond7-/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/all_bonded/dummy_2018.tpr] PASSED [ 93%] 726s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_bonds[bond7-/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/all_bonded/dummy_2019-beta3.tpr] PASSED [ 93%] 726s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_bonds[bond7-/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/all_bonded/dummy_2021.tpr] PASSED [ 93%] 726s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_bonds[bond7-/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/all_bonded/dummy_2021_double.tpr] PASSED [ 93%] 726s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_bonds[bond7-/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/all_bonded/dummy_2020.tpr] PASSED [ 93%] 726s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_bonds[bond7-/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/all_bonded/dummy_2020_double.tpr] PASSED [ 93%] 726s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_bonds[bond7-/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/all_bonded/dummy_2022-rc1.tpr] PASSED [ 93%] 726s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_bonds[bond7-/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/all_bonded/dummy_2023.tpr] PASSED [ 93%] 726s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_bonds[bond7-/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/virtual_sites/extra-interactions-2023.tpr] PASSED [ 93%] 726s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_bonds[bond7-/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/virtual_sites/extra-interactions-2022-rc1.tpr] PASSED [ 93%] 726s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_bonds[bond7-/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/virtual_sites/extra-interactions-2021.tpr] PASSED [ 93%] 726s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_bonds[bond7-/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/virtual_sites/extra-interactions-2020.tpr] PASSED [ 93%] 726s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_bonds[bond7-/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/virtual_sites/extra-interactions-2018.tpr] PASSED [ 93%] 726s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_bonds[bond7-/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/virtual_sites/extra-interactions-2016.3.tpr] PASSED [ 93%] 726s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_bonds[bond7-/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/virtual_sites/extra-interactions-4.0.7.tpr] PASSED [ 93%] 726s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_bonds[bond8-/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/all_bonded/dummy_5.1.tpr] PASSED [ 93%] 726s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_bonds[bond8-/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/all_bonded/dummy_2016.tpr] PASSED [ 93%] 726s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_bonds[bond8-/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/all_bonded/dummy_2018.tpr] PASSED [ 93%] 726s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_bonds[bond8-/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/all_bonded/dummy_2019-beta3.tpr] PASSED [ 93%] 726s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_bonds[bond8-/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/all_bonded/dummy_2021.tpr] PASSED [ 93%] 726s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_bonds[bond8-/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/all_bonded/dummy_2021_double.tpr] PASSED [ 93%] 726s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_bonds[bond8-/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/all_bonded/dummy_2020.tpr] PASSED [ 93%] 726s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_bonds[bond8-/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/all_bonded/dummy_2020_double.tpr] PASSED [ 93%] 726s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_bonds[bond8-/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/all_bonded/dummy_2022-rc1.tpr] PASSED [ 93%] 726s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_bonds[bond8-/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/all_bonded/dummy_2023.tpr] PASSED [ 93%] 726s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_bonds[bond8-/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/virtual_sites/extra-interactions-2023.tpr] PASSED [ 93%] 726s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_bonds[bond8-/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/virtual_sites/extra-interactions-2022-rc1.tpr] PASSED [ 93%] 726s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_bonds[bond8-/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/virtual_sites/extra-interactions-2021.tpr] PASSED [ 93%] 726s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_bonds[bond8-/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/virtual_sites/extra-interactions-2020.tpr] PASSED [ 93%] 726s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_bonds[bond8-/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/virtual_sites/extra-interactions-2018.tpr] PASSED [ 93%] 726s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_bonds[bond8-/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/virtual_sites/extra-interactions-2016.3.tpr] PASSED [ 93%] 726s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_bonds[bond8-/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/virtual_sites/extra-interactions-4.0.7.tpr] PASSED [ 93%] 726s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_bonds[bond9-/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/all_bonded/dummy_5.1.tpr] PASSED [ 93%] 726s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_bonds[bond9-/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/all_bonded/dummy_2016.tpr] PASSED [ 93%] 726s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_bonds[bond9-/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/all_bonded/dummy_2018.tpr] PASSED [ 93%] 726s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_bonds[bond9-/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/all_bonded/dummy_2019-beta3.tpr] PASSED [ 93%] 726s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_bonds[bond9-/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/all_bonded/dummy_2021.tpr] PASSED [ 93%] 726s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_bonds[bond9-/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/all_bonded/dummy_2021_double.tpr] PASSED [ 93%] 726s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_bonds[bond9-/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/all_bonded/dummy_2020.tpr] PASSED [ 94%] 726s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_bonds[bond9-/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/all_bonded/dummy_2020_double.tpr] PASSED [ 94%] 726s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_bonds[bond9-/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/all_bonded/dummy_2022-rc1.tpr] PASSED [ 94%] 726s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_bonds[bond9-/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/all_bonded/dummy_2023.tpr] PASSED [ 94%] 726s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_bonds[bond9-/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/virtual_sites/extra-interactions-2023.tpr] PASSED [ 94%] 726s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_bonds[bond9-/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/virtual_sites/extra-interactions-2022-rc1.tpr] PASSED [ 94%] 726s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_bonds[bond9-/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/virtual_sites/extra-interactions-2021.tpr] PASSED [ 94%] 726s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_bonds[bond9-/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/virtual_sites/extra-interactions-2020.tpr] PASSED [ 94%] 726s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_bonds[bond9-/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/virtual_sites/extra-interactions-2018.tpr] PASSED [ 94%] 726s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_bonds[bond9-/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/virtual_sites/extra-interactions-2016.3.tpr] PASSED [ 94%] 726s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_bonds[bond9-/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/virtual_sites/extra-interactions-4.0.7.tpr] PASSED [ 94%] 726s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_bonds[bond10-/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/all_bonded/dummy_5.1.tpr] PASSED [ 94%] 726s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_bonds[bond10-/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/all_bonded/dummy_2016.tpr] PASSED [ 94%] 726s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_bonds[bond10-/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/all_bonded/dummy_2018.tpr] PASSED [ 94%] 726s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_bonds[bond10-/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/all_bonded/dummy_2019-beta3.tpr] PASSED [ 94%] 726s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_bonds[bond10-/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/all_bonded/dummy_2021.tpr] PASSED [ 94%] 726s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_bonds[bond10-/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/all_bonded/dummy_2021_double.tpr] PASSED [ 94%] 726s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_bonds[bond10-/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/all_bonded/dummy_2020.tpr] PASSED [ 94%] 726s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_bonds[bond10-/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/all_bonded/dummy_2020_double.tpr] PASSED [ 94%] 726s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_bonds[bond10-/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/all_bonded/dummy_2022-rc1.tpr] PASSED [ 94%] 726s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_bonds[bond10-/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/all_bonded/dummy_2023.tpr] PASSED [ 94%] 726s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_bonds[bond10-/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/virtual_sites/extra-interactions-2023.tpr] PASSED [ 94%] 726s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_bonds[bond10-/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/virtual_sites/extra-interactions-2022-rc1.tpr] PASSED [ 94%] 726s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_bonds[bond10-/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/virtual_sites/extra-interactions-2021.tpr] PASSED [ 94%] 726s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_bonds[bond10-/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/virtual_sites/extra-interactions-2020.tpr] PASSED [ 94%] 726s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_bonds[bond10-/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/virtual_sites/extra-interactions-2018.tpr] PASSED [ 94%] 726s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_bonds[bond10-/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/virtual_sites/extra-interactions-2016.3.tpr] PASSED [ 94%] 726s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_bonds[bond10-/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/virtual_sites/extra-interactions-4.0.7.tpr] PASSED [ 94%] 726s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_bonds[bond11-/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/all_bonded/dummy_5.1.tpr] PASSED [ 94%] 726s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_bonds[bond11-/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/all_bonded/dummy_2016.tpr] PASSED [ 94%] 726s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_bonds[bond11-/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/all_bonded/dummy_2018.tpr] PASSED [ 94%] 726s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_bonds[bond11-/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/all_bonded/dummy_2019-beta3.tpr] PASSED [ 94%] 726s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_bonds[bond11-/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/all_bonded/dummy_2021.tpr] PASSED [ 94%] 726s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_bonds[bond11-/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/all_bonded/dummy_2021_double.tpr] PASSED [ 94%] 726s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_bonds[bond11-/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/all_bonded/dummy_2020.tpr] PASSED [ 94%] 726s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_bonds[bond11-/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/all_bonded/dummy_2020_double.tpr] PASSED [ 94%] 726s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_bonds[bond11-/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/all_bonded/dummy_2022-rc1.tpr] PASSED [ 94%] 726s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_bonds[bond11-/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/all_bonded/dummy_2023.tpr] PASSED [ 94%] 726s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_bonds[bond11-/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/virtual_sites/extra-interactions-2023.tpr] PASSED [ 94%] 726s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_bonds[bond11-/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/virtual_sites/extra-interactions-2022-rc1.tpr] PASSED [ 94%] 726s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_bonds[bond11-/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/virtual_sites/extra-interactions-2021.tpr] PASSED [ 94%] 726s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_bonds[bond11-/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/virtual_sites/extra-interactions-2020.tpr] PASSED [ 94%] 726s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_bonds[bond11-/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/virtual_sites/extra-interactions-2018.tpr] PASSED [ 94%] 726s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_bonds[bond11-/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/virtual_sites/extra-interactions-2016.3.tpr] PASSED [ 94%] 726s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_bonds[bond11-/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/virtual_sites/extra-interactions-4.0.7.tpr] PASSED [ 94%] 726s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_angles[angle0-/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/all_bonded/dummy_5.1.tpr] PASSED [ 94%] 726s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_angles[angle0-/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/all_bonded/dummy_2016.tpr] PASSED [ 94%] 726s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_angles[angle0-/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/all_bonded/dummy_2018.tpr] PASSED [ 94%] 726s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_angles[angle0-/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/all_bonded/dummy_2019-beta3.tpr] PASSED [ 94%] 726s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_angles[angle0-/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/all_bonded/dummy_2021.tpr] PASSED [ 94%] 726s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_angles[angle0-/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/all_bonded/dummy_2021_double.tpr] PASSED [ 94%] 726s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_angles[angle0-/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/all_bonded/dummy_2020.tpr] PASSED [ 94%] 726s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_angles[angle0-/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/all_bonded/dummy_2020_double.tpr] PASSED [ 94%] 726s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_angles[angle0-/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/all_bonded/dummy_2022-rc1.tpr] PASSED [ 94%] 726s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_angles[angle0-/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/all_bonded/dummy_2023.tpr] PASSED [ 94%] 726s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_angles[angle0-/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/virtual_sites/extra-interactions-2023.tpr] PASSED [ 94%] 726s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_angles[angle0-/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/virtual_sites/extra-interactions-2022-rc1.tpr] PASSED [ 94%] 726s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_angles[angle0-/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/virtual_sites/extra-interactions-2021.tpr] PASSED [ 94%] 726s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_angles[angle0-/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/virtual_sites/extra-interactions-2020.tpr] PASSED [ 94%] 726s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_angles[angle0-/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/virtual_sites/extra-interactions-2018.tpr] PASSED [ 94%] 726s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_angles[angle0-/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/virtual_sites/extra-interactions-2016.3.tpr] PASSED [ 94%] 726s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_angles[angle0-/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/virtual_sites/extra-interactions-4.0.7.tpr] PASSED [ 94%] 726s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_angles[angle1-/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/all_bonded/dummy_5.1.tpr] PASSED [ 94%] 726s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_angles[angle1-/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/all_bonded/dummy_2016.tpr] PASSED [ 94%] 726s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_angles[angle1-/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/all_bonded/dummy_2018.tpr] PASSED [ 94%] 726s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_angles[angle1-/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/all_bonded/dummy_2019-beta3.tpr] PASSED [ 94%] 726s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_angles[angle1-/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/all_bonded/dummy_2021.tpr] PASSED [ 94%] 726s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_angles[angle1-/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/all_bonded/dummy_2021_double.tpr] PASSED [ 94%] 726s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_angles[angle1-/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/all_bonded/dummy_2020.tpr] PASSED [ 94%] 726s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_angles[angle1-/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/all_bonded/dummy_2020_double.tpr] PASSED [ 94%] 726s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_angles[angle1-/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/all_bonded/dummy_2022-rc1.tpr] PASSED [ 94%] 727s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_angles[angle1-/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/all_bonded/dummy_2023.tpr] PASSED [ 94%] 727s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_angles[angle1-/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/virtual_sites/extra-interactions-2023.tpr] PASSED [ 94%] 727s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_angles[angle1-/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/virtual_sites/extra-interactions-2022-rc1.tpr] PASSED [ 94%] 727s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_angles[angle1-/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/virtual_sites/extra-interactions-2021.tpr] PASSED [ 94%] 727s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_angles[angle1-/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/virtual_sites/extra-interactions-2020.tpr] PASSED [ 94%] 727s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_angles[angle1-/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/virtual_sites/extra-interactions-2018.tpr] PASSED [ 94%] 727s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_angles[angle1-/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/virtual_sites/extra-interactions-2016.3.tpr] PASSED [ 94%] 727s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_angles[angle1-/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/virtual_sites/extra-interactions-4.0.7.tpr] PASSED [ 94%] 727s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_angles[angle2-/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/all_bonded/dummy_5.1.tpr] PASSED [ 94%] 727s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_angles[angle2-/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/all_bonded/dummy_2016.tpr] PASSED [ 94%] 727s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_angles[angle2-/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/all_bonded/dummy_2018.tpr] PASSED [ 94%] 727s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_angles[angle2-/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/all_bonded/dummy_2019-beta3.tpr] PASSED [ 94%] 727s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_angles[angle2-/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/all_bonded/dummy_2021.tpr] PASSED [ 94%] 727s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_angles[angle2-/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/all_bonded/dummy_2021_double.tpr] PASSED [ 94%] 727s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_angles[angle2-/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/all_bonded/dummy_2020.tpr] PASSED [ 94%] 727s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_angles[angle2-/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/all_bonded/dummy_2020_double.tpr] PASSED [ 94%] 727s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_angles[angle2-/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/all_bonded/dummy_2022-rc1.tpr] PASSED [ 94%] 727s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_angles[angle2-/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/all_bonded/dummy_2023.tpr] PASSED [ 94%] 727s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_angles[angle2-/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/virtual_sites/extra-interactions-2023.tpr] PASSED [ 94%] 727s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_angles[angle2-/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/virtual_sites/extra-interactions-2022-rc1.tpr] PASSED [ 94%] 727s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_angles[angle2-/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/virtual_sites/extra-interactions-2021.tpr] PASSED [ 94%] 727s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_angles[angle2-/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/virtual_sites/extra-interactions-2020.tpr] PASSED [ 94%] 727s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_angles[angle2-/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/virtual_sites/extra-interactions-2018.tpr] PASSED [ 94%] 727s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_angles[angle2-/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/virtual_sites/extra-interactions-2016.3.tpr] PASSED [ 94%] 727s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_angles[angle2-/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/virtual_sites/extra-interactions-4.0.7.tpr] PASSED [ 94%] 727s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_angles[angle3-/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/all_bonded/dummy_5.1.tpr] PASSED [ 94%] 727s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_angles[angle3-/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/all_bonded/dummy_2016.tpr] PASSED [ 94%] 727s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_angles[angle3-/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/all_bonded/dummy_2018.tpr] PASSED [ 94%] 727s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_angles[angle3-/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/all_bonded/dummy_2019-beta3.tpr] PASSED [ 94%] 727s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_angles[angle3-/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/all_bonded/dummy_2021.tpr] PASSED [ 94%] 727s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_angles[angle3-/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/all_bonded/dummy_2021_double.tpr] PASSED [ 94%] 727s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_angles[angle3-/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/all_bonded/dummy_2020.tpr] PASSED [ 94%] 727s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_angles[angle3-/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/all_bonded/dummy_2020_double.tpr] PASSED [ 94%] 727s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_angles[angle3-/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/all_bonded/dummy_2022-rc1.tpr] PASSED [ 94%] 727s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_angles[angle3-/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/all_bonded/dummy_2023.tpr] PASSED [ 94%] 727s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_angles[angle3-/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/virtual_sites/extra-interactions-2023.tpr] PASSED [ 94%] 727s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_angles[angle3-/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/virtual_sites/extra-interactions-2022-rc1.tpr] PASSED [ 94%] 727s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_angles[angle3-/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/virtual_sites/extra-interactions-2021.tpr] PASSED [ 94%] 727s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_angles[angle3-/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/virtual_sites/extra-interactions-2020.tpr] PASSED [ 94%] 727s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_angles[angle3-/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/virtual_sites/extra-interactions-2018.tpr] PASSED [ 94%] 727s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_angles[angle3-/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/virtual_sites/extra-interactions-2016.3.tpr] PASSED [ 94%] 727s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_angles[angle3-/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/virtual_sites/extra-interactions-4.0.7.tpr] PASSED [ 94%] 727s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_angles[angle4-/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/all_bonded/dummy_5.1.tpr] PASSED [ 94%] 727s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_angles[angle4-/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/all_bonded/dummy_2016.tpr] PASSED [ 94%] 727s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_angles[angle4-/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/all_bonded/dummy_2018.tpr] PASSED [ 94%] 727s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_angles[angle4-/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/all_bonded/dummy_2019-beta3.tpr] PASSED [ 94%] 727s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_angles[angle4-/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/all_bonded/dummy_2021.tpr] PASSED [ 94%] 727s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_angles[angle4-/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/all_bonded/dummy_2021_double.tpr] PASSED [ 94%] 727s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_angles[angle4-/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/all_bonded/dummy_2020.tpr] PASSED [ 94%] 727s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_angles[angle4-/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/all_bonded/dummy_2020_double.tpr] PASSED [ 94%] 727s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_angles[angle4-/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/all_bonded/dummy_2022-rc1.tpr] PASSED [ 94%] 727s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_angles[angle4-/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/all_bonded/dummy_2023.tpr] PASSED [ 94%] 727s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_angles[angle4-/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/virtual_sites/extra-interactions-2023.tpr] PASSED [ 94%] 727s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_angles[angle4-/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/virtual_sites/extra-interactions-2022-rc1.tpr] PASSED [ 94%] 727s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_angles[angle4-/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/virtual_sites/extra-interactions-2021.tpr] PASSED [ 94%] 727s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_angles[angle4-/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/virtual_sites/extra-interactions-2020.tpr] PASSED [ 94%] 727s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_angles[angle4-/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/virtual_sites/extra-interactions-2018.tpr] PASSED [ 94%] 727s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_angles[angle4-/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/virtual_sites/extra-interactions-2016.3.tpr] PASSED [ 94%] 727s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_angles[angle4-/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/virtual_sites/extra-interactions-4.0.7.tpr] PASSED [ 94%] 727s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_angles[angle5-/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/all_bonded/dummy_5.1.tpr] PASSED [ 94%] 727s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_angles[angle5-/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/all_bonded/dummy_2016.tpr] PASSED [ 94%] 727s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_angles[angle5-/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/all_bonded/dummy_2018.tpr] PASSED [ 94%] 727s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_angles[angle5-/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/all_bonded/dummy_2019-beta3.tpr] PASSED [ 94%] 727s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_angles[angle5-/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/all_bonded/dummy_2021.tpr] PASSED [ 94%] 727s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_angles[angle5-/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/all_bonded/dummy_2021_double.tpr] PASSED [ 94%] 727s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_angles[angle5-/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/all_bonded/dummy_2020.tpr] PASSED [ 94%] 727s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_angles[angle5-/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/all_bonded/dummy_2020_double.tpr] PASSED [ 94%] 727s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_angles[angle5-/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/all_bonded/dummy_2022-rc1.tpr] PASSED [ 94%] 727s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_angles[angle5-/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/all_bonded/dummy_2023.tpr] PASSED [ 94%] 727s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_angles[angle5-/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/virtual_sites/extra-interactions-2023.tpr] PASSED [ 94%] 727s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_angles[angle5-/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/virtual_sites/extra-interactions-2022-rc1.tpr] PASSED [ 94%] 727s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_angles[angle5-/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/virtual_sites/extra-interactions-2021.tpr] PASSED [ 94%] 727s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_angles[angle5-/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/virtual_sites/extra-interactions-2020.tpr] PASSED [ 94%] 727s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_angles[angle5-/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/virtual_sites/extra-interactions-2018.tpr] PASSED [ 94%] 727s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_angles[angle5-/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/virtual_sites/extra-interactions-2016.3.tpr] PASSED [ 94%] 727s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_angles[angle5-/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/virtual_sites/extra-interactions-4.0.7.tpr] PASSED [ 94%] 727s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_angles[angle6-/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/all_bonded/dummy_5.1.tpr] PASSED [ 94%] 727s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_angles[angle6-/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/all_bonded/dummy_2016.tpr] PASSED [ 94%] 727s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_angles[angle6-/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/all_bonded/dummy_2018.tpr] PASSED [ 94%] 727s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_angles[angle6-/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/all_bonded/dummy_2019-beta3.tpr] PASSED [ 94%] 727s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_angles[angle6-/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/all_bonded/dummy_2021.tpr] PASSED [ 94%] 727s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_angles[angle6-/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/all_bonded/dummy_2021_double.tpr] PASSED [ 94%] 727s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_angles[angle6-/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/all_bonded/dummy_2020.tpr] PASSED [ 94%] 727s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_angles[angle6-/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/all_bonded/dummy_2020_double.tpr] PASSED [ 94%] 727s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_angles[angle6-/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/all_bonded/dummy_2022-rc1.tpr] PASSED [ 94%] 727s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_angles[angle6-/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/all_bonded/dummy_2023.tpr] PASSED [ 94%] 727s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_angles[angle6-/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/virtual_sites/extra-interactions-2023.tpr] PASSED [ 94%] 727s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_angles[angle6-/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/virtual_sites/extra-interactions-2022-rc1.tpr] PASSED [ 94%] 727s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_angles[angle6-/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/virtual_sites/extra-interactions-2021.tpr] PASSED [ 94%] 727s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_angles[angle6-/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/virtual_sites/extra-interactions-2020.tpr] PASSED [ 94%] 727s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_angles[angle6-/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/virtual_sites/extra-interactions-2018.tpr] PASSED [ 94%] 727s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_angles[angle6-/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/virtual_sites/extra-interactions-2016.3.tpr] PASSED [ 94%] 727s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_angles[angle6-/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/virtual_sites/extra-interactions-4.0.7.tpr] PASSED [ 94%] 727s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_angles[angle7-/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/all_bonded/dummy_5.1.tpr] PASSED [ 94%] 727s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_angles[angle7-/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/all_bonded/dummy_2016.tpr] PASSED [ 94%] 727s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_angles[angle7-/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/all_bonded/dummy_2018.tpr] PASSED [ 94%] 727s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_angles[angle7-/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/all_bonded/dummy_2019-beta3.tpr] PASSED [ 94%] 727s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_angles[angle7-/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/all_bonded/dummy_2021.tpr] PASSED [ 94%] 727s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_angles[angle7-/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/all_bonded/dummy_2021_double.tpr] PASSED [ 94%] 727s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_angles[angle7-/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/all_bonded/dummy_2020.tpr] PASSED [ 94%] 727s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_angles[angle7-/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/all_bonded/dummy_2020_double.tpr] PASSED [ 94%] 727s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_angles[angle7-/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/all_bonded/dummy_2022-rc1.tpr] PASSED [ 94%] 727s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_angles[angle7-/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/all_bonded/dummy_2023.tpr] PASSED [ 94%] 727s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_angles[angle7-/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/virtual_sites/extra-interactions-2023.tpr] PASSED [ 94%] 727s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_angles[angle7-/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/virtual_sites/extra-interactions-2022-rc1.tpr] PASSED [ 94%] 727s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_angles[angle7-/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/virtual_sites/extra-interactions-2021.tpr] PASSED [ 94%] 727s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_angles[angle7-/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/virtual_sites/extra-interactions-2020.tpr] PASSED [ 94%] 727s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_angles[angle7-/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/virtual_sites/extra-interactions-2018.tpr] PASSED [ 94%] 727s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_angles[angle7-/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/virtual_sites/extra-interactions-2016.3.tpr] PASSED [ 94%] 727s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_angles[angle7-/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/virtual_sites/extra-interactions-4.0.7.tpr] PASSED [ 94%] 727s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_dihedrals[dih0-/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/all_bonded/dummy_5.1.tpr] PASSED [ 94%] 727s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_dihedrals[dih0-/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/all_bonded/dummy_2016.tpr] PASSED [ 94%] 727s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_dihedrals[dih0-/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/all_bonded/dummy_2018.tpr] PASSED [ 94%] 727s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_dihedrals[dih0-/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/all_bonded/dummy_2019-beta3.tpr] PASSED [ 95%] 727s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_dihedrals[dih0-/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/all_bonded/dummy_2021.tpr] PASSED [ 95%] 727s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_dihedrals[dih0-/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/all_bonded/dummy_2021_double.tpr] PASSED [ 95%] 727s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_dihedrals[dih0-/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/all_bonded/dummy_2020.tpr] PASSED [ 95%] 727s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_dihedrals[dih0-/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/all_bonded/dummy_2020_double.tpr] PASSED [ 95%] 727s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_dihedrals[dih0-/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/all_bonded/dummy_2022-rc1.tpr] PASSED [ 95%] 727s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_dihedrals[dih0-/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/all_bonded/dummy_2023.tpr] PASSED [ 95%] 727s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_dihedrals[dih0-/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/virtual_sites/extra-interactions-2023.tpr] PASSED [ 95%] 727s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_dihedrals[dih0-/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/virtual_sites/extra-interactions-2022-rc1.tpr] PASSED [ 95%] 727s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_dihedrals[dih0-/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/virtual_sites/extra-interactions-2021.tpr] PASSED [ 95%] 727s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_dihedrals[dih0-/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/virtual_sites/extra-interactions-2020.tpr] PASSED [ 95%] 727s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_dihedrals[dih0-/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/virtual_sites/extra-interactions-2018.tpr] PASSED [ 95%] 727s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_dihedrals[dih0-/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/virtual_sites/extra-interactions-2016.3.tpr] PASSED [ 95%] 727s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_dihedrals[dih0-/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/virtual_sites/extra-interactions-4.0.7.tpr] PASSED [ 95%] 727s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_dihedrals[dih1-/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/all_bonded/dummy_5.1.tpr] PASSED [ 95%] 727s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_dihedrals[dih1-/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/all_bonded/dummy_2016.tpr] PASSED [ 95%] 727s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_dihedrals[dih1-/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/all_bonded/dummy_2018.tpr] PASSED [ 95%] 727s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_dihedrals[dih1-/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/all_bonded/dummy_2019-beta3.tpr] PASSED [ 95%] 