0s autopkgtest [15:50:45]: starting date and time: 2024-11-02 15:50:45+0000
  0s autopkgtest [15:50:45]: git checkout: 6f3be7a8 Fix armhf LXD image generation for plucky
  0s autopkgtest [15:50:45]: host juju-7f2275-prod-proposed-migration-environment-15; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.mi11qh7k/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:htslib --apt-upgrade libbio-db-hts-perl --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=htslib/1.20+ds-2 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest-s390x --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-15@bos03-s390x-13.secgroup --name adt-plucky-s390x-libbio-db-hts-perl-20241102-152630-juju-7f2275-prod-proposed-migration-environment-15-af4ae234-54af-4d72-a36c-a31650781462 --image adt/ubuntu-plucky-s390x-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-15 --net-id=net_prod-proposed-migration-s390x -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,keyserver.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/
 96s autopkgtest [15:52:21]: testbed dpkg architecture: s390x
 96s autopkgtest [15:52:21]: testbed apt version: 2.9.8
 96s autopkgtest [15:52:21]: @@@@@@@@@@@@@@@@@@@@ test bed setup
 97s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease [73.9 kB]
 97s Get:2 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse Sources [40.4 kB]
 97s Get:3 http://ftpmaster.internal/ubuntu plucky-proposed/restricted Sources [7016 B]
 97s Get:4 http://ftpmaster.internal/ubuntu plucky-proposed/main Sources [172 kB]
 97s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/universe Sources [2555 kB]
 98s Get:6 http://ftpmaster.internal/ubuntu plucky-proposed/main s390x Packages [212 kB]
 98s Get:7 http://ftpmaster.internal/ubuntu plucky-proposed/universe s390x Packages [1819 kB]
 98s Get:8 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse s390x Packages [33.3 kB]
 98s Fetched 4913 kB in 1s (3996 kB/s)
 98s Reading package lists...
100s Reading package lists...
101s Building dependency tree...
101s Reading state information...
101s Calculating upgrade...
101s The following packages will be upgraded:
101s   libblockdev-crypto3 libblockdev-fs3 libblockdev-loop3 libblockdev-mdraid3
101s   libblockdev-nvme3 libblockdev-part3 libblockdev-swap3 libblockdev-utils3
101s   libblockdev3 libevdev2 libftdi1-2 libinih1 libpipeline1 nano
101s   python3-lazr.uri
101s 15 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
101s Need to get 611 kB of archives.
101s After this operation, 52.2 kB of additional disk space will be used.
101s Get:1 http://ftpmaster.internal/ubuntu plucky/main s390x libevdev2 s390x 1.13.3+dfsg-1 [35.9 kB]
101s Get:2 http://ftpmaster.internal/ubuntu plucky/main s390x libpipeline1 s390x 1.5.8-1 [32.5 kB]
101s Get:3 http://ftpmaster.internal/ubuntu plucky/main s390x nano s390x 8.2-1 [298 kB]
101s Get:4 http://ftpmaster.internal/ubuntu plucky/main s390x libblockdev-utils3 s390x 3.2.0-2 [19.3 kB]
101s Get:5 http://ftpmaster.internal/ubuntu plucky/main s390x libblockdev-crypto3 s390x 3.2.0-2 [23.7 kB]
101s Get:6 http://ftpmaster.internal/ubuntu plucky/main s390x libblockdev-fs3 s390x 3.2.0-2 [36.1 kB]
101s Get:7 http://ftpmaster.internal/ubuntu plucky/main s390x libblockdev-loop3 s390x 3.2.0-2 [7092 B]
101s Get:8 http://ftpmaster.internal/ubuntu plucky/main s390x libblockdev-mdraid3 s390x 3.2.0-2 [12.8 kB]
101s Get:9 http://ftpmaster.internal/ubuntu plucky/main s390x libblockdev-nvme3 s390x 3.2.0-2 [18.1 kB]
101s Get:10 http://ftpmaster.internal/ubuntu plucky/main s390x libblockdev-part3 s390x 3.2.0-2 [15.3 kB]
101s Get:11 http://ftpmaster.internal/ubuntu plucky/main s390x libblockdev-swap3 s390x 3.2.0-2 [7704 B]
101s Get:12 http://ftpmaster.internal/ubuntu plucky/main s390x libblockdev3 s390x 3.2.0-2 [53.8 kB]
101s Get:13 http://ftpmaster.internal/ubuntu plucky/main s390x libftdi1-2 s390x 1.5-7 [29.2 kB]
101s Get:14 http://ftpmaster.internal/ubuntu plucky/main s390x libinih1 s390x 58-1ubuntu1 [7602 B]
101s Get:15 http://ftpmaster.internal/ubuntu plucky/main s390x python3-lazr.uri all 1.0.6-4 [13.6 kB]
102s Fetched 611 kB in 1s (1016 kB/s)
102s (Reading database ... 
(Reading database ... 5%
(Reading database ... 10%
(Reading database ... 15%
(Reading database ... 20%
(Reading database ... 25%
(Reading database ... 30%
(Reading database ... 35%
(Reading database ... 40%
(Reading database ... 45%
(Reading database ... 50%
(Reading database ... 55%
(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 55483 files and directories currently installed.)
102s Preparing to unpack .../00-libevdev2_1.13.3+dfsg-1_s390x.deb ...
102s Unpacking libevdev2:s390x (1.13.3+dfsg-1) over (1.13.2+dfsg-1) ...
102s Preparing to unpack .../01-libpipeline1_1.5.8-1_s390x.deb ...
102s Unpacking libpipeline1:s390x (1.5.8-1) over (1.5.7-2) ...
102s Preparing to unpack .../02-nano_8.2-1_s390x.deb ...
102s Unpacking nano (8.2-1) over (8.1-1) ...
102s Preparing to unpack .../03-libblockdev-utils3_3.2.0-2_s390x.deb ...
102s Unpacking libblockdev-utils3:s390x (3.2.0-2) over (3.1.1-2) ...
102s Preparing to unpack .../04-libblockdev-crypto3_3.2.0-2_s390x.deb ...
102s Unpacking libblockdev-crypto3:s390x (3.2.0-2) over (3.1.1-2) ...
102s Preparing to unpack .../05-libblockdev-fs3_3.2.0-2_s390x.deb ...
102s Unpacking libblockdev-fs3:s390x (3.2.0-2) over (3.1.1-2) ...
102s Preparing to unpack .../06-libblockdev-loop3_3.2.0-2_s390x.deb ...
102s Unpacking libblockdev-loop3:s390x (3.2.0-2) over (3.1.1-2) ...
102s Preparing to unpack .../07-libblockdev-mdraid3_3.2.0-2_s390x.deb ...
102s Unpacking libblockdev-mdraid3:s390x (3.2.0-2) over (3.1.1-2) ...
102s Preparing to unpack .../08-libblockdev-nvme3_3.2.0-2_s390x.deb ...
102s Unpacking libblockdev-nvme3:s390x (3.2.0-2) over (3.1.1-2) ...
102s Preparing to unpack .../09-libblockdev-part3_3.2.0-2_s390x.deb ...
102s Unpacking libblockdev-part3:s390x (3.2.0-2) over (3.1.1-2) ...
102s Preparing to unpack .../10-libblockdev-swap3_3.2.0-2_s390x.deb ...
102s Unpacking libblockdev-swap3:s390x (3.2.0-2) over (3.1.1-2) ...
102s Preparing to unpack .../11-libblockdev3_3.2.0-2_s390x.deb ...
102s Unpacking libblockdev3:s390x (3.2.0-2) over (3.1.1-2) ...
102s Preparing to unpack .../12-libftdi1-2_1.5-7_s390x.deb ...
102s Unpacking libftdi1-2:s390x (1.5-7) over (1.5-6build5) ...
102s Preparing to unpack .../13-libinih1_58-1ubuntu1_s390x.deb ...
102s Unpacking libinih1:s390x (58-1ubuntu1) over (55-1ubuntu2) ...
102s Preparing to unpack .../14-python3-lazr.uri_1.0.6-4_all.deb ...
102s Unpacking python3-lazr.uri (1.0.6-4) over (1.0.6-3) ...
102s Setting up libpipeline1:s390x (1.5.8-1) ...
102s Setting up libinih1:s390x (58-1ubuntu1) ...
102s Setting up python3-lazr.uri (1.0.6-4) ...
102s Setting up libftdi1-2:s390x (1.5-7) ...
102s Setting up libblockdev-utils3:s390x (3.2.0-2) ...
102s Setting up libblockdev-nvme3:s390x (3.2.0-2) ...
102s Setting up nano (8.2-1) ...
102s Setting up libblockdev-fs3:s390x (3.2.0-2) ...
102s Setting up libevdev2:s390x (1.13.3+dfsg-1) ...
102s Setting up libblockdev-mdraid3:s390x (3.2.0-2) ...
102s Setting up libblockdev-crypto3:s390x (3.2.0-2) ...
102s Setting up libblockdev-swap3:s390x (3.2.0-2) ...
102s Setting up libblockdev-loop3:s390x (3.2.0-2) ...
102s Setting up libblockdev3:s390x (3.2.0-2) ...
102s Installing new version of config file /etc/libblockdev/3/conf.d/00-default.cfg ...
102s Setting up libblockdev-part3:s390x (3.2.0-2) ...
102s Processing triggers for libc-bin (2.40-1ubuntu3) ...
102s Processing triggers for man-db (2.12.1-3) ...
103s Processing triggers for install-info (7.1.1-1) ...
103s Reading package lists...
103s Building dependency tree...
103s Reading state information...
103s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
104s Hit:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease
104s Hit:2 http://ftpmaster.internal/ubuntu plucky InRelease
104s Hit:3 http://ftpmaster.internal/ubuntu plucky-updates InRelease
104s Hit:4 http://ftpmaster.internal/ubuntu plucky-security InRelease
105s Reading package lists...
105s Reading package lists...
105s Building dependency tree...
105s Reading state information...
105s Calculating upgrade...
105s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
105s Reading package lists...
105s Building dependency tree...
105s Reading state information...
105s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
108s autopkgtest [15:52:33]: testbed running kernel: Linux 6.11.0-8-generic #8-Ubuntu SMP Mon Sep 16 12:49:35 UTC 2024
108s autopkgtest [15:52:33]: @@@@@@@@@@@@@@@@@@@@ apt-source libbio-db-hts-perl
110s Get:1 http://ftpmaster.internal/ubuntu plucky/universe libbio-db-hts-perl 3.01-4build4 (dsc) [2270 B]
110s Get:2 http://ftpmaster.internal/ubuntu plucky/universe libbio-db-hts-perl 3.01-4build4 (tar) [5251 kB]
110s Get:3 http://ftpmaster.internal/ubuntu plucky/universe libbio-db-hts-perl 3.01-4build4 (diff) [4060 B]
110s gpgv: Signature made Sun Oct 20 08:30:39 2024 UTC
110s gpgv:                using RSA key 568BF22A66337CBFC9A6B9B72C83DBC8E9BD0E37
110s gpgv: Can't check signature: No public key
110s dpkg-source: warning: cannot verify inline signature for ./libbio-db-hts-perl_3.01-4build4.dsc: no acceptable signature found
110s autopkgtest [15:52:35]: testing package libbio-db-hts-perl version 3.01-4build4
110s autopkgtest [15:52:35]: build not needed
111s autopkgtest [15:52:36]: test autodep8-perl-build-deps: preparing testbed
113s Reading package lists...
113s Building dependency tree...
113s Reading state information...
113s Starting pkgProblemResolver with broken count: 0
113s Starting 2 pkgProblemResolver with broken count: 0
113s Done
113s The following additional packages will be installed:
113s   autoconf autodep8 automake autopoint autotools-dev build-essential cpp
113s   cpp-14 cpp-14-s390x-linux-gnu cpp-s390x-linux-gnu dctrl-tools debhelper
113s   debugedit dh-autoreconf dh-strip-nondeterminism dwz g++ g++-14
113s   g++-14-s390x-linux-gnu g++-s390x-linux-gnu gcc gcc-14 gcc-14-s390x-linux-gnu
113s   gcc-s390x-linux-gnu gettext intltool-debian libarchive-zip-perl libasan8
113s   libbio-db-hts-perl libbio-perl-perl libbrotli-dev libbz2-dev libcc1-0
113s   libcurl4-gnutls-dev libdata-stag-perl libdebhelper-perl libdeflate-dev
113s   libdeflate0 libevent-2.1-7t64 libextutils-pkgconfig-perl
113s   libfile-stripnondeterminism-perl libgcc-14-dev libgmp-dev libgmpxx4ldbl
113s   libgnutls-dane0t64 libgnutls-openssl27t64 libgnutls28-dev libgomp1
113s   libhts-dev libhts3t64 libhtscodecs2 libidn2-dev libio-string-perl libisl23
113s   libitm1 liblzma-dev libmodule-build-perl libmpc3 libnghttp2-dev
113s   libp11-kit-dev libpkgconf3 libpsl-dev librtmp-dev libssh2-1-dev libssl-dev
113s   libstdc++-14-dev libtasn1-6-dev libtool libubsan1 libunbound8 libzstd-dev m4
113s   nettle-dev pkg-config pkg-perl-autopkgtest pkgconf pkgconf-bin po-debconf
113s   zlib1g-dev
113s Suggested packages:
113s   autoconf-archive gnu-standards autoconf-doc cpp-doc gcc-14-locales
113s   cpp-14-doc debtags dh-make gcc-14-doc gcc-multilib manpages-dev flex bison
113s   gdb gcc-doc gdb-s390x-linux-gnu gettext-doc libasprintf-dev libgettextpo-dev
113s   bioperl libxml-sax-expatxs-perl libcurl4-doc libidn-dev libkrb5-dev
113s   libldap2-dev gmp-doc libgmp10-doc libmpfr-dev dns-root-data gnutls-bin
113s   gnutls-doc liblzma-doc libnghttp2-doc p11-kit-doc libssl-doc
113s   libstdc++-14-doc libtool-doc gfortran | fortran95-compiler gcj-jdk m4-doc
113s   libmail-box-perl
113s Recommended packages:
113s   bioperl-run | libbio-perl-run-perl libace-perl libalgorithm-munkres-perl
113s   libarray-compare-perl libbio-asn1-entrezgene-perl libclone-perl
113s   libconvert-binary-c-perl libdbd-sqlite3-perl libdbd-mysql-perl
113s   libdbd-pg-perl libgd-perl libgraph-perl libgraphviz-perl libhtml-parser-perl
113s   libhtml-tableextract-perl liblist-moreutils-perl libpostscript-perl
113s   libset-scalar-perl libsoap-lite-perl libsort-naturally-perl
113s   libspreadsheet-parseexcel-perl libspreadsheet-writeexcel-perl libsvg-perl
113s   libsvg-graph-perl liburi-perl libxml-dom-xpath-perl libxml-parser-perl
113s   libxml-sax-perl libxml-sax-writer-perl libxml-simple-perl libxml-twig-perl
113s   libxml-writer-perl libxml-libxml-perl libwww-perl bzip2-doc perl-tk
113s   libgd-gd2-perl | libgd-gd2-noxpm-perl libxml-libxslt-perl libmldbm-perl
113s   libxml-perl libarchive-cpio-perl libmodule-signature-perl libpod-readme-perl
113s   libsoftware-license-perl libtasn1-doc libltdl-dev libmail-sendmail-perl
113s The following NEW packages will be installed:
113s   autoconf autodep8 automake autopkgtest-satdep autopoint autotools-dev
113s   build-essential cpp cpp-14 cpp-14-s390x-linux-gnu cpp-s390x-linux-gnu
113s   dctrl-tools debhelper debugedit dh-autoreconf dh-strip-nondeterminism dwz
113s   g++ g++-14 g++-14-s390x-linux-gnu g++-s390x-linux-gnu gcc gcc-14
113s   gcc-14-s390x-linux-gnu gcc-s390x-linux-gnu gettext intltool-debian
113s   libarchive-zip-perl libasan8 libbio-db-hts-perl libbio-perl-perl
113s   libbrotli-dev libbz2-dev libcc1-0 libcurl4-gnutls-dev libdata-stag-perl
113s   libdebhelper-perl libdeflate-dev libdeflate0 libevent-2.1-7t64
113s   libextutils-pkgconfig-perl libfile-stripnondeterminism-perl libgcc-14-dev
113s   libgmp-dev libgmpxx4ldbl libgnutls-dane0t64 libgnutls-openssl27t64
113s   libgnutls28-dev libgomp1 libhts-dev libhts3t64 libhtscodecs2 libidn2-dev
113s   libio-string-perl libisl23 libitm1 liblzma-dev libmodule-build-perl libmpc3
113s   libnghttp2-dev libp11-kit-dev libpkgconf3 libpsl-dev librtmp-dev
113s   libssh2-1-dev libssl-dev libstdc++-14-dev libtasn1-6-dev libtool libubsan1
113s   libunbound8 libzstd-dev m4 nettle-dev pkg-config pkg-perl-autopkgtest
113s   pkgconf pkgconf-bin po-debconf zlib1g-dev
113s 0 upgraded, 80 newly installed, 0 to remove and 0 not upgraded.
