0s autopkgtest [11:48:08]: starting date and time: 2024-11-13 11:48:08+0000 0s autopkgtest [11:48:08]: git checkout: 6f3be7a8 Fix armhf LXD image generation for plucky 0s autopkgtest [11:48:08]: host juju-7f2275-prod-proposed-migration-environment-15; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.c6hl07fq/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:python3-defaults,src:python3-stdlib-extensions --apt-upgrade macs --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 '--env=ADT_TEST_TRIGGERS=python3-defaults/3.12.7-1 python3-stdlib-extensions/3.12.7-1' -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest-s390x --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-15@bos03-s390x-12.secgroup --name adt-plucky-s390x-macs-20241113-114808-juju-7f2275-prod-proposed-migration-environment-15-52a3728b-f15a-47b5-ad61-e88a9100b362 --image adt/ubuntu-plucky-s390x-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-15 --net-id=net_prod-proposed-migration-s390x -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,keyserver.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/ 404s autopkgtest [11:54:52]: testbed dpkg architecture: s390x 404s autopkgtest [11:54:52]: testbed apt version: 2.9.8 404s autopkgtest [11:54:52]: @@@@@@@@@@@@@@@@@@@@ test bed setup 405s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease [73.9 kB] 405s Get:2 http://ftpmaster.internal/ubuntu plucky-proposed/restricted Sources [7016 B] 405s Get:3 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse Sources [15.3 kB] 405s Get:4 http://ftpmaster.internal/ubuntu plucky-proposed/universe Sources [849 kB] 405s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/main Sources [76.4 kB] 405s Get:6 http://ftpmaster.internal/ubuntu plucky-proposed/main s390x Packages [85.8 kB] 405s Get:7 http://ftpmaster.internal/ubuntu plucky-proposed/universe s390x Packages [565 kB] 405s Get:8 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse s390x Packages [16.6 kB] 405s Fetched 1689 kB in 1s (2182 kB/s) 405s Reading package lists... 407s Reading package lists... 407s Building dependency tree... 407s Reading state information... 407s Calculating upgrade... 408s The following NEW packages will be installed: 408s python3.13-gdbm 408s The following packages will be upgraded: 408s libgpgme11t64 libpython3-stdlib python3 python3-gdbm python3-minimal 408s 5 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. 408s Need to get 252 kB of archives. 408s After this operation, 98.3 kB of additional disk space will be used. 408s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed/main s390x python3-minimal s390x 3.12.7-1 [27.4 kB] 408s Get:2 http://ftpmaster.internal/ubuntu plucky-proposed/main s390x python3 s390x 3.12.7-1 [24.0 kB] 408s Get:3 http://ftpmaster.internal/ubuntu plucky-proposed/main s390x libpython3-stdlib s390x 3.12.7-1 [10.0 kB] 408s Get:4 http://ftpmaster.internal/ubuntu plucky/main s390x python3.13-gdbm s390x 3.13.0-2 [31.0 kB] 408s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/main s390x python3-gdbm s390x 3.12.7-1 [8642 B] 408s Get:6 http://ftpmaster.internal/ubuntu plucky/main s390x libgpgme11t64 s390x 1.23.2-5ubuntu4 [151 kB] 408s Fetched 252 kB in 0s (616 kB/s) 408s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 55510 files and directories currently installed.) 408s Preparing to unpack .../python3-minimal_3.12.7-1_s390x.deb ... 