0s autopkgtest [09:33:26]: starting date and time: 2024-11-26 09:33:26+0000 0s autopkgtest [09:33:26]: git checkout: 0acbae0a WIP show VirtSubproc stderr in real-time 0s autopkgtest [09:33:26]: host juju-7f2275-prod-proposed-migration-environment-2; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.53sogc48/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:astropy --apt-upgrade imexam --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=astropy/7.0.0-1 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest-s390x --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-2@bos03-s390x-17.secgroup --name adt-plucky-s390x-imexam-20241126-093325-juju-7f2275-prod-proposed-migration-environment-2-16e746c1-812a-4e71-ae16-401d433ce2d9 --image adt/ubuntu-plucky-s390x-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-2 --net-id=net_prod-proposed-migration-s390x -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,keyserver.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/ 113s autopkgtest [09:35:19]: testbed dpkg architecture: s390x 113s autopkgtest [09:35:19]: testbed apt version: 2.9.8 113s autopkgtest [09:35:19]: @@@@@@@@@@@@@@@@@@@@ test bed setup 114s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease [73.9 kB] 114s Get:2 http://ftpmaster.internal/ubuntu plucky-proposed/main Sources [58.7 kB] 114s Get:3 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse Sources [14.2 kB] 114s Get:4 http://ftpmaster.internal/ubuntu plucky-proposed/restricted Sources [9708 B] 114s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/universe Sources [811 kB] 115s Get:6 http://ftpmaster.internal/ubuntu plucky-proposed/main s390x Packages [72.8 kB] 115s Get:7 http://ftpmaster.internal/ubuntu plucky-proposed/restricted s390x Packages [928 B] 115s Get:8 http://ftpmaster.internal/ubuntu plucky-proposed/universe s390x Packages [622 kB] 115s Get:9 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse s390x Packages [6612 B] 115s Fetched 1669 kB in 1s (1944 kB/s) 115s Reading package lists... 117s Reading package lists... 117s Building dependency tree... 117s Reading state information... 117s Calculating upgrade... 118s The following package was automatically installed and is no longer required: 118s libsgutils2-1.46-2 118s Use 'sudo apt autoremove' to remove it. 118s The following NEW packages will be installed: 118s libsgutils2-1.48 118s The following packages will be upgraded: 118s apt apt-utils bash bpftrace curl debconf debconf-i18n distro-info 118s dracut-install gir1.2-girepository-2.0 gir1.2-glib-2.0 hostname init 118s init-system-helpers libapt-pkg6.0t64 libaudit-common libaudit1 118s libcurl3t64-gnutls libcurl4t64 libgirepository-1.0-1 libglib2.0-0t64 118s libglib2.0-data liblzma5 libpam-modules libpam-modules-bin libpam-runtime 118s libpam0g libplymouth5 libpolkit-agent-1-0 libpolkit-gobject-1-0 libselinux1 118s libsemanage-common libsemanage2 linux-base lto-disabled-list lxd-installer 118s openssh-client openssh-server openssh-sftp-server pinentry-curses plymouth 118s plymouth-theme-ubuntu-text python-apt-common python3-apt python3-blinker 118s python3-debconf python3-jsonschema-specifications python3-rpds-py 118s python3-yaml sg3-utils sg3-utils-udev vim-common vim-tiny xxd xz-utils 118s 55 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. 118s Need to get 14.8 MB of archives. 118s After this operation, 2349 kB of additional disk space will be used. 118s Get:1 http://ftpmaster.internal/ubuntu plucky/main s390x bash s390x 5.2.32-1ubuntu2 [845 kB] 118s Get:2 http://ftpmaster.internal/ubuntu plucky/main s390x hostname s390x 3.25 [11.2 kB] 118s Get:3 http://ftpmaster.internal/ubuntu plucky/main s390x init-system-helpers all 1.67ubuntu1 [39.1 kB] 118s Get:4 http://ftpmaster.internal/ubuntu plucky/main s390x liblzma5 s390x 5.6.3-1 [145 kB] 118s Get:5 http://ftpmaster.internal/ubuntu plucky/main s390x libapt-pkg6.0t64 s390x 2.9.14ubuntu1 [1091 kB] 118s Get:6 http://ftpmaster.internal/ubuntu plucky/main s390x apt s390x 2.9.14ubuntu1 [1375 kB] 118s Get:7 http://ftpmaster.internal/ubuntu plucky/main s390x apt-utils s390x 2.9.14ubuntu1 [215 kB] 118s Get:8 http://ftpmaster.internal/ubuntu plucky/main s390x libaudit-common all 1:4.0.2-2ubuntu1 [6578 B] 118s Get:9 http://ftpmaster.internal/ubuntu plucky/main s390x libaudit1 s390x 1:4.0.2-2ubuntu1 [52.5 kB] 118s Get:10 http://ftpmaster.internal/ubuntu plucky/main s390x debconf-i18n all 1.5.87ubuntu1 [204 kB] 118s Get:11 http://ftpmaster.internal/ubuntu plucky/main s390x python3-debconf all 1.5.87ubuntu1 [4156 B] 118s Get:12 http://ftpmaster.internal/ubuntu plucky/main s390x debconf all 1.5.87ubuntu1 [124 kB] 118s Get:13 http://ftpmaster.internal/ubuntu plucky/main s390x libpam0g s390x 1.5.3-7ubuntu4 [70.0 kB] 118s Get:14 http://ftpmaster.internal/ubuntu plucky/main s390x libselinux1 s390x 3.7-3ubuntu1 [85.2 kB] 118s Get:15 http://ftpmaster.internal/ubuntu plucky/main s390x libpam-modules-bin s390x 1.5.3-7ubuntu4 [56.2 kB] 118s Get:16 http://ftpmaster.internal/ubuntu plucky/main s390x libpam-modules s390x 1.5.3-7ubuntu4 [294 kB] 118s Get:17 http://ftpmaster.internal/ubuntu plucky/main s390x init s390x 1.67ubuntu1 [6428 B] 118s Get:18 http://ftpmaster.internal/ubuntu plucky/main s390x openssh-sftp-server s390x 1:9.9p1-3ubuntu2 [38.2 kB] 118s Get:19 http://ftpmaster.internal/ubuntu plucky/main s390x openssh-server s390x 1:9.9p1-3ubuntu2 [552 kB] 118s Get:20 http://ftpmaster.internal/ubuntu plucky/main s390x openssh-client s390x 1:9.9p1-3ubuntu2 [955 kB] 118s Get:21 http://ftpmaster.internal/ubuntu plucky/main s390x libpam-runtime all 1.5.3-7ubuntu4 [40.8 kB] 118s Get:22 http://ftpmaster.internal/ubuntu plucky/main s390x libsemanage-common all 3.7-2build1 [7186 B] 118s Get:23 http://ftpmaster.internal/ubuntu plucky/main s390x libsemanage2 s390x 3.7-2build1 [97.1 kB] 118s Get:24 http://ftpmaster.internal/ubuntu plucky/main s390x distro-info s390x 1.12 [20.0 kB] 119s Get:25 http://ftpmaster.internal/ubuntu plucky/main s390x gir1.2-girepository-2.0 s390x 1.82.0-2 [25.0 kB] 119s Get:26 http://ftpmaster.internal/ubuntu plucky/main s390x gir1.2-glib-2.0 s390x 2.82.2-3 [180 kB] 119s Get:27 http://ftpmaster.internal/ubuntu plucky/main s390x libglib2.0-0t64 s390x 2.82.2-3 [1575 kB] 119s Get:28 http://ftpmaster.internal/ubuntu plucky/main s390x libgirepository-1.0-1 s390x 1.82.0-2 [84.9 kB] 119s Get:29 http://ftpmaster.internal/ubuntu plucky/main s390x libglib2.0-data all 2.82.2-3 [51.7 kB] 119s Get:30 http://ftpmaster.internal/ubuntu plucky/main s390x python-apt-common all 2.9.0ubuntu2 [20.3 kB] 119s Get:31 http://ftpmaster.internal/ubuntu plucky/main s390x python3-apt s390x 2.9.0ubuntu2 [185 kB] 119s Get:32 http://ftpmaster.internal/ubuntu plucky/main s390x python3-yaml s390x 6.0.2-1build1 [188 kB] 119s Get:33 http://ftpmaster.internal/ubuntu plucky/main s390x vim-tiny s390x 2:9.1.0861-1ubuntu1 [664 kB] 119s Get:34 http://ftpmaster.internal/ubuntu plucky/main s390x vim-common all 2:9.1.0861-1ubuntu1 [395 kB] 119s Get:35 http://ftpmaster.internal/ubuntu plucky/main s390x xxd s390x 2:9.1.0861-1ubuntu1 [66.6 kB] 119s Get:36 http://ftpmaster.internal/ubuntu plucky/main s390x libplymouth5 s390x 24.004.60-2ubuntu4 [150 kB] 119s Get:37 http://ftpmaster.internal/ubuntu plucky/main s390x plymouth-theme-ubuntu-text s390x 24.004.60-2ubuntu4 [10.1 kB] 119s Get:38 http://ftpmaster.internal/ubuntu plucky/main s390x plymouth s390x 24.004.60-2ubuntu4 [144 kB] 119s Get:39 http://ftpmaster.internal/ubuntu plucky/main s390x xz-utils s390x 5.6.3-1 [273 kB] 119s Get:40 http://ftpmaster.internal/ubuntu plucky/main s390x bpftrace s390x 0.21.2-2ubuntu3 [1718 kB] 119s Get:41 http://ftpmaster.internal/ubuntu plucky/main s390x curl s390x 8.11.0-1ubuntu2 [249 kB] 119s Get:42 http://ftpmaster.internal/ubuntu plucky/main s390x libcurl4t64 s390x 8.11.0-1ubuntu2 [390 kB] 119s Get:43 http://ftpmaster.internal/ubuntu plucky/main s390x dracut-install s390x 105-2ubuntu2 [36.0 kB] 119s Get:44 http://ftpmaster.internal/ubuntu plucky/main s390x libcurl3t64-gnutls s390x 8.11.0-1ubuntu2 [386 kB] 119s Get:45 http://ftpmaster.internal/ubuntu plucky/main s390x libpolkit-agent-1-0 s390x 125-2ubuntu1 [17.3 kB] 119s Get:46 http://ftpmaster.internal/ubuntu plucky/main s390x libpolkit-gobject-1-0 s390x 125-2ubuntu1 [48.4 kB] 119s Get:47 http://ftpmaster.internal/ubuntu plucky/main s390x libsgutils2-1.48 s390x 1.48-0ubuntu1 [120 kB] 119s Get:48 http://ftpmaster.internal/ubuntu plucky/main s390x linux-base all 4.10.1ubuntu1 [34.8 kB] 119s Get:49 http://ftpmaster.internal/ubuntu plucky/main s390x lto-disabled-list all 54 [12.2 kB] 119s Get:50 http://ftpmaster.internal/ubuntu plucky/main s390x lxd-installer all 10 [5264 B] 119s Get:51 http://ftpmaster.internal/ubuntu plucky/main s390x pinentry-curses s390x 1.3.1-0ubuntu2 [42.3 kB] 119s Get:52 http://ftpmaster.internal/ubuntu plucky/main s390x python3-blinker all 1.9.0-1 [10.7 kB] 119s Get:53 http://ftpmaster.internal/ubuntu plucky/main s390x python3-rpds-py s390x 0.21.0-2ubuntu1 [368 kB] 119s Get:54 http://ftpmaster.internal/ubuntu plucky/main s390x python3-jsonschema-specifications all 2023.12.1-2 [9116 B] 119s Get:55 http://ftpmaster.internal/ubuntu plucky/main s390x sg3-utils s390x 1.48-0ubuntu1 [1027 kB] 119s Get:56 http://ftpmaster.internal/ubuntu plucky/main s390x sg3-utils-udev all 1.48-0ubuntu1 [6608 B] 120s Preconfiguring packages ... 120s Fetched 14.8 MB in 1s (10.5 MB/s) 120s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 55541 files and directories currently installed.) 120s Preparing to unpack .../bash_5.2.32-1ubuntu2_s390x.deb ... 120s Unpacking bash (5.2.32-1ubuntu2) over (5.2.32-1ubuntu1) ... 120s Setting up bash (5.2.32-1ubuntu2) ... 120s update-alternatives: using /usr/share/man/man7/bash-builtins.7.gz to provide /usr/share/man/man7/builtins.7.gz (builtins.7.gz) in auto mode 120s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 55541 files and directories currently installed.) 120s Preparing to unpack .../hostname_3.25_s390x.deb ... 120s Unpacking hostname (3.25) over (3.23+nmu2ubuntu2) ... 120s Setting up hostname (3.25) ... 120s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 55541 files and directories currently installed.) 120s Preparing to unpack .../init-system-helpers_1.67ubuntu1_all.deb ... 120s Unpacking init-system-helpers (1.67ubuntu1) over (1.66ubuntu1) ... 120s Setting up init-system-helpers (1.67ubuntu1) ... 120s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 55541 files and directories currently installed.) 120s Preparing to unpack .../liblzma5_5.6.3-1_s390x.deb ... 120s Unpacking liblzma5:s390x (5.6.3-1) over (5.6.2-2) ... 120s Setting up liblzma5:s390x (5.6.3-1) ... 120s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 55541 files and directories currently installed.) 120s Preparing to unpack .../libapt-pkg6.0t64_2.9.14ubuntu1_s390x.deb ... 120s Unpacking libapt-pkg6.0t64:s390x (2.9.14ubuntu1) over (2.9.8) ... 120s Setting up libapt-pkg6.0t64:s390x (2.9.14ubuntu1) ... 120s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 55541 files and directories currently installed.) 120s Preparing to unpack .../apt_2.9.14ubuntu1_s390x.deb ... 120s Unpacking apt (2.9.14ubuntu1) over (2.9.8) ... 120s Setting up apt (2.9.14ubuntu1) ... 121s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 55533 files and directories currently installed.) 