0s autopkgtest [20:08:19]: starting date and time: 2024-11-15 20:08:19+0000 0s autopkgtest [20:08:19]: git checkout: 0acbae0a WIP show VirtSubproc stderr in real-time 0s autopkgtest [20:08:19]: host juju-7f2275-prod-proposed-migration-environment-2; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.ba6rmdd_/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:scikit-learn --apt-upgrade macs --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=scikit-learn/1.4.2+dfsg-6build1 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest-s390x --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-2@bos03-s390x-20.secgroup --name adt-plucky-s390x-macs-20241115-200819-juju-7f2275-prod-proposed-migration-environment-2-44f3e840-b036-482e-8c02-108558035bc5 --image adt/ubuntu-plucky-s390x-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-2 --net-id=net_prod-proposed-migration-s390x -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,keyserver.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/ 109s autopkgtest [20:10:08]: testbed dpkg architecture: s390x 109s autopkgtest [20:10:08]: testbed apt version: 2.9.8 109s autopkgtest [20:10:08]: @@@@@@@@@@@@@@@@@@@@ test bed setup 110s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease [73.9 kB] 110s Get:2 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse Sources [15.5 kB] 110s Get:3 http://ftpmaster.internal/ubuntu plucky-proposed/universe Sources [1043 kB] 110s Get:4 http://ftpmaster.internal/ubuntu plucky-proposed/restricted Sources [7016 B] 110s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/main Sources [92.2 kB] 110s Get:6 http://ftpmaster.internal/ubuntu plucky-proposed/main s390x Packages [150 kB] 110s Get:7 http://ftpmaster.internal/ubuntu plucky-proposed/universe s390x Packages [747 kB] 110s Get:8 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse s390x Packages [4940 B] 110s Fetched 2133 kB in 1s (2570 kB/s) 110s Reading package lists... 112s Reading package lists... 113s Building dependency tree... 113s Reading state information... 113s Calculating upgrade... 113s The following NEW packages will be installed: 113s libassuan9 113s The following packages will be upgraded: 113s libgpgme11t64 libseccomp2 python3-cffi-backend python3-markupsafe 113s 4 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. 113s Need to get 352 kB of archives. 113s After this operation, 352 kB of additional disk space will be used. 113s Get:1 http://ftpmaster.internal/ubuntu plucky/main s390x libseccomp2 s390x 2.5.5-1ubuntu5 [52.1 kB] 113s Get:2 http://ftpmaster.internal/ubuntu plucky/main s390x python3-cffi-backend s390x 1.17.1-2build1 [91.3 kB] 113s Get:3 http://ftpmaster.internal/ubuntu plucky/main s390x libassuan9 s390x 3.0.1-2 [41.3 kB] 113s Get:4 http://ftpmaster.internal/ubuntu plucky/main s390x libgpgme11t64 s390x 1.24.0-2ubuntu1 [154 kB] 113s Get:5 http://ftpmaster.internal/ubuntu plucky/main s390x python3-markupsafe s390x 2.1.5-1build3 [12.9 kB] 114s Fetched 352 kB in 0s (763 kB/s) 114s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 55517 files and directories currently installed.) 114s Preparing to unpack .../libseccomp2_2.5.5-1ubuntu5_s390x.deb ... 114s Unpacking libseccomp2:s390x (2.5.5-1ubuntu5) over (2.5.5-1ubuntu4) ... 114s Setting up libseccomp2:s390x (2.5.5-1ubuntu5) ... 