0s autopkgtest [16:44:49]: starting date and time: 2025-01-16 16:44:49+0000 0s autopkgtest [16:44:49]: git checkout: 325255d2 Merge branch 'pin-any-arch' into 'ubuntu/production' 0s autopkgtest [16:44:49]: host juju-7f2275-prod-proposed-migration-environment-20; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.faxgtnqa/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:xorg-server --apt-upgrade jalview --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=xorg-server/2:21.1.15-2ubuntu2 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest-s390x --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-20@bos03-s390x-10.secgroup --name adt-plucky-s390x-jalview-20250116-164449-juju-7f2275-prod-proposed-migration-environment-20-bc11bdfb-f7b7-416d-9a48-6971bdc68633 --image adt/ubuntu-plucky-s390x-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-20 --net-id=net_prod-proposed-migration-s390x -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,keyserver.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com,radosgw.ps5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/ 113s autopkgtest [16:46:42]: testbed dpkg architecture: s390x 113s autopkgtest [16:46:42]: testbed apt version: 2.9.18 114s autopkgtest [16:46:43]: @@@@@@@@@@@@@@@@@@@@ test bed setup 114s autopkgtest [16:46:43]: testbed release detected to be: None 115s autopkgtest [16:46:44]: updating testbed package index (apt update) 115s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease [73.9 kB] 115s Hit:2 http://ftpmaster.internal/ubuntu plucky InRelease 115s Hit:3 http://ftpmaster.internal/ubuntu plucky-updates InRelease 115s Hit:4 http://ftpmaster.internal/ubuntu plucky-security InRelease 115s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/universe Sources [910 kB] 116s Get:6 http://ftpmaster.internal/ubuntu plucky-proposed/main Sources [166 kB] 116s Get:7 http://ftpmaster.internal/ubuntu plucky-proposed/restricted Sources [9708 B] 116s Get:8 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse Sources [14.7 kB] 116s Get:9 http://ftpmaster.internal/ubuntu plucky-proposed/main s390x Packages [280 kB] 116s Get:10 http://ftpmaster.internal/ubuntu plucky-proposed/restricted s390x Packages [756 B] 116s Get:11 http://ftpmaster.internal/ubuntu plucky-proposed/universe s390x Packages [979 kB] 116s Get:12 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse s390x Packages [4668 B] 116s Fetched 2439 kB in 1s (2434 kB/s) 117s Reading package lists... 117s Reading package lists... 117s Building dependency tree... 117s Reading state information... 117s Calculating upgrade... 118s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 118s Reading package lists... 118s Building dependency tree... 118s Reading state information... 118s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 118s autopkgtest [16:46:47]: upgrading testbed (apt dist-upgrade and autopurge) 118s Reading package lists... 118s Building dependency tree... 118s Reading state information... 119s Calculating upgrade...Starting pkgProblemResolver with broken count: 0 119s Starting 2 pkgProblemResolver with broken count: 0 119s Done 119s Entering ResolveByKeep 119s 120s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 120s Reading package lists... 120s Building dependency tree... 120s Reading state information... 120s Starting pkgProblemResolver with broken count: 0 120s Starting 2 pkgProblemResolver with broken count: 0 120s Done 120s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 122s autopkgtest [16:46:51]: testbed running kernel: Linux 6.11.0-8-generic #8-Ubuntu SMP Mon Sep 16 12:49:35 UTC 2024 123s autopkgtest [16:46:52]: @@@@@@@@@@@@@@@@@@@@ apt-source jalview 150s Get:1 http://ftpmaster.internal/ubuntu plucky/universe jalview 2.11.4.0+dfsg-3 (dsc) [2735 B] 150s Get:2 http://ftpmaster.internal/ubuntu plucky/universe jalview 2.11.4.0+dfsg-3 (tar) [343 MB] 150s Get:3 http://ftpmaster.internal/ubuntu