121s Preparing to unpack .../apt-utils_2.9.14ubuntu1_s390x.deb ... 121s Unpacking apt-utils (2.9.14ubuntu1) over (2.9.8) ... 121s Preparing to unpack .../libaudit-common_1%3a4.0.2-2ubuntu1_all.deb ... 121s Unpacking libaudit-common (1:4.0.2-2ubuntu1) over (1:4.0.1-1ubuntu2) ... 121s Setting up libaudit-common (1:4.0.2-2ubuntu1) ... 121s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 55533 files and directories currently installed.) 121s Preparing to unpack .../libaudit1_1%3a4.0.2-2ubuntu1_s390x.deb ... 121s Unpacking libaudit1:s390x (1:4.0.2-2ubuntu1) over (1:4.0.1-1ubuntu2) ... 121s Setting up libaudit1:s390x (1:4.0.2-2ubuntu1) ... 121s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 55533 files and directories currently installed.) 121s Preparing to unpack .../debconf-i18n_1.5.87ubuntu1_all.deb ... 121s Unpacking debconf-i18n (1.5.87ubuntu1) over (1.5.86ubuntu1) ... 121s Preparing to unpack .../python3-debconf_1.5.87ubuntu1_all.deb ... 121s Unpacking python3-debconf (1.5.87ubuntu1) over (1.5.86ubuntu1) ... 121s Preparing to unpack .../debconf_1.5.87ubuntu1_all.deb ... 121s Unpacking debconf (1.5.87ubuntu1) over (1.5.86ubuntu1) ... 121s Setting up debconf (1.5.87ubuntu1) ... 121s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 55533 files and directories currently installed.) 121s Preparing to unpack .../libpam0g_1.5.3-7ubuntu4_s390x.deb ... 121s Unpacking libpam0g:s390x (1.5.3-7ubuntu4) over (1.5.3-7ubuntu2) ... 121s Setting up libpam0g:s390x (1.5.3-7ubuntu4) ... 121s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 55533 files and directories currently installed.) 121s Preparing to unpack .../libselinux1_3.7-3ubuntu1_s390x.deb ... 121s Unpacking libselinux1:s390x (3.7-3ubuntu1) over (3.5-2ubuntu5) ... 121s Setting up libselinux1:s390x (3.7-3ubuntu1) ... 121s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 55533 files and directories currently installed.) 121s Preparing to unpack .../libpam-modules-bin_1.5.3-7ubuntu4_s390x.deb ... 121s Unpacking libpam-modules-bin (1.5.3-7ubuntu4) over (1.5.3-7ubuntu2) ... 121s Setting up libpam-modules-bin (1.5.3-7ubuntu4) ... 122s pam_namespace.service is a disabled or a static unit not running, not starting it. 122s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 55533 files and directories currently installed.) 122s Preparing to unpack .../libpam-modules_1.5.3-7ubuntu4_s390x.deb ... 122s Unpacking libpam-modules:s390x (1.5.3-7ubuntu4) over (1.5.3-7ubuntu2) ... 122s Setting up libpam-modules:s390x (1.5.3-7ubuntu4) ... 122s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 55533 files and directories currently installed.) 122s Preparing to unpack .../init_1.67ubuntu1_s390x.deb ... 122s Unpacking init (1.67ubuntu1) over (1.66ubuntu1) ... 122s Preparing to unpack .../openssh-sftp-server_1%3a9.9p1-3ubuntu2_s390x.deb ... 122s Unpacking openssh-sftp-server (1:9.9p1-3ubuntu2) over (1:9.7p1-7ubuntu5) ... 122s Preparing to unpack .../openssh-server_1%3a9.9p1-3ubuntu2_s390x.deb ... 122s Unpacking openssh-server (1:9.9p1-3ubuntu2) over (1:9.7p1-7ubuntu5) ... 122s Preparing to unpack .../openssh-client_1%3a9.9p1-3ubuntu2_s390x.deb ... 122s Unpacking openssh-client (1:9.9p1-3ubuntu2) over (1:9.7p1-7ubuntu5) ... 122s Preparing to unpack .../libpam-runtime_1.5.3-7ubuntu4_all.deb ... 122s Unpacking libpam-runtime (1.5.3-7ubuntu4) over (1.5.3-7ubuntu2) ... 122s Setting up libpam-runtime (1.5.3-7ubuntu4) ... 122s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 55535 files and directories currently installed.) 122s Preparing to unpack .../libsemanage-common_3.7-2build1_all.deb ... 122s Unpacking libsemanage-common (3.7-2build1) over (3.5-1build6) ... 122s Setting up libsemanage-common (3.7-2build1) ... 122s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 55534 files and directories currently installed.) 122s Preparing to unpack .../libsemanage2_3.7-2build1_s390x.deb ... 122s Unpacking libsemanage2:s390x (3.7-2build1) over (3.5-1build6) ... 122s Setting up libsemanage2:s390x (3.7-2build1) ... 122s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 55534 files and directories currently installed.) 122s Preparing to unpack .../00-distro-info_1.12_s390x.deb ... 122s Unpacking distro-info (1.12) over (1.9) ... 122s Preparing to unpack .../01-gir1.2-girepository-2.0_1.82.0-2_s390x.deb ... 122s Unpacking gir1.2-girepository-2.0:s390x (1.82.0-2) over (1.80.1-4) ... 122s Preparing to unpack .../02-gir1.2-glib-2.0_2.82.2-3_s390x.deb ... 122s Unpacking gir1.2-glib-2.0:s390x (2.82.2-3) over (2.82.1-0ubuntu1) ... 122s Preparing to unpack .../03-libglib2.0-0t64_2.82.2-3_s390x.deb ... 122s Unpacking libglib2.0-0t64:s390x (2.82.2-3) over (2.82.1-0ubuntu1) ... 122s Preparing to unpack .../04-libgirepository-1.0-1_1.82.0-2_s390x.deb ... 122s Unpacking libgirepository-1.0-1:s390x (1.82.0-2) over (1.80.1-4) ... 122s Preparing to unpack .../05-libglib2.0-data_2.82.2-3_all.deb ... 122s Unpacking libglib2.0-data (2.82.2-3) over (2.82.1-0ubuntu1) ... 122s Preparing to unpack .../06-python-apt-common_2.9.0ubuntu2_all.deb ... 122s Unpacking python-apt-common (2.9.0ubuntu2) over (2.9.0ubuntu1) ... 122s Preparing to unpack .../07-python3-apt_2.9.0ubuntu2_s390x.deb ... 122s Unpacking python3-apt (2.9.0ubuntu2) over (2.9.0ubuntu1) ... 122s Preparing to unpack .../08-python3-yaml_6.0.2-1build1_s390x.deb ... 122s Unpacking python3-yaml (6.0.2-1build1) over (6.0.2-1) ... 122s Preparing to unpack .../09-vim-tiny_2%3a9.1.0861-1ubuntu1_s390x.deb ... 122s Unpacking vim-tiny (2:9.1.0861-1ubuntu1) over (2:9.1.0777-1ubuntu1) ... 122s Preparing to unpack .../10-vim-common_2%3a9.1.0861-1ubuntu1_all.deb ... 122s Unpacking vim-common (2:9.1.0861-1ubuntu1) over (2:9.1.0777-1ubuntu1) ... 122s Preparing to unpack .../11-xxd_2%3a9.1.0861-1ubuntu1_s390x.deb ... 122s Unpacking xxd (2:9.1.0861-1ubuntu1) over (2:9.1.0777-1ubuntu1) ... 122s Preparing to unpack .../12-libplymouth5_24.004.60-2ubuntu4_s390x.deb ... 122s Unpacking libplymouth5:s390x (24.004.60-2ubuntu4) over (24.004.60-1ubuntu11) ... 122s Preparing to unpack .../13-plymouth-theme-ubuntu-text_24.004.60-2ubuntu4_s390x.deb ... 122s Unpacking plymouth-theme-ubuntu-text (24.004.60-2ubuntu4) over (24.004.60-1ubuntu11) ... 123s Preparing to unpack .../14-plymouth_24.004.60-2ubuntu4_s390x.deb ... 123s Unpacking plymouth (24.004.60-2ubuntu4) over (24.004.60-1ubuntu11) ... 123s Preparing to unpack .../15-xz-utils_5.6.3-1_s390x.deb ... 123s Unpacking xz-utils (5.6.3-1) over (5.6.2-2) ... 123s Preparing to unpack .../16-bpftrace_0.21.2-2ubuntu3_s390x.deb ... 123s Unpacking bpftrace (0.21.2-2ubuntu3) over (0.21.2-2ubuntu2) ... 123s Preparing to unpack .../17-curl_8.11.0-1ubuntu2_s390x.deb ... 123s Unpacking curl (8.11.0-1ubuntu2) over (8.9.1-2ubuntu2) ... 123s Preparing to unpack .../18-libcurl4t64_8.11.0-1ubuntu2_s390x.deb ... 123s Unpacking libcurl4t64:s390x (8.11.0-1ubuntu2) over (8.9.1-2ubuntu2) ... 123s Preparing to unpack .../19-dracut-install_105-2ubuntu2_s390x.deb ... 123s Unpacking dracut-install (105-2ubuntu2) over (105-1ubuntu1) ... 123s Preparing to unpack .../20-libcurl3t64-gnutls_8.11.0-1ubuntu2_s390x.deb ... 123s Unpacking libcurl3t64-gnutls:s390x (8.11.0-1ubuntu2) over (8.9.1-2ubuntu2) ... 123s Preparing to unpack .../21-libpolkit-agent-1-0_125-2ubuntu1_s390x.deb ... 123s Unpacking libpolkit-agent-1-0:s390x (125-2ubuntu1) over (124-2ubuntu1) ... 123s Preparing to unpack .../22-libpolkit-gobject-1-0_125-2ubuntu1_s390x.deb ... 123s Unpacking libpolkit-gobject-1-0:s390x (125-2ubuntu1) over (124-2ubuntu1) ... 123s Selecting previously unselected package libsgutils2-1.48:s390x. 123s Preparing to unpack .../23-libsgutils2-1.48_1.48-0ubuntu1_s390x.deb ... 123s Unpacking libsgutils2-1.48:s390x (1.48-0ubuntu1) ... 123s Preparing to unpack .../24-linux-base_4.10.1ubuntu1_all.deb ... 123s Unpacking linux-base (4.10.1ubuntu1) over (4.5ubuntu9) ... 123s Preparing to unpack .../25-lto-disabled-list_54_all.deb ... 123s Unpacking lto-disabled-list (54) over (53) ... 123s Preparing to unpack .../26-lxd-installer_10_all.deb ... 123s Unpacking lxd-installer (10) over (9) ... 123s Preparing to unpack .../27-pinentry-curses_1.3.1-0ubuntu2_s390x.deb ... 123s Unpacking pinentry-curses (1.3.1-0ubuntu2) over (1.2.1-3ubuntu5) ... 123s Preparing to unpack .../28-python3-blinker_1.9.0-1_all.deb ... 123s Unpacking python3-blinker (1.9.0-1) over (1.8.2-1) ... 123s Preparing to unpack .../29-python3-rpds-py_0.21.0-2ubuntu1_s390x.deb ... 123s Unpacking python3-rpds-py (0.21.0-2ubuntu1) over (0.20.0-0ubuntu3) ... 123s Preparing to unpack .../30-python3-jsonschema-specifications_2023.12.1-2_all.deb ... 123s Unpacking python3-jsonschema-specifications (2023.12.1-2) over (2023.12.1-1ubuntu1) ... 123s Preparing to unpack .../31-sg3-utils_1.48-0ubuntu1_s390x.deb ... 123s Unpacking sg3-utils (1.48-0ubuntu1) over (1.46-3ubuntu5) ... 123s Preparing to unpack .../32-sg3-utils-udev_1.48-0ubuntu1_all.deb ... 123s Unpacking sg3-utils-udev (1.48-0ubuntu1) over (1.46-3ubuntu5) ... 123s Setting up pinentry-curses (1.3.1-0ubuntu2) ... 123s Setting up distro-info (1.12) ... 123s Setting up lto-disabled-list (54) ... 123s Setting up apt-utils (2.9.14ubuntu1) ... 123s Setting up linux-base (4.10.1ubuntu1) ... 123s Setting up init (1.67ubuntu1) ... 123s Setting up libcurl4t64:s390x (8.11.0-1ubuntu2) ... 123s Setting up bpftrace (0.21.2-2ubuntu3) ... 123s Setting up openssh-client (1:9.9p1-3ubuntu2) ... 123s Setting up python3-debconf (1.5.87ubuntu1) ... 123s Setting up libcurl3t64-gnutls:s390x (8.11.0-1ubuntu2) ... 123s Setting up libsgutils2-1.48:s390x (1.48-0ubuntu1) ... 123s Setting up python3-yaml (6.0.2-1build1) ... 123s Setting up debconf-i18n (1.5.87ubuntu1) ... 123s Setting up xxd (2:9.1.0861-1ubuntu1) ... 123s Setting up libglib2.0-0t64:s390x (2.82.2-3) ... 123s No schema files found: doing nothing. 123s Setting up libglib2.0-data (2.82.2-3) ... 123s Setting up vim-common (2:9.1.0861-1ubuntu1) ... 123s Setting up xz-utils (5.6.3-1) ... 123s Setting up gir1.2-glib-2.0:s390x (2.82.2-3) ... 123s Setting up lxd-installer (10) ... 124s Setting up python3-rpds-py (0.21.0-2ubuntu1) ... 124s Setting up python-apt-common (2.9.0ubuntu2) ... 124s Setting up dracut-install (105-2ubuntu2) ... 124s Setting up libplymouth5:s390x (24.004.60-2ubuntu4) ... 124s Setting up libgirepository-1.0-1:s390x (1.82.0-2) ... 124s Setting up curl (8.11.0-1ubuntu2) ... 124s Setting up python3-jsonschema-specifications (2023.12.1-2) ... 124s Setting up libpolkit-gobject-1-0:s390x (125-2ubuntu1) ... 124s Setting up sg3-utils (1.48-0ubuntu1) ... 124s Setting up python3-blinker (1.9.0-1) ... 124s Setting up openssh-sftp-server (1:9.9p1-3ubuntu2) ... 124s Setting up openssh-server (1:9.9p1-3ubuntu2) ... 124s Installing new version of config file /etc/ssh/moduli ... 124s Replacing config file /etc/ssh/sshd_config with new version 125s Setting up plymouth (24.004.60-2ubuntu4) ... 125s update-rc.d: warning: start and stop actions are no longer supported; falling back to defaults 125s update-rc.d: warning: start and stop actions are no longer supported; falling back to defaults 125s Setting up python3-apt (2.9.0ubuntu2) ... 125s Setting up vim-tiny (2:9.1.0861-1ubuntu1) ... 125s Setting up sg3-utils-udev (1.48-0ubuntu1) ... 