114s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 55517 files and directories currently installed.) 114s Preparing to unpack .../python3-cffi-backend_1.17.1-2build1_s390x.deb ... 114s Unpacking python3-cffi-backend:s390x (1.17.1-2build1) over (1.17.1-2) ... 114s Selecting previously unselected package libassuan9:s390x. 114s Preparing to unpack .../libassuan9_3.0.1-2_s390x.deb ... 114s Unpacking libassuan9:s390x (3.0.1-2) ... 114s Preparing to unpack .../libgpgme11t64_1.24.0-2ubuntu1_s390x.deb ... 114s Unpacking libgpgme11t64:s390x (1.24.0-2ubuntu1) over (1.23.2-5ubuntu4) ... 114s Preparing to unpack .../python3-markupsafe_2.1.5-1build3_s390x.deb ... 114s Unpacking python3-markupsafe (2.1.5-1build3) over (2.1.5-1build2) ... 114s Setting up python3-markupsafe (2.1.5-1build3) ... 114s Setting up libassuan9:s390x (3.0.1-2) ... 114s Setting up libgpgme11t64:s390x (1.24.0-2ubuntu1) ... 114s Setting up python3-cffi-backend:s390x (1.17.1-2build1) ... 114s Processing triggers for libc-bin (2.40-1ubuntu3) ... 114s Reading package lists... 114s Building dependency tree... 114s Reading state information... 114s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 115s Hit:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease 115s Hit:2 http://ftpmaster.internal/ubuntu plucky InRelease 115s Hit:3 http://ftpmaster.internal/ubuntu plucky-updates InRelease 115s Hit:4 http://ftpmaster.internal/ubuntu plucky-security InRelease 116s Reading package lists... 116s Reading package lists... 116s Building dependency tree... 116s Reading state information... 116s Calculating upgrade... 116s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 116s Reading package lists... 116s Building dependency tree... 116s Reading state information... 116s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 119s autopkgtest [20:10:18]: testbed running kernel: Linux 6.11.0-8-generic #8-Ubuntu SMP Mon Sep 16 12:49:35 UTC 2024 119s autopkgtest [20:10:18]: @@@@@@@@@@@@@@@@@@@@ apt-source macs 128s Get:1 http://ftpmaster.internal/ubuntu plucky/universe macs 3.0.2-1 (dsc) [2152 B] 128s Get:2 http://ftpmaster.internal/ubuntu plucky/universe macs 3.0.2-1 (tar) [197 MB] 128s Get:3 http://ftpmaster.internal/ubuntu plucky/universe macs 3.0.2-1 (diff) [1268 kB] 128s gpgv: Signature made Sat Sep 7 23:10:03 2024 UTC 128s gpgv: using RSA key 724D609337113C710550D7473C26763F6C67E6E2 128s gpgv: Can't check signature: No public key 128s dpkg-source: warning: cannot verify inline signature for ./macs_3.0.2-1.dsc: no acceptable signature found 131s autopkgtest [20:10:30]: testing package macs version 3.0.2-1 131s autopkgtest [20:10:30]: build not needed 150s autopkgtest [20:10:49]: test run-unit-test: preparing testbed 151s Reading package lists... 151s Building dependency tree... 151s Reading state information... 152s Starting pkgProblemResolver with broken count: 0 152s Starting 2 pkgProblemResolver with broken count: 0 152s Done 152s The following additional packages will be installed: 152s libblas3 libgfortran5 libgomp1 liblapack3 liblbfgsb0 macs python3-cykhash 152s python3-decorator python3-hmmlearn python3-joblib python3-numpy 152s python3-scipy python3-sklearn python3-sklearn-lib python3-threadpoolctl 152s Suggested packages: 152s python-joblib-doc gcc gfortran python-numpy-doc python3-dev python3-pytest 152s python-scipy-doc python3-dap python-sklearn-doc