113s Need to get 72.3 MB/72.3 MB of archives.
113s After this operation, 228 MB of additional disk space will be used.
113s Get:1 /tmp/autopkgtest.SaUsEa/1-autopkgtest-satdep.deb autopkgtest-satdep s390x 0 [804 B]
114s Get:2 http://ftpmaster.internal/ubuntu plucky/main s390x m4 s390x 1.4.19-4build1 [256 kB]
114s Get:3 http://ftpmaster.internal/ubuntu plucky/main s390x autoconf all 2.72-3 [382 kB]
114s Get:4 http://ftpmaster.internal/ubuntu plucky/main s390x dctrl-tools s390x 2.24-3build3 [106 kB]
114s Get:5 http://ftpmaster.internal/ubuntu plucky/main s390x autodep8 all 0.28+nmu1ubuntu1 [13.7 kB]
114s Get:6 http://ftpmaster.internal/ubuntu plucky/main s390x autotools-dev all 20220109.1 [44.9 kB]
114s Get:7 http://ftpmaster.internal/ubuntu plucky/main s390x automake all 1:1.16.5-1.3ubuntu1 [558 kB]
114s Get:8 http://ftpmaster.internal/ubuntu plucky/main s390x autopoint all 0.22.5-2 [616 kB]
114s Get:9 http://ftpmaster.internal/ubuntu plucky/main s390x libisl23 s390x 0.27-1 [704 kB]
114s Get:10 http://ftpmaster.internal/ubuntu plucky/main s390x libmpc3 s390x 1.3.1-1build2 [57.8 kB]
114s Get:11 http://ftpmaster.internal/ubuntu plucky/main s390x cpp-14-s390x-linux-gnu s390x 14.2.0-7ubuntu1 [9570 kB]
114s Get:12 http://ftpmaster.internal/ubuntu plucky/main s390x cpp-14 s390x 14.2.0-7ubuntu1 [1022 B]
114s Get:13 http://ftpmaster.internal/ubuntu plucky/main s390x cpp-s390x-linux-gnu s390x 4:14.1.0-2ubuntu1 [5452 B]
114s Get:14 http://ftpmaster.internal/ubuntu plucky/main s390x cpp s390x 4:14.1.0-2ubuntu1 [22.4 kB]
114s Get:15 http://ftpmaster.internal/ubuntu plucky/main s390x libcc1-0 s390x 14.2.0-7ubuntu1 [50.6 kB]
114s Get:16 http://ftpmaster.internal/ubuntu plucky/main s390x libgomp1 s390x 14.2.0-7ubuntu1 [151 kB]
114s Get:17 http://ftpmaster.internal/ubuntu plucky/main s390x libitm1 s390x 14.2.0-7ubuntu1 [30.9 kB]
114s Get:18 http://ftpmaster.internal/ubuntu plucky/main s390x libasan8 s390x 14.2.0-7ubuntu1 [2963 kB]
114s Get:19 http://ftpmaster.internal/ubuntu plucky/main s390x libubsan1 s390x 14.2.0-7ubuntu1 [1184 kB]
114s Get:20 http://ftpmaster.internal/ubuntu plucky/main s390x libgcc-14-dev s390x 14.2.0-7ubuntu1 [1037 kB]
114s Get:21 http://ftpmaster.internal/ubuntu plucky/main s390x gcc-14-s390x-linux-gnu s390x 14.2.0-7ubuntu1 [18.7 MB]
115s Get:22 http://ftpmaster.internal/ubuntu plucky/main s390x gcc-14 s390x 14.2.0-7ubuntu1 [515 kB]
115s Get:23 http://ftpmaster.internal/ubuntu plucky/main s390x gcc-s390x-linux-gnu s390x 4:14.1.0-2ubuntu1 [1204 B]
115s Get:24 http://ftpmaster.internal/ubuntu plucky/main s390x gcc s390x 4:14.1.0-2ubuntu1 [4996 B]
115s Get:25 http://ftpmaster.internal/ubuntu plucky/main s390x libstdc++-14-dev s390x 14.2.0-7ubuntu1 [2607 kB]
115s Get:26 http://ftpmaster.internal/ubuntu plucky/main s390x g++-14-s390x-linux-gnu s390x 14.2.0-7ubuntu1 [11.0 MB]
115s Get:27 http://ftpmaster.internal/ubuntu plucky/main s390x g++-14 s390x 14.2.0-7ubuntu1 [19.8 kB]
115s Get:28 http://ftpmaster.internal/ubuntu plucky/main s390x g++-s390x-linux-gnu s390x 4:14.1.0-2ubuntu1 [956 B]
115s Get:29 http://ftpmaster.internal/ubuntu plucky/main s390x g++ s390x 4:14.1.0-2ubuntu1 [1076 B]
115s Get:30 http://ftpmaster.internal/ubuntu plucky/main s390x build-essential s390x 12.10ubuntu1 [4930 B]
115s Get:31 http://ftpmaster.internal/ubuntu plucky/main s390x libdebhelper-perl all 13.20ubuntu1 [94.2 kB]
115s Get:32 http://ftpmaster.internal/ubuntu plucky/main s390x libtool all 2.4.7-7build1 [166 kB]
115s Get:33 http://ftpmaster.internal/ubuntu plucky/main s390x dh-autoreconf all 20 [16.1 kB]
115s Get:34 http://ftpmaster.internal/ubuntu plucky/main s390x libarchive-zip-perl all 1.68-1 [90.2 kB]
115s Get:35 http://ftpmaster.internal/ubuntu plucky/main s390x libfile-stripnondeterminism-perl all 1.14.0-1 [20.1 kB]
115s Get:36 http://ftpmaster.internal/ubuntu plucky/main s390x dh-strip-nondeterminism all 1.14.0-1 [5058 B]
115s Get:37 http://ftpmaster.internal/ubuntu plucky/main s390x debugedit s390x 1:5.1-1 [49.9 kB]
115s Get:38 http://ftpmaster.internal/ubuntu plucky/main s390x dwz s390x 0.15-1build6 [122 kB]
115s Get:39 http://ftpmaster.internal/ubuntu plucky/main s390x gettext s390x 0.22.5-2 [996 kB]
115s Get:40 http://ftpmaster.internal/ubuntu plucky/main s390x intltool-debian all 0.35.0+20060710.6 [23.2 kB]
115s Get:41 http://ftpmaster.internal/ubuntu plucky/main s390x po-debconf all 1.0.21+nmu1 [233 kB]
115s Get:42 http://ftpmaster.internal/ubuntu plucky/main s390x debhelper all 13.20ubuntu1 [893 kB]
116s Get:43 http://ftpmaster.internal/ubuntu plucky/main s390x libdeflate0 s390x 1.21-1 [46.1 kB]
116s Get:44 http://ftpmaster.internal/ubuntu plucky/universe s390x libhtscodecs2 s390x 1.6.0-1build1 [87.0 kB]
116s Get:45 http://ftpmaster.internal/ubuntu plucky-proposed/universe s390x libhts3t64 s390x 1.20+ds-2 [474 kB]
116s Get:46 http://ftpmaster.internal/ubuntu plucky/main s390x libio-string-perl all 1.08-4 [11.1 kB]
116s Get:47 http://ftpmaster.internal/ubuntu plucky/universe s390x libdata-stag-perl all 0.14-3 [372 kB]
116s Get:48 http://ftpmaster.internal/ubuntu plucky/universe s390x libbio-perl-perl all 1.7.8-1 [2580 kB]
116s Get:49 http://ftpmaster.internal/ubuntu plucky/universe s390x libbio-db-hts-perl s390x 3.01-4build4 [145 kB]
116s Get:50 http://ftpmaster.internal/ubuntu plucky/main s390x libbrotli-dev s390x 1.1.0-2build2 [394 kB]
116s Get:51 http://ftpmaster.internal/ubuntu plucky/main s390x libbz2-dev s390x 1.0.8-6 [39.1 kB]
116s Get:52 http://ftpmaster.internal/ubuntu plucky/main s390x libevent-2.1-7t64 s390x 2.1.12-stable-10 [145 kB]
116s Get:53 http://ftpmaster.internal/ubuntu plucky/main s390x libunbound8 s390x 1.20.0-1ubuntu2.1 [455 kB]
116s Get:54 http://ftpmaster.internal/ubuntu plucky/main s390x libgnutls-dane0t64 s390x 3.8.6-2ubuntu1 [24.1 kB]
116s Get:55 http://ftpmaster.internal/ubuntu plucky/main s390x libgnutls-openssl27t64 s390x 3.8.6-2ubuntu1 [24.1 kB]
116s Get:56 http://ftpmaster.internal/ubuntu plucky/main s390x libidn2-dev s390x 2.3.7-2build2 [122 kB]
116s Get:57 http://ftpmaster.internal/ubuntu plucky/main s390x libp11-kit-dev s390x 0.25.5-2ubuntu1 [22.7 kB]
116s Get:58 http://ftpmaster.internal/ubuntu plucky/main s390x libtasn1-6-dev s390x 4.19.0-3build1 [95.8 kB]
116s Get:59 http://ftpmaster.internal/ubuntu plucky/main s390x libgmpxx4ldbl s390x 2:6.3.0+dfsg-2ubuntu7 [10.1 kB]
116s Get:60 http://ftpmaster.internal/ubuntu plucky/main s390x libgmp-dev s390x 2:6.3.0+dfsg-2ubuntu7 [424 kB]
116s Get:61 http://ftpmaster.internal/ubuntu plucky/main s390x nettle-dev s390x 3.10-1 [1197 kB]
116s Get:62 http://ftpmaster.internal/ubuntu plucky/main s390x libgnutls28-dev s390x 3.8.6-2ubuntu1 [1008 kB]
116s Get:63 http://ftpmaster.internal/ubuntu plucky/main s390x libpkgconf3 s390x 1.8.1-3ubuntu1 [31.2 kB]
116s Get:64 http://ftpmaster.internal/ubuntu plucky/main s390x pkgconf-bin s390x 1.8.1-3ubuntu1 [21.4 kB]
116s Get:65 http://ftpmaster.internal/ubuntu plucky/main s390x pkgconf s390x 1.8.1-3ubuntu1 [16.8 kB]
116s Get:66 http://ftpmaster.internal/ubuntu plucky/main s390x libnghttp2-dev s390x 1.62.1-2 [121 kB]
116s Get:67 http://ftpmaster.internal/ubuntu plucky/main s390x libpsl-dev s390x 0.21.2-1.1build1 [77.3 kB]
116s Get:68 http://ftpmaster.internal/ubuntu plucky/main s390x zlib1g-dev s390x 1:1.3.dfsg+really1.3.1-1ubuntu1 [898 kB]
116s Get:69 http://ftpmaster.internal/ubuntu plucky/main s390x librtmp-dev s390x 2.4+20151223.gitfa8646d.1-2build7 [69.2 kB]
116s Get:70 http://ftpmaster.internal/ubuntu plucky/main s390x libssl-dev s390x 3.3.1-2ubuntu2 [2376 kB]
116s Get:71 http://ftpmaster.internal/ubuntu plucky/main s390x libssh2-1-dev s390x 1.11.0-7 [265 kB]
116s Get:72 http://ftpmaster.internal/ubuntu plucky/main s390x libzstd-dev s390x 1.5.6+dfsg-1 [408 kB]
116s Get:73 http://ftpmaster.internal/ubuntu plucky/main s390x libcurl4-gnutls-dev s390x 8.9.1-2ubuntu2 [495 kB]
116s Get:74 http://ftpmaster.internal/ubuntu plucky/main s390x libdeflate-dev s390x 1.21-1 [52.2 kB]
116s Get:75 http://ftpmaster.internal/ubuntu plucky/main s390x pkg-config s390x 1.8.1-3ubuntu1 [7402 B]
116s Get:76 http://ftpmaster.internal/ubuntu plucky/universe s390x libextutils-pkgconfig-perl all 1.16-3 [8524 B]
116s Get:77 http://ftpmaster.internal/ubuntu plucky/main s390x liblzma-dev s390x 5.6.2-2 [183 kB]
116s Get:78 http://ftpmaster.internal/ubuntu plucky-proposed/universe s390x libhts-dev s390x 1.20+ds-2 [5979 kB]
117s Get:79 http://ftpmaster.internal/ubuntu plucky/universe s390x libmodule-build-perl all 0.423400-2 [200 kB]
117s Get:80 http://ftpmaster.internal/ubuntu plucky/universe s390x pkg-perl-autopkgtest all 0.79 [18.5 kB]
117s Fetched 72.3 MB in 3s (22.4 MB/s)
117s Selecting previously unselected package m4.
117s (Reading database ... 
(Reading database ... 5%
(Reading database ... 10%
(Reading database ... 15%
(Reading database ... 20%
(Reading database ... 25%
(Reading database ... 30%
(Reading database ... 35%
(Reading database ... 40%
(Reading database ... 45%
(Reading database ... 50%
(Reading database ... 55%
(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 55483 files and directories currently installed.)
117s Preparing to unpack .../00-m4_1.4.19-4build1_s390x.deb ...
117s Unpacking m4 (1.4.19-4build1) ...
117s Selecting previously unselected package autoconf.
117s Preparing to unpack .../01-autoconf_2.72-3_all.deb ...
117s Unpacking autoconf (2.72-3) ...
117s Selecting previously unselected package dctrl-tools.
117s Preparing to unpack .../02-dctrl-tools_2.24-3build3_s390x.deb ...
117s Unpacking dctrl-tools (2.24-3build3) ...
117s Selecting previously unselected package autodep8.
117s Preparing to unpack .../03-autodep8_0.28+nmu1ubuntu1_all.deb ...
117s Unpacking autodep8 (0.28+nmu1ubuntu1) ...
117s Selecting previously unselected package autotools-dev.
117s Preparing to unpack .../04-autotools-dev_20220109.1_all.deb ...
117s Unpacking autotools-dev (20220109.1) ...
117s Selecting previously unselected package automake.
117s Preparing to unpack .../05-automake_1%3a1.16.5-1.3ubuntu1_all.deb ...
117s Unpacking automake (1:1.16.5-1.3ubuntu1) ...
117s Selecting previously unselected package autopoint.
117s Preparing to unpack .../06-autopoint_0.22.5-2_all.deb ...
117s Unpacking autopoint (0.22.5-2) ...
117s Selecting previously unselected package libisl23:s390x.
117s Preparing to unpack .../07-libisl23_0.27-1_s390x.deb ...
117s Unpacking libisl23:s390x (0.27-1) ...
117s Selecting previously unselected package libmpc3:s390x.
117s Preparing to unpack .../08-libmpc3_1.3.1-1build2_s390x.deb ...
117s Unpacking libmpc3:s390x (1.3.1-1build2) ...
117s Selecting previously unselected package cpp-14-s390x-linux-gnu.
117s Preparing to unpack .../09-cpp-14-s390x-linux-gnu_14.2.0-7ubuntu1_s390x.deb ...