125s update-initramfs: deferring update (trigger activated) 125s Setting up gir1.2-girepository-2.0:s390x (1.82.0-2) ... 125s Setting up libpolkit-agent-1-0:s390x (125-2ubuntu1) ... 125s Processing triggers for debianutils (5.21) ... 126s Processing triggers for install-info (7.1.1-1) ... 126s Processing triggers for initramfs-tools (0.142ubuntu35) ... 126s update-initramfs: Generating /boot/initrd.img-6.11.0-8-generic 126s W: No lz4 in /usr/bin:/sbin:/bin, using gzip 128s Using config file '/etc/zipl.conf' 128s Building bootmap in '/boot' 128s Adding IPL section 'ubuntu' (default) 128s Preparing boot device for LD-IPL: vda (0000). 128s Done. 128s Processing triggers for libc-bin (2.40-1ubuntu3) ... 128s Processing triggers for ufw (0.36.2-8) ... 128s Processing triggers for man-db (2.13.0-1) ... 130s Setting up plymouth-theme-ubuntu-text (24.004.60-2ubuntu4) ... 130s Processing triggers for initramfs-tools (0.142ubuntu35) ... 130s update-initramfs: Generating /boot/initrd.img-6.11.0-8-generic 130s W: No lz4 in /usr/bin:/sbin:/bin, using gzip 132s Using config file '/etc/zipl.conf' 132s Building bootmap in '/boot' 132s Adding IPL section 'ubuntu' (default) 132s Preparing boot device for LD-IPL: vda (0000). 132s Done. 133s Reading package lists... 134s Building dependency tree... 134s Reading state information... 134s The following packages will be REMOVED: 134s libsgutils2-1.46-2* 134s 0 upgraded, 0 newly installed, 1 to remove and 0 not upgraded. 134s After this operation, 294 kB disk space will be freed. 134s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 55566 files and directories currently installed.) 134s Removing libsgutils2-1.46-2:s390x (1.46-3ubuntu5) ... 134s Processing triggers for libc-bin (2.40-1ubuntu3) ... 135s Hit:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease 135s Hit:2 http://ftpmaster.internal/ubuntu plucky InRelease 135s Hit:3 http://ftpmaster.internal/ubuntu plucky-updates InRelease 135s Hit:4 http://ftpmaster.internal/ubuntu plucky-security InRelease 136s Reading package lists... 136s Reading package lists... 136s Building dependency tree... 136s Reading state information... 136s Calculating upgrade... 136s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 136s Reading package lists... 137s Building dependency tree... 137s Reading state information... 137s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 137s autopkgtest [09:35:43]: rebooting testbed after setup commands that affected boot 141s autopkgtest-virt-ssh: WARNING: ssh connection failed. Retrying in 3 seconds... 156s autopkgtest [09:36:02]: testbed running kernel: Linux 6.11.0-8-generic #8-Ubuntu SMP Mon Sep 16 12:49:35 UTC 2024 158s autopkgtest [09:36:04]: @@@@@@@@@@@@@@@@@@@@ apt-source imexam 162s Get:1 http://ftpmaster.internal/ubuntu plucky/universe imexam 0.9.1-6 (dsc) [2361 B] 162s Get:2 http://ftpmaster.internal/ubuntu plucky/universe imexam 0.9.1-6 (tar) [21.4 MB] 162s Get:3 http://ftpmaster.internal/ubuntu plucky/universe imexam 0.9.1-6 (diff) [7756 B] 162s gpgv: Signature made Tue Nov 28 09:16:30 2023 UTC 162s gpgv: using RSA key BAFC6C85F7CB143FEEB6FB157115AFD07710DCF7 162s gpgv: Can't check signature: No public key 162s dpkg-source: warning: cannot verify inline signature for ./imexam_0.9.1-6.dsc: no acceptable signature found 162s autopkgtest [09:36:08]: testing package imexam version 0.9.1-6 163s autopkgtest [09:36:09]: build not needed 164s autopkgtest [09:36:10]: test command1: preparing testbed 165s Reading package lists... 165s Building dependency tree... 165s Reading state information... 166s Starting pkgProblemResolver with broken count: 0 166s Starting 2 pkgProblemResolver with broken count: 0 166s Done 166s The following additional packages will be installed: 166s blt fontconfig-config fonts-dejavu-core fonts-dejavu-mono fonts-lyx ipython3 166s libblas3 libdeflate0 liberfa1 libfontconfig1 libfreetype6 libgfortran5 166s libgomp1 libgraphite2-3 libharfbuzz0b libimagequant0 libjbig0 libjpeg-turbo8 166s libjpeg8 libjs-jquery libjs-jquery-hotkeys libjs-jquery-isonscreen 166s libjs-jquery-metadata libjs-jquery-tablesorter 166s libjs-jquery-throttle-debounce libjs-jquery-ui libjs-sphinxdoc 166s libjs-underscore liblapack3 liblbfgsb0 liblcms2-2 libopenjp2-7 166s libpython3.13-minimal libpython3.13-stdlib libqhull-r8.0 libraqm0 166s libsharpyuv0 libtcl8.6 libtiff6 libtk8.6 libwcs8 libwebp7 libwebpdemux2 166s libwebpmux3 libxft2 libxrender1 libxslt1.1 libxss1 python-matplotlib-data 166s python3-appdirs python3-astropy python3-astropy-iers-data python3-asttokens 166s python3-brotli python3-contourpy python3-coverage python3-cycler 166s python3-dateutil python3-decorator python3-erfa python3-executing 166s python3-fonttools python3-fs python3-hypothesis python3-imexam 166s python3-iniconfig python3-ipython python3-jedi python3-kiwisolver 166s python3-lxml python3-lz4 python3-matplotlib python3-matplotlib-inline 166s python3-mpmath python3-numpy python3-packaging python3-parso python3-pexpect 166s python3-pil python3-pil.imagetk python3-pluggy python3-ply 166s python3-prompt-toolkit python3-ptyprocess python3-pure-eval python3-pytest 166s python3-pytest-arraydiff python3-pytest-astropy 166s python3-pytest-astropy-header python3-pytest-cov python3-pytest-doctestplus 166s python3-pytest-filter-subpackage python3-pytest-mock 166s python3-pytest-remotedata python3-scipy python3-six python3-sortedcontainers 166s python3-stack-data python3-sympy python3-tk python3-traitlets 166s python3-typeshed python3-tz python3-ufolib2 python3-unicodedata2 166s python3-wcwidth python3.12-tk python3.13 python3.13-minimal python3.13-tk 166s tk8.6-blt2.5 unicode-data x11-common 166s Suggested packages: 166s blt-demo libjs-jquery-ui-docs liblcms2-utils tcl8.6 tk8.6 libxml2-utils 166s python-astropy-doc python3-astropy-affiliated python3-bs4 python3-h5py 166s python3-pandas python-coverage-doc python-cycler-doc python-hypothesis-doc 166s python-imexam-doc python-ipython-doc python-lxml-doc cm-super-minimal dvipng 166s ffmpeg fonts-staypuft ghostscript gir1.2-gtk-3.0 inkscape librsvg2-common 166s python-matplotlib-doc python3-cairocffi python3-gi-cairo python3-gobject 166s python3-pyqt5 python3-sip python3-tornado texlive-extra-utils 166s texlive-latex-extra python-mpmath-doc python3-gmpy2 gcc gfortran 166s python-numpy-doc python3-dev python-pexpect-doc python-pil-doc 166s python-ply-doc python-pytest-mock-doc python-scipy-doc 166s python-sortedcontainers-doc texlive-fonts-extra python-sympy-doc tix 166s python3-tk-dbg python-traitlets-doc python3.13-venv python3.13-doc 166s binfmt-support 166s Recommended packages: 166s javascript-common libjs-jquery-datatables python3-click python3-ginga 166s | saods9 python3-ginga | xpa-tools python3-bs4 python3-cssselect 166s python3-html5lib python3-olefile g++ | c++-compiler isympy-common 166s The following NEW packages will be installed: 166s autopkgtest-satdep blt fontconfig-config fonts-dejavu-core fonts-dejavu-mono 166s fonts-lyx ipython3 libblas3 libdeflate0 liberfa1 libfontconfig1 libfreetype6 166s libgfortran5 libgomp1 libgraphite2-3 libharfbuzz0b libimagequant0 libjbig0 166s libjpeg-turbo8 libjpeg8 libjs-jquery libjs-jquery-hotkeys 166s libjs-jquery-isonscreen libjs-jquery-metadata libjs-jquery-tablesorter 166s libjs-jquery-throttle-debounce libjs-jquery-ui libjs-sphinxdoc 166s libjs-underscore liblapack3 liblbfgsb0 liblcms2-2 libopenjp2-7 166s libpython3.13-minimal libpython3.13-stdlib libqhull-r8.0 libraqm0 166s libsharpyuv0 libtcl8.6 libtiff6 libtk8.6 libwcs8 libwebp7 libwebpdemux2 166s libwebpmux3 libxft2 libxrender1 libxslt1.1 libxss1 python-matplotlib-data 166s python3-appdirs python3-astropy python3-astropy-iers-data python3-asttokens 166s python3-brotli python3-contourpy python3-coverage python3-cycler 166s python3-dateutil python3-decorator python3-erfa python3-executing 166s python3-fonttools python3-fs python3-hypothesis python3-imexam 166s python3-iniconfig python3-ipython python3-jedi python3-kiwisolver 166s python3-lxml python3-lz4 python3-matplotlib python3-matplotlib-inline 166s python3-mpmath python3-numpy python3-packaging python3-parso python3-pexpect 166s python3-pil python3-pil.imagetk python3-pluggy python3-ply 166s python3-prompt-toolkit python3-ptyprocess python3-pure-eval python3-pytest 166s python3-pytest-arraydiff python3-pytest-astropy 166s python3-pytest-astropy-header python3-pytest-cov python3-pytest-doctestplus 166s python3-pytest-filter-subpackage python3-pytest-mock 166s python3-pytest-remotedata python3-scipy python3-six python3-sortedcontainers 166s python3-stack-data python3-sympy python3-tk python3-traitlets 166s python3-typeshed python3-tz python3-ufolib2 python3-unicodedata2 166s python3-wcwidth python3.12-tk python3.13 python3.13-minimal python3.13-tk 166s tk8.6-blt2.5 unicode-data x11-common 166s 0 upgraded, 114 newly installed, 0 to remove and 0 not upgraded. 166s Need to get 80.0 MB/80.0 MB of archives. 166s After this operation, 392 MB of additional disk space will be used. 166s Get:1 /tmp/autopkgtest.7M1TJZ/1-autopkgtest-satdep.deb autopkgtest-satdep s390x 0 [732 B] 166s Get:2 http://ftpmaster.internal/ubuntu plucky/main s390x libpython3.13-minimal s390x 3.13.0-2 [877 kB] 167s Get:3 http://ftpmaster.internal/ubuntu plucky/main s390x python3.13-minimal s390x 3.13.0-2 [2172 kB] 167s Get:4 http://ftpmaster.internal/ubuntu plucky/main s390x libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [328 kB] 167s Get:5 http://ftpmaster.internal/ubuntu plucky/universe s390x libjs-jquery-hotkeys all 0~20130707+git2d51e3a9+dfsg-2.1 [11.5 kB] 167s Get:6 http://ftpmaster.internal/ubuntu plucky/main s390x libtcl8.6 s390x 8.6.15+dfsg-2 [1034 kB] 167s Get:7 http://ftpmaster.internal/ubuntu plucky/main s390x libfreetype6 s390x 2.13.3+dfsg-1 [431 kB] 167s Get:8 http://ftpmaster.internal/ubuntu plucky/main s390x fonts-dejavu-mono all 2.37-8 [502 kB] 167s Get:9 http://ftpmaster.internal/ubuntu plucky/main s390x fonts-dejavu-core all 2.37-8 [835 kB] 167s Get:10 http://ftpmaster.internal/ubuntu plucky/main s390x fontconfig-config s390x 2.15.0-1.1ubuntu2 [37.4 kB] 167s Get:11 http://ftpmaster.internal/ubuntu plucky/main s390x libfontconfig1 s390x 2.15.0-1.1ubuntu2 [150 kB] 167s Get:12 http://ftpmaster.internal/ubuntu plucky/main s390x libxrender1 s390x 1:0.9.10-1.1build1 [20.4 kB] 167s Get:13 http://ftpmaster.internal/ubuntu plucky/main s390x libxft2 s390x 2.3.6-1build1 [49.6 kB] 167s Get:14 http://ftpmaster.internal/ubuntu plucky/main s390x x11-common all 1:7.7+23ubuntu3 [21.7 kB] 167s Get:15 http://ftpmaster.internal/ubuntu plucky/main s390x libxss1 s390x 1:1.2.3-1build3 [7396 B] 167s Get:16 http://ftpmaster.internal/ubuntu plucky/main s390x libtk8.6 s390x 8.6.15-1 [828 kB] 167s Get:17 http://ftpmaster.internal/ubuntu plucky/main s390x tk8.6-blt2.5 s390x 2.5.3+dfsg-7build1 [662 kB] 167s Get:18 http://ftpmaster.internal/ubuntu plucky/main s390x blt s390x 2.5.3+dfsg-7build1 [4840 B] 167s Get:19 http://ftpmaster.internal/ubuntu plucky/universe s390x fonts-lyx all 2.4.2.1-1 [171 kB] 167s Get:20 http://ftpmaster.internal/ubuntu plucky/main s390x python3-decorator all 5.1.1-5 [10.1 kB] 167s Get:21 http://ftpmaster.internal/ubuntu plucky/universe s390x python3-parso all 0.8.4-1 [67.6 kB] 167s Get:22 http://ftpmaster.internal/ubuntu plucky/universe s390x