408s Unpacking python3-minimal (3.12.7-1) over (3.12.6-0ubuntu1) ... 408s Setting up python3-minimal (3.12.7-1) ... 408s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 55510 files and directories currently installed.) 408s Preparing to unpack .../python3_3.12.7-1_s390x.deb ... 408s Unpacking python3 (3.12.7-1) over (3.12.6-0ubuntu1) ... 408s Preparing to unpack .../libpython3-stdlib_3.12.7-1_s390x.deb ... 408s Unpacking libpython3-stdlib:s390x (3.12.7-1) over (3.12.6-0ubuntu1) ... 408s Selecting previously unselected package python3.13-gdbm. 408s Preparing to unpack .../python3.13-gdbm_3.13.0-2_s390x.deb ... 408s Unpacking python3.13-gdbm (3.13.0-2) ... 409s Preparing to unpack .../python3-gdbm_3.12.7-1_s390x.deb ... 409s Unpacking python3-gdbm:s390x (3.12.7-1) over (3.12.6-1ubuntu1) ... 409s Preparing to unpack .../libgpgme11t64_1.23.2-5ubuntu4_s390x.deb ... 409s Unpacking libgpgme11t64:s390x (1.23.2-5ubuntu4) over (1.18.0-4.1ubuntu4) ... 409s Setting up libgpgme11t64:s390x (1.23.2-5ubuntu4) ... 409s Setting up python3.13-gdbm (3.13.0-2) ... 409s Setting up libpython3-stdlib:s390x (3.12.7-1) ... 409s Setting up python3 (3.12.7-1) ... 409s Setting up python3-gdbm:s390x (3.12.7-1) ... 409s Processing triggers for man-db (2.12.1-3) ... 409s Processing triggers for libc-bin (2.40-1ubuntu3) ... 409s Reading package lists... 409s Building dependency tree... 409s Reading state information... 410s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 410s Hit:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease 410s Hit:2 http://ftpmaster.internal/ubuntu plucky InRelease 410s Hit:3 http://ftpmaster.internal/ubuntu plucky-updates InRelease 410s Hit:4 http://ftpmaster.internal/ubuntu plucky-security InRelease 411s Reading package lists... 411s Reading package lists... 411s Building dependency tree... 411s Reading state information... 411s Calculating upgrade... 411s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 411s Reading package lists... 411s Building dependency tree... 411s Reading state information... 411s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 414s autopkgtest [11:55:02]: testbed running kernel: Linux 6.11.0-8-generic #8-Ubuntu SMP Mon Sep 16 12:49:35 UTC 2024 414s autopkgtest [11:55:02]: @@@@@@@@@@@@@@@@@@@@ apt-source macs 423s Get:1 http://ftpmaster.internal/ubuntu plucky/universe macs 3.0.2-1 (dsc) [2152 B] 423s Get:2 http://ftpmaster.internal/ubuntu plucky/universe macs 3.0.2-1 (tar) [197 MB] 423s Get:3 http://ftpmaster.internal/ubuntu plucky/universe macs 3.0.2-1 (diff) [1268 kB] 423s gpgv: Signature made Sat Sep 7 23:10:03 2024 UTC 423s gpgv: using RSA key 724D609337113C710550D7473C26763F6C67E6E2 423s gpgv: Can't check signature: No public key 423s dpkg-source: warning: cannot verify inline signature for ./macs_3.0.2-1.dsc: no acceptable signature found 425s autopkgtest [11:55:13]: testing package macs version 3.0.2-1 426s autopkgtest [11:55:14]: build not needed 442s autopkgtest [11:55:30]: test run-unit-test: preparing testbed 450s Reading package lists... 450s Building dependency tree... 450s Reading state information... 