117s Unpacking cpp-14-s390x-linux-gnu (14.2.0-7ubuntu1) ...
117s Selecting previously unselected package cpp-14.
117s Preparing to unpack .../10-cpp-14_14.2.0-7ubuntu1_s390x.deb ...
117s Unpacking cpp-14 (14.2.0-7ubuntu1) ...
117s Selecting previously unselected package cpp-s390x-linux-gnu.
117s Preparing to unpack .../11-cpp-s390x-linux-gnu_4%3a14.1.0-2ubuntu1_s390x.deb ...
117s Unpacking cpp-s390x-linux-gnu (4:14.1.0-2ubuntu1) ...
117s Selecting previously unselected package cpp.
117s Preparing to unpack .../12-cpp_4%3a14.1.0-2ubuntu1_s390x.deb ...
117s Unpacking cpp (4:14.1.0-2ubuntu1) ...
117s Selecting previously unselected package libcc1-0:s390x.
117s Preparing to unpack .../13-libcc1-0_14.2.0-7ubuntu1_s390x.deb ...
117s Unpacking libcc1-0:s390x (14.2.0-7ubuntu1) ...
117s Selecting previously unselected package libgomp1:s390x.
117s Preparing to unpack .../14-libgomp1_14.2.0-7ubuntu1_s390x.deb ...
117s Unpacking libgomp1:s390x (14.2.0-7ubuntu1) ...
117s Selecting previously unselected package libitm1:s390x.
117s Preparing to unpack .../15-libitm1_14.2.0-7ubuntu1_s390x.deb ...
117s Unpacking libitm1:s390x (14.2.0-7ubuntu1) ...
117s Selecting previously unselected package libasan8:s390x.
117s Preparing to unpack .../16-libasan8_14.2.0-7ubuntu1_s390x.deb ...
117s Unpacking libasan8:s390x (14.2.0-7ubuntu1) ...
117s Selecting previously unselected package libubsan1:s390x.
117s Preparing to unpack .../17-libubsan1_14.2.0-7ubuntu1_s390x.deb ...
117s Unpacking libubsan1:s390x (14.2.0-7ubuntu1) ...
117s Selecting previously unselected package libgcc-14-dev:s390x.
117s Preparing to unpack .../18-libgcc-14-dev_14.2.0-7ubuntu1_s390x.deb ...
117s Unpacking libgcc-14-dev:s390x (14.2.0-7ubuntu1) ...
117s Selecting previously unselected package gcc-14-s390x-linux-gnu.
118s Preparing to unpack .../19-gcc-14-s390x-linux-gnu_14.2.0-7ubuntu1_s390x.deb ...
118s Unpacking gcc-14-s390x-linux-gnu (14.2.0-7ubuntu1) ...
118s Selecting previously unselected package gcc-14.
118s Preparing to unpack .../20-gcc-14_14.2.0-7ubuntu1_s390x.deb ...
118s Unpacking gcc-14 (14.2.0-7ubuntu1) ...
118s Selecting previously unselected package gcc-s390x-linux-gnu.
118s Preparing to unpack .../21-gcc-s390x-linux-gnu_4%3a14.1.0-2ubuntu1_s390x.deb ...
118s Unpacking gcc-s390x-linux-gnu (4:14.1.0-2ubuntu1) ...
118s Selecting previously unselected package gcc.
118s Preparing to unpack .../22-gcc_4%3a14.1.0-2ubuntu1_s390x.deb ...
118s Unpacking gcc (4:14.1.0-2ubuntu1) ...
118s Selecting previously unselected package libstdc++-14-dev:s390x.
118s Preparing to unpack .../23-libstdc++-14-dev_14.2.0-7ubuntu1_s390x.deb ...
118s Unpacking libstdc++-14-dev:s390x (14.2.0-7ubuntu1) ...
118s Selecting previously unselected package g++-14-s390x-linux-gnu.
118s Preparing to unpack .../24-g++-14-s390x-linux-gnu_14.2.0-7ubuntu1_s390x.deb ...
118s Unpacking g++-14-s390x-linux-gnu (14.2.0-7ubuntu1) ...
118s Selecting previously unselected package g++-14.
118s Preparing to unpack .../25-g++-14_14.2.0-7ubuntu1_s390x.deb ...
118s Unpacking g++-14 (14.2.0-7ubuntu1) ...
118s Selecting previously unselected package g++-s390x-linux-gnu.
118s Preparing to unpack .../26-g++-s390x-linux-gnu_4%3a14.1.0-2ubuntu1_s390x.deb ...
118s Unpacking g++-s390x-linux-gnu (4:14.1.0-2ubuntu1) ...
118s Selecting previously unselected package g++.
118s Preparing to unpack .../27-g++_4%3a14.1.0-2ubuntu1_s390x.deb ...
118s Unpacking g++ (4:14.1.0-2ubuntu1) ...
118s Selecting previously unselected package build-essential.
118s Preparing to unpack .../28-build-essential_12.10ubuntu1_s390x.deb ...
118s Unpacking build-essential (12.10ubuntu1) ...
118s Selecting previously unselected package libdebhelper-perl.
118s Preparing to unpack .../29-libdebhelper-perl_13.20ubuntu1_all.deb ...
118s Unpacking libdebhelper-perl (13.20ubuntu1) ...
118s Selecting previously unselected package libtool.
118s Preparing to unpack .../30-libtool_2.4.7-7build1_all.deb ...
118s Unpacking libtool (2.4.7-7build1) ...
118s Selecting previously unselected package dh-autoreconf.
118s Preparing to unpack .../31-dh-autoreconf_20_all.deb ...
118s Unpacking dh-autoreconf (20) ...
118s Selecting previously unselected package libarchive-zip-perl.
118s Preparing to unpack .../32-libarchive-zip-perl_1.68-1_all.deb ...
118s Unpacking libarchive-zip-perl (1.68-1) ...
118s Selecting previously unselected package libfile-stripnondeterminism-perl.
118s Preparing to unpack .../33-libfile-stripnondeterminism-perl_1.14.0-1_all.deb ...
118s Unpacking libfile-stripnondeterminism-perl (1.14.0-1) ...
118s Selecting previously unselected package dh-strip-nondeterminism.
118s Preparing to unpack .../34-dh-strip-nondeterminism_1.14.0-1_all.deb ...
118s Unpacking dh-strip-nondeterminism (1.14.0-1) ...
118s Selecting previously unselected package debugedit.
118s Preparing to unpack .../35-debugedit_1%3a5.1-1_s390x.deb ...
118s Unpacking debugedit (1:5.1-1) ...
118s Selecting previously unselected package dwz.
118s Preparing to unpack .../36-dwz_0.15-1build6_s390x.deb ...
118s Unpacking dwz (0.15-1build6) ...
118s Selecting previously unselected package gettext.
118s Preparing to unpack .../37-gettext_0.22.5-2_s390x.deb ...
118s Unpacking gettext (0.22.5-2) ...
118s Selecting previously unselected package intltool-debian.
118s Preparing to unpack .../38-intltool-debian_0.35.0+20060710.6_all.deb ...
118s Unpacking intltool-debian (0.35.0+20060710.6) ...
118s Selecting previously unselected package po-debconf.
118s Preparing to unpack .../39-po-debconf_1.0.21+nmu1_all.deb ...
118s Unpacking po-debconf (1.0.21+nmu1) ...
118s Selecting previously unselected package debhelper.
118s Preparing to unpack .../40-debhelper_13.20ubuntu1_all.deb ...
118s Unpacking debhelper (13.20ubuntu1) ...
118s Selecting previously unselected package libdeflate0:s390x.
118s Preparing to unpack .../41-libdeflate0_1.21-1_s390x.deb ...
118s Unpacking libdeflate0:s390x (1.21-1) ...
118s Selecting previously unselected package libhtscodecs2:s390x.
118s Preparing to unpack .../42-libhtscodecs2_1.6.0-1build1_s390x.deb ...
118s Unpacking libhtscodecs2:s390x (1.6.0-1build1) ...
118s Selecting previously unselected package libhts3t64:s390x.
118s Preparing to unpack .../43-libhts3t64_1.20+ds-2_s390x.deb ...
118s Unpacking libhts3t64:s390x (1.20+ds-2) ...
118s Selecting previously unselected package libio-string-perl.
118s Preparing to unpack .../44-libio-string-perl_1.08-4_all.deb ...
118s Unpacking libio-string-perl (1.08-4) ...
118s Selecting previously unselected package libdata-stag-perl.
118s Preparing to unpack .../45-libdata-stag-perl_0.14-3_all.deb ...
118s Unpacking libdata-stag-perl (0.14-3) ...
118s Selecting previously unselected package libbio-perl-perl.
118s Preparing to unpack .../46-libbio-perl-perl_1.7.8-1_all.deb ...
118s Unpacking libbio-perl-perl (1.7.8-1) ...
118s Selecting previously unselected package libbio-db-hts-perl.
118s Preparing to unpack .../47-libbio-db-hts-perl_3.01-4build4_s390x.deb ...
118s Unpacking libbio-db-hts-perl (3.01-4build4) ...
119s Selecting previously unselected package libbrotli-dev:s390x.
119s Preparing to unpack .../48-libbrotli-dev_1.1.0-2build2_s390x.deb ...
119s Unpacking libbrotli-dev:s390x (1.1.0-2build2) ...
119s Selecting previously unselected package libbz2-dev:s390x.
119s Preparing to unpack .../49-libbz2-dev_1.0.8-6_s390x.deb ...
119s Unpacking libbz2-dev:s390x (1.0.8-6) ...
119s Selecting previously unselected package libevent-2.1-7t64:s390x.
119s Preparing to unpack .../50-libevent-2.1-7t64_2.1.12-stable-10_s390x.deb ...
119s Unpacking libevent-2.1-7t64:s390x (2.1.12-stable-10) ...
119s Selecting previously unselected package libunbound8:s390x.
119s Preparing to unpack .../51-libunbound8_1.20.0-1ubuntu2.1_s390x.deb ...
119s Unpacking libunbound8:s390x (1.20.0-1ubuntu2.1) ...
119s Selecting previously unselected package libgnutls-dane0t64:s390x.
119s Preparing to unpack .../52-libgnutls-dane0t64_3.8.6-2ubuntu1_s390x.deb ...
119s Unpacking libgnutls-dane0t64:s390x (3.8.6-2ubuntu1) ...
119s Selecting previously unselected package libgnutls-openssl27t64:s390x.
119s Preparing to unpack .../53-libgnutls-openssl27t64_3.8.6-2ubuntu1_s390x.deb ...
119s Unpacking libgnutls-openssl27t64:s390x (3.8.6-2ubuntu1) ...
119s Selecting previously unselected package libidn2-dev:s390x.
119s Preparing to unpack .../54-libidn2-dev_2.3.7-2build2_s390x.deb ...
119s Unpacking libidn2-dev:s390x (2.3.7-2build2) ...
119s Selecting previously unselected package libp11-kit-dev:s390x.
119s Preparing to unpack .../55-libp11-kit-dev_0.25.5-2ubuntu1_s390x.deb ...
119s Unpacking libp11-kit-dev:s390x (0.25.5-2ubuntu1) ...
119s Selecting previously unselected package libtasn1-6-dev:s390x.
119s Preparing to unpack .../56-libtasn1-6-dev_4.19.0-3build1_s390x.deb ...
119s Unpacking libtasn1-6-dev:s390x (4.19.0-3build1) ...
119s Selecting previously unselected package libgmpxx4ldbl:s390x.
119s Preparing to unpack .../57-libgmpxx4ldbl_2%3a6.3.0+dfsg-2ubuntu7_s390x.deb ...
119s Unpacking libgmpxx4ldbl:s390x (2:6.3.0+dfsg-2ubuntu7) ...
119s Selecting previously unselected package libgmp-dev:s390x.
119s Preparing to unpack .../58-libgmp-dev_2%3a6.3.0+dfsg-2ubuntu7_s390x.deb ...
119s Unpacking libgmp-dev:s390x (2:6.3.0+dfsg-2ubuntu7) ...
119s Selecting previously unselected package nettle-dev:s390x.
119s Preparing to unpack .../59-nettle-dev_3.10-1_s390x.deb ...
119s Unpacking nettle-dev:s390x (3.10-1) ...
119s Selecting previously unselected package libgnutls28-dev:s390x.
119s Preparing to unpack .../60-libgnutls28-dev_3.8.6-2ubuntu1_s390x.deb ...
119s Unpacking libgnutls28-dev:s390x (3.8.6-2ubuntu1) ...
119s Selecting previously unselected package libpkgconf3:s390x.
119s Preparing to unpack .../61-libpkgconf3_1.8.1-3ubuntu1_s390x.deb ...
119s Unpacking libpkgconf3:s390x (1.8.1-3ubuntu1) ...
119s Selecting previously unselected package pkgconf-bin.
119s Preparing to unpack .../62-pkgconf-bin_1.8.1-3ubuntu1_s390x.deb ...
119s Unpacking pkgconf-bin (1.8.1-3ubuntu1) ...
119s Selecting previously unselected package pkgconf:s390x.
119s Preparing to unpack .../63-pkgconf_1.8.1-3ubuntu1_s390x.deb ...
119s Unpacking pkgconf:s390x (1.8.1-3ubuntu1) ...
119s Selecting previously unselected package libnghttp2-dev:s390x.
119s Preparing to unpack .../64-libnghttp2-dev_1.62.1-2_s390x.deb ...
119s Unpacking libnghttp2-dev:s390x (1.62.1-2) ...
119s Selecting previously unselected package libpsl-dev:s390x.
119s Preparing to unpack .../65-libpsl-dev_0.21.2-1.1build1_s390x.deb ...
119s Unpacking libpsl-dev:s390x (0.21.2-1.1build1) ...
119s Selecting previously unselected package zlib1g-dev:s390x.
119s Preparing to unpack .../66-zlib1g-dev_1%3a1.3.dfsg+really1.3.1-1ubuntu1_s390x.deb ...
119s Unpacking zlib1g-dev:s390x (1:1.3.dfsg+really1.3.1-1ubuntu1) ...
119s Selecting previously unselected package librtmp-dev:s390x.
119s Preparing to unpack .../67-librtmp-dev_2.4+20151223.gitfa8646d.1-2build7_s390x.deb ...
119s Unpacking librtmp-dev:s390x (2.4+20151223.gitfa8646d.1-2build7) ...
119s Selecting previously unselected package libssl-dev:s390x.
119s Preparing to unpack .../68-libssl-dev_3.3.1-2ubuntu2_s390x.deb ...
119s Unpacking libssl-dev:s390x (3.3.1-2ubuntu2) ...
119s Selecting previously unselected package libssh2-1-dev:s390x.
119s Preparing to unpack .../69-libssh2-1-dev_1.11.0-7_s390x.deb ...
119s Unpacking libssh2-1-dev:s390x (1.11.0-7) ...
119s Selecting previously unselected package libzstd-dev:s390x.
119s Preparing to unpack .../70-libzstd-dev_1.5.6+dfsg-1_s390x.deb ...
119s Unpacking libzstd-dev:s390x (1.5.6+dfsg-1) ...
119s Selecting previously unselected package libcurl4-gnutls-dev:s390x.
119s Preparing to unpack .../71-libcurl4-gnutls-dev_8.9.1-2ubuntu2_s390x.deb ...
119s Unpacking libcurl4-gnutls-dev:s390x (8.9.1-2ubuntu2) ...
119s Selecting previously unselected package libdeflate-dev:s390x.
119s Preparing to unpack .../72-libdeflate-dev_1.21-1_s390x.deb ...
119s Unpacking libdeflate-dev:s390x (1.21-1) ...
119s Selecting previously unselected package pkg-config:s390x.
119s Preparing to unpack .../73-pkg-config_1.8.1-3ubuntu1_s390x.deb ...
119s Unpacking pkg-config:s390x (1.8.1-3ubuntu1) ...
119s Selecting previously unselected package libextutils-pkgconfig-perl.
119s Preparing to unpack .../74-libextutils-pkgconfig-perl_1.16-3_all.deb ...