plucky/universe jalview 2.11.4.0+dfsg-3 (diff) [62.7 kB] 151s gpgv: Signature made Sun Oct 6 07:42:24 2024 UTC 151s gpgv: using RSA key 33CB284313E90BD27DCB4523600316A6DC277476 151s gpgv: Can't check signature: No public key 151s dpkg-source: warning: cannot verify inline signature for ./jalview_2.11.4.0+dfsg-3.dsc: no acceptable signature found 161s autopkgtest [16:47:30]: testing package jalview version 2.11.4.0+dfsg-3 162s autopkgtest [16:47:31]: build not needed 180s autopkgtest [16:47:49]: test someCommandLineInvocations: preparing testbed 180s Reading package lists... 180s Building dependency tree... 180s Reading state information... 180s Starting pkgProblemResolver with broken count: 1 180s Starting 2 pkgProblemResolver with broken count: 1 180s Investigating (0) libhtsjdk-java:s390x < none -> 4.1.0+dfsg-2 @un puN Ib > 180s Broken libhtsjdk-java:s390x Depends on libcommons-jexl2-java:s390x < none | 2.1.1-6 @un uH > 180s Considering libcommons-jexl2-java:s390x 1 as a solution to libhtsjdk-java:s390x 0 180s Re-Instated libcommons-jexl2-java:s390x 180s Broken libhtsjdk-java:s390x Depends on libmjson-java:s390x < none | 1.4.0-3 @un uH > 180s Considering libmjson-java:s390x 1 as a solution to libhtsjdk-java:s390x 0 180s Re-Instated libmjson-java:s390x 180s Broken libhtsjdk-java:s390x Depends on libngs-java:s390x < none @un H > 180s Broken libhtsjdk-java:s390x Depends on librhino-java:s390x < none | 1.7.14-2.1 @un uH > 180s Considering librhino-java:s390x 1 as a solution to libhtsjdk-java:s390x 0 180s Re-Instated librhino-java:s390x 180s Done 180s Some packages could not be installed. This may mean that you have 180s requested an impossible situation or if you are using the unstable 180s distribution that some required packages have not yet been created 180s or been moved out of Incoming. 180s The following information may help to resolve the situation: 180s 180s The following packages have unmet dependencies: 180s libhtsjdk-java : Depends: libngs-java but it is not installable 180s E: Unable to correct problems, you have held broken packages. 180s autopkgtest: WARNING: Test dependencies are unsatisfiable with using apt pinning. Retrying with using all packages from plucky-proposed 181s Reading package lists... 181s Building dependency tree... 181s Reading state information... 181s Starting pkgProblemResolver with broken count: 1 181s Starting 2 pkgProblemResolver with broken count: 1 181s Investigating (0) libhtsjdk-java:s390x < none -> 4.1.3+dfsg-2 @un puN Ib > 181s Broken libhtsjdk-java:s390x Depends on libcommons-jexl2-java:s390x < none | 2.1.1-6 @un uH > 181s Considering libcommons-jexl2-java:s390x 1 as a solution to libhtsjdk-java:s390x 0 181s Re-Instated libcommons-jexl2-java:s390x 181s Broken libhtsjdk-java:s390x Depends on libjson-java:s390x < none | 3.1.0+dfsg-2 @un uH > 181s Considering libjson-java:s390x 1 as a solution to libhtsjdk-java:s390x 0 181s Re-Instated libcommons-collections3-java:s390x 181s Re-Instated libcommons-beanutils-java:s390x 181s Re-Instated libcommons-collections4-java:s390x 181s Re-Instated libezmorph-java:s390x 181s Re-Instated libxom-java:s390x 181s Re-Instated libjson-java:s390x 181s Broken libhtsjdk-java:s390x Depends on libngs-java:s390x < none @un H > 181s Broken libhtsjdk-java:s390x Depends on librhino-java:s390x < none | 1.7.15-1 @un uH > 181s Considering librhino-java:s390x 1 as a solution to libhtsjdk-java:s390x 0 181s Re-Instated librhino-java:s390x 181s Done 181s Some packages could not be installed. This may mean that you have 181s requested an impossible situation or if you are using the unstable 181s distribution that some required packages have not yet been created 181s or been moved out of Incoming. 181s The following information may help to resolve the situation: 181s 181s The following packages have unmet dependencies: 182s libhtsjdk-java : Depends: libngs-java but it is not installable 182s E: Unable to correct problems, you have held broken packages. 