ipython3 152s Recommended packages: 152s python3-pytest python3-simplejson python3-psutil g++ | c++-compiler 152s python3-pil python3-matplotlib 152s The following NEW packages will be installed: 152s autopkgtest-satdep libblas3 libgfortran5 libgomp1 liblapack3 liblbfgsb0 macs 152s python3-cykhash python3-decorator python3-hmmlearn python3-joblib 152s python3-numpy python3-scipy python3-sklearn python3-sklearn-lib 152s python3-threadpoolctl 152s 0 upgraded, 16 newly installed, 0 to remove and 0 not upgraded. 152s Need to get 39.0 MB/39.0 MB of archives. 152s After this operation, 170 MB of additional disk space will be used. 152s Get:1 /tmp/autopkgtest.Xyjk33/1-autopkgtest-satdep.deb autopkgtest-satdep s390x 0 [704 B] 152s Get:2 http://ftpmaster.internal/ubuntu plucky/main s390x libblas3 s390x 3.12.0-3build2 [238 kB] 152s Get:3 http://ftpmaster.internal/ubuntu plucky/main s390x libgfortran5 s390x 14.2.0-8ubuntu1 [587 kB] 152s Get:4 http://ftpmaster.internal/ubuntu plucky/main s390x libgomp1 s390x 14.2.0-8ubuntu1 [151 kB] 152s Get:5 http://ftpmaster.internal/ubuntu plucky/main s390x liblapack3 s390x 3.12.0-3build2 [2953 kB] 153s Get:6 http://ftpmaster.internal/ubuntu plucky/universe s390x liblbfgsb0 s390x 3.0+dfsg.4-1build1 [32.4 kB] 153s Get:7 http://ftpmaster.internal/ubuntu plucky/main s390x python3-numpy s390x 1:1.26.4+ds-11build1 [4113 kB] 153s Get:8 http://ftpmaster.internal/ubuntu plucky/universe s390x python3-cykhash s390x 2.0.0-3build1 [504 kB] 153s Get:9 http://ftpmaster.internal/ubuntu plucky/main s390x python3-decorator all 5.1.1-5 [10.1 kB] 153s Get:10 http://ftpmaster.internal/ubuntu plucky/universe s390x python3-scipy s390x 1.13.1-5 [17.5 MB] 153s Get:11 http://ftpmaster.internal/ubuntu plucky/universe s390x python3-joblib all 1.3.2-5 [206 kB] 153s Get:12 http://ftpmaster.internal/ubuntu plucky/universe s390x python3-threadpoolctl all 3.1.0-1 [21.3 kB] 153s Get:13 http://ftpmaster.internal/ubuntu plucky-proposed/universe s390x python3-sklearn-lib s390x 1.4.2+dfsg-6build1 [6979 kB] 153s Get:14 http://ftpmaster.internal/ubuntu plucky-proposed/universe s390x python3-sklearn all 1.4.2+dfsg-6build1 [2257 kB] 154s Get:15 http://ftpmaster.internal/ubuntu plucky/universe s390x python3-hmmlearn s390x 0.3.2-2 [126 kB] 154s Get:16 http://ftpmaster.internal/ubuntu plucky/universe s390x macs s390x 3.0.2-1 [3271 kB] 154s Fetched 39.0 MB in 2s (21.4 MB/s) 154s Selecting previously unselected package libblas3:s390x. 154s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 55524 files and directories currently installed.) 154s Preparing to unpack .../00-libblas3_3.12.0-3build2_s390x.deb ... 154s Unpacking libblas3:s390x (3.12.0-3build2) ... 154s Selecting previously unselected package libgfortran5:s390x. 154s Preparing to unpack .../01-libgfortran5_14.2.0-8ubuntu1_s390x.deb ... 154s Unpacking libgfortran5:s390x (14.2.0-8ubuntu1) ... 154s Selecting previously unselected package libgomp1:s390x. 154s Preparing to unpack .../02-libgomp1_14.2.0-8ubuntu1_s390x.deb ... 154s Unpacking libgomp1:s390x (14.2.0-8ubuntu1) ... 154s Selecting previously unselected package liblapack3:s390x. 154s Preparing to unpack .../03-liblapack3_3.12.0-3build2_s390x.deb ... 154s Unpacking liblapack3:s390x (3.12.0-3build2) ... 154s Selecting previously unselected package liblbfgsb0:s390x. 154s Preparing to unpack .../04-liblbfgsb0_3.0+dfsg.4-1build1_s390x.deb ... 