119s Unpacking libextutils-pkgconfig-perl (1.16-3) ...
119s Selecting previously unselected package liblzma-dev:s390x.
119s Preparing to unpack .../75-liblzma-dev_5.6.2-2_s390x.deb ...
119s Unpacking liblzma-dev:s390x (5.6.2-2) ...
119s Selecting previously unselected package libhts-dev:s390x.
119s Preparing to unpack .../76-libhts-dev_1.20+ds-2_s390x.deb ...
119s Unpacking libhts-dev:s390x (1.20+ds-2) ...
119s Selecting previously unselected package libmodule-build-perl.
119s Preparing to unpack .../77-libmodule-build-perl_0.423400-2_all.deb ...
119s Adding 'diversion of /usr/bin/config_data to /usr/bin/config_data.diverted by libmodule-build-perl'
119s Adding 'diversion of /usr/share/man/man1/config_data.1.gz to /usr/share/man/man1/config_data.diverted.1.gz by libmodule-build-perl'
119s Unpacking libmodule-build-perl (0.423400-2) ...
119s Selecting previously unselected package pkg-perl-autopkgtest.
119s Preparing to unpack .../78-pkg-perl-autopkgtest_0.79_all.deb ...
119s Unpacking pkg-perl-autopkgtest (0.79) ...
119s Selecting previously unselected package autopkgtest-satdep.
119s Preparing to unpack .../79-1-autopkgtest-satdep.deb ...
119s Unpacking autopkgtest-satdep (0) ...
119s Setting up libhtscodecs2:s390x (1.6.0-1build1) ...
119s Setting up libgnutls-openssl27t64:s390x (3.8.6-2ubuntu1) ...
119s Setting up libzstd-dev:s390x (1.5.6+dfsg-1) ...
119s Setting up libarchive-zip-perl (1.68-1) ...
119s Setting up libdebhelper-perl (13.20ubuntu1) ...
119s Setting up libdeflate0:s390x (1.21-1) ...
119s Setting up m4 (1.4.19-4build1) ...
119s Setting up libevent-2.1-7t64:s390x (2.1.12-stable-10) ...
119s Setting up libgomp1:s390x (14.2.0-7ubuntu1) ...
119s Setting up libpsl-dev:s390x (0.21.2-1.1build1) ...
119s Setting up libmodule-build-perl (0.423400-2) ...
119s Setting up libio-string-perl (1.08-4) ...
119s Setting up autotools-dev (20220109.1) ...
119s Setting up libunbound8:s390x (1.20.0-1ubuntu2.1) ...
119s Setting up libpkgconf3:s390x (1.8.1-3ubuntu1) ...
119s Setting up libgmpxx4ldbl:s390x (2:6.3.0+dfsg-2ubuntu7) ...
119s Setting up libgnutls-dane0t64:s390x (3.8.6-2ubuntu1) ...
119s Setting up libssl-dev:s390x (3.3.1-2ubuntu2) ...
119s Setting up libmpc3:s390x (1.3.1-1build2) ...
119s Setting up autopoint (0.22.5-2) ...
119s Setting up pkgconf-bin (1.8.1-3ubuntu1) ...
119s Setting up libidn2-dev:s390x (2.3.7-2build2) ...
119s Setting up autoconf (2.72-3) ...
119s Setting up liblzma-dev:s390x (5.6.2-2) ...
119s Setting up libubsan1:s390x (14.2.0-7ubuntu1) ...
119s Setting up zlib1g-dev:s390x (1:1.3.dfsg+really1.3.1-1ubuntu1) ...
119s Setting up dwz (0.15-1build6) ...
119s Setting up libdata-stag-perl (0.14-3) ...
119s Setting up libasan8:s390x (14.2.0-7ubuntu1) ...
119s Setting up debugedit (1:5.1-1) ...
119s Setting up libhts3t64:s390x (1.20+ds-2) ...
119s Setting up libbio-perl-perl (1.7.8-1) ...
119s Setting up libisl23:s390x (0.27-1) ...
119s Setting up libtasn1-6-dev:s390x (4.19.0-3build1) ...
119s Setting up libdeflate-dev:s390x (1.21-1) ...
119s Setting up libcc1-0:s390x (14.2.0-7ubuntu1) ...
119s Setting up libbrotli-dev:s390x (1.1.0-2build2) ...
119s Setting up libp11-kit-dev:s390x (0.25.5-2ubuntu1) ...
119s Setting up dctrl-tools (2.24-3build3) ...
119s Setting up libitm1:s390x (14.2.0-7ubuntu1) ...
119s Setting up autodep8 (0.28+nmu1ubuntu1) ...
119s Setting up libbz2-dev:s390x (1.0.8-6) ...
119s Setting up automake (1:1.16.5-1.3ubuntu1) ...
119s update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode
119s Setting up libfile-stripnondeterminism-perl (1.14.0-1) ...
119s Setting up gettext (0.22.5-2) ...
119s Setting up libgmp-dev:s390x (2:6.3.0+dfsg-2ubuntu7) ...
119s Setting up nettle-dev:s390x (3.10-1) ...
119s Setting up libbio-db-hts-perl (3.01-4build4) ...
119s Setting up pkgconf:s390x (1.8.1-3ubuntu1) ...
119s Setting up intltool-debian (0.35.0+20060710.6) ...
119s Setting up pkg-config:s390x (1.8.1-3ubuntu1) ...
119s Setting up libssh2-1-dev:s390x (1.11.0-7) ...
119s Setting up pkg-perl-autopkgtest (0.79) ...
119s Setting up cpp-14-s390x-linux-gnu (14.2.0-7ubuntu1) ...
119s Setting up cpp-14 (14.2.0-7ubuntu1) ...
119s Setting up dh-strip-nondeterminism (1.14.0-1) ...
119s Setting up libgcc-14-dev:s390x (14.2.0-7ubuntu1) ...
119s Setting up libstdc++-14-dev:s390x (14.2.0-7ubuntu1) ...
119s Setting up libgnutls28-dev:s390x (3.8.6-2ubuntu1) ...
119s Setting up libnghttp2-dev:s390x (1.62.1-2) ...
119s Setting up cpp-s390x-linux-gnu (4:14.1.0-2ubuntu1) ...
119s Setting up libextutils-pkgconfig-perl (1.16-3) ...
119s Setting up po-debconf (1.0.21+nmu1) ...
119s Setting up gcc-14-s390x-linux-gnu (14.2.0-7ubuntu1) ...
119s Setting up gcc-s390x-linux-gnu (4:14.1.0-2ubuntu1) ...
119s Setting up librtmp-dev:s390x (2.4+20151223.gitfa8646d.1-2build7) ...
119s Setting up g++-14-s390x-linux-gnu (14.2.0-7ubuntu1) ...
119s Setting up cpp (4:14.1.0-2ubuntu1) ...
119s Setting up g++-s390x-linux-gnu (4:14.1.0-2ubuntu1) ...
119s Setting up libcurl4-gnutls-dev:s390x (8.9.1-2ubuntu2) ...
119s Setting up gcc-14 (14.2.0-7ubuntu1) ...
119s Setting up g++-14 (14.2.0-7ubuntu1) ...
119s Setting up libtool (2.4.7-7build1) ...
119s Setting up libhts-dev:s390x (1.20+ds-2) ...
119s Setting up gcc (4:14.1.0-2ubuntu1) ...
119s Setting up dh-autoreconf (20) ...
119s Setting up g++ (4:14.1.0-2ubuntu1) ...
119s update-alternatives: using /usr/bin/g++ to provide /usr/bin/c++ (c++) in auto mode
119s Setting up build-essential (12.10ubuntu1) ...
119s Setting up debhelper (13.20ubuntu1) ...
119s Setting up autopkgtest-satdep (0) ...
119s Processing triggers for man-db (2.12.1-3) ...
120s Processing triggers for install-info (7.1.1-1) ...
120s Processing triggers for libc-bin (2.40-1ubuntu3) ...
122s (Reading database ... 60050 files and directories currently installed.)
122s Removing autopkgtest-satdep (0) ...
123s autopkgtest [15:52:48]: test autodep8-perl-build-deps: /usr/share/pkg-perl-autopkgtest/runner build-deps
123s autopkgtest [15:52:48]: test autodep8-perl-build-deps: [-----------------------
123s t/00load.t ....... 
123s ok 1 - use Bio::DB::HTS;
123s ok 2 - use Bio::DB::HTS::Tabix;
123s ok 3 - use Bio::DB::HTS::Tabix::Iterator;
123s ok 4 - use Bio::DB::HTS::Kseq;
123s 1..4
123s ok
124s t/01bam.t ........ 
124s 1..452
124s # Running under perl version 5.040000 for linux
124s # Current time local: Sat Nov  2 15:52:48 2024
124s # Current time GMT:   Sat Nov  2 15:52:48 2024
124s # Using Test.pm version 1.31
124s ok 1
124s ok 2
124s ok 3
124s ok 4
124s ok 5
124s ok 6
124s ok 7
124s ok 8
124s ok 9
124s ok 10
124s ok 11
124s ok 12
124s ok 13
124s ok 14
124s ok 15
124s ok 16
124s ok 17
124s ok 18
124s ok 19
124s ok 20
124s ok 21
124s ok 22
124s ok 23
124s ok 24
124s ok 25
124s ok 26
124s ok 27
124s ok 28
124s ok 29
124s ok 30
124s ok 31
124s ok 32
124s ok 33
124s ok 34
124s ok 35
124s ok 36
124s ok 37
124s ok 38
124s ok 39
124s ok 40
124s ok 41
124s ok 42
124s ok 43
124s ok 44
124s ok 45
124s ok 46
124s ok 47
124s ok 48
124s ok 49
124s ok 50
124s ok 51
124s ok 52
124s ok 53
124s ok 54
124s ok 55
124s ok 56
124s ok 57
124s ok 58
124s ok 59
124s ok 60
124s ok 61
124s ok 62
124s ok 63
124s ok 64
124s ok 65
124s ok 66
124s ok 67
124s ok 68
124s ok 69
124s ok 70
124s ok 71
124s ok 72
124s ok 73
124s ok 74
124s ok 75
124s ok 76
124s ok 77
124s ok 78
124s ok 79
124s ok 80
124s ok 81
124s ok 82
124s ok 83
124s ok 84
124s ok 85
124s ok 86
124s ok 87
124s ok 88
124s ok 89
124s ok 90
124s ok 91
124s ok 92
124s ok 93
124s ok 94
124s ok 95
124s ok 96
124s ok 97
124s ok 98
124s ok 99
124s ok 100
124s ok 101
124s ok 102
124s ok 103
124s ok 104
124s ok 105
124s ok 106
124s ok 107
124s ok 108
124s ok 109
124s ok 110
124s ok 111
124s ok 112
124s ok 113
124s ok 114
124s ok 115
124s ok 116
124s ok 117
124s ok 118
124s ok 119
124s ok 120
124s ok 121
124s ok 122
124s ok 123
124s ok 124
124s ok 125
124s ok 126
124s ok 127
124s ok 128
124s ok 129
124s ok 130
124s ok 131
124s ok 132
124s ok 133
124s ok 134
124s ok 135
124s ok 136
124s ok 137
124s ok 138
124s ok 139
124s ok 140
124s ok 141
124s ok 142
124s ok 143
124s ok 144
124s ok 145
124s ok 146
124s ok 147
124s ok 148
124s ok 149
124s ok 150
124s ok 151
124s ok 152
124s ok 153
124s ok 154
124s ok 155
124s ok 156
124s ok 157
124s ok 158
124s ok 159
124s ok 160
124s ok 161
124s ok 162
124s ok 163
124s ok 164
124s ok 165
124s ok 166
124s ok 167
124s ok 168
124s ok 169
124s ok 170
124s ok 171
124s ok 172
124s ok 173
124s ok 174
124s ok 175
124s ok 176
124s ok 177
124s ok 178
124s ok 179
124s ok 180
124s ok 181
124s ok 182
124s ok 183
124s ok 184
124s ok 185
124s ok 186
124s ok 187
124s ok 188
124s ok 189
124s ok 190
124s ok 191
124s ok 192
124s ok 193
124s ok 194
124s ok 195
124s ok 196
124s ok 197
124s ok 198
124s ok 199
124s ok 200
124s ok 201
124s ok 202
124s ok 203
124s ok 204
124s ok 205
124s ok 206
124s ok 207
124s ok 208
124s ok 209
124s ok 210
124s ok 211
124s ok 212
124s ok 213
124s ok 214
124s ok 215
124s ok 216
124s ok 217
124s ok 218
124s ok 219
124s ok 220
124s ok 221
124s ok 222
124s ok 223
124s ok 224
124s ok 225
124s ok 226
124s ok 227
124s ok 228
124s ok 229
124s ok 230
124s ok 231
124s ok 232
124s ok 233
124s ok 234
124s ok 235
124s ok 236
124s ok 237
124s ok 238
124s ok 239
124s ok 240
124s ok 241
124s ok 242
124s ok 243
124s ok 244
124s ok 245
124s ok 246
124s ok 247
124s ok 248
124s ok 249
124s ok 250
124s ok 251
124s ok 252
124s ok 253
124s ok 254
124s ok 255
124s ok 256
124s ok 257
124s ok 258
124s ok 259
124s ok 260
124s ok 261
124s ok 262
124s ok 263
124s ok 264
124s ok 265
124s ok 266
124s ok 267
124s ok 268
124s ok 269
124s ok 270
124s ok 271
124s ok 272
124s ok 273
124s ok 274
124s ok 275
124s ok 276
124s ok 277
124s ok 278
124s ok 279
124s ok 280
124s ok 281
124s ok 282
124s ok 283
124s ok 284
124s ok 285
124s ok 286
124s ok 287
124s ok 288
124s ok 289
124s ok 290
124s ok 291
124s ok 292
124s ok 293
124s ok 294
124s ok 295
124s ok 296
124s ok 297
124s ok 298
124s ok 299
124s ok 300
124s ok 301
124s ok 302
124s ok 303
124s ok 304
124s ok 305
124s ok 306
124s ok 307
124s ok 308
124s ok 309
124s ok 310
124s ok 311
124s ok 312
124s ok 313
124s ok 314
124s ok 315
124s ok 316
124s ok 317
124s ok 318
124s ok 319
124s ok 320
124s ok 321
124s ok 322
124s ok 323
124s ok 324
124s ok 325
124s ok 326
124s ok 327
124s ok 328
124s ok 329
124s ok 330
124s ok 331
124s ok 332
124s ok 333
124s ok 334
124s ok 335
124s ok 336
124s ok 337
124s ok 338
124s ok 339
124s ok 340
124s ok 341
124s ok 342
124s ok 343
124s ok 344
124s ok 345
124s ok 346
124s ok 347
124s ok 348
124s ok 349
124s ok 350
124s ok 351
124s ok 352
124s ok 353
124s ok 354
124s ok 355
124s ok 356
124s ok 357
124s ok 358
124s ok 359
124s ok 360
124s ok 361
124s ok 362
124s ok 363
124s ok 364
124s ok 365
124s ok 366
124s ok 367
124s ok 368
124s ok 369
124s ok 370
124s ok 371
124s ok 372
124s ok 373
124s ok 374
124s ok 375
124s ok 376
124s ok 377
124s ok 378
124s ok 379
124s ok 380
124s ok 381
124s ok 382
124s ok 383
124s ok 384
124s ok 385
124s ok 386
124s ok 387
124s ok 388
124s ok 389
124s ok 390
124s ok 391
124s ok 392
124s ok 393
124s ok 394
124s ok 395
124s ok 396
124s ok 397
124s ok 398
124s ok 399
124s ok 400
124s ok 401
124s ok 402
124s ok 403
124s ok 404
124s ok 405
124s ok 406
124s ok 407
124s ok 408
124s ok 409
124s ok 410
124s ok 411
124s ok 412
124s ok 413
124s ok 414
124s ok 415
124s ok 416
124s ok 417
124s ok 418
124s ok 419
124s ok 420
124s ok 421
124s ok 422
124s ok 423
124s ok 424
124s ok 425
124s ok 426
124s ok 427
124s ok 428
124s ok 429
124s ok 430
124s ok 431
124s ok 432
124s ok 433
124s ok 434
124s ok 435
124s ok 436
124s ok 437
124s ok 438
124s ok 439
124s ok 440
124s ok 441
124s ok 442
124s ok 443
124s ok 444
124s ok 445
124s ok 446
124s ok 447
124s ok 448
124s ok 449
124s ok 450
124s ok 451
124s ok 452
124s ok
124s t/02faidx.t ...... 