450s Starting pkgProblemResolver with broken count: 0 450s Starting 2 pkgProblemResolver with broken count: 0 450s Done 450s The following additional packages will be installed: 450s libblas3 libgfortran5 libgomp1 liblapack3 liblbfgsb0 macs python3-cykhash 450s python3-decorator python3-hmmlearn python3-joblib python3-numpy 450s python3-scipy python3-sklearn python3-sklearn-lib python3-threadpoolctl 450s Suggested packages: 450s python-joblib-doc gcc gfortran python-numpy-doc python3-dev python3-pytest 450s python-scipy-doc python3-dap python-sklearn-doc ipython3 450s Recommended packages: 450s python3-pytest python3-simplejson python3-psutil g++ | c++-compiler 450s python3-pil python3-matplotlib 450s The following NEW packages will be installed: 450s autopkgtest-satdep libblas3 libgfortran5 libgomp1 liblapack3 liblbfgsb0 macs 450s python3-cykhash python3-decorator python3-hmmlearn python3-joblib 450s python3-numpy python3-scipy python3-sklearn python3-sklearn-lib 450s python3-threadpoolctl 450s 0 upgraded, 16 newly installed, 0 to remove and 0 not upgraded. 450s Need to get 36.0 MB/36.0 MB of archives. 450s After this operation, 148 MB of additional disk space will be used. 450s Get:1 /tmp/autopkgtest.EzAG1N/1-autopkgtest-satdep.deb autopkgtest-satdep s390x 0 [700 B] 451s Get:2 http://ftpmaster.internal/ubuntu plucky/main s390x libblas3 s390x 3.12.0-3build2 [238 kB] 451s Get:3 http://ftpmaster.internal/ubuntu plucky/main s390x libgfortran5 s390x 14.2.0-8ubuntu1 [587 kB] 451s Get:4 http://ftpmaster.internal/ubuntu plucky/main s390x libgomp1 s390x 14.2.0-8ubuntu1 [151 kB] 451s Get:5 http://ftpmaster.internal/ubuntu plucky/main s390x liblapack3 s390x 3.12.0-3build2 [2953 kB] 451s Get:6 http://ftpmaster.internal/ubuntu plucky/universe s390x liblbfgsb0 s390x 3.0+dfsg.4-1build1 [32.4 kB] 451s Get:7 http://ftpmaster.internal/ubuntu plucky/main s390x python3-numpy s390x 1:1.26.4+ds-11build1 [4113 kB] 451s Get:8 http://ftpmaster.internal/ubuntu plucky/universe s390x python3-cykhash s390x 2.0.0-3build1 [504 kB] 451s Get:9 http://ftpmaster.internal/ubuntu plucky/main s390x python3-decorator all 5.1.1-5 [10.1 kB] 451s Get:10 http://ftpmaster.internal/ubuntu plucky/universe s390x python3-scipy s390x 1.13.1-5 [17.5 MB] 452s Get:11 http://ftpmaster.internal/ubuntu plucky/universe s390x python3-joblib all 1.3.2-5 [206 kB] 452s Get:12 http://ftpmaster.internal/ubuntu plucky/universe s390x python3-threadpoolctl all 3.1.0-1 [21.3 kB] 452s Get:13 http://ftpmaster.internal/ubuntu plucky/universe s390x python3-sklearn-lib s390x 1.4.2+dfsg-6 [4036 kB] 452s Get:14 http://ftpmaster.internal/ubuntu plucky/universe s390x python3-sklearn all 1.4.2+dfsg-6 [2257 kB] 452s Get:15 http://ftpmaster.internal/ubuntu plucky/universe s390x python3-hmmlearn s390x 0.3.2-2 [126 kB] 452s Get:16 http://ftpmaster.internal/ubuntu plucky/universe s390x macs s390x 3.0.2-1 [3271 kB] 452s Fetched 36.0 MB in 2s (22.4 MB/s) 452s Selecting previously unselected package libblas3:s390x. 452s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 55517 files and directories currently installed.) 452s Preparing to unpack .../00-libblas3_3.12.0-3build2_s390x.deb ... 452s Unpacking libblas3:s390x (3.12.0-3build2) ... 452s Selecting previously unselected package libgfortran5:s390x. 452s Preparing to unpack .../01-libgfortran5_14.2.0-8ubuntu1_s390x.deb ... 452s Unpacking libgfortran5:s390x (14.2.0-8ubuntu1) ... 452s Selecting previously unselected package libgomp1:s390x. 452s Preparing to unpack .../02-libgomp1_14.2.0-8ubuntu1_s390x.deb ... 452s Unpacking libgomp1:s390x (14.2.0-8ubuntu1) ... 452s Selecting previously unselected package liblapack3:s390x. 452s Preparing to unpack .../03-liblapack3_3.12.0-3build2_s390x.deb ... 