154s Unpacking liblbfgsb0:s390x (3.0+dfsg.4-1build1) ... 154s Selecting previously unselected package python3-numpy. 154s Preparing to unpack .../05-python3-numpy_1%3a1.26.4+ds-11build1_s390x.deb ... 154s Unpacking python3-numpy (1:1.26.4+ds-11build1) ... 154s Selecting previously unselected package python3-cykhash. 154s Preparing to unpack .../06-python3-cykhash_2.0.0-3build1_s390x.deb ... 154s Unpacking python3-cykhash (2.0.0-3build1) ... 154s Selecting previously unselected package python3-decorator. 154s Preparing to unpack .../07-python3-decorator_5.1.1-5_all.deb ... 154s Unpacking python3-decorator (5.1.1-5) ... 154s Selecting previously unselected package python3-scipy. 154s Preparing to unpack .../08-python3-scipy_1.13.1-5_s390x.deb ... 154s Unpacking python3-scipy (1.13.1-5) ... 154s Selecting previously unselected package python3-joblib. 154s Preparing to unpack .../09-python3-joblib_1.3.2-5_all.deb ... 154s Unpacking python3-joblib (1.3.2-5) ... 154s Selecting previously unselected package python3-threadpoolctl. 154s Preparing to unpack .../10-python3-threadpoolctl_3.1.0-1_all.deb ... 154s Unpacking python3-threadpoolctl (3.1.0-1) ... 154s Selecting previously unselected package python3-sklearn-lib:s390x. 154s Preparing to unpack .../11-python3-sklearn-lib_1.4.2+dfsg-6build1_s390x.deb ... 154s Unpacking python3-sklearn-lib:s390x (1.4.2+dfsg-6build1) ... 155s Selecting previously unselected package python3-sklearn. 155s Preparing to unpack .../12-python3-sklearn_1.4.2+dfsg-6build1_all.deb ... 155s Unpacking python3-sklearn (1.4.2+dfsg-6build1) ... 155s Selecting previously unselected package python3-hmmlearn. 155s Preparing to unpack .../13-python3-hmmlearn_0.3.2-2_s390x.deb ... 155s Unpacking python3-hmmlearn (0.3.2-2) ... 155s Selecting previously unselected package macs. 155s Preparing to unpack .../14-macs_3.0.2-1_s390x.deb ... 155s Unpacking macs (3.0.2-1) ... 155s Selecting previously unselected package autopkgtest-satdep. 155s Preparing to unpack .../15-1-autopkgtest-satdep.deb ... 155s Unpacking autopkgtest-satdep (0) ... 155s Setting up python3-joblib (1.3.2-5) ... 155s Setting up python3-threadpoolctl (3.1.0-1) ... 155s Setting up libgomp1:s390x (14.2.0-8ubuntu1) ... 155s Setting up python3-cykhash (2.0.0-3build1) ... 155s Setting up python3-decorator (5.1.1-5) ... 155s Setting up libblas3:s390x (3.12.0-3build2) ... 155s update-alternatives: using /usr/lib/s390x-linux-gnu/blas/libblas.so.3 to provide /usr/lib/s390x-linux-gnu/libblas.so.3 (libblas.so.3-s390x-linux-gnu) in auto mode 155s Setting up libgfortran5:s390x (14.2.0-8ubuntu1) ... 155s Setting up liblapack3:s390x (3.12.0-3build2) ... 155s update-alternatives: using /usr/lib/s390x-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/s390x-linux-gnu/liblapack.so.3 (liblapack.so.3-s390x-linux-gnu) in auto mode 155s Setting up python3-numpy (1:1.26.4+ds-11build1) ... 157s Setting up liblbfgsb0:s390x (3.0+dfsg.4-1build1) ... 157s Setting up python3-scipy (1.13.1-5) ... 161s Setting up python3-sklearn-lib:s390x (1.4.2+dfsg-6build1) ... 161s Setting up python3-sklearn (1.4.2+dfsg-6build1) ... 163s Setting up python3-hmmlearn (0.3.2-2) ... 164s Setting up macs (3.0.2-1) ... 164s Setting up autopkgtest-satdep (0) ... 164s Processing triggers for man-db (2.13.0-1) ... 