124s 1..15
124s ok 1 - use Bio::DB::HTS;
124s ok 2 - use Bio::DB::HTS::Faidx;
124s ok 3
124s ok 4
124s ok 5
124s ok 6
124s ok 7
124s ok 8
124s ok 9
124s ok 10
124s ok 11
124s ok 12
124s # 230218
124s ok 13 - length of I
124s ok 14 - has sequence I
124s ok 15 - Does not have sequence II
124s ok
127s t/03cram.t ....... 
127s 1..139
127s # Running under perl version 5.040000 for linux
127s # Current time local: Sat Nov  2 15:52:49 2024
127s # Current time GMT:   Sat Nov  2 15:52:49 2024
127s # Using Test.pm version 1.31
127s ok 1
127s ok 2
127s ok 3
127s ok 4
127s ok 5
127s ok 6
127s ok 7
127s ok 8
127s ok 9
127s ok 10
127s ok 11
127s ok 12
127s ok 13
127s ok 14
127s ok 15
127s ok 16
127s ok 17
127s ok 18
127s ok 19
127s ok 20
127s ok 21
127s ok 22
127s ok 23
127s ok 24
127s ok 25
127s ok 26
127s ok 27
127s ok 28
127s ok 29
127s ok 30
127s ok 31
127s ok 32
127s ok 33
127s ok 34
127s ok 35
127s ok 36
127s ok 37
127s ok 38
127s ok 39
127s ok 40
127s ok 41
127s ok 42
127s ok 43
127s ok 44
127s ok 45
127s ok 46
127s ok 47
127s ok 48
127s ok 49
127s ok 50
127s ok 51
127s ok 52
127s ok 53
127s ok 54
127s ok 55
127s ok 56
127s ok 57
127s ok 58
127s ok 59
127s ok 60
127s ok 61
127s ok 62
127s ok 63
127s ok 64
127s ok 65
127s ok 66
127s ok 67
127s ok 68
127s ok 69
127s ok 70
127s ok 71
127s ok 72
127s ok 73
127s ok 74
127s ok 75
127s ok 76
127s ok 77
127s ok 78
127s ok 79
127s ok 80
127s ok 81
127s ok 82
127s ok 83
127s ok 84
127s ok 85
127s ok 86
127s ok 87
127s ok 88
127s ok 89
127s ok 90
127s ok 91
127s ok 92
127s ok 93
127s ok 94
127s ok 95
127s ok 96
127s ok 97
127s ok 98
127s ok 99
127s ok 100
127s ok 101
127s ok 102
127s ok 103
127s ok 104
127s ok 105
127s ok 106
127s ok 107
127s ok 108
127s ok 109
127s ok 110
127s ok 111
127s ok 112
127s ok 113
127s ok 114
127s ok 115
127s ok 116
127s ok 117
127s ok 118
127s ok 119
127s ok 120
127s ok 121
127s ok 122
127s ok 123
127s ok 124
127s ok 125
127s ok 126
127s ok 127
127s ok 128
127s ok 129
127s ok 130
127s ok 131
127s ok 132
127s ok 133
127s ok 134
127s ok 135
127s ok 136
127s ok 137
127s ok 138
127s ok 139
127s ok
127s t/04tabix.t ...... 
127s 1..21
127s ok 1 - use Bio::DB::HTS::Tabix;
127s ok 2 - \#CHROM  FROM    TO      GERP
127s ok 3 - \#CHROM  FROM    TO      GERP
127s ok 4 - can query a region
127s ok 5 - can get a value from the iterator
127s ok 6 - row value is correct
127s ok 7 - correct number of values come back from the iterator
127s ok 8 - A reference of type 'ARRAY' isa 'ARRAY'
127s ok 9 - seqnames are correct
127s ok 10 - can query a region with ':' in chr
127s ok 11 - can get a value from the iterator
127s ok 12 - row value is correct with ':' in chr
127s ok 13 - can query a region with ':' in chr, no end
127s ok 14 - can get a value from the iterator
127s ok 15 - row value is correct with ':' in chr, no end
127s ok 16 - can query a region with ':' in chr, no coord
127s ok 17 - can get a value from the iterator
127s ok 18 - row value is correct with ':' in chr, no coord
127s ok 19 - querying non existent chrom
127s ok 20 - \#\#fileformat=VCFv4.2
127s ok 21 - \#\#reference=human_b36_both.fasta
127s ok
127s t/05vcf.t ........ 
127s 1..177
127s ok 1 - use Bio::DB::HTS::VCF;
127s ok 2 - use Bio::DB::HTS::VCF::Row;
127s ok 3 - use Bio::DB::HTS::VCF::RowPtr;
127s ok 4 - use Bio::DB::HTS::VCF::Header;
127s ok 5 - use Bio::DB::HTS::VCF::HeaderPtr;
127s ok 6 - Chromosome value read
127s ok 7 - Chromosome value read
127s ok 8 - Position value read
127s ok 9 - Quality value read
127s ok 10 - Quality value read
127s ok 11 - ID value read
127s ok 12 - Number of alleles value read
127s ok 13 - A reference of type 'ARRAY' isa 'ARRAY'
127s ok 14 - alleles are correct
127s ok 15 - VCF file open
127s ok 16 - correct number of variants identified in file
127s ok 17 - Header formatted string
127s ok 18 - VCF Header version matches
127s ok 19 - Number of samples
127s ok 20 - sample names correct
127s ok 21 - Number of seqnames
127s ok 22
127s ok 23 - sequence names correct
127s ok 24 - Next row
127s ok 25 - Chromosome value read
127s ok 26 - Position value read
127s ok 27 - ID value read
127s ok 28 - Num Filters OK
127s ok 29 - Actual Filter present
127s ok 30 - PASS filter absent
127s ok 31 - Variant type matches
127s ok 32 - info read correctly
127s ok 33 - A reference of type 'ARRAY' isa 'ARRAY'
127s ok 34 - info flag read correctly
127s ok 35 - info flag type correct
127s ok 36 - A reference of type 'ARRAY' isa 'ARRAY'
127s ok 37 - info float read correctly
127s ok 38 - info float type correct
127s ok 39 - A reference of type 'ARRAY' isa 'ARRAY'
127s ok 40 - info string read correctly
127s ok 41 - info String type correct
127s ok 42 - A reference of type 'ARRAY' isa 'ARRAY'
127s ok 43 - info ints read correctly
127s ok 44 - info int type correct
127s ok 45 - format int read
127s ok 46 - format int read
127s ok 47 - format id not present
127s ok 48 - format read
127s ok 49 - Next row
127s ok 50 - Chromosome value read
127s ok 51 - Position value read
127s ok 52 - Quality value read
127s ok 53 - Reference value read
127s ok 54 - Num Alleles
127s ok 55 - Is SNP
127s ok 56 - A reference of type 'ARRAY' isa 'ARRAY'
127s ok 57 - alleles are correct
127s ok 58 - Num Filters OK
127s ok 59 - PASS Filter present
127s ok 60 - Actual Filter absent
127s ok 61 - Made up filter not existing
127s ok 62 - info read correctly
127s ok 63 - format int read
127s ok 64 - format int read
127s ok 65 - format id not present
127s ok 66 - format read
127s ok 67 - Next row
127s ok 68 - Chromosome value read
127s ok 69 - int format type correct
127s ok 70 - format int read
127s ok 71 - format int read
127s ok 72 - format int read
127s # !!! Not sure this is correct !!!
127s ok 73 - format int read
127s ok 74 - format read
127s ok 75 - A reference of type 'ARRAY' isa 'ARRAY'
127s ok 76 - genotypes read correctly
127s ok 77 - format id not found
127s ok 78 - info id not found
127s ok 79 - info read correctly
127s ok 80 - can query a region
127s ok 81 - can get a value from the iterator
127s ok 82 - chr
127s ok 83 - position
127s ok 84 - id
127s ok 85 - reference
127s ok 86 - info
127s ok 87 - info
127s ok 88 - info
127s ok 89 - info
127s ok 90 - can get a value from the iterator
127s ok 91 - chr
127s ok 92 - position
127s ok 93 - id
127s ok 94 - reference
127s ok 95 - info
127s ok 96 - no more results
127s ok 97 - BCF file open
127s ok 98 - correct number of variants identified in file
127s ok 99 - Header formatted string
127s ok 100 - VCF Header version matches
127s ok 101 - Number of samples
127s ok 102 - sample names correct
127s ok 103 - Number of seqnames
127s ok 104 - sequence names correct
127s ok 105 - Next row
127s ok 106 - Chromosome value read
127s ok 107 - Position value read
127s ok 108 - ID value read
127s ok 109 - Num Filters OK
127s ok 110 - Actual Filter present
127s ok 111 - PASS filter absent
127s ok 112 - Variant type matches
127s ok 113 - info read correctly
127s ok 114 - A reference of type 'ARRAY' isa 'ARRAY'
127s ok 115 - info flag read correctly
127s ok 116 - info flag type correct
127s ok 117 - A reference of type 'ARRAY' isa 'ARRAY'
127s ok 118 - info float read correctly
127s ok 119 - info float type correct
127s ok 120 - A reference of type 'ARRAY' isa 'ARRAY'
127s ok 121 - info string read correctly
127s ok 122 - info String type correct
127s ok 123 - A reference of type 'ARRAY' isa 'ARRAY'
127s ok 124 - info ints read correctly
127s ok 125 - info int type correct
127s ok 126 - format int read
127s ok 127 - format int read
127s ok 128 - format ID not present
127s ok 129 - format read
127s ok 130 - Next row
127s ok 131 - Chromosome value read
127s ok 132 - Position value read
127s ok 133 - Quality value read
127s ok 134 - Reference value read
127s ok 135 - Num Alleles
127s ok 136 - Is SNP
127s ok 137 - A reference of type 'ARRAY' isa 'ARRAY'
127s ok 138 - alleles are correct
127s ok 139 - Num Filters OK
127s ok 140 - PASS Filter present
127s ok 141 - Actual Filter absent
127s ok 142 - Made up filter not existing
127s ok 143 - info read correctly
127s ok 144 - format int read
127s ok 145 - format int read
127s ok 146 - format ID not present
127s ok 147 - format read
127s ok 148 - Next row
127s ok 149 - Chromosome value read
127s ok 150 - int format type correct
127s ok 151 - format int read
127s ok 152 - format int read
127s ok 153 - format int read
127s # !!! Not sure this is correct !!!
127s ok 154 - format int read
127s ok 155 - format read
127s ok 156 - A reference of type 'ARRAY' isa 'ARRAY'
127s ok 157 - genotypes read correctly
127s ok 158 - format id not found
127s ok 159 - info id not found
127s ok 160 - info read correctly
127s ok 161 - can query a region
127s ok 162 - can get a value from the iterator
127s ok 163 - chr
127s ok 164 - position
127s ok 165 - id
127s ok 166 - reference
127s ok 167 - info
127s ok 168 - info
127s ok 169 - info
127s ok 170 - info
127s ok 171 - can get a value from the iterator
127s ok 172 - chr
127s ok 173 - position
127s ok 174 - id
127s ok 175 - reference
127s ok 176 - info
127s ok 177 - no more results
127s ok
128s t/06kseq.t ....... 
128s ok 1 - correct num. seqs in bug2335
128s ok 2 - sample sequence obtained
128s ok 3 - seq matches bug2335
128s ok 4 - desc matches bug2335
128s ok 5 - name matches bug2335
128s ok 6 - qual matches bug2335
128s ok 7 - Checking qual and seq lengths are the same in bug2335
128s ok 8 - Checking qual and seq lengths are the same using object methods in bug2335
128s ok 9 - correct num. seqs in evil_wrapping
128s ok 10 - sample sequence obtained
128s ok 11 - seq matches evil_wrapping
128s ok 12 - desc matches evil_wrapping
128s ok 13 - name matches evil_wrapping
128s ok 14 - qual matches evil_wrapping
128s ok 15 - Checking qual and seq lengths are the same in evil_wrapping
128s ok 16 - Checking qual and seq lengths are the same using object methods in evil_wrapping
128s ok 17 - correct num. seqs in example
128s ok 18 - sample sequence obtained
128s ok 19 - seq matches example
128s ok 20 - desc matches example
128s ok 21 - name matches example
128s ok 22 - qual matches example
128s ok 23 - Checking qual and seq lengths are the same in example
128s ok 24 - Checking qual and seq lengths are the same using object methods in example
128s ok 25 - correct num. seqs in illumina_faked
128s ok 26 - sample sequence obtained
128s ok 27 - seq matches illumina_faked
128s ok 28 - desc matches illumina_faked
128s ok 29 - name matches illumina_faked
128s ok 30 - qual matches illumina_faked
128s ok 31 - Checking qual and seq lengths are the same in illumina_faked
128s ok 32 - Checking qual and seq lengths are the same using object methods in illumina_faked
128s ok 33 - correct num. seqs in sanger_93
128s ok 34 - sample sequence obtained
128s ok 35 - seq matches sanger_93
128s ok 36 - desc matches sanger_93
128s ok 37 - name matches sanger_93
128s ok 38 - qual matches sanger_93
128s ok 39 - Checking qual and seq lengths are the same in sanger_93
128s ok 40 - Checking qual and seq lengths are the same using object methods in sanger_93
128s ok 41 - correct num. seqs in sanger_faked
128s ok 42 - sample sequence obtained
128s ok 43 - seq matches sanger_faked
128s ok 44 - desc matches sanger_faked
128s ok 45 - name matches sanger_faked
128s ok 46 - qual matches sanger_faked
128s ok 47 - Checking qual and seq lengths are the same in sanger_faked
128s ok 48 - Checking qual and seq lengths are the same using object methods in sanger_faked
128s ok 49 - correct num. seqs in solexa_example
128s ok 50 - sample sequence obtained
128s ok 51 - seq matches solexa_example
128s ok 52 - desc matches solexa_example
128s ok 53 - name matches solexa_example
128s ok 54 - qual matches solexa_example
128s ok 55 - Checking qual and seq lengths are the same in solexa_example
128s ok 56 - Checking qual and seq lengths are the same using object methods in solexa_example
128s ok 57 - correct num. seqs in solexa_faked
128s ok 58 - sample sequence obtained
128s ok 59 - seq matches solexa_faked
128s ok 60 - desc matches solexa_faked
128s ok 61 - name matches solexa_faked
128s ok 62 - qual matches solexa_faked
128s ok 63 - Checking qual and seq lengths are the same in solexa_faked
128s ok 64 - Checking qual and seq lengths are the same using object methods in solexa_faked
128s ok 65 - correct num. seqs in test1_sanger
128s ok 66 - sample sequence obtained
128s ok 67 - seq matches test1_sanger
128s ok 68 - desc matches test1_sanger
128s ok 69 - name matches test1_sanger
128s ok 70 - qual matches test1_sanger
128s ok 71 - Checking qual and seq lengths are the same in test1_sanger
128s ok 72 - Checking qual and seq lengths are the same using object methods in test1_sanger
128s ok 73 - correct num. seqs in test2_solexa
128s ok 74 - sample sequence obtained
128s ok 75 - seq matches test2_solexa
128s ok 76 - desc matches test2_solexa
128s ok 77 - name matches test2_solexa
128s ok 78 - qual matches test2_solexa
128s ok 79 - Checking qual and seq lengths are the same in test2_solexa
128s ok 80 - Checking qual and seq lengths are the same using object methods in test2_solexa
128s ok 81 - correct num. seqs in test3_illumina
128s ok 82 - sample sequence obtained
128s ok 83 - seq matches test3_illumina
128s ok 84 - desc matches test3_illumina
128s ok 85 - name matches test3_illumina
128s ok 86 - qual matches test3_illumina
128s ok 87 - Checking qual and seq lengths are the same in test3_illumina
128s ok 88 - Checking qual and seq lengths are the same using object methods in test3_illumina
128s ok 89 - correct num. seqs in tricky
128s ok 90 - sample sequence obtained
128s ok 91 - seq matches tricky
128s ok 92 - desc matches tricky
128s ok 93 - name matches tricky
128s ok 94 - qual matches tricky
128s ok 95 - Checking qual and seq lengths are the same in tricky
128s ok 96 - Checking qual and seq lengths are the same using object methods in tricky
128s ok 97 - correct num. seqs in zero_qual
128s ok 98 - sample sequence obtained
128s ok 99 - seq matches zero_qual
128s ok 100 - desc matches zero_qual
128s ok 101 - name matches zero_qual
128s ok 102 - qual matches zero_qual
128s ok 103 - Checking qual and seq lengths are the same in zero_qual
128s ok 104 - Checking qual and seq lengths are the same using object methods in zero_qual
128s 1..104
128s ok
128s t/07cramwrite.t .. 
