0s autopkgtest [11:29:56]: starting date and time: 2024-11-13 11:29:56+0000 0s autopkgtest [11:29:56]: git checkout: 6f3be7a8 Fix armhf LXD image generation for plucky 0s autopkgtest [11:29:56]: host juju-7f2275-prod-proposed-migration-environment-15; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.zmdy4aaz/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:python3-defaults,src:python3-stdlib-extensions --apt-upgrade idseq-bench --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 '--env=ADT_TEST_TRIGGERS=python3-defaults/3.12.7-1 python3-stdlib-extensions/3.12.7-1' -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest-s390x --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-15@bos03-s390x-13.secgroup --name adt-plucky-s390x-idseq-bench-20241113-112956-juju-7f2275-prod-proposed-migration-environment-15-67b48026-786d-4e06-9d2f-5fc7fda5b141 --image adt/ubuntu-plucky-s390x-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-15 --net-id=net_prod-proposed-migration-s390x -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,keyserver.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/ 182s autopkgtest [11:32:58]: testbed dpkg architecture: s390x 182s autopkgtest [11:32:58]: testbed apt version: 2.9.8 182s autopkgtest [11:32:58]: @@@@@@@@@@@@@@@@@@@@ test bed setup 183s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease [73.9 kB] 184s Get:2 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse Sources [15.3 kB] 184s Get:3 http://ftpmaster.internal/ubuntu plucky-proposed/restricted Sources [7016 B] 184s Get:4 http://ftpmaster.internal/ubuntu plucky-proposed/main Sources [76.4 kB] 184s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/universe Sources [849 kB] 184s Get:6 http://ftpmaster.internal/ubuntu plucky-proposed/main s390x Packages [85.8 kB] 184s Get:7 http://ftpmaster.internal/ubuntu plucky-proposed/universe s390x Packages [565 kB] 184s Get:8 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse s390x Packages [16.6 kB] 184s Fetched 1689 kB in 1s (2093 kB/s) 184s Reading package lists... 188s Reading package lists... 189s Building dependency tree... 189s Reading state information... 189s Calculating upgrade... 189s The following NEW packages will be installed: 189s python3.13-gdbm 189s The following packages will be upgraded: 189s libgpgme11t64 libpython3-stdlib python3 python3-gdbm python3-minimal 189s 5 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. 189s Need to get 252 kB of archives. 189s After this operation, 98.3 kB of additional disk space will be used. 189s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed/main s390x python3-minimal s390x 3.12.7-1 [27.4 kB] 189s Get:2 http://ftpmaster.internal/ubuntu plucky-proposed/main s390x python3 s390x 3.12.7-1 [24.0 kB] 189s Get:3 http://ftpmaster.internal/ubuntu plucky-proposed/main s390x libpython3-stdlib s390x 3.12.7-1 [10.0 kB] 189s Get:4 http://ftpmaster.internal/ubuntu plucky/main s390x python3.13-gdbm s390x 3.13.0-2 [31.0 kB] 189s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/main s390x python3-gdbm s390x 3.12.7-1 [8642 B] 189s Get:6 http://ftpmaster.internal/ubuntu plucky/main s390x libgpgme11t64 s390x 1.23.2-5ubuntu4 [151 kB] 189s Fetched 252 kB in 0s (584 kB/s) 190s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 55510 files and directories currently installed.) 190s Preparing to unpack .../python3-minimal_3.12.7-1_s390x.deb ... 190s Unpacking python3-minimal (3.12.7-1) over (3.12.6-0ubuntu1) ... 190s Setting up python3-minimal (3.12.7-1) ... 190s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 55510 files and directories currently installed.) 190s Preparing to unpack .../python3_3.12.7-1_s390x.deb ... 190s Unpacking python3 (3.12.7-1) over (3.12.6-0ubuntu1) ... 190s Preparing to unpack .../libpython3-stdlib_3.12.7-1_s390x.deb ... 190s Unpacking libpython3-stdlib:s390x (3.12.7-1) over (3.12.6-0ubuntu1) ... 190s Selecting previously unselected package python3.13-gdbm. 190s Preparing to unpack .../python3.13-gdbm_3.13.0-2_s390x.deb ... 190s Unpacking python3.13-gdbm (3.13.0-2) ... 190s Preparing to unpack .../python3-gdbm_3.12.7-1_s390x.deb ... 190s Unpacking python3-gdbm:s390x (3.12.7-1) over (3.12.6-1ubuntu1) ... 190s Preparing to unpack .../libgpgme11t64_1.23.2-5ubuntu4_s390x.deb ... 190s Unpacking libgpgme11t64:s390x (1.23.