727s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_dihedrals[dih1-/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/all_bonded/dummy_2021.tpr] PASSED [ 95%] 727s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_dihedrals[dih1-/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/all_bonded/dummy_2021_double.tpr] PASSED [ 95%] 727s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_dihedrals[dih1-/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/all_bonded/dummy_2020.tpr] PASSED [ 95%] 727s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_dihedrals[dih1-/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/all_bonded/dummy_2020_double.tpr] PASSED [ 95%] 727s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_dihedrals[dih1-/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/all_bonded/dummy_2022-rc1.tpr] PASSED [ 95%] 727s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_dihedrals[dih1-/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/all_bonded/dummy_2023.tpr] PASSED [ 95%] 727s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_dihedrals[dih1-/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/virtual_sites/extra-interactions-2023.tpr] PASSED [ 95%] 727s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_dihedrals[dih1-/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/virtual_sites/extra-interactions-2022-rc1.tpr] PASSED [ 95%] 727s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_dihedrals[dih1-/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/virtual_sites/extra-interactions-2021.tpr] PASSED [ 95%] 727s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_dihedrals[dih1-/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/virtual_sites/extra-interactions-2020.tpr] PASSED [ 95%] 727s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_dihedrals[dih1-/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/virtual_sites/extra-interactions-2018.tpr] PASSED [ 95%] 727s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_dihedrals[dih1-/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/virtual_sites/extra-interactions-2016.3.tpr] PASSED [ 95%] 727s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_dihedrals[dih1-/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/virtual_sites/extra-interactions-4.0.7.tpr] PASSED [ 95%] 727s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_dihedrals[dih2-/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/all_bonded/dummy_5.1.tpr] PASSED [ 95%] 727s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_dihedrals[dih2-/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/all_bonded/dummy_2016.tpr] PASSED [ 95%] 727s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_dihedrals[dih2-/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/all_bonded/dummy_2018.tpr] PASSED [ 95%] 727s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_dihedrals[dih2-/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/all_bonded/dummy_2019-beta3.tpr] PASSED [ 95%] 727s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_dihedrals[dih2-/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/all_bonded/dummy_2021.tpr] PASSED [ 95%] 727s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_dihedrals[dih2-/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/all_bonded/dummy_2021_double.tpr] PASSED [ 95%] 727s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_dihedrals[dih2-/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/all_bonded/dummy_2020.tpr] PASSED [ 95%] 727s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_dihedrals[dih2-/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/all_bonded/dummy_2020_double.tpr] PASSED [ 95%] 727s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_dihedrals[dih2-/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/all_bonded/dummy_2022-rc1.tpr] PASSED [ 95%] 727s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_dihedrals[dih2-/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/all_bonded/dummy_2023.tpr] PASSED [ 95%] 727s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_dihedrals[dih2-/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/virtual_sites/extra-interactions-2023.tpr] PASSED [ 95%] 727s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_dihedrals[dih2-/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/virtual_sites/extra-interactions-2022-rc1.tpr] PASSED [ 95%] 727s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_dihedrals[dih2-/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/virtual_sites/extra-interactions-2021.tpr] PASSED [ 95%] 727s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_dihedrals[dih2-/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/virtual_sites/extra-interactions-2020.tpr] PASSED [ 95%] 727s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_dihedrals[dih2-/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/virtual_sites/extra-interactions-2018.tpr] PASSED [ 95%] 727s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_dihedrals[dih2-/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/virtual_sites/extra-interactions-2016.3.tpr] PASSED [ 95%] 727s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_dihedrals[dih2-/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/virtual_sites/extra-interactions-4.0.7.tpr] PASSED [ 95%] 727s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_dihedrals[dih3-/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/all_bonded/dummy_5.1.tpr] PASSED [ 95%] 727s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_dihedrals[dih3-/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/all_bonded/dummy_2016.tpr] PASSED [ 95%] 727s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_dihedrals[dih3-/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/all_bonded/dummy_2018.tpr] PASSED [ 95%] 727s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_dihedrals[dih3-/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/all_bonded/dummy_2019-beta3.tpr] PASSED [ 95%] 727s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_dihedrals[dih3-/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/all_bonded/dummy_2021.tpr] PASSED [ 95%] 727s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_dihedrals[dih3-/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/all_bonded/dummy_2021_double.tpr] PASSED [ 95%] 727s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_dihedrals[dih3-/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/all_bonded/dummy_2020.tpr] PASSED [ 95%] 727s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_dihedrals[dih3-/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/all_bonded/dummy_2020_double.tpr] PASSED [ 95%] 727s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_dihedrals[dih3-/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/all_bonded/dummy_2022-rc1.tpr] PASSED [ 95%] 727s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_dihedrals[dih3-/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/all_bonded/dummy_2023.tpr] PASSED [ 95%] 727s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_dihedrals[dih3-/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/virtual_sites/extra-interactions-2023.tpr] PASSED [ 95%] 727s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_dihedrals[dih3-/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/virtual_sites/extra-interactions-2022-rc1.tpr] PASSED [ 95%] 727s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_dihedrals[dih3-/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/virtual_sites/extra-interactions-2021.tpr] PASSED [ 95%] 727s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_dihedrals[dih3-/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/virtual_sites/extra-interactions-2020.tpr] PASSED [ 95%] 727s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_dihedrals[dih3-/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/virtual_sites/extra-interactions-2018.tpr] PASSED [ 95%] 727s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_dihedrals[dih3-/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/virtual_sites/extra-interactions-2016.3.tpr] PASSED [ 95%] 727s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_dihedrals[dih3-/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/virtual_sites/extra-interactions-4.0.7.tpr] PASSED [ 95%] 727s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_dihedrals[dih4-/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/all_bonded/dummy_5.1.tpr] PASSED [ 95%] 727s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_dihedrals[dih4-/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/all_bonded/dummy_2016.tpr] PASSED [ 95%] 727s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_dihedrals[dih4-/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/all_bonded/dummy_2018.tpr] PASSED [ 95%] 727s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_dihedrals[dih4-/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/all_bonded/dummy_2019-beta3.tpr] PASSED [ 95%] 727s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_dihedrals[dih4-/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/all_bonded/dummy_2021.tpr] PASSED [ 95%] 727s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_dihedrals[dih4-/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/all_bonded/dummy_2021_double.tpr] PASSED [ 95%] 727s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_dihedrals[dih4-/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/all_bonded/dummy_2020.tpr] PASSED [ 95%] 727s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_dihedrals[dih4-/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/all_bonded/dummy_2020_double.tpr] PASSED [ 95%] 727s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_dihedrals[dih4-/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/all_bonded/dummy_2022-rc1.tpr] PASSED [ 95%] 727s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_dihedrals[dih4-/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/all_bonded/dummy_2023.tpr] PASSED [ 95%] 727s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_dihedrals[dih4-/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/virtual_sites/extra-interactions-2023.tpr] PASSED [ 95%] 727s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_dihedrals[dih4-/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/virtual_sites/extra-interactions-2022-rc1.tpr] PASSED [ 95%] 727s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_dihedrals[dih4-/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/virtual_sites/extra-interactions-2021.tpr] PASSED [ 95%] 727s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_dihedrals[dih4-/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/virtual_sites/extra-interactions-2020.tpr] PASSED [ 95%] 727s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_dihedrals[dih4-/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/virtual_sites/extra-interactions-2018.tpr] PASSED [ 95%] 727s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_dihedrals[dih4-/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/virtual_sites/extra-interactions-2016.3.tpr] PASSED [ 95%] 727s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_dihedrals[dih4-/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/virtual_sites/extra-interactions-4.0.7.tpr] PASSED [ 95%] 727s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_dihedrals[dih5-/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/all_bonded/dummy_5.1.tpr] PASSED [ 95%] 727s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_dihedrals[dih5-/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/all_bonded/dummy_2016.tpr] PASSED [ 95%] 727s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_dihedrals[dih5-/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/all_bonded/dummy_2018.tpr] PASSED [ 95%] 727s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_dihedrals[dih5-/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/all_bonded/dummy_2019-beta3.tpr] PASSED [ 95%] 727s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_dihedrals[dih5-/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/all_bonded/dummy_2021.tpr] PASSED [ 95%] 727s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_dihedrals[dih5-/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/all_bonded/dummy_2021_double.tpr] PASSED [ 95%] 727s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_dihedrals[dih5-/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/all_bonded/dummy_2020.tpr] PASSED [ 95%] 727s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_dihedrals[dih5-/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/all_bonded/dummy_2020_double.tpr] PASSED [ 95%] 727s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_dihedrals[dih5-/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/all_bonded/dummy_2022-rc1.tpr] PASSED [ 95%] 727s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_dihedrals[dih5-/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/all_bonded/dummy_2023.tpr] PASSED [ 95%] 727s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_dihedrals[dih5-/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/virtual_sites/extra-interactions-2023.tpr] PASSED [ 95%] 727s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_dihedrals[dih5-/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/virtual_sites/extra-interactions-2022-rc1.tpr] PASSED [ 95%] 727s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_dihedrals[dih5-/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/virtual_sites/extra-interactions-2021.tpr] PASSED [ 95%] 727s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_dihedrals[dih5-/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/virtual_sites/extra-interactions-2020.tpr] PASSED [ 95%] 727s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_dihedrals[dih5-/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/virtual_sites/extra-interactions-2018.tpr] PASSED [ 95%] 727s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_dihedrals[dih5-/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/virtual_sites/extra-interactions-2016.3.tpr] PASSED [ 95%] 727s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_dihedrals[dih5-/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/virtual_sites/extra-interactions-4.0.7.tpr] PASSED [ 95%] 727s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_impropers[impr0-/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/all_bonded/dummy_5.1.tpr] PASSED [ 95%] 727s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_impropers[impr0-/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/all_bonded/dummy_2016.tpr] PASSED [ 95%] 727s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_impropers[impr0-/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/all_bonded/dummy_2018.tpr] PASSED [ 95%] 727s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_impropers[impr0-/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/all_bonded/dummy_2019-beta3.tpr] PASSED [ 95%] 727s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_impropers[impr0-/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/all_bonded/dummy_2021.tpr] PASSED [ 95%] 727s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_impropers[impr0-/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/all_bonded/dummy_2021_double.tpr] PASSED [ 95%] 727s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_impropers[impr0-/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/all_bonded/dummy_2020.tpr] PASSED [ 95%] 727s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_impropers[impr0-/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/all_bonded/dummy_2020_double.tpr] PASSED [ 95%] 727s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_impropers[impr0-/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/all_bonded/dummy_2022-rc1.tpr] PASSED [ 95%] 727s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_impropers[impr0-/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/all_bonded/dummy_2023.tpr] PASSED [ 95%] 727s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_impropers[impr0-/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/virtual_sites/extra-interactions-2023.tpr] PASSED [ 95%] 727s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_impropers[impr0-/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/virtual_sites/extra-interactions-2022-rc1.tpr] PASSED [ 95%] 727s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_impropers[impr0-/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/virtual_sites/extra-interactions-2021.tpr] PASSED [ 95%] 727s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_impropers[impr0-/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/virtual_sites/extra-interactions-2020.tpr] PASSED [ 95%] 727s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_impropers[impr0-/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/virtual_sites/extra-interactions-2018.tpr] PASSED [ 95%] 727s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_impropers[impr0-/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/virtual_sites/extra-interactions-2016.3.tpr] PASSED [ 95%] 727s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_impropers[impr0-/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/virtual_sites/extra-interactions-4.0.7.tpr] PASSED [ 95%] 727s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_impropers[impr1-/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/all_bonded/dummy_5.1.tpr] PASSED [ 95%] 727s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_impropers[impr1-/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/all_bonded/dummy_2016.tpr] PASSED [ 95%] 727s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_impropers[impr1-/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/all_bonded/dummy_2018.tpr] PASSED [ 95%] 727s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_impropers[impr1-/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/all_bonded/dummy_2019-beta3.tpr] PASSED [ 95%] 727s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_impropers[impr1-/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/all_bonded/dummy_2021.tpr] PASSED [ 95%] 727s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_impropers[impr1-/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/all_bonded/dummy_2021_double.tpr] PASSED [ 95%] 727s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_impropers[impr1-/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/all_bonded/dummy_2020.tpr] PASSED [ 95%] 727s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_impropers[impr1-/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/all_bonded/dummy_2020_double.tpr] PASSED [ 95%] 727s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_impropers[impr1-/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/all_bonded/dummy_2022-rc1.tpr] PASSED [ 95%] 727s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_impropers[impr1-/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/all_bonded/dummy_2023.tpr] PASSED [ 95%] 727s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_impropers[impr1-/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/virtual_sites/extra-interactions-2023.tpr] PASSED [ 95%] 727s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_impropers[impr1-/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/virtual_sites/extra-interactions-2022-rc1.tpr] PASSED [ 95%] 727s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_impropers[impr1-/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/virtual_sites/extra-interactions-2021.tpr] PASSED [ 95%] 727s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_impropers[impr1-/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/virtual_sites/extra-interactions-2020.tpr] PASSED [ 95%] 727s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_impropers[impr1-/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/virtual_sites/extra-interactions-2018.tpr] PASSED [ 95%] 727s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_impropers[impr1-/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/virtual_sites/extra-interactions-2016.3.tpr] PASSED [ 95%] 727s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_impropers[impr1-/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/virtual_sites/extra-interactions-4.0.7.tpr] PASSED [ 95%] 727s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_settle[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_4.0.tpr] PASSED [ 95%] 727s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_settle[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_4.0.2.tpr] PASSED [ 95%] 727s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_settle[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_4.0.3.tpr] PASSED [ 95%] 727s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_settle[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_4.0.4.tpr] PASSED [ 95%] 727s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_settle[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_4.0.5.tpr] PASSED [ 95%] 727s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_settle[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_4.0.6.tpr] PASSED [ 95%] 727s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_settle[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_4.0.7.tpr] PASSED [ 95%] 727s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_settle[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_4.5.tpr] PASSED [ 95%] 728s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_settle[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_4.5.1.tpr] PASSED [ 95%] 728s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_settle[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_4.5.2.tpr] PASSED [ 95%] 728s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_settle[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_4.5.3.tpr] PASSED [ 95%] 728s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_settle[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_4.5.4.tpr] PASSED [ 95%] 728s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_settle[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_5.0.2.tpr] PASSED [ 95%] 728s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_settle[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_5.0.4.tpr] PASSED [ 95%] 728s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_settle[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_5.0.5.tpr] PASSED [ 95%] 728s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_settle[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_5.1.tpr] PASSED [ 95%] 729s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_settle[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_2016.tpr] PASSED [ 95%] 729s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_settle[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_2018.tpr] PASSED [ 95%] 729s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_settle[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_2023.tpr] PASSED [ 95%] 729s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_fail_for_unsupported_files[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_2020-beta2.tpr-OSError] PASSED [ 95%] 729s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_fail_for_unsupported_files[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/all_bonded/dummy_2020-beta2.tpr-OSError] PASSED [ 95%] 729s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_fail_for_unsupported_files[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/all_bonded/dummy_3.3.4.tpr-NotImplementedError] PASSED [ 95%] 729s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_fail_for_unsupported_files[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/adk_oplsaa.xtc-OSError] PASSED [ 95%] 729s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_no_elements[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/all_bonded/dummy_5.1.tpr] PASSED [ 95%] 729s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_no_elements[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/all_bonded/dummy_2016.tpr] PASSED [ 95%] 729s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_no_elements[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/all_bonded/dummy_2018.tpr] PASSED [ 95%] 729s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_no_elements[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/all_bonded/dummy_2019-beta3.tpr] PASSED [ 95%] 729s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_no_elements[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/all_bonded/dummy_2021.tpr] PASSED [ 95%] 729s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_no_elements[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/all_bonded/dummy_2021_double.tpr] PASSED [ 95%] 729s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_no_elements[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/all_bonded/dummy_2020.tpr] PASSED [ 95%] 729s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_no_elements[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/all_bonded/dummy_2020_double.tpr] PASSED [ 95%] 729s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_no_elements[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/all_bonded/dummy_2022-rc1.tpr] PASSED [ 95%] 729s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_no_elements[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/all_bonded/dummy_2023.tpr] PASSED [ 95%] 729s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_no_elements[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/virtual_sites/extra-interactions-2023.tpr] PASSED [ 95%] 729s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_no_elements[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/virtual_sites/extra-interactions-2022-rc1.tpr] PASSED [ 95%] 729s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_no_elements[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/virtual_sites/extra-interactions-2021.tpr] PASSED [ 95%] 729s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_no_elements[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/virtual_sites/extra-interactions-2020.tpr] PASSED [ 95%] 729s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_no_elements[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/virtual_sites/extra-interactions-2018.tpr] PASSED [ 95%] 729s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_no_elements[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/virtual_sites/extra-interactions-2016.3.tpr] PASSED [ 95%] 729s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_no_elements[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/virtual_sites/extra-interactions-4.0.7.tpr] PASSED [ 95%] 729s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_elements PASSED [ 95%] 729s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_resids[False-0] PASSED [ 95%] 729s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_resids[True-1] PASSED [ 95%] 730s testsuite/MDAnalysisTests/topology/test_txyz.py::TestTXYZParser::test_output[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/coordinates/test.txyz] PASSED [ 95%] 730s testsuite/MDAnalysisTests/topology/test_txyz.py::TestTXYZParser::test_output[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/coordinates/test.arc] PASSED [ 95%] 730s testsuite/MDAnalysisTests/topology/test_txyz.py::TestTXYZParser::test_mandatory_attributes[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/coordinates/test.txyz] PASSED [ 95%] 730s testsuite/MDAnalysisTests/topology/test_txyz.py::TestTXYZParser::test_mandatory_attributes[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/coordinates/test.arc] PASSED [ 95%] 730s testsuite/MDAnalysisTests/topology/test_txyz.py::TestTXYZParser::test_expected_attributes[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/coordinates/test.txyz] PASSED [ 95%] 730s testsuite/MDAnalysisTests/topology/test_txyz.py::TestTXYZParser::test_expected_attributes[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/coordinates/test.arc] PASSED [ 95%] 730s testsuite/MDAnalysisTests/topology/test_txyz.py::TestTXYZParser::test_no_unexpected_attributes[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/coordinates/test.txyz] PASSED [ 95%] 730s testsuite/MDAnalysisTests/topology/test_txyz.py::TestTXYZParser::test_no_unexpected_attributes[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/coordinates/test.arc] PASSED [ 95%] 730s testsuite/MDAnalysisTests/topology/test_txyz.py::TestTXYZParser::test_guessed_attributes[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/coordinates/test.txyz] PASSED [ 96%] 730s testsuite/MDAnalysisTests/topology/test_txyz.py::TestTXYZParser::test_guessed_attributes[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/coordinates/test.arc] PASSED [ 96%] 730s testsuite/MDAnalysisTests/topology/test_txyz.py::TestTXYZParser::test_size[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/coordinates/test.txyz] PASSED [ 96%] 730s testsuite/MDAnalysisTests/topology/test_txyz.py::TestTXYZParser::test_size[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/coordinates/test.arc] PASSED [ 96%] 730s testsuite/MDAnalysisTests/topology/test_txyz.py::TestTXYZParser::test_tt_size[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/coordinates/test.txyz] PASSED [ 96%] 730s testsuite/MDAnalysisTests/topology/test_txyz.py::TestTXYZParser::test_tt_size[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/coordinates/test.arc] PASSED [ 96%] 730s testsuite/MDAnalysisTests/topology/test_txyz.py::TestTXYZParser::test_creates_universe[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/coordinates/test.txyz] PASSED [ 96%] 730s testsuite/MDAnalysisTests/topology/test_txyz.py::TestTXYZParser::test_creates_universe[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/coordinates/test.arc] PASSED [ 96%] 730s testsuite/MDAnalysisTests/topology/test_txyz.py::TestTXYZParser::test_number_of_bonds[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/coordinates/test.txyz] PASSED [ 96%] 730s testsuite/MDAnalysisTests/topology/test_txyz.py::TestTXYZParser::test_number_of_bonds[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/coordinates/test.arc] PASSED [ 96%] 730s testsuite/MDAnalysisTests/topology/test_txyz.py::TestTXYZParser::test_atom_type_type[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/coordinates/test.txyz] PASSED [ 96%] 730s testsuite/MDAnalysisTests/topology/test_txyz.py::TestTXYZParser::test_atom_type_type[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/coordinates/test.arc] PASSED [ 96%] 730s testsuite/MDAnalysisTests/topology/test_txyz.py::test_TXYZ_elements PASSED [ 96%] 730s testsuite/MDAnalysisTests/topology/test_txyz.py::test_missing_elements_noattribute PASSED [ 96%] 730s testsuite/MDAnalysisTests/topology/test_xpdb.py::TestXPDBParser::test_output PASSED [ 96%] 730s testsuite/MDAnalysisTests/topology/test_xpdb.py::TestXPDBParser::test_mandatory_attributes PASSED [ 96%] 730s testsuite/MDAnalysisTests/topology/test_xpdb.py::TestXPDBParser::test_expected_attributes PASSED [ 96%] 730s testsuite/MDAnalysisTests/topology/test_xpdb.py::TestXPDBParser::test_no_unexpected_attributes PASSED [ 96%] 730s testsuite/MDAnalysisTests/topology/test_xpdb.py::TestXPDBParser::test_guessed_attributes PASSED [ 96%] 730s testsuite/MDAnalysisTests/topology/test_xpdb.py::TestXPDBParser::test_size PASSED [ 96%] 730s testsuite/MDAnalysisTests/topology/test_xpdb.py::TestXPDBParser::test_tt_size PASSED [ 96%] 730s testsuite/MDAnalysisTests/topology/test_xpdb.py::TestXPDBParser::test_creates_universe PASSED [ 96%] 730s testsuite/MDAnalysisTests/topology/test_xyz.py::TestXYZMini::test_output PASSED [ 96%] 730s testsuite/MDAnalysisTests/topology/test_xyz.py::TestXYZMini::test_mandatory_attributes PASSED [ 96%] 730s testsuite/MDAnalysisTests/topology/test_xyz.py::TestXYZMini::test_expected_attributes PASSED [ 96%] 730s testsuite/MDAnalysisTests/topology/test_xyz.py::TestXYZMini::test_no_unexpected_attributes PASSED [ 96%] 730s testsuite/MDAnalysisTests/topology/test_xyz.py::TestXYZMini::test_guessed_attributes PASSED [ 96%] 730s testsuite/MDAnalysisTests/topology/test_xyz.py::TestXYZMini::test_size PASSED [ 96%] 730s testsuite/MDAnalysisTests/topology/test_xyz.py::TestXYZMini::test_tt_size PASSED [ 96%] 730s testsuite/MDAnalysisTests/topology/test_xyz.py::TestXYZMini::test_creates_universe PASSED [ 96%] 730s testsuite/MDAnalysisTests/topology/test_xyz.py::TestXYZParser::test_output[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/2r9r-1b.xyz] PASSED [ 96%] 730s testsuite/MDAnalysisTests/topology/test_xyz.py::TestXYZParser::test_output[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/2r9r-1b.xyz.bz2] PASSED [ 96%] 730s testsuite/MDAnalysisTests/topology/test_xyz.py::TestXYZParser::test_mandatory_attributes[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/2r9r-1b.xyz] PASSED [ 96%] 730s testsuite/MDAnalysisTests/topology/test_xyz.py::TestXYZParser::test_mandatory_attributes[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/2r9r-1b.xyz.bz2] PASSED [ 96%] 730s testsuite/MDAnalysisTests/topology/test_xyz.py::TestXYZParser::test_expected_attributes[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/2r9r-1b.xyz] PASSED [ 96%] 730s testsuite/MDAnalysisTests/topology/test_xyz.py::TestXYZParser::test_expected_attributes[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/2r9r-1b.xyz.bz2] PASSED [ 96%] 730s testsuite/MDAnalysisTests/topology/test_xyz.py::TestXYZParser::test_no_unexpected_attributes[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/2r9r-1b.xyz] PASSED [ 96%] 730s testsuite/MDAnalysisTests/topology/test_xyz.py::TestXYZParser::test_no_unexpected_attributes[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/2r9r-1b.xyz.bz2] PASSED [ 96%] 730s testsuite/MDAnalysisTests/topology/test_xyz.py::TestXYZParser::test_guessed_attributes[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/2r9r-1b.xyz] PASSED [ 96%] 730s testsuite/MDAnalysisTests/topology/test_xyz.py::TestXYZParser::test_guessed_attributes[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/2r9r-1b.xyz.bz2] PASSED [ 96%] 730s testsuite/MDAnalysisTests/topology/test_xyz.py::TestXYZParser::test_size[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/2r9r-1b.xyz] PASSED [ 96%] 730s testsuite/MDAnalysisTests/topology/test_xyz.py::TestXYZParser::test_size[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/2r9r-1b.xyz.bz2] PASSED [ 96%] 730s testsuite/MDAnalysisTests/topology/test_xyz.py::TestXYZParser::test_tt_size[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/2r9r-1b.xyz] PASSED [ 96%] 730s testsuite/MDAnalysisTests/topology/test_xyz.py::TestXYZParser::test_tt_size[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/2r9r-1b.xyz.bz2] PASSED [ 96%] 730s testsuite/MDAnalysisTests/topology/test_xyz.py::TestXYZParser::test_creates_universe[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/2r9r-1b.xyz] PASSED [ 96%] 730s testsuite/MDAnalysisTests/topology/test_xyz.py::TestXYZParser::test_creates_universe[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/2r9r-1b.xyz.bz2] PASSED [ 96%] 730s testsuite/MDAnalysisTests/transformations/test_base.py::test_default_value PASSED [ 96%] 730s testsuite/MDAnalysisTests/transformations/test_base.py::test_no_transform_function PASSED [ 96%] 730s testsuite/MDAnalysisTests/transformations/test_base.py::test_custom_value PASSED [ 96%] 730s testsuite/MDAnalysisTests/transformations/test_base.py::test_setting_thread_limit_value PASSED [ 96%] 730s testsuite/MDAnalysisTests/transformations/test_base.py::test_thread_limit_apply PASSED [ 96%] 730s testsuite/MDAnalysisTests/transformations/test_boxdimensions.py::test_boxdimensions_dims PASSED [ 96%] 730s testsuite/MDAnalysisTests/transformations/test_boxdimensions.py::test_dimensions_vector[dim_vector_shapes0] PASSED [ 96%] 730s testsuite/MDAnalysisTests/transformations/test_boxdimensions.py::test_dimensions_vector[dim_vector_shapes1] PASSED [ 96%] 730s testsuite/MDAnalysisTests/transformations/test_boxdimensions.py::test_dimensions_vector[dim_vector_shapes2] PASSED [ 96%] 730s testsuite/MDAnalysisTests/transformations/test_boxdimensions.py::test_dimensions_vector[dim_vector_shapes3] PASSED [ 96%] 730s testsuite/MDAnalysisTests/transformations/test_boxdimensions.py::test_dimensions_vector[dim_vector_shapes4] PASSED [ 96%] 730s testsuite/MDAnalysisTests/transformations/test_boxdimensions.py::test_dimensions_vector[dim_vector_shapes5] PASSED [ 96%] 730s testsuite/MDAnalysisTests/transformations/test_boxdimensions.py::test_dimensions_vector[111909090] PASSED [ 96%] 730s testsuite/MDAnalysisTests/transformations/test_boxdimensions.py::test_dimensions_vector_asarray[dim_vector_forms_dtypes0] PASSED [ 96%] 730s testsuite/MDAnalysisTests/transformations/test_boxdimensions.py::test_dimensions_vector_asarray[dim_vector_forms_dtypes1] PASSED [ 96%] 730s testsuite/MDAnalysisTests/transformations/test_boxdimensions.py::test_dimensions_vector_asarray[abcd] PASSED [ 96%] 730s testsuite/MDAnalysisTests/transformations/test_boxdimensions.py::test_dimensions_transformations_api PASSED [ 96%] 730s testsuite/MDAnalysisTests/transformations/test_boxdimensions.py::test_varying_dimensions_transformations_api PASSED [ 96%] 730s testsuite/MDAnalysisTests/transformations/test_boxdimensions.py::test_varying_dimensions_no_data PASSED [ 96%] 730s testsuite/MDAnalysisTests/transformations/test_fit.py::test_fit_translation_bad_ag[universe0] PASSED [ 96%] 730s testsuite/MDAnalysisTests/transformations/test_fit.py::test_fit_translation_bad_ag[universe1] PASSED [ 96%] 730s testsuite/MDAnalysisTests/transformations/test_fit.py::test_fit_translation_bad_ag[universe2] PASSED [ 96%] 730s testsuite/MDAnalysisTests/transformations/test_fit.py::test_fit_translation_bad_ag[universe3] PASSED [ 96%] 730s testsuite/MDAnalysisTests/transformations/test_fit.py::test_fit_translation_bad_ag[universe4] PASSED [ 96%] 730s testsuite/MDAnalysisTests/transformations/test_fit.py::test_fit_translation_bad_ag[universe5] PASSED [ 96%] 730s testsuite/MDAnalysisTests/transformations/test_fit.py::test_fit_translation_bad_ag[thisisnotanag] PASSED [ 96%] 730s testsuite/MDAnalysisTests/transformations/test_fit.py::test_fit_translation_bad_ag[1] PASSED [ 96%] 730s testsuite/MDAnalysisTests/transformations/test_fit.py::test_fit_translation_bad_weights[ ] PASSED [ 96%] 730s testsuite/MDAnalysisTests/transformations/test_fit.py::test_fit_translation_bad_weights[totallynotmasses] PASSED [ 96%] 730s testsuite/MDAnalysisTests/transformations/test_fit.py::test_fit_translation_bad_weights[123456789] PASSED [ 96%] 730s testsuite/MDAnalysisTests/transformations/test_fit.py::test_fit_translation_bad_weights[weights3] PASSED [ 96%] 730s testsuite/MDAnalysisTests/transformations/test_fit.py::test_fit_translation_bad_weights[weights4] PASSED [ 96%] 730s testsuite/MDAnalysisTests/transformations/test_fit.py::test_fit_translation_bad_weights[weights5] PASSED [ 96%] 730s testsuite/MDAnalysisTests/transformations/test_fit.py::test_fit_translation_bad_weights[weights6] PASSED [ 96%] 730s testsuite/MDAnalysisTests/transformations/test_fit.py::test_fit_translation_bad_plane[1] PASSED [ 96%] 730s testsuite/MDAnalysisTests/transformations/test_fit.py::test_fit_translation_bad_plane[plane1] PASSED [ 96%] 730s testsuite/MDAnalysisTests/transformations/test_fit.py::test_fit_translation_bad_plane[plane2] PASSED [ 96%] 730s testsuite/MDAnalysisTests/transformations/test_fit.py::test_fit_translation_bad_plane[plane3] PASSED [ 96%] 730s testsuite/MDAnalysisTests/transformations/test_fit.py::test_fit_translation_bad_plane[xyz] PASSED [ 96%] 730s testsuite/MDAnalysisTests/transformations/test_fit.py::test_fit_translation_bad_plane[notaplane] PASSED [ 96%] 730s testsuite/MDAnalysisTests/transformations/test_fit.py::test_fit_translation_no_masses PASSED [ 96%] 730s testsuite/MDAnalysisTests/transformations/test_fit.py::test_fit_translation_no_options PASSED [ 96%] 730s testsuite/MDAnalysisTests/transformations/test_fit.py::test_fit_translation_residue_mismatch PASSED [ 96%] 730s testsuite/MDAnalysisTests/transformations/test_fit.py::test_fit_translation_com PASSED [ 96%] 730s testsuite/MDAnalysisTests/transformations/test_fit.py::test_fit_translation_plane[yz] PASSED [ 96%] 730s testsuite/MDAnalysisTests/transformations/test_fit.py::test_fit_translation_plane[xz] PASSED [ 96%] 730s testsuite/MDAnalysisTests/transformations/test_fit.py::test_fit_translation_plane[xy] PASSED [ 96%] 730s testsuite/MDAnalysisTests/transformations/test_fit.py::test_fit_translation_all_options PASSED [ 96%] 730s testsuite/MDAnalysisTests/transformations/test_fit.py::test_fit_translation_transformations_api PASSED [ 96%] 730s testsuite/MDAnalysisTests/transformations/test_fit.py::test_fit_rot_trans_bad_universe[universe0] PASSED [ 96%] 730s testsuite/MDAnalysisTests/transformations/test_fit.py::test_fit_rot_trans_bad_universe[universe1] PASSED [ 96%] 730s testsuite/MDAnalysisTests/transformations/test_fit.py::test_fit_rot_trans_bad_universe[universe2] PASSED [ 96%] 730s testsuite/MDAnalysisTests/transformations/test_fit.py::test_fit_rot_trans_bad_universe[universe3] PASSED [ 96%] 730s testsuite/MDAnalysisTests/transformations/test_fit.py::test_fit_rot_trans_bad_universe[universe4] PASSED [ 96%] 730s testsuite/MDAnalysisTests/transformations/test_fit.py::test_fit_rot_trans_bad_universe[universe5] PASSED [ 96%] 730s testsuite/MDAnalysisTests/transformations/test_fit.py::test_fit_rot_trans_bad_universe[thisisnotanag] PASSED [ 96%] 730s testsuite/MDAnalysisTests/transformations/test_fit.py::test_fit_rot_trans_bad_universe[1] PASSED [ 96%] 730s testsuite/MDAnalysisTests/transformations/test_fit.py::test_fit_rot_trans_shorter_universe PASSED [ 96%] 730s testsuite/MDAnalysisTests/transformations/test_fit.py::test_fit_rot_trans_bad_weights[ ] PASSED [ 96%] 730s testsuite/MDAnalysisTests/transformations/test_fit.py::test_fit_rot_trans_bad_weights[totallynotmasses] PASSED [ 96%] 730s