128s 1..22
128s # Running under perl version 5.040000 for linux
128s # Current time local: Sat Nov  2 15:52:52 2024
128s # Current time GMT:   Sat Nov  2 15:52:52 2024
128s # Using Test.pm version 1.31
128s ok 1
128s ok 2
128s ok 3
128s ok 4
128s ok 5
128s ok 6
128s ok 7
128s ok 8
128s ok 9
128s ok 10
128s ok 11
128s ok 12
128s ok 13
128s ok 14
128s ok 15
128s ok 16
128s ok 17
128s ok 18
128s ok 19
128s ok 20
128s ok 21
128s ok 22
128s ok
128s t/08bamwrite.t ... 
128s 1..22
128s # Running under perl version 5.040000 for linux
128s # Current time local: Sat Nov  2 15:52:53 2024
128s # Current time GMT:   Sat Nov  2 15:52:53 2024
128s # Using Test.pm version 1.31
128s ok 1
128s ok 2
128s ok 3
128s ok 4
128s ok 5
128s ok 6
128s ok 7
128s ok 8
128s ok 9
128s ok 10
128s ok 11
128s ok 12
128s ok 13
128s ok 14
128s ok 15
128s ok 16
128s ok 17
128s ok 18
128s ok 19
128s ok 20
128s ok 21
128s ok 22
128s ok
128s t/09sam.t ........ 
128s ok 1
128s ok 2 # skip Cannot test header reading for htslib < 1.5
128s ok 3 # skip Cannot test header reading for htslib < 1.5
128s ok 4 # skip Cannot test header reading for htslib < 1.5
128s ok 5 # skip Cannot test header reading for htslib < 1.5
128s ok 6 # skip Cannot test header reading for htslib < 1.5
128s ok 7 # skip Cannot test header reading for htslib < 1.5
128s ok 8 # skip Cannot test header reading for htslib < 1.5
128s ok 9 # skip Cannot test header reading for htslib < 1.5
128s ok 10 # skip Cannot test header reading for htslib < 1.5
128s ok 11 # skip Cannot test header reading for htslib < 1.5
128s ok 12
128s ok 13
128s ok 14 # skip Cannot test iterating over alignments for htslib < 1.5
128s ok 15 # skip Cannot test iterating over alignments for htslib < 1.5
128s ok 16 # skip Cannot test iterating over alignments for htslib < 1.5
128s ok 17 # skip Cannot test iterating over alignments for htslib < 1.5
128s ok 18
128s ok 19
128s ok 20
128s ok 21
128s ok 22 - An object of class 'Bio::PrimarySeq' isa 'Bio::PrimarySeq'
128s ok 23
128s 1..23
128s ok
128s t/10leak.t ....... skipped: require Test::LeakTrace
128s All tests successful.
128s Files=11, Tests=979,  5 wallclock secs ( 0.06 usr  0.01 sys +  4.71 cusr  0.24 csys =  5.02 CPU)
128s Result: PASS
129s autopkgtest [15:52:54]: test autodep8-perl-build-deps: -----------------------]
129s autopkgtest [15:52:54]: test autodep8-perl-build-deps:  - - - - - - - - - - results - - - - - - - - - -
129s autodep8-perl-build-deps PASS
129s autopkgtest [15:52:54]: test autodep8-perl: preparing testbed
254s autopkgtest [15:54:59]: testbed dpkg architecture: s390x
254s autopkgtest [15:54:59]: testbed apt version: 2.9.8
254s autopkgtest [15:54:59]: @@@@@@@@@@@@@@@@@@@@ test bed setup
255s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease [73.9 kB]
255s Get:2 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse Sources [40.4 kB]
256s Get:3 http://ftpmaster.internal/ubuntu plucky-proposed/main Sources [172 kB]
256s Get:4 http://ftpmaster.internal/ubuntu plucky-proposed/universe Sources [2555 kB]
256s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/restricted Sources [7016 B]
256s Get:6 http://ftpmaster.internal/ubuntu plucky-proposed/main s390x Packages [212 kB]
256s Get:7 http://ftpmaster.internal/ubuntu plucky-proposed/universe s390x Packages [1819 kB]
257s Get:8 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse s390x Packages [33.3 kB]
257s Fetched 4913 kB in 2s (2909 kB/s)
257s Reading package lists...
259s Reading package lists...
259s Building dependency tree...
259s Reading state information...
259s Calculating upgrade...
259s The following packages will be upgraded:
259s   libblockdev-crypto3 libblockdev-fs3 libblockdev-loop3 libblockdev-mdraid3
259s   libblockdev-nvme3 libblockdev-part3 libblockdev-swap3 libblockdev-utils3
259s   libblockdev3 libevdev2 libftdi1-2 libinih1 libpipeline1 nano
259s   python3-lazr.uri
259s 15 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
259s Need to get 611 kB of archives.
259s After this operation, 52.2 kB of additional disk space will be used.
259s Get:1 http://ftpmaster.internal/ubuntu plucky/main s390x libevdev2 s390x 1.13.3+dfsg-1 [35.9 kB]
259s Get:2 http://ftpmaster.internal/ubuntu plucky/main s390x libpipeline1 s390x 1.5.8-1 [32.5 kB]
259s Get:3 http://ftpmaster.internal/ubuntu plucky/main s390x nano s390x 8.2-1 [298 kB]
260s Get:4 http://ftpmaster.internal/ubuntu plucky/main s390x libblockdev-utils3 s390x 3.2.0-2 [19.3 kB]
260s Get:5 http://ftpmaster.internal/ubuntu plucky/main s390x libblockdev-crypto3 s390x 3.2.0-2 [23.7 kB]
260s Get:6 http://ftpmaster.internal/ubuntu plucky/main s390x libblockdev-fs3 s390x 3.2.0-2 [36.1 kB]
260s Get:7 http://ftpmaster.internal/ubuntu plucky/main s390x libblockdev-loop3 s390x 3.2.0-2 [7092 B]
260s Get:8 http://ftpmaster.internal/ubuntu plucky/main s390x libblockdev-mdraid3 s390x 3.2.0-2 [12.8 kB]
260s Get:9 http://ftpmaster.internal/ubuntu plucky/main s390x libblockdev-nvme3 s390x 3.2.0-2 [18.1 kB]
260s Get:10 http://ftpmaster.internal/ubuntu plucky/main s390x libblockdev-part3 s390x 3.2.0-2 [15.3 kB]
260s Get:11 http://ftpmaster.internal/ubuntu plucky/main s390x libblockdev-swap3 s390x 3.2.0-2 [7704 B]
260s Get:12 http://ftpmaster.internal/ubuntu plucky/main s390x libblockdev3 s390x 3.2.0-2 [53.8 kB]
260s Get:13 http://ftpmaster.internal/ubuntu plucky/main s390x libftdi1-2 s390x 1.5-7 [29.2 kB]
260s Get:14 http://ftpmaster.internal/ubuntu plucky/main s390x libinih1 s390x 58-1ubuntu1 [7602 B]
260s Get:15 http://ftpmaster.internal/ubuntu plucky/main s390x python3-lazr.uri all 1.0.6-4 [13.6 kB]
260s Fetched 611 kB in 1s (1163 kB/s)
260s (Reading database ... 
(Reading database ... 5%
(Reading database ... 10%
(Reading database ... 15%
(Reading database ... 20%
(Reading database ... 25%
(Reading database ... 30%
(Reading database ... 35%
(Reading database ... 40%
(Reading database ... 45%
(Reading database ... 50%
(Reading database ... 55%
(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 55483 files and directories currently installed.)
260s Preparing to unpack .../00-libevdev2_1.13.3+dfsg-1_s390x.deb ...
260s Unpacking libevdev2:s390x (1.13.3+dfsg-1) over (1.13.2+dfsg-1) ...
260s Preparing to unpack .../01-libpipeline1_1.5.8-1_s390x.deb ...
260s Unpacking libpipeline1:s390x (1.5.8-1) over (1.5.7-2) ...
260s Preparing to unpack .../02-nano_8.2-1_s390x.deb ...
260s Unpacking nano (8.2-1) over (8.1-1) ...
260s Preparing to unpack .../03-libblockdev-utils3_3.2.0-2_s390x.deb ...
260s Unpacking libblockdev-utils3:s390x (3.2.0-2) over (3.1.1-2) ...
260s Preparing to unpack .../04-libblockdev-crypto3_3.2.0-2_s390x.deb ...
260s Unpacking libblockdev-crypto3:s390x (3.2.0-2) over (3.1.1-2) ...
260s Preparing to unpack .../05-libblockdev-fs3_3.2.0-2_s390x.deb ...
260s Unpacking libblockdev-fs3:s390x (3.2.0-2) over (3.1.1-2) ...
260s Preparing to unpack .../06-libblockdev-loop3_3.2.0-2_s390x.deb ...
260s Unpacking libblockdev-loop3:s390x (3.2.0-2) over (3.1.1-2) ...
260s Preparing to unpack .../07-libblockdev-mdraid3_3.2.0-2_s390x.deb ...
260s Unpacking libblockdev-mdraid3:s390x (3.2.0-2) over (3.1.1-2) ...
260s Preparing to unpack .../08-libblockdev-nvme3_3.2.0-2_s390x.deb ...
260s Unpacking libblockdev-nvme3:s390x (3.2.0-2) over (3.1.1-2) ...
260s Preparing to unpack .../09-libblockdev-part3_3.2.0-2_s390x.deb ...
260s Unpacking libblockdev-part3:s390x (3.2.0-2) over (3.1.1-2) ...
260s Preparing to unpack .../10-libblockdev-swap3_3.2.0-2_s390x.deb ...
260s Unpacking libblockdev-swap3:s390x (3.2.0-2) over (3.1.1-2) ...
260s Preparing to unpack .../11-libblockdev3_3.2.0-2_s390x.deb ...
260s Unpacking libblockdev3:s390x (3.2.0-2) over (3.1.1-2) ...
260s Preparing to unpack .../12-libftdi1-2_1.5-7_s390x.deb ...
260s Unpacking libftdi1-2:s390x (1.5-7) over (1.5-6build5) ...
260s Preparing to unpack .../13-libinih1_58-1ubuntu1_s390x.deb ...
260s Unpacking libinih1:s390x (58-1ubuntu1) over (55-1ubuntu2) ...
260s Preparing to unpack .../14-python3-lazr.uri_1.0.6-4_all.deb ...
260s Unpacking python3-lazr.uri (1.0.6-4) over (1.0.6-3) ...
260s Setting up libpipeline1:s390x (1.5.8-1) ...
260s Setting up libinih1:s390x (58-1ubuntu1) ...
260s Setting up python3-lazr.uri (1.0.6-4) ...
260s Setting up libftdi1-2:s390x (1.5-7) ...
260s Setting up libblockdev-utils3:s390x (3.2.0-2) ...
260s Setting up libblockdev-nvme3:s390x (3.2.0-2) ...
260s Setting up nano (8.2-1) ...
260s Setting up libblockdev-fs3:s390x (3.2.0-2) ...
260s Setting up libevdev2:s390x (1.13.3+dfsg-1) ...
260s Setting up libblockdev-mdraid3:s390x (3.2.0-2) ...
260s Setting up libblockdev-crypto3:s390x (3.2.0-2) ...
260s Setting up libblockdev-swap3:s390x (3.2.0-2) ...
260s Setting up libblockdev-loop3:s390x (3.2.0-2) ...
260s Setting up libblockdev3:s390x (3.2.0-2) ...
260s Installing new version of config file /etc/libblockdev/3/conf.d/00-default.cfg ...
260s Setting up libblockdev-part3:s390x (3.2.0-2) ...
260s Processing triggers for libc-bin (2.40-1ubuntu3) ...
260s Processing triggers for man-db (2.12.1-3) ...
261s Processing triggers for install-info (7.1.1-1) ...
261s Reading package lists...
261s Building dependency tree...
261s Reading state information...
261s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
262s Hit:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease
262s Hit:2 http://ftpmaster.internal/ubuntu plucky InRelease
262s Hit:3 http://ftpmaster.internal/ubuntu plucky-updates InRelease
262s Hit:4 http://ftpmaster.internal/ubuntu plucky-security InRelease
263s Reading package lists...
263s Reading package lists...
263s Building dependency tree...
263s Reading state information...
263s Calculating upgrade...
263s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
263s Reading package lists...
263s Building dependency tree...
263s Reading state information...
263s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
271s Reading package lists...
272s Building dependency tree...
272s Reading state information...
272s Starting pkgProblemResolver with broken count: 0
272s Starting 2 pkgProblemResolver with broken count: 0
272s Done
272s The following additional packages will be installed:
272s   autodep8 dctrl-tools libbio-db-hts-perl libbio-perl-perl libdata-stag-perl
272s   libdeflate0 libhts3t64 libhtscodecs2 libio-string-perl pkg-perl-autopkgtest
272s Suggested packages:
272s   debtags bioperl libxml-sax-expatxs-perl
272s Recommended packages:
272s   bioperl-run | libbio-perl-run-perl libace-perl libalgorithm-munkres-perl
272s   libarray-compare-perl libbio-asn1-entrezgene-perl libclone-perl
272s   libconvert-binary-c-perl libdbd-sqlite3-perl libdbd-mysql-perl
272s   libdbd-pg-perl libgd-perl libgraph-perl libgraphviz-perl libhtml-parser-perl
272s   libhtml-tableextract-perl liblist-moreutils-perl libpostscript-perl
272s   libset-scalar-perl libsoap-lite-perl libsort-naturally-perl
272s   libspreadsheet-parseexcel-perl libspreadsheet-writeexcel-perl libsvg-perl
272s   libsvg-graph-perl liburi-perl libxml-dom-xpath-perl libxml-parser-perl
272s   libxml-sax-perl libxml-sax-writer-perl libxml-simple-perl libxml-twig-perl
272s   libxml-writer-perl libxml-libxml-perl libwww-perl perl-tk libgd-gd2-perl
272s   | libgd-gd2-noxpm-perl libxml-libxslt-perl libmldbm-perl libxml-perl
272s The following NEW packages will be installed:
272s   autodep8 autopkgtest-satdep dctrl-tools libbio-db-hts-perl libbio-perl-perl
272s   libdata-stag-perl libdeflate0 libhts3t64 libhtscodecs2 libio-string-perl
272s   pkg-perl-autopkgtest
272s 0 upgraded, 11 newly installed, 0 to remove and 0 not upgraded.
272s Need to get 3853 kB/3854 kB of archives.
272s After this operation, 11.9 MB of additional disk space will be used.