452s Unpacking liblapack3:s390x (3.12.0-3build2) ... 452s Selecting previously unselected package liblbfgsb0:s390x. 452s Preparing to unpack .../04-liblbfgsb0_3.0+dfsg.4-1build1_s390x.deb ... 452s Unpacking liblbfgsb0:s390x (3.0+dfsg.4-1build1) ... 452s Selecting previously unselected package python3-numpy. 452s Preparing to unpack .../05-python3-numpy_1%3a1.26.4+ds-11build1_s390x.deb ... 452s Unpacking python3-numpy (1:1.26.4+ds-11build1) ... 452s Selecting previously unselected package python3-cykhash. 452s Preparing to unpack .../06-python3-cykhash_2.0.0-3build1_s390x.deb ... 452s Unpacking python3-cykhash (2.0.0-3build1) ... 452s Selecting previously unselected package python3-decorator. 452s Preparing to unpack .../07-python3-decorator_5.1.1-5_all.deb ... 452s Unpacking python3-decorator (5.1.1-5) ... 452s Selecting previously unselected package python3-scipy. 452s Preparing to unpack .../08-python3-scipy_1.13.1-5_s390x.deb ... 452s Unpacking python3-scipy (1.13.1-5) ... 453s Selecting previously unselected package python3-joblib. 453s Preparing to unpack .../09-python3-joblib_1.3.2-5_all.deb ... 453s Unpacking python3-joblib (1.3.2-5) ... 453s Selecting previously unselected package python3-threadpoolctl. 453s Preparing to unpack .../10-python3-threadpoolctl_3.1.0-1_all.deb ... 453s Unpacking python3-threadpoolctl (3.1.0-1) ... 453s Selecting previously unselected package python3-sklearn-lib:s390x. 453s Preparing to unpack .../11-python3-sklearn-lib_1.4.2+dfsg-6_s390x.deb ... 453s Unpacking python3-sklearn-lib:s390x (1.4.2+dfsg-6) ... 453s Selecting previously unselected package python3-sklearn. 453s Preparing to unpack .../12-python3-sklearn_1.4.2+dfsg-6_all.deb ... 453s Unpacking python3-sklearn (1.4.2+dfsg-6) ... 453s Selecting previously unselected package python3-hmmlearn. 453s Preparing to unpack .../13-python3-hmmlearn_0.3.2-2_s390x.deb ... 453s Unpacking python3-hmmlearn (0.3.2-2) ... 453s Selecting previously unselected package macs. 453s Preparing to unpack .../14-macs_3.0.2-1_s390x.deb ... 453s Unpacking macs (3.0.2-1) ... 453s Selecting previously unselected package autopkgtest-satdep. 453s Preparing to unpack .../15-1-autopkgtest-satdep.deb ... 453s Unpacking autopkgtest-satdep (0) ... 453s Setting up python3-joblib (1.3.2-5) ... 453s Setting up python3-threadpoolctl (3.1.0-1) ... 453s Setting up libgomp1:s390x (14.2.0-8ubuntu1) ... 453s Setting up python3-cykhash (2.0.0-3build1) ... 453s Setting up python3-decorator (5.1.1-5) ... 453s Setting up libblas3:s390x (3.12.0-3build2) ... 453s update-alternatives: using /usr/lib/s390x-linux-gnu/blas/libblas.so.3 to provide /usr/lib/s390x-linux-gnu/libblas.so.3 (libblas.so.3-s390x-linux-gnu) in auto mode 453s Setting up libgfortran5:s390x (14.2.0-8ubuntu1) ... 453s Setting up liblapack3:s390x (3.12.0-3build2) ... 453s update-alternatives: using /usr/lib/s390x-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/s390x-linux-gnu/liblapack.so.3 (liblapack.so.3-s390x-linux-gnu) in auto mode 453s Setting up python3-numpy (1:1.26.4+ds-11build1) ... 455s Setting up liblbfgsb0:s390x (3.0+dfsg.4-1build1) ... 455s Setting up python3-scipy (1.13.1-5) ... 459s Setting up python3-sklearn-lib:s390x (1.4.2+dfsg-6) ... 459s Setting up python3-sklearn (1.4.2+dfsg-6) ... 460s Setting up python3-hmmlearn (0.3.2-2) ... 461s Setting up macs (3.0.2-1) ... 