testsuite/MDAnalysisTests/transformations/test_fit.py::test_fit_rot_trans_bad_weights[123456789] PASSED [ 96%] 730s testsuite/MDAnalysisTests/transformations/test_fit.py::test_fit_rot_trans_bad_weights[weights3] PASSED [ 96%] 730s testsuite/MDAnalysisTests/transformations/test_fit.py::test_fit_rot_trans_bad_weights[weights4] PASSED [ 96%] 730s testsuite/MDAnalysisTests/transformations/test_fit.py::test_fit_rot_trans_bad_weights[weights5] PASSED [ 96%] 730s testsuite/MDAnalysisTests/transformations/test_fit.py::test_fit_rot_trans_bad_weights[weights6] PASSED [ 96%] 730s testsuite/MDAnalysisTests/transformations/test_fit.py::test_fit_rot_trans_bad_plane[ ] PASSED [ 96%] 730s testsuite/MDAnalysisTests/transformations/test_fit.py::test_fit_rot_trans_bad_plane[totallynotaplane] PASSED [ 96%] 730s testsuite/MDAnalysisTests/transformations/test_fit.py::test_fit_rot_trans_bad_plane[xyz] PASSED [ 96%] 730s testsuite/MDAnalysisTests/transformations/test_fit.py::test_fit_rot_trans_bad_plane[123456789] PASSED [ 96%] 730s testsuite/MDAnalysisTests/transformations/test_fit.py::test_fit_rot_trans_bad_plane[plane4] PASSED [ 96%] 730s testsuite/MDAnalysisTests/transformations/test_fit.py::test_fit_rot_trans_bad_plane[plane5] PASSED [ 96%] 730s testsuite/MDAnalysisTests/transformations/test_fit.py::test_fit_rot_trans_bad_plane[plane6] PASSED [ 96%] 730s testsuite/MDAnalysisTests/transformations/test_fit.py::test_fit_rot_trans_bad_plane[plane7] PASSED [ 96%] 730s testsuite/MDAnalysisTests/transformations/test_fit.py::test_fit_rot_trans_no_options PASSED [ 96%] 730s testsuite/MDAnalysisTests/transformations/test_fit.py::test_fit_rot_trans_plane[yz] PASSED [ 96%] 730s testsuite/MDAnalysisTests/transformations/test_fit.py::test_fit_rot_trans_plane[xz] PASSED [ 96%] 730s testsuite/MDAnalysisTests/transformations/test_fit.py::test_fit_rot_trans_plane[xy] PASSED [ 96%] 730s testsuite/MDAnalysisTests/transformations/test_fit.py::test_fit_rot_trans_transformations_api PASSED [ 96%] 730s testsuite/MDAnalysisTests/transformations/test_nojump.py::test_nojump_orthogonal_fwd PASSED [ 96%] 731s testsuite/MDAnalysisTests/transformations/test_nojump.py::test_nojump_nonorthogonal_fwd PASSED [ 96%] 731s testsuite/MDAnalysisTests/transformations/test_nojump.py::test_nojump_constantvel PASSED [ 96%] 731s testsuite/MDAnalysisTests/transformations/test_nojump.py::test_nojump_2nd_frame PASSED [ 96%] 731s testsuite/MDAnalysisTests/transformations/test_nojump.py::test_nojump_3rd_frame PASSED [ 96%] 731s testsuite/MDAnalysisTests/transformations/test_nojump.py::test_nojump_iterate_twice PASSED [ 96%] 731s testsuite/MDAnalysisTests/transformations/test_nojump.py::test_nojump_constantvel_skip PASSED [ 96%] 731s testsuite/MDAnalysisTests/transformations/test_nojump.py::test_nojump_constantvel_stride_2 PASSED [ 96%] 731s testsuite/MDAnalysisTests/transformations/test_nojump.py::test_nojump_constantvel_jumparound PASSED [ 96%] 731s testsuite/MDAnalysisTests/transformations/test_nojump.py::test_missing_dimensions_init PASSED [ 96%] 731s testsuite/MDAnalysisTests/transformations/test_nojump.py::test_missing_dimensions PASSED [ 96%] 731s testsuite/MDAnalysisTests/transformations/test_nojump.py::test_notinvertible PASSED [ 96%] 731s testsuite/MDAnalysisTests/transformations/test_positionaveraging.py::test_posavging_fwd PASSED [ 96%] 731s testsuite/MDAnalysisTests/transformations/test_positionaveraging.py::test_posavging_bwd PASSED [ 96%] 731s testsuite/MDAnalysisTests/transformations/test_positionaveraging.py::test_posavging_reset PASSED [ 96%] 731s testsuite/MDAnalysisTests/transformations/test_positionaveraging.py::test_posavging_specific PASSED [ 96%] 731s testsuite/MDAnalysisTests/transformations/test_positionaveraging.py::test_posavging_specific_noreset PASSED [ 96%] 731s testsuite/MDAnalysisTests/transformations/test_rotate.py::test_rotation_matrix PASSED [ 96%] 731s testsuite/MDAnalysisTests/transformations/test_rotate.py::test_rotateby_custom_point[point0] PASSED [ 96%] 731s testsuite/MDAnalysisTests/transformations/test_rotate.py::test_rotateby_custom_point[point1] PASSED [ 96%] 731s testsuite/MDAnalysisTests/transformations/test_rotate.py::test_rotateby_vector[vector0] PASSED [ 96%] 731s testsuite/MDAnalysisTests/transformations/test_rotate.py::test_rotateby_vector[vector1] PASSED [ 96%] 731s testsuite/MDAnalysisTests/transformations/test_rotate.py::test_rotateby_atomgroup_cog_nopbc PASSED [ 96%] 731s testsuite/MDAnalysisTests/transformations/test_rotate.py::test_rotateby_atomgroup_com_nopbc PASSED [ 96%] 731s testsuite/MDAnalysisTests/transformations/test_rotate.py::test_rotateby_atomgroup_cog_pbc PASSED [ 96%] 731s testsuite/MDAnalysisTests/transformations/test_rotate.py::test_rotateby_atomgroup_com_pbc PASSED [ 96%] 731s testsuite/MDAnalysisTests/transformations/test_rotate.py::test_rotateby_bad_ag[ag0] PASSED [ 96%] 731s testsuite/MDAnalysisTests/transformations/test_rotate.py::test_rotateby_bad_ag[ag1] PASSED [ 96%] 731s testsuite/MDAnalysisTests/transformations/test_rotate.py::test_rotateby_bad_ag[ag2] PASSED [ 96%] 731s testsuite/MDAnalysisTests/transformations/test_rotate.py::test_rotateby_bad_ag[ag3] PASSED [ 96%] 731s testsuite/MDAnalysisTests/transformations/test_rotate.py::test_rotateby_bad_ag[ag4] PASSED [ 96%] 731s testsuite/MDAnalysisTests/transformations/test_rotate.py::test_rotateby_bad_ag[ag5] PASSED [ 96%] 731s testsuite/MDAnalysisTests/transformations/test_rotate.py::test_rotateby_bad_ag[thisisnotanag] PASSED [ 96%] 731s testsuite/MDAnalysisTests/transformations/test_rotate.py::test_rotateby_bad_ag[1] PASSED [ 96%] 731s testsuite/MDAnalysisTests/transformations/test_rotate.py::test_rotateby_bad_point[point0] PASSED [ 96%] 731s testsuite/MDAnalysisTests/transformations/test_rotate.py::test_rotateby_bad_point[point1] PASSED [ 96%] 731s testsuite/MDAnalysisTests/transformations/test_rotate.py::test_rotateby_bad_point[point2] PASSED [ 96%] 731s testsuite/MDAnalysisTests/transformations/test_rotate.py::test_rotateby_bad_point[point3] PASSED [ 96%] 731s testsuite/MDAnalysisTests/transformations/test_rotate.py::test_rotateby_bad_point[point4] PASSED [ 96%] 731s testsuite/MDAnalysisTests/transformations/test_rotate.py::test_rotateby_bad_point[point5] PASSED [ 96%] 731s testsuite/MDAnalysisTests/transformations/test_rotate.py::test_rotateby_bad_point[thisisnotapoint] PASSED [ 96%] 731s testsuite/MDAnalysisTests/transformations/test_rotate.py::test_rotateby_bad_point[1] PASSED [ 96%] 731s testsuite/MDAnalysisTests/transformations/test_rotate.py::test_rotateby_bad_direction[direction0] PASSED [ 96%] 731s testsuite/MDAnalysisTests/transformations/test_rotate.py::test_rotateby_bad_direction[direction1] PASSED [ 96%] 731s testsuite/MDAnalysisTests/transformations/test_rotate.py::test_rotateby_bad_direction[direction2] PASSED [ 96%] 731s testsuite/MDAnalysisTests/transformations/test_rotate.py::test_rotateby_bad_direction[direction3] PASSED [ 96%] 731s testsuite/MDAnalysisTests/transformations/test_rotate.py::test_rotateby_bad_direction[direction4] PASSED [ 96%] 731s testsuite/MDAnalysisTests/transformations/test_rotate.py::test_rotateby_bad_direction[direction5] PASSED [ 96%] 731s testsuite/MDAnalysisTests/transformations/test_rotate.py::test_rotateby_bad_direction[thisisnotadirection] PASSED [ 96%] 731s testsuite/MDAnalysisTests/transformations/test_rotate.py::test_rotateby_bad_direction[1] PASSED [ 96%] 731s testsuite/MDAnalysisTests/transformations/test_rotate.py::test_rotateby_bad_pbc PASSED [ 96%] 731s testsuite/MDAnalysisTests/transformations/test_rotate.py::test_rotateby_bad_weights[ ] PASSED [ 96%] 731s testsuite/MDAnalysisTests/transformations/test_rotate.py::test_rotateby_bad_weights[totallynotmasses] PASSED [ 96%] 731s testsuite/MDAnalysisTests/transformations/test_rotate.py::test_rotateby_bad_weights[123456789] PASSED [ 96%] 731s testsuite/MDAnalysisTests/transformations/test_rotate.py::test_rotateby_bad_weights[weights3] PASSED [ 96%] 731s testsuite/MDAnalysisTests/transformations/test_rotate.py::test_rotateby_bad_weights[weights4] PASSED [ 96%] 731s testsuite/MDAnalysisTests/transformations/test_rotate.py::test_rotateby_bad_weights[weights5] PASSED [ 96%] 731s testsuite/MDAnalysisTests/transformations/test_rotate.py::test_rotateby_bad_weights[weights6] PASSED [ 96%] 731s testsuite/MDAnalysisTests/transformations/test_rotate.py::test_rotateby_no_masses PASSED [ 96%] 731s testsuite/MDAnalysisTests/transformations/test_rotate.py::test_rotateby_no_args PASSED [ 96%] 731s testsuite/MDAnalysisTests/transformations/test_translate.py::test_translate_coords PASSED [ 96%] 731s testsuite/MDAnalysisTests/transformations/test_translate.py::test_translate_vector[vector0] PASSED [ 97%] 731s testsuite/MDAnalysisTests/transformations/test_translate.py::test_translate_vector[vector1] PASSED [ 97%] 731s testsuite/MDAnalysisTests/transformations/test_translate.py::test_translate_vector[vector2] PASSED [ 97%] 731s testsuite/MDAnalysisTests/transformations/test_translate.py::test_translate_vector[vector3] PASSED [ 97%] 731s testsuite/MDAnalysisTests/transformations/test_translate.py::test_translate_vector[vector4] PASSED [ 97%] 731s testsuite/MDAnalysisTests/transformations/test_translate.py::test_translate_vector[vector5] PASSED [ 97%] 731s testsuite/MDAnalysisTests/transformations/test_translate.py::test_translate_transformations_api PASSED [ 97%] 731s testsuite/MDAnalysisTests/transformations/test_translate.py::test_center_in_box_bad_ag PASSED [ 97%] 731s testsuite/MDAnalysisTests/transformations/test_translate.py::test_center_in_box_bad_point[point0] PASSED [ 97%] 731s testsuite/MDAnalysisTests/transformations/test_translate.py::test_center_in_box_bad_point[point1] PASSED [ 97%] 731s testsuite/MDAnalysisTests/transformations/test_translate.py::test_center_in_box_bad_point[point2] PASSED [ 97%] 731s testsuite/MDAnalysisTests/transformations/test_translate.py::test_center_in_box_bad_point[point3] PASSED [ 97%] 731s testsuite/MDAnalysisTests/transformations/test_translate.py::test_center_in_box_bad_point[point4] PASSED [ 97%] 731s testsuite/MDAnalysisTests/transformations/test_translate.py::test_center_in_box_bad_point[point5] PASSED [ 97%] 731s testsuite/MDAnalysisTests/transformations/test_translate.py::test_center_in_box_bad_pbc PASSED [ 97%] 731s testsuite/MDAnalysisTests/transformations/test_translate.py::test_center_in_box_bad_center PASSED [ 97%] 731s testsuite/MDAnalysisTests/transformations/test_translate.py::test_center_in_box_no_masses PASSED [ 97%] 731s testsuite/MDAnalysisTests/transformations/test_translate.py::test_center_in_box_coords_no_options PASSED [ 97%] 731s testsuite/MDAnalysisTests/transformations/test_translate.py::test_center_in_box_coords_with_pbc PASSED [ 97%] 731s testsuite/MDAnalysisTests/transformations/test_translate.py::test_center_in_box_coords_with_mass PASSED [ 97%] 731s testsuite/MDAnalysisTests/transformations/test_translate.py::test_center_in_box_coords_with_box PASSED [ 97%] 731s testsuite/MDAnalysisTests/transformations/test_translate.py::test_center_in_box_coords_all_options PASSED [ 97%] 731s testsuite/MDAnalysisTests/transformations/test_translate.py::test_center_transformations_api PASSED [ 97%] 731s testsuite/MDAnalysisTests/transformations/test_wrap.py::test_wrap_bad_ag[ag0] PASSED [ 97%] 731s testsuite/MDAnalysisTests/transformations/test_wrap.py::test_wrap_bad_ag[ag1] PASSED [ 97%] 731s testsuite/MDAnalysisTests/transformations/test_wrap.py::test_wrap_bad_ag[ag2] PASSED [ 97%] 731s testsuite/MDAnalysisTests/transformations/test_wrap.py::test_wrap_bad_ag[ag3] PASSED [ 97%] 731s testsuite/MDAnalysisTests/transformations/test_wrap.py::test_wrap_bad_ag[ag4] PASSED [ 97%] 731s testsuite/MDAnalysisTests/transformations/test_wrap.py::test_wrap_bad_ag[ag5] PASSED [ 97%] 731s testsuite/MDAnalysisTests/transformations/test_wrap.py::test_wrap_bad_ag[thisisnotanag] PASSED [ 97%] 731s testsuite/MDAnalysisTests/transformations/test_wrap.py::test_wrap_bad_ag[1] PASSED [ 97%] 731s testsuite/MDAnalysisTests/transformations/test_wrap.py::test_wrap_no_options PASSED [ 97%] 733s testsuite/MDAnalysisTests/transformations/test_wrap.py::test_wrap_with_compounds[group] PASSED [ 97%] 735s testsuite/MDAnalysisTests/transformations/test_wrap.py::test_wrap_with_compounds[residues] PASSED [ 97%] 736s testsuite/MDAnalysisTests/transformations/test_wrap.py::test_wrap_with_compounds[segments] PASSED [ 97%] 739s testsuite/MDAnalysisTests/transformations/test_wrap.py::test_wrap_with_compounds[fragments] PASSED [ 97%] 739s testsuite/MDAnalysisTests/transformations/test_wrap.py::test_wrap_api PASSED [ 97%] 739s testsuite/MDAnalysisTests/transformations/test_wrap.py::test_unwrap_bad_ag[ag0] PASSED [ 97%] 739s testsuite/MDAnalysisTests/transformations/test_wrap.py::test_unwrap_bad_ag[ag1] PASSED [ 97%] 739s testsuite/MDAnalysisTests/transformations/test_wrap.py::test_unwrap_bad_ag[ag2] PASSED [ 97%] 739s testsuite/MDAnalysisTests/transformations/test_wrap.py::test_unwrap_bad_ag[ag3] PASSED [ 97%] 739s testsuite/MDAnalysisTests/transformations/test_wrap.py::test_unwrap_bad_ag[ag4] PASSED [ 97%] 739s testsuite/MDAnalysisTests/transformations/test_wrap.py::test_unwrap_bad_ag[ag5] PASSED [ 97%] 739s testsuite/MDAnalysisTests/transformations/test_wrap.py::test_unwrap_bad_ag[thisisnotanag] PASSED [ 97%] 739s testsuite/MDAnalysisTests/transformations/test_wrap.py::test_unwrap_bad_ag[1] PASSED [ 97%] 739s testsuite/MDAnalysisTests/transformations/test_wrap.py::test_unwrap PASSED [ 97%] 739s testsuite/MDAnalysisTests/transformations/test_wrap.py::test_unwrap_api PASSED [ 97%] 739s testsuite/MDAnalysisTests/utils/test_authors.py::test_package_authors PASSED [ 97%] 739s testsuite/MDAnalysisTests/utils/test_datafiles.py::test_failed_import PASSED [ 97%] 739s testsuite/MDAnalysisTests/utils/test_datafiles.py::test_import PASSED [ 97%] 739s testsuite/MDAnalysisTests/utils/test_datafiles.py::test_all_exports PASSED [ 97%] 739s testsuite/MDAnalysisTests/utils/test_datafiles.py::test_export_variables PASSED [ 97%] 739s testsuite/MDAnalysisTests/utils/test_duecredit.py::TestDuecredit::test_duecredit_active PASSED [ 97%] 739s testsuite/MDAnalysisTests/utils/test_duecredit.py::TestDuecredit::test_duecredit_collector_primary[MDAnalysis-MDAnalysis-10.25080/majora-629e541a-00e] PASSED [ 97%] 739s testsuite/MDAnalysisTests/utils/test_duecredit.py::TestDuecredit::test_duecredit_collector_primary[MDAnalysis-MDAnalysis-10.1002/jcc.21787] PASSED [ 97%] 739s testsuite/MDAnalysisTests/utils/test_duecredit.py::TestDuecredit::test_duecredit_collector_analysis_modules[MDAnalysis.analysis.psa-MDAnalysis.analysis.psa-10.1371/journal.pcbi.1004568] PASSED [ 97%] 739s testsuite/MDAnalysisTests/utils/test_duecredit.py::TestDuecredit::test_duecredit_collector_analysis_modules[MDAnalysis.analysis.hydrogenbonds.hbond_autocorrel-MDAnalysis.analysis.hydrogenbonds.hbond_autocorrel-10.1063/1.4922445] PASSED [ 97%] 739s testsuite/MDAnalysisTests/utils/test_duecredit.py::TestDuecredit::test_duecredit_collector_analysis_modules[MDAnalysis.analysis.leaflet-MDAnalysis.analysis.leaflet-10.1002/jcc.21787] PASSED [ 97%] 739s testsuite/MDAnalysisTests/utils/test_duecredit.py::TestDuecredit::test_duecredit_collector_analysis_modules[MDAnalysis.analysis.hole2-MDAnalysis.analysis.hole2-10.1016/s0006-3495(93)81293-1] PASSED [ 97%] 739s testsuite/MDAnalysisTests/utils/test_duecredit.py::TestDuecredit::test_duecredit_collector_analysis_modules[MDAnalysis.analysis.hole2-MDAnalysis.analysis.hole2-10.1016/s0263-7855(97)00009-x] PASSED [ 97%] 739s testsuite/MDAnalysisTests/utils/test_duecredit.py::TestDuecredit::test_duecredit_collector_analysis_modules[MDAnalysis.analysis.hole2-MDAnalysis.analysis.hole2-10.1016/j.jmb.2013.10.024] PASSED [ 97%] 739s testsuite/MDAnalysisTests/utils/test_duecredit.py::TestDuecredit::test_duecredit_collector_analysis_modules[MDAnalysis.lib.qcprot-MDAnalysis.lib.qcprot-10.1107/s0108767305015266] PASSED [ 97%] 739s testsuite/MDAnalysisTests/utils/test_duecredit.py::TestDuecredit::test_duecredit_collector_analysis_modules[MDAnalysis.lib.qcprot-MDAnalysis.lib.qcprot-qcprot2] PASSED [ 97%] 739s testsuite/MDAnalysisTests/utils/test_duecredit.py::TestDuecredit::test_duecredit_collector_analysis_modules[MDAnalysis.analysis.encore-MDAnalysis.analysis.encore-10.1371/journal.pcbi.1004415] PASSED [ 97%] 739s testsuite/MDAnalysisTests/utils/test_duecredit.py::TestDuecredit::test_duecredit_mmtf PASSED [ 97%] 740s testsuite/MDAnalysisTests/utils/test_duecredit.py::TestDuecredit::test_duecredit_h5md PASSED [ 97%] 740s testsuite/MDAnalysisTests/utils/test_failure.py::test_failure PASSED [ 97%] 740s testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/test_api.py] PASSED [ 97%] 740s testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/util.py] PASSED [ 97%] 740s testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/datafiles.py] PASSED [ 97%] 740s testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/__init__.py] PASSED [ 97%] 740s testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/dummy.py] PASSED [ 97%] 740s testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/core/test_group_traj_access.py] PASSED [ 97%] 740s testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/core/test_segment.py] PASSED [ 97%] 740s testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/core/test_topology.py] PASSED [ 97%] 740s testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/core/test_index_dtype.py] PASSED [ 97%] 740s testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/core/test_fragments.py] PASSED [ 97%] 740s testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/core/util.py] PASSED [ 97%] 740s testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/core/test_groups.py] PASSED [ 97%] 740s testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/core/test_residuegroup.py] PASSED [ 97%] 740s testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/core/test_requires.py] PASSED [ 97%] 740s testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/core/test_segmentgroup.py] PASSED [ 97%] 740s testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/core/test_unwrap.py] PASSED [ 97%] 740s testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/core/test_atomselections.py] PASSED [ 97%] 740s testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/core/test_residue.py] PASSED [ 97%] 740s testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/core/__init__.py] PASSED [ 97%] 740s testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/core/test_topologyattrs.py] PASSED [ 97%] 740s testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/core/test_atomgroup.py] PASSED [ 97%] 740s testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/core/test_accumulate.py] PASSED [ 97%] 740s testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/core/test_atom.py] PASSED [ 97%] 740s testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/core/test_universe.py] PASSED [ 97%] 740s testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/core/test_wrap.py] PASSED [ 97%] 740s testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/core/test_updating_atomgroup.py] PASSED [ 97%] 740s testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/core/test_accessors.py] PASSED [ 97%] 740s testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/core/test_topologyobjects.py] PASSED [ 97%] 740s testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/core/test_copying.py] PASSED [ 97%] 740s testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/coordinates/create_h5md_data.py] PASSED [ 97%] 740s testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/coordinates/create_data.py] PASSED [ 97%] 740s testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/import/fork_called.py] PASSED [ 97%] 740s testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/import/__init__.py] PASSED [ 97%] 740s testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/import/test_import.py] PASSED [ 97%] 740s testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/lib/test_pkdtree.py] PASSED [ 97%] 740s testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/lib/test_util.py] PASSED [ 97%] 740s testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/lib/test_cutil.py] PASSED [ 97%] 740s testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/lib/__init__.py] PASSED [ 97%] 740s testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/lib/test_qcprot.py] PASSED [ 97%] 740s testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/lib/test_distances.py] PASSED [ 97%] 740s testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/lib/test_nsgrid.py] PASSED [ 97%] 740s testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/lib/test_augment.py] PASSED [ 97%] 740s testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/lib/test_log.py] PASSED [ 97%] 740s testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/lib/test_neighborsearch.py] PASSED [ 97%] 740s testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/formats/__init__.py] PASSED [ 97%] 740s testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/formats/test_libmdaxdr.py] PASSED [ 97%] 740s testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/formats/test_libdcd.py] PASSED [ 97%] 740s testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/coordinates/test_tng.py] PASSED [ 97%] 740s testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/coordinates/test_dms.py] PASSED [ 97%] 740s testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/coordinates/reference.py] PASSED [ 97%] 740s testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/coordinates/test_dlpoly.py] PASSED [ 97%] 740s testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/coordinates/test_crd.py] PASSED [ 97%] 740s testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/coordinates/test_writer_api.py] PASSED [ 97%] 740s testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/coordinates/test_amber_inpcrd.py] PASSED [ 97%] 740s testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/coordinates/test_txyz.py] PASSED [ 97%] 740s testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/coordinates/test_gsd.py] PASSED [ 97%] 740s testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/coordinates/test_windows.py] PASSED [ 97%] 740s testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/coordinates/test_pdbqt.py] PASSED [ 97%] 740s testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/coordinates/test_pdb.py] PASSED [ 97%] 740s testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/coordinates/test_gro.py] PASSED [ 97%] 740s testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/coordinates/test_trc.py] PASSED [ 97%] 740s testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/coordinates/test_netcdf.py] PASSED [ 97%] 740s testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/coordinates/test_reader_api.py] PASSED [ 97%] 740s testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/coordinates/base.py] PASSED [ 97%] 740s testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/coordinates/test_fhiaims.py] PASSED [ 97%] 740s testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/coordinates/test_memory.py] PASSED [ 97%] 740s testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/coordinates/__init__.py] PASSED [ 97%] 740s testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/coordinates/test_chainreader.py] PASSED [ 97%] 740s testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/coordinates/test_trj.py] PASSED [ 97%] 740s testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/coordinates/test_null.py] PASSED [ 97%] 740s testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/coordinates/test_gms.py] PASSED [ 97%] 740s testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/coordinates/test_pqr.py] PASSED [ 97%] 740s testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/coordinates/test_chemfiles.py] PASSED [ 97%] 740s testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/coordinates/test_writer_registration.py] PASSED [ 97%] 740s testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/coordinates/test_h5md.py] PASSED [ 97%] 740s testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/coordinates/test_trz.py] PASSED [ 97%] 740s testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/coordinates/test_copying.py] PASSED [ 97%] 740s testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/coordinates/test_lammps.py] PASSED [ 97%] 740s testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/coordinates/test_mmtf.py] PASSED [ 97%] 740s testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/coordinates/test_dcd.py] PASSED [ 97%] 740s testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/coordinates/test_xyz.py] PASSED [ 97%] 740s testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/coordinates/test_mol2.py] PASSED [ 97%] 740s testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/coordinates/test_xdr.py] PASSED [ 97%] 740s testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/analysis/test_align.py] PASSED [ 97%] 740s testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/analysis/test_lineardensity.py] PASSED [ 97%] 740s testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/analysis/test_hydrogenbondautocorrel.py] PASSED [ 97%] 740s testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/analysis/test_base.py] PASSED [ 97%] 740s testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/analysis/test_rdf_s.py] PASSED [ 97%] 740s testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/analysis/test_hydrogenbonds_analysis.py] PASSED [ 97%] 740s testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/analysis/test_encore.py] PASSED [ 97%] 740s testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/analysis/test_persistencelength.py] PASSED [ 97%] 740s testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/analysis/test_gnm.py] PASSED [ 97%] 740s testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/analysis/test_dihedrals.py] PASSED [ 97%] 740s testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/analysis/test_wbridge.py] PASSED [ 97%] 740s testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/analysis/test_bat.py] PASSED [ 97%] 740s testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/analysis/test_pca.py] PASSED [ 97%] 740s testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/analysis/test_contacts.py] PASSED [ 97%] 740s testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/analysis/__init__.py] PASSED [ 97%] 740s testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/analysis/test_hydrogenbondautocorrel_deprecated.py] PASSED [ 97%] 740s testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/analysis/test_psa.py] PASSED [ 97%] 740s testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/analysis/test_nucleicacids.py] PASSED [ 97%] 740s testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/analysis/test_data.py] PASSED [ 97%] 740s testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/analysis/test_rms.py] PASSED [ 97%] 740s testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/analysis/test_msd.py] PASSED [ 97%] 740s testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/analysis/test_nuclinfo.py] PASSED [ 97%] 740s testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/analysis/test_leaflet.py] PASSED [ 97%] 740s testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/analysis/test_diffusionmap.py] PASSED [ 97%] 740s testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/analysis/test_waterdynamics.py] PASSED [ 97%] 740s testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/analysis/test_rdf.py] PASSED [ 97%] 740s testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/analysis/test_dielectric.py] PASSED [ 97%] 740s testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/analysis/test_atomicdistances.py] PASSED [ 97%] 740s testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/analysis/test_hole2.py] PASSED [ 97%] 740s testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/analysis/test_distances.py] PASSED [ 97%] 740s testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/analysis/test_helix_analysis.py] PASSED [ 97%] 740s testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/analysis/test_density.py] PASSED [ 97%] 740s testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/transformations/test_positionaveraging.py] PASSED [ 97%] 740s testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/transformations/test_base.py] PASSED [ 97%] 740s testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/transformations/test_boxdimensions.py] PASSED [ 98%] 740s testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/transformations/test_rotate.py] PASSED [ 98%] 740s testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/transformations/__init__.py] PASSED [ 98%] 740s testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/transformations/test_wrap.py] PASSED [ 98%] 740s testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/transformations/test_translate.py] PASSED [ 98%] 740s testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/transformations/test_nojump.py] PASSED [ 98%] 740s testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/transformations/test_fit.py] PASSED [ 98%] 740s testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/utils/test_units.py] PASSED [ 98%] 740s testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/utils/test_persistence.py] PASSED [ 98%] 740s testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/utils/test_authors.py] PASSED [ 98%] 740s testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/utils/test_failure.py] PASSED [ 98%] 740s testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/utils/test_meta.py] PASSED [ 98%] 740s testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/utils/test_datafiles.py] PASSED [ 98%] 740s testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/utils/test_streamio.py] PASSED [ 98%] 740s testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/utils/__init__.py] PASSED [ 98%] 740s testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/utils/test_selections.py] PASSED [ 98%] 740s testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/utils/test_pickleio.py] PASSED [ 98%] 740s testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/utils/test_imports.py] PASSED [ 98%] 740s testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/utils/test_qcprot.py] PASSED [ 98%] 740s testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/utils/test_transformations.py] PASSED [ 98%] 740s testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/utils/test_duecredit.py] PASSED [ 98%] 740s testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/utils/test_log.py] PASSED [ 98%] 740s testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/utils/test_modelling.py] PASSED [ 98%] 740s testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/auxiliary/test_edr.py] PASSED [ 98%] 740s testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/auxiliary/test_core.py] PASSED [ 98%] 740s testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/auxiliary/base.py] PASSED [ 98%] 740s testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/auxiliary/__init__.py] PASSED [ 98%] 740s testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/auxiliary/test_xvg.py] PASSED [ 98%] 740s testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/topology/test_dms.py] PASSED [ 98%] 740s testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/topology/test_top.py] PASSED [ 98%] 740s testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/topology/test_hoomdxml.py] PASSED [ 98%] 740s testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/topology/test_dlpoly.py] PASSED [ 98%] 740s testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/topology/test_crd.py] PASSED [ 98%] 740s testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/topology/test_txyz.py] PASSED [ 98%] 740s testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/topology/test_gsd.py] PASSED [ 98%] 740s testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/topology/test_itp.py] PASSED [ 98%] 740s testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/topology/test_pdbqt.py] PASSED [ 98%] 740s testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/topology/test_pdb.py] PASSED [ 98%] 740s testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/topology/test_gro.py] PASSED [ 98%] 740s testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/topology/test_psf.py] PASSED [ 98%] 740s testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/topology/base.py] PASSED [ 98%] 740s testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/topology/test_minimal.py] PASSED [ 98%] 740s testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/topology/test_fhiaims.py] PASSED [ 98%] 740s testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/topology/test_altloc.py] PASSED [ 98%] 740s testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/topology/__init__.py] PASSED [ 98%] 740s testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/topology/test_guessers.py] PASSED [ 98%] 740s testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/topology/test_gms.py] PASSED [ 98%] 740s testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/topology/test_lammpsdata.py] PASSED [ 98%] 740s testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/topology/test_pqr.py] PASSED [ 98%] 740s testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/topology/test_topology_str_types.py] PASSED [ 98%] 740s testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/topology/test_mmtf.py] PASSED [ 98%] 740s testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/topology/test_xpdb.py] PASSED [ 98%] 740s testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/topology/test_xyz.py] PASSED [ 98%] 740s testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/topology/test_mol2.py] PASSED [ 98%] 740s testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/topology/test_topology_base.py] PASSED [ 98%] 740s testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/topology/test_tprparser.py] PASSED [ 98%] 740s testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/parallelism/test_multiprocessing.py] PASSED [ 98%] 740s testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/parallelism/test_pickle_transformation.py] PASSED [ 98%] 740s testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/visualization/__init__.py] PASSED [ 98%] 740s testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/visualization/test_streamlines.py] PASSED [ 98%] 740s testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/converters/test_base.py] PASSED [ 98%] 740s testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/converters/test_rdkit_parser.py] PASSED [ 98%] 740s testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/converters/test_openmm_parser.py] PASSED [ 98%] 740s testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/converters/test_parmed.py] PASSED [ 98%] 740s testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/converters/__init__.py] PASSED [ 98%] 740s testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/converters/test_parmed_parser.py] PASSED [ 98%] 740s testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/converters/test_openmm.py] PASSED [ 98%] 740s testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/converters/test_rdkit.py] PASSED [ 98%] 740s testsuite/MDAnalysisTests/utils/test_log.py::test_start_stop_logging PASSED [ 98%] 740s testsuite/MDAnalysisTests/utils/test_meta.py::test_import PASSED [ 98%] 740s testsuite/MDAnalysisTests/utils/test_meta.py::test_matching_versions PASSED [ 98%] 740s testsuite/MDAnalysisTests/utils/test_meta.py::test_version_format PASSED [ 98%] 740s testsuite/MDAnalysisTests/utils/test_meta.py::test_version_at_packagelevel PASSED [ 98%] 740s testsuite/MDAnalysisTests/utils/test_modelling.py::TestCapping::test_capping_file PASSED [ 98%] 740s testsuite/MDAnalysisTests/utils/test_modelling.py::TestCapping::test_capping_inmemory PASSED [ 98%] 740s testsuite/MDAnalysisTests/utils/test_modelling.py::TestMerge::test_merge PASSED [ 98%] 740s testsuite/MDAnalysisTests/utils/test_modelling.py::TestMerge::test_merge_same_universe PASSED [ 98%] 740s testsuite/MDAnalysisTests/utils/test_modelling.py::TestMerge::test_residue_references PASSED [ 98%] 740s testsuite/MDAnalysisTests/utils/test_modelling.py::TestMerge::test_segment_references PASSED [ 98%] 740s testsuite/MDAnalysisTests/utils/test_modelling.py::TestMerge::test_empty_ValueError PASSED [ 98%] 740s testsuite/MDAnalysisTests/utils/test_modelling.py::TestMerge::test_nonsense_TypeError PASSED [ 98%] 740s testsuite/MDAnalysisTests/utils/test_modelling.py::TestMerge::test_emptyAG_ValueError PASSED [ 98%] 740s testsuite/MDAnalysisTests/utils/test_modelling.py::TestMerge::test_merge_without_coords PASSED [ 98%] 740s testsuite/MDAnalysisTests/utils/test_modelling.py::TestMergeTopology::test_merge_with_topology PASSED [ 98%] 741s testsuite/MDAnalysisTests/utils/test_modelling.py::TestMergeTopology::test_merge_with_topology_from_different_universes PASSED [ 98%] 741s testsuite/MDAnalysisTests/utils/test_modelling.py::TestMergeTopology::test_merge_without_topology PASSED [ 98%] 741s testsuite/MDAnalysisTests/utils/test_persistence.py::TestAtomGroupPickle::test_unpickle PASSED [ 98%] 741s testsuite/MDAnalysisTests/utils/test_persistence.py::TestAtomGroupPickle::test_pickle_unpickle_empty PASSED [ 98%] 741s testsuite/MDAnalysisTests/utils/test_persistence.py::TestAtomGroupPickle::test_unpickle_two_ag PASSED [ 98%] 741s testsuite/MDAnalysisTests/utils/test_persistence.py::TestAtomGroupPickle::test_unpickle_ag_with_universe_f PASSED [ 98%] 741s testsuite/MDAnalysisTests/utils/test_persistence.py::TestAtomGroupPickle::test_unpickle_ag_with_universe PASSED [ 98%] 741s testsuite/MDAnalysisTests/utils/test_persistence.py::TestPicklingUpdatingAtomGroups::test_pickling_uag PASSED [ 98%] 741s testsuite/MDAnalysisTests/utils/test_persistence.py::TestPicklingUpdatingAtomGroups::test_pickling_uag_of_uag PASSED [ 98%] 741s testsuite/MDAnalysisTests/utils/test_pickleio.py::test_get_right_open_handler_text[f_text0] PASSED [ 98%] 741s testsuite/MDAnalysisTests/utils/test_pickleio.py::test_get_right_open_handler_text[f_text1] PASSED [ 98%] 741s testsuite/MDAnalysisTests/utils/test_pickleio.py::test_get_right_open_handler_text[f_text2] PASSED [ 98%] 741s testsuite/MDAnalysisTests/utils/test_pickleio.py::test_get_right_open_handler_text[f_text3] PASSED [ 98%] 742s testsuite/MDAnalysisTests/utils/test_pickleio.py::test_iopickle_text[f_text0] PASSED [ 98%] 742s testsuite/MDAnalysisTests/utils/test_pickleio.py::test_iopickle_text[f_text1] PASSED [ 98%] 743s testsuite/MDAnalysisTests/utils/test_pickleio.py::test_iopickle_text[f_text2] PASSED [ 98%] 743s testsuite/MDAnalysisTests/utils/test_pickleio.py::test_iopickle_text[f_text3] PASSED [ 98%] 743s testsuite/MDAnalysisTests/utils/test_pickleio.py::test_offset_text_to_0[f_text0] PASSED [ 98%] 743s testsuite/MDAnalysisTests/utils/test_pickleio.py::test_offset_text_to_0[f_text1] PASSED [ 98%] 743s testsuite/MDAnalysisTests/utils/test_pickleio.py::test_offset_text_to_0[f_text2] PASSED [ 98%] 743s testsuite/MDAnalysisTests/utils/test_pickleio.py::test_offset_text_to_0[f_text3] PASSED [ 98%] 743s testsuite/MDAnalysisTests/utils/test_pickleio.py::test_get_right_open_handler_byte[f_byte0] PASSED [ 98%] 743s testsuite/MDAnalysisTests/utils/test_pickleio.py::test_get_right_open_handler_byte[f_byte1] PASSED [ 98%] 743s testsuite/MDAnalysisTests/utils/test_pickleio.py::test_get_right_open_handler_byte[f_byte2] PASSED [ 98%] 744s testsuite/MDAnalysisTests/utils/test_pickleio.py::test_iopickle_byte[f_byte0] PASSED [ 98%] 745s testsuite/MDAnalysisTests/utils/test_pickleio.py::test_iopickle_byte[f_byte1] PASSED [ 98%] 745s testsuite/MDAnalysisTests/utils/test_pickleio.py::test_iopickle_byte[f_byte2] PASSED [ 98%] 745s testsuite/MDAnalysisTests/utils/test_pickleio.py::test_offset_byte_to_tell[f_byte0] PASSED [ 98%] 745s testsuite/MDAnalysisTests/utils/test_pickleio.py::test_offset_byte_to_tell[f_byte1] PASSED [ 98%] 745s testsuite/MDAnalysisTests/utils/test_pickleio.py::test_offset_byte_to_tell[f_byte2] PASSED [ 98%] 745s testsuite/MDAnalysisTests/utils/test_pickleio.py::test_context_manager_pickle PASSED [ 98%] 749s testsuite/MDAnalysisTests/utils/test_pickleio.py::test_fileio_pickle PASSED [ 98%] 749s testsuite/MDAnalysisTests/utils/test_pickleio.py::test_unpicklable_open_mode[unpicklable_f0] PASSED [ 98%] 749s testsuite/MDAnalysisTests/utils/test_pickleio.py::test_unpicklable_open_mode[unpicklable_f1] PASSED [ 98%] 749s testsuite/MDAnalysisTests/utils/test_pickleio.py::test_unpicklable_open_mode[unpicklable_f2] PASSED [ 98%] 749s testsuite/MDAnalysisTests/utils/test_pickleio.py::test_unpicklable_open_mode[unpicklable_f3] PASSED [ 98%] 749s testsuite/MDAnalysisTests/utils/test_pickleio.py::test_unpicklable_open_mode[unpicklable_f4] PASSED [ 98%] 749s testsuite/MDAnalysisTests/utils/test_pickleio.py::test_pickle_with_write_mode[unpicklable_f0] PASSED [ 98%] 749s testsuite/MDAnalysisTests/utils/test_pickleio.py::test_pickle_with_write_mode[unpicklable_f1] PASSED [ 98%] 749s testsuite/MDAnalysisTests/utils/test_pickleio.py::test_pickle_with_write_mode[unpicklable_f2] PASSED [ 98%] 749s testsuite/MDAnalysisTests/utils/test_pickleio.py::test_pickle_with_write_mode[unpicklable_f3] PASSED [ 98%] 749s testsuite/MDAnalysisTests/utils/test_pickleio.py::test_pickle_with_write_mode[unpicklable_f4] PASSED [ 98%] 749s testsuite/MDAnalysisTests/utils/test_pickleio.py::test_GSD_pickle SKIPPED [ 98%] 749s testsuite/MDAnalysisTests/utils/test_pickleio.py::test_GSD_with_write_mode SKIPPED [ 98%] 749s testsuite/MDAnalysisTests/utils/test_pickleio.py::test_NCDF_pickle PASSED [ 98%] 749s testsuite/MDAnalysisTests/utils/test_pickleio.py::test_NCDF_mmap_pickle PASSED [ 98%] 749s testsuite/MDAnalysisTests/utils/test_pickleio.py::test_Chemfiles_pickle