python3-typeshed all 0.0~git20231111.6764465-3 [1274 kB] 167s Get:23 http://ftpmaster.internal/ubuntu plucky/universe s390x python3-jedi all 0.19.1+ds1-1 [693 kB] 167s Get:24 http://ftpmaster.internal/ubuntu plucky/universe s390x python3-traitlets all 5.14.3+really5.14.3-1 [71.5 kB] 167s Get:25 http://ftpmaster.internal/ubuntu plucky/universe s390x python3-matplotlib-inline all 0.1.6-2 [8784 B] 167s Get:26 http://ftpmaster.internal/ubuntu plucky/main s390x python3-wcwidth all 0.2.13+dfsg1-1 [26.3 kB] 167s Get:27 http://ftpmaster.internal/ubuntu plucky/universe s390x python3-prompt-toolkit all 3.0.48-1 [256 kB] 167s Get:28 http://ftpmaster.internal/ubuntu plucky/universe s390x python3-asttokens all 2.4.1-2 [20.8 kB] 167s Get:29 http://ftpmaster.internal/ubuntu plucky/universe s390x python3-executing all 2.1.0-0.1 [24.4 kB] 167s Get:30 http://ftpmaster.internal/ubuntu plucky/universe s390x python3-pure-eval all 0.2.3-1 [11.4 kB] 167s Get:31 http://ftpmaster.internal/ubuntu plucky/universe s390x python3-stack-data all 0.6.3-1 [22.0 kB] 167s Get:32 http://ftpmaster.internal/ubuntu plucky/main s390x python3-ptyprocess all 0.7.0-6 [14.8 kB] 167s Get:33 http://ftpmaster.internal/ubuntu plucky/main s390x python3-pexpect all 4.9-3 [48.1 kB] 167s Get:34 http://ftpmaster.internal/ubuntu plucky/universe s390x python3-ipython all 8.29.0-1 [569 kB] 167s Get:35 http://ftpmaster.internal/ubuntu plucky/universe s390x ipython3 all 8.29.0-1 [4938 B] 167s Get:36 http://ftpmaster.internal/ubuntu plucky/main s390x libblas3 s390x 3.12.0-4 [238 kB] 168s Get:37 http://ftpmaster.internal/ubuntu plucky/main s390x libdeflate0 s390x 1.22-1 [46.1 kB] 168s Get:38 http://ftpmaster.internal/ubuntu plucky/main s390x libgfortran5 s390x 14.2.0-8ubuntu1 [587 kB] 168s Get:39 http://ftpmaster.internal/ubuntu plucky/main s390x libgomp1 s390x 14.2.0-8ubuntu1 [151 kB] 168s Get:40 http://ftpmaster.internal/ubuntu plucky/main s390x libgraphite2-3 s390x 1.3.14-2ubuntu1 [79.8 kB] 168s Get:41 http://ftpmaster.internal/ubuntu plucky/main s390x libharfbuzz0b s390x 10.0.1-1 [536 kB] 168s Get:42 http://ftpmaster.internal/ubuntu plucky/main s390x libimagequant0 s390x 2.18.0-1build1 [43.3 kB] 168s Get:43 http://ftpmaster.internal/ubuntu plucky/main s390x libjpeg-turbo8 s390x 2.1.5-3ubuntu2 [147 kB] 168s Get:44 http://ftpmaster.internal/ubuntu plucky/main s390x libjpeg8 s390x 8c-2ubuntu11 [2146 B] 168s Get:45 http://ftpmaster.internal/ubuntu plucky/universe s390x libjs-jquery-metadata all 12-4 [6582 B] 168s Get:46 http://ftpmaster.internal/ubuntu plucky/universe s390x libjs-jquery-tablesorter all 1:2.31.3+dfsg1-4 [192 kB] 168s Get:47 http://ftpmaster.internal/ubuntu plucky/universe s390x libjs-jquery-throttle-debounce all 1.1+dfsg.1-2 [12.5 kB] 168s Get:48 http://ftpmaster.internal/ubuntu plucky/universe s390x libjs-jquery-ui all 1.13.2+dfsg-1 [252 kB] 168s Get:49 http://ftpmaster.internal/ubuntu plucky/main s390x libjs-underscore all 1.13.4~dfsg+~1.11.4-3 [118 kB] 168s Get:50 http://ftpmaster.internal/ubuntu plucky/main s390x libjs-sphinxdoc all 7.4.7-4 [158 kB] 168s Get:51 http://ftpmaster.internal/ubuntu plucky/main s390x liblapack3 s390x 3.12.0-4 [2964 kB] 168s Get:52 http://ftpmaster.internal/ubuntu plucky/universe s390x liblbfgsb0 s390x 3.0+dfsg.4-1build1 [32.4 kB] 168s Get:53 http://ftpmaster.internal/ubuntu plucky/main s390x liblcms2-2 s390x 2.16-2 [175 kB] 168s Get:54 http://ftpmaster.internal/ubuntu plucky/main s390x libpython3.13-stdlib s390x 3.13.0-2 [2086 kB] 168s Get:55 http://ftpmaster.internal/ubuntu plucky/universe s390x libqhull-r8.0 s390x 2020.2-6build1 [199 kB] 168s Get:56 http://ftpmaster.internal/ubuntu plucky/main s390x libraqm0 s390x 0.10.1-1build1 [16.2 kB] 168s Get:57 http://ftpmaster.internal/ubuntu plucky/main s390x libsharpyuv0 s390x 1.4.0-0.1 [16.2 kB] 168s Get:58 http://ftpmaster.internal/ubuntu plucky/main s390x libjbig0 s390x 2.1-6.1ubuntu2 [33.1 kB] 168s Get:59 http://ftpmaster.internal/ubuntu plucky/main s390x libwebp7 s390x 1.4.0-0.1 [204 kB] 168s Get:60 http://ftpmaster.internal/ubuntu plucky/main s390x libtiff6 s390x 4.5.1+git230720-4ubuntu4 [217 kB] 168s Get:61 http://ftpmaster.internal/ubuntu plucky/universe s390x libwcs8 s390x 8.4+ds-1 [293 kB] 168s Get:62 http://ftpmaster.internal/ubuntu plucky/main s390x libwebpdemux2 s390x 1.4.0-0.1 [12.2 kB] 168s Get:63 http://ftpmaster.internal/ubuntu plucky/main s390x libwebpmux3 s390x 1.4.0-0.1 [25.3 kB] 168s Get:64 http://ftpmaster.internal/ubuntu plucky/main s390x libxslt1.1 s390x 1.1.39-0exp1ubuntu1 [169 kB] 168s Get:65 http://ftpmaster.internal/ubuntu plucky/universe s390x python-matplotlib-data all 3.8.3-3ubuntu1 [2928 kB] 169s Get:66 http://ftpmaster.internal/ubuntu plucky/main s390x python3-appdirs all 1.4.4-4 [10.9 kB] 169s Get:67 http://ftpmaster.internal/ubuntu plucky/universe s390x python3-iniconfig all 1.1.1-2 [6024 B] 169s Get:68 http://ftpmaster.internal/ubuntu plucky/main s390x python3-packaging all 24.2-1 [51.5 kB] 169s Get:69 http://ftpmaster.internal/ubuntu plucky/universe s390x python3-pluggy all 1.5.0-1 [21.0 kB] 169s Get:70 http://ftpmaster.internal/ubuntu plucky/universe s390x python3-pytest all 8.3.3-1 [251 kB] 169s Get:71 http://ftpmaster.internal/ubuntu plucky/main s390x python3-dateutil all 2.9.0-3 [80.2 kB] 169s Get:72 http://ftpmaster.internal/ubuntu plucky/main s390x python3-sortedcontainers all 2.4.0-2 [27.6 kB] 169s Get:73 http://ftpmaster.internal/ubuntu plucky/universe s390x python3-hypothesis all 6.119.3-1 [329 kB] 169s Get:74 http://ftpmaster.internal/ubuntu plucky/main s390x python3-numpy s390x 1:1.26.4+ds-11ubuntu1 [4602 kB] 169s Get:75 http://ftpmaster.internal/ubuntu plucky/universe s390x python3-pytest-arraydiff all 0.6.1-3 [10.2 kB] 169s Get:76 http://ftpmaster.internal/ubuntu plucky/universe s390x python3-pytest-astropy-header all 0.2.2-2 [8620 B] 169s Get:77 http://ftpmaster.internal/ubuntu plucky/main s390x python3.13 s390x 3.13.0-2 [719 kB] 169s Get:78 http://ftpmaster.internal/ubuntu plucky/universe s390x python3-coverage s390x 7.4.4+dfsg1-0ubuntu3 [150 kB] 169s Get:79 http://ftpmaster.internal/ubuntu plucky/universe s390x libjs-jquery-isonscreen all 1.2.0-1.1 [3244 B] 169s Get:80 http://ftpmaster.internal/ubuntu plucky/universe s390x python3-pytest-cov all 5.0.0-1 [21.3 kB] 169s Get:81 http://ftpmaster.internal/ubuntu plucky/universe s390x python3-pytest-doctestplus all 1.2.1-2 [23.5 kB] 169s Get:82 http://ftpmaster.internal/ubuntu plucky/universe s390x python3-pytest-filter-subpackage all 0.2.0-1 [6094 B] 169s Get:83 http://ftpmaster.internal/ubuntu plucky/universe s390x python3-pytest-mock all 3.14.0-2 [11.7 kB] 169s Get:84 http://ftpmaster.internal/ubuntu plucky/universe s390x python3-pytest-remotedata all 0.4.1-1 [8650 B] 169s Get:85 http://ftpmaster.internal/ubuntu plucky/universe s390x python3-pytest-astropy all 0.11.0-1 [5902 B] 169s Get:86 http://ftpmaster.internal/ubuntu plucky/main s390x python3-ply all 3.11-7 [45.4 kB] 169s Get:87 http://ftpmaster.internal/ubuntu plucky/universe s390x python3-astropy-iers-data all 0.2024.07.22.00.34.13-1 [1198 kB] 169s Get:88 http://ftpmaster.internal/ubuntu plucky/universe s390x liberfa1 s390x 2.0.1-1build1 [137 kB] 169s Get:89 http://ftpmaster.internal/ubuntu plucky/universe s390x python3-erfa s390x 2.0.1.5+ds-1 [315 kB] 169s Get:90 http://ftpmaster.internal/ubuntu plucky-proposed/universe s390x python3-astropy s390x 7.0.0-1 [4086 kB] 169s Get:91 http://ftpmaster.internal/ubuntu plucky/universe s390x python3-brotli s390x 1.1.0-2build3 [381 kB] 169s Get:92 http://ftpmaster.internal/ubuntu plucky/universe s390x python3-contourpy s390x 1.3.0-2build1 [235 kB] 169s Get:93 http://ftpmaster.internal/ubuntu plucky/universe s390x python3-cycler all 0.12.1-1 [9716 B] 169s Get:94 http://ftpmaster.internal/ubuntu plucky/main s390x python3-tz all 2024.1-2 [31.4 kB] 170s Get:95 http://ftpmaster.internal/ubuntu plucky/main s390x python3-six all 1.16.0-7 [13.1 kB] 170s Get:96 http://ftpmaster.internal/ubuntu plucky/universe s390x python3-fs all 2.4.16-4 [91.3 kB] 170s Get:97 http://ftpmaster.internal/ubuntu plucky/main s390x python3-lxml s390x 5.3.0-1build1 [1751 kB] 170s Get:98 http://ftpmaster.internal/ubuntu plucky/universe s390x python3-lz4 s390x 4.0.2+dfsg-1build5 [27.1 kB] 170s Get:99 http://ftpmaster.internal/ubuntu plucky/universe s390x python3-scipy s390x 1.13.1-5ubuntu1 [20.7 MB] 171s Get:100 http://ftpmaster.internal/ubuntu plucky/universe s390x python3-mpmath all 1.3.0-1 [425 kB] 171s Get:101 http://ftpmaster.internal/ubuntu plucky/universe s390x python3-sympy all 1.13.3-1 [4228 kB] 171s Get:102 http://ftpmaster.internal/ubuntu plucky/universe s390x python3-ufolib2 all 0.16.1+dfsg1-1 [33.4 kB] 171s Get:103 http://ftpmaster.internal/ubuntu plucky/universe s390x python3-unicodedata2 s390x 15.1.0+ds-1build2 [362 kB] 172s Get:104 http://ftpmaster.internal/ubuntu plucky/universe s390x unicode-data all 15.1.0-1 [8878 kB] 180s Get:105 http://ftpmaster.internal/ubuntu plucky/universe s390x python3-fonttools s390x 4.55.0-3 [1719 kB] 181s Get:106 http://ftpmaster.internal/ubuntu plucky/main s390x libopenjp2-7 s390x 2.5.0-2ubuntu1 [208 kB] 181s Get:107 http://ftpmaster.internal/ubuntu plucky/main s390x python3-pil s390x 10.4.0-1ubuntu2 [515 kB] 181s Get:108 http://ftpmaster.internal/ubuntu plucky/main s390x python3.12-tk s390x 3.12.7-3 [117 kB] 181s Get:109 http://ftpmaster.internal/ubuntu plucky/main s390x python3.13-tk s390x 3.13.0-2 [107 kB] 181s Get:110 http://ftpmaster.internal/ubuntu plucky/main s390x python3-tk s390x 3.12.7-1 [9750 B] 181s Get:111 http://ftpmaster.internal/ubuntu plucky/universe s390x python3-pil.imagetk s390x 10.4.0-1ubuntu2 [9444 B] 181s Get:112 http://ftpmaster.internal/ubuntu plucky/universe s390x python3-kiwisolver s390x 1.4.7-2build1 [65.5 kB] 182s Get:113 http://ftpmaster.internal/ubuntu plucky/universe s390x python3-matplotlib s390x 3.8.3-3ubuntu1 [4657 kB] 184s Get:114 http://ftpmaster.internal/ubuntu plucky/universe s390x python3-imexam s390x 0.9.1-6 [50.5 kB] 184s Fetched 80.0 MB in 18s (4457 kB/s) 184s Selecting previously unselected package libpython3.13-minimal:s390x. 184s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 55561 files and directories currently installed.) 184s Preparing to unpack .../000-libpython3.13-minimal_3.13.0-2_s390x.deb ... 184s Unpacking libpython3.13-minimal:s390x (3.13.0-2) ... 184s Selecting previously unselected package python3.13-minimal. 184s Preparing to unpack .../001-python3.13-minimal_3.13.0-2_s390x.deb ... 184s Unpacking python3.13-minimal (3.13.0-2) ... 184s Selecting previously unselected package libjs-jquery. 184s Preparing to unpack .../002-libjs-jquery_3.6.1+dfsg+~3.5.14-1_all.deb ... 184s Unpacking libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... 184s Selecting previously unselected package libjs-jquery-hotkeys. 184s Preparing to unpack .../003-libjs-jquery-hotkeys_0~20130707+git2d51e3a9+dfsg-2.1_all.deb ... 184s Unpacking libjs-jquery-hotkeys (0~20130707+git2d51e3a9+dfsg-2.1) ... 184s Selecting previously unselected package libtcl8.6:s390x. 185s Preparing to unpack .../004-libtcl8.6_8.6.15+dfsg-2_s390x.deb ... 185s Unpacking libtcl8.6:s390x (8.6.15+dfsg-2) ... 185s Selecting previously unselected package libfreetype6:s390x. 185s Preparing to unpack .../005-libfreetype6_2.13.3+dfsg-1_s390x.deb ... 