272s Get:1 /tmp/autopkgtest.SaUsEa/2-autopkgtest-satdep.deb autopkgtest-satdep s390x 0 [724 B]
272s Get:2 http://ftpmaster.internal/ubuntu plucky/main s390x dctrl-tools s390x 2.24-3build3 [106 kB]
272s Get:3 http://ftpmaster.internal/ubuntu plucky/main s390x autodep8 all 0.28+nmu1ubuntu1 [13.7 kB]
272s Get:4 http://ftpmaster.internal/ubuntu plucky/main s390x libdeflate0 s390x 1.21-1 [46.1 kB]
272s Get:5 http://ftpmaster.internal/ubuntu plucky/universe s390x libhtscodecs2 s390x 1.6.0-1build1 [87.0 kB]
272s Get:6 http://ftpmaster.internal/ubuntu plucky-proposed/universe s390x libhts3t64 s390x 1.20+ds-2 [474 kB]
272s Get:7 http://ftpmaster.internal/ubuntu plucky/main s390x libio-string-perl all 1.08-4 [11.1 kB]
272s Get:8 http://ftpmaster.internal/ubuntu plucky/universe s390x libdata-stag-perl all 0.14-3 [372 kB]
273s Get:9 http://ftpmaster.internal/ubuntu plucky/universe s390x libbio-perl-perl all 1.7.8-1 [2580 kB]
273s Get:10 http://ftpmaster.internal/ubuntu plucky/universe s390x libbio-db-hts-perl s390x 3.01-4build4 [145 kB]
273s Get:11 http://ftpmaster.internal/ubuntu plucky/universe s390x pkg-perl-autopkgtest all 0.79 [18.5 kB]
273s Fetched 3853 kB in 1s (5267 kB/s)
273s Selecting previously unselected package dctrl-tools.
273s (Reading database ... 
(Reading database ... 5%
(Reading database ... 10%
(Reading database ... 15%
(Reading database ... 20%
(Reading database ... 25%
(Reading database ... 30%
(Reading database ... 35%
(Reading database ... 40%
(Reading database ... 45%
(Reading database ... 50%
(Reading database ... 55%
(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 55483 files and directories currently installed.)
273s Preparing to unpack .../00-dctrl-tools_2.24-3build3_s390x.deb ...
273s Unpacking dctrl-tools (2.24-3build3) ...
273s Selecting previously unselected package autodep8.
273s Preparing to unpack .../01-autodep8_0.28+nmu1ubuntu1_all.deb ...
273s Unpacking autodep8 (0.28+nmu1ubuntu1) ...
273s Selecting previously unselected package libdeflate0:s390x.
273s Preparing to unpack .../02-libdeflate0_1.21-1_s390x.deb ...
273s Unpacking libdeflate0:s390x (1.21-1) ...
273s Selecting previously unselected package libhtscodecs2:s390x.
273s Preparing to unpack .../03-libhtscodecs2_1.6.0-1build1_s390x.deb ...
273s Unpacking libhtscodecs2:s390x (1.6.0-1build1) ...
273s Selecting previously unselected package libhts3t64:s390x.
273s Preparing to unpack .../04-libhts3t64_1.20+ds-2_s390x.deb ...
273s Unpacking libhts3t64:s390x (1.20+ds-2) ...
273s Selecting previously unselected package libio-string-perl.
273s Preparing to unpack .../05-libio-string-perl_1.08-4_all.deb ...
273s Unpacking libio-string-perl (1.08-4) ...
273s Selecting previously unselected package libdata-stag-perl.
273s Preparing to unpack .../06-libdata-stag-perl_0.14-3_all.deb ...
273s Unpacking libdata-stag-perl (0.14-3) ...
273s Selecting previously unselected package libbio-perl-perl.
273s Preparing to unpack .../07-libbio-perl-perl_1.7.8-1_all.deb ...
273s Unpacking libbio-perl-perl (1.7.8-1) ...
273s Selecting previously unselected package libbio-db-hts-perl.
273s Preparing to unpack .../08-libbio-db-hts-perl_3.01-4build4_s390x.deb ...
273s Unpacking libbio-db-hts-perl (3.01-4build4) ...
273s Selecting previously unselected package pkg-perl-autopkgtest.
273s Preparing to unpack .../09-pkg-perl-autopkgtest_0.79_all.deb ...
273s Unpacking pkg-perl-autopkgtest (0.79) ...
273s Selecting previously unselected package autopkgtest-satdep.
273s Preparing to unpack .../10-2-autopkgtest-satdep.deb ...
273s Unpacking autopkgtest-satdep (0) ...
273s Setting up libhtscodecs2:s390x (1.6.0-1build1) ...
273s Setting up libdeflate0:s390x (1.21-1) ...
273s Setting up libio-string-perl (1.08-4) ...
273s Setting up libdata-stag-perl (0.14-3) ...
273s Setting up libhts3t64:s390x (1.20+ds-2) ...
273s Setting up libbio-perl-perl (1.7.8-1) ...
273s Setting up dctrl-tools (2.24-3build3) ...
273s Setting up autodep8 (0.28+nmu1ubuntu1) ...
273s Setting up libbio-db-hts-perl (3.01-4build4) ...
273s Setting up pkg-perl-autopkgtest (0.79) ...
273s Setting up autopkgtest-satdep (0) ...
273s Processing triggers for man-db (2.12.1-3) ...
274s Processing triggers for libc-bin (2.40-1ubuntu3) ...
276s (Reading database ... 56836 files and directories currently installed.)
276s Removing autopkgtest-satdep (0) ...
278s autopkgtest [15:55:23]: test autodep8-perl: /usr/share/pkg-perl-autopkgtest/runner runtime-deps
278s autopkgtest [15:55:23]: test autodep8-perl: [-----------------------
278s /usr/share/pkg-perl-autopkgtest/runtime-deps.d/use.t .. 
278s 1..4
278s ok 1 -  /usr/bin/perl -w -M"Bio::DB::HTS" -e 1 2>&1 exited successfully
278s ok 2 -  /usr/bin/perl -w -M"Bio::DB::HTS" -e 1 2>&1 produced no (non-whitelisted) output
278s ok 3 - env PERL_DL_NONLAZY=1  /usr/bin/perl -w -M"Bio::DB::HTS" -e 1 2>&1 exited successfully
278s ok 4 - env PERL_DL_NONLAZY=1  /usr/bin/perl -w -M"Bio::DB::HTS" -e 1 2>&1 produced no (non-whitelisted) output
278s ok
278s All tests successful.
278s Files=1, Tests=4,  0 wallclock secs ( 0.01 usr  0.00 sys +  0.17 cusr  0.02 csys =  0.20 CPU)
278s Result: PASS
279s autopkgtest [15:55:24]: test autodep8-perl: -----------------------]
279s autodep8-perl        PASS (superficial)
279s autopkgtest [15:55:24]: test autodep8-perl:  - - - - - - - - - - results - - - - - - - - - -
279s autopkgtest [15:55:24]: test autodep8-perl-recommends: preparing testbed
285s Reading package lists...
285s Building dependency tree...
285s Reading state information...
285s Starting pkgProblemResolver with broken count: 0
285s Starting 2 pkgProblemResolver with broken count: 0
285s Done
285s The following NEW packages will be installed:
285s   autopkgtest-satdep
285s 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded.
285s Need to get 0 B/724 B of archives.
285s After this operation, 0 B of additional disk space will be used.
285s Get:1 /tmp/autopkgtest.SaUsEa/3-autopkgtest-satdep.deb autopkgtest-satdep s390x 0 [724 B]
286s Selecting previously unselected package autopkgtest-satdep.
286s (Reading database ... 
(Reading database ... 5%
(Reading database ... 10%
(Reading database ... 15%
(Reading database ... 20%
(Reading database ... 25%
(Reading database ... 30%
(Reading database ... 35%
(Reading database ... 40%
(Reading database ... 45%
(Reading database ... 50%
(Reading database ... 55%
(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 56836 files and directories currently installed.)
286s Preparing to unpack .../3-autopkgtest-satdep.deb ...
286s Unpacking autopkgtest-satdep (0) ...
286s Setting up autopkgtest-satdep (0) ...
287s (Reading database ... 56836 files and directories currently installed.)
287s Removing autopkgtest-satdep (0) ...
288s autopkgtest [15:55:33]: test autodep8-perl-recommends: /usr/share/pkg-perl-autopkgtest/runner runtime-deps-and-recommends
288s autopkgtest [15:55:33]: test autodep8-perl-recommends: [-----------------------
289s /usr/share/pkg-perl-autopkgtest/runtime-deps-and-recommends.d/syntax.t .. 
289s 1..4
289s ok 1 - Package libbio-db-hts-perl is known to dpkg
289s ok 2 - Got status information for package libbio-db-hts-perl
289s ok 3 - Got file list for package libbio-db-hts-perl
289s # Subtest: all modules in libbio-db-hts-perl pass the syntax check
289s     1..22
289s     ok 1 - /usr/bin/perl -wc /usr/lib/s390x-linux-gnu/perl5/5.40/Bio/DB/HTS/AlignWrapper.pm exited successfully
289s     # Subroutine each_tag_value redefined at /usr/lib/s390x-linux-gnu/perl5/5.40/Bio/DB/HTS/Alignment.pm line 461.
289s     # Subroutine get_tag_values redefined at /usr/lib/s390x-linux-gnu/perl5/5.40/Bio/DB/HTS/Alignment.pm line 463.
289s     # Subroutine has_tag redefined at /usr/lib/s390x-linux-gnu/perl5/5.40/Bio/DB/HTS/Alignment.pm line 479.
289s     # Subroutine get_all_tags redefined at /usr/lib/s390x-linux-gnu/perl5/5.40/Bio/DB/HTS/Alignment.pm line 495.
289s     # Subroutine start redefined at /usr/lib/s390x-linux-gnu/perl5/5.40/Bio/DB/HTS/Alignment.pm line 502.
289s     # Subroutine end redefined at /usr/lib/s390x-linux-gnu/perl5/5.40/Bio/DB/HTS/Alignment.pm line 508.
289s     # Subroutine stop redefined at /usr/lib/s390x-linux-gnu/perl5/5.40/Bio/DB/HTS/Alignment.pm line 514.
289s     # Subroutine strand redefined at /usr/lib/s390x-linux-gnu/perl5/5.40/Bio/DB/HTS/Alignment.pm line 517.
289s     # Subroutine abs_strand redefined at /usr/lib/s390x-linux-gnu/perl5/5.40/Bio/DB/HTS/Alignment.pm line 521.
289s     # Subroutine mstrand redefined at /usr/lib/s390x-linux-gnu/perl5/5.40/Bio/DB/HTS/Alignment.pm line 523.
289s     # Subroutine display_name redefined at /usr/lib/s390x-linux-gnu/perl5/5.40/Bio/DB/HTS/Alignment.pm line 528.
289s     # Subroutine qscore redefined at /usr/lib/s390x-linux-gnu/perl5/5.40/Bio/DB/HTS/Alignment.pm line 532.
289s     # Subroutine qstring redefined at /usr/lib/s390x-linux-gnu/perl5/5.40/Bio/DB/HTS/Alignment.pm line 539.
289s     # Subroutine primary_id redefined at /usr/lib/s390x-linux-gnu/perl5/5.40/Bio/DB/HTS/Alignment.pm line 543.
289s     # Subroutine cigar_str redefined at /usr/lib/s390x-linux-gnu/perl5/5.40/Bio/DB/HTS/Alignment.pm line 550.
289s     # Subroutine cigar_array redefined at /usr/lib/s390x-linux-gnu/perl5/5.40/Bio/DB/HTS/Alignment.pm line 563.
289s     # Subroutine flag_str redefined at /usr/lib/s390x-linux-gnu/perl5/5.40/Bio/DB/HTS/Alignment.pm line 577.
289s     # Subroutine length redefined at /usr/lib/s390x-linux-gnu/perl5/5.40/Bio/DB/HTS/Alignment.pm line 586.
289s     # Subroutine mate_start redefined at /usr/lib/s390x-linux-gnu/perl5/5.40/Bio/DB/HTS/Alignment.pm line 593.
289s     # Subroutine mate_len redefined at /usr/lib/s390x-linux-gnu/perl5/5.40/Bio/DB/HTS/Alignment.pm line 599.
289s     # Subroutine mate_end redefined at /usr/lib/s390x-linux-gnu/perl5/5.40/Bio/DB/HTS/Alignment.pm line 618.
289s     # Subroutine query redefined at /usr/lib/s390x-linux-gnu/perl5/5.40/Bio/DB/HTS/Alignment.pm line 624.
289s     # Subroutine get_SeqFeatures redefined at /usr/lib/s390x-linux-gnu/perl5/5.40/Bio/DB/HTS/Alignment.pm line 629.
289s     # Subroutine target redefined at /usr/lib/s390x-linux-gnu/perl5/5.40/Bio/DB/HTS/Alignment.pm line 633.
289s     # Subroutine primary_tag redefined at /usr/lib/s390x-linux-gnu/perl5/5.40/Bio/DB/HTS/Alignment.pm line 638.
289s     # Subroutine source_tag redefined at /usr/lib/s390x-linux-gnu/perl5/5.40/Bio/DB/HTS/Alignment.pm line 639.
289s     # Subroutine hit redefined at /usr/lib/s390x-linux-gnu/perl5/5.40/Bio/DB/HTS/Alignment.pm line 641.
289s     ok 2 - /usr/bin/perl -wc /usr/lib/s390x-linux-gnu/perl5/5.40/Bio/DB/HTS/Alignment.pm exited successfully
289s     ok 3 - /usr/bin/perl -wc /usr/lib/s390x-linux-gnu/perl5/5.40/Bio/DB/HTS/Constants.pm exited successfully
289s     ok 4 - /usr/bin/perl -wc /usr/lib/s390x-linux-gnu/perl5/5.40/Bio/DB/HTS/Faidx.pm exited successfully
289s     ok 5 - /usr/bin/perl -wc /usr/lib/s390x-linux-gnu/perl5/5.40/Bio/DB/HTS/FetchIterator.pm exited successfully
289s     ok 6 - /usr/bin/perl -wc /usr/lib/s390x-linux-gnu/perl5/5.40/Bio/DB/HTS/Kseq/Record.pm exited successfully
289s     ok 7 - /usr/bin/perl -wc /usr/lib/s390x-linux-gnu/perl5/5.40/Bio/DB/HTS/Kseq.pm exited successfully
289s     ok 8 - /usr/bin/perl -wc /usr/lib/s390x-linux-gnu/perl5/5.40/Bio/DB/HTS/Pileup.pm exited successfully
289s     ok 9 - /usr/bin/perl -wc /usr/lib/s390x-linux-gnu/perl5/5.40/Bio/DB/HTS/PileupWrapper.pm exited successfully
289s     # Constant subroutine Bio::DB::HTS::Query::CIGAR_SKIP redefined at /usr/lib/s390x-linux-gnu/perl-base/constant.pm line 171.
289s     # Subroutine new redefined at /usr/lib/s390x-linux-gnu/perl5/5.40/Bio/DB/HTS/Query.pm line 64.
289s     # Subroutine seq_id redefined at /usr/lib/s390x-linux-gnu/perl5/5.40/Bio/DB/HTS/Query.pm line 76.
289s     # Subroutine name redefined at /usr/lib/s390x-linux-gnu/perl5/5.40/Bio/DB/HTS/Query.pm line 87.
289s     # Subroutine display_name redefined at /usr/lib/s390x-linux-gnu/perl5/5.40/Bio/DB/HTS/Query.pm line 98.
289s     # Subroutine primary_tag redefined at /usr/lib/s390x-linux-gnu/perl5/5.40/Bio/DB/HTS/Query.pm line 106.
289s     # Subroutine source_tag redefined at /usr/lib/s390x-linux-gnu/perl5/5.40/Bio/DB/HTS/Query.pm line 114.
289s     # Subroutine start redefined at /usr/lib/s390x-linux-gnu/perl5/5.40/Bio/DB/HTS/Query.pm line 122.
289s     # Subroutine end redefined at /usr/lib/s390x-linux-gnu/perl5/5.40/Bio/DB/HTS/Query.pm line 133.
289s     # Subroutine low redefined at /usr/lib/s390x-linux-gnu/perl5/5.40/Bio/DB/HTS/Query.pm line 138.
289s     # Subroutine high redefined at /usr/lib/s390x-linux-gnu/perl5/5.40/Bio/DB/HTS/Query.pm line 150.