SKIPPED [ 98%] 749s testsuite/MDAnalysisTests/utils/test_pickleio.py::test_Chemfiles_with_write_mode SKIPPED [ 98%] 749s testsuite/MDAnalysisTests/utils/test_pickleio.py::test_H5MD_pickle PASSED [ 98%] 749s testsuite/MDAnalysisTests/utils/test_pickleio.py::test_H5MD_pickle_with_driver PASSED [ 98%] 749s testsuite/MDAnalysisTests/utils/test_qcprot.py::test_CalcRMSDRotationalMatrix PASSED [ 98%] 749s testsuite/MDAnalysisTests/utils/test_qcprot.py::test_innerproduct PASSED [ 98%] 749s testsuite/MDAnalysisTests/utils/test_qcprot.py::test_weights PASSED [ 98%] 749s testsuite/MDAnalysisTests/utils/test_selections.py::TestSelectionWriter_Gromacs::test_write_bad_mode PASSED [ 98%] 749s testsuite/MDAnalysisTests/utils/test_selections.py::TestSelectionWriter_Gromacs::test_write PASSED [ 98%] 749s testsuite/MDAnalysisTests/utils/test_selections.py::TestSelectionWriter_Gromacs::test_writeselection PASSED [ 98%] 749s testsuite/MDAnalysisTests/utils/test_selections.py::TestSelectionWriter_Gromacs::test_write_with PASSED [ 98%] 749s testsuite/MDAnalysisTests/utils/test_selections.py::TestSelectionWriter_Charmm::test_write_bad_mode PASSED [ 98%] 749s testsuite/MDAnalysisTests/utils/test_selections.py::TestSelectionWriter_Charmm::test_write PASSED [ 98%] 749s testsuite/MDAnalysisTests/utils/test_selections.py::TestSelectionWriter_Charmm::test_writeselection PASSED [ 98%] 749s testsuite/MDAnalysisTests/utils/test_selections.py::TestSelectionWriter_Charmm::test_write_with PASSED [ 98%] 749s testsuite/MDAnalysisTests/utils/test_selections.py::TestSelectionWriter_PyMOL::test_write_bad_mode PASSED [ 98%] 749s testsuite/MDAnalysisTests/utils/test_selections.py::TestSelectionWriter_PyMOL::test_write PASSED [ 98%] 749s testsuite/MDAnalysisTests/utils/test_selections.py::TestSelectionWriter_PyMOL::test_writeselection PASSED [ 98%] 749s testsuite/MDAnalysisTests/utils/test_selections.py::TestSelectionWriter_PyMOL::test_write_with PASSED [ 98%] 750s testsuite/MDAnalysisTests/utils/test_selections.py::TestSelectionWriter_VMD::test_write_bad_mode PASSED [ 98%] 750s testsuite/MDAnalysisTests/utils/test_selections.py::TestSelectionWriter_VMD::test_write PASSED [ 98%] 750s testsuite/MDAnalysisTests/utils/test_selections.py::TestSelectionWriter_VMD::test_writeselection PASSED [ 98%] 750s testsuite/MDAnalysisTests/utils/test_selections.py::TestSelectionWriter_VMD::test_write_with PASSED [ 98%] 750s testsuite/MDAnalysisTests/utils/test_selections.py::TestSelectionWriter_Jmol::test_write_bad_mode PASSED [ 98%] 750s testsuite/MDAnalysisTests/utils/test_selections.py::TestSelectionWriter_Jmol::test_write PASSED [ 98%] 750s testsuite/MDAnalysisTests/utils/test_selections.py::TestSelectionWriter_Jmol::test_writeselection PASSED [ 98%] 750s testsuite/MDAnalysisTests/utils/test_selections.py::TestSelectionWriter_Jmol::test_write_with PASSED [ 98%] 750s testsuite/MDAnalysisTests/utils/test_selections.py::TestSelections::test_get_writer_valid PASSED [ 98%] 750s testsuite/MDAnalysisTests/utils/test_streamio.py::TestIsstream::test_hasmethod PASSED [ 98%] 750s testsuite/MDAnalysisTests/utils/test_streamio.py::TestIsstream::test_string PASSED [ 98%] 750s testsuite/MDAnalysisTests/utils/test_streamio.py::TestIsstream::test_list PASSED [ 98%] 750s testsuite/MDAnalysisTests/utils/test_streamio.py::TestIsstream::test_file PASSED [ 98%] 750s testsuite/MDAnalysisTests/utils/test_streamio.py::TestIsstream::test_StringIO_read PASSED [ 98%] 750s testsuite/MDAnalysisTests/utils/test_streamio.py::TestIsstream::test_StringIO_write PASSED [ 98%] 750s testsuite/MDAnalysisTests/utils/test_streamio.py::TestNamedStream::test_closing PASSED [ 98%] 750s testsuite/MDAnalysisTests/utils/test_streamio.py::TestNamedStream::test_closing_force PASSED [ 98%] 750s testsuite/MDAnalysisTests/utils/test_streamio.py::TestNamedStream::test_StringIO_read PASSED [ 98%] 750s testsuite/MDAnalysisTests/utils/test_streamio.py::TestNamedStream::test_File_read PASSED [ 98%] 750s testsuite/MDAnalysisTests/utils/test_streamio.py::TestNamedStream::test_StringIO_write PASSED [ 98%] 750s testsuite/MDAnalysisTests/utils/test_streamio.py::TestNamedStream::test_File_write PASSED [ 98%] 750s testsuite/MDAnalysisTests/utils/test_streamio.py::TestNamedStream::test_matryoshka PASSED [ 98%] 750s testsuite/MDAnalysisTests/utils/test_streamio.py::TestNamedStream_filename_behavior::test_func[abspath] PASSED [ 98%] 750s testsuite/MDAnalysisTests/utils/test_streamio.py::TestNamedStream_filename_behavior::test_func[basename] PASSED [ 98%] 750s testsuite/MDAnalysisTests/utils/test_streamio.py::TestNamedStream_filename_behavior::test_func[dirname] PASSED [ 98%] 750s testsuite/MDAnalysisTests/utils/test_streamio.py::TestNamedStream_filename_behavior::test_func[expanduser] PASSED [ 98%] 750s testsuite/MDAnalysisTests/utils/test_streamio.py::TestNamedStream_filename_behavior::test_func[_path_normpath] PASSED [ 98%] 750s testsuite/MDAnalysisTests/utils/test_streamio.py::TestNamedStream_filename_behavior::test_func[relpath] PASSED [ 98%] 750s testsuite/MDAnalysisTests/utils/test_streamio.py::TestNamedStream_filename_behavior::test_func[split] PASSED [ 98%] 750s testsuite/MDAnalysisTests/utils/test_streamio.py::TestNamedStream_filename_behavior::test_func[splitext] PASSED [ 98%] 750s testsuite/MDAnalysisTests/utils/test_streamio.py::TestNamedStream_filename_behavior::test_join PASSED [ 98%] 750s testsuite/MDAnalysisTests/utils/test_streamio.py::TestNamedStream_filename_behavior::test_expanduser_noexpansion_returns_NamedStream PASSED [ 98%] 750s testsuite/MDAnalysisTests/utils/test_streamio.py::TestNamedStream_filename_behavior::test_expandvars PASSED [ 98%] 750s testsuite/MDAnalysisTests/utils/test_streamio.py::TestNamedStream_filename_behavior::test_expandvars_noexpansion_returns_NamedStream PASSED [ 98%] 750s testsuite/MDAnalysisTests/utils/test_streamio.py::TestNamedStream_filename_behavior::test_add PASSED [ 98%] 750s testsuite/MDAnalysisTests/utils/test_streamio.py::TestNamedStream_filename_behavior::test_radd PASSED [ 99%] 750s testsuite/MDAnalysisTests/utils/test_streamio.py::TestStreamIO::test_PrimitivePDBReader PASSED [ 99%] 750s testsuite/MDAnalysisTests/utils/test_streamio.py::TestStreamIO::test_PDBReader PASSED [ 99%] 750s testsuite/MDAnalysisTests/utils/test_streamio.py::TestStreamIO::test_CRDReader PASSED [ 99%] 750s testsuite/MDAnalysisTests/utils/test_streamio.py::TestStreamIO::test_PSFParser PASSED [ 99%] 750s testsuite/MDAnalysisTests/utils/test_streamio.py::TestStreamIO::test_PSF_CRD PASSED [ 99%] 750s testsuite/MDAnalysisTests/utils/test_streamio.py::TestStreamIO::test_PQRReader PASSED [ 99%] 750s testsuite/MDAnalysisTests/utils/test_streamio.py::TestStreamIO::test_PDBQTReader PASSED [ 99%] 750s testsuite/MDAnalysisTests/utils/test_streamio.py::TestStreamIO::test_GROReader PASSED [ 99%] 750s testsuite/MDAnalysisTests/utils/test_streamio.py::TestStreamIO::test_MOL2Reader PASSED [ 99%] 750s testsuite/MDAnalysisTests/utils/test_streamio.py::TestStreamIO::test_XYZReader PASSED [ 99%] 750s testsuite/MDAnalysisTests/utils/test_transformations.py::test_identity_matrix[identity_matrix0] PASSED [ 99%] 750s testsuite/MDAnalysisTests/utils/test_transformations.py::test_identity_matrix[identity_matrix1] PASSED [ 99%] 750s testsuite/MDAnalysisTests/utils/test_transformations.py::test_translation_matrix[translation_matrix0] PASSED [ 99%] 750s testsuite/MDAnalysisTests/utils/test_transformations.py::test_translation_matrix[translation_matrix1] PASSED [ 99%] 750s testsuite/MDAnalysisTests/utils/test_transformations.py::test_translation_from_matrix PASSED [ 99%] 750s testsuite/MDAnalysisTests/utils/test_transformations.py::test_reflection_matrix[reflection_matrix0] PASSED [ 99%] 750s testsuite/MDAnalysisTests/utils/test_transformations.py::test_reflection_matrix[reflection_matrix1] PASSED [ 99%] 750s testsuite/MDAnalysisTests/utils/test_transformations.py::test_reflection_from_matrix PASSED [ 99%] 750s testsuite/MDAnalysisTests/utils/test_transformations.py::test_rotation_matrix[rotation_matrix0] PASSED [ 99%] 750s testsuite/MDAnalysisTests/utils/test_transformations.py::test_rotation_matrix[rotation_matrix1] PASSED [ 99%] 750s testsuite/MDAnalysisTests/utils/test_transformations.py::test_rotation_from_matrix PASSED [ 99%] 750s testsuite/MDAnalysisTests/utils/test_transformations.py::test_scale_matrix[scale_matrix0] PASSED [ 99%] 750s testsuite/MDAnalysisTests/utils/test_transformations.py::test_scale_matrix[scale_matrix1] PASSED [ 99%] 750s testsuite/MDAnalysisTests/utils/test_transformations.py::test_scale_from_matrix PASSED [ 99%] 750s testsuite/MDAnalysisTests/utils/test_transformations.py::TestProjectionMatrix::test_projection_matrix_1[projection_matrix0] PASSED [ 99%] 750s testsuite/MDAnalysisTests/utils/test_transformations.py::TestProjectionMatrix::test_projection_matrix_1[projection_matrix1] PASSED [ 99%] 750s testsuite/MDAnalysisTests/utils/test_transformations.py::TestProjectionMatrix::test_projection_matrix_2[projection_matrix0] PASSED [ 99%] 750s testsuite/MDAnalysisTests/utils/test_transformations.py::TestProjectionMatrix::test_projection_matrix_2[projection_matrix1] PASSED [ 99%] 750s testsuite/MDAnalysisTests/utils/test_transformations.py::TestProjectionMatrix::test_projection_matrix_3[projection_matrix0] PASSED [ 99%] 750s testsuite/MDAnalysisTests/utils/test_transformations.py::TestProjectionMatrix::test_projection_matrix_3[projection_matrix1] PASSED [ 99%] 750s testsuite/MDAnalysisTests/utils/test_transformations.py::TestProjectionFromMatrix::test_projection_from_matrix_1 PASSED [ 99%] 750s testsuite/MDAnalysisTests/utils/test_transformations.py::TestProjectionFromMatrix::test_projection_from_matrix_2 PASSED [ 99%] 750s testsuite/MDAnalysisTests/utils/test_transformations.py::TestProjectionFromMatrix::test_projection_from_matrix_3 PASSED [ 99%] 750s testsuite/MDAnalysisTests/utils/test_transformations.py::TestProjectionFromMatrix::test_projection_from_matrix_4 PASSED [ 99%] 750s testsuite/MDAnalysisTests/utils/test_transformations.py::TestClipMatrix::test_clip_matrix_1[clip_matrix0] PASSED [ 99%] 750s testsuite/MDAnalysisTests/utils/test_transformations.py::TestClipMatrix::test_clip_matrix_1[clip_matrix1] PASSED [ 99%] 750s testsuite/MDAnalysisTests/utils/test_transformations.py::TestClipMatrix::test_clip_matrix_2[clip_matrix0] PASSED [ 99%] 750s testsuite/MDAnalysisTests/utils/test_transformations.py::TestClipMatrix::test_clip_matrix_2[clip_matrix1] PASSED [ 99%] 750s testsuite/MDAnalysisTests/utils/test_transformations.py::TestClipMatrix::test_clip_matrix_frustrum_left_right_bounds[clip_matrix0] PASSED [ 99%] 750s testsuite/MDAnalysisTests/utils/test_transformations.py::TestClipMatrix::test_clip_matrix_frustrum_left_right_bounds[clip_matrix1] PASSED [ 99%] 750s testsuite/MDAnalysisTests/utils/test_transformations.py::TestClipMatrix::test_clip_matrix_frustrum_bottom_top_bounds[clip_matrix0] PASSED [ 99%] 750s testsuite/MDAnalysisTests/utils/test_transformations.py::TestClipMatrix::test_clip_matrix_frustrum_bottom_top_bounds[clip_matrix1] PASSED [ 99%] 750s testsuite/MDAnalysisTests/utils/test_transformations.py::TestClipMatrix::test_clip_matrix_frustrum_near_far_bounds[clip_matrix0] PASSED [ 99%] 750s testsuite/MDAnalysisTests/utils/test_transformations.py::TestClipMatrix::test_clip_matrix_frustrum_near_far_bounds[clip_matrix1] PASSED [ 99%] 750s testsuite/MDAnalysisTests/utils/test_transformations.py::test_shear_matrix[shear_matrix0] PASSED [ 99%] 750s testsuite/MDAnalysisTests/utils/test_transformations.py::test_shear_matrix[shear_matrix1] PASSED [ 99%] 750s testsuite/MDAnalysisTests/utils/test_transformations.py::test_shear_from_matrix PASSED [ 99%] 750s testsuite/MDAnalysisTests/utils/test_transformations.py::TestDecomposeMatrix::test_decompose_matrix_1 PASSED [ 99%] 750s testsuite/MDAnalysisTests/utils/test_transformations.py::TestDecomposeMatrix::test_decompose_matrix_2 PASSED [ 99%] 750s testsuite/MDAnalysisTests/utils/test_transformations.py::TestDecomposeMatrix::test_decompose_matrix_3 PASSED [ 99%] 750s testsuite/MDAnalysisTests/utils/test_transformations.py::test_compose_matrix PASSED [ 99%] 750s testsuite/MDAnalysisTests/utils/test_transformations.py::TestOrthogonalizationMatrix::test_orthogonalization_matrix_1[orthogonalization_matrix0] PASSED [ 99%] 750s testsuite/MDAnalysisTests/utils/test_transformations.py::TestOrthogonalizationMatrix::test_orthogonalization_matrix_1[orthogonalization_matrix1] PASSED [ 99%] 750s testsuite/MDAnalysisTests/utils/test_transformations.py::TestOrthogonalizationMatrix::test_orthogonalization_matrix_2[orthogonalization_matrix0] PASSED [ 99%] 750s testsuite/MDAnalysisTests/utils/test_transformations.py::TestOrthogonalizationMatrix::test_orthogonalization_matrix_2[orthogonalization_matrix1] PASSED [ 99%] 750s testsuite/MDAnalysisTests/utils/test_transformations.py::test_superimposition_matrix[superimposition_matrix0] PASSED [ 99%] 750s testsuite/MDAnalysisTests/utils/test_transformations.py::test_superimposition_matrix[superimposition_matrix1] PASSED [ 99%] 750s testsuite/MDAnalysisTests/utils/test_transformations.py::TestEulerMatrix::test_euler_matrix_1[euler_matrix0] PASSED [ 99%] 750s testsuite/MDAnalysisTests/utils/test_transformations.py::TestEulerMatrix::test_euler_matrix_1[euler_matrix1] PASSED [ 99%] 750s testsuite/MDAnalysisTests/utils/test_transformations.py::TestEulerMatrix::test_euler_matrix_2[euler_matrix0] PASSED [ 99%] 750s testsuite/MDAnalysisTests/utils/test_transformations.py::TestEulerMatrix::test_euler_matrix_2[euler_matrix1] PASSED [ 99%] 750s testsuite/MDAnalysisTests/utils/test_transformations.py::TestEulerFromMatrix::test_euler_from_matrix_1[euler_from_matrix0] PASSED [ 99%] 750s testsuite/MDAnalysisTests/utils/test_transformations.py::TestEulerFromMatrix::test_euler_from_matrix_1[euler_from_matrix1] PASSED [ 99%] 750s testsuite/MDAnalysisTests/utils/test_transformations.py::TestEulerFromMatrix::test_euler_from_matrix_2[euler_from_matrix0] PASSED [ 99%] 750s testsuite/MDAnalysisTests/utils/test_transformations.py::TestEulerFromMatrix::test_euler_from_matrix_2[euler_from_matrix1] PASSED [ 99%] 750s testsuite/MDAnalysisTests/utils/test_transformations.py::test_euler_from_quaternion PASSED [ 99%] 750s testsuite/MDAnalysisTests/utils/test_transformations.py::test_quaternion_from_euler[quaternion_from_euler0] PASSED [ 99%] 750s testsuite/MDAnalysisTests/utils/test_transformations.py::test_quaternion_from_euler[quaternion_from_euler1] PASSED [ 99%] 750s testsuite/MDAnalysisTests/utils/test_transformations.py::test_quaternion_about_axis[quaternion_about_axis0] PASSED [ 99%] 750s testsuite/MDAnalysisTests/utils/test_transformations.py::test_quaternion_about_axis[quaternion_about_axis1] PASSED [ 99%] 750s testsuite/MDAnalysisTests/utils/test_transformations.py::TestQuaternionMatrix::test_quaternion_matrix_1[quaternion_matrix0] PASSED [ 99%] 750s testsuite/MDAnalysisTests/utils/test_transformations.py::TestQuaternionMatrix::test_quaternion_matrix_1[quaternion_matrix1] PASSED [ 99%] 750s testsuite/MDAnalysisTests/utils/test_transformations.py::TestQuaternionMatrix::test_quaternion_matrix_2[quaternion_matrix0] PASSED [ 99%] 750s testsuite/MDAnalysisTests/utils/test_transformations.py::TestQuaternionMatrix::test_quaternion_matrix_2[quaternion_matrix1] PASSED [ 99%] 750s testsuite/MDAnalysisTests/utils/test_transformations.py::TestQuaternionMatrix::test_quaternion_matrix_3[quaternion_matrix0] PASSED [ 99%] 750s testsuite/MDAnalysisTests/utils/test_transformations.py::TestQuaternionMatrix::test_quaternion_matrix_3[quaternion_matrix1] PASSED [ 99%] 750s testsuite/MDAnalysisTests/utils/test_transformations.py::TestQuaternionFromMatrix::test_quaternion_from_matrix_1[quaternion_from_matrix0] PASSED [ 99%] 750s testsuite/MDAnalysisTests/utils/test_transformations.py::TestQuaternionFromMatrix::test_quaternion_from_matrix_1[quaternion_from_matrix1] PASSED [ 99%] 750s testsuite/MDAnalysisTests/utils/test_transformations.py::TestQuaternionFromMatrix::test_quaternion_from_matrix_2[quaternion_from_matrix0] PASSED [ 99%] 750s testsuite/MDAnalysisTests/utils/test_transformations.py::TestQuaternionFromMatrix::test_quaternion_from_matrix_2[quaternion_from_matrix1] PASSED [ 99%] 750s testsuite/MDAnalysisTests/utils/test_transformations.py::TestQuaternionFromMatrix::test_quaternion_from_matrix_3[quaternion_from_matrix0] PASSED [ 99%] 750s testsuite/MDAnalysisTests/utils/test_transformations.py::TestQuaternionFromMatrix::test_quaternion_from_matrix_3[quaternion_from_matrix1] PASSED [ 99%] 750s testsuite/MDAnalysisTests/utils/test_transformations.py::TestQuaternionFromMatrix::test_quaternion_from_matrix_4[quaternion_from_matrix0] PASSED [ 99%] 750s testsuite/MDAnalysisTests/utils/test_transformations.py::TestQuaternionFromMatrix::test_quaternion_from_matrix_4[quaternion_from_matrix1] PASSED [ 99%] 750s testsuite/MDAnalysisTests/utils/test_transformations.py::TestQuaternionFromMatrix::test_quaternion_from_matrix_5[quaternion_from_matrix0] PASSED [ 99%] 750s testsuite/MDAnalysisTests/utils/test_transformations.py::TestQuaternionFromMatrix::test_quaternion_from_matrix_5[quaternion_from_matrix1] PASSED [ 99%] 750s testsuite/MDAnalysisTests/utils/test_transformations.py::TestQuaternionFromMatrix::test_quaternion_from_matrix_6[quaternion_from_matrix0] PASSED [ 99%] 750s testsuite/MDAnalysisTests/utils/test_transformations.py::TestQuaternionFromMatrix::test_quaternion_from_matrix_6[quaternion_from_matrix1] PASSED [ 99%] 750s testsuite/MDAnalysisTests/utils/test_transformations.py::test_quaternion_multiply[quaternion_multiply0] PASSED [ 99%] 750s testsuite/MDAnalysisTests/utils/test_transformations.py::test_quaternion_multiply[quaternion_multiply1] PASSED [ 99%] 751s testsuite/MDAnalysisTests/utils/test_transformations.py::test_quaternion_conjugate[quaternion_conjugate0] PASSED [ 99%] 751s testsuite/MDAnalysisTests/utils/test_transformations.py::test_quaternion_conjugate[quaternion_conjugate1] PASSED [ 99%] 751s testsuite/MDAnalysisTests/utils/test_transformations.py::test_quaternion_inverse[quaternion_inverse0] PASSED [ 99%] 751s testsuite/MDAnalysisTests/utils/test_transformations.py::test_quaternion_inverse[quaternion_inverse1] PASSED [ 99%] 751s testsuite/MDAnalysisTests/utils/test_transformations.py::test_quaternion_real PASSED [ 99%] 751s testsuite/MDAnalysisTests/utils/test_transformations.py::test_quaternion_imag PASSED [ 99%] 751s testsuite/MDAnalysisTests/utils/test_transformations.py::test_quaternion_slerp[quaternion_slerp0] PASSED [ 99%] 751s testsuite/MDAnalysisTests/utils/test_transformations.py::test_quaternion_slerp[quaternion_slerp1] PASSED [ 99%] 751s testsuite/MDAnalysisTests/utils/test_transformations.py::TestRandomQuaternion::test_random_quaternion_1[random_quaternion0] PASSED [ 99%] 751s testsuite/MDAnalysisTests/utils/test_transformations.py::TestRandomQuaternion::test_random_quaternion_1[random_quaternion1] PASSED [ 99%] 751s testsuite/MDAnalysisTests/utils/test_transformations.py::TestRandomQuaternion::test_random_quaternion_2[random_quaternion0] PASSED [ 99%] 751s testsuite/MDAnalysisTests/utils/test_transformations.py::TestRandomQuaternion::test_random_quaternion_2[random_quaternion1] PASSED [ 99%] 751s testsuite/MDAnalysisTests/utils/test_transformations.py::test_random_rotation_matrix[random_rotation_matrix0] PASSED [ 99%] 751s testsuite/MDAnalysisTests/utils/test_transformations.py::test_random_rotation_matrix[random_rotation_matrix1] PASSED [ 99%] 751s testsuite/MDAnalysisTests/utils/test_transformations.py::TestInverseMatrix::test_inverse[1-inverse_matrix0] PASSED [ 99%] 751s testsuite/MDAnalysisTests/utils/test_transformations.py::TestInverseMatrix::test_inverse[1-inverse_matrix1] PASSED [ 99%] 751s testsuite/MDAnalysisTests/utils/test_transformations.py::TestInverseMatrix::test_inverse[2-inverse_matrix0] PASSED [ 99%] 751s testsuite/MDAnalysisTests/utils/test_transformations.py::TestInverseMatrix::test_inverse[2-inverse_matrix1] PASSED [ 99%] 751s testsuite/MDAnalysisTests/utils/test_transformations.py::TestInverseMatrix::test_inverse[3-inverse_matrix0] PASSED [ 99%] 751s testsuite/MDAnalysisTests/utils/test_transformations.py::TestInverseMatrix::test_inverse[3-inverse_matrix1] PASSED [ 99%] 751s testsuite/MDAnalysisTests/utils/test_transformations.py::TestInverseMatrix::test_inverse[4-inverse_matrix0] PASSED [ 99%] 751s testsuite/MDAnalysisTests/utils/test_transformations.py::TestInverseMatrix::test_inverse[4-inverse_matrix1] PASSED [ 99%] 751s testsuite/MDAnalysisTests/utils/test_transformations.py::TestInverseMatrix::test_inverse[5-inverse_matrix0] PASSED [ 99%] 751s testsuite/MDAnalysisTests/utils/test_transformations.py::TestInverseMatrix::test_inverse[5-inverse_matrix1] PASSED [ 99%] 751s testsuite/MDAnalysisTests/utils/test_transformations.py::TestInverseMatrix::test_inverse[6-inverse_matrix0] PASSED [ 99%] 751s testsuite/MDAnalysisTests/utils/test_transformations.py::TestInverseMatrix::test_inverse[6-inverse_matrix1] PASSED [ 99%] 751s testsuite/MDAnalysisTests/utils/test_transformations.py::TestInverseMatrix::test_inverse_matrix[inverse_matrix0] PASSED [ 99%] 751s testsuite/MDAnalysisTests/utils/test_transformations.py::TestInverseMatrix::test_inverse_matrix[inverse_matrix1] PASSED [ 99%] 751s testsuite/MDAnalysisTests/utils/test_transformations.py::TestIsSameTransform::test_is_same_transform_1[is_same_transform0] PASSED [ 99%] 751s testsuite/MDAnalysisTests/utils/test_transformations.py::TestIsSameTransform::test_is_same_transform_1[is_same_transform1] PASSED [ 99%] 751s testsuite/MDAnalysisTests/utils/test_transformations.py::TestIsSameTransform::test_is_same_transform_2[is_same_transform0] PASSED [ 99%] 751s testsuite/MDAnalysisTests/utils/test_transformations.py::TestIsSameTransform::test_is_same_transform_2[is_same_transform1] PASSED [ 99%] 751s testsuite/MDAnalysisTests/utils/test_transformations.py::TestRandomVector::test_random_vector_1[random_vector0] PASSED [ 99%] 751s testsuite/MDAnalysisTests/utils/test_transformations.py::TestRandomVector::test_random_vector_1[random_vector1] PASSED [ 99%] 751s testsuite/MDAnalysisTests/utils/test_transformations.py::TestRandomVector::test_random_vector_2[random_vector0] PASSED [ 99%] 751s testsuite/MDAnalysisTests/utils/test_transformations.py::TestRandomVector::test_random_vector_2[random_vector1] PASSED [ 99%] 751s testsuite/MDAnalysisTests/utils/test_transformations.py::TestUnitVector::test_unit_vector_1[unit_vector0] PASSED [ 99%] 751s testsuite/MDAnalysisTests/utils/test_transformations.py::TestUnitVector::test_unit_vector_1[unit_vector1] PASSED [ 99%] 751s testsuite/MDAnalysisTests/utils/test_transformations.py::TestUnitVector::test_unit_vector_2[unit_vector0] PASSED [ 99%] 751s testsuite/MDAnalysisTests/utils/test_transformations.py::TestUnitVector::test_unit_vector_2[unit_vector1] PASSED [ 99%] 751s testsuite/MDAnalysisTests/utils/test_transformations.py::TestUnitVector::test_unit_vector_3[unit_vector0] PASSED [ 99%] 751s testsuite/MDAnalysisTests/utils/test_transformations.py::TestUnitVector::test_unit_vector_3[unit_vector1] PASSED [ 99%] 751s testsuite/MDAnalysisTests/utils/test_transformations.py::TestUnitVector::test_unit_vector_4[unit_vector0] PASSED [ 99%] 751s testsuite/MDAnalysisTests/utils/test_transformations.py::TestUnitVector::test_unit_vector_4[unit_vector1] PASSED [ 99%] 751s testsuite/MDAnalysisTests/utils/test_transformations.py::TestUnitVector::test_unit_vector_5[unit_vector0] PASSED [ 99%] 751s testsuite/MDAnalysisTests/utils/test_transformations.py::TestUnitVector::test_unit_vector_5[unit_vector1] PASSED [ 99%] 751s testsuite/MDAnalysisTests/utils/test_transformations.py::TestUnitVector::test_unit_vector_6[unit_vector0] PASSED [ 99%] 751s testsuite/MDAnalysisTests/utils/test_transformations.py::TestUnitVector::test_unit_vector_6[unit_vector1] PASSED [ 99%] 751s testsuite/MDAnalysisTests/utils/test_transformations.py::TestVectorNorm::test_vector_norm_1[vector_norm0] PASSED [ 99%] 751s testsuite/MDAnalysisTests/utils/test_transformations.py::TestVectorNorm::test_vector_norm_1[vector_norm1] PASSED [ 99%] 751s testsuite/MDAnalysisTests/utils/test_transformations.py::TestVectorNorm::test_vector_norm_2[vector_norm0] PASSED [ 99%] 751s testsuite/MDAnalysisTests/utils/test_transformations.py::TestVectorNorm::test_vector_norm_2[vector_norm1] PASSED [ 99%] 751s testsuite/MDAnalysisTests/utils/test_transformations.py::TestVectorNorm::test_vector_norm_3[vector_norm0] PASSED [ 99%] 751s testsuite/MDAnalysisTests/utils/test_transformations.py::TestVectorNorm::test_vector_norm_3[vector_norm1] PASSED [ 99%] 751s testsuite/MDAnalysisTests/utils/test_transformations.py::TestVectorNorm::test_vector_norm_4[vector_norm0] PASSED [ 99%] 751s testsuite/MDAnalysisTests/utils/test_transformations.py::TestVectorNorm::test_vector_norm_4[vector_norm1] PASSED [ 99%] 751s testsuite/MDAnalysisTests/utils/test_transformations.py::TestVectorNorm::test_vector_norm_5[vector_norm0] PASSED [ 99%] 751s testsuite/MDAnalysisTests/utils/test_transformations.py::TestVectorNorm::test_vector_norm_5[vector_norm1] PASSED [ 99%] 751s testsuite/MDAnalysisTests/utils/test_transformations.py::TestVectorNorm::test_vector_norm_6[vector_norm0] PASSED [ 99%] 751s testsuite/MDAnalysisTests/utils/test_transformations.py::TestVectorNorm::test_vector_norm_6[vector_norm1] PASSED [ 99%] 751s testsuite/MDAnalysisTests/utils/test_transformations.py::TestArcBall::test_arcball_1 PASSED [ 99%] 751s testsuite/MDAnalysisTests/utils/test_transformations.py::TestArcBall::test_arcball_2 PASSED [ 99%] 751s testsuite/MDAnalysisTests/utils/test_transformations.py::test_rotaxis_equal_vectors PASSED [ 99%] 751s testsuite/MDAnalysisTests/utils/test_transformations.py::test_rotaxis_different_vectors PASSED [ 99%] 751s testsuite/MDAnalysisTests/utils/test_units.py::TestUnitEncoding::test_unicode PASSED [ 99%] 751s testsuite/MDAnalysisTests/utils/test_units.py::TestUnitEncoding::test_unicode_encoding_with_symbol PASSED [ 99%] 751s testsuite/MDAnalysisTests/utils/test_units.py::TestConstants::test_constant[N_Avogadro-6.02214129e+23] PASSED [ 99%] 751s testsuite/MDAnalysisTests/utils/test_units.py::TestConstants::test_constant[elementary_charge-1.602176565e-19] PASSED [ 99%] 751s testsuite/MDAnalysisTests/utils/test_units.py::TestConstants::test_constant[calorie-4.184] PASSED [ 99%] 751s testsuite/MDAnalysisTests/utils/test_units.py::TestConstants::test_constant[Boltzmann_constant-0.008314462159] PASSED [ 99%] 751s testsuite/MDAnalysisTests/utils/test_units.py::TestConstants::test_constant[Boltzman_constant-0.008314462159] PASSED [ 99%] 751s testsuite/MDAnalysisTests/utils/test_units.py::TestConstants::test_constant[electric_constant-0.00552635] PASSED [ 99%] 751s testsuite/MDAnalysisTests/utils/test_units.py::TestConstants::test_boltzmann_typo_deprecation PASSED [ 99%] 751s testsuite/MDAnalysisTests/utils/test_units.py::TestConversion::test_length[12.34567-nm-A-123.4567] PASSED [ 99%] 751s testsuite/MDAnalysisTests/utils/test_units.py::TestConversion::test_length[123.4567-Angstrom-nm-12.34567] PASSED [ 99%] 751s testsuite/MDAnalysisTests/utils/test_units.py::TestConversion::test_energy[1-kcal/mol-kJ/mol-4.184] PASSED [ 99%] 751s testsuite/MDAnalysisTests/utils/test_units.py::TestConversion::test_energy[1-kcal/mol-eV-0.0433641] PASSED [ 99%] 751s testsuite/MDAnalysisTests/utils/test_units.py::TestConversion::test_force[1-kJ/(mol*A)-J/m-1.66053892103219e-11] PASSED [ 99%] 751s testsuite/MDAnalysisTests/utils/test_units.py::TestConversion::test_force[2.5-kJ/(mol*nm)-kJ/(mol*A)-0.25] PASSED [ 99%] 751s testsuite/MDAnalysisTests/utils/test_units.py::TestConversion::test_force[1-kcal/(mol*Angstrom)-kJ/(mol*Angstrom)-4.184] PASSED [ 99%] 751s testsuite/MDAnalysisTests/utils/test_units.py::TestConversion::test_speed[1-A/ps-m/s-100.0] PASSED [ 99%] 751s testsuite/MDAnalysisTests/utils/test_units.py::TestConversion::test_speed[1-A/ps-nm/ps-0.1] PASSED [ 99%] 751s testsuite/MDAnalysisTests/utils/test_units.py::TestConversion::test_speed[1-A/ps-pm/ps-100.0] PASSED [ 99%] 751s testsuite/MDAnalysisTests/utils/test_units.py::TestConversion::test_speed[1-A/ms-A/ps-1000000000.0] PASSED [ 99%] 751s testsuite/MDAnalysisTests/utils/test_units.py::TestConversion::test_speed[1-A/us-A/ps-1000000.0] PASSED [ 99%] 751s testsuite/MDAnalysisTests/utils/test_units.py::TestConversion::test_speed[1-A/fs-A/ps-0.001] PASSED [ 99%] 751s testsuite/MDAnalysisTests/utils/test_units.py::TestConversion::test_speed[1-A/AKMA-A/ps-20.45482949774598] PASSED [ 99%] 751s testsuite/MDAnalysisTests/utils/test_units.py::TestConversion::test_unit_unknown[12.34567-Stone-nm] PASSED [ 99%] 751s testsuite/MDAnalysisTests/utils/test_units.py::TestConversion::test_unit_unknown[12.34567-nm-Stone] PASSED [ 99%] 751s testsuite/MDAnalysisTests/utils/test_units.py::TestConversion::test_unit_unconvertable PASSED [ 99%] 751s testsuite/MDAnalysisTests/utils/test_units.py::TestBaseUnits::test_MDANALYSIS_BASE_UNITS_correct PASSED [ 99%] 751s testsuite/MDAnalysisTests/visualization/test_streamlines.py::test_streamplot_2D PASSED [ 99%] 751s testsuite/MDAnalysisTests/visualization/test_streamlines.py::test_streamplot_2D_zero_return PASSED [ 99%] 751s testsuite/MDAnalysisTests/visualization/test_streamlines.py::test_streamplot_3D PASSED [100%] 751s 751s =============================== warnings summary =============================== 751s ../../../../usr/lib/python3/dist-packages/Bio/Application/__init__.py:39 751s /usr/lib/python3/dist-packages/Bio/Application/__init__.py:39: BiopythonDeprecationWarning: The Bio.Application modules and modules relying on it have been deprecated. 751s 751s Due to the on going maintenance burden of keeping command line application 751s wrappers up to date, we have decided to deprecate and eventually remove these 751s modules. 751s 751s We instead now recommend building your command line and invoking it directly 751s with the subprocess module. 751s warnings.warn( 751s 751s ../../../../usr/lib/python3/dist-packages/MDAnalysis/coordinates/DCD.py:165: 2 warnings 751s testsuite/MDAnalysisTests/analysis/test_align.py: 71 warnings 751s testsuite/MDAnalysisTests/analysis/test_base.py: 3 warnings 751s testsuite/MDAnalysisTests/analysis/test_bat.py: 2 warnings 751s testsuite/MDAnalysisTests/analysis/test_contacts.py: 21 warnings 751s testsuite/MDAnalysisTests/analysis/test_dielectric.py: 6 warnings 751s testsuite/MDAnalysisTests/analysis/test_encore.py: 10 warnings 751s testsuite/MDAnalysisTests/analysis/test_helix_analysis.py: 7 warnings 751s testsuite/MDAnalysisTests/analysis/test_hydrogenbondautocorrel.py: 1 warning 751s testsuite/MDAnalysisTests/analysis/test_hydrogenbondautocorrel_deprecated.py: 1 warning 751s testsuite/MDAnalysisTests/analysis/test_hydrogenbonds_analysis.py: 6 warnings 751s testsuite/MDAnalysisTests/analysis/test_lineardensity.py: 6 warnings 751s testsuite/MDAnalysisTests/analysis/test_msd.py: 2 warnings 751s testsuite/MDAnalysisTests/analysis/test_pca.py: 12 warnings 751s testsuite/MDAnalysisTests/analysis/test_psa.py: 124 warnings 751s testsuite/MDAnalysisTests/analysis/test_rms.py: 19 warnings 751s testsuite/MDAnalysisTests/analysis/test_waterdynamics.py: 1 warning 751s testsuite/MDAnalysisTests/coordinates/test_chainreader.py: 63 warnings 751s testsuite/MDAnalysisTests/coordinates/test_copying.py: 16 warnings 751s testsuite/MDAnalysisTests/coordinates/test_dcd.py: 59 warnings 751s testsuite/MDAnalysisTests/coordinates/test_lammps.py: 5 warnings 751s testsuite/MDAnalysisTests/coordinates/test_memory.py: 41 warnings 751s testsuite/MDAnalysisTests/coordinates/test_pdb.py: 7 warnings 751s testsuite/MDAnalysisTests/core/test_accumulate.py: 48 warnings 751s testsuite/MDAnalysisTests/core/test_atom.py: 15 warnings 751s testsuite/MDAnalysisTests/core/test_atomgroup.py: 170 warnings 751s testsuite/MDAnalysisTests/core/test_atomselections.py: 4 warnings 751s testsuite/MDAnalysisTests/core/test_copying.py: 6 warnings 751s testsuite/MDAnalysisTests/core/test_groups.py: 11 warnings 751s testsuite/MDAnalysisTests/core/test_residue.py: 4 warnings 751s testsuite/MDAnalysisTests/core/test_residuegroup.py: 23 warnings 751s testsuite/MDAnalysisTests/core/test_segmentgroup.py: 9 warnings 751s testsuite/MDAnalysisTests/core/test_topologyattrs.py: 8 warnings 751s testsuite/MDAnalysisTests/core/test_topologyobjects.py: 4 warnings 751s testsuite/MDAnalysisTests/core/test_universe.py: 31 warnings 751s testsuite/MDAnalysisTests/lib/test_distances.py: 46 warnings 751s testsuite/MDAnalysisTests/lib/test_neighborsearch.py: 2 warnings 751s testsuite/MDAnalysisTests/lib/test_qcprot.py: 2 warnings 751s testsuite/MDAnalysisTests/lib/test_util.py: 67 warnings 751s testsuite/MDAnalysisTests/parallelism/test_multiprocessing.py: 3 warnings 751s testsuite/MDAnalysisTests/parallelism/test_pickle_transformation.py: 8 warnings 751s testsuite/MDAnalysisTests/topology/test_guessers.py: 1 warning 751s testsuite/MDAnalysisTests/topology/test_minimal.py: 2 warnings 751s testsuite/MDAnalysisTests/transformations/test_base.py: 1 warning 751s testsuite/MDAnalysisTests/transformations/test_nojump.py: 3 warnings 751s testsuite/MDAnalysisTests/utils/test_modelling.py: 3 warnings 751s testsuite/MDAnalysisTests/utils/test_selections.py: 20 warnings 751s /usr/lib/python3/dist-packages/MDAnalysis/coordinates/DCD.py:165: DeprecationWarning: DCDReader currently makes independent timesteps by copying self.ts while other readers update self.ts inplace. This behavior will be changed in 3.0 to be the same as other readers. Read more at https://github.com/MDAnalysis/mdanalysis/issues/3889 to learn if this change in behavior might affect you. 751s warnings.warn("DCDReader currently makes independent timesteps" 751s 751s ../../../../usr/lib/python3/dist-packages/MDAnalysis/analysis/hbonds/hbond_autocorrel.py:52 751s /usr/lib/python3/dist-packages/MDAnalysis/analysis/hbonds/hbond_autocorrel.py:52: DeprecationWarning: This module was moved to MDAnalysis.analysis.hydrogenbonds.hbond_autocorrel; hbonds.hbond_autocorrel will be removed in 3.0.0. 751s warnings.warn(wmsg, category=DeprecationWarning) 751s 751s ../../../../usr/lib/python3/dist-packages/MDAnalysis/coordinates/chemfiles.py:122 751s testsuite/MDAnalysisTests/coordinates/test_writer_api.py::test_ts_error[ChemfilesWriter] 751s testsuite/MDAnalysisTests/coordinates/test_writer_api.py::test_write_with_atomgroup[ChemfilesWriter] 751s testsuite/MDAnalysisTests/coordinates/test_writer_api.py::test_write_with_universe[ChemfilesWriter] 751s /usr/lib/python3/dist-packages/MDAnalysis/coordinates/chemfiles.py:122: UserWarning: chemfiles package not found, try installing it with 'pip install chemfiles' 751s warnings.warn( 751s 751s testsuite/MDAnalysisTests/analysis/test_align.py: 8 warnings 751s testsuite/MDAnalysisTests/analysis/test_psa.py: 20 warnings 751s testsuite/MDAnalysisTests/coordinates/test_chainreader.py: 1 warning 751s testsuite/MDAnalysisTests/coordinates/test_dcd.py: 3 warnings 751s testsuite/MDAnalysisTests/coordinates/test_writer_api.py: 4 warnings 751s testsuite/MDAnalysisTests/core/test_atomgroup.py: 13 warnings 751s /usr/lib/python3/dist-packages/MDAnalysis/coordinates/DCD.py:463: UserWarning: No dimensions set for current frame, zeroed unitcell will be written 751s warnings.warn(wmsg) 751s 751s testsuite/MDAnalysisTests/analysis/test_align.py: 5 warnings 751s testsuite/MDAnalysisTests/analysis/test_encore.py: 191 warnings 751s testsuite/MDAnalysisTests/core/test_universe.py: 17 warnings 751s /usr/lib/python3/dist-packages/MDAnalysis/coordinates/memory.py:535: DeprecationWarning: asel argument to timeseries will be renamed to'atomgroup' in 3.0, see #3911 751s warnings.warn( 751s 751s testsuite/MDAnalysisTests/analysis/test_align.py: 2 warnings 751s testsuite/MDAnalysisTests/core/test_topologyobjects.py: 1 warning 751s testsuite/MDAnalysisTests/core/test_universe.py: 46 warnings 751s testsuite/MDAnalysisTests/core/test_updating_atomgroup.py: 1 warning 751s testsuite/MDAnalysisTests/topology/test_psf.py: 4 warnings 751s testsuite/MDAnalysisTests/topology/test_topology_str_types.py: 5 warnings 751s testsuite/MDAnalysisTests/utils/test_modelling.py: 1 warning 751s testsuite/MDAnalysisTests/utils/test_streamio.py: 1 warning 751s /usr/lib/python3/dist-packages/MDAnalysis/core/universe.py:147: UserWarning: No coordinate reader found for /tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/adk.psf. Skipping this file. 751s warnings.warn('No coordinate reader found for {}. Skipping ' 751s 751s testsuite/MDAnalysisTests/analysis/test_bat.py: 9 warnings 751s testsuite/MDAnalysisTests/coordinates/test_mol2.py: 2 warnings 751s /usr/lib/python3/dist-packages/MDAnalysis/topology/MOL2Parser.py:234: UserWarning: Unknown elements found for some atoms: {'ho', 'c3', 'hc', 'h1', 'oh'}. These have been given an empty element record. 751s warnings.warn("Unknown elements found for some " 751s 751s testsuite/MDAnalysisTests/analysis/test_bat.py: 9 warnings 751s testsuite/MDAnalysisTests/coordinates/test_mol2.py: 2 warnings 751s testsuite/MDAnalysisTests/coordinates/test_pdb.py: 1 warning 751s testsuite/MDAnalysisTests/topology/test_mol2.py: 3 warnings 751s testsuite/MDAnalysisTests/topology/test_pdb.py: 1 warning 751s /usr/lib/python3/dist-packages/MDAnalysis/topology/guessers.py:146: UserWarning: Failed to guess the mass for the following atom types: 751s warnings.warn("Failed to guess the mass for the following atom types: {}".format(atom_type)) 751s 751s testsuite/MDAnalysisTests/analysis/test_bat.py: 7 warnings 751s testsuite/MDAnalysisTests/analysis/test_contacts.py: 2 warnings 751s testsuite/MDAnalysisTests/analysis/test_helix_analysis.py: 1 warning 751s testsuite/MDAnalysisTests/analysis/test_nucleicacids.py: 3 warnings 751s testsuite/MDAnalysisTests/analysis/test_persistencelength.py: 9 warnings 751s testsuite/MDAnalysisTests/analysis/test_wbridge.py: 32 warnings 751s /usr/lib/python3/dist-packages/MDAnalysis/analysis/base.py:447: UserWarning: Reader has no dt information, set to 1.0 ps 751s self.times[i] = ts.time 751s 751s testsuite/MDAnalysisTests/analysis/test_bat.py: 1 warning 751s testsuite/MDAnalysisTests/analysis/test_hydrogenbondautocorrel.py: 1 warning 751s testsuite/MDAnalysisTests/analysis/test_hydrogenbondautocorrel_deprecated.py: 1 warning 751s testsuite/MDAnalysisTests/coordinates/test_amber_inpcrd.py: 2 warnings 751s testsuite/MDAnalysisTests/coordinates/test_copying.py: 1 warning 751s testsuite/MDAnalysisTests/coordinates/test_crd.py: 3 warnings 751s testsuite/MDAnalysisTests/coordinates/test_dlpoly.py: 31 warnings 751s testsuite/MDAnalysisTests/coordinates/test_gro.py: 2 warnings 751s testsuite/MDAnalysisTests/coordinates/test_netcdf.py: 4 warnings 751s testsuite/MDAnalysisTests/coordinates/test_pdb.py: 2 warnings 751s testsuite/MDAnalysisTests/coordinates/test_pdbqt.py: 12 warnings 751s testsuite/MDAnalysisTests/coordinates/test_pqr.py: 3 warnings 751s testsuite/MDAnalysisTests/coordinates/test_tng.py: 1 warning 751s testsuite/MDAnalysisTests/core/test_atom.py: 4 warnings 751s testsuite/MDAnalysisTests/core/test_universe.py: 5 warnings 751s testsuite/MDAnalysisTests/lib/test_util.py: 14 warnings 751s testsuite/MDAnalysisTests/topology/test_dlpoly.py: 45 warnings 751s testsuite/MDAnalysisTests/topology/test_pdbqt.py: 9 warnings 751s testsuite/MDAnalysisTests/topology/test_topology_str_types.py: 20 warnings 751s testsuite/MDAnalysisTests/topology/test_xyz.py: 8 warnings 751s testsuite/MDAnalysisTests/utils/test_streamio.py: 1 warning 751s /usr/lib/python3/dist-packages/MDAnalysis/topology/guessers.py:146: UserWarning: Failed to guess the mass for the following atom types: A 751s warnings.warn("Failed to guess the mass for the following atom types: {}".format(atom_type)) 751s 751s testsuite/MDAnalysisTests/analysis/test_contacts.py::TestContacts::test_villin_folded 751s testsuite/MDAnalysisTests/analysis/test_contacts.py::TestContacts::test_villin_unfolded 751s /tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/analysis/test_contacts.py:160: UserWarning: Reader has no dt information, set to 1.0 ps 751s results.append((ts.time, x.sum() / mask.sum())) 751s 751s testsuite/MDAnalysisTests/analysis/test_density.py::TestDensityAnalysis::test_userdefn_neqbox 751s testsuite/MDAnalysisTests/analysis/test_density.py::TestDensityAnalysis::test_userdefn_boxshape 751s testsuite/MDAnalysisTests/analysis/test_density.py::TestDensityAnalysis::test_ValueError_userdefn_gridcenter_shape 751s testsuite/MDAnalysisTests/analysis/test_density.py::TestDensityAnalysis::test_ValueError_userdefn_gridcenter_type 751s testsuite/MDAnalysisTests/analysis/test_density.py::TestDensityAnalysis::test_ValueError_userdefn_gridcenter_missing 751s testsuite/MDAnalysisTests/analysis/test_density.py::TestDensityAnalysis::test_ValueError_userdefn_xdim_type 751s testsuite/MDAnalysisTests/analysis/test_density.py::TestDensityAnalysis::test_ValueError_userdefn_xdim_nanvalue 751s /usr/lib/python3/dist-packages/MDAnalysis/analysis/density.py:423: UserWarning: Box padding (currently set at 2.0) is not used in user defined grids. 