185s Unpacking libfreetype6:s390x (2.13.3+dfsg-1) ... 185s Selecting previously unselected package fonts-dejavu-mono. 185s Preparing to unpack .../006-fonts-dejavu-mono_2.37-8_all.deb ... 185s Unpacking fonts-dejavu-mono (2.37-8) ... 185s Selecting previously unselected package fonts-dejavu-core. 185s Preparing to unpack .../007-fonts-dejavu-core_2.37-8_all.deb ... 185s Unpacking fonts-dejavu-core (2.37-8) ... 185s Selecting previously unselected package fontconfig-config. 185s Preparing to unpack .../008-fontconfig-config_2.15.0-1.1ubuntu2_s390x.deb ... 185s Unpacking fontconfig-config (2.15.0-1.1ubuntu2) ... 185s Selecting previously unselected package libfontconfig1:s390x. 185s Preparing to unpack .../009-libfontconfig1_2.15.0-1.1ubuntu2_s390x.deb ... 185s Unpacking libfontconfig1:s390x (2.15.0-1.1ubuntu2) ... 185s Selecting previously unselected package libxrender1:s390x. 185s Preparing to unpack .../010-libxrender1_1%3a0.9.10-1.1build1_s390x.deb ... 185s Unpacking libxrender1:s390x (1:0.9.10-1.1build1) ... 185s Selecting previously unselected package libxft2:s390x. 185s Preparing to unpack .../011-libxft2_2.3.6-1build1_s390x.deb ... 185s Unpacking libxft2:s390x (2.3.6-1build1) ... 185s Selecting previously unselected package x11-common. 185s Preparing to unpack .../012-x11-common_1%3a7.7+23ubuntu3_all.deb ... 185s Unpacking x11-common (1:7.7+23ubuntu3) ... 185s Selecting previously unselected package libxss1:s390x. 185s Preparing to unpack .../013-libxss1_1%3a1.2.3-1build3_s390x.deb ... 185s Unpacking libxss1:s390x (1:1.2.3-1build3) ... 185s Selecting previously unselected package libtk8.6:s390x. 185s Preparing to unpack .../014-libtk8.6_8.6.15-1_s390x.deb ... 185s Unpacking libtk8.6:s390x (8.6.15-1) ... 185s Selecting previously unselected package tk8.6-blt2.5. 185s Preparing to unpack .../015-tk8.6-blt2.5_2.5.3+dfsg-7build1_s390x.deb ... 185s Unpacking tk8.6-blt2.5 (2.5.3+dfsg-7build1) ... 185s Selecting previously unselected package blt. 185s Preparing to unpack .../016-blt_2.5.3+dfsg-7build1_s390x.deb ... 185s Unpacking blt (2.5.3+dfsg-7build1) ... 185s Selecting previously unselected package fonts-lyx. 185s Preparing to unpack .../017-fonts-lyx_2.4.2.1-1_all.deb ... 185s Unpacking fonts-lyx (2.4.2.1-1) ... 185s Selecting previously unselected package python3-decorator. 185s Preparing to unpack .../018-python3-decorator_5.1.1-5_all.deb ... 185s Unpacking python3-decorator (5.1.1-5) ... 185s Selecting previously unselected package python3-parso. 185s Preparing to unpack .../019-python3-parso_0.8.4-1_all.deb ... 185s Unpacking python3-parso (0.8.4-1) ... 185s Selecting previously unselected package python3-typeshed. 185s Preparing to unpack .../020-python3-typeshed_0.0~git20231111.6764465-3_all.deb ... 185s Unpacking python3-typeshed (0.0~git20231111.6764465-3) ... 185s Selecting previously unselected package python3-jedi. 185s Preparing to unpack .../021-python3-jedi_0.19.1+ds1-1_all.deb ... 185s Unpacking python3-jedi (0.19.1+ds1-1) ... 185s Selecting previously unselected package python3-traitlets. 185s Preparing to unpack .../022-python3-traitlets_5.14.3+really5.14.3-1_all.deb ... 185s Unpacking python3-traitlets (5.14.3+really5.14.3-1) ... 185s Selecting previously unselected package python3-matplotlib-inline. 185s Preparing to unpack .../023-python3-matplotlib-inline_0.1.6-2_all.deb ... 185s Unpacking python3-matplotlib-inline (0.1.6-2) ... 185s Selecting previously unselected package python3-wcwidth. 185s Preparing to unpack .../024-python3-wcwidth_0.2.13+dfsg1-1_all.deb ... 185s Unpacking python3-wcwidth (0.2.13+dfsg1-1) ... 185s Selecting previously unselected package python3-prompt-toolkit. 185s Preparing to unpack .../025-python3-prompt-toolkit_3.0.48-1_all.deb ... 185s Unpacking python3-prompt-toolkit (3.0.48-1) ... 185s Selecting previously unselected package python3-asttokens. 185s Preparing to unpack .../026-python3-asttokens_2.4.1-2_all.deb ... 185s Unpacking python3-asttokens (2.4.1-2) ... 185s Selecting previously unselected package python3-executing. 185s Preparing to unpack .../027-python3-executing_2.1.0-0.1_all.deb ... 185s Unpacking python3-executing (2.1.0-0.1) ... 185s Selecting previously unselected package python3-pure-eval. 185s Preparing to unpack .../028-python3-pure-eval_0.2.3-1_all.deb ... 185s Unpacking python3-pure-eval (0.2.3-1) ... 185s Selecting previously unselected package python3-stack-data. 185s Preparing to unpack .../029-python3-stack-data_0.6.3-1_all.deb ... 185s Unpacking python3-stack-data (0.6.3-1) ... 185s Selecting previously unselected package python3-ptyprocess. 185s Preparing to unpack .../030-python3-ptyprocess_0.7.0-6_all.deb ... 185s Unpacking python3-ptyprocess (0.7.0-6) ... 185s Selecting previously unselected package python3-pexpect. 185s Preparing to unpack .../031-python3-pexpect_4.9-3_all.deb ... 185s Unpacking python3-pexpect (4.9-3) ... 185s Selecting previously unselected package python3-ipython. 185s Preparing to unpack .../032-python3-ipython_8.29.0-1_all.deb ... 185s Unpacking python3-ipython (8.29.0-1) ... 185s Selecting previously unselected package ipython3. 185s Preparing to unpack .../033-ipython3_8.29.0-1_all.deb ... 185s Unpacking ipython3 (8.29.0-1) ... 185s Selecting previously unselected package libblas3:s390x. 185s Preparing to unpack .../034-libblas3_3.12.0-4_s390x.deb ... 185s Unpacking libblas3:s390x (3.12.0-4) ... 185s Selecting previously unselected package libdeflate0:s390x. 185s Preparing to unpack .../035-libdeflate0_1.22-1_s390x.deb ... 185s Unpacking libdeflate0:s390x (1.22-1) ... 185s Selecting previously unselected package libgfortran5:s390x. 185s Preparing to unpack .../036-libgfortran5_14.2.0-8ubuntu1_s390x.deb ... 185s Unpacking libgfortran5:s390x (14.2.0-8ubuntu1) ... 185s Selecting previously unselected package libgomp1:s390x. 185s Preparing to unpack .../037-libgomp1_14.2.0-8ubuntu1_s390x.deb ... 185s Unpacking libgomp1:s390x (14.2.0-8ubuntu1) ... 185s Selecting previously unselected package libgraphite2-3:s390x. 185s Preparing to unpack .../038-libgraphite2-3_1.3.14-2ubuntu1_s390x.deb ... 185s Unpacking libgraphite2-3:s390x (1.3.14-2ubuntu1) ... 185s Selecting previously unselected package libharfbuzz0b:s390x. 185s Preparing to unpack .../039-libharfbuzz0b_10.0.1-1_s390x.deb ... 185s Unpacking libharfbuzz0b:s390x (10.0.1-1) ... 185s Selecting previously unselected package libimagequant0:s390x. 185s Preparing to unpack .../040-libimagequant0_2.18.0-1build1_s390x.deb ... 185s Unpacking libimagequant0:s390x (2.18.0-1build1) ... 185s Selecting previously unselected package libjpeg-turbo8:s390x. 185s Preparing to unpack .../041-libjpeg-turbo8_2.1.5-3ubuntu2_s390x.deb ... 185s Unpacking libjpeg-turbo8:s390x (2.1.5-3ubuntu2) ... 185s Selecting previously unselected package libjpeg8:s390x. 185s Preparing to unpack .../042-libjpeg8_8c-2ubuntu11_s390x.deb ... 185s Unpacking libjpeg8:s390x (8c-2ubuntu11) ... 185s Selecting previously unselected package libjs-jquery-metadata. 185s Preparing to unpack .../043-libjs-jquery-metadata_12-4_all.deb ... 185s Unpacking libjs-jquery-metadata (12-4) ... 185s Selecting previously unselected package libjs-jquery-tablesorter. 185s Preparing to unpack .../044-libjs-jquery-tablesorter_1%3a2.31.3+dfsg1-4_all.deb ... 185s Unpacking libjs-jquery-tablesorter (1:2.31.3+dfsg1-4) ... 185s Selecting previously unselected package libjs-jquery-throttle-debounce. 185s Preparing to unpack .../045-libjs-jquery-throttle-debounce_1.1+dfsg.1-2_all.deb ... 185s Unpacking libjs-jquery-throttle-debounce (1.1+dfsg.1-2) ... 185s Selecting previously unselected package libjs-jquery-ui. 185s Preparing to unpack .../046-libjs-jquery-ui_1.13.2+dfsg-1_all.deb ... 185s Unpacking libjs-jquery-ui (1.13.2+dfsg-1) ... 186s Selecting previously unselected package libjs-underscore. 186s Preparing to unpack .../047-libjs-underscore_1.13.4~dfsg+~1.11.4-3_all.deb ... 186s Unpacking libjs-underscore (1.13.4~dfsg+~1.11.4-3) ... 186s Selecting previously unselected package libjs-sphinxdoc. 186s Preparing to unpack .../048-libjs-sphinxdoc_7.4.7-4_all.deb ... 186s Unpacking libjs-sphinxdoc (7.4.7-4) ... 186s Selecting previously unselected package liblapack3:s390x. 186s Preparing to unpack .../049-liblapack3_3.12.0-4_s390x.deb ... 186s Unpacking liblapack3:s390x (3.12.0-4) ... 186s Selecting previously unselected package liblbfgsb0:s390x. 186s Preparing to unpack .../050-liblbfgsb0_3.0+dfsg.4-1build1_s390x.deb ... 186s Unpacking liblbfgsb0:s390x (3.0+dfsg.4-1build1) ... 186s Selecting previously unselected package liblcms2-2:s390x. 186s Preparing to unpack .../051-liblcms2-2_2.16-2_s390x.deb ... 186s Unpacking liblcms2-2:s390x (2.16-2) ... 186s Selecting previously unselected package libpython3.13-stdlib:s390x. 186s Preparing to unpack .../052-libpython3.13-stdlib_3.13.0-2_s390x.deb ... 186s Unpacking libpython3.13-stdlib:s390x (3.13.0-2) ... 186s Selecting previously unselected package libqhull-r8.0:s390x. 186s Preparing to unpack .../053-libqhull-r8.0_2020.2-6build1_s390x.deb ... 186s Unpacking libqhull-r8.0:s390x (2020.2-6build1) ... 186s Selecting previously unselected package libraqm0:s390x. 186s Preparing to unpack .../054-libraqm0_0.10.1-1build1_s390x.deb ... 186s Unpacking libraqm0:s390x (0.10.1-1build1) ... 186s Selecting previously unselected package libsharpyuv0:s390x. 186s Preparing to unpack .../055-libsharpyuv0_1.4.0-0.1_s390x.deb ... 186s Unpacking libsharpyuv0:s390x (1.4.0-0.1) ... 186s Selecting previously unselected package libjbig0:s390x. 186s Preparing to unpack .../056-libjbig0_2.1-6.1ubuntu2_s390x.deb ... 186s Unpacking libjbig0:s390x (2.1-6.1ubuntu2) ... 186s Selecting previously unselected package libwebp7:s390x. 186s Preparing to unpack .../057-libwebp7_1.4.0-0.1_s390x.deb ... 186s Unpacking libwebp7:s390x (1.4.0-0.1) ... 186s Selecting previously unselected package libtiff6:s390x. 186s Preparing to unpack .../058-libtiff6_4.5.1+git230720-4ubuntu4_s390x.deb ... 186s Unpacking libtiff6:s390x (4.5.1+git230720-4ubuntu4) ... 186s Selecting previously unselected package libwcs8:s390x. 186s Preparing to unpack .../059-libwcs8_8.4+ds-1_s390x.deb ... 186s Unpacking libwcs8:s390x (8.4+ds-1) ... 186s Selecting previously unselected package libwebpdemux2:s390x. 186s Preparing to unpack .../060-libwebpdemux2_1.4.0-0.1_s390x.deb ... 186s Unpacking libwebpdemux2:s390x (1.4.0-0.1) ... 186s Selecting previously unselected package libwebpmux3:s390x. 186s Preparing to unpack .../061-libwebpmux3_1.4.0-0.1_s390x.deb ... 186s Unpacking libwebpmux3:s390x (1.4.0-0.1) ... 186s Selecting previously unselected package libxslt1.1:s390x. 186s Preparing to unpack .../062-libxslt1.1_1.1.39-0exp1ubuntu1_s390x.deb ... 186s Unpacking libxslt1.1:s390x (1.1.39-0exp1ubuntu1) ... 186s Selecting previously unselected package python-matplotlib-data. 186s Preparing to unpack .../063-python-matplotlib-data_3.8.3-3ubuntu1_all.deb ... 186s Unpacking python-matplotlib-data (3.8.3-3ubuntu1) ... 186s Selecting previously unselected package python3-appdirs. 186s Preparing to unpack .../064-python3-appdirs_1.4.4-4_all.deb ... 186s Unpacking python3-appdirs (1.4.4-4) ... 186s Selecting previously unselected package python3-iniconfig. 186s Preparing to unpack .../065-python3-iniconfig_1.1.1-2_all.deb ... 