164s Processing triggers for libc-bin (2.40-1ubuntu3) ... 166s (Reading database ... 59150 files and directories currently installed.) 166s Removing autopkgtest-satdep (0) ... 166s autopkgtest [20:11:05]: test run-unit-test: [----------------------- 167s + pkg=macs 167s + '[' /tmp/autopkgtest.Xyjk33/autopkgtest_tmp = '' ']' 167s + cp -a /usr/share/doc/macs/examples/aluY.chr1.bed.gz /usr/share/doc/macs/examples/gerp.chr1.bed.gz /tmp/autopkgtest.Xyjk33/autopkgtest_tmp 167s + cd /tmp/autopkgtest.Xyjk33/autopkgtest_tmp 167s + gunzip aluY.chr1.bed.gz gerp.chr1.bed.gz 167s + macs3 callpeak -t aluY.chr1.bed --nomodel -g hs -n test -B -q 0.01 167s INFO @ 15 Nov 2024 20:11:06: [39 MB] 167s # Command line: callpeak -t aluY.chr1.bed --nomodel -g hs -n test -B -q 0.01 167s # ARGUMENTS LIST: 167s # name = test 167s # format = AUTO 167s # ChIP-seq file = ['aluY.chr1.bed'] 167s # control file = None 167s # effective genome size = 2.91e+09 167s # band width = 300 167s # model fold = [5, 50] 167s # qvalue cutoff = 1.00e-02 167s # The maximum gap between significant sites is assigned as the read length/tag size. 167s # The minimum length of peaks is assigned as the predicted fragment length "d". 167s # Larger dataset will be scaled towards smaller dataset. 167s # Range for calculating regional lambda is: 10000 bps 167s # Broad region calling is off 167s # Paired-End mode is off 167s 167s INFO @ 15 Nov 2024 20:11:06: [39 MB] #1 read tag files... 167s INFO @ 15 Nov 2024 20:11:06: [39 MB] #1 read treatment tags... 167s INFO @ 15 Nov 2024 20:11:06: [39 MB] Detected format is: BED 167s INFO @ 15 Nov 2024 20:11:06: [41 MB] #1 tag size is determined as 294 bps 167s INFO @ 15 Nov 2024 20:11:06: [41 MB] #1 tag size = 294.0 167s INFO @ 15 Nov 2024 20:11:06: [41 MB] #1 total tags in treatment: 11628 167s INFO @ 15 Nov 2024 20:11:06: [41 MB] #1 user defined the maximum tags... 167s INFO @ 15 Nov 2024 20:11:06: [41 MB] #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) 167s INFO @ 15 Nov 2024 20:11:06: [41 MB] #1 tags after filtering in treatment: 11628 167s INFO @ 15 Nov 2024 20:11:06: [41 MB] #1 Redundant rate of treatment: 0.00 167s INFO @ 15 Nov 2024 20:11:06: [41 MB] #1 finished! 167s INFO @ 15 Nov 2024 20:11:06: [41 MB] #2 Build Peak Model... 167s INFO @ 15 Nov 2024 20:11:06: [41 MB] #2 Skipped... 167s INFO @ 15 Nov 2024 20:11:06: [41 MB] #2 Use 200 as fragment length 167s INFO @ 15 Nov 2024 20:11:06: [41 MB] #3 Call peaks... 167s INFO @ 15 Nov 2024 20:11:06: [42 MB] #3 Pre-compute pvalue-qvalue table... 167s INFO @ 15 Nov 2024 20:11:06: [44 MB] #3 In the peak calling step, the following will be performed simultaneously: 167s INFO @ 15 Nov 2024 20:11:06: [44 MB] #3 Write bedGraph files for treatment pileup (after scaling if necessary)... test_treat_pileup.bdg 167s INFO @ 15 Nov 2024 20:11:06: [44 MB] #3 Write bedGraph files for control lambda (after scaling if necessary)... test_control_lambda.bdg 167s INFO @ 15 Nov 2024 20:11:06: [44 MB] #3 Pileup will be based on sequencing depth in treatment. 167s INFO @ 15 Nov 2024 20:11:06: [44 MB] #3 Call peaks for each chromosome... 