751s warnings.warn(msg) 751s 751s testsuite/MDAnalysisTests/analysis/test_density.py::TestDensityAnalysis::test_userdefn_neqbox 751s testsuite/MDAnalysisTests/analysis/test_density.py::TestDensityAnalysis::test_userdefn_boxshape 751s testsuite/MDAnalysisTests/analysis/test_density.py::TestDensityAnalysis::test_warn_userdefn_padding 751s /usr/lib/python3/dist-packages/MDAnalysis/analysis/density.py:556: UserWarning: Atom selection does not fit grid --- you may want to define a larger box 751s warnings.warn(msg) 751s 751s testsuite/MDAnalysisTests/analysis/test_diffusionmap.py: 1 warning 751s testsuite/MDAnalysisTests/analysis/test_helix_analysis.py: 1 warning 751s testsuite/MDAnalysisTests/analysis/test_hole2.py: 1 warning 751s testsuite/MDAnalysisTests/auxiliary/test_xvg.py: 4 warnings 751s testsuite/MDAnalysisTests/coordinates/test_chainreader.py: 3 warnings 751s testsuite/MDAnalysisTests/coordinates/test_copying.py: 14 warnings 751s testsuite/MDAnalysisTests/coordinates/test_dcd.py: 4 warnings 751s testsuite/MDAnalysisTests/coordinates/test_gro.py: 1 warning 751s testsuite/MDAnalysisTests/coordinates/test_h5md.py: 3 warnings 751s testsuite/MDAnalysisTests/coordinates/test_netcdf.py: 2 warnings 751s testsuite/MDAnalysisTests/coordinates/test_pdb.py: 76 warnings 751s testsuite/MDAnalysisTests/coordinates/test_pdbqt.py: 1 warning 751s testsuite/MDAnalysisTests/coordinates/test_trc.py: 8 warnings 751s testsuite/MDAnalysisTests/coordinates/test_trz.py: 1 warning 751s testsuite/MDAnalysisTests/coordinates/test_xdr.py: 13 warnings 751s testsuite/MDAnalysisTests/core/test_atomgroup.py: 14 warnings 751s testsuite/MDAnalysisTests/core/test_atomselections.py: 2 warnings 751s testsuite/MDAnalysisTests/core/test_copying.py: 1 warning 751s testsuite/MDAnalysisTests/core/test_group_traj_access.py: 9 warnings 751s testsuite/MDAnalysisTests/core/test_universe.py: 11 warnings 751s testsuite/MDAnalysisTests/lib/test_nsgrid.py: 3 warnings 751s testsuite/MDAnalysisTests/parallelism/test_multiprocessing.py: 6 warnings 751s testsuite/MDAnalysisTests/topology/test_pdb.py: 19 warnings 751s testsuite/MDAnalysisTests/topology/test_topology_str_types.py: 10 warnings 751s testsuite/MDAnalysisTests/topology/test_xpdb.py: 8 warnings 751s testsuite/MDAnalysisTests/transformations/test_nojump.py: 1 warning 751s testsuite/MDAnalysisTests/utils/test_modelling.py: 1 warning 751s testsuite/MDAnalysisTests/utils/test_persistence.py: 7 warnings 751s testsuite/MDAnalysisTests/utils/test_streamio.py: 2 warnings 751s /usr/lib/python3/dist-packages/MDAnalysis/topology/PDBParser.py:331: UserWarning: Element information is missing, elements attribute will not be populated. If needed these can be guessed using MDAnalysis.topology.guessers. 751s warnings.warn("Element information is missing, elements attribute " 751s 751s testsuite/MDAnalysisTests/analysis/test_dihedrals.py::TestRamachandran::test_ramachandran 751s testsuite/MDAnalysisTests/analysis/test_dihedrals.py::TestRamachandran::test_ramachandran_single_frame 751s testsuite/MDAnalysisTests/analysis/test_dihedrals.py::TestRamachandran::test_ramachandran_residue_selections 751s testsuite/MDAnalysisTests/analysis/test_dihedrals.py::TestRamachandran::test_ramachandran_attr_warning 751s /usr/lib/python3/dist-packages/MDAnalysis/analysis/dihedrals.py:400: UserWarning: Cannot determine phi and psi angles for the first or last residues 751s warnings.warn("Cannot determine phi and psi angles for the first " 751s 751s testsuite/MDAnalysisTests/analysis/test_dihedrals.py::TestJanin::test_janin 751s testsuite/MDAnalysisTests/analysis/test_dihedrals.py::TestJanin::test_janin_tpr 751s testsuite/MDAnalysisTests/analysis/test_dihedrals.py::TestJanin::test_janin_single_frame 751s testsuite/MDAnalysisTests/analysis/test_dihedrals.py::TestJanin::test_plot 751s testsuite/MDAnalysisTests/analysis/test_dihedrals.py::TestJanin::test_janin_attr_warning 751s /usr/lib/python3/dist-packages/MDAnalysis/analysis/dihedrals.py:582: UserWarning: All residues selected with 'resname ALA CYS* GLY PRO SER THR VAL' have been removed from the selection. 751s warnings.warn(f"All residues selected with '{select_remove}' " 751s 751s testsuite/MDAnalysisTests/analysis/test_encore.py: 5 warnings 751s testsuite/MDAnalysisTests/parallelism/test_multiprocessing.py: 32 warnings 751s testsuite/MDAnalysisTests/visualization/test_streamlines.py: 3 warnings 751s /usr/lib/python3.12/multiprocessing/popen_fork.py:66: DeprecationWarning: This process (pid=6454) is multi-threaded, use of fork() may lead to deadlocks in the child. 751s self.pid = os.fork() 751s 751s testsuite/MDAnalysisTests/analysis/test_helix_analysis.py::test_local_screw_angles_plane_circle 751s testsuite/MDAnalysisTests/analysis/test_helix_analysis.py::test_local_screw_angles_ortho_circle 751s testsuite/MDAnalysisTests/analysis/test_helix_analysis.py::test_local_screw_angles_parallel_axes 751s /usr/lib/python3/dist-packages/MDAnalysis/analysis/helix_analysis.py:181: RuntimeWarning: invalid value encountered in divide 751s cos = cos_perp, cos_ortho = np.matmul(refs, proj_plane.T)/norms 751s 751s testsuite/MDAnalysisTests/analysis/test_helix_analysis.py: 30 warnings 751s /usr/lib/python3/dist-packages/MDAnalysis/analysis/helix_analysis.py:262: RuntimeWarning: invalid value encountered in divide 751s local_axes = (cross_bi.T / mdamath.pnorm(cross_bi)).T # (n_res-3, 3) 751s 751s testsuite/MDAnalysisTests/analysis/test_helix_analysis.py: 16 warnings 751s /usr/lib/python3/dist-packages/numpy/core/_methods.py:206: RuntimeWarning: Degrees of freedom <= 0 for slice 751s ret = _var(a, axis=axis, dtype=dtype, out=out, ddof=ddof, 751s 751s testsuite/MDAnalysisTests/analysis/test_helix_analysis.py: 16 warnings 751s /usr/lib/python3/dist-packages/numpy/core/_methods.py:195: RuntimeWarning: invalid value encountered in divide 751s ret = um.true_divide( 751s 751s testsuite/MDAnalysisTests/analysis/test_helix_analysis.py: 16 warnings 751s /usr/lib/python3/dist-packages/numpy/core/_methods.py:198: RuntimeWarning: invalid value encountered in scalar divide 751s ret = ret.dtype.type(ret / rcount) 751s 751s testsuite/MDAnalysisTests/analysis/test_hole2.py: 1 warning 751s testsuite/MDAnalysisTests/coordinates/test_pdb.py: 15 warnings 751s testsuite/MDAnalysisTests/core/test_atomgroup.py: 14 warnings 751s testsuite/MDAnalysisTests/core/test_atomselections.py: 1 warning 751s testsuite/MDAnalysisTests/core/test_topologyattrs.py: 1 warning 751s testsuite/MDAnalysisTests/topology/test_pdb.py: 1 warning 751s testsuite/MDAnalysisTests/utils/test_modelling.py: 1 warning 751s /usr/lib/python3/dist-packages/MDAnalysis/coordinates/PDB.py:453: UserWarning: 1 A^3 CRYST1 record, this is usually a placeholder. Unit cell dimensions will be set to None. 751s warnings.warn("1 A^3 CRYST1 record," 751s 751s testsuite/MDAnalysisTests/analysis/test_hole2.py: 1 warning 751s testsuite/MDAnalysisTests/coordinates/test_pdb.py: 23 warnings 751s testsuite/MDAnalysisTests/coordinates/test_writer_api.py: 4 warnings 751s testsuite/MDAnalysisTests/core/test_atomgroup.py: 15 warnings 751s testsuite/MDAnalysisTests/utils/test_modelling.py: 1 warning 751s /usr/lib/python3/dist-packages/MDAnalysis/coordinates/PDB.py:777: UserWarning: Unit cell dimensions not found. CRYST1 record set to unitary values. 751s warnings.warn("Unit cell dimensions not found. " 751s 751s testsuite/MDAnalysisTests/analysis/test_hole2.py: 1 warning 751s testsuite/MDAnalysisTests/coordinates/test_netcdf.py: 2 warnings 751s testsuite/MDAnalysisTests/coordinates/test_pdb.py: 22 warnings 751s testsuite/MDAnalysisTests/coordinates/test_trz.py: 1 warning 751s testsuite/MDAnalysisTests/coordinates/test_writer_api.py: 4 warnings 751s testsuite/MDAnalysisTests/core/test_atomgroup.py: 15 warnings 751s testsuite/MDAnalysisTests/transformations/test_nojump.py: 1 warning 751s testsuite/MDAnalysisTests/utils/test_modelling.py: 2 warnings 751s /usr/lib/python3/dist-packages/MDAnalysis/coordinates/PDB.py:1153: UserWarning: Found no information for attr: 'elements' Using default value of ' ' 751s warnings.warn("Found no information for attr: '{}'" 751s 751s testsuite/MDAnalysisTests/analysis/test_hole2.py: 1 warning 751s testsuite/MDAnalysisTests/coordinates/test_h5md.py: 3 warnings 751s testsuite/MDAnalysisTests/coordinates/test_netcdf.py: 2 warnings 751s testsuite/MDAnalysisTests/coordinates/test_pdb.py: 32 warnings 751s testsuite/MDAnalysisTests/coordinates/test_trz.py: 1 warning 751s testsuite/MDAnalysisTests/coordinates/test_writer_api.py: 4 warnings 751s testsuite/MDAnalysisTests/core/test_atomgroup.py: 15 warnings 751s testsuite/MDAnalysisTests/topology/test_altloc.py: 1 warning 751s testsuite/MDAnalysisTests/transformations/test_nojump.py: 1 warning 751s testsuite/MDAnalysisTests/utils/test_modelling.py: 3 warnings 751s /usr/lib/python3/dist-packages/MDAnalysis/coordinates/PDB.py:1153: UserWarning: Found no information for attr: 'formalcharges' Using default value of '0' 751s warnings.warn("Found no information for attr: '{}'" 751s 751s testsuite/MDAnalysisTests/analysis/test_hydrogenbondautocorrel.py: 13 warnings 751s testsuite/MDAnalysisTests/analysis/test_hydrogenbondautocorrel_deprecated.py: 14 warnings 751s testsuite/MDAnalysisTests/analysis/test_persistencelength.py: 1 warning 751s testsuite/MDAnalysisTests/coordinates/test_copying.py: 16 warnings 751s testsuite/MDAnalysisTests/coordinates/test_trz.py: 5 warnings 751s testsuite/MDAnalysisTests/core/test_atomgroup.py: 39 warnings 751s testsuite/MDAnalysisTests/core/test_atomselections.py: 14 warnings 751s testsuite/MDAnalysisTests/core/test_topologyobjects.py: 1 warning 751s testsuite/MDAnalysisTests/core/test_universe.py: 3 warnings 751s testsuite/MDAnalysisTests/core/test_wrap.py: 13 warnings 751s testsuite/MDAnalysisTests/parallelism/test_multiprocessing.py: 1 warning 751s testsuite/MDAnalysisTests/topology/test_minimal.py: 1 warning 751s /usr/lib/python3/dist-packages/MDAnalysis/coordinates/TRZ.py:119: DeprecationWarning: The TRZ reader is deprecated and will be removed in MDAnalysis version 3.0.0 751s warnings.warn(wmsg, DeprecationWarning) 751s 751s testsuite/MDAnalysisTests/analysis/test_hydrogenbondautocorrel.py: 9 warnings 751s testsuite/MDAnalysisTests/analysis/test_hydrogenbondautocorrel_deprecated.py: 10 warnings 751s /usr/lib/python3/dist-packages/MDAnalysis/analysis/hydrogenbonds/hbond_autocorrel.py:377: RuntimeWarning: Desired number of sample points too high, using 6 751s warnings.warn("Desired number of sample points too high, using {0}" 751s 751s testsuite/MDAnalysisTests/analysis/test_hydrogenbondautocorrel_deprecated.py::TestHydrogenBondAutocorrel::test_continuous 751s /tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/analysis/test_hydrogenbondautocorrel_deprecated.py:62: DeprecationWarning: `HydrogenBondAutoCorrel` is deprecated! 751s `HydrogenBondAutoCorrel` will be removed in release 3.0.0. 751s The class was moved to MDAnalysis.analysis.hbonds.hbond_autocorrel. 751s hbond = HBAC(u, 751s 751s testsuite/MDAnalysisTests/analysis/test_hydrogenbondautocorrel_deprecated.py::TestHydrogenBondAutocorrel::test_continuous_excl 751s /tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/analysis/test_hydrogenbondautocorrel_deprecated.py:79: DeprecationWarning: `HydrogenBondAutoCorrel` is deprecated! 751s `HydrogenBondAutoCorrel` will be removed in release 3.0.0. 751s The class was moved to MDAnalysis.analysis.hbonds.hbond_autocorrel. 751s hbond = HBAC(u, 751s 751s testsuite/MDAnalysisTests/analysis/test_hydrogenbondautocorrel_deprecated.py::TestHydrogenBondAutocorrel::test_intermittent 751s /tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/analysis/test_hydrogenbondautocorrel_deprecated.py:99: DeprecationWarning: `HydrogenBondAutoCorrel` is deprecated! 751s `HydrogenBondAutoCorrel` will be removed in release 3.0.0. 751s The class was moved to MDAnalysis.analysis.hbonds.hbond_autocorrel. 751s hbond = HBAC(u, 751s 751s testsuite/MDAnalysisTests/analysis/test_hydrogenbondautocorrel_deprecated.py::TestHydrogenBondAutocorrel::test_intermittent_timecut 751s /tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/analysis/test_hydrogenbondautocorrel_deprecated.py:117: DeprecationWarning: `HydrogenBondAutoCorrel` is deprecated! 751s `HydrogenBondAutoCorrel` will be removed in release 3.0.0. 751s The class was moved to MDAnalysis.analysis.hbonds.hbond_autocorrel. 751s hbond = HBAC(u, 751s 751s testsuite/MDAnalysisTests/analysis/test_hydrogenbondautocorrel_deprecated.py::TestHydrogenBondAutocorrel::test_intermittent_excl 751s /tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/analysis/test_hydrogenbondautocorrel_deprecated.py:135: DeprecationWarning: `HydrogenBondAutoCorrel` is deprecated! 751s `HydrogenBondAutoCorrel` will be removed in release 3.0.0. 751s The class was moved to MDAnalysis.analysis.hbonds.hbond_autocorrel. 751s hbond = HBAC(u, 751s 751s testsuite/MDAnalysisTests/analysis/test_hydrogenbondautocorrel_deprecated.py::TestHydrogenBondAutocorrel::test_solve_continuous 751s /tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/analysis/test_hydrogenbondautocorrel_deprecated.py:156: DeprecationWarning: `HydrogenBondAutoCorrel` is deprecated! 751s `HydrogenBondAutoCorrel` will be removed in release 3.0.0. 751s The class was moved to MDAnalysis.analysis.hbonds.hbond_autocorrel. 751s hbond = HBAC(u, 751s 751s testsuite/MDAnalysisTests/analysis/test_hydrogenbondautocorrel_deprecated.py::TestHydrogenBondAutocorrel::test_solve_intermittent 751s /tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/analysis/test_hydrogenbondautocorrel_deprecated.py:181: DeprecationWarning: `HydrogenBondAutoCorrel` is deprecated! 751s `HydrogenBondAutoCorrel` will be removed in release 3.0.0. 751s The class was moved to MDAnalysis.analysis.hbonds.hbond_autocorrel. 751s hbond = HBAC(u, 751s 751s testsuite/MDAnalysisTests/analysis/test_hydrogenbondautocorrel_deprecated.py::TestHydrogenBondAutocorrel::test_wronglength_DA 751s /tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/analysis/test_hydrogenbondautocorrel_deprecated.py:210: DeprecationWarning: `HydrogenBondAutoCorrel` is deprecated! 751s `HydrogenBondAutoCorrel` will be removed in release 3.0.0. 751s The class was moved to MDAnalysis.analysis.hbonds.hbond_autocorrel. 751s HBAC(u, 751s 751s testsuite/MDAnalysisTests/analysis/test_hydrogenbondautocorrel_deprecated.py::TestHydrogenBondAutocorrel::test_exclusions 751s /tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/analysis/test_hydrogenbondautocorrel_deprecated.py:225: DeprecationWarning: `HydrogenBondAutoCorrel` is deprecated! 751s `HydrogenBondAutoCorrel` will be removed in release 3.0.0. 751s The class was moved to MDAnalysis.analysis.hbonds.hbond_autocorrel. 751s HBAC(u, 751s 751s testsuite/MDAnalysisTests/analysis/test_hydrogenbondautocorrel_deprecated.py::TestHydrogenBondAutocorrel::test_bond_type_VE 751s /tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/analysis/test_hydrogenbondautocorrel_deprecated.py:236: DeprecationWarning: `HydrogenBondAutoCorrel` is deprecated! 751s `HydrogenBondAutoCorrel` will be removed in release 3.0.0. 751s The class was moved to MDAnalysis.analysis.hbonds.hbond_autocorrel. 751s HBAC(u, 751s 751s testsuite/MDAnalysisTests/analysis/test_hydrogenbondautocorrel_deprecated.py::TestHydrogenBondAutocorrel::test_solve_before_run_VE 751s /tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/analysis/test_hydrogenbondautocorrel_deprecated.py:247: DeprecationWarning: `HydrogenBondAutoCorrel` is deprecated! 751s `HydrogenBondAutoCorrel` will be removed in release 3.0.0. 751s The class was moved to MDAnalysis.analysis.hbonds.hbond_autocorrel. 751s hbond = HBAC(u, 751s 751s testsuite/MDAnalysisTests/analysis/test_hydrogenbondautocorrel_deprecated.py::TestHydrogenBondAutocorrel::test_unslicable_traj_VE 751s /tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/analysis/test_hydrogenbondautocorrel_deprecated.py:262: DeprecationWarning: `HydrogenBondAutoCorrel` is deprecated! 751s `HydrogenBondAutoCorrel` will be removed in release 3.0.0. 751s The class was moved to MDAnalysis.analysis.hbonds.hbond_autocorrel. 751s HBAC( 751s 751s testsuite/MDAnalysisTests/analysis/test_hydrogenbondautocorrel_deprecated.py::TestHydrogenBondAutocorrel::test_repr 751s /tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/analysis/test_hydrogenbondautocorrel_deprecated.py:272: DeprecationWarning: `HydrogenBondAutoCorrel` is deprecated! 751s `HydrogenBondAutoCorrel` will be removed in release 3.0.0. 751s The class was moved to MDAnalysis.analysis.hbonds.hbond_autocorrel. 751s hbond = HBAC(u, 751s 751s testsuite/MDAnalysisTests/analysis/test_hydrogenbondautocorrel_deprecated.py::test_find_donors 751s /tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/analysis/test_hydrogenbondautocorrel_deprecated.py:300: DeprecationWarning: `find_hydrogen_donors` is deprecated! 751s `find_hydrogen_donors` will be removed in release 3.0.0. 751s The function was moved to MDAnalysis.analysis.hbonds.hbond_autocorrel. 751s D = hbonds.find_hydrogen_donors(H) 751s 751s testsuite/MDAnalysisTests/analysis/test_hydrogenbondautocorrel_deprecated.py::test_donors_nobonds 751s /tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/analysis/test_hydrogenbondautocorrel_deprecated.py:312: DeprecationWarning: `find_hydrogen_donors` is deprecated! 751s `find_hydrogen_donors` will be removed in release 3.0.0. 751s The function was moved to MDAnalysis.analysis.hbonds.hbond_autocorrel. 751s hbonds.find_hydrogen_donors(u.atoms) 751s 751s testsuite/MDAnalysisTests/analysis/test_hydrogenbonds_analysis.py::TestHydrogenBondAnalysisIdeal::test_count_by_type 751s /usr/lib/python3/dist-packages/MDAnalysis/analysis/hydrogenbonds/hbond_analysis.py:733: UserWarning: No hydrogen bonds were found given d-a cutoff of 3.0 between Donor, name O, and Acceptor, name O. 751s warnings.warn( 751s 751s testsuite/MDAnalysisTests/analysis/test_hydrogenbonds_analysis.py::TestHydrogenBondAnalysisIdeal::test_count_by_type 751s /usr/lib/python3/dist-packages/MDAnalysis/analysis/hydrogenbonds/hbond_analysis.py:765: UserWarning: No hydrogen bonds were found given angle of 120.0 between Donor, name O, and Acceptor, name O. 751s warnings.warn( 751s 751s testsuite/MDAnalysisTests/analysis/test_hydrogenbonds_analysis.py::TestHydrogenBondAnalysisIdeal::test_logging_step_not_1 751s testsuite/MDAnalysisTests/analysis/test_hydrogenbonds_analysis.py::TestHydrogenBondAnalysisNoRes::test_logging_step_not_1 751s testsuite/MDAnalysisTests/analysis/test_waterdynamics.py::test_SurvivalProbability_zeroMolecules 751s /usr/lib/python3/dist-packages/numpy/core/fromnumeric.py:3504: RuntimeWarning: Mean of empty slice. 751s return _methods._mean(a, axis=axis, dtype=dtype, 751s 751s testsuite/MDAnalysisTests/analysis/test_hydrogenbonds_analysis.py::TestHydrogenBondAnalysisIdeal::test_logging_step_not_1 751s testsuite/MDAnalysisTests/analysis/test_hydrogenbonds_analysis.py::TestHydrogenBondAnalysisNoRes::test_logging_step_not_1 751s testsuite/MDAnalysisTests/analysis/test_waterdynamics.py::test_SurvivalProbability_zeroMolecules 751s /usr/lib/python3/dist-packages/numpy/core/_methods.py:129: RuntimeWarning: invalid value encountered in scalar divide 751s ret = ret.dtype.type(ret / rcount) 751s 751s testsuite/MDAnalysisTests/analysis/test_hydrogenbonds_analysis.py::TestHydrogenBondAnalysisNoRes::test_count_by_type 751s testsuite/MDAnalysisTests/analysis/test_hydrogenbonds_analysis.py::TestHydrogenBondAnalysisNoRes::test_no_hydrogen_bonds 751s /usr/lib/python3/dist-packages/MDAnalysis/analysis/hydrogenbonds/hbond_analysis.py:733: UserWarning: No hydrogen bonds were found given d-a cutoff of 3.0 between Donor, type O, and Acceptor, type O. 751s warnings.warn( 751s 751s testsuite/MDAnalysisTests/analysis/test_hydrogenbonds_analysis.py::TestHydrogenBondAnalysisNoRes::test_count_by_type 751s /usr/lib/python3/dist-packages/MDAnalysis/analysis/hydrogenbonds/hbond_analysis.py:765: UserWarning: No hydrogen bonds were found given angle of 120.0 between Donor, type O, and Acceptor, type O. 751s warnings.warn( 751s 751s testsuite/MDAnalysisTests/analysis/test_hydrogenbonds_analysis.py::TestHydrogenBondAnalysisTIP3P_GuessAcceptors_GuessHydrogens_UseTopology_::test_no_hydrogens 751s /usr/lib/python3/dist-packages/MDAnalysis/analysis/hydrogenbonds/hbond_analysis.py:733: UserWarning: No hydrogen bonds were found given d-a cutoff of 3.0 between Donor, None, and Acceptor, name OH2. 751s warnings.warn( 751s 751s testsuite/MDAnalysisTests/analysis/test_hydrogenbonds_analysis.py::TestHydrogenBondAnalysisTIP3P_GuessAcceptors_GuessHydrogens_UseTopology_::test_no_hydrogens 751s /usr/lib/python3/dist-packages/MDAnalysis/analysis/hydrogenbonds/hbond_analysis.py:765: UserWarning: No hydrogen bonds were found given angle of 120.0 between Donor, None, and Acceptor, name OH2. 751s warnings.warn( 751s 751s testsuite/MDAnalysisTests/analysis/test_hydrogenbonds_analysis.py::TestHydrogenBondAnalysisEmptySelections::test_hbond_analysis 751s /usr/lib/python3/dist-packages/MDAnalysis/analysis/hydrogenbonds/hbond_analysis.py:355: UserWarning: donors_sel is an empty selection string - no hydrogen bonds will be found. This may be intended, but please check your selection. 751s warnings.warn(msg.format(sel)) 751s 751s testsuite/MDAnalysisTests/analysis/test_hydrogenbonds_analysis.py::TestHydrogenBondAnalysisEmptySelections::test_hbond_analysis 751s /usr/lib/python3/dist-packages/MDAnalysis/analysis/hydrogenbonds/hbond_analysis.py:355: UserWarning: hydrogens_sel is an empty selection string - no hydrogen bonds will be found. This may be intended, but please check your selection. 751s warnings.warn(msg.format(sel)) 751s 751s testsuite/MDAnalysisTests/analysis/test_hydrogenbonds_analysis.py::TestHydrogenBondAnalysisEmptySelections::test_hbond_analysis 751s /usr/lib/python3/dist-packages/MDAnalysis/analysis/hydrogenbonds/hbond_analysis.py:355: UserWarning: acceptors_sel is an empty selection string - no hydrogen bonds will be found. This may be intended, but please check your selection. 751s warnings.warn(msg.format(sel)) 751s 751s testsuite/MDAnalysisTests/analysis/test_hydrogenbonds_analysis.py::TestHydrogenBondAnalysisEmptySelections::test_hbond_analysis 751s /usr/lib/python3/dist-packages/MDAnalysis/core/groups.py:3218: UserWarning: Empty string to select atoms, empty group returned. 751s warnings.warn("Empty string to select atoms, empty group returned.", 751s 751s testsuite/MDAnalysisTests/analysis/test_hydrogenbonds_analysis.py::TestHydrogenBondAnalysisEmptySelections::test_hbond_analysis 751s /usr/lib/python3/dist-packages/MDAnalysis/analysis/hydrogenbonds/hbond_analysis.py:733: UserWarning: No hydrogen bonds were found given d-a cutoff of 3.0 between Donor, , and Acceptor, . 751s warnings.warn( 751s 751s testsuite/MDAnalysisTests/analysis/test_hydrogenbonds_analysis.py::TestHydrogenBondAnalysisEmptySelections::test_hbond_analysis 751s /usr/lib/python3/dist-packages/MDAnalysis/analysis/hydrogenbonds/hbond_analysis.py:765: UserWarning: No hydrogen bonds were found given angle of 150 between Donor, , and Acceptor, . 751s warnings.warn( 751s 751s testsuite/MDAnalysisTests/analysis/test_leaflet.py: 12 warnings 751s testsuite/MDAnalysisTests/lib/test_nsgrid.py: 1 warning 751s testsuite/MDAnalysisTests/lib/test_util.py: 14 warnings 751s testsuite/MDAnalysisTests/visualization/test_streamlines.py: 2 warnings 751s /usr/lib/python3/dist-packages/MDAnalysis/topology/guessers.py:146: UserWarning: Failed to guess the mass for the following atom types: G 751s warnings.warn("Failed to guess the mass for the following atom types: {}".format(atom_type)) 751s 751s testsuite/MDAnalysisTests/analysis/test_leaflet.py: 12 warnings 751s testsuite/MDAnalysisTests/core/test_universe.py: 2 warnings 751s testsuite/MDAnalysisTests/lib/test_nsgrid.py: 1 warning 751s testsuite/MDAnalysisTests/visualization/test_streamlines.py: 2 warnings 751s /usr/lib/python3/dist-packages/MDAnalysis/topology/guessers.py:146: UserWarning: Failed to guess the mass for the following atom types: R 751s warnings.warn("Failed to guess the mass for the following atom types: {}".format(atom_type)) 751s 751s testsuite/MDAnalysisTests/analysis/test_msd.py::TestMSDSimple::test_random_walk_u_simple 751s testsuite/MDAnalysisTests/analysis/test_pca.py::test_cosine_content 751s /usr/lib/python3/dist-packages/MDAnalysis/topology/PDBParser.py:348: UserWarning: Unknown element X found for some atoms. These have been given an empty element record. If needed they can be guessed using MDAnalysis.topology.guessers. 751s warnings.warn(wmsg) 751s 751s testsuite/MDAnalysisTests/analysis/test_msd.py: 1 warning 751s testsuite/MDAnalysisTests/analysis/test_pca.py: 1 warning 751s testsuite/MDAnalysisTests/coordinates/test_crd.py: 1 warning 751s testsuite/MDAnalysisTests/coordinates/test_fhiaims.py: 1 warning 751s testsuite/MDAnalysisTests/coordinates/test_gro.py: 1 warning 751s testsuite/MDAnalysisTests/coordinates/test_pdb.py: 6 warnings 751s testsuite/MDAnalysisTests/coordinates/test_pqr.py: 1 warning 751s testsuite/MDAnalysisTests/coordinates/test_xyz.py: 1 warning 751s testsuite/MDAnalysisTests/topology/test_guessers.py: 1 warning 751s testsuite/MDAnalysisTests/transformations/test_nojump.py: 1 warning 751s /usr/lib/python3/dist-packages/MDAnalysis/topology/guessers.py:146: UserWarning: Failed to guess the mass for the following atom types: X 751s warnings.warn("Failed to guess the mass for the following atom types: {}".format(atom_type)) 751s 751s testsuite/MDAnalysisTests/analysis/test_nuclinfo.py::test_phase_cp[RNAA-9-3.16497] 751s testsuite/MDAnalysisTests/analysis/test_nuclinfo.py::test_phase_cp[RNAA-9-3.16497] 751s testsuite/MDAnalysisTests/analysis/test_nuclinfo.py::test_phase_cp[RNAA-21-22.07721] 751s testsuite/MDAnalysisTests/analysis/test_nuclinfo.py::test_phase_cp[RNAA-21-22.07721] 751s /usr/lib/python3/dist-packages/MDAnalysis/analysis/nuclinfo.py:302: DeprecationWarning: Conversion of an array with ndim > 0 to a scalar is deprecated, and will error in future. Ensure you extract a single element from your array before performing this operation. (Deprecated NumPy 1.25.) 751s phase_ang = (atan2(D, C) + (pi / 2.)) * 180. / pi 751s 751s testsuite/MDAnalysisTests/analysis/test_psa.py::TestPSAnalysis::test_dist_mat_to_vec_i_greater_j 751s /usr/lib/python3/dist-packages/MDAnalysis/analysis/psa.py:733: UserWarning: Column index entered (j = 3 is smaller than row index (i = 4). Using symmetric element in upper triangle of distance matrix instead: i --> j, j --> i 751s warnings.warn("Column index entered (j = {:d} is smaller than row " 751s 751s testsuite/MDAnalysisTests/analysis/test_rdf.py: 20 warnings 751s /usr/lib/python3/dist-packages/MDAnalysis/core/universe.py:658: UserWarning: Reader has no dt information, set to 1.0 ps 751s dt=self.trajectory.ts.dt * step, 751s 751s testsuite/MDAnalysisTests/analysis/test_rdf.py::test_ignore_same_residues[residue-8] 751s testsuite/MDAnalysisTests/analysis/test_rdf.py::test_ignore_same_residues[segment-0] 751s testsuite/MDAnalysisTests/analysis/test_rdf.py::test_ignore_same_residues[chain-8] 751s /usr/lib/python3/dist-packages/MDAnalysis/analysis/rdf.py:347: DeprecationWarning: The `rdf` attribute was deprecated in MDAnalysis 2.0.0 and will be removed in MDAnalysis 3.0.0. Please use `results.rdf` instead 751s warnings.warn(wmsg, DeprecationWarning) 751s 751s testsuite/MDAnalysisTests/analysis/test_rdf_s.py: 1 warning 751s testsuite/MDAnalysisTests/coordinates/test_amber_inpcrd.py: 2 warnings 751s testsuite/MDAnalysisTests/core/test_atomgroup.py: 17 warnings 751s testsuite/MDAnalysisTests/lib/test_util.py: 14 warnings 751s /usr/lib/python3/dist-packages/MDAnalysis/topology/guessers.py:146: UserWarning: Failed to guess the mass for the following atom types: D 751s warnings.warn("Failed to guess the mass for the following atom types: {}".format(atom_type)) 751s 751s testsuite/MDAnalysisTests/analysis/test_rdf_s.py: 13 warnings 751s /usr/lib/python3/dist-packages/MDAnalysis/analysis/rdf.py:554: DeprecationWarning: The `u` attribute is superflous and will be removed in MDAnalysis 3.0.0. 751s warnings.warn("The `u` attribute is superflous and will be removed " 751s 751s testsuite/MDAnalysisTests/analysis/test_rdf_s.py::test_density[True-0.021915460340071267] 751s testsuite/MDAnalysisTests/analysis/test_rdf_s.py::test_overwrite_norm 751s /usr/lib/python3/dist-packages/MDAnalysis/analysis/rdf.py:567: DeprecationWarning: The `density` attribute was deprecated in MDAnalysis 2.3.0 and will be removed in MDAnalysis 3.0.0. Please use `norm=density` instead. 751s warnings.warn("The `density` attribute was deprecated in " 751s 751s testsuite/MDAnalysisTests/analysis/test_wbridge.py::TestWaterBridgeAnalysis::test_nodata 751s /usr/lib/python3/dist-packages/MDAnalysis/analysis/hydrogenbonds/wbridge_analysis.py:1782: MissingDataWarning: No data computed, do run() first. 751s warnings.warn(msg, category=MissingDataWarning) 751s 751s testsuite/MDAnalysisTests/analysis/test_wbridge.py: 32 warnings 751s /usr/lib/python3/dist-packages/MDAnalysis/analysis/hydrogenbonds/wbridge_analysis.py:1248: UserWarning: Reader has no dt information, set to 1.0 ps 751s self.timesteps.append(self._ts.time) 751s 751s testsuite/MDAnalysisTests/auxiliary/test_core.py: 1 warning 751s testsuite/MDAnalysisTests/auxiliary/test_xvg.py: 10 warnings 751s /usr/lib/python3/dist-packages/MDAnalysis/auxiliary/base.py:175: UserWarning: AuxStep does not support time selection. Reverting to default 751s warnings.warn("{} does not support time selection. Reverting to " 751s 751s testsuite/MDAnalysisTests/auxiliary/test_xvg.py: 10 warnings 751s /usr/lib/python3/dist-packages/MDAnalysis/auxiliary/base.py:211: UserWarning: AuxStep does not support data selection. Reverting to default 751s warnings.warn("{} does not support data selection. Reverting to " 751s 751s testsuite/MDAnalysisTests/coordinates/test_chainreader.py: 22 warnings 751s testsuite/MDAnalysisTests/coordinates/test_copying.py: 6 warnings 751s testsuite/MDAnalysisTests/coordinates/test_gro.py: 4 warnings 751s testsuite/MDAnalysisTests/coordinates/test_h5md.py: 1 warning 751s testsuite/MDAnalysisTests/coordinates/test_lammps.py: 1 warning 751s testsuite/MDAnalysisTests/coordinates/test_netcdf.py: 1 warning 751s testsuite/MDAnalysisTests/coordinates/test_xyz.py: 2 warnings 751s testsuite/MDAnalysisTests/core/test_universe.py: 1 warning 751s testsuite/MDAnalysisTests/parallelism/test_multiprocessing.py: 4 warnings 751s testsuite/MDAnalysisTests/utils/test_persistence.py: 5 warnings 751s /usr/lib/python3/dist-packages/MDAnalysis/coordinates/base.py:725: UserWarning: Reader has no dt information, set to 1.0 ps 751s return self.ts.dt 751s 751s testsuite/MDAnalysisTests/coordinates/test_chainreader.py: 1 warning 751s testsuite/MDAnalysisTests/coordinates/test_lammps.py: 34 warnings 751s testsuite/MDAnalysisTests/coordinates/test_windows.py: 20 warnings 751s testsuite/MDAnalysisTests/parallelism/test_multiprocessing.py: 1 warning 751s testsuite/MDAnalysisTests/topology/test_lammpsdata.py: 4 warnings 751s /usr/lib/python3/dist-packages/MDAnalysis/coordinates/LAMMPS.py:598: UserWarning: Reader has no dt information, set to 1.0 ps 751s ts.data['time'] = step_num * ts.dt 751s 751s testsuite/MDAnalysisTests/coordinates/test_chainreader.py::TestChainReaderFormats::test_set_all_formats 751s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_reader_copied_extra_attributes[ref_reader_extra_args12] 751s testsuite/MDAnalysisTests/coordinates/test_h5md.py::TestH5MDWriterWithRealTrajectory::test_step_from_frame 751s /usr/lib/python3/dist-packages/_pytest/unraisableexception.py:85: PytestUnraisableExceptionWarning: Exception ignored in: 751s 751s Traceback (most recent call last): 751s File "/usr/lib/python3/dist-packages/MDAnalysis/coordinates/base.py", line 1532, in __del__ 751s self.close() 751s File "/usr/lib/python3/dist-packages/MDAnalysis/coordinates/chain.py", line 597, in close 751s self._apply('close') 751s File "/usr/lib/python3/dist-packages/MDAnalysis/coordinates/chain.py", line 504, in _apply 751s return [reader.__getattribute__(method)(**kwargs) for reader in self.readers] 751s ^^^^^^^^^^^^ 751s AttributeError: 'ChainReader' object has no attribute 'readers' 751s 751s warnings.warn(pytest.PytestUnraisableExceptionWarning(msg)) 751s 751s testsuite/MDAnalysisTests/coordinates/test_chainreader.py::TestChainReaderContinuous::test_missing 751s testsuite/MDAnalysisTests/coordinates/test_trc.py::TestTRCReaderVacuumBox::test_initial_frame_is_0 751s /usr/lib/python3/dist-packages/MDAnalysis/coordinates/chain.py:349: UserWarning: Missing frame in continuous chain 751s warnings.warn("Missing frame in continuous chain", UserWarning) 751s 751s testsuite/MDAnalysisTests/coordinates/test_copying.py: 1 warning 751s testsuite/MDAnalysisTests/coordinates/test_gro.py: 63 warnings 751s testsuite/MDAnalysisTests/coordinates/test_h5md.py: 23 warnings 751s testsuite/MDAnalysisTests/coordinates/test_xyz.py: 44 warnings 751s /usr/lib/python3/dist-packages/MDAnalysis/auxiliary/base.py:595: UserWarning: Reader has no dt information, set to 1.0 ps 751s time_frame_0 = ts.time - ts.frame*ts.dt # assumes ts.dt is constant 751s 751s testsuite/MDAnalysisTests/coordinates/test_copying.py: 1 warning 751s testsuite/MDAnalysisTests/coordinates/test_gro.py: 63 warnings 751s testsuite/MDAnalysisTests/coordinates/test_h5md.py: 23 warnings 751s testsuite/MDAnalysisTests/coordinates/test_xyz.py: 44 warnings 751s /usr/lib/python3/dist-packages/MDAnalysis/auxiliary/base.py:597: UserWarning: Reader has no dt information, set to 1.0 ps 751s frame_index = int(math.floor((time_step-time_frame_0+ts.dt/2.)/ts.dt)) 751s 751s testsuite/MDAnalysisTests/coordinates/test_copying.py: 1 warning 751s testsuite/MDAnalysisTests/coordinates/test_gro.py: 63 warnings 751s testsuite/MDAnalysisTests/coordinates/test_h5md.py: 23 warnings 751s testsuite/MDAnalysisTests/coordinates/test_xyz.py: 44 warnings 751s /usr/lib/python3/dist-packages/MDAnalysis/auxiliary/base.py:622: UserWarning: Reader has no dt information, set to 1.0 ps 751s step = int(math.floor((ts.time-ts.dt/2-self.initial_time)/self.dt)) 751s 751s testsuite/MDAnalysisTests/coordinates/test_copying.py: 1 warning 751s testsuite/MDAnalysisTests/coordinates/test_gro.py: 63 warnings 751s testsuite/MDAnalysisTests/coordinates/test_xyz.py: 44 warnings 751s /usr/lib/python3/dist-packages/MDAnalysis/auxiliary/base.py:457: UserWarning: Reader has no dt information, set to 1.0 ps 751s self._add_step_to_frame_data(ts.time) 751s 751s testsuite/MDAnalysisTests/coordinates/test_crd.py::TestCRDWriterMissingAttrs::test_write[resnames] 751s /usr/lib/python3/dist-packages/MDAnalysis/coordinates/CRD.py:248: UserWarning: Supplied AtomGroup was missing the following attributes: resnames, tempfactors. These will be written with default values. 751s warnings.warn( 751s 751s testsuite/MDAnalysisTests/coordinates/test_crd.py: 3 warnings 751s testsuite/MDAnalysisTests/coordinates/test_gro.py: 2 warnings 751s testsuite/MDAnalysisTests/coordinates/test_pdb.py: 2 warnings 751s testsuite/MDAnalysisTests/coordinates/test_pqr.py: 3 warnings 751s /usr/lib/python3/dist-packages/MDAnalysis/topology/guessers.py:146: UserWarning: Failed to guess the mass for the following atom types: AL 751s warnings.warn("Failed to guess the mass for the following atom types: {}".format(atom_type)) 751s 751s testsuite/MDAnalysisTests/coordinates/test_crd.py: 3 warnings 751s testsuite/MDAnalysisTests/coordinates/test_gro.py: 2 warnings 751s testsuite/MDAnalysisTests/coordinates/test_pdb.py: 2 warnings 751s testsuite/MDAnalysisTests/coordinates/test_pqr.py: 3 warnings 751s /usr/lib/python3/dist-packages/MDAnalysis/topology/guessers.py:146: UserWarning: Failed to guess the mass for the following atom types: BE 751s warnings.warn("Failed to guess the mass for the following atom types: {}".format(atom_type)) 751s 751s testsuite/MDAnalysisTests/coordinates/test_crd.py::TestCRDWriterMissingAttrs::test_write[resids] 751s /usr/lib/python3/dist-packages/MDAnalysis/coordinates/CRD.py:248: UserWarning: Supplied AtomGroup was missing the following attributes: resids, tempfactors. These will be written with default values. 751s warnings.warn( 751s 751s testsuite/MDAnalysisTests/coordinates/test_crd.py::TestCRDWriterMissingAttrs::test_write[names] 751s /usr/lib/python3/dist-packages/MDAnalysis/coordinates/CRD.py:248: UserWarning: Supplied AtomGroup was missing the following attributes: names, tempfactors. These will be written with default values. 751s warnings.warn( 751s 751s testsuite/MDAnalysisTests/coordinates/test_crd.py::TestCRDWriterMissingAttrs::test_write[tempfactors] 751s /usr/lib/python3/dist-packages/MDAnalysis/coordinates/CRD.py:248: UserWarning: Supplied AtomGroup was missing the following attributes: tempfactors, tempfactors. These will be written with default values. 751s warnings.warn( 751s 751s testsuite/MDAnalysisTests/coordinates/test_dcd.py: 2 warnings 751s testsuite/MDAnalysisTests/coordinates/test_fhiaims.py: 1 warning 751s testsuite/MDAnalysisTests/coordinates/test_gro.py: 9 warnings 751s testsuite/MDAnalysisTests/coordinates/test_h5md.py: 2 warnings 751s testsuite/MDAnalysisTests/coordinates/test_xdr.py: 4 warnings 751s testsuite/MDAnalysisTests/coordinates/test_xyz.py: 8 warnings 751s /tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/coordinates/base.py:749: UserWarning: Reader has no dt information, set to 1.0 ps 751s if not np.allclose(A.time, B.time): 751s 751s testsuite/MDAnalysisTests/coordinates/test_dcd.py::TestDCDReader::test_empty_dcd 751s /usr/lib/python3/dist-packages/_pytest/unraisableexception.py:85: PytestUnraisableExceptionWarning: Exception ignored in: 751s 751s Traceback (most recent call last): 751s File "/usr/lib/python3/dist-packages/MDAnalysis/coordinates/base.py", line 1532, in __del__ 751s self.close() 751s File "/usr/lib/python3/dist-packages/MDAnalysis/coordinates/DCD.py", line 181, in close 751s self._file.close() 751s ^^^^^^^^^^ 751s AttributeError: 'DCDReader' object has no attribute '_file' 751s 751s warnings.warn(pytest.PytestUnraisableExceptionWarning(msg)) 751s 751s testsuite/MDAnalysisTests/coordinates/test_dcd.py::TestDCDWriter::test_no_container 751s testsuite/MDAnalysisTests/coordinates/test_dcd.py::test_write_no_natoms 751s testsuite/MDAnalysisTests/coordinates/test_lammps.py::TestLAMMPSDCDWriterClass::test_wrong_time_unit 751s testsuite/MDAnalysisTests/coordinates/test_lammps.py::TestLAMMPSDCDWriterClass::test_wrong_unit 751s /usr/lib/python3/dist-packages/_pytest/unraisableexception.py:85: PytestUnraisableExceptionWarning: Exception ignored in: 751s 751s Traceback (most recent call last): 751s File "/usr/lib/python3/dist-packages/MDAnalysis/coordinates/DCD.py", line 482, in __del__ 751s self.close() 751s File "/usr/lib/python3/dist-packages/MDAnalysis/coordinates/DCD.py", line 479, in close 751s self._file.close() 751s ^^^^^^^^^^ 751s AttributeError: 'DCDWriter' object has no attribute '_file' 751s 751s warnings.warn(pytest.PytestUnraisableExceptionWarning(msg)) 751s 751s testsuite/MDAnalysisTests/coordinates/test_dcd.py: 1 warning 751s testsuite/MDAnalysisTests/coordinates/test_netcdf.py: 97 warnings 751s testsuite/MDAnalysisTests/coordinates/test_trj.py: 3 warnings 751s testsuite/MDAnalysisTests/coordinates/test_windows.py: 2 warnings 751s testsuite/MDAnalysisTests/core/test_atomselections.py: 3 warnings 751s testsuite/MDAnalysisTests/topology/test_top.py: 63 warnings 751s testsuite/MDAnalysisTests/topology/test_topology_str_types.py: 10 warnings 751s /usr/lib/python3/dist-packages/MDAnalysis/topology/TOPParser.py:299: UserWarning: ATOMIC_NUMBER record not found, elements attribute will not be populated. If needed these can be guessed using MDAnalysis.topology.guessers. 751s warnings.warn(msg) 751s 751s testsuite/MDAnalysisTests/coordinates/test_fhiaims.py::TestFHIAIMSWriter::test_writer_no_atom_names 751s testsuite/MDAnalysisTests/coordinates/test_writer_api.py::test_write_with_atomgroup[FHIAIMSWriter] 751s testsuite/MDAnalysisTests/coordinates/test_writer_api.py::test_write_with_universe[FHIAIMSWriter] 751s /usr/lib/python3/dist-packages/MDAnalysis/coordinates/FHIAIMS.py:281: UserWarning: Supplied AtomGroup was missing the following attributes: names, ids. These will be written with default values. 751s warnings.warn( 751s 751s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROReader::test_ts_dt_matches_reader 751s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROReaderNoConversion::test_ts_dt_matches_reader 751s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROReaderIncompleteVelocities::test_ts_dt_matches_reader 751s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROBZ2Reader::test_ts_dt_matches_reader 751s testsuite/MDAnalysisTests/coordinates/test_h5md.py::TestH5MDReaderBaseAPI::test_ts_dt_matches_reader 751s testsuite/MDAnalysisTests/coordinates/test_xyz.py::TestXYZReader::test_ts_dt_matches_reader 751s testsuite/MDAnalysisTests/coordinates/test_xyz.py::Test_XYZBZReader::test_ts_dt_matches_reader 751s /tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/coordinates/base.py:261: UserWarning: Reader has no dt information, set to 1.0 ps 751s assert_equal(reader.ts.dt, reader.dt) 751s 751s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROReader::test_pickle_reader 751s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROReaderNoConversion::test_pickle_reader 751s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROReaderIncompleteVelocities::test_pickle_reader 751s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROBZ2Reader::test_pickle_reader 751s testsuite/MDAnalysisTests/coordinates/test_h5md.py::TestH5MDReaderBaseAPI::test_pickle_reader 751s testsuite/MDAnalysisTests/coordinates/test_xyz.py::TestXYZReader::test_pickle_reader 751s testsuite/MDAnalysisTests/coordinates/test_xyz.py::Test_XYZBZReader::test_pickle_reader 751s /tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/coordinates/base.py:442: UserWarning: Reader has no dt information, set to 1.0 ps 751s reader_p = pickle.loads(pickle.dumps(reader)) 751s 751s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROWriter::test_write_no_resnames 751s /usr/lib/python3/dist-packages/MDAnalysis/coordinates/GRO.py:421: UserWarning: Supplied AtomGroup was missing the following attributes: resnames. These will be written with default values. Alternatively these can be supplied as keyword arguments. 751s warnings.warn( 751s 751s testsuite/MDAnalysisTests/coordinates/test_gro.py: 4 warnings 751s testsuite/MDAnalysisTests/coordinates/test_writer_api.py: 2 warnings 751s testsuite/MDAnalysisTests/core/test_atomgroup.py: 8 warnings 751s /usr/lib/python3/dist-packages/MDAnalysis/coordinates/GRO.py:479: UserWarning: missing dimension - setting unit cell to zeroed box [0., 0., 0.] 751s warnings.warn(wmsg) 751s 751s testsuite/MDAnalysisTests/coordinates/test_gro.py: 3 warnings 751s testsuite/MDAnalysisTests/core/test_atomgroup.py: 8 warnings 751s /usr/lib/python3/dist-packages/MDAnalysis/coordinates/GRO.py:228: UserWarning: Empty box [0., 0., 0.] found - treating as missing unit cell. Dimensions set to `None`. 