461s Setting up autopkgtest-satdep (0) ... 461s Processing triggers for man-db (2.12.1-3) ... 461s Processing triggers for libc-bin (2.40-1ubuntu3) ... 463s (Reading database ... 59075 files and directories currently installed.) 463s Removing autopkgtest-satdep (0) ... 463s autopkgtest [11:55:51]: test run-unit-test: [----------------------- 463s + pkg=macs 463s + '[' /tmp/autopkgtest.EzAG1N/autopkgtest_tmp = '' ']' 463s + cp -a /usr/share/doc/macs/examples/aluY.chr1.bed.gz /usr/share/doc/macs/examples/gerp.chr1.bed.gz /tmp/autopkgtest.EzAG1N/autopkgtest_tmp 463s + cd /tmp/autopkgtest.EzAG1N/autopkgtest_tmp 463s + gunzip aluY.chr1.bed.gz gerp.chr1.bed.gz 463s + macs3 callpeak -t aluY.chr1.bed --nomodel -g hs -n test -B -q 0.01 463s INFO @ 13 Nov 2024 11:55:51: [39 MB] 463s # Command line: callpeak -t aluY.chr1.bed --nomodel -g hs -n test -B -q 0.01 463s # ARGUMENTS LIST: 463s # name = test 463s # format = AUTO 463s # ChIP-seq file = ['aluY.chr1.bed'] 463s # control file = None 463s # effective genome size = 2.91e+09 463s # band width = 300 463s # model fold = [5, 50] 463s # qvalue cutoff = 1.00e-02 463s # The maximum gap between significant sites is assigned as the read length/tag size. 463s # The minimum length of peaks is assigned as the predicted fragment length "d". 463s # Larger dataset will be scaled towards smaller dataset. 463s # Range for calculating regional lambda is: 10000 bps 463s # Broad region calling is off 463s # Paired-End mode is off 463s 463s INFO @ 13 Nov 2024 11:55:51: [39 MB] #1 read tag files... 463s INFO @ 13 Nov 2024 11:55:51: [39 MB] #1 read treatment tags... 463s INFO @ 13 Nov 2024 11:55:51: [39 MB] Detected format is: BED 463s INFO @ 13 Nov 2024 11:55:51: [41 MB] #1 tag size is determined as 294 bps 463s INFO @ 13 Nov 2024 11:55:51: [41 MB] #1 tag size = 294.0 463s INFO @ 13 Nov 2024 11:55:51: [41 MB] #1 total tags in treatment: 11628 463s INFO @ 13 Nov 2024 11:55:51: [41 MB] #1 user defined the maximum tags... 463s INFO @ 13 Nov 2024 11:55:51: [41 MB] #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) 463s INFO @ 13 Nov 2024 11:55:51: [41 MB] #1 tags after filtering in treatment: 11628 463s INFO @ 13 Nov 2024 11:55:51: [41 MB] #1 Redundant rate of treatment: 0.00 463s INFO @ 13 Nov 2024 11:55:51: [41 MB] #1 finished! 463s INFO @ 13 Nov 2024 11:55:51: [41 MB] #2 Build Peak Model... 463s INFO @ 13 Nov 2024 11:55:51: [41 MB] #2 Skipped... 463s INFO @ 13 Nov 2024 11:55:51: [41 MB] #2 Use 200 as fragment length 463s INFO @ 13 Nov 2024 11:55:51: [41 MB] #3 Call peaks... 463s INFO @ 13 Nov 2024 11:55:51: [42 MB] #3 Pre-compute pvalue-qvalue table... 463s INFO @ 13 Nov 2024 11:55:51: [44 MB] #3 In the peak calling step, the following will be performed simultaneously: 463s INFO @ 13 Nov 2024 11:55:51: [44 MB] #3 Write bedGraph files for treatment pileup (after scaling if necessary)... test_treat_pileup.bdg 463s INFO @ 13 Nov 2024 11:55:51: [44 MB] #3 Write bedGraph files for control lambda (after scaling if necessary)... test_control_lambda.bdg 463s INFO @ 13 Nov 2024 11:55:51: [44 MB] #3 Pileup will be based on sequencing depth in treatment. 463s INFO @ 13 Nov 2024 11:55:51: [44 MB] #3 Call peaks for each chromosome... 