167s INFO @ 15 Nov 2024 20:11:06: [44 MB] #4 Write output xls file... test_peaks.xls 167s INFO @ 15 Nov 2024 20:11:06: [44 MB] #4 Write peak in narrowPeak format file... test_peaks.narrowPeak 167s INFO @ 15 Nov 2024 20:11:06: [44 MB] #4 Write summits bed file... test_summits.bed 167s INFO @ 15 Nov 2024 20:11:06: [44 MB] Done! 167s + macs3 callpeak -t gerp.chr1.bed --nomodel --broad -g hs --broad-cutoff 0.1 167s INFO @ 15 Nov 2024 20:11:06: [39 MB] 167s # Command line: callpeak -t gerp.chr1.bed --nomodel --broad -g hs --broad-cutoff 0.1 167s # ARGUMENTS LIST: 167s # name = NA 167s # format = AUTO 167s # ChIP-seq file = ['gerp.chr1.bed'] 167s # control file = None 167s # effective genome size = 2.91e+09 167s # band width = 300 167s # model fold = [5, 50] 167s # qvalue cutoff for narrow/strong regions = 5.00e-02 167s # qvalue cutoff for broad/weak regions = 1.00e-01 167s # The maximum gap between significant sites is assigned as the read length/tag size. 167s # The minimum length of peaks is assigned as the predicted fragment length "d". 167s # Larger dataset will be scaled towards smaller dataset. 167s # Range for calculating regional lambda is: 10000 bps 167s # Broad region calling is on 167s # Paired-End mode is off 167s 167s INFO @ 15 Nov 2024 20:11:06: [39 MB] #1 read tag files... 167s INFO @ 15 Nov 2024 20:11:06: [39 MB] #1 read treatment tags... 167s INFO @ 15 Nov 2024 20:11:06: [39 MB] Detected format is: BED 167s INFO @ 15 Nov 2024 20:11:06: [50 MB] #1 tag size is determined as 181 bps 167s INFO @ 15 Nov 2024 20:11:06: [50 MB] #1 tag size = 181.0 167s INFO @ 15 Nov 2024 20:11:06: [50 MB] #1 total tags in treatment: 88292 167s INFO @ 15 Nov 2024 20:11:06: [50 MB] #1 user defined the maximum tags... 167s INFO @ 15 Nov 2024 20:11:06: [50 MB] #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) 167s INFO @ 15 Nov 2024 20:11:06: [50 MB] #1 tags after filtering in treatment: 88292 167s INFO @ 15 Nov 2024 20:11:06: [50 MB] #1 Redundant rate of treatment: 0.00 167s INFO @ 15 Nov 2024 20:11:06: [50 MB] #1 finished! 167s INFO @ 15 Nov 2024 20:11:06: [50 MB] #2 Build Peak Model... 167s INFO @ 15 Nov 2024 20:11:06: [50 MB] #2 Skipped... 167s INFO @ 15 Nov 2024 20:11:06: [50 MB] #2 Use 200 as fragment length 167s INFO @ 15 Nov 2024 20:11:06: [50 MB] #3 Call peaks... 167s INFO @ 15 Nov 2024 20:11:06: [50 MB] #3 Call broad peaks with given level1 -log10qvalue cutoff and level2: 1.301030, 1.000000... 167s INFO @ 15 Nov 2024 20:11:06: [50 MB] #3 Pre-compute pvalue-qvalue table... 167s INFO @ 15 Nov 2024 20:11:06: [68 MB] #3 Call peaks for each chromosome... 167s INFO @ 15 Nov 2024 20:11:06: [70 MB] #4 Write output xls file... NA_peaks.xls 167s INFO @ 15 Nov 2024 20:11:06: [70 MB] #4 Write broad peak in broadPeak format file... NA_peaks.broadPeak 167s INFO @ 15 Nov 2024 20:11:06: [70 MB] #4 Write broad peak in bed12/gappedPeak format file... NA_peaks.gappedPeak 167s INFO @ 15 Nov 2024 20:11:06: [70 MB] Done! 168s autopkgtest [20:11:07]: test run-unit-test: -----------------------] 168s autopkgtest [20:11:07]: test run-unit-test: - - - - - - - - - - results - - - - - - - - - - 168s run-unit-test PASS 168s autopkgtest [20:11:07]: @@@@@@@@@@@@@@@@@@@@ summary 168s run-unit-test PASS 180s virt: nova [W] Using flock in prodstack6-s390x 180s virt: flock: timeout while waiting to get lock 180s virt: Creating nova instance adt-plucky-s390x-macs-20241115-200819-juju-7f2275-prod-proposed-migration-environment-2-44f3e840-b036-482e-8c02-108558035bc5 from image adt/ubuntu-plucky-s390x-server-20241115.img (UUID c94000c6-8e8d-4693-8d37-fa9d34cd2414)...