182s someCommandLineInvocations FAIL badpkg 182s blame: jalview 182s badpkg: Test dependencies are unsatisfiable. A common reason is that your testbed is out of date with respect to the archive, and you need to use a current testbed or run apt-get update or use -U. 182s autopkgtest [16:47:51]: test run-unit-test: preparing testbed 300s autopkgtest [16:49:49]: testbed dpkg architecture: s390x 301s autopkgtest [16:49:50]: testbed apt version: 2.9.18 301s autopkgtest [16:49:50]: @@@@@@@@@@@@@@@@@@@@ test bed setup 301s autopkgtest [16:49:50]: testbed release detected to be: plucky 302s autopkgtest [16:49:51]: updating testbed package index (apt update) 302s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease [73.9 kB] 302s Hit:2 http://ftpmaster.internal/ubuntu plucky InRelease 302s Hit:3 http://ftpmaster.internal/ubuntu plucky-updates InRelease 302s Hit:4 http://ftpmaster.internal/ubuntu plucky-security InRelease 303s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/main Sources [167 kB] 303s Get:6 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse Sources [14.7 kB] 303s Get:7 http://ftpmaster.internal/ubuntu plucky-proposed/universe Sources [908 kB] 303s Get:8 http://ftpmaster.internal/ubuntu plucky-proposed/restricted Sources [9708 B] 303s Get:9 http://ftpmaster.internal/ubuntu plucky-proposed/main s390x Packages [280 kB] 303s Get:10 http://ftpmaster.internal/ubuntu plucky-proposed/restricted s390x Packages [756 B] 303s Get:11 http://ftpmaster.internal/ubuntu plucky-proposed/universe s390x Packages [974 kB] 303s Get:12 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse s390x Packages [4668 B] 303s Fetched 2433 kB in 1s (2461 kB/s) 304s Reading package lists... 304s Reading package lists... 304s Building dependency tree... 304s Reading state information... 304s Calculating upgrade... 305s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 305s Reading package lists... 305s Building dependency tree... 305s Reading state information... 305s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 305s autopkgtest [16:49:54]: upgrading testbed (apt dist-upgrade and autopurge) 305s Reading package lists... 305s Building dependency tree... 305s Reading state information... 306s Calculating upgrade...Starting pkgProblemResolver with broken count: 0 306s Starting 2 pkgProblemResolver with broken count: 0 306s Done 306s Entering ResolveByKeep 306s 307s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 307s Reading package lists... 307s Building dependency tree... 307s Reading state information... 307s Starting pkgProblemResolver with broken count: 0 307s Starting 2 pkgProblemResolver with broken count: 0 307s Done 307s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 311s Reading package lists... 311s Building dependency tree... 311s Reading state information... 311s Starting pkgProblemResolver with broken count: 1 311s Starting 2 pkgProblemResolver with broken count: 1 311s Investigating (0) libhtsjdk-java:s390x < none -> 4.1.0+dfsg-2 @un puN Ib > 311s Broken libhtsjdk-java:s390x Depends on libcommons-jexl2-java:s390x < none | 2.1.1-6 @un uH > 311s Considering libcommons-jexl2-java:s390x 1 as a solution to libhtsjdk-java:s390x 0 311s Re-Instated libcommons-jexl2-java:s390x 311s Broken libhtsjdk-java:s390x Depends on libmjson-java:s390x < none | 1.4.0-3 @un uH > 311s Considering libmjson-java:s390x 1 as a solution to libhtsjdk-java:s390x 0 311s Re-Instated libmjson-java:s390x 311s Broken libhtsjdk-java:s390x Depends on libngs-java:s390x < none @un H > 311s Broken libhtsjdk-java:s390x Depends on librhino-java:s390x < none | 1.7.14-2.1 @un uH > 311s Considering librhino-java:s390x 1 as a solution to libhtsjdk-java:s390x 0 311s Re-Instated librhino-java:s390x 311s Done 311s Some packages could not be installed. This may mean that you have 311s requested an impossible situation or if you are using the unstable 311s distribution that some required packages have not yet been created 311s or been moved out of Incoming. 