751s warnings.warn(wmsg) 751s 751s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROWriter::test_write_no_resids 751s /usr/lib/python3/dist-packages/MDAnalysis/coordinates/GRO.py:421: UserWarning: Supplied AtomGroup was missing the following attributes: resids. These will be written with default values. Alternatively these can be supplied as keyword arguments. 751s warnings.warn( 751s 751s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROWriter::test_writer_no_atom_names 751s /usr/lib/python3/dist-packages/MDAnalysis/coordinates/GRO.py:421: UserWarning: Supplied AtomGroup was missing the following attributes: names. These will be written with default values. Alternatively these can be supplied as keyword arguments. 751s warnings.warn( 751s 751s testsuite/MDAnalysisTests/coordinates/test_gro.py: 28 warnings 751s /usr/lib/python3/dist-packages/MDAnalysis/coordinates/GRO.py:216: UserWarning: Not all velocities were present. Unset velocities set to zero. 751s warnings.warn("Not all velocities were present. " 751s 751s testsuite/MDAnalysisTests/coordinates/test_gro.py::test_growriter_resid_truncation 751s /usr/lib/python3/dist-packages/MDAnalysis/coordinates/GRO.py:421: UserWarning: Supplied AtomGroup was missing the following attributes: names, resnames. These will be written with default values. Alternatively these can be supplied as keyword arguments. 751s warnings.warn( 751s 751s testsuite/MDAnalysisTests/coordinates/test_gsd.py::test_gsd_reader_raises 751s /usr/lib/python3/dist-packages/_pytest/unraisableexception.py:85: PytestUnraisableExceptionWarning: Exception ignored in: 751s 751s Traceback (most recent call last): 751s File "/usr/lib/python3/dist-packages/MDAnalysis/coordinates/base.py", line 1530, in __del__ 751s for aux in self.aux_list: 751s ^^^^^^^^^^^^^ 751s File "/usr/lib/python3/dist-packages/MDAnalysis/coordinates/base.py", line 1170, in aux_list 751s return self._auxs.keys() 751s ^^^^^^^^^^ 751s AttributeError: 'GSDReader' object has no attribute '_auxs' 751s 751s warnings.warn(pytest.PytestUnraisableExceptionWarning(msg)) 751s 751s testsuite/MDAnalysisTests/coordinates/test_h5md.py::TestH5MDReaderBaseAPI::test_pickle_next_ts_reader 751s testsuite/MDAnalysisTests/coordinates/test_xyz.py::TestXYZReader::test_pickle_next_ts_reader 751s testsuite/MDAnalysisTests/coordinates/test_xyz.py::Test_XYZBZReader::test_pickle_next_ts_reader 751s /tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/coordinates/base.py:604: UserWarning: Reader has no dt information, set to 1.0 ps 751s reader_p = pickle.loads(pickle.dumps(reader)) 751s 751s testsuite/MDAnalysisTests/coordinates/test_h5md.py::TestH5MDReaderBaseAPI::test_pickle_last_ts_reader 751s testsuite/MDAnalysisTests/coordinates/test_xyz.py::TestXYZReader::test_pickle_last_ts_reader 751s testsuite/MDAnalysisTests/coordinates/test_xyz.py::Test_XYZBZReader::test_pickle_last_ts_reader 751s /tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/coordinates/base.py:612: UserWarning: Reader has no dt information, set to 1.0 ps 751s reader_p = pickle.loads(pickle.dumps(reader)) 751s 751s testsuite/MDAnalysisTests/coordinates/test_h5md.py::TestH5MDReaderWithRealTrajectory::test_wrong_driver 751s /usr/lib/python3/dist-packages/_pytest/unraisableexception.py:85: PytestUnraisableExceptionWarning: Exception ignored in: 751s 751s Traceback (most recent call last): 751s File "/usr/lib/python3/dist-packages/MDAnalysis/coordinates/base.py", line 1532, in __del__ 751s self.close() 751s File "/usr/lib/python3/dist-packages/MDAnalysis/coordinates/H5MD.py", line 739, in close 751s self._file.close() 751s ^^^^^^^^^^ 751s AttributeError: 'H5MDReader' object has no attribute '_file' 751s 751s warnings.warn(pytest.PytestUnraisableExceptionWarning(msg)) 751s 751s testsuite/MDAnalysisTests/coordinates/test_h5md.py: 3 warnings 751s testsuite/MDAnalysisTests/coordinates/test_netcdf.py: 2 warnings 751s testsuite/MDAnalysisTests/coordinates/test_pdb.py: 17 warnings 751s testsuite/MDAnalysisTests/coordinates/test_trz.py: 1 warning 751s testsuite/MDAnalysisTests/coordinates/test_writer_api.py: 4 warnings 751s testsuite/MDAnalysisTests/core/test_atomgroup.py: 15 warnings 751s testsuite/MDAnalysisTests/transformations/test_nojump.py: 1 warning 751s testsuite/MDAnalysisTests/utils/test_modelling.py: 2 warnings 751s /usr/lib/python3/dist-packages/MDAnalysis/coordinates/PDB.py:1153: UserWarning: Found no information for attr: 'altLocs' Using default value of ' ' 751s warnings.warn("Found no information for attr: '{}'" 751s 751s testsuite/MDAnalysisTests/coordinates/test_h5md.py: 3 warnings 751s testsuite/MDAnalysisTests/coordinates/test_netcdf.py: 2 warnings 751s testsuite/MDAnalysisTests/coordinates/test_pdb.py: 17 warnings 751s testsuite/MDAnalysisTests/coordinates/test_trz.py: 1 warning 751s testsuite/MDAnalysisTests/coordinates/test_writer_api.py: 4 warnings 751s testsuite/MDAnalysisTests/core/test_atomgroup.py: 15 warnings 751s testsuite/MDAnalysisTests/transformations/test_nojump.py: 1 warning 751s testsuite/MDAnalysisTests/utils/test_modelling.py: 2 warnings 751s /usr/lib/python3/dist-packages/MDAnalysis/coordinates/PDB.py:1153: UserWarning: Found no information for attr: 'icodes' Using default value of ' ' 751s warnings.warn("Found no information for attr: '{}'" 751s 751s testsuite/MDAnalysisTests/coordinates/test_h5md.py: 3 warnings 751s testsuite/MDAnalysisTests/coordinates/test_netcdf.py: 2 warnings 751s testsuite/MDAnalysisTests/coordinates/test_pdb.py: 17 warnings 751s testsuite/MDAnalysisTests/coordinates/test_trz.py: 1 warning 751s testsuite/MDAnalysisTests/coordinates/test_writer_api.py: 4 warnings 751s testsuite/MDAnalysisTests/core/test_atomgroup.py: 15 warnings 751s testsuite/MDAnalysisTests/transformations/test_nojump.py: 1 warning 751s testsuite/MDAnalysisTests/utils/test_modelling.py: 2 warnings 751s /usr/lib/python3/dist-packages/MDAnalysis/coordinates/PDB.py:1153: UserWarning: Found no information for attr: 'occupancies' Using default value of '1.0' 751s warnings.warn("Found no information for attr: '{}'" 751s 751s testsuite/MDAnalysisTests/coordinates/test_h5md.py: 3 warnings 751s testsuite/MDAnalysisTests/coordinates/test_netcdf.py: 2 warnings 751s testsuite/MDAnalysisTests/coordinates/test_pdb.py: 17 warnings 751s testsuite/MDAnalysisTests/coordinates/test_trz.py: 1 warning 751s testsuite/MDAnalysisTests/coordinates/test_writer_api.py: 4 warnings 751s testsuite/MDAnalysisTests/core/test_atomgroup.py: 15 warnings 751s testsuite/MDAnalysisTests/transformations/test_nojump.py: 1 warning 751s testsuite/MDAnalysisTests/utils/test_modelling.py: 2 warnings 751s /usr/lib/python3/dist-packages/MDAnalysis/coordinates/PDB.py:1153: UserWarning: Found no information for attr: 'tempfactors' Using default value of '0.0' 751s warnings.warn("Found no information for attr: '{}'" 751s 751s testsuite/MDAnalysisTests/coordinates/test_h5md.py: 3 warnings 751s testsuite/MDAnalysisTests/coordinates/test_netcdf.py: 2 warnings 751s testsuite/MDAnalysisTests/coordinates/test_pdb.py: 16 warnings 751s testsuite/MDAnalysisTests/coordinates/test_trz.py: 1 warning 751s testsuite/MDAnalysisTests/coordinates/test_writer_api.py: 4 warnings 751s testsuite/MDAnalysisTests/core/test_atomgroup.py: 15 warnings 751s testsuite/MDAnalysisTests/transformations/test_nojump.py: 1 warning 751s testsuite/MDAnalysisTests/utils/test_modelling.py: 2 warnings 751s /usr/lib/python3/dist-packages/MDAnalysis/coordinates/PDB.py:1153: UserWarning: Found no information for attr: 'record_types' Using default value of 'ATOM' 751s warnings.warn("Found no information for attr: '{}'" 751s 751s testsuite/MDAnalysisTests/coordinates/test_h5md.py::TestH5PYNotInstalled::test_reader_no_h5py 751s /usr/lib/python3/dist-packages/_pytest/unraisableexception.py:85: PytestUnraisableExceptionWarning: Exception ignored in: 751s 751s Traceback (most recent call last): 751s File "/usr/lib/python3/dist-packages/MDAnalysis/coordinates/base.py", line 1530, in __del__ 751s for aux in self.aux_list: 751s ^^^^^^^^^^^^^ 751s File "/usr/lib/python3/dist-packages/MDAnalysis/coordinates/base.py", line 1170, in aux_list 751s return self._auxs.keys() 751s ^^^^^^^^^^ 751s AttributeError: 'H5MDReader' object has no attribute '_auxs' 751s 751s warnings.warn(pytest.PytestUnraisableExceptionWarning(msg)) 751s 751s testsuite/MDAnalysisTests/coordinates/test_lammps.py: 33 warnings 751s testsuite/MDAnalysisTests/coordinates/test_windows.py: 20 warnings 751s testsuite/MDAnalysisTests/topology/test_lammpsdata.py: 18 warnings 751s /usr/lib/python3/dist-packages/MDAnalysis/topology/LAMMPSParser.py:632: UserWarning: Guessed all Masses to 1.0 751s warnings.warn('Guessed all Masses to 1.0') 751s 751s testsuite/MDAnalysisTests/coordinates/test_lammps.py::TestLAMMPSDCDReader::test_wrong_time_unit 751s testsuite/MDAnalysisTests/coordinates/test_lammps.py::TestLAMMPSDCDReader::test_wrong_unit 751s /usr/lib/python3/dist-packages/_pytest/unraisableexception.py:85: PytestUnraisableExceptionWarning: Exception ignored in: 751s 751s Traceback (most recent call last): 751s File "/usr/lib/python3/dist-packages/MDAnalysis/coordinates/base.py", line 1530, in __del__ 751s for aux in self.aux_list: 751s ^^^^^^^^^^^^^ 751s File "/usr/lib/python3/dist-packages/MDAnalysis/coordinates/base.py", line 1170, in aux_list 751s return self._auxs.keys() 751s ^^^^^^^^^^ 751s AttributeError: 'DCDReader' object has no attribute '_auxs' 751s 751s warnings.warn(pytest.PytestUnraisableExceptionWarning(msg)) 751s 751s testsuite/MDAnalysisTests/coordinates/test_memory.py::TestMemoryReader::test_filename_array 751s /usr/lib/python3/dist-packages/MDAnalysis/coordinates/DCD.py:326: DeprecationWarning: asel argument to timeseries will be renamed to'atomgroup' in 3.0, see #3911 751s warnings.warn( 751s 751s testsuite/MDAnalysisTests/coordinates/test_netcdf.py::TestNCDFReader4::test_chain_times 751s /usr/lib/python3/dist-packages/MDAnalysis/coordinates/TRJ.py:554: UserWarning: NCDF trajectory does not contain `time` information; `time` will be set as an increasing index 751s warnings.warn(wmsg) 751s 751s testsuite/MDAnalysisTests/coordinates/test_netcdf.py::TestNCDFReader4::test_chain_times 751s testsuite/MDAnalysisTests/coordinates/test_netcdf.py::TestNCDFReader4::test_warn_user_no_time_information 751s /usr/lib/python3/dist-packages/MDAnalysis/coordinates/TRJ.py:667: UserWarning: Reader has no dt information, set to 1.0 ps 751s ts.time) # in-place ! (hope this works...) 751s 751s testsuite/MDAnalysisTests/coordinates/test_netcdf.py::TestNCDFReader4::test_chain_times 751s /tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/coordinates/test_netcdf.py:316: UserWarning: Reader has no dt information, set to 1.0 ps 751s time_list = [ts.time for ts in u.trajectory] 751s 751s testsuite/MDAnalysisTests/coordinates/test_netcdf.py::TestNCDFWriter::test_write_trajectory_netCDF4 751s testsuite/MDAnalysisTests/coordinates/test_netcdf.py::TestNCDFWriterTZ2::test_write_trajectory_netCDF4 751s /tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/coordinates/test_netcdf.py:700: RuntimeWarning: Cannot close a netcdf_file opened with mmap=True, when netcdf_variables or arrays referring to its data still exist. All data arrays obtained from such files refer directly to data on disk, and must be copied before the file can be cleanly closed. (See netcdf_file docstring for more information on mmap.) 751s return self._test_write_trajectory(universe, outfile) 751s 751s testsuite/MDAnalysisTests/coordinates/test_netcdf.py::TestNCDFWriter::test_write_trajectory_netcdf 751s testsuite/MDAnalysisTests/coordinates/test_netcdf.py::TestNCDFWriterTZ2::test_write_trajectory_netcdf 751s testsuite/MDAnalysisTests/coordinates/test_netcdf.py::TestScipyScaleFactors::test_write_read_factors_default 751s testsuite/MDAnalysisTests/coordinates/test_netcdf.py::TestScipyScaleFactors::test_write_read_write[-2.0--2.0--2.0--2.0--2.0--2.0] 751s testsuite/MDAnalysisTests/coordinates/test_netcdf.py::TestScipyScaleFactors::test_write_read_write[1.0-1.0-1.0-1.0-1.0-1.0] 751s testsuite/MDAnalysisTests/coordinates/test_netcdf.py::TestScipyScaleFactors::test_write_read_write[2.0-4.0-8.0-16.0-32.0-64.0] 751s /usr/lib/python3/dist-packages/MDAnalysis/coordinates/TRJ.py:969: UserWarning: Could not find netCDF4 module. Falling back to MUCH slower scipy.io.netcdf implementation for writing. 751s warnings.warn(wmsg) 751s 751s testsuite/MDAnalysisTests/coordinates/test_netcdf.py::TestNCDFWriter::test_write_trajectory_netcdf 751s testsuite/MDAnalysisTests/coordinates/test_netcdf.py::TestNCDFWriterTZ2::test_write_trajectory_netcdf 751s /tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/coordinates/test_netcdf.py:711: RuntimeWarning: Cannot close a netcdf_file opened with mmap=True, when netcdf_variables or arrays referring to its data still exist. All data arrays obtained from such files refer directly to data on disk, and must be copied before the file can be cleanly closed. (See netcdf_file docstring for more information on mmap.) 751s return self._test_write_trajectory(universe, outfile) 751s 751s testsuite/MDAnalysisTests/coordinates/test_netcdf.py: 2 warnings 751s testsuite/MDAnalysisTests/coordinates/test_pdb.py: 19 warnings 751s testsuite/MDAnalysisTests/coordinates/test_trz.py: 1 warning 751s testsuite/MDAnalysisTests/coordinates/test_writer_api.py: 4 warnings 751s testsuite/MDAnalysisTests/core/test_atomgroup.py: 15 warnings 751s testsuite/MDAnalysisTests/transformations/test_nojump.py: 1 warning 751s testsuite/MDAnalysisTests/utils/test_modelling.py: 2 warnings 751s /usr/lib/python3/dist-packages/MDAnalysis/coordinates/PDB.py:1153: UserWarning: Found no information for attr: 'chainIDs' Using default value of '' 751s warnings.warn("Found no information for attr: '{}'" 751s 751s testsuite/MDAnalysisTests/coordinates/test_netcdf.py: 2 warnings 751s testsuite/MDAnalysisTests/coordinates/test_pdb.py: 28 warnings 751s testsuite/MDAnalysisTests/coordinates/test_trz.py: 1 warning 751s testsuite/MDAnalysisTests/coordinates/test_writer_api.py: 4 warnings 751s testsuite/MDAnalysisTests/core/test_atomgroup.py: 15 warnings 751s testsuite/MDAnalysisTests/transformations/test_nojump.py: 1 warning 751s testsuite/MDAnalysisTests/utils/test_modelling.py: 2 warnings 751s /usr/lib/python3/dist-packages/MDAnalysis/coordinates/PDB.py:1200: UserWarning: Found missing chainIDs. Corresponding atoms will use value of 'X' 751s warnings.warn("Found missing chainIDs." 751s 751s testsuite/MDAnalysisTests/coordinates/test_netcdf.py::TestNCDFWriterUnits::test_writer_units[coordinates-angstrom] 751s testsuite/MDAnalysisTests/coordinates/test_netcdf.py::TestNCDFWriterUnits::test_writer_units[time-picosecond] 751s testsuite/MDAnalysisTests/coordinates/test_netcdf.py::TestNCDFWriterUnits::test_writer_units[cell_lengths-angstrom] 751s testsuite/MDAnalysisTests/coordinates/test_netcdf.py::TestNCDFWriterUnits::test_writer_units[cell_angles-degree] 751s testsuite/MDAnalysisTests/coordinates/test_netcdf.py::TestNCDFWriterUnits::test_writer_units[velocities-angstrom/picosecond] 751s testsuite/MDAnalysisTests/coordinates/test_netcdf.py::TestNCDFWriterUnits::test_writer_units[forces-kilocalorie/mole/angstrom] 751s /usr/lib/python3/dist-packages/MDAnalysis/coordinates/TRJ.py:1134: UserWarning: Reader has no dt information, set to 1.0 ps 751s time = ts.time 751s 751s testsuite/MDAnalysisTests/coordinates/test_netcdf.py::TestNCDFWriterErrorsWarnings::test_zero_atoms_VE 751s /usr/lib/python3/dist-packages/_pytest/unraisableexception.py:85: PytestUnraisableExceptionWarning: Exception ignored in: 751s 751s Traceback (most recent call last): 751s File "/usr/lib/python3/dist-packages/MDAnalysis/coordinates/base.py", line 1612, in __del__ 751s self.close() 751s File "/usr/lib/python3/dist-packages/MDAnalysis/coordinates/TRJ.py", line 1184, in close 751s if self.trjfile is not None: 751s ^^^^^^^^^^^^ 751s AttributeError: 'NCDFWriter' object has no attribute 'trjfile' 751s 751s warnings.warn(pytest.PytestUnraisableExceptionWarning(msg)) 751s 751s testsuite/MDAnalysisTests/coordinates/test_pdb.py::TestPDBReader::test_pickle_singleframe_reader 751s testsuite/MDAnalysisTests/coordinates/test_pdb.py::TestExtendedPDBReader::test_pickle_singleframe_reader 751s testsuite/MDAnalysisTests/coordinates/test_pdb.py::TestPSF_CRDReader::test_pickle_singleframe_reader 751s testsuite/MDAnalysisTests/coordinates/test_pdb.py::TestPSF_PDBReader::test_pickle_singleframe_reader 751s testsuite/MDAnalysisTests/coordinates/test_pqr.py::TestPQRReader::test_pickle_singleframe_reader 751s /tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/coordinates/base.py:124: UserWarning: Reader has no dt information, set to 1.0 ps 751s reader_p = pickle.loads(pickle.dumps(reader)) 751s 751s testsuite/MDAnalysisTests/coordinates/test_pdb.py::TestPDBWriter::test_writer_no_resnames 751s testsuite/MDAnalysisTests/coordinates/test_writer_api.py::test_write_with_atomgroup[MultiPDBWriter] 751s testsuite/MDAnalysisTests/coordinates/test_writer_api.py::test_write_with_atomgroup[PDBWriter] 751s testsuite/MDAnalysisTests/coordinates/test_writer_api.py::test_write_with_universe[MultiPDBWriter] 751s testsuite/MDAnalysisTests/coordinates/test_writer_api.py::test_write_with_universe[PDBWriter] 751s testsuite/MDAnalysisTests/transformations/test_nojump.py::test_nojump_iterate_twice 751s /usr/lib/python3/dist-packages/MDAnalysis/coordinates/PDB.py:1153: UserWarning: Found no information for attr: 'resnames' Using default value of 'UNK' 751s warnings.warn("Found no information for attr: '{}'" 751s 751s testsuite/MDAnalysisTests/coordinates/test_pdb.py: 8 warnings 751s testsuite/MDAnalysisTests/coordinates/test_writer_api.py: 4 warnings 751s testsuite/MDAnalysisTests/transformations/test_nojump.py: 1 warning 751s /usr/lib/python3/dist-packages/MDAnalysis/coordinates/PDB.py:1153: UserWarning: Found no information for attr: 'segids' Using default value of ' ' 751s warnings.warn("Found no information for attr: '{}'" 751s 751s testsuite/MDAnalysisTests/coordinates/test_pdb.py::TestPDBWriter::test_writer_no_resids 751s testsuite/MDAnalysisTests/coordinates/test_writer_api.py::test_write_with_atomgroup[MultiPDBWriter] 751s testsuite/MDAnalysisTests/coordinates/test_writer_api.py::test_write_with_atomgroup[PDBWriter] 751s testsuite/MDAnalysisTests/coordinates/test_writer_api.py::test_write_with_universe[MultiPDBWriter] 751s testsuite/MDAnalysisTests/coordinates/test_writer_api.py::test_write_with_universe[PDBWriter] 751s testsuite/MDAnalysisTests/transformations/test_nojump.py::test_nojump_iterate_twice 751s /usr/lib/python3/dist-packages/MDAnalysis/coordinates/PDB.py:1153: UserWarning: Found no information for attr: 'resids' Using default value of '1' 751s warnings.warn("Found no information for attr: '{}'" 751s 751s testsuite/MDAnalysisTests/coordinates/test_pdb.py: 6 warnings 751s testsuite/MDAnalysisTests/coordinates/test_writer_api.py: 4 warnings 751s testsuite/MDAnalysisTests/transformations/test_nojump.py: 1 warning 751s /usr/lib/python3/dist-packages/MDAnalysis/coordinates/PDB.py:1153: UserWarning: Found no information for attr: 'names' Using default value of 'X' 751s warnings.warn("Found no information for attr: '{}'" 751s 751s testsuite/MDAnalysisTests/coordinates/test_pdb.py::TestPDBWriter::test_chainid_validated[@] 751s /usr/lib/python3/dist-packages/MDAnalysis/coordinates/PDB.py:1196: UserWarning: Found chainIDs using unnaccepted character. Corresponding atoms will use value of 'X' 751s warnings.warn("Found chainIDs using unnaccepted character." 751s 751s testsuite/MDAnalysisTests/coordinates/test_pdb.py::TestPDBWriter::test_chainid_validated[AA] 751s /usr/lib/python3/dist-packages/MDAnalysis/coordinates/PDB.py:1192: UserWarning: Found chainIDs with invalid length. Corresponding atoms will use value of 'X' 751s warnings.warn("Found chainIDs with invalid length." 751s 751s testsuite/MDAnalysisTests/coordinates/test_pdb.py::TestPDBXLSerial::test_load 751s /usr/lib/python3/dist-packages/MDAnalysis/topology/PDBParser.py:304: UserWarning: Serial numbers went over 100,000. Higher serials have been guessed 751s warnings.warn("Serial numbers went over 100,000. " 751s 751s testsuite/MDAnalysisTests/coordinates/test_pdb.py::TestPDBXLSerial::test_load 751s /usr/lib/python3/dist-packages/MDAnalysis/topology/PDBParser.py:423: UserWarning: Invalid atom serials were present, bonds will not be parsed 751s warnings.warn("Invalid atom serials were present, bonds will not" 751s 751s testsuite/MDAnalysisTests/coordinates/test_pdb.py::TestPDBXLSerial::test_load 751s /usr/lib/python3/dist-packages/MDAnalysis/topology/PDBParser.py:215: UserWarning: Invalid atom serials were present, bonds will not be parsed 751s warnings.warn("Invalid atom serials were present, " 751s 751s testsuite/MDAnalysisTests/coordinates/test_pdb.py::TestWriterAlignments::test_atomname_alignment 751s testsuite/MDAnalysisTests/topology/test_pdb.py::test_wrong_elements_warnings 751s /usr/lib/python3/dist-packages/MDAnalysis/topology/PDBParser.py:348: UserWarning: Unknown element found for some atoms. These have been given an empty element record. If needed they can be guessed using MDAnalysis.topology.guessers. 751s warnings.warn(wmsg) 751s 751s testsuite/MDAnalysisTests/coordinates/test_pdbqt.py: 12 warnings 751s testsuite/MDAnalysisTests/topology/test_pdbqt.py: 9 warnings 751s testsuite/MDAnalysisTests/topology/test_topology_str_types.py: 5 warnings 751s testsuite/MDAnalysisTests/utils/test_streamio.py: 1 warning 751s /usr/lib/python3/dist-packages/MDAnalysis/topology/guessers.py:146: UserWarning: Failed to guess the mass for the following atom types: HD 751s warnings.warn("Failed to guess the mass for the following atom types: {}".format(atom_type)) 751s 751s testsuite/MDAnalysisTests/coordinates/test_pdbqt.py: 12 warnings 751s testsuite/MDAnalysisTests/topology/test_pdbqt.py: 9 warnings 751s testsuite/MDAnalysisTests/topology/test_topology_str_types.py: 5 warnings 751s testsuite/MDAnalysisTests/utils/test_streamio.py: 1 warning 751s /usr/lib/python3/dist-packages/MDAnalysis/topology/guessers.py:146: UserWarning: Failed to guess the mass for the following atom types: OA 751s warnings.warn("Failed to guess the mass for the following atom types: {}".format(atom_type)) 751s 751s testsuite/MDAnalysisTests/coordinates/test_pdbqt.py::TestPDBQTWriter::test_write_no_charges 751s testsuite/MDAnalysisTests/coordinates/test_pdbqt.py::TestPDBQTWriter::test_write_no_chainids_with_segids 751s /usr/lib/python3/dist-packages/MDAnalysis/topology/guessers.py:146: UserWarning: Failed to guess the mass for the following atom types: Ty 751s warnings.warn("Failed to guess the mass for the following atom types: {}".format(atom_type)) 751s 751s testsuite/MDAnalysisTests/coordinates/test_pdbqt.py::TestPDBQTWriter::test_write_no_chainids_with_segids 751s /usr/lib/python3/dist-packages/MDAnalysis/coordinates/PDBQT.py:296: UserWarning: Supplied AtomGroup was missing the following attributes: altLocs, charges, icodes, occupancies, tempfactors. These will be written with default values. 751s warnings.warn( 751s 751s testsuite/MDAnalysisTests/coordinates/test_tng.py::test_pytng_not_present_raises 751s /usr/lib/python3/dist-packages/_pytest/unraisableexception.py:85: PytestUnraisableExceptionWarning: Exception ignored in: 751s 751s Traceback (most recent call last): 751s File "/usr/lib/python3/dist-packages/MDAnalysis/coordinates/base.py", line 1530, in __del__ 751s for aux in self.aux_list: 751s ^^^^^^^^^^^^^ 751s File "/usr/lib/python3/dist-packages/MDAnalysis/coordinates/base.py", line 1170, in aux_list 751s return self._auxs.keys() 751s ^^^^^^^^^^ 751s AttributeError: 'TNGReader' object has no attribute '_auxs' 751s 751s warnings.warn(pytest.PytestUnraisableExceptionWarning(msg)) 751s 751s testsuite/MDAnalysisTests/coordinates/test_trc.py::TestTRCReaderTriclinicBox::test_trc_n_atoms 751s testsuite/MDAnalysisTests/coordinates/test_trc.py::TestTRCReaderTruncOctBox::test_universe 751s testsuite/MDAnalysisTests/coordinates/test_trc.py::TestTRCGenboxOrigin::test_universe 751s testsuite/MDAnalysisTests/coordinates/test_trc.py::TestTRCGenboxEuler::test_universe 751s /usr/lib/python3/dist-packages/MDAnalysis/coordinates/TRC.py:265: UserWarning: The trajectory does not contain TIMESTEP blocks! 751s warnings.warn( 751s 751s testsuite/MDAnalysisTests/coordinates/test_trj.py::test_trj_no_natoms 751s /usr/lib/python3/dist-packages/_pytest/unraisableexception.py:85: PytestUnraisableExceptionWarning: Exception ignored in: 751s 751s Traceback (most recent call last): 751s File "/usr/lib/python3/dist-packages/MDAnalysis/coordinates/base.py", line 1532, in __del__ 751s self.close() 751s File "/usr/lib/python3/dist-packages/MDAnalysis/coordinates/TRJ.py", line 352, in close 751s if self.trjfile is None: 751s ^^^^^^^^^^^^ 751s AttributeError: 'TRJReader' object has no attribute 'trjfile' 751s 751s warnings.warn(pytest.PytestUnraisableExceptionWarning(msg)) 751s 751s testsuite/MDAnalysisTests/coordinates/test_trz.py::test_deprecated_trz_writer 751s testsuite/MDAnalysisTests/coordinates/test_trz.py::TestTRZWriter2::test_writer_trz_from_other 751s testsuite/MDAnalysisTests/coordinates/test_trz.py::TestTRZWriter2::test_no_dt_warning 751s /usr/lib/python3/dist-packages/MDAnalysis/coordinates/TRZ.py:546: UserWarning: Reader has no dt information, set to 1.0 ps 751s data['time'] = ts.time 751s 751s testsuite/MDAnalysisTests/coordinates/test_trz.py::test_deprecated_trz_writer 751s testsuite/MDAnalysisTests/coordinates/test_trz.py::TestTRZReader::test_read_zero_box 751s testsuite/MDAnalysisTests/coordinates/test_trz.py::TestTRZWriter::test_no_box_warning 751s testsuite/MDAnalysisTests/coordinates/test_trz.py::TestTRZWriter2::test_writer_trz_from_other 751s testsuite/MDAnalysisTests/coordinates/test_trz.py::TestTRZWriter2::test_no_dt_warning 751s testsuite/MDAnalysisTests/coordinates/test_writer_api.py::test_write_with_atomgroup[TRZWriter] 751s testsuite/MDAnalysisTests/coordinates/test_writer_api.py::test_write_with_universe[TRZWriter] 751s /usr/lib/python3/dist-packages/MDAnalysis/coordinates/TRZ.py:551: UserWarning: Timestep didn't have the following attributes: 'pressure, pressure_tensor, total_energy, potential_energy, kinetic_energy, temperature, step', these will be set to 0 in the output trajectory 751s warnings.warn("Timestep didn't have the following attributes: '{0}', " 751s 751s testsuite/MDAnalysisTests/coordinates/test_trz.py::test_deprecated_trz_writer 751s testsuite/MDAnalysisTests/coordinates/test_trz.py::TestTRZReader::test_read_zero_box 751s testsuite/MDAnalysisTests/coordinates/test_trz.py::TestTRZWriter::test_no_box_warning 751s testsuite/MDAnalysisTests/coordinates/test_trz.py::TestTRZWriter2::test_writer_trz_from_other 751s testsuite/MDAnalysisTests/coordinates/test_trz.py::TestTRZWriter2::test_no_dt_warning 751s testsuite/MDAnalysisTests/coordinates/test_writer_api.py::test_write_with_atomgroup[TRZWriter] 751s testsuite/MDAnalysisTests/coordinates/test_writer_api.py::test_write_with_universe[TRZWriter] 751s /usr/lib/python3/dist-packages/MDAnalysis/coordinates/TRZ.py:567: UserWarning: Timestep didn't have velocity information, this will be set to zero in output trajectory. 751s warnings.warn("Timestep didn't have velocity information, " 751s 751s testsuite/MDAnalysisTests/coordinates/test_trz.py::TestTRZReader::test_read_zero_box 751s testsuite/MDAnalysisTests/coordinates/test_writer_api.py::test_write_with_atomgroup[TRZWriter] 751s testsuite/MDAnalysisTests/coordinates/test_writer_api.py::test_write_with_universe[TRZWriter] 751s /usr/lib/python3/dist-packages/MDAnalysis/coordinates/TRZ.py:559: UserWarning: Timestep didn't have dimensions information, box will be written as all zero values 751s warnings.warn("Timestep didn't have dimensions information, " 751s 751s testsuite/MDAnalysisTests/coordinates/test_trz.py::TestTRZWriter::test_long_title 751s /usr/lib/python3/dist-packages/_pytest/unraisableexception.py:85: PytestUnraisableExceptionWarning: Exception ignored in: 751s 751s Traceback (most recent call last): 751s File "/usr/lib/python3/dist-packages/MDAnalysis/coordinates/base.py", line 1612, in __del__ 751s self.close() 751s File "/usr/lib/python3/dist-packages/MDAnalysis/coordinates/TRZ.py", line 605, in close 751s if self.trzfile is None: 751s ^^^^^^^^^^^^ 751s AttributeError: 'TRZWriter' object has no attribute 'trzfile' 751s 751s warnings.warn(pytest.PytestUnraisableExceptionWarning(msg)) 751s 751s testsuite/MDAnalysisTests/coordinates/test_txyz.py::test_arcpbc_traj_length 751s testsuite/MDAnalysisTests/coordinates/test_txyz.py::test_pbc_boxsize 751s testsuite/MDAnalysisTests/topology/test_txyz.py::test_missing_elements_noattribute 751s /usr/lib/python3/dist-packages/MDAnalysis/topology/guessers.py:146: UserWarning: Failed to guess the mass for the following atom types: CH2 751s warnings.warn("Failed to guess the mass for the following atom types: {}".format(atom_type)) 751s 751s testsuite/MDAnalysisTests/coordinates/test_txyz.py::test_arcpbc_traj_length 751s testsuite/MDAnalysisTests/coordinates/test_txyz.py::test_pbc_boxsize 751s testsuite/MDAnalysisTests/topology/test_txyz.py::test_missing_elements_noattribute 751s /usr/lib/python3/dist-packages/MDAnalysis/topology/guessers.py:146: UserWarning: Failed to guess the mass for the following atom types: CH3 751s warnings.warn("Failed to guess the mass for the following atom types: {}".format(atom_type)) 751s 751s testsuite/MDAnalysisTests/coordinates/test_txyz.py::test_arcpbc_traj_length 751s testsuite/MDAnalysisTests/coordinates/test_txyz.py::test_pbc_boxsize 751s /usr/lib/python3/dist-packages/MDAnalysis/topology/TXYZParser.py:139: UserWarning: Element information is missing, elements attribute will not be populated. If needed these can be guessed using MDAnalysis.topology.guessers. 751s warnings.warn("Element information is missing, elements attribute " 751s 751s testsuite/MDAnalysisTests/coordinates/test_writer_api.py::test_ts_error[TRZWriter] 751s testsuite/MDAnalysisTests/coordinates/test_writer_api.py::test_write_with_atomgroup[TRZWriter] 751s testsuite/MDAnalysisTests/coordinates/test_writer_api.py::test_write_with_universe[TRZWriter] 751s /usr/lib/python3/dist-packages/MDAnalysis/coordinates/TRZ.py:428: DeprecationWarning: The TRZ writer is deprecated and will be removed in MDAnalysis version 3.0.0 751s warnings.warn(wmsg, DeprecationWarning) 751s 751s testsuite/MDAnalysisTests/coordinates/test_writer_api.py::test_write_with_atomgroup[CRDWriter] 751s testsuite/MDAnalysisTests/coordinates/test_writer_api.py::test_write_with_universe[CRDWriter] 751s /usr/lib/python3/dist-packages/MDAnalysis/coordinates/CRD.py:248: UserWarning: Supplied AtomGroup was missing the following attributes: resnames, resids, names, tempfactors, tempfactors. These will be written with default values. 751s warnings.warn( 751s 751s testsuite/MDAnalysisTests/coordinates/test_writer_api.py::test_write_with_atomgroup[GROWriter] 751s testsuite/MDAnalysisTests/coordinates/test_writer_api.py::test_write_with_universe[GROWriter] 751s /usr/lib/python3/dist-packages/MDAnalysis/coordinates/GRO.py:421: UserWarning: Supplied AtomGroup was missing the following attributes: names, resnames, resids. These will be written with default values. Alternatively these can be supplied as keyword arguments. 751s warnings.warn( 751s 751s testsuite/MDAnalysisTests/coordinates/test_writer_api.py::test_write_with_atomgroup[PDBQTWriter] 751s testsuite/MDAnalysisTests/coordinates/test_writer_api.py::test_write_with_universe[PDBQTWriter] 751s /usr/lib/python3/dist-packages/MDAnalysis/coordinates/PDBQT.py:296: UserWarning: Supplied AtomGroup was missing the following attributes: altLocs, charges, icodes, names, occupancies, resids, resnames, tempfactors, types, chainids. These will be written with default values. 751s warnings.warn( 751s 751s testsuite/MDAnalysisTests/coordinates/test_writer_api.py::test_write_with_atomgroup[PQRWriter] 751s testsuite/MDAnalysisTests/coordinates/test_writer_api.py::test_write_with_universe[PQRWriter] 751s /usr/lib/python3/dist-packages/MDAnalysis/coordinates/PQR.py:301: UserWarning: Supplied AtomGroup was missing the following attributes: names, resnames, resids, charges, radii. These will be written with default values. 751s warnings.warn( 751s 751s testsuite/MDAnalysisTests/coordinates/test_writer_api.py::test_write_with_atomgroup[XYZWriter] 751s testsuite/MDAnalysisTests/coordinates/test_writer_api.py::test_write_with_universe[XYZWriter] 751s /usr/lib/python3/dist-packages/MDAnalysis/coordinates/XYZ.py:193: UserWarning: Input AtomGroup or Universe does not have atom elements or names attributes, writer will default atom names to 'X' 751s warnings.warn(wmsg) 751s 751s testsuite/MDAnalysisTests/coordinates/test_xdr.py::TestXTCWriterSingleFrame::test_single_frame_GRO 751s testsuite/MDAnalysisTests/coordinates/test_xdr.py::TestXTCWriterSingleFrame::test_single_frame_PDB 751s testsuite/MDAnalysisTests/coordinates/test_xdr.py::TestXTCWriterSingleFrame::test_single_frame_CRD 751s testsuite/MDAnalysisTests/visualization/test_streamlines.py::test_streamplot_2D 751s /usr/lib/python3/dist-packages/MDAnalysis/coordinates/XTC.py:105: UserWarning: Reader has no dt information, set to 1.0 ps 751s time = ts.time 751s 751s testsuite/MDAnalysisTests/coordinates/test_xdr.py::TestTRRWriterSingleFrame::test_single_frame_GRO 751s testsuite/MDAnalysisTests/coordinates/test_xdr.py::TestTRRWriterSingleFrame::test_single_frame_PDB 751s testsuite/MDAnalysisTests/coordinates/test_xdr.py::TestTRRWriterSingleFrame::test_single_frame_CRD 751s /usr/lib/python3/dist-packages/MDAnalysis/coordinates/TRR.py:116: UserWarning: Reader has no dt information, set to 1.0 ps 751s time = ts.time 751s 751s testsuite/MDAnalysisTests/coordinates/test_xdr.py::TestXTCWriter_2::test_no_container 751s /usr/lib/python3/dist-packages/_pytest/unraisableexception.py:85: PytestUnraisableExceptionWarning: Exception ignored in: 751s 751s Traceback (most recent call last): 751s File "/usr/lib/python3/dist-packages/MDAnalysis/coordinates/XDR.py", line 324, in __del__ 751s self.close() 751s File "/usr/lib/python3/dist-packages/MDAnalysis/coordinates/XDR.py", line 321, in close 751s self._xdr.close() 751s ^^^^^^^^^ 751s AttributeError: 'XTCWriter' object has no attribute '_xdr' 751s 751s warnings.warn(pytest.PytestUnraisableExceptionWarning(msg)) 751s 751s testsuite/MDAnalysisTests/coordinates/test_xdr.py::TestTRRWriter_2::test_no_container 751s /usr/lib/python3/dist-packages/_pytest/unraisableexception.py:85: PytestUnraisableExceptionWarning: Exception ignored in: 751s 751s Traceback (most recent call last): 751s File "/usr/lib/python3/dist-packages/MDAnalysis/coordinates/XDR.py", line 324, in __del__ 751s self.close() 751s File "/usr/lib/python3/dist-packages/MDAnalysis/coordinates/XDR.py", line 321, in close 751s self._xdr.close() 751s ^^^^^^^^^ 751s AttributeError: 'TRRWriter' object has no attribute '_xdr' 751s 751s warnings.warn(pytest.PytestUnraisableExceptionWarning(msg)) 751s 751s testsuite/MDAnalysisTests/coordinates/test_xdr.py::TestXTCReader_offsets::test_reload_offsets_if_offsets_readin_io_fails 751s testsuite/MDAnalysisTests/coordinates/test_xdr.py::TestXTCReader_offsets::test_reload_offsets_if_offsets_readin_value_fails 751s /usr/lib/python3/dist-packages/MDAnalysis/coordinates/XDR.py:222: UserWarning: Reading offsets from /tmp/pytest-of-ubuntu/pytest-0/xtc0/.adk_oplsaa.xtc_offsets.npz failed, reading offsets from trajectory instead. 751s Consider setting 'refresh_offsets=True' when loading your Universe. 751s warnings.warn(f"Reading offsets from {fname} failed, " 751s 751s testsuite/MDAnalysisTests/coordinates/test_xdr.py::TestXTCReader_offsets::test_persistent_offsets_readonly 751s /usr/lib/python3/dist-packages/MDAnalysis/coordinates/XDR.py:202: UserWarning: Cannot write lock/offset file in same location as /tmp/pytest-of-ubuntu/pytest-0/test_persistent_offsets_readon0/adk_oplsaa.xtc. Using slow offset calculation. 751s warnings.warn(f"Cannot write lock/offset file in same location as " 751s 751s testsuite/MDAnalysisTests/coordinates/test_xdr.py::TestTRRReader_offsets::test_reload_offsets_if_offsets_readin_io_fails 751s testsuite/MDAnalysisTests/coordinates/test_xdr.py::TestTRRReader_offsets::test_reload_offsets_if_offsets_readin_value_fails 751s /usr/lib/python3/dist-packages/MDAnalysis/coordinates/XDR.py:222: UserWarning: Reading offsets from /tmp/pytest-of-ubuntu/pytest-0/xtc1/.adk_oplsaa.trr_offsets.npz failed, reading offsets from trajectory instead. 751s Consider setting 'refresh_offsets=True' when loading your Universe. 751s warnings.warn(f"Reading offsets from {fname} failed, " 751s 751s testsuite/MDAnalysisTests/coordinates/test_xdr.py::TestTRRReader_offsets::test_persistent_offsets_readonly 751s /usr/lib/python3/dist-packages/MDAnalysis/coordinates/XDR.py:202: UserWarning: Cannot write lock/offset file in same location as /tmp/pytest-of-ubuntu/pytest-0/test_persistent_offsets_readon0/adk_oplsaa.trr. Using slow offset calculation. 