186s Unpacking python3-iniconfig (1.1.1-2) ... 186s Selecting previously unselected package python3-packaging. 186s Preparing to unpack .../066-python3-packaging_24.2-1_all.deb ... 186s Unpacking python3-packaging (24.2-1) ... 186s Selecting previously unselected package python3-pluggy. 186s Preparing to unpack .../067-python3-pluggy_1.5.0-1_all.deb ... 186s Unpacking python3-pluggy (1.5.0-1) ... 186s Selecting previously unselected package python3-pytest. 186s Preparing to unpack .../068-python3-pytest_8.3.3-1_all.deb ... 186s Unpacking python3-pytest (8.3.3-1) ... 186s Selecting previously unselected package python3-dateutil. 186s Preparing to unpack .../069-python3-dateutil_2.9.0-3_all.deb ... 186s Unpacking python3-dateutil (2.9.0-3) ... 186s Selecting previously unselected package python3-sortedcontainers. 186s Preparing to unpack .../070-python3-sortedcontainers_2.4.0-2_all.deb ... 186s Unpacking python3-sortedcontainers (2.4.0-2) ... 186s Selecting previously unselected package python3-hypothesis. 186s Preparing to unpack .../071-python3-hypothesis_6.119.3-1_all.deb ... 186s Unpacking python3-hypothesis (6.119.3-1) ... 186s Selecting previously unselected package python3-numpy. 186s Preparing to unpack .../072-python3-numpy_1%3a1.26.4+ds-11ubuntu1_s390x.deb ... 186s Unpacking python3-numpy (1:1.26.4+ds-11ubuntu1) ... 186s Selecting previously unselected package python3-pytest-arraydiff. 186s Preparing to unpack .../073-python3-pytest-arraydiff_0.6.1-3_all.deb ... 186s Unpacking python3-pytest-arraydiff (0.6.1-3) ... 186s Selecting previously unselected package python3-pytest-astropy-header. 186s Preparing to unpack .../074-python3-pytest-astropy-header_0.2.2-2_all.deb ... 186s Unpacking python3-pytest-astropy-header (0.2.2-2) ... 186s Selecting previously unselected package python3.13. 186s Preparing to unpack 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.../080-python3-pytest-filter-subpackage_0.2.0-1_all.deb ... 186s Unpacking python3-pytest-filter-subpackage (0.2.0-1) ... 186s Selecting previously unselected package python3-pytest-mock. 186s Preparing to unpack .../081-python3-pytest-mock_3.14.0-2_all.deb ... 186s Unpacking python3-pytest-mock (3.14.0-2) ... 186s Selecting previously unselected package python3-pytest-remotedata. 186s Preparing to unpack .../082-python3-pytest-remotedata_0.4.1-1_all.deb ... 186s Unpacking python3-pytest-remotedata (0.4.1-1) ... 186s Selecting previously unselected package python3-pytest-astropy. 186s Preparing to unpack .../083-python3-pytest-astropy_0.11.0-1_all.deb ... 186s Unpacking python3-pytest-astropy (0.11.0-1) ... 186s Selecting previously unselected package python3-ply. 186s Preparing to unpack .../084-python3-ply_3.11-7_all.deb ... 186s Unpacking python3-ply (3.11-7) ... 186s Selecting previously unselected package python3-astropy-iers-data. 186s Preparing to unpack .../085-python3-astropy-iers-data_0.2024.07.22.00.34.13-1_all.deb ... 186s Unpacking python3-astropy-iers-data (0.2024.07.22.00.34.13-1) ... 186s Selecting previously unselected package liberfa1:s390x. 186s Preparing to unpack .../086-liberfa1_2.0.1-1build1_s390x.deb ... 186s Unpacking liberfa1:s390x (2.0.1-1build1) ... 186s Selecting previously unselected package python3-erfa. 186s Preparing to unpack .../087-python3-erfa_2.0.1.5+ds-1_s390x.deb ... 186s Unpacking python3-erfa (2.0.1.5+ds-1) ... 186s Selecting previously unselected package python3-astropy. 186s Preparing to unpack .../088-python3-astropy_7.0.0-1_s390x.deb ... 186s Unpacking python3-astropy (7.0.0-1) ... 187s Selecting previously unselected package python3-brotli. 187s Preparing to unpack .../089-python3-brotli_1.1.0-2build3_s390x.deb ... 187s Unpacking python3-brotli (1.1.0-2build3) ... 187s Selecting previously unselected package python3-contourpy. 187s Preparing to unpack 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unselected package python3-lz4. 187s Preparing to unpack .../096-python3-lz4_4.0.2+dfsg-1build5_s390x.deb ... 187s Unpacking python3-lz4 (4.0.2+dfsg-1build5) ... 187s Selecting previously unselected package python3-scipy. 187s Preparing to unpack .../097-python3-scipy_1.13.1-5ubuntu1_s390x.deb ... 187s Unpacking python3-scipy (1.13.1-5ubuntu1) ... 187s Selecting previously unselected package python3-mpmath. 187s Preparing to unpack .../098-python3-mpmath_1.3.0-1_all.deb ... 187s Unpacking python3-mpmath (1.3.0-1) ... 187s Selecting previously unselected package python3-sympy. 187s Preparing to unpack .../099-python3-sympy_1.13.3-1_all.deb ... 187s Unpacking python3-sympy (1.13.3-1) ... 187s Selecting previously unselected package python3-ufolib2. 187s Preparing to unpack .../100-python3-ufolib2_0.16.1+dfsg1-1_all.deb ... 187s Unpacking python3-ufolib2 (0.16.1+dfsg1-1) ... 187s Selecting previously unselected package python3-unicodedata2. 187s Preparing to unpack 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fonts-lyx (2.4.2.1-1) ... 188s Setting up python3-ply (3.11-7) ... 189s Setting up x11-common (1:7.7+23ubuntu3) ... 189s Setting up libdeflate0:s390x (1.22-1) ... 189s Setting up libqhull-r8.0:s390x (2020.2-6build1) ... 189s Setting up python3-sortedcontainers (2.4.0-2) ... 189s Setting up libjs-jquery-throttle-debounce (1.1+dfsg.1-2) ... 189s Setting up libgomp1:s390x (14.2.0-8ubuntu1) ... 189s Setting up python3-astropy-iers-data (0.2024.07.22.00.34.13-1) ... 189s Setting up libjbig0:s390x (2.1-6.1ubuntu2) ... 189s Setting up python3-tz (2024.1-2) ... 189s Setting up unicode-data (15.1.0-1) ... 189s Setting up python3-six (1.16.0-7) ... 189s Setting up libpython3.13-minimal:s390x (3.13.0-2) ... 189s Setting up python3-decorator (5.1.1-5) ... 189s Setting up libblas3:s390x (3.12.0-4) ... 189s update-alternatives: using /usr/lib/s390x-linux-gnu/blas/libblas.so.3 to provide /usr/lib/s390x-linux-gnu/libblas.so.3 (libblas.so.3-s390x-linux-gnu) in auto mode 189s Setting up python3-packaging (24.2-1) ... 189s Setting up python3-wcwidth (0.2.13+dfsg1-1) ... 190s Setting up libfreetype6:s390x (2.13.3+dfsg-1) ... 190s Setting up python3-typeshed (0.0~git20231111.6764465-3) ... 190s Setting up python3-executing (2.1.0-0.1) ... 190s Setting up python3-brotli (1.1.0-2build3) ... 190s Setting up python3-cycler (0.12.1-1) ... 190s Setting up libimagequant0:s390x (2.18.0-1build1) ... 190s Setting up fonts-dejavu-mono (2.37-8) ... 190s Setting up python3-kiwisolver (1.4.7-2build1) ... 190s Setting up libtcl8.6:s390x (8.6.15+dfsg-2) ... 190s Setting up fonts-dejavu-core (2.37-8) ... 190s Setting up libjpeg-turbo8:s390x (2.1.5-3ubuntu2) ... 190s Setting up libgfortran5:s390x (14.2.0-8ubuntu1) ... 190s Setting up python3-pluggy (1.5.0-1) ... 190s Setting up libwebp7:s390x (1.4.0-0.1) ... 190s Setting up python3-traitlets (5.14.3+really5.14.3-1) ... 190s Setting up libxslt1.1:s390x (1.1.39-0exp1ubuntu1) ... 190s Setting up libopenjp2-7:s390x (2.5.0-2ubuntu1) ... 190s 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[09:37:06]: test command1: cd $AUTOPKGTEST_TMP && MPLBACKEND=Agg python3 -m pytest --pyargs imexam 220s autopkgtest [09:37:06]: test command1: [----------------------- 221s ============================= test session starts ============================== 221s platform linux -- Python 3.12.7, pytest-8.3.3, pluggy-1.5.0 221s rootdir: /tmp/autopkgtest.7M1TJZ/autopkgtest_tmp 221s plugins: mock-3.14.0, remotedata-0.4.1, typeguard-4.4.1, cov-5.0.0, hypothesis-6.119.3, astropy-0.11.0, filter-subpackage-0.2.0, doctestplus-1.2.1, arraydiff-0.6.1, astropy-header-0.2.2 221s collected 21 items 221s 222s tests/test_imexamine.py ..sFFxFFs [ 42%] 222s tests/test_util.py ............ [100%] 222s 222s =================================== FAILURES =================================== 222s ________________________________ test_line_fit _________________________________ 222s 222s def test_line_fit(): 222s """Fit a Gaussian1D line to the data.""" 222s plots = Imexamine() 222s in_amp = 3. 222s in_mean = 50. 222s in_stddev = 2. 222s in_const = 20. 222s 222s # Set all the lines to be Gaussians 222s line_gauss = in_const + in_amp * np.exp(-0.5 * ((xx - in_mean) / in_stddev)**2) 222s plots.set_data(line_gauss) 222s > fit = plots.line_fit(50, 50, form='Gaussian1D', genplot=False) 222s 222s /usr/lib/python3/dist-packages/imexam/tests/test_imexamine.py:86: 222s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 222s /usr/lib/python3/dist-packages/imexam/imexamine.py:765: in line_fit 222s amp, xout, yout, sigma, sigmay = self.gauss_center(xx, 222s /usr/lib/python3/dist-packages/imexam/imexamine.py:1007: in gauss_center 222s fit = math_helper.fit_gaussian_2d(chunk, sigma_factor=sigma_factor) 222s /usr/lib/python3/dist-packages/imexam/math_helper.py:254: in fit_gaussian_2d 222s results = fit(model, xx, yy, data) 222s /usr/lib/python3/dist-packages/astropy/modeling/fitting.py:303: in wrapper 222s return func(self, model, x, y, z=z, **kwargs) 222s /usr/lib/python3/dist-packages/astropy/modeling/fitting.py:1434: in __call__ 222s init_values, fitparams, cov_x = self._run_fitter( 222s /usr/lib/python3/dist-packages/astropy/modeling/fitting.py:1509: in _run_fitter 222s fitparams, cov_x, dinfo, mess, ierr = optimize.leastsq( 222s /usr/lib/python3/dist-packages/scipy/optimize/_minpack_py.py:437: in leastsq 222s _check_func('leastsq', 'Dfun', Dfun, x0, args, n, (n, m)) 222s /usr/lib/python3/dist-packages/scipy/optimize/_minpack_py.py:29: in _check_func 222s res = atleast_1d(thefunc(*((x0[:numinputs],) + args))) 222s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 222s 222s params = array([ 3., 15., 15., 3., 3., 0., 20.]) 222s model = 222s weights = 1.0 222s x = array([[ 0., 1., 2., 3., 4., 5., 6., 7., 8., 9., 10., 11., 12., 222s 13., 14., 15., 16., 17., 18., 19., 20..., 10., 11., 12., 222s 13., 14., 15., 16., 17., 18., 19., 20., 21., 22., 23., 24., 25., 222s 26., 27., 28., 29.]]) 222s y = array([[ 0., 0., 0., 0., 0., 0., 0., 0., 0., 0., 0., 0., 0., 222s 0., 0., 0., 0., 0., 0., 0., 0..., 29., 29., 29., 222s 29., 29., 29., 29., 29., 29., 29., 29., 29., 29., 29., 29., 29., 222s 29., 29., 29., 29.]]) 222s z = array([[20. , 20. , 20. , 20.00000005, 20.00000081, 222s 20.00001118, 20.0001202 , 20.00100639...2699, 20.00656247, 20.00100639, 20.0001202 , 222s 20.00001118, 20.00000081, 20.00000005, 20. , 20. ]]) 222s fit_param_indices = None 222s 222s @staticmethod 222s def _wrap_deriv(params, model, weights, x, y, z=None, fit_param_indices=None): 222s """ 222s Wraps the method calculating the Jacobian of the function to account 222s for model constraints. 222s `scipy.optimize.leastsq` expects the function derivative to have the 222s above signature (parlist, (argtuple)). In order to accommodate model 222s constraints, instead of using p directly, we set the parameter list in 222s this function. 