311s The following information may help to resolve the situation: 311s 311s The following packages have unmet dependencies: 311s libhtsjdk-java : Depends: libngs-java but it is not installable 311s E: Unable to correct problems, you have held broken packages. 311s autopkgtest: WARNING: Test dependencies are unsatisfiable with using apt pinning. Retrying with using all packages from plucky-proposed 312s Reading package lists... 312s Building dependency tree... 312s Reading state information... 312s Starting pkgProblemResolver with broken count: 1 312s Starting 2 pkgProblemResolver with broken count: 1 312s Investigating (0) libhtsjdk-java:s390x < none -> 4.1.3+dfsg-2 @un puN Ib > 312s Broken libhtsjdk-java:s390x Depends on libcommons-jexl2-java:s390x < none | 2.1.1-6 @un uH > 312s Considering libcommons-jexl2-java:s390x 1 as a solution to libhtsjdk-java:s390x 0 312s Re-Instated libcommons-jexl2-java:s390x 312s Broken libhtsjdk-java:s390x Depends on libjson-java:s390x < none | 3.1.0+dfsg-2 @un uH > 312s Considering libjson-java:s390x 1 as a solution to libhtsjdk-java:s390x 0 312s Re-Instated libcommons-collections3-java:s390x 312s Re-Instated libcommons-beanutils-java:s390x 312s Re-Instated libcommons-collections4-java:s390x 312s Re-Instated libezmorph-java:s390x 312s Re-Instated libxom-java:s390x 312s Re-Instated libjson-java:s390x 312s Broken libhtsjdk-java:s390x Depends on libngs-java:s390x < none @un H > 312s Broken libhtsjdk-java:s390x Depends on librhino-java:s390x < none | 1.7.15-1 @un uH > 312s Considering librhino-java:s390x 1 as a solution to libhtsjdk-java:s390x 0 312s Re-Instated librhino-java:s390x 312s Done 312s Some packages could not be installed. This may mean that you have 312s requested an impossible situation or if you are using the unstable 312s distribution that some required packages have not yet been created 312s or been moved out of Incoming. 312s The following information may help to resolve the situation: 312s 312s The following packages have unmet dependencies: 312s libhtsjdk-java : Depends: libngs-java but it is not installable 312s E: Unable to correct problems, you have held broken packages. 312s run-unit-test FAIL badpkg 312s blame: jalview 312s badpkg: Test dependencies are unsatisfiable. A common reason is that your testbed is out of date with respect to the archive, and you need to use a current testbed or run apt-get update or use -U. 312s autopkgtest [16:50:01]: @@@@@@@@@@@@@@@@@@@@ summary 312s someCommandLineInvocations FAIL badpkg 312s blame: jalview 312s badpkg: Test dependencies are unsatisfiable. A common reason is that your testbed is out of date with respect to the archive, and you need to use a current testbed or run apt-get update or use -U. 312s run-unit-test FAIL badpkg 312s blame: jalview 312s badpkg: Test dependencies are unsatisfiable. A common reason is that your testbed is out of date with respect to the archive, and you need to use a current testbed or run apt-get update or use -U. 329s nova [W] Using flock in prodstack6-s390x 329s Creating nova instance adt-plucky-s390x-jalview-20250116-164449-juju-7f2275-prod-proposed-migration-environment-20-bc11bdfb-f7b7-416d-9a48-6971bdc68633 from image adt/ubuntu-plucky-s390x-server-20250116.img (UUID e981a3af-6e9f-4d05-be37-4d186896cb71)... 329s nova [W] Timed out waiting for fc830b30-13e3-4060-b02c-c4236d28a377 to get deleted. 329s nova [W] Using flock in prodstack6-s390x 329s Creating nova instance adt-plucky-s390x-jalview-20250116-164449-juju-7f2275-prod-proposed-migration-environment-20-bc11bdfb-f7b7-416d-9a48-6971bdc68633 from image adt/ubuntu-plucky-s390x-server-20250116.img (UUID e981a3af-6e9f-4d05-be37-4d186896cb71)... 329s nova [W] Timed out waiting for 8d565dee-861a-42fc-b282-8078a62452c7 to get deleted.