463s INFO @ 13 Nov 2024 11:55:51: [44 MB] #4 Write output xls file... test_peaks.xls 463s INFO @ 13 Nov 2024 11:55:51: [44 MB] #4 Write peak in narrowPeak format file... test_peaks.narrowPeak 463s INFO @ 13 Nov 2024 11:55:51: [44 MB] #4 Write summits bed file... test_summits.bed 463s INFO @ 13 Nov 2024 11:55:51: [44 MB] Done! 463s + macs3 callpeak -t gerp.chr1.bed --nomodel --broad -g hs --broad-cutoff 0.1 464s INFO @ 13 Nov 2024 11:55:51: [39 MB] 464s # Command line: callpeak -t gerp.chr1.bed --nomodel --broad -g hs --broad-cutoff 0.1 464s # ARGUMENTS LIST: 464s # name = NA 464s # format = AUTO 464s # ChIP-seq file = ['gerp.chr1.bed'] 464s # control file = None 464s # effective genome size = 2.91e+09 464s # band width = 300 464s # model fold = [5, 50] 464s # qvalue cutoff for narrow/strong regions = 5.00e-02 464s # qvalue cutoff for broad/weak regions = 1.00e-01 464s # The maximum gap between significant sites is assigned as the read length/tag size. 464s # The minimum length of peaks is assigned as the predicted fragment length "d". 464s # Larger dataset will be scaled towards smaller dataset. 464s # Range for calculating regional lambda is: 10000 bps 464s # Broad region calling is on 464s # Paired-End mode is off 464s 464s INFO @ 13 Nov 2024 11:55:51: [39 MB] #1 read tag files... 464s INFO @ 13 Nov 2024 11:55:51: [39 MB] #1 read treatment tags... 464s INFO @ 13 Nov 2024 11:55:51: [39 MB] Detected format is: BED 464s INFO @ 13 Nov 2024 11:55:52: [50 MB] #1 tag size is determined as 181 bps 464s INFO @ 13 Nov 2024 11:55:52: [50 MB] #1 tag size = 181.0 464s INFO @ 13 Nov 2024 11:55:52: [50 MB] #1 total tags in treatment: 88292 464s INFO @ 13 Nov 2024 11:55:52: [50 MB] #1 user defined the maximum tags... 464s INFO @ 13 Nov 2024 11:55:52: [50 MB] #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) 464s INFO @ 13 Nov 2024 11:55:52: [50 MB] #1 tags after filtering in treatment: 88292 464s INFO @ 13 Nov 2024 11:55:52: [50 MB] #1 Redundant rate of treatment: 0.00 464s INFO @ 13 Nov 2024 11:55:52: [50 MB] #1 finished! 464s INFO @ 13 Nov 2024 11:55:52: [50 MB] #2 Build Peak Model... 464s INFO @ 13 Nov 2024 11:55:52: [50 MB] #2 Skipped... 464s INFO @ 13 Nov 2024 11:55:52: [50 MB] #2 Use 200 as fragment length 464s INFO @ 13 Nov 2024 11:55:52: [50 MB] #3 Call peaks... 464s INFO @ 13 Nov 2024 11:55:52: [50 MB] #3 Call broad peaks with given level1 -log10qvalue cutoff and level2: 1.301030, 1.000000... 464s INFO @ 13 Nov 2024 11:55:52: [50 MB] #3 Pre-compute pvalue-qvalue table... 464s INFO @ 13 Nov 2024 11:55:52: [68 MB] #3 Call peaks for each chromosome... 464s INFO @ 13 Nov 2024 11:55:52: [70 MB] #4 Write output xls file... NA_peaks.xls 464s INFO @ 13 Nov 2024 11:55:52: [70 MB] #4 Write broad peak in broadPeak format file... NA_peaks.broadPeak 464s INFO @ 13 Nov 2024 11:55:52: [70 MB] #4 Write broad peak in bed12/gappedPeak format file... NA_peaks.gappedPeak 464s INFO @ 13 Nov 2024 11:55:52: [70 MB] Done! 464s autopkgtest [11:55:52]: test run-unit-test: -----------------------] 465s autopkgtest [11:55:53]: test run-unit-test: - - - - - - - - - - results - - - - - - - - - - 465s run-unit-test PASS 465s autopkgtest [11:55:53]: @@@@@@@@@@@@@@@@@@@@ summary 465s run-unit-test PASS 476s nova [W] Using flock in prodstack6-s390x 476s flock: timeout while waiting to get lock 476s Creating nova instance adt-plucky-s390x-macs-20241113-114808-juju-7f2275-prod-proposed-migration-environment-15-52a3728b-f15a-47b5-ad61-e88a9100b362 from image adt/ubuntu-plucky-s390x-server-20241113.img (UUID e740277e-1f72-40ae-bfbe-46030537c71c)... 476s nova [W] nova quota exceeded (attempt #0)