222s """ 222s if weights is None: 222s weights = 1.0 222s 222s if model.has_fixed or model.has_tied: 222s # update the parameters with the current values from the fitter 222s fitter_to_model_params(model, params) 222s if z is None: 222s full = np.array(model.fit_deriv(x, *model.parameters)) 222s if not model.col_fit_deriv: 222s full_deriv = np.ravel(weights) * full.T 222s else: 222s full_deriv = np.ravel(weights) * full 222s else: 222s full = np.array( 222s [np.ravel(_) for _ in model.fit_deriv(x, y, *model.parameters)] 222s ) 222s if not model.col_fit_deriv: 222s full_deriv = np.ravel(weights) * full.T 222s else: 222s full_deriv = np.ravel(weights) * full 222s 222s pars = [getattr(model, name) for name in model.param_names] 222s fixed = [par.fixed for par in pars] 222s tied = [par.tied for par in pars] 222s tied = list(np.where([par.tied is not False for par in pars], True, tied)) 222s fix_and_tie = np.logical_or(fixed, tied) 222s ind = np.logical_not(fix_and_tie) 222s 222s if not model.col_fit_deriv: 222s residues = np.asarray(full_deriv[np.nonzero(ind)]).T 222s else: 222s residues = full_deriv[np.nonzero(ind)] 222s 222s return [np.ravel(_) for _ in residues] 222s else: 222s if z is None: 222s fit_deriv = np.array(model.fit_deriv(x, *params)) 222s try: 222s output = np.array( 222s [np.ravel(_) for _ in np.array(weights) * fit_deriv] 222s ) 222s if output.shape != fit_deriv.shape: 222s output = np.array( 222s [np.ravel(_) for _ in np.atleast_2d(weights).T * fit_deriv] 222s ) 222s return output 222s except ValueError: 222s return np.array( 222s [ 222s np.ravel(_) 222s for _ in np.array(weights) * np.moveaxis(fit_deriv, -1, 0) 222s ] 222s ).transpose() 222s else: 222s if not model.col_fit_deriv: 222s return [ 222s np.ravel(_) 222s for _ in ( 222s np.ravel(weights) 222s * np.array(model.fit_deriv(x, y, *params)).T 222s ).T 222s ] 222s return [ 222s np.ravel(_) 222s > for _ in weights * np.array(model.fit_deriv(x, y, *params)) 222s ] 222s E ValueError: setting an array element with a sequence. The requested array has an inhomogeneous shape after 1 dimensions. The detected shape was (7,) + inhomogeneous part. 222s 222s /usr/lib/python3/dist-packages/astropy/modeling/fitting.py:1287: ValueError 222s ----------------------------- Captured stdout call ----------------------------- 222s using model: 222s Name: Gaussian1D 222s N_inputs: 1 222s N_outputs: 1 222s Fittable parameters: ('amplitude', 'mean', 'stddev') 222s ------------------------------ Captured log call ------------------------------- 222s INFO imexam.util:imexamine.py:749 using model: 222s Name: Gaussian1D 222s N_inputs: 1 222s N_outputs: 1 222s Fittable parameters: ('amplitude', 'mean', 'stddev') 222s _______________________________ test_column_fit ________________________________ 222s 222s def test_column_fit(): 222s """Fit a Gaussian1D column to the data.""" 222s plots = Imexamine() 222s in_amp = 3. 222s in_mean = 50. 222s in_stddev = 2. 222s in_const = 20. 222s # Set all the columns to be Gaussians 222s col_gauss = in_const + in_amp * np.exp(-0.5 * ((yy - in_mean) / in_stddev)**2) 222s plots.set_data(col_gauss) 222s > fit = plots.column_fit(50, 50, form='Gaussian1D', genplot=False) 222s 222s /usr/lib/python3/dist-packages/imexam/tests/test_imexamine.py:104: 222s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 222s /usr/lib/python3/dist-packages/imexam/imexamine.py:917: in column_fit 222s result = self.line_fit(x, y, data=data, form=form, 222s /usr/lib/python3/dist-packages/imexam/imexamine.py:765: in line_fit 222s amp, xout, yout, sigma, sigmay = self.gauss_center(xx, 222s /usr/lib/python3/dist-packages/imexam/imexamine.py:1007: in gauss_center 222s fit = math_helper.fit_gaussian_2d(chunk, sigma_factor=sigma_factor) 222s /usr/lib/python3/dist-packages/imexam/math_helper.py:254: in fit_gaussian_2d 222s results = fit(model, xx, yy, data) 222s /usr/lib/python3/dist-packages/astropy/modeling/fitting.py:303: in wrapper 222s return func(self, model, x, y, z=z, **kwargs) 222s /usr/lib/python3/dist-packages/astropy/modeling/fitting.py:1434: in __call__ 222s init_values, fitparams, cov_x = self._run_fitter( 222s /usr/lib/python3/dist-packages/astropy/modeling/fitting.py:1509: in _run_fitter 222s fitparams, cov_x, dinfo, mess, ierr = optimize.leastsq( 222s /usr/lib/python3/dist-packages/scipy/optimize/_minpack_py.py:437: in leastsq 222s _check_func('leastsq', 'Dfun', Dfun, x0, args, n, (n, m)) 222s /usr/lib/python3/dist-packages/scipy/optimize/_minpack_py.py:29: in _check_func 222s res = atleast_1d(thefunc(*((x0[:numinputs],) + args))) 222s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 222s 222s params = array([ 3., 15., 15., 3., 3., 0., 20.]) 222s model = 222s weights = 1.0 222s x = array([[ 0., 1., 2., 3., 4., 5., 6., 7., 8., 9., 10., 11., 12., 222s 13., 14., 15., 16., 17., 18., 19., 20..., 10., 11., 12., 222s 13., 14., 15., 16., 17., 18., 19., 20., 21., 22., 23., 24., 25., 222s 26., 27., 28., 29.]]) 222s y = array([[ 0., 0., 0., 0., 0., 0., 0., 0., 0., 0., 0., 0., 0., 222s 0., 0., 0., 0., 0., 0., 0., 0..., 29., 29., 29., 222s 29., 29., 29., 29., 29., 29., 29., 29., 29., 29., 29., 29., 29., 222s 29., 29., 29., 29.]]) 222s z = array([[20. , 20. , 20. , 20. , 20. , 222s 20. , 20. , 20. ... , 20. , 20. , 20. , 222s 20. , 20. , 20. , 20. , 20. ]]) 222s fit_param_indices = None 222s 222s @staticmethod 222s def _wrap_deriv(params, model, weights, x, y, z=None, fit_param_indices=None): 222s """ 222s Wraps the method calculating the Jacobian of the function to account 222s for model constraints. 222s `scipy.optimize.leastsq` expects the function derivative to have the 222s above signature (parlist, (argtuple)). In order to accommodate model 222s constraints, instead of using p directly, we set the parameter list in 222s this function. 222s """ 222s if weights is None: 222s weights = 1.0 222s 222s if model.has_fixed or model.has_tied: 222s # update the parameters with the current values from the fitter 222s fitter_to_model_params(model, params) 222s if z is None: 222s full = np.array(model.fit_deriv(x, *model.parameters)) 222s if not model.col_fit_deriv: 222s full_deriv = np.ravel(weights) * full.T 222s else: 222s full_deriv = np.ravel(weights) * full 222s else: 222s full = np.array( 222s [np.ravel(_) for _ in model.fit_deriv(x, y, *model.parameters)] 222s ) 222s if not model.col_fit_deriv: 222s full_deriv = np.ravel(weights) * full.T 222s else: 222s full_deriv = np.ravel(weights) * full 222s 222s pars = [getattr(model, name) for name in model.param_names] 222s fixed = [par.fixed for par in pars] 222s tied = [par.tied for par in pars] 222s tied = list(np.where([par.tied is not False for par in pars], True, tied)) 222s fix_and_tie = np.logical_or(fixed, tied) 222s ind = np.logical_not(fix_and_tie) 222s 222s if not model.col_fit_deriv: 222s residues = np.asarray(full_deriv[np.nonzero(ind)]).T 222s else: 222s residues = full_deriv[np.nonzero(ind)] 222s 222s return [np.ravel(_) for _ in residues] 222s else: 222s if z is None: 222s fit_deriv = np.array(model.fit_deriv(x, *params)) 222s try: 222s output = np.array( 222s [np.ravel(_) for _ in np.array(weights) * fit_deriv] 222s ) 222s if output.shape != fit_deriv.shape: 222s output = np.array( 222s [np.ravel(_) for _ in np.atleast_2d(weights).T * fit_deriv] 222s ) 222s return output 222s except ValueError: 222s return np.array( 222s [ 222s np.ravel(_) 222s for _ in np.array(weights) * np.moveaxis(fit_deriv, -1, 0) 222s ] 222s ).transpose() 222s else: 222s if not model.col_fit_deriv: 222s return [ 222s np.ravel(_) 222s for _ in ( 222s np.ravel(weights) 222s * np.array(model.fit_deriv(x, y, *params)).T 222s ).T 222s ] 222s return [ 222s np.ravel(_) 222s > for _ in weights * np.array(model.fit_deriv(x, y, *params)) 222s ] 222s E ValueError: setting an array element with a sequence. The requested array has an inhomogeneous shape after 1 dimensions. The detected shape was (7,) + inhomogeneous part. 222s 222s /usr/lib/python3/dist-packages/astropy/modeling/fitting.py:1287: ValueError 222s ----------------------------- Captured stdout call ----------------------------- 222s using model: 222s Name: Gaussian1D 222s N_inputs: 1 222s N_outputs: 1 222s Fittable parameters: ('amplitude', 'mean', 'stddev') 222s ------------------------------ Captured log call ------------------------------- 222s INFO imexam.util:imexamine.py:749 using model: 222s Name: Gaussian1D 222s N_inputs: 1 222s N_outputs: 1 222s Fittable parameters: ('amplitude', 'mean', 'stddev') 222s _____________________________ test_radial_profile ______________________________ 222s 222s def test_radial_profile(): 222s """Test the radial profile function 222s No background subtraction 222s individual pixel results used 222s """ 222s from astropy.convolution import Gaussian2DKernel 222s data = Gaussian2DKernel(1.5, x_size=25, y_size=25) 222s xx, yy = np.meshgrid(np.arange(25), np.arange(25)) 222s x0, y0 = np.where(data.array == data.array.max()) 222s 222s rad_in = np.sqrt((xx - x0)**2 + (yy - y0)**2) 222s rad_in = rad_in.ravel() 222s flux_in = data.array.ravel() 222s 222s order = np.argsort(rad_in) 222s rad_in = rad_in[order] 222s flux_in = flux_in[order] 222s 222s plots = Imexamine() 222s plots.set_data(data.array) 222s 222s plots.radial_profile_pars['pixels'][0] = True 222s plots.radial_profile_pars['background'][0] = False 222s plots.radial_profile_pars['clip'][0] = False 222s > rad_out, flux_out = plots.radial_profile(x0, y0, genplot=False) 222s 222s /usr/lib/python3/dist-packages/imexam/tests/test_imexamine.py:160: 222s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 222s /usr/lib/python3/dist-packages/imexam/imexamine.py:1102: in radial_profile 222s amp, centerx, centery, sigmax, sigmay = self.gauss_center(xx, yy, data, delta=datasize) 222s /usr/lib/python3/dist-packages/imexam/imexamine.py:1007: in gauss_center 222s fit = math_helper.fit_gaussian_2d(chunk, sigma_factor=sigma_factor) 222s /usr/lib/python3/dist-packages/imexam/math_helper.py:254: in fit_gaussian_2d 222s results = fit(model, xx, yy, data) 222s /usr/lib/python3/dist-packages/astropy/modeling/fitting.py:303: in wrapper 222s return func(self, model, x, y, z=z, **kwargs) 222s /usr/lib/python3/dist-packages/astropy/modeling/fitting.py:1434: in __call__ 222s init_values, fitparams, cov_x = self._run_fitter( 222s /usr/lib/python3/dist-packages/astropy/modeling/fitting.py:1509: in _run_fitter 222s fitparams, cov_x, dinfo, mess, ierr = optimize.leastsq( 222s /usr/lib/python3/dist-packages/scipy/optimize/_minpack_py.py:437: in leastsq 222s _check_func('leastsq', 'Dfun', Dfun, x0, args, n, (n, m)) 222s /usr/lib/python3/dist-packages/scipy/optimize/_minpack_py.py:29: in _check_func 222s res = atleast_1d(thefunc(*((x0[:numinputs],) + args))) 222s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 222s 222s params = array([7.06778109e-02, 4.00000000e+00, 4.00000000e+00, 3.00000000e+00, 222s 3.00000000e+00, 0.00000000e+00, 5.77193322e-05]) 222s model = 222s weights = 1.0 222s x = array([[0., 1., 2., 3., 4., 5., 6., 7.], 222s [0., 1., 2., 3., 4., 5., 6., 7.], 222s [0., 1., 2., 3., 4., 5., 6., ... [0., 1., 2., 3., 4., 5., 6., 7.], 222s [0., 1., 2., 3., 4., 5., 6., 7.], 222s [0., 1., 2., 3., 4., 5., 6., 7.]]) 222s y = array([[0., 0., 0., 0., 0., 0., 0., 0.], 222s [1., 1., 1., 1., 1., 1., 1., 1.], 222s [2., 2., 2., 2., 2., 2., 2., ... [5., 5., 5., 5., 5., 5., 5., 5.], 222s [6., 6., 6., 6., 6., 6., 6., 6.], 222s [7., 7., 7., 7., 7., 7., 7., 7.]]) 222s z = array([[5.77193322e-05, 2.73457911e-04, 8.30691786e-04, 1.61796667e-03, 222s 2.02059585e-03, 1.61796667e-03, 8.3069...29556643e-03, 3.93558331e-03, 7.66546959e-03, 222s 9.57301302e-03, 7.66546959e-03, 3.93558331e-03, 1.29556643e-03]]) 222s fit_param_indices = None 222s 222s @staticmethod 222s def _wrap_deriv(params, model, weights, x, y, z=None, fit_param_indices=None): 222s """ 222s Wraps the method calculating the Jacobian of the function to account 222s for model constraints. 