751s warnings.warn(f"Cannot write lock/offset file in same location as " 751s 751s testsuite/MDAnalysisTests/core/test_accumulate.py::TestAccumulate::test_accumulate_different_func[atoms] 751s testsuite/MDAnalysisTests/core/test_accumulate.py::TestAccumulate::test_accumulate_different_func[residues] 751s testsuite/MDAnalysisTests/core/test_accumulate.py::TestAccumulate::test_accumulate_different_func[segments] 751s /usr/lib/python3/dist-packages/numpy/core/fromnumeric.py:88: RuntimeWarning: overflow encountered in reduce 751s return ufunc.reduce(obj, axis, dtype, out, **passkwargs) 751s 751s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroupWriting::test_write_frame_none[-xyz] 751s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroupWriting::test_write_frame_none[.gz-xyz] 751s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroupWriting::test_write_frame_none[.bz2-xyz] 751s /usr/lib/python3/dist-packages/MDAnalysis/topology/guessers.py:146: UserWarning: Failed to guess the mass for the following atom types: CB 751s warnings.warn("Failed to guess the mass for the following atom types: {}".format(atom_type)) 751s 751s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroupWriting::test_write_frame_none[-xyz] 751s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroupWriting::test_write_frame_none[.gz-xyz] 751s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroupWriting::test_write_frame_none[.bz2-xyz] 751s /usr/lib/python3/dist-packages/MDAnalysis/topology/guessers.py:146: UserWarning: Failed to guess the mass for the following atom types: CD 751s warnings.warn("Failed to guess the mass for the following atom types: {}".format(atom_type)) 751s 751s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroupWriting::test_write_frame_none[-xyz] 751s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroupWriting::test_write_frame_none[.gz-xyz] 751s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroupWriting::test_write_frame_none[.bz2-xyz] 751s /usr/lib/python3/dist-packages/MDAnalysis/topology/guessers.py:146: UserWarning: Failed to guess the mass for the following atom types: CD1 751s warnings.warn("Failed to guess the mass for the following atom types: {}".format(atom_type)) 751s 751s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroupWriting::test_write_frame_none[-xyz] 751s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroupWriting::test_write_frame_none[.gz-xyz] 751s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroupWriting::test_write_frame_none[.bz2-xyz] 751s /usr/lib/python3/dist-packages/MDAnalysis/topology/guessers.py:146: UserWarning: Failed to guess the mass for the following atom types: CD2 751s warnings.warn("Failed to guess the mass for the following atom types: {}".format(atom_type)) 751s 751s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroupWriting::test_write_frame_none[-xyz] 751s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroupWriting::test_write_frame_none[.gz-xyz] 751s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroupWriting::test_write_frame_none[.bz2-xyz] 751s /usr/lib/python3/dist-packages/MDAnalysis/topology/guessers.py:146: UserWarning: Failed to guess the mass for the following atom types: CE 751s warnings.warn("Failed to guess the mass for the following atom types: {}".format(atom_type)) 751s 751s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroupWriting::test_write_frame_none[-xyz] 751s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroupWriting::test_write_frame_none[.gz-xyz] 751s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroupWriting::test_write_frame_none[.bz2-xyz] 751s /usr/lib/python3/dist-packages/MDAnalysis/topology/guessers.py:146: UserWarning: Failed to guess the mass for the following atom types: CE1 751s warnings.warn("Failed to guess the mass for the following atom types: {}".format(atom_type)) 751s 751s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroupWriting::test_write_frame_none[-xyz] 751s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroupWriting::test_write_frame_none[.gz-xyz] 751s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroupWriting::test_write_frame_none[.bz2-xyz] 751s /usr/lib/python3/dist-packages/MDAnalysis/topology/guessers.py:146: UserWarning: Failed to guess the mass for the following atom types: CE2 751s warnings.warn("Failed to guess the mass for the following atom types: {}".format(atom_type)) 751s 751s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroupWriting::test_write_frame_none[-xyz] 751s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroupWriting::test_write_frame_none[.gz-xyz] 751s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroupWriting::test_write_frame_none[.bz2-xyz] 751s /usr/lib/python3/dist-packages/MDAnalysis/topology/guessers.py:146: UserWarning: Failed to guess the mass for the following atom types: CG 751s warnings.warn("Failed to guess the mass for the following atom types: {}".format(atom_type)) 751s 751s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroupWriting::test_write_frame_none[-xyz] 751s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroupWriting::test_write_frame_none[.gz-xyz] 751s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroupWriting::test_write_frame_none[.bz2-xyz] 751s /usr/lib/python3/dist-packages/MDAnalysis/topology/guessers.py:146: UserWarning: Failed to guess the mass for the following atom types: CG1 751s warnings.warn("Failed to guess the mass for the following atom types: {}".format(atom_type)) 751s 751s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroupWriting::test_write_frame_none[-xyz] 751s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroupWriting::test_write_frame_none[.gz-xyz] 751s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroupWriting::test_write_frame_none[.bz2-xyz] 751s /usr/lib/python3/dist-packages/MDAnalysis/topology/guessers.py:146: UserWarning: Failed to guess the mass for the following atom types: CG2 751s warnings.warn("Failed to guess the mass for the following atom types: {}".format(atom_type)) 751s 751s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroupWriting::test_write_frame_none[-xyz] 751s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroupWriting::test_write_frame_none[.gz-xyz] 751s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroupWriting::test_write_frame_none[.bz2-xyz] 751s /usr/lib/python3/dist-packages/MDAnalysis/topology/guessers.py:146: UserWarning: Failed to guess the mass for the following atom types: CZ 751s warnings.warn("Failed to guess the mass for the following atom types: {}".format(atom_type)) 751s 751s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroupWriting::test_write_frame_none[-xyz] 751s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroupWriting::test_write_frame_none[.gz-xyz] 751s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroupWriting::test_write_frame_none[.bz2-xyz] 751s /usr/lib/python3/dist-packages/MDAnalysis/topology/guessers.py:146: UserWarning: Failed to guess the mass for the following atom types: HA 751s warnings.warn("Failed to guess the mass for the following atom types: {}".format(atom_type)) 751s 751s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroupWriting::test_write_frame_none[-xyz] 751s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroupWriting::test_write_frame_none[.gz-xyz] 751s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroupWriting::test_write_frame_none[.bz2-xyz] 751s /usr/lib/python3/dist-packages/MDAnalysis/topology/guessers.py:146: UserWarning: Failed to guess the mass for the following atom types: HA1 751s warnings.warn("Failed to guess the mass for the following atom types: {}".format(atom_type)) 751s 751s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroupWriting::test_write_frame_none[-xyz] 751s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroupWriting::test_write_frame_none[.gz-xyz] 751s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroupWriting::test_write_frame_none[.bz2-xyz] 751s /usr/lib/python3/dist-packages/MDAnalysis/topology/guessers.py:146: UserWarning: Failed to guess the mass for the following atom types: HA2 751s warnings.warn("Failed to guess the mass for the following atom types: {}".format(atom_type)) 751s 751s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroupWriting::test_write_frame_none[-xyz] 751s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroupWriting::test_write_frame_none[.gz-xyz] 751s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroupWriting::test_write_frame_none[.bz2-xyz] 751s /usr/lib/python3/dist-packages/MDAnalysis/topology/guessers.py:146: UserWarning: Failed to guess the mass for the following atom types: HB 751s warnings.warn("Failed to guess the mass for the following atom types: {}".format(atom_type)) 751s 751s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroupWriting::test_write_frame_none[-xyz] 751s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroupWriting::test_write_frame_none[.gz-xyz] 751s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroupWriting::test_write_frame_none[.bz2-xyz] 751s /usr/lib/python3/dist-packages/MDAnalysis/topology/guessers.py:146: UserWarning: Failed to guess the mass for the following atom types: HB1 751s warnings.warn("Failed to guess the mass for the following atom types: {}".format(atom_type)) 751s 751s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroupWriting::test_write_frame_none[-xyz] 751s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroupWriting::test_write_frame_none[.gz-xyz] 751s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroupWriting::test_write_frame_none[.bz2-xyz] 751s /usr/lib/python3/dist-packages/MDAnalysis/topology/guessers.py:146: UserWarning: Failed to guess the mass for the following atom types: HB2 751s warnings.warn("Failed to guess the mass for the following atom types: {}".format(atom_type)) 751s 751s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroupWriting::test_write_frame_none[-xyz] 751s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroupWriting::test_write_frame_none[.gz-xyz] 751s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroupWriting::test_write_frame_none[.bz2-xyz] 751s /usr/lib/python3/dist-packages/MDAnalysis/topology/guessers.py:146: UserWarning: Failed to guess the mass for the following atom types: HB3 751s warnings.warn("Failed to guess the mass for the following atom types: {}".format(atom_type)) 751s 751s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroupWriting::test_write_frame_none[-xyz] 751s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroupWriting::test_write_frame_none[.gz-xyz] 751s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroupWriting::test_write_frame_none[.bz2-xyz] 751s /usr/lib/python3/dist-packages/MDAnalysis/topology/guessers.py:146: UserWarning: Failed to guess the mass for the following atom types: HD1 751s warnings.warn("Failed to guess the mass for the following atom types: {}".format(atom_type)) 751s 751s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroupWriting::test_write_frame_none[-xyz] 751s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroupWriting::test_write_frame_none[.gz-xyz] 751s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroupWriting::test_write_frame_none[.bz2-xyz] 751s /usr/lib/python3/dist-packages/MDAnalysis/topology/guessers.py:146: UserWarning: Failed to guess the mass for the following atom types: HD11 751s warnings.warn("Failed to guess the mass for the following atom types: {}".format(atom_type)) 751s 751s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroupWriting::test_write_frame_none[-xyz] 751s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroupWriting::test_write_frame_none[.gz-xyz] 751s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroupWriting::test_write_frame_none[.bz2-xyz] 751s /usr/lib/python3/dist-packages/MDAnalysis/topology/guessers.py:146: UserWarning: Failed to guess the mass for the following atom types: HD12 751s warnings.warn("Failed to guess the mass for the following atom types: {}".format(atom_type)) 751s 751s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroupWriting::test_write_frame_none[-xyz] 751s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroupWriting::test_write_frame_none[.gz-xyz] 751s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroupWriting::test_write_frame_none[.bz2-xyz] 751s /usr/lib/python3/dist-packages/MDAnalysis/topology/guessers.py:146: UserWarning: Failed to guess the mass for the following atom types: HD13 751s warnings.warn("Failed to guess the mass for the following atom types: {}".format(atom_type)) 751s 751s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroupWriting::test_write_frame_none[-xyz] 751s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroupWriting::test_write_frame_none[.gz-xyz] 751s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroupWriting::test_write_frame_none[.bz2-xyz] 751s /usr/lib/python3/dist-packages/MDAnalysis/topology/guessers.py:146: UserWarning: Failed to guess the mass for the following atom types: HD2 751s warnings.warn("Failed to guess the mass for the following atom types: {}".format(atom_type)) 751s 751s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroupWriting::test_write_frame_none[-xyz] 751s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroupWriting::test_write_frame_none[.gz-xyz] 751s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroupWriting::test_write_frame_none[.bz2-xyz] 751s /usr/lib/python3/dist-packages/MDAnalysis/topology/guessers.py:146: UserWarning: Failed to guess the mass for the following atom types: HD21 751s warnings.warn("Failed to guess the mass for the following atom types: {}".format(atom_type)) 751s 751s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroupWriting::test_write_frame_none[-xyz] 751s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroupWriting::test_write_frame_none[.gz-xyz] 751s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroupWriting::test_write_frame_none[.bz2-xyz] 751s /usr/lib/python3/dist-packages/MDAnalysis/topology/guessers.py:146: UserWarning: Failed to guess the mass for the following atom types: HD22 751s warnings.warn("Failed to guess the mass for the following atom types: {}".format(atom_type)) 751s 751s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroupWriting::test_write_frame_none[-xyz] 751s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroupWriting::test_write_frame_none[.gz-xyz] 751s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroupWriting::test_write_frame_none[.bz2-xyz] 751s /usr/lib/python3/dist-packages/MDAnalysis/topology/guessers.py:146: UserWarning: Failed to guess the mass for the following atom types: HD23 751s warnings.warn("Failed to guess the mass for the following atom types: {}".format(atom_type)) 751s 751s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroupWriting::test_write_frame_none[-xyz] 751s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroupWriting::test_write_frame_none[.gz-xyz] 751s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroupWriting::test_write_frame_none[.bz2-xyz] 751s /usr/lib/python3/dist-packages/MDAnalysis/topology/guessers.py:146: UserWarning: Failed to guess the mass for the following atom types: HD3 751s warnings.warn("Failed to guess the mass for the following atom types: {}".format(atom_type)) 751s 751s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroupWriting::test_write_frame_none[-xyz] 751s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroupWriting::test_write_frame_none[.gz-xyz] 751s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroupWriting::test_write_frame_none[.bz2-xyz] 751s /usr/lib/python3/dist-packages/MDAnalysis/topology/guessers.py:146: UserWarning: Failed to guess the mass for the following atom types: HE1 751s warnings.warn("Failed to guess the mass for the following atom types: {}".format(atom_type)) 751s 751s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroupWriting::test_write_frame_none[-xyz] 751s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroupWriting::test_write_frame_none[.gz-xyz] 751s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroupWriting::test_write_frame_none[.bz2-xyz] 751s /usr/lib/python3/dist-packages/MDAnalysis/topology/guessers.py:146: UserWarning: Failed to guess the mass for the following atom types: HE2 751s warnings.warn("Failed to guess the mass for the following atom types: {}".format(atom_type)) 751s 751s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroupWriting::test_write_frame_none[-xyz] 751s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroupWriting::test_write_frame_none[.gz-xyz] 751s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroupWriting::test_write_frame_none[.bz2-xyz] 751s /usr/lib/python3/dist-packages/MDAnalysis/topology/guessers.py:146: UserWarning: Failed to guess the mass for the following atom types: HE21 751s warnings.warn("Failed to guess the mass for the following atom types: {}".format(atom_type)) 751s 751s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroupWriting::test_write_frame_none[-xyz] 751s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroupWriting::test_write_frame_none[.gz-xyz] 751s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroupWriting::test_write_frame_none[.bz2-xyz] 751s /usr/lib/python3/dist-packages/MDAnalysis/topology/guessers.py:146: UserWarning: Failed to guess the mass for the following atom types: HE22 751s warnings.warn("Failed to guess the mass for the following atom types: {}".format(atom_type)) 751s 751s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroupWriting::test_write_frame_none[-xyz] 751s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroupWriting::test_write_frame_none[.gz-xyz] 751s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroupWriting::test_write_frame_none[.bz2-xyz] 751s /usr/lib/python3/dist-packages/MDAnalysis/topology/guessers.py:146: UserWarning: Failed to guess the mass for the following atom types: HE3 751s warnings.warn("Failed to guess the mass for the following atom types: {}".format(atom_type)) 751s 751s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroupWriting::test_write_frame_none[-xyz] 751s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroupWriting::test_write_frame_none[.gz-xyz] 751s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroupWriting::test_write_frame_none[.bz2-xyz] 751s /usr/lib/python3/dist-packages/MDAnalysis/topology/guessers.py:146: UserWarning: Failed to guess the mass for the following atom types: HG 751s warnings.warn("Failed to guess the mass for the following atom types: {}".format(atom_type)) 751s 751s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroupWriting::test_write_frame_none[-xyz] 751s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroupWriting::test_write_frame_none[.gz-xyz] 751s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroupWriting::test_write_frame_none[.bz2-xyz] 751s /usr/lib/python3/dist-packages/MDAnalysis/topology/guessers.py:146: UserWarning: Failed to guess the mass for the following atom types: HG1 751s warnings.warn("Failed to guess the mass for the following atom types: {}".format(atom_type)) 751s 751s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroupWriting::test_write_frame_none[-xyz] 751s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroupWriting::test_write_frame_none[.gz-xyz] 751s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroupWriting::test_write_frame_none[.bz2-xyz] 751s /usr/lib/python3/dist-packages/MDAnalysis/topology/guessers.py:146: UserWarning: Failed to guess the mass for the following atom types: HG11 751s warnings.warn("Failed to guess the mass for the following atom types: {}".format(atom_type)) 751s 751s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroupWriting::test_write_frame_none[-xyz] 751s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroupWriting::test_write_frame_none[.gz-xyz] 751s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroupWriting::test_write_frame_none[.bz2-xyz] 751s /usr/lib/python3/dist-packages/MDAnalysis/topology/guessers.py:146: UserWarning: Failed to guess the mass for the following atom types: HG12 751s warnings.warn("Failed to guess the mass for the following atom types: {}".format(atom_type)) 751s 751s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroupWriting::test_write_frame_none[-xyz] 751s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroupWriting::test_write_frame_none[.gz-xyz] 751s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroupWriting::test_write_frame_none[.bz2-xyz] 751s /usr/lib/python3/dist-packages/MDAnalysis/topology/guessers.py:146: UserWarning: Failed to guess the mass for the following atom types: HG13 751s warnings.warn("Failed to guess the mass for the following atom types: {}".format(atom_type)) 751s 751s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroupWriting::test_write_frame_none[-xyz] 751s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroupWriting::test_write_frame_none[.gz-xyz] 751s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroupWriting::test_write_frame_none[.bz2-xyz] 751s /usr/lib/python3/dist-packages/MDAnalysis/topology/guessers.py:146: UserWarning: Failed to guess the mass for the following atom types: HG2 751s warnings.warn("Failed to guess the mass for the following atom types: {}".format(atom_type)) 751s 751s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroupWriting::test_write_frame_none[-xyz] 751s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroupWriting::test_write_frame_none[.gz-xyz] 751s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroupWriting::test_write_frame_none[.bz2-xyz] 751s /usr/lib/python3/dist-packages/MDAnalysis/topology/guessers.py:146: UserWarning: Failed to guess the mass for the following atom types: HG21 751s warnings.warn("Failed to guess the mass for the following atom types: {}".format(atom_type)) 751s 751s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroupWriting::test_write_frame_none[-xyz] 751s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroupWriting::test_write_frame_none[.gz-xyz] 751s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroupWriting::test_write_frame_none[.bz2-xyz] 751s /usr/lib/python3/dist-packages/MDAnalysis/topology/guessers.py:146: UserWarning: Failed to guess the mass for the following atom types: HG22 751s warnings.warn("Failed to guess the mass for the following atom types: {}".format(atom_type)) 751s 751s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroupWriting::test_write_frame_none[-xyz] 751s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroupWriting::test_write_frame_none[.gz-xyz] 751s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroupWriting::test_write_frame_none[.bz2-xyz] 751s /usr/lib/python3/dist-packages/MDAnalysis/topology/guessers.py:146: UserWarning: Failed to guess the mass for the following atom types: HG23 751s warnings.warn("Failed to guess the mass for the following atom types: {}".format(atom_type)) 751s 751s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroupWriting::test_write_frame_none[-xyz] 751s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroupWriting::test_write_frame_none[.gz-xyz] 751s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroupWriting::test_write_frame_none[.bz2-xyz] 751s /usr/lib/python3/dist-packages/MDAnalysis/topology/guessers.py:146: UserWarning: Failed to guess the mass for the following atom types: HH 751s warnings.warn("Failed to guess the mass for the following atom types: {}".format(atom_type)) 751s 751s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroupWriting::test_write_frame_none[-xyz] 751s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroupWriting::test_write_frame_none[.gz-xyz] 751s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroupWriting::test_write_frame_none[.bz2-xyz] 751s /usr/lib/python3/dist-packages/MDAnalysis/topology/guessers.py:146: UserWarning: Failed to guess the mass for the following atom types: HH11 751s warnings.warn("Failed to guess the mass for the following atom types: {}".format(atom_type)) 751s 751s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroupWriting::test_write_frame_none[-xyz] 751s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroupWriting::test_write_frame_none[.gz-xyz] 751s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroupWriting::test_write_frame_none[.bz2-xyz] 751s /usr/lib/python3/dist-packages/MDAnalysis/topology/guessers.py:146: UserWarning: Failed to guess the mass for the following atom types: HH12 751s warnings.warn("Failed to guess the mass for the following atom types: {}".format(atom_type)) 751s 751s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroupWriting::test_write_frame_none[-xyz] 751s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroupWriting::test_write_frame_none[.gz-xyz] 751s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroupWriting::test_write_frame_none[.bz2-xyz] 751s /usr/lib/python3/dist-packages/MDAnalysis/topology/guessers.py:146: UserWarning: Failed to guess the mass for the following atom types: HH21 751s warnings.warn("Failed to guess the mass for the following atom types: {}".format(atom_type)) 751s 751s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroupWriting::test_write_frame_none[-xyz] 751s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroupWriting::test_write_frame_none[.gz-xyz] 751s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroupWriting::test_write_frame_none[.bz2-xyz] 751s /usr/lib/python3/dist-packages/MDAnalysis/topology/guessers.py:146: UserWarning: Failed to guess the mass for the following atom types: HH22 751s warnings.warn("Failed to guess the mass for the following atom types: {}".format(atom_type)) 751s 751s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroupWriting::test_write_frame_none[-xyz] 751s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroupWriting::test_write_frame_none[.gz-xyz] 751s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroupWriting::test_write_frame_none[.bz2-xyz] 751s /usr/lib/python3/dist-packages/MDAnalysis/topology/guessers.py:146: UserWarning: Failed to guess the mass for the following atom types: HN 751s warnings.warn("Failed to guess the mass for the following atom types: {}".format(atom_type)) 751s 751s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroupWriting::test_write_frame_none[-xyz] 751s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroupWriting::test_write_frame_none[.gz-xyz] 751s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroupWriting::test_write_frame_none[.bz2-xyz] 751s /usr/lib/python3/dist-packages/MDAnalysis/topology/guessers.py:146: UserWarning: Failed to guess the mass for the following atom types: HT1 751s warnings.warn("Failed to guess the mass for the following atom types: {}".format(atom_type)) 751s 751s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroupWriting::test_write_frame_none[-xyz] 751s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroupWriting::test_write_frame_none[.gz-xyz] 751s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroupWriting::test_write_frame_none[.bz2-xyz] 751s /usr/lib/python3/dist-packages/MDAnalysis/topology/guessers.py:146: UserWarning: Failed to guess the mass for the following atom types: HT2 751s warnings.warn("Failed to guess the mass for the following atom types: {}".format(atom_type)) 751s 751s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroupWriting::test_write_frame_none[-xyz] 751s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroupWriting::test_write_frame_none[.gz-xyz] 751s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroupWriting::test_write_frame_none[.bz2-xyz] 751s /usr/lib/python3/dist-packages/MDAnalysis/topology/guessers.py:146: UserWarning: Failed to guess the mass for the following atom types: HT3 751s warnings.warn("Failed to guess the mass for the following atom types: {}".format(atom_type)) 751s 751s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroupWriting::test_write_frame_none[-xyz] 751s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroupWriting::test_write_frame_none[.gz-xyz] 751s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroupWriting::test_write_frame_none[.bz2-xyz] 751s /usr/lib/python3/dist-packages/MDAnalysis/topology/guessers.py:146: UserWarning: Failed to guess the mass for the following atom types: HZ 751s warnings.warn("Failed to guess the mass for the following atom types: {}".format(atom_type)) 751s 751s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroupWriting::test_write_frame_none[-xyz] 751s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroupWriting::test_write_frame_none[.gz-xyz] 751s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroupWriting::test_write_frame_none[.bz2-xyz] 751s /usr/lib/python3/dist-packages/MDAnalysis/topology/guessers.py:146: UserWarning: Failed to guess the mass for the following atom types: HZ1 751s warnings.warn("Failed to guess the mass for the following atom types: {}".format(atom_type)) 751s 751s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroupWriting::test_write_frame_none[-xyz] 751s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroupWriting::test_write_frame_none[.gz-xyz] 751s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroupWriting::test_write_frame_none[.bz2-xyz] 751s /usr/lib/python3/dist-packages/MDAnalysis/topology/guessers.py:146: UserWarning: Failed to guess the mass for the following atom types: HZ2 751s warnings.warn("Failed to guess the mass for the following atom types: {}".format(atom_type)) 751s 751s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroupWriting::test_write_frame_none[-xyz] 751s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroupWriting::test_write_frame_none[.gz-xyz] 751s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroupWriting::test_write_frame_none[.bz2-xyz] 751s /usr/lib/python3/dist-packages/MDAnalysis/topology/guessers.py:146: UserWarning: Failed to guess the mass for the following atom types: HZ3 751s warnings.warn("Failed to guess the mass for the following atom types: {}".format(atom_type)) 751s 751s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroupWriting::test_write_frame_none[-xyz] 751s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroupWriting::test_write_frame_none[.gz-xyz] 751s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroupWriting::test_write_frame_none[.bz2-xyz] 751s /usr/lib/python3/dist-packages/MDAnalysis/topology/guessers.py:146: UserWarning: Failed to guess the mass for the following atom types: ND1 751s warnings.warn("Failed to guess the mass for the following atom types: {}".format(atom_type)) 751s 751s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroupWriting::test_write_frame_none[-xyz] 751s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroupWriting::test_write_frame_none[.gz-xyz] 751s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroupWriting::test_write_frame_none[.bz2-xyz] 751s /usr/lib/python3/dist-packages/MDAnalysis/topology/guessers.py:146: UserWarning: Failed to guess the mass for the following atom types: ND2 751s warnings.warn("Failed to guess the mass for the following atom types: {}".format(atom_type)) 751s 751s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroupWriting::test_write_frame_none[-xyz] 751s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroupWriting::test_write_frame_none[.gz-xyz] 751s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroupWriting::test_write_frame_none[.bz2-xyz] 751s /usr/lib/python3/dist-packages/MDAnalysis/topology/guessers.py:146: UserWarning: Failed to guess the mass for the following atom types: NE2 751s warnings.warn("Failed to guess the mass for the following atom types: {}".format(atom_type)) 751s 751s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroupWriting::test_write_frame_none[-xyz] 751s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroupWriting::test_write_frame_none[.gz-xyz] 751s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroupWriting::test_write_frame_none[.bz2-xyz] 751s /usr/lib/python3/dist-packages/MDAnalysis/topology/guessers.py:146: UserWarning: Failed to guess the mass for the following atom types: NH1 751s warnings.warn("Failed to guess the mass for the following atom types: {}".format(atom_type)) 751s 751s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroupWriting::test_write_frame_none[-xyz] 751s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroupWriting::test_write_frame_none[.gz-xyz] 751s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroupWriting::test_write_frame_none[.bz2-xyz] 751s /usr/lib/python3/dist-packages/MDAnalysis/topology/guessers.py:146: UserWarning: Failed to guess the mass for the following atom types: NH2 751s warnings.warn("Failed to guess the mass for the following atom types: {}".format(atom_type)) 751s 751s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroupWriting::test_write_frame_none[-xyz] 751s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroupWriting::test_write_frame_none[.gz-xyz] 751s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroupWriting::test_write_frame_none[.bz2-xyz] 751s /usr/lib/python3/dist-packages/MDAnalysis/topology/guessers.py:146: UserWarning: Failed to guess the mass for the following atom types: NZ 751s warnings.warn("Failed to guess the mass for the following atom types: {}".format(atom_type)) 751s 751s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroupWriting::test_write_frame_none[-xyz] 751s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroupWriting::test_write_frame_none[.gz-xyz] 751s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroupWriting::test_write_frame_none[.bz2-xyz] 751s /usr/lib/python3/dist-packages/MDAnalysis/topology/guessers.py:146: UserWarning: Failed to guess the mass for the following atom types: OD1 751s warnings.warn("Failed to guess the mass for the following atom types: {}".format(atom_type)) 751s 751s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroupWriting::test_write_frame_none[-xyz] 751s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroupWriting::test_write_frame_none[.gz-xyz] 751s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroupWriting::test_write_frame_none[.bz2-xyz] 751s /usr/lib/python3/dist-packages/MDAnalysis/topology/guessers.py:146: UserWarning: Failed to guess the mass for the following atom types: OD2 751s warnings.warn("Failed to guess the mass for the following atom types: {}".format(atom_type)) 751s 751s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroupWriting::test_write_frame_none[-xyz] 751s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroupWriting::test_write_frame_none[.gz-xyz] 751s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroupWriting::test_write_frame_none[.bz2-xyz] 751s /usr/lib/python3/dist-packages/MDAnalysis/topology/guessers.py:146: UserWarning: Failed to guess the mass for the following atom types: OE1 751s warnings.warn("Failed to guess the mass for the following atom types: {}".format(atom_type)) 751s 751s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroupWriting::test_write_frame_none[-xyz] 751s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroupWriting::test_write_frame_none[.gz-xyz] 751s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroupWriting::test_write_frame_none[.bz2-xyz] 751s /usr/lib/python3/dist-packages/MDAnalysis/topology/guessers.py:146: UserWarning: Failed to guess the mass for the following atom types: OE2 751s warnings.warn("Failed to guess the mass for the following atom types: {}".format(atom_type)) 751s 751s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroupWriting::test_write_frame_none[-xyz] 751s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroupWriting::test_write_frame_none[.gz-xyz] 751s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroupWriting::test_write_frame_none[.bz2-xyz] 751s /usr/lib/python3/dist-packages/MDAnalysis/topology/guessers.py:146: UserWarning: Failed to guess the mass for the following atom types: OG 751s warnings.warn("Failed to guess the mass for the following atom types: {}".format(atom_type)) 751s 751s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroupWriting::test_write_frame_none[-xyz] 751s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroupWriting::test_write_frame_none[.gz-xyz] 751s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroupWriting::test_write_frame_none[.bz2-xyz] 751s /usr/lib/python3/dist-packages/MDAnalysis/topology/guessers.py:146: UserWarning: Failed to guess the mass for the following atom types: OG1 751s warnings.warn("Failed to guess the mass for the following atom types: {}".format(atom_type)) 751s 751s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroupWriting::test_write_frame_none[-xyz] 751s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroupWriting::test_write_frame_none[.gz-xyz] 751s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroupWriting::test_write_frame_none[.bz2-xyz] 751s /usr/lib/python3/dist-packages/MDAnalysis/topology/guessers.py:146: UserWarning: Failed to guess the mass for the following atom types: OH 751s warnings.warn("Failed to guess the mass for the following atom types: {}".format(atom_type)) 751s 751s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroupWriting::test_write_frame_none[-xyz] 751s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroupWriting::test_write_frame_none[.gz-xyz] 751s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroupWriting::test_write_frame_none[.bz2-xyz] 751s /usr/lib/python3/dist-packages/MDAnalysis/topology/guessers.py:146: UserWarning: Failed to guess the mass for the following atom types: OT1 751s warnings.warn("Failed to guess the mass for the following atom types: {}".format(atom_type)) 751s 751s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroupWriting::test_write_frame_none[-xyz] 751s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroupWriting::test_write_frame_none[.gz-xyz] 751s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroupWriting::test_write_frame_none[.bz2-xyz] 751s /usr/lib/python3/dist-packages/MDAnalysis/topology/guessers.py:146: UserWarning: Failed to guess the mass for the following atom types: OT2 751s warnings.warn("Failed to guess the mass for the following atom types: {}".format(atom_type)) 751s 751s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroupWriting::test_write_frame_none[-xyz] 751s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroupWriting::test_write_frame_none[.gz-xyz] 751s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroupWriting::test_write_frame_none[.bz2-xyz] 751s /usr/lib/python3/dist-packages/MDAnalysis/topology/guessers.py:146: UserWarning: Failed to guess the mass for the following atom types: SD 751s warnings.warn("Failed to guess the mass for the following atom types: {}".format(atom_type)) 751s 751s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroupWriting::test_write_frame_none[-xyz] 751s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroupWriting::test_write_frame_none[.gz-xyz] 751s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroupWriting::test_write_frame_none[.bz2-xyz] 751s /usr/lib/python3/dist-packages/MDAnalysis/topology/guessers.py:146: UserWarning: Failed to guess the mass for the following atom types: SG 751s warnings.warn("Failed to guess the mass for the following atom types: {}".format(atom_type)) 751s 751s testsuite/MDAnalysisTests/core/test_atomgroup.py: 17 warnings 751s testsuite/MDAnalysisTests/core/test_universe.py: 2 warnings 751s /usr/lib/python3/dist-packages/MDAnalysis/core/universe.py:833: DeprecationWarning: The bfactor topology attribute is only provided as an alias to the tempfactor attribute. It will be removed in 3.0. Please use the tempfactor attribute instead. 751s warnings.warn(BFACTOR_WARNING, DeprecationWarning) 751s 751s testsuite/MDAnalysisTests/core/test_atomgroup.py: 20 warnings 751s testsuite/MDAnalysisTests/core/test_universe.py: 4 warnings 751s testsuite/MDAnalysisTests/topology/test_mmtf.py: 3 warnings 751s /usr/lib/python3/dist-packages/MDAnalysis/core/topologyattrs.py:295: DeprecationWarning: The bfactor topology attribute is only provided as an alias to the tempfactor attribute. It will be removed in 3.0. Please use the tempfactor attribute instead. 751s warnings.warn(BFACTOR_WARNING, DeprecationWarning) 751s 751s testsuite/MDAnalysisTests/core/test_atomgroup.py: 7 warnings 751s testsuite/MDAnalysisTests/core/test_atomselections.py: 27 warnings 751s testsuite/MDAnalysisTests/topology/test_topology_str_types.py: 5 warnings 751s testsuite/MDAnalysisTests/topology/test_tprparser.py: 3 warnings 751s /usr/lib/python3/dist-packages/MDAnalysis/core/universe.py:147: UserWarning: No coordinate reader found for /tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/adk_oplsaa.tpr. Skipping this file. 751s warnings.warn('No coordinate reader found for {}. Skipping ' 751s 751s testsuite/MDAnalysisTests/core/test_atomgroup.py: 7 warnings 751s testsuite/MDAnalysisTests/core/test_wrap.py: 3 warnings 751s /usr/lib/python3/dist-packages/MDAnalysis/core/groups.py:1074: RuntimeWarning: invalid value encountered in divide 751s return np.einsum('ij,ij->j',coords,weights[:, None]) / weights.sum() 751s 751s testsuite/MDAnalysisTests/core/test_atomgroup.py: 19 warnings 751s testsuite/MDAnalysisTests/core/test_wrap.py: 12 warnings 751s /usr/lib/python3/dist-packages/MDAnalysis/core/groups.py:1104: RuntimeWarning: invalid value encountered in divide 751s _centers /= _weights.sum(axis=1)[:, None] 751s 751s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionsNucleicAcids::test_nucleic 751s /usr/lib/python3/dist-packages/MDAnalysis/core/universe.py:147: UserWarning: No coordinate reader found for /tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/analysis/1k5i_c36.psf.gz. Skipping this file. 751s warnings.warn('No coordinate reader found for {}. Skipping ' 751s 751s testsuite/MDAnalysisTests/core/test_atomselections.py::test_mass_sel[mass -10 -3-0-selkwargs11] 751s /usr/lib/python3/dist-packages/MDAnalysis/core/selection.py:988: SelectionWarning: Using float equality to select atoms is not recommended because of inherent limitations in representing numbers on computers (see https://docs.python.org/3.8/tutorial/floatingpoint.html for more). Instead, we recommend using a range to select, e.g. 'mass -11.0 to -9.0'. If you still want to compare floats, use the `atol` and `rtol` keywords to modify the tolerance for `np.isclose`. 751s warnings.warn(msg, category=SelectionWarning) 751s 751s testsuite/MDAnalysisTests/core/test_atomselections.py::test_mass_sel[mass -10 -3-0-selkwargs11] 751s /usr/lib/python3/dist-packages/MDAnalysis/core/selection.py:988: SelectionWarning: Using float equality to select atoms is not recommended because of inherent limitations in representing numbers on computers (see https://docs.python.org/3.8/tutorial/floatingpoint.html for more). Instead, we recommend using a range to select, e.g. 'mass -4.0 to -2.0'. If you still want to compare floats, use the `atol` and `rtol` keywords to modify the tolerance for `np.isclose`. 751s warnings.warn(msg, category=SelectionWarning) 751s 751s testsuite/MDAnalysisTests/core/test_atomselections.py::test_mass_sel[mass 0.3-5-selkwargs12] 751s testsuite/MDAnalysisTests/core/test_atomselections.py::test_mass_sel[mass 0.3-5-selkwargs13] 751s testsuite/MDAnalysisTests/core/test_atomselections.py::test_mass_sel[mass 0.30000000000000004-5-selkwargs15] 751s testsuite/MDAnalysisTests/core/test_atomselections.py::test_mass_sel[mass 0.3 0.30000000000000001-5-selkwargs16] 751s testsuite/MDAnalysisTests/core/test_atomselections.py::test_mass_sel[mass 0.3-10-selkwargs17] 751s testsuite/MDAnalysisTests/core/test_atomselections.py::test_mass_sel[mass 0.30000000000000004-10-selkwargs18] 751s testsuite/MDAnalysisTests/core/test_atomselections.py::test_mass_sel[mass 0.3 0.30000000000000001-10-selkwargs19] 751s /usr/lib/python3/dist-packages/MDAnalysis/core/selection.py:988: SelectionWarning: Using float equality to select atoms is not recommended because of inherent limitations in representing numbers on computers (see https://docs.python.org/3.8/tutorial/floatingpoint.html for more). Instead, we recommend using a range to select, e.g. 'mass -0.7 to 1.3'. If you still want to compare floats, use the `atol` and `rtol` keywords to modify the tolerance for `np.isclose`. 751s warnings.warn(msg, category=SelectionWarning) 751s 751s testsuite/MDAnalysisTests/core/test_groups.py::TestDecorator::test_wrap_and_unwrap_deprecation[True-True-fragments] 751s testsuite/MDAnalysisTests/core/test_groups.py::TestDecorator::test_wrap_and_unwrap_deprecation[True-True-molecules] 751s testsuite/MDAnalysisTests/core/test_groups.py::TestDecorator::test_wrap_and_unwrap_deprecation[True-True-residues] 751s testsuite/MDAnalysisTests/core/test_groups.py::TestDecorator::test_wrap_and_unwrap_deprecation[True-True-group] 751s testsuite/MDAnalysisTests/core/test_groups.py::TestDecorator::test_wrap_and_unwrap_deprecation[True-True-segments] 751s testsuite/MDAnalysisTests/transformations/test_rotate.py::test_rotateby_atomgroup_cog_pbc 751s testsuite/MDAnalysisTests/transformations/test_rotate.py::test_rotateby_atomgroup_com_pbc 751s testsuite/MDAnalysisTests/transformations/test_translate.py::test_center_in_box_coords_all_options 751s /usr/lib/python3/dist-packages/MDAnalysis/core/groups.py:445: DeprecationWarning: The 'pbc' kwarg has been deprecated and will be removed in version 3.0., please use 'wrap' instead 751s warnings.warn("The 'pbc' kwarg has been deprecated and will be " 751s 751s testsuite/MDAnalysisTests/core/test_topologyattrs.py::TestDeprecateBFactor::test_deprecate_bfactor_sel 751s /usr/lib/python3/dist-packages/MDAnalysis/core/selection.py:988: SelectionWarning: Using float equality to select atoms is not recommended because of inherent limitations in representing numbers on computers (see https://docs.python.org/3.8/tutorial/floatingpoint.html for more). Instead, we recommend using a range to select, e.g. 'bfactor 2.0 to 4.0'. If you still want to compare floats, use the `atol` and `rtol` keywords to modify the tolerance for `np.isclose`. 