289s     # Subroutine length redefined at /usr/lib/s390x-linux-gnu/perl5/5.40/Bio/DB/HTS/Query.pm line 171.
289s     # Subroutine seq redefined at /usr/lib/s390x-linux-gnu/perl5/5.40/Bio/DB/HTS/Query.pm line 184.
289s     # Subroutine qscore redefined at /usr/lib/s390x-linux-gnu/perl5/5.40/Bio/DB/HTS/Query.pm line 198.
289s     # Subroutine dna redefined at /usr/lib/s390x-linux-gnu/perl5/5.40/Bio/DB/HTS/Query.pm line 210.
289s     # Subroutine strand redefined at /usr/lib/s390x-linux-gnu/perl5/5.40/Bio/DB/HTS/Query.pm line 221.
289s     # Subroutine subseq redefined at /usr/lib/s390x-linux-gnu/perl5/5.40/Bio/DB/HTS/Query.pm line 233.
289s     ok 10 - /usr/bin/perl -wc /usr/lib/s390x-linux-gnu/perl5/5.40/Bio/DB/HTS/Query.pm exited successfully
289s     ok 11 - /usr/bin/perl -wc /usr/lib/s390x-linux-gnu/perl5/5.40/Bio/DB/HTS/ReadIterator.pm exited successfully
289s     # Name "Bio::DB::HTS::Segment::sourceseq" used only once: possible typo at /usr/lib/s390x-linux-gnu/perl5/5.40/Bio/DB/HTS/Segment.pm line 70.
289s     # Name "Bio::DB::HTS::Segment::abs_ref" used only once: possible typo at /usr/lib/s390x-linux-gnu/perl5/5.40/Bio/DB/HTS/Segment.pm line 70.
289s     # Name "Bio::DB::HTS::Segment::ref" used only once: possible typo at /usr/lib/s390x-linux-gnu/perl5/5.40/Bio/DB/HTS/Segment.pm line 70.
289s     ok 12 - /usr/bin/perl -wc /usr/lib/s390x-linux-gnu/perl5/5.40/Bio/DB/HTS/Segment.pm exited successfully
289s     ok 13 - /usr/bin/perl -wc /usr/lib/s390x-linux-gnu/perl5/5.40/Bio/DB/HTS/Tabix/Iterator.pm exited successfully
289s     ok 14 - /usr/bin/perl -wc /usr/lib/s390x-linux-gnu/perl5/5.40/Bio/DB/HTS/Tabix.pm exited successfully
289s     # Subroutine dna redefined at /usr/lib/s390x-linux-gnu/perl5/5.40/Bio/DB/HTS/Target.pm line 43.
289s     # Subroutine qscore redefined at /usr/lib/s390x-linux-gnu/perl5/5.40/Bio/DB/HTS/Target.pm line 49.
289s     # Subroutine start redefined at /usr/lib/s390x-linux-gnu/perl5/5.40/Bio/DB/HTS/Target.pm line 56.
289s     # Subroutine end redefined at /usr/lib/s390x-linux-gnu/perl5/5.40/Bio/DB/HTS/Target.pm line 61.
289s     # Subroutine reversec redefined at /usr/lib/s390x-linux-gnu/perl5/5.40/Bio/DB/HTS/Target.pm line 68.
289s     ok 15 - /usr/bin/perl -wc /usr/lib/s390x-linux-gnu/perl5/5.40/Bio/DB/HTS/Target.pm exited successfully
289s     ok 16 - /usr/bin/perl -wc /usr/lib/s390x-linux-gnu/perl5/5.40/Bio/DB/HTS/VCF/Header.pm exited successfully
289s     ok 17 - /usr/bin/perl -wc /usr/lib/s390x-linux-gnu/perl5/5.40/Bio/DB/HTS/VCF/HeaderPtr.pm exited successfully
289s     ok 18 - /usr/bin/perl -wc /usr/lib/s390x-linux-gnu/perl5/5.40/Bio/DB/HTS/VCF/Iterator.pm exited successfully
289s     ok 19 - /usr/bin/perl -wc /usr/lib/s390x-linux-gnu/perl5/5.40/Bio/DB/HTS/VCF/Row.pm exited successfully
289s     ok 20 - /usr/bin/perl -wc /usr/lib/s390x-linux-gnu/perl5/5.40/Bio/DB/HTS/VCF/RowPtr.pm exited successfully
289s     ok 21 - /usr/bin/perl -wc /usr/lib/s390x-linux-gnu/perl5/5.40/Bio/DB/HTS/VCF.pm exited successfully
289s     # Constant subroutine Bio::DB::HTS::DUMP_INTERVAL redefined at /usr/lib/s390x-linux-gnu/perl-base/constant.pm line 171.
289s     # Subroutine new redefined at /usr/lib/s390x-linux-gnu/perl5/5.40/Bio/DB/HTS.pm line 1375.
289s     # Subroutine hts_file redefined at /usr/lib/s390x-linux-gnu/perl5/5.40/Bio/DB/HTS.pm line 1409.
289s     # Subroutine clone redefined at /usr/lib/s390x-linux-gnu/perl5/5.40/Bio/DB/HTS.pm line 1412.
289s     # Subroutine header redefined at /usr/lib/s390x-linux-gnu/perl5/5.40/Bio/DB/HTS.pm line 1420.
289s     # Subroutine hts_path redefined at /usr/lib/s390x-linux-gnu/perl5/5.40/Bio/DB/HTS.pm line 1426.
289s     # Subroutine fai redefined at /usr/lib/s390x-linux-gnu/perl5/5.40/Bio/DB/HTS.pm line 1431.
289s     # Subroutine new_dna_accessor redefined at /usr/lib/s390x-linux-gnu/perl5/5.40/Bio/DB/HTS.pm line 1433.
289s     # Subroutine can_do_seq redefined at /usr/lib/s390x-linux-gnu/perl5/5.40/Bio/DB/HTS.pm line 1455.
289s     # Subroutine seq redefined at /usr/lib/s390x-linux-gnu/perl5/5.40/Bio/DB/HTS.pm line 1462.
289s     # Subroutine expand_flags redefined at /usr/lib/s390x-linux-gnu/perl5/5.40/Bio/DB/HTS.pm line 1473.
289s     # Subroutine split_splices redefined at /usr/lib/s390x-linux-gnu/perl5/5.40/Bio/DB/HTS.pm line 1480.
289s     # Subroutine autoindex redefined at /usr/lib/s390x-linux-gnu/perl5/5.40/Bio/DB/HTS.pm line 1487.
289s     # Subroutine force_refseq redefined at /usr/lib/s390x-linux-gnu/perl5/5.40/Bio/DB/HTS.pm line 1494.
289s     # Subroutine n_targets redefined at /usr/lib/s390x-linux-gnu/perl5/5.40/Bio/DB/HTS.pm line 1501.
289s     # Subroutine target_name redefined at /usr/lib/s390x-linux-gnu/perl5/5.40/Bio/DB/HTS.pm line 1505.
289s     # Subroutine target_len redefined at /usr/lib/s390x-linux-gnu/perl5/5.40/Bio/DB/HTS.pm line 1512.
289s     # Subroutine seq_ids redefined at /usr/lib/s390x-linux-gnu/perl5/5.40/Bio/DB/HTS.pm line 1519.
289s     # Subroutine _cache_targets redefined at /usr/lib/s390x-linux-gnu/perl5/5.40/Bio/DB/HTS.pm line 1524.
289s     # Subroutine length redefined at /usr/lib/s390x-linux-gnu/perl5/5.40/Bio/DB/HTS.pm line 1535.
289s     # Subroutine _fetch redefined at /usr/lib/s390x-linux-gnu/perl5/5.40/Bio/DB/HTS.pm line 1541.
289s     # Subroutine fetch redefined at /usr/lib/s390x-linux-gnu/perl5/5.40/Bio/DB/HTS.pm line 1554.
289s     # Subroutine pileup redefined at /usr/lib/s390x-linux-gnu/perl5/5.40/Bio/DB/HTS.pm line 1566.
289s     # Subroutine fast_pileup redefined at /usr/lib/s390x-linux-gnu/perl5/5.40/Bio/DB/HTS.pm line 1588.
289s     # Subroutine segment redefined at /usr/lib/s390x-linux-gnu/perl5/5.40/Bio/DB/HTS.pm line 1611.
289s     # Subroutine get_features_by_location redefined at /usr/lib/s390x-linux-gnu/perl5/5.40/Bio/DB/HTS.pm line 1636.
289s     # Subroutine get_features_by_attribute redefined at /usr/lib/s390x-linux-gnu/perl5/5.40/Bio/DB/HTS.pm line 1652.
289s     # Subroutine get_features_by_tag redefined at /usr/lib/s390x-linux-gnu/perl5/5.40/Bio/DB/HTS.pm line 1658.
289s     # Subroutine get_features_by_flag redefined at /usr/lib/s390x-linux-gnu/perl5/5.40/Bio/DB/HTS.pm line 1662.
289s     # Subroutine get_feature_by_name redefined at /usr/lib/s390x-linux-gnu/perl5/5.40/Bio/DB/HTS.pm line 1666.
289s     # Subroutine get_features_by_name redefined at /usr/lib/s390x-linux-gnu/perl5/5.40/Bio/DB/HTS.pm line 1678.
289s     # Subroutine get_feature_by_id redefined at /usr/lib/s390x-linux-gnu/perl5/5.40/Bio/DB/HTS.pm line 1680.
289s     # Subroutine get_seq_stream redefined at /usr/lib/s390x-linux-gnu/perl5/5.40/Bio/DB/HTS.pm line 1698.
289s     # Subroutine get_seq_fh redefined at /usr/lib/s390x-linux-gnu/perl5/5.40/Bio/DB/HTS.pm line 1703.
289s     # Subroutine types redefined at /usr/lib/s390x-linux-gnu/perl5/5.40/Bio/DB/HTS.pm line 1708.
289s     # Subroutine features redefined at /usr/lib/s390x-linux-gnu/perl5/5.40/Bio/DB/HTS.pm line 1712.
289s     # Subroutine coverage2BedGraph redefined at /usr/lib/s390x-linux-gnu/perl5/5.40/Bio/DB/HTS.pm line 1816.
289s     # Subroutine _filter_features redefined at /usr/lib/s390x-linux-gnu/perl5/5.40/Bio/DB/HTS.pm line 1860.
289s     # Subroutine _push_features redefined at /usr/lib/s390x-linux-gnu/perl5/5.40/Bio/DB/HTS.pm line 1904.
289s     # Subroutine last_feature_count redefined at /usr/lib/s390x-linux-gnu/perl5/5.40/Bio/DB/HTS.pm line 1928.
289s     # Subroutine _features redefined at /usr/lib/s390x-linux-gnu/perl5/5.40/Bio/DB/HTS.pm line 1930.
289s     # Subroutine _build_mates redefined at /usr/lib/s390x-linux-gnu/perl5/5.40/Bio/DB/HTS.pm line 1950.
289s     # Subroutine _coverage redefined at /usr/lib/s390x-linux-gnu/perl5/5.40/Bio/DB/HTS.pm line 2000.
289s     # Subroutine _segment_search redefined at /usr/lib/s390x-linux-gnu/perl5/5.40/Bio/DB/HTS.pm line 2038.
289s     # Subroutine hts_index redefined at /usr/lib/s390x-linux-gnu/perl5/5.40/Bio/DB/HTS.pm line 2053.
289s     # Subroutine _features_fh redefined at /usr/lib/s390x-linux-gnu/perl5/5.40/Bio/DB/HTS.pm line 2062.
289s     # Subroutine tam_fh redefined at /usr/lib/s390x-linux-gnu/perl5/5.40/Bio/DB/HTS.pm line 2076.
289s     # Subroutine max_pileup_cnt redefined at /usr/lib/s390x-linux-gnu/perl5/5.40/Bio/DB/HTS.pm line 2081.
289s     # Subroutine _filter_by_name redefined at /usr/lib/s390x-linux-gnu/perl5/5.40/Bio/DB/HTS.pm line 2088.
289s     # Subroutine _filter_by_attribute redefined at /usr/lib/s390x-linux-gnu/perl5/5.40/Bio/DB/HTS.pm line 2104.
289s     # Subroutine _glob_match redefined at /usr/lib/s390x-linux-gnu/perl5/5.40/Bio/DB/HTS.pm line 2132.
289s     # Subroutine open redefined at /usr/lib/s390x-linux-gnu/perl5/5.40/Bio/DB/HTS.pm line 2146.
289s     # Subroutine seq redefined at /usr/lib/s390x-linux-gnu/perl5/5.40/Bio/DB/HTS.pm line 2148.
289s     # Subroutine coverage redefined at /usr/lib/s390x-linux-gnu/perl5/5.40/Bio/DB/HTS.pm line 2163.
289s     # Subroutine source redefined at /usr/lib/s390x-linux-gnu/perl5/5.40/Bio/DB/HTS.pm line 2169.
289s     # Subroutine method redefined at /usr/lib/s390x-linux-gnu/perl5/5.40/Bio/DB/HTS.pm line 2176.
289s     # Subroutine gff3_string redefined at /usr/lib/s390x-linux-gnu/perl5/5.40/Bio/DB/HTS.pm line 2183.
289s     # Subroutine index redefined at /usr/lib/s390x-linux-gnu/perl5/5.40/Bio/DB/HTS.pm line 2199.
289s     # Ambiguous call resolved as CORE::open(), qualify as such or use & at /usr/lib/s390x-linux-gnu/perl5/5.40/Bio/DB/HTS.pm line 2238.
289s     # Ambiguous call resolved as CORE::open(), qualify as such or use & at /usr/lib/s390x-linux-gnu/perl5/5.40/Bio/DB/HTS.pm line 2243.
289s     # Subroutine reindex redefined at /usr/lib/s390x-linux-gnu/perl5/5.40/Bio/DB/HTS.pm line 2230.
289s     # Subroutine index_open_in_safewd redefined at /usr/lib/s390x-linux-gnu/perl5/5.40/Bio/DB/HTS.pm line 2269.
289s     # Subroutine mtime redefined at /usr/lib/s390x-linux-gnu/perl5/5.40/Bio/DB/HTS.pm line 2280.
289s     ok 22 - /usr/bin/perl -wc /usr/lib/s390x-linux-gnu/perl5/5.40/Bio/DB/HTS.pm exited successfully
289s ok 4 - all modules in libbio-db-hts-perl pass the syntax check
289s ok
289s All tests successful.
289s Files=1, Tests=4,  1 wallclock secs ( 0.01 usr  0.00 sys +  0.75 cusr  0.10 csys =  0.86 CPU)
289s Result: PASS
289s autopkgtest [15:55:34]: test autodep8-perl-recommends: -----------------------]
290s autodep8-perl-recommends PASS (superficial)
290s autopkgtest [15:55:35]: test autodep8-perl-recommends:  - - - - - - - - - - results - - - - - - - - - -
290s autopkgtest [15:55:35]: @@@@@@@@@@@@@@@@@@@@ summary
290s autodep8-perl-build-deps PASS
290s autodep8-perl        PASS (superficial)
290s autodep8-perl-recommends PASS (superficial)
301s nova [W] Using flock in prodstack6-s390x
301s flock: timeout while waiting to get lock
301s Creating nova instance adt-plucky-s390x-libbio-db-hts-perl-20241102-152630-juju-7f2275-prod-proposed-migration-environment-15-af4ae234-54af-4d72-a36c-a31650781462 from image adt/ubuntu-plucky-s390x-server-20241101.img (UUID efc880a6-ff20-4207-a161-b1113fd9bea7)...
301s nova [W] Using flock in prodstack6-s390x
301s Creating nova instance adt-plucky-s390x-libbio-db-hts-perl-20241102-152630-juju-7f2275-prod-proposed-migration-environment-15-af4ae234-54af-4d72-a36c-a31650781462 from image adt/ubuntu-plucky-s390x-server-20241101.img (UUID efc880a6-ff20-4207-a161-b1113fd9bea7)...