222s `scipy.optimize.leastsq` expects the function derivative to have the 222s above signature (parlist, (argtuple)). In order to accommodate model 222s constraints, instead of using p directly, we set the parameter list in 222s this function. 222s """ 222s if weights is None: 222s weights = 1.0 222s 222s if model.has_fixed or model.has_tied: 222s # update the parameters with the current values from the fitter 222s fitter_to_model_params(model, params) 222s if z is None: 222s full = np.array(model.fit_deriv(x, *model.parameters)) 222s if not model.col_fit_deriv: 222s full_deriv = np.ravel(weights) * full.T 222s else: 222s full_deriv = np.ravel(weights) * full 222s else: 222s full = np.array( 222s [np.ravel(_) for _ in model.fit_deriv(x, y, *model.parameters)] 222s ) 222s if not model.col_fit_deriv: 222s full_deriv = np.ravel(weights) * full.T 222s else: 222s full_deriv = np.ravel(weights) * full 222s 222s pars = [getattr(model, name) for name in model.param_names] 222s fixed = [par.fixed for par in pars] 222s tied = [par.tied for par in pars] 222s tied = list(np.where([par.tied is not False for par in pars], True, tied)) 222s fix_and_tie = np.logical_or(fixed, tied) 222s ind = np.logical_not(fix_and_tie) 222s 222s if not model.col_fit_deriv: 222s residues = np.asarray(full_deriv[np.nonzero(ind)]).T 222s else: 222s residues = full_deriv[np.nonzero(ind)] 222s 222s return [np.ravel(_) for _ in residues] 222s else: 222s if z is None: 222s fit_deriv = np.array(model.fit_deriv(x, *params)) 222s try: 222s output = np.array( 222s [np.ravel(_) for _ in np.array(weights) * fit_deriv] 222s ) 222s if output.shape != fit_deriv.shape: 222s output = np.array( 222s [np.ravel(_) for _ in np.atleast_2d(weights).T * fit_deriv] 222s ) 222s return output 222s except ValueError: 222s return np.array( 222s [ 222s np.ravel(_) 222s for _ in np.array(weights) * np.moveaxis(fit_deriv, -1, 0) 222s ] 222s ).transpose() 222s else: 222s if not model.col_fit_deriv: 222s return [ 222s np.ravel(_) 222s for _ in ( 222s np.ravel(weights) 222s * np.array(model.fit_deriv(x, y, *params)).T 222s ).T 222s ] 222s return [ 222s np.ravel(_) 222s > for _ in weights * np.array(model.fit_deriv(x, y, *params)) 222s ] 222s E ValueError: setting an array element with a sequence. The requested array has an inhomogeneous shape after 1 dimensions. The detected shape was (7,) + inhomogeneous part. 222s 222s /usr/lib/python3/dist-packages/astropy/modeling/fitting.py:1287: ValueError 222s ________________________ test_radial_profile_cumulative ________________________ 222s 222s def test_radial_profile_cumulative(): 222s """Test the radial profile function 222s without background subtraction 222s with each pixel integer binned 222s """ 222s from astropy.convolution import Gaussian2DKernel 222s ksize = 25 222s data = Gaussian2DKernel(1.5, x_size=ksize, y_size=ksize) 222s xx, yy = np.meshgrid(np.arange(ksize), np.arange(ksize)) 222s x0, y0 = np.where(data.array == data.array.max()) 222s rad_in = np.sqrt((xx - x0)**2 + (yy - y0)**2) 222s 222s rad_in = rad_in.ravel() 222s flux_in = data.array.ravel() 222s 222s indices = np.argsort(rad_in) 222s rad_in = rad_in[indices] 222s flux_in = flux_in[indices] 222s 222s # now bin the radflux like we expect 222s rad_in = rad_in.astype(int) 222s flux_in = np.bincount(rad_in, flux_in) / np.bincount(rad_in) 222s rad_in = np.arange(len(flux_in)) 222s assert (data.array[x0, y0] == flux_in[0]) 222s 222s # check the binned results 222s plots = Imexamine() 222s plots.set_data(data.array) 222s plots.radial_profile_pars['pixels'][0] = False 222s plots.radial_profile_pars['background'][0] = False 222s plots.radial_profile_pars['clip'][0] = False 222s > rad_out, flux_out = plots.radial_profile(x0, y0, genplot=False) 222s 222s /usr/lib/python3/dist-packages/imexam/tests/test_imexamine.py:206: 222s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 222s /usr/lib/python3/dist-packages/imexam/imexamine.py:1102: in radial_profile 222s amp, centerx, centery, sigmax, sigmay = self.gauss_center(xx, yy, data, delta=datasize) 222s /usr/lib/python3/dist-packages/imexam/imexamine.py:1007: in gauss_center 222s fit = math_helper.fit_gaussian_2d(chunk, sigma_factor=sigma_factor) 222s /usr/lib/python3/dist-packages/imexam/math_helper.py:254: in fit_gaussian_2d 222s results = fit(model, xx, yy, data) 222s /usr/lib/python3/dist-packages/astropy/modeling/fitting.py:303: in wrapper 222s return func(self, model, x, y, z=z, **kwargs) 222s /usr/lib/python3/dist-packages/astropy/modeling/fitting.py:1434: in __call__ 222s init_values, fitparams, cov_x = self._run_fitter( 222s /usr/lib/python3/dist-packages/astropy/modeling/fitting.py:1509: in _run_fitter 222s fitparams, cov_x, dinfo, mess, ierr = optimize.leastsq( 222s /usr/lib/python3/dist-packages/scipy/optimize/_minpack_py.py:437: in leastsq 222s _check_func('leastsq', 'Dfun', Dfun, x0, args, n, (n, m)) 222s /usr/lib/python3/dist-packages/scipy/optimize/_minpack_py.py:29: in _check_func 222s res = atleast_1d(thefunc(*((x0[:numinputs],) + args))) 222s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 222s 222s params = array([7.06778109e-02, 4.00000000e+00, 4.00000000e+00, 3.00000000e+00, 222s 3.00000000e+00, 0.00000000e+00, 5.77193322e-05]) 222s model = 222s weights = 1.0 222s x = array([[0., 1., 2., 3., 4., 5., 6., 7.], 222s [0., 1., 2., 3., 4., 5., 6., 7.], 222s [0., 1., 2., 3., 4., 5., 6., ... [0., 1., 2., 3., 4., 5., 6., 7.], 222s [0., 1., 2., 3., 4., 5., 6., 7.], 222s [0., 1., 2., 3., 4., 5., 6., 7.]]) 222s y = array([[0., 0., 0., 0., 0., 0., 0., 0.], 222s [1., 1., 1., 1., 1., 1., 1., 1.], 222s [2., 2., 2., 2., 2., 2., 2., ... [5., 5., 5., 5., 5., 5., 5., 5.], 222s [6., 6., 6., 6., 6., 6., 6., 6.], 222s [7., 7., 7., 7., 7., 7., 7., 7.]]) 222s z = array([[5.77193322e-05, 2.73457911e-04, 8.30691786e-04, 1.61796667e-03, 222s 2.02059585e-03, 1.61796667e-03, 8.3069...29556643e-03, 3.93558331e-03, 7.66546959e-03, 222s 9.57301302e-03, 7.66546959e-03, 3.93558331e-03, 1.29556643e-03]]) 222s fit_param_indices = None 222s 222s @staticmethod 222s def _wrap_deriv(params, model, weights, x, y, z=None, fit_param_indices=None): 222s """ 222s Wraps the method calculating the Jacobian of the function to account 222s for model constraints. 222s `scipy.optimize.leastsq` expects the function derivative to have the 222s above signature (parlist, (argtuple)). In order to accommodate model 222s constraints, instead of using p directly, we set the parameter list in 222s this function. 222s """ 222s if weights is None: 222s weights = 1.0 222s 222s if model.has_fixed or model.has_tied: 222s # update the parameters with the current values from the fitter 222s fitter_to_model_params(model, params) 222s if z is None: 222s full = np.array(model.fit_deriv(x, *model.parameters)) 222s if not model.col_fit_deriv: 222s full_deriv = np.ravel(weights) * full.T 222s else: 222s full_deriv = np.ravel(weights) * full 222s else: 222s full = np.array( 222s [np.ravel(_) for _ in model.fit_deriv(x, y, *model.parameters)] 222s ) 222s if not model.col_fit_deriv: 222s full_deriv = np.ravel(weights) * full.T 222s else: 222s full_deriv = np.ravel(weights) * full 222s 222s pars = [getattr(model, name) for name in model.param_names] 222s fixed = [par.fixed for par in pars] 222s tied = [par.tied for par in pars] 222s tied = list(np.where([par.tied is not False for par in pars], True, tied)) 222s fix_and_tie = np.logical_or(fixed, tied) 222s ind = np.logical_not(fix_and_tie) 222s 222s if not model.col_fit_deriv: 222s residues = np.asarray(full_deriv[np.nonzero(ind)]).T 222s else: 222s residues = full_deriv[np.nonzero(ind)] 222s 222s return [np.ravel(_) for _ in residues] 222s else: 222s if z is None: 222s fit_deriv = np.array(model.fit_deriv(x, *params)) 222s try: 222s output = np.array( 222s [np.ravel(_) for _ in np.array(weights) * fit_deriv] 222s ) 222s if output.shape != fit_deriv.shape: 222s output = np.array( 222s [np.ravel(_) for _ in np.atleast_2d(weights).T * fit_deriv] 222s ) 222s return output 222s except ValueError: 222s return np.array( 222s [ 222s np.ravel(_) 222s for _ in np.array(weights) * np.moveaxis(fit_deriv, -1, 0) 222s ] 222s ).transpose() 222s else: 222s if not model.col_fit_deriv: 222s return [ 222s np.ravel(_) 222s for _ in ( 222s np.ravel(weights) 222s * np.array(model.fit_deriv(x, y, *params)).T 222s ).T 222s ] 222s return [ 222s np.ravel(_) 222s > for _ in weights * np.array(model.fit_deriv(x, y, *params)) 222s ] 222s E ValueError: setting an array element with a sequence. The requested array has an inhomogeneous shape after 1 dimensions. The detected shape was (7,) + inhomogeneous part. 222s 222s /usr/lib/python3/dist-packages/astropy/modeling/fitting.py:1287: ValueError 222s =============================== warnings summary =============================== 222s ../../../usr/lib/python3/dist-packages/imexam/__init__.py:12 222s /usr/lib/python3/dist-packages/imexam/__init__.py:12: DeprecationWarning: pkg_resources is deprecated as an API. See https://setuptools.pypa.io/en/latest/pkg_resources.html 222s from pkg_resources import get_distribution, DistributionNotFound 222s 222s tests/test_imexamine.py::test_radial_profile 222s tests/test_imexamine.py::test_radial_profile_cumulative 222s /usr/lib/python3/dist-packages/imexam/imexamine.py:1097: DeprecationWarning: Conversion of an array with ndim > 0 to a scalar is deprecated, and will error in future. Ensure you extract a single element from your array before performing this operation. (Deprecated NumPy 1.25.) 222s xx = int(x) 222s 222s tests/test_imexamine.py::test_radial_profile 222s tests/test_imexamine.py::test_radial_profile_cumulative 222s /usr/lib/python3/dist-packages/imexam/imexamine.py:1098: DeprecationWarning: Conversion of an array with ndim > 0 to a scalar is deprecated, and will error in future. Ensure you extract a single element from your array before performing this operation. (Deprecated NumPy 1.25.) 222s yy = int(y) 222s 222s -- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html 222s =========================== short test summary info ============================ 222s FAILED tests/test_imexamine.py::test_line_fit - ValueError: setting an array ... 222s FAILED tests/test_imexamine.py::test_column_fit - ValueError: setting an arra... 222s FAILED tests/test_imexamine.py::test_radial_profile - ValueError: setting an ... 222s FAILED tests/test_imexamine.py::test_radial_profile_cumulative - ValueError: ... 222s ======== 4 failed, 14 passed, 2 skipped, 1 xfailed, 5 warnings in 1.96s ======== 223s autopkgtest [09:37:09]: test command1: -----------------------] 223s command1 FAIL non-zero exit status 1 223s autopkgtest [09:37:09]: test command1: - - - - - - - - - - results - - - - - - - - - - 223s autopkgtest [09:37:09]: @@@@@@@@@@@@@@@@@@@@ summary 223s command1 FAIL non-zero exit status 1 235s virt: nova [W] Using flock in prodstack6-s390x 235s virt: flock: timeout while waiting to get lock 235s virt: Creating nova instance adt-plucky-s390x-imexam-20241126-093325-juju-7f2275-prod-proposed-migration-environment-2-16e746c1-812a-4e71-ae16-401d433ce2d9 from image adt/ubuntu-plucky-s390x-server-20241119.img (UUID 0efe7a44-24e0-44d8-af6e-8997f14b87bd)...