751s warnings.warn(msg, category=SelectionWarning) 751s 751s testsuite/MDAnalysisTests/lib/test_distances.py::TestCythonFunctions::test_numpy_compliance_angles[serial] 751s testsuite/MDAnalysisTests/lib/test_distances.py::TestCythonFunctions::test_numpy_compliance_angles[openmp] 751s testsuite/MDAnalysisTests/lib/test_distances.py::TestCythonFunctions::test_numpy_compliance_dihedrals[serial] 751s testsuite/MDAnalysisTests/lib/test_distances.py::TestCythonFunctions::test_numpy_compliance_dihedrals[openmp] 751s testsuite/MDAnalysisTests/lib/test_util.py::TestGeometryFunctions::test_vectors[x_axis5-y_axis5-nan] 751s /usr/lib/python3/dist-packages/MDAnalysis/lib/mdamath.py:156: RuntimeWarning: invalid value encountered in scalar divide 751s x = np.dot(a, b) / (norm(a) * norm(b)) 751s 751s testsuite/MDAnalysisTests/lib/test_nsgrid.py::test_issue_2345 751s /usr/lib/python3/dist-packages/MDAnalysis/topology/guessers.py:146: UserWarning: Failed to guess the mass for the following atom types: AG 751s warnings.warn("Failed to guess the mass for the following atom types: {}".format(atom_type)) 751s 751s testsuite/MDAnalysisTests/lib/test_util.py: 48 warnings 751s /tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/lib/test_util.py:293: RuntimeWarning: invalid value encountered in sqrt 751s ref[2, 2] = np.sqrt(z * z - ref[2, 0] ** 2 - ref[2, 1] ** 2) 751s 751s testsuite/MDAnalysisTests/lib/test_util.py: 53 warnings 751s /usr/lib/python3/dist-packages/MDAnalysis/lib/mdamath.py:392: RuntimeWarning: invalid value encountered in sqrt 751s box_matrix[2, 2] = np.sqrt(lz * lz - box_matrix[2, 0] ** 2 - 751s 751s testsuite/MDAnalysisTests/lib/test_util.py: 339 warnings 751s /tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/lib/test_util.py:324: RuntimeWarning: invalid value encountered in scalar divide 751s a = np.rad2deg(np.arccos(np.dot(tri_vecs[1], tri_vecs[2]) / (y * z))) 751s 751s testsuite/MDAnalysisTests/lib/test_util.py: 363 warnings 751s /tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/lib/test_util.py:325: RuntimeWarning: invalid value encountered in scalar divide 751s b = np.rad2deg(np.arccos(np.dot(tri_vecs[0], tri_vecs[2]) / (x * z))) 751s 751s testsuite/MDAnalysisTests/lib/test_util.py: 756 warnings 751s /tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/lib/test_util.py:326: RuntimeWarning: invalid value encountered in scalar divide 751s c = np.rad2deg(np.arccos(np.dot(tri_vecs[0], tri_vecs[1]) / (x * y))) 751s 751s testsuite/MDAnalysisTests/lib/test_util.py: 43 warnings 751s /tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/lib/test_util.py:315: RuntimeWarning: invalid value encountered in scalar divide 751s ref[2, 1] = z * (cos_a - cos_b * cos_c) / sin_c 751s 751s testsuite/MDAnalysisTests/lib/test_util.py: 17 warnings 751s /tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/lib/test_util.py:315: RuntimeWarning: divide by zero encountered in scalar divide 751s ref[2, 1] = z * (cos_a - cos_b * cos_c) / sin_c 751s 751s testsuite/MDAnalysisTests/lib/test_util.py: 14 warnings 751s /usr/lib/python3/dist-packages/MDAnalysis/topology/guessers.py:146: UserWarning: Failed to guess the mass for the following atom types: E 751s warnings.warn("Failed to guess the mass for the following atom types: {}".format(atom_type)) 751s 751s testsuite/MDAnalysisTests/parallelism/test_multiprocessing.py::test_multiprocess_COG[u2] 751s testsuite/MDAnalysisTests/parallelism/test_multiprocessing.py::test_multiprocess_COG[u3] 751s testsuite/MDAnalysisTests/parallelism/test_multiprocessing.py::test_multiprocess_COG[u4] 751s testsuite/MDAnalysisTests/parallelism/test_multiprocessing.py::test_multiprocess_COG[u5] 751s testsuite/MDAnalysisTests/parallelism/test_multiprocessing.py::test_multiprocess_COG[u6] 751s testsuite/MDAnalysisTests/parallelism/test_multiprocessing.py::test_multiprocess_COG[u10] 751s testsuite/MDAnalysisTests/parallelism/test_multiprocessing.py::test_multiprocess_COG[u11] 751s testsuite/MDAnalysisTests/parallelism/test_multiprocessing.py::test_multiprocess_COG[u14] 751s /usr/lib/python3.12/multiprocessing/reduction.py:51: UserWarning: Reader has no dt information, set to 1.0 ps 751s cls(buf, protocol).dump(obj) 751s 751s testsuite/MDAnalysisTests/parallelism/test_multiprocessing.py: 22 warnings 751s /tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/parallelism/test_multiprocessing.py:216: UserWarning: Reader has no dt information, set to 1.0 ps 751s ps = pickle.dumps(ref_reader) 751s 751s testsuite/MDAnalysisTests/parallelism/test_pickle_transformation.py::test_add_PositionAverager_pickle[u0] 751s testsuite/MDAnalysisTests/transformations/test_positionaveraging.py::test_posavging_fwd 751s testsuite/MDAnalysisTests/transformations/test_positionaveraging.py::test_posavging_bwd 751s testsuite/MDAnalysisTests/transformations/test_positionaveraging.py::test_posavging_reset 751s testsuite/MDAnalysisTests/transformations/test_positionaveraging.py::test_posavging_specific 751s /usr/lib/python3/dist-packages/MDAnalysis/transformations/positionaveraging.py:193: Warning: Cannot average position for non sequentialiterations. Averager will be reset. 751s warnings.warn('Cannot average position for non sequential' 751s 751s testsuite/MDAnalysisTests/topology/test_guessers.py::TestGuessMasses::test_guess_masses_miss 751s /usr/lib/python3/dist-packages/MDAnalysis/topology/guessers.py:146: UserWarning: Failed to guess the mass for the following atom types: Z 751s warnings.warn("Failed to guess the mass for the following atom types: {}".format(atom_type)) 751s 751s testsuite/MDAnalysisTests/topology/test_hoomdxml.py::TestHoomdXMLParser::test_creates_universe 751s testsuite/MDAnalysisTests/topology/test_topology_str_types.py::test_str_types[XML-/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/C12x64.xml.bz2-name] 751s testsuite/MDAnalysisTests/topology/test_topology_str_types.py::test_str_types[XML-/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/C12x64.xml.bz2-resname] 751s testsuite/MDAnalysisTests/topology/test_topology_str_types.py::test_str_types[XML-/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/C12x64.xml.bz2-type] 751s testsuite/MDAnalysisTests/topology/test_topology_str_types.py::test_str_types[XML-/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/C12x64.xml.bz2-segid] 751s testsuite/MDAnalysisTests/topology/test_topology_str_types.py::test_str_types[XML-/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/C12x64.xml.bz2-moltype] 751s /usr/lib/python3/dist-packages/MDAnalysis/core/universe.py:147: UserWarning: No coordinate reader found for /tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/C12x64.xml.bz2. Skipping this file. 751s warnings.warn('No coordinate reader found for {}. Skipping ' 751s 751s testsuite/MDAnalysisTests/topology/test_itp.py: 10 warnings 751s /usr/lib/python3/dist-packages/MDAnalysis/core/universe.py:147: UserWarning: No coordinate reader found for /tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/gromacs_ala10.itp. Skipping this file. 751s warnings.warn('No coordinate reader found for {}. Skipping ' 751s 751s testsuite/MDAnalysisTests/topology/test_itp.py::TestITPNoMass::test_creates_universe 751s testsuite/MDAnalysisTests/topology/test_itp.py::TestITPNoMass::test_mass_guess 751s /usr/lib/python3/dist-packages/MDAnalysis/core/universe.py:147: UserWarning: No coordinate reader found for /tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/itp_nomass.itp. Skipping this file. 751s warnings.warn('No coordinate reader found for {}. Skipping ' 751s 751s testsuite/MDAnalysisTests/topology/test_itp.py::TestITPAtomtypes::test_creates_universe 751s testsuite/MDAnalysisTests/topology/test_itp.py::TestITPAtomtypes::test_charge_parse 751s testsuite/MDAnalysisTests/topology/test_itp.py::TestITPAtomtypes::test_mass_parse_or_guess 751s /usr/lib/python3/dist-packages/MDAnalysis/core/universe.py:147: UserWarning: No coordinate reader found for /tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/atomtypes_charge.itp. Skipping this file. 751s warnings.warn('No coordinate reader found for {}. Skipping ' 751s 751s testsuite/MDAnalysisTests/topology/test_itp.py::TestDifferentDirectivesITP::test_creates_universe 751s testsuite/MDAnalysisTests/topology/test_itp.py::TestDifferentDirectivesITP::test_bonds_atom_counts 751s testsuite/MDAnalysisTests/topology/test_itp.py::TestDifferentDirectivesITP::test_dihedrals_atom_counts 751s testsuite/MDAnalysisTests/topology/test_itp.py::TestDifferentDirectivesITP::test_dihedrals_identity 751s /usr/lib/python3/dist-packages/MDAnalysis/core/universe.py:147: UserWarning: No coordinate reader found for /tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/edited_itp.itp. Skipping this file. 751s warnings.warn('No coordinate reader found for {}. Skipping ' 751s 751s testsuite/MDAnalysisTests/topology/test_itp.py::TestITPNoKeywords::test_creates_universe 751s testsuite/MDAnalysisTests/topology/test_itp.py::TestITPNoKeywords::test_whether_settles_types 751s testsuite/MDAnalysisTests/topology/test_itp.py::TestITPKeywords::test_creates_universe 751s testsuite/MDAnalysisTests/topology/test_itp.py::TestITPKeywords::test_whether_settles_types 751s /usr/lib/python3/dist-packages/MDAnalysis/core/universe.py:147: UserWarning: No coordinate reader found for /tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tip5p.itp. Skipping this file. 751s warnings.warn('No coordinate reader found for {}. Skipping ' 751s 751s testsuite/MDAnalysisTests/topology/test_itp.py::TestNestedIfs::test_creates_universe 751s testsuite/MDAnalysisTests/topology/test_itp.py::TestNestedIfs::test_heavy_atom 751s /usr/lib/python3/dist-packages/MDAnalysis/core/universe.py:147: UserWarning: No coordinate reader found for /tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/spce.itp. Skipping this file. 751s warnings.warn('No coordinate reader found for {}. Skipping ' 751s 751s testsuite/MDAnalysisTests/topology/test_itp.py::TestReadTop::test_creates_universe 751s testsuite/MDAnalysisTests/topology/test_itp.py::TestReadTop::test_sequential 751s /usr/lib/python3/dist-packages/MDAnalysis/core/universe.py:147: UserWarning: No coordinate reader found for /tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/gromacs_ala10.top. Skipping this file. 751s warnings.warn('No coordinate reader found for {}. Skipping ' 751s 751s testsuite/MDAnalysisTests/topology/test_itp.py::TestRelativePath::test_relstring 751s testsuite/MDAnalysisTests/topology/test_itp.py::TestRelativePath::test_relpath 751s /usr/lib/python3/dist-packages/MDAnalysis/core/universe.py:147: UserWarning: No coordinate reader found for ../sub1/test.itp. Skipping this file. 751s warnings.warn('No coordinate reader found for {}. Skipping ' 751s 751s testsuite/MDAnalysisTests/topology/test_itp.py::TestRelativePath::test_relative_path 751s /usr/lib/python3/dist-packages/MDAnalysis/core/universe.py:147: UserWarning: No coordinate reader found for ../test.itp. Skipping this file. 751s warnings.warn('No coordinate reader found for {}. Skipping ' 751s 751s testsuite/MDAnalysisTests/topology/test_pdb.py::test_PDB_no_resid 751s /usr/lib/python3/dist-packages/MDAnalysis/topology/PDBParser.py:290: UserWarning: PDB file is missing resid information. Defaulted to '1' 751s warnings.warn("PDB file is missing resid information. " 751s 751s testsuite/MDAnalysisTests/topology/test_pdb.py::test_wrong_elements_warnings 751s /usr/lib/python3/dist-packages/MDAnalysis/topology/guessers.py:146: UserWarning: Failed to guess the mass for the following atom types: XX 751s warnings.warn("Failed to guess the mass for the following atom types: {}".format(atom_type)) 751s 751s testsuite/MDAnalysisTests/topology/test_psf.py::TestPSFParser::test_creates_universe[bz2] 751s /usr/lib/python3/dist-packages/MDAnalysis/core/universe.py:147: UserWarning: No coordinate reader found for /tmp/pytest-of-ubuntu/pytest-0/test_creates_universe_bz2_0/file.psf.bz2. Skipping this file. 751s warnings.warn('No coordinate reader found for {}. Skipping ' 751s 751s testsuite/MDAnalysisTests/topology/test_psf.py::TestPSFParser::test_bonds_atom_counts[bz2] 751s /usr/lib/python3/dist-packages/MDAnalysis/core/universe.py:147: UserWarning: No coordinate reader found for /tmp/pytest-of-ubuntu/pytest-0/test_bonds_atom_counts_bz2_0/file.psf.bz2. Skipping this file. 751s warnings.warn('No coordinate reader found for {}. Skipping ' 751s 751s testsuite/MDAnalysisTests/topology/test_psf.py::TestPSFParser::test_angles_atom_counts[bz2] 751s /usr/lib/python3/dist-packages/MDAnalysis/core/universe.py:147: UserWarning: No coordinate reader found for /tmp/pytest-of-ubuntu/pytest-0/test_angles_atom_counts_bz2_0/file.psf.bz2. Skipping this file. 751s warnings.warn('No coordinate reader found for {}. Skipping ' 751s 751s testsuite/MDAnalysisTests/topology/test_psf.py::TestPSFParser::test_dihedrals_atom_counts[bz2] 751s /usr/lib/python3/dist-packages/MDAnalysis/core/universe.py:147: UserWarning: No coordinate reader found for /tmp/pytest-of-ubuntu/pytest-0/test_dihedrals_atom_counts_bz20/file.psf.bz2. Skipping this file. 751s warnings.warn('No coordinate reader found for {}. Skipping ' 751s 751s testsuite/MDAnalysisTests/topology/test_psf.py::TestNAMDPSFParser::test_creates_universe 751s /usr/lib/python3/dist-packages/MDAnalysis/core/universe.py:147: UserWarning: No coordinate reader found for /tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/namd_cgenff.psf. Skipping this file. 751s warnings.warn('No coordinate reader found for {}. Skipping ' 751s 751s testsuite/MDAnalysisTests/topology/test_psf.py::TestPSFParser2::test_creates_universe 751s /usr/lib/python3/dist-packages/MDAnalysis/core/universe.py:147: UserWarning: No coordinate reader found for /tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/2r9r-1b.psf. Skipping this file. 751s warnings.warn('No coordinate reader found for {}. Skipping ' 751s 751s testsuite/MDAnalysisTests/topology/test_psf.py::TestPSFParserNoTop::test_creates_universe 751s /usr/lib/python3/dist-packages/MDAnalysis/core/universe.py:147: UserWarning: No coordinate reader found for /tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/adk_notop.psf. Skipping this file. 751s warnings.warn('No coordinate reader found for {}. Skipping ' 751s 751s testsuite/MDAnalysisTests/topology/test_psf.py::test_psf_nosegid 751s /usr/lib/python3/dist-packages/MDAnalysis/core/universe.py:147: UserWarning: No coordinate reader found for /tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/nosegid.psf. Skipping this file. 751s warnings.warn('No coordinate reader found for {}. Skipping ' 751s 751s testsuite/MDAnalysisTests/topology/test_top.py: 5 warnings 751s testsuite/MDAnalysisTests/topology/test_topology_str_types.py: 5 warnings 751s /usr/lib/python3/dist-packages/MDAnalysis/core/universe.py:147: UserWarning: No coordinate reader found for /tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/Amber/ache.prmtop. Skipping this file. 751s warnings.warn('No coordinate reader found for {}. Skipping ' 751s 751s testsuite/MDAnalysisTests/topology/test_top.py::TestPRMChainidParser::test_creates_universe 751s testsuite/MDAnalysisTests/topology/test_top.py::TestPRMChainidParser::test_bonds_atom_counts 751s testsuite/MDAnalysisTests/topology/test_top.py::TestPRMChainidParser::test_angles_atom_counts 751s testsuite/MDAnalysisTests/topology/test_top.py::TestPRMChainidParser::test_dihedrals_atom_counts 751s testsuite/MDAnalysisTests/topology/test_top.py::TestPRMChainidParser::test_impropers_atom_counts 751s testsuite/MDAnalysisTests/topology/test_top.py::TestPRMChainidParser::test_chainIDs 751s /usr/lib/python3/dist-packages/MDAnalysis/core/universe.py:147: UserWarning: No coordinate reader found for /tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/Amber/ache_chainid.prmtop.bz2. Skipping this file. 751s warnings.warn('No coordinate reader found for {}. Skipping ' 751s 751s testsuite/MDAnalysisTests/topology/test_top.py: 5 warnings 751s testsuite/MDAnalysisTests/topology/test_topology_str_types.py: 5 warnings 751s /usr/lib/python3/dist-packages/MDAnalysis/core/universe.py:147: UserWarning: No coordinate reader found for /tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/Amber/anti.top. Skipping this file. 751s warnings.warn('No coordinate reader found for {}. Skipping ' 751s 751s testsuite/MDAnalysisTests/topology/test_top.py: 5 warnings 751s testsuite/MDAnalysisTests/topology/test_topology_str_types.py: 5 warnings 751s /usr/lib/python3/dist-packages/MDAnalysis/core/universe.py:147: UserWarning: No coordinate reader found for /tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/Amber/tz2.truncoct.parm7.bz2. Skipping this file. 751s warnings.warn('No coordinate reader found for {}. Skipping ' 751s 751s testsuite/MDAnalysisTests/topology/test_top.py::TestPRM2::test_creates_universe 751s testsuite/MDAnalysisTests/topology/test_top.py::TestPRM2::test_bonds_atom_counts 751s testsuite/MDAnalysisTests/topology/test_top.py::TestPRM2::test_angles_atom_counts 751s testsuite/MDAnalysisTests/topology/test_top.py::TestPRM2::test_dihedrals_atom_counts 751s testsuite/MDAnalysisTests/topology/test_top.py::TestPRM2::test_impropers_atom_counts 751s /usr/lib/python3/dist-packages/MDAnalysis/core/universe.py:147: UserWarning: No coordinate reader found for /tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/Amber/capped-ala.prmtop. Skipping this file. 751s warnings.warn('No coordinate reader found for {}. Skipping ' 751s 751s testsuite/MDAnalysisTests/topology/test_top.py::TestPRMNCRST::test_creates_universe 751s testsuite/MDAnalysisTests/topology/test_top.py::TestPRMNCRST::test_bonds_atom_counts 751s testsuite/MDAnalysisTests/topology/test_top.py::TestPRMNCRST::test_angles_atom_counts 751s testsuite/MDAnalysisTests/topology/test_top.py::TestPRMNCRST::test_dihedrals_atom_counts 751s testsuite/MDAnalysisTests/topology/test_top.py::TestPRMNCRST::test_impropers_atom_counts 751s /usr/lib/python3/dist-packages/MDAnalysis/core/universe.py:147: UserWarning: No coordinate reader found for /tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/Amber/ace_mbondi3.parm7. Skipping this file. 751s warnings.warn('No coordinate reader found for {}. Skipping ' 751s 751s testsuite/MDAnalysisTests/topology/test_top.py: 42 warnings 751s /usr/lib/python3/dist-packages/MDAnalysis/topology/TOPParser.py:306: UserWarning: Unknown ATOMIC_NUMBER value found for some atoms, these have been given an empty element record. If needed these can be guessed using MDAnalysis.topology.guessers. 751s warnings.warn(msg) 751s 751s testsuite/MDAnalysisTests/topology/test_top.py::TestPRMNCRST_negative::test_creates_universe 751s testsuite/MDAnalysisTests/topology/test_top.py::TestPRMNCRST_negative::test_bonds_atom_counts 751s testsuite/MDAnalysisTests/topology/test_top.py::TestPRMNCRST_negative::test_angles_atom_counts 751s testsuite/MDAnalysisTests/topology/test_top.py::TestPRMNCRST_negative::test_dihedrals_atom_counts 751s testsuite/MDAnalysisTests/topology/test_top.py::TestPRMNCRST_negative::test_impropers_atom_counts 751s /usr/lib/python3/dist-packages/MDAnalysis/core/universe.py:147: UserWarning: No coordinate reader found for /tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/Amber/ace_mbondi3.negative.parm7. Skipping this file. 751s warnings.warn('No coordinate reader found for {}. Skipping ' 751s 751s testsuite/MDAnalysisTests/topology/test_top.py::TestPRMEP::test_creates_universe 751s testsuite/MDAnalysisTests/topology/test_top.py::TestPRMEP::test_bonds_atom_counts 751s testsuite/MDAnalysisTests/topology/test_top.py::TestPRMEP::test_angles_atom_counts 751s testsuite/MDAnalysisTests/topology/test_top.py::TestPRMEP::test_dihedrals_atom_counts 751s testsuite/MDAnalysisTests/topology/test_top.py::TestPRMEP::test_impropers_atom_counts 751s /usr/lib/python3/dist-packages/MDAnalysis/core/universe.py:147: UserWarning: No coordinate reader found for /tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/Amber/ala.ff19SB.OPC.parm7.bz2. Skipping this file. 751s warnings.warn('No coordinate reader found for {}. Skipping ' 751s 751s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRGromacsVersions::test_creates_universe[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_4.0.tpr] 751s /usr/lib/python3/dist-packages/MDAnalysis/core/universe.py:147: UserWarning: No coordinate reader found for /tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_4.0.tpr. Skipping this file. 751s warnings.warn('No coordinate reader found for {}. Skipping ' 751s 751s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRGromacsVersions::test_creates_universe[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_4.0.2.tpr] 751s /usr/lib/python3/dist-packages/MDAnalysis/core/universe.py:147: UserWarning: No coordinate reader found for /tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_4.0.2.tpr. Skipping this file. 751s warnings.warn('No coordinate reader found for {}. Skipping ' 751s 751s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRGromacsVersions::test_creates_universe[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_4.0.3.tpr] 751s /usr/lib/python3/dist-packages/MDAnalysis/core/universe.py:147: UserWarning: No coordinate reader found for /tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_4.0.3.tpr. Skipping this file. 751s warnings.warn('No coordinate reader found for {}. Skipping ' 751s 751s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRGromacsVersions::test_creates_universe[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_4.0.4.tpr] 751s /usr/lib/python3/dist-packages/MDAnalysis/core/universe.py:147: UserWarning: No coordinate reader found for /tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_4.0.4.tpr. Skipping this file. 751s warnings.warn('No coordinate reader found for {}. Skipping ' 751s 751s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRGromacsVersions::test_creates_universe[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_4.0.5.tpr] 751s /usr/lib/python3/dist-packages/MDAnalysis/core/universe.py:147: UserWarning: No coordinate reader found for /tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_4.0.5.tpr. Skipping this file. 751s warnings.warn('No coordinate reader found for {}. Skipping ' 751s 751s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRGromacsVersions::test_creates_universe[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_4.0.6.tpr] 751s /usr/lib/python3/dist-packages/MDAnalysis/core/universe.py:147: UserWarning: No coordinate reader found for /tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_4.0.6.tpr. Skipping this file. 751s warnings.warn('No coordinate reader found for {}. Skipping ' 751s 751s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRGromacsVersions::test_creates_universe[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_4.0.7.tpr] 751s /usr/lib/python3/dist-packages/MDAnalysis/core/universe.py:147: UserWarning: No coordinate reader found for /tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_4.0.7.tpr. Skipping this file. 751s warnings.warn('No coordinate reader found for {}. Skipping ' 751s 751s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRGromacsVersions::test_creates_universe[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_4.5.tpr] 751s /usr/lib/python3/dist-packages/MDAnalysis/core/universe.py:147: UserWarning: No coordinate reader found for /tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_4.5.tpr. Skipping this file. 751s warnings.warn('No coordinate reader found for {}. Skipping ' 751s 751s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRGromacsVersions::test_creates_universe[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_4.5.1.tpr] 751s /usr/lib/python3/dist-packages/MDAnalysis/core/universe.py:147: UserWarning: No coordinate reader found for /tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_4.5.1.tpr. Skipping this file. 751s warnings.warn('No coordinate reader found for {}. Skipping ' 751s 751s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRGromacsVersions::test_creates_universe[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_4.5.2.tpr] 751s /usr/lib/python3/dist-packages/MDAnalysis/core/universe.py:147: UserWarning: No coordinate reader found for /tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_4.5.2.tpr. Skipping this file. 751s warnings.warn('No coordinate reader found for {}. Skipping ' 751s 751s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRGromacsVersions::test_creates_universe[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_4.5.3.tpr] 751s /usr/lib/python3/dist-packages/MDAnalysis/core/universe.py:147: UserWarning: No coordinate reader found for /tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_4.5.3.tpr. Skipping this file. 751s warnings.warn('No coordinate reader found for {}. Skipping ' 751s 751s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRGromacsVersions::test_creates_universe[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_4.5.4.tpr] 751s /usr/lib/python3/dist-packages/MDAnalysis/core/universe.py:147: UserWarning: No coordinate reader found for /tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_4.5.4.tpr. Skipping this file. 751s warnings.warn('No coordinate reader found for {}. Skipping ' 751s 751s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRGromacsVersions::test_creates_universe[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_4.5.5.tpr] 751s /usr/lib/python3/dist-packages/MDAnalysis/core/universe.py:147: UserWarning: No coordinate reader found for /tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_4.5.5.tpr. Skipping this file. 751s warnings.warn('No coordinate reader found for {}. Skipping ' 751s 751s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRGromacsVersions::test_creates_universe[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_5.0.2.tpr] 751s /usr/lib/python3/dist-packages/MDAnalysis/core/universe.py:147: UserWarning: No coordinate reader found for /tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_5.0.2.tpr. Skipping this file. 751s warnings.warn('No coordinate reader found for {}. Skipping ' 751s 751s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRGromacsVersions::test_creates_universe[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_5.0.4.tpr] 751s /usr/lib/python3/dist-packages/MDAnalysis/core/universe.py:147: UserWarning: No coordinate reader found for /tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_5.0.4.tpr. Skipping this file. 751s warnings.warn('No coordinate reader found for {}. Skipping ' 751s 751s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRGromacsVersions::test_creates_universe[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_5.0.5.tpr] 751s /usr/lib/python3/dist-packages/MDAnalysis/core/universe.py:147: UserWarning: No coordinate reader found for /tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_5.0.5.tpr. Skipping this file. 751s warnings.warn('No coordinate reader found for {}. Skipping ' 751s 751s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRGromacsVersions::test_creates_universe[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_5.1.tpr] 751s /usr/lib/python3/dist-packages/MDAnalysis/core/universe.py:147: UserWarning: No coordinate reader found for /tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_5.1.tpr. Skipping this file. 751s warnings.warn('No coordinate reader found for {}. Skipping ' 751s 751s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRGromacsVersions::test_creates_universe[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_2016.tpr] 751s /usr/lib/python3/dist-packages/MDAnalysis/core/universe.py:147: UserWarning: No coordinate reader found for /tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_2016.tpr. Skipping this file. 751s warnings.warn('No coordinate reader found for {}. Skipping ' 751s 751s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRGromacsVersions::test_creates_universe[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_2018.tpr] 751s /usr/lib/python3/dist-packages/MDAnalysis/core/universe.py:147: UserWarning: No coordinate reader found for /tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_2018.tpr. Skipping this file. 751s warnings.warn('No coordinate reader found for {}. Skipping ' 751s 751s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRGromacsVersions::test_creates_universe[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_2019-beta3.tpr] 751s /usr/lib/python3/dist-packages/MDAnalysis/core/universe.py:147: UserWarning: No coordinate reader found for /tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_2019-beta3.tpr. Skipping this file. 751s warnings.warn('No coordinate reader found for {}. Skipping ' 751s 751s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRGromacsVersions::test_creates_universe[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_2020.tpr] 751s /usr/lib/python3/dist-packages/MDAnalysis/core/universe.py:147: UserWarning: No coordinate reader found for /tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_2020.tpr. Skipping this file. 751s warnings.warn('No coordinate reader found for {}. Skipping ' 751s 751s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRGromacsVersions::test_creates_universe[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_2020_double.tpr] 751s /usr/lib/python3/dist-packages/MDAnalysis/core/universe.py:147: UserWarning: No coordinate reader found for /tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_2020_double.tpr. Skipping this file. 751s warnings.warn('No coordinate reader found for {}. Skipping ' 751s 751s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRGromacsVersions::test_creates_universe[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_2021.tpr] 751s /usr/lib/python3/dist-packages/MDAnalysis/core/universe.py:147: UserWarning: No coordinate reader found for /tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_2021.tpr. Skipping this file. 751s warnings.warn('No coordinate reader found for {}. Skipping ' 751s 751s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRGromacsVersions::test_creates_universe[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_2021_double.tpr] 751s /usr/lib/python3/dist-packages/MDAnalysis/core/universe.py:147: UserWarning: No coordinate reader found for /tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_2021_double.tpr. Skipping this file. 751s warnings.warn('No coordinate reader found for {}. Skipping ' 751s 751s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRGromacsVersions::test_creates_universe[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_2022-rc1.tpr] 751s /usr/lib/python3/dist-packages/MDAnalysis/core/universe.py:147: UserWarning: No coordinate reader found for /tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_2022-rc1.tpr. Skipping this file. 751s warnings.warn('No coordinate reader found for {}. Skipping ' 751s 751s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRGromacsVersions::test_creates_universe[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_2023.tpr] 751s /usr/lib/python3/dist-packages/MDAnalysis/core/universe.py:147: UserWarning: No coordinate reader found for /tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_2023.tpr. Skipping this file. 751s warnings.warn('No coordinate reader found for {}. Skipping ' 751s 751s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRDouble::test_creates_universe 751s /usr/lib/python3/dist-packages/MDAnalysis/core/universe.py:147: UserWarning: No coordinate reader found for /tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/drew_gmx_4.5.5.double.tpr. Skipping this file. 751s warnings.warn('No coordinate reader found for {}. Skipping ' 751s 751s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPR46x::test_creates_universe[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/ab42_gmx_4.6.tpr] 751s /usr/lib/python3/dist-packages/MDAnalysis/core/universe.py:147: UserWarning: No coordinate reader found for /tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/ab42_gmx_4.6.tpr. Skipping this file. 751s warnings.warn('No coordinate reader found for {}. Skipping ' 751s 751s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPR46x::test_creates_universe[/tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/ab42_gmx_4.6.1.tpr] 751s /usr/lib/python3/dist-packages/MDAnalysis/core/universe.py:147: UserWarning: No coordinate reader found for /tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/data/tprs/ab42_gmx_4.6.1.tpr. Skipping this file. 751s warnings.warn('No coordinate reader found for {}. Skipping ' 751s 751s testsuite/MDAnalysisTests/transformations/test_fit.py::test_fit_translation_no_masses 751s /usr/lib/python3/dist-packages/MDAnalysis/analysis/align.py:1509: SelectionWarning: Atoms could not be matched since they don't contain masses. 751s warnings.warn(msg, category=SelectionWarning) 751s 751s testsuite/MDAnalysisTests/transformations/test_nojump.py::test_nojump_constantvel_stride_2 751s /usr/lib/python3/dist-packages/MDAnalysis/transformations/nojump.py:139: UserWarning: NoJump detected that the interval between frames is unequal.We are resetting the reference frame to the current timestep. 751s warnings.warn( 751s 751s testsuite/MDAnalysisTests/utils/test_persistence.py::TestAtomGroupPickle::test_unpickle 751s /tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/utils/test_persistence.py:60: UserWarning: Reader has no dt information, set to 1.0 ps 751s return pickle.dumps(ag, protocol=pickle.HIGHEST_PROTOCOL) 751s 751s testsuite/MDAnalysisTests/utils/test_persistence.py::TestAtomGroupPickle::test_pickle_unpickle_empty 751s /tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/utils/test_persistence.py:86: UserWarning: Reader has no dt information, set to 1.0 ps 751s pickle_str = pickle.dumps(ag, protocol=pickle.HIGHEST_PROTOCOL) 751s 751s testsuite/MDAnalysisTests/utils/test_persistence.py::TestAtomGroupPickle::test_unpickle_two_ag 751s /tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/utils/test_persistence.py:65: UserWarning: Reader has no dt information, set to 1.0 ps 751s return pickle.dumps((ag, ag_2), protocol=pickle.HIGHEST_PROTOCOL) 751s 751s testsuite/MDAnalysisTests/utils/test_persistence.py::TestAtomGroupPickle::test_unpickle_ag_with_universe_f 751s /tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/utils/test_persistence.py:70: UserWarning: Reader has no dt information, set to 1.0 ps 751s return pickle.dumps((universe, ag), protocol=pickle.HIGHEST_PROTOCOL) 751s 751s testsuite/MDAnalysisTests/utils/test_persistence.py::TestAtomGroupPickle::test_unpickle_ag_with_universe 751s /tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/utils/test_persistence.py:75: UserWarning: Reader has no dt information, set to 1.0 ps 751s return pickle.dumps((ag, universe), protocol=pickle.HIGHEST_PROTOCOL) 751s 751s testsuite/MDAnalysisTests/utils/test_persistence.py::TestPicklingUpdatingAtomGroups::test_pickling_uag 751s /tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/utils/test_persistence.py:123: UserWarning: Reader has no dt information, set to 1.0 ps 751s pickle_str = pickle.dumps(uag, protocol=pickle.HIGHEST_PROTOCOL) 751s 751s testsuite/MDAnalysisTests/utils/test_persistence.py::TestPicklingUpdatingAtomGroups::test_pickling_uag_of_uag 751s /tmp/autopkgtest.YRAxix/build.1X3/src/testsuite/MDAnalysisTests/utils/test_persistence.py:131: UserWarning: Reader has no dt information, set to 1.0 ps 751s pickle_str = pickle.dumps(uag2, protocol=pickle.HIGHEST_PROTOCOL) 751s 751s testsuite/MDAnalysisTests/utils/test_streamio.py: 10 warnings 751s /usr/lib/python3/dist-packages/MDAnalysis/lib/util.py:676: RuntimeWarning: Constructed NamedStream from a NamedStream 751s warnings.warn("Constructed NamedStream from a NamedStream", 751s 751s testsuite/MDAnalysisTests/utils/test_units.py::TestConstants::test_constant[Boltzman_constant-0.008314462159] 751s /usr/lib/python3/dist-packages/MDAnalysis/units.py:183: DeprecationWarning: Please use 'Boltzmann_constant' henceforth. The key 'Boltzman_constant' was a typo and will be removed in MDAnalysis 2.8.0. 751s warnings.warn(wmsg, DeprecationWarning) 751s 751s -- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html 751s = 17856 passed, 569 skipped, 804 deselected, 4 xfailed, 2 xpassed, 6228 warnings in 541.82s (0:09:01) = 773s 773s DueCredit Report: 773s - Molecular simulation analysis library / MDAnalysis (v 2.7.0) [1, 2] 773s - Bond-Angle-Torsions Coordinate Transformation / MDAnalysis.analysis.bat.BAT (v 2.7.0) [3] 773s - Dielectric analysis / MDAnalysis.analysis.dielectric (v 2.7.0) [4] 773s - ENCORE Ensemble Comparison / MDAnalysis.analysis.encore (v 2.7.0) [5] 773s - HOLE program, HOLE trajectory analysis with orderparameters / MDAnalysis.analysis.hole2 (v 2.7.0) [6, 7, 8] 773s - Hydrogen bond analysis implementation / MDAnalysis.analysis.hydrogenbonds.hbond_analysis (v 2.7.0) [9] 773s - Hydrogen bonding autocorrelation time / MDAnalysis.analysis.hydrogenbonds.hbond_autocorrel (v 2.7.0) [10] 773s - LeafletFinder algorithm / MDAnalysis.analysis.leaflet (v 2.7.0) [2] 773s - FCA fast correlation algorithm, Mean Squared Displacements with tidynamics / MDAnalysis.analysis.msd (v 2.7.0) [11, 12] 773s - Cumulative overlap / MDAnalysis.analysis.pca (v 2.7.0) [13] 773s - Path Similarity Analysis algorithm and implementation / MDAnalysis.analysis.psa (v 2.7.0) [14] 773s - Specifications of the H5MD standard, MDAnalysis trajectory reader/writer of the H5MDformat / MDAnalysis.coordinates.H5MD (v 2.7.0, 1.1) [15, 16] 773s - MMTF Reader / MDAnalysis.coordinates.MMTF (v 2.7.0) [17] 773s - The TNG paper / MDAnalysis.coordinates.TNG (v 2.7.0) [18] 773s - QCProt implementation / MDAnalysis.lib.qcprot (v 2.7.0) [19, 20] 773s - MMTF Parser / MDAnalysis.topology.MMTFParser (v 2.7.0) [17] 773s - Works through the orthogonal case for unwrapping, and proposes the non-orthogonal approach. / MDAnalysis.transformations.nojump (v 2.7.0) [21] 773s - Scientific tools library / numpy (v 1.26.4) [22] 773s 773s 2 packages cited 773s 16 modules cited 773s 0 functions cited 773s 773s References 773s ---------- 773s 773s [1] Gowers, R. et al., 2016. MDAnalysis: A Python Package for the Rapid Analysis of Molecular Dynamics Simulations. In Proceedings of the 15th Python in Science Conference. SciPy. SciPy, pp. 98–105. 773s [2] Michaud‐Agrawal, N. et al., 2011. MDAnalysis: A toolkit for the analysis of molecular dynamics simulations. Journal of Computational Chemistry, 32(10), pp.2319–2327. 773s [3] Minh, D.D.L., 2019. Alchemical Grid Dock (AlGDock): Binding Free Energy Calculations between Flexible Ligands and Rigid Receptors. Journal of Computational Chemistry, 41(7), pp.715–730. 773s [4] Neumann, M., 1983. Dipole moment fluctuation formulas in computer simulations of polar systems. Molecular Physics, 50(4), pp.841–858. 773s [5] Tiberti, M. et al., 2015. ENCORE: Software for Quantitative Ensemble Comparison B. L. de Groot, ed.. PLOS Computational Biology, 11(10), p.1004415. 773s [6] Smart, O.S., Goodfellow, J.M. & Wallace, B.A., 1993. The pore dimensions of gramicidin A. Biophysical Journal, 65(6), pp.2455–2460. 773s [7] Smart, O.S. et al., 1996. HOLE: A program for the analysis of the pore dimensions of ion channel structural models. Journal of Molecular Graphics, 14(6), pp.354–360. 773s [8] Stelzl, L.S. et al., 2014. Flexible Gates Generate Occluded Intermediates in the Transport Cycle of LacY. Journal of Molecular Biology, 426(3), pp.735–751. 773s [9] Smith, P. et al., 2019. On the interaction of hyaluronic acid with synovial fluid lipid membranes. Physical Chemistry Chemical Physics, 21(19), pp.9845–9857. 773s [10] Gowers, R.J. & Carbone, P., 2015. A multiscale approach to model hydrogen bonding: The case of polyamide. The Journal of Chemical Physics, 142(22). 773s [11] de Buyl, P., 2018. tidynamics: A tiny package to compute the dynamics of stochastic and molecular simulations. Journal of Open Source Software, 3(28), p.877. 773s [12] Calandrini, V. et al., 2011. nMoldyn - Interfacing spectroscopic experiments, molecular dynamics simulations and models for time correlation functions. École thématique de la Société Française de la Neutronique, 12, pp.201–232. 773s [13] Yang, L. et al., 2008. Close Correspondence between the Motions from Principal Component Analysis of Multiple HIV-1 Protease Structures and Elastic Network Modes. Structure, 16(2), pp.321–330. 773s [14] Seyler, S.L. et al., 2015. Path Similarity Analysis: A Method for Quantifying Macromolecular Pathways E. Tajkhorshid, ed.. PLOS Computational Biology, 11(10), p.1004568. 773s [15] Jakupovic, E. & Beckstein, O., 2021. MPI-parallel Molecular Dynamics Trajectory Analysis with the H5MD Format in the MDAnalysis Python Package. In Proceedings of the 20th Python in Science Conference. SciPy. SciPy, pp. 40–48. 773s [16] de Buyl, P., Colberg, P.H. & Höfling, F., 2014. H5MD: A structured, efficient, and portable file format for molecular data. Computer Physics Communications, 185(6), pp.1546–1553. 773s [17] Bradley, A.R. et al., 2017. MMTF—An efficient file format for the transmission, visualization, and analysis of macromolecular structures D. Schneidman, ed.. PLOS Computational Biology, 13(6), p.1005575. 773s [18] Lundborg, M. et al., 2013. An efficient and extensible format, library, and API for binary trajectory data from molecular simulations. Journal of Computational Chemistry, 35(3), pp.260–269. 773s [19] Theobald, D.L., 2005. Rapid calculation of RMSDs using a quaternion-based characteristic polynomial. Acta Crystallographica Section A Foundations of Crystallography, 61(4), pp.478–480. 773s [20] Liu, P., Agrafiotis, D.K. & Theobald, D.L., Fast determination of the optimal rotational matrix for macromolecular superpositions. Journal of Computational Chemistry, 31(7), pp.1561–1563. 773s [21] Kulke, M. & Vermaas, J.V., 2022. Reversible Unwrapping Algorithm for Constant-Pressure Molecular Dynamics Simulations. Journal of Chemical Theory and Computation, 18(10), pp.6161–6171. 773s [22] Van Der Walt, S., Colbert, S.C. & Varoquaux, G., 2011. The NumPy array: a structure for efficient numerical computation. Computing in Science & Engineering, 13(2), pp.22–30. 775s autopkgtest [16:31:33]: test test-mdanalysis: -----------------------] 776s autopkgtest [16:31:34]: test test-mdanalysis: - - - - - - - - - - results - - - - - - - - - - 776s test-mdanalysis PASS 776s autopkgtest [16:31:34]: @@@@@@@@@@@@@@@@@@@@ summary 776s test-mdanalysis PASS 788s nova [W] Using flock in prodstack6-s390x 788s flock: timeout while waiting to get lock 788s Creating nova instance adt-plucky-s390x-mdanalysis-20241114-161838-juju-7f2275-prod-proposed-migration-environment-20-2fc84fef-80db-418e-910a-d1a9e50cbc65 from image adt/ubuntu-plucky-s390x-server-20241114.img (UUID 41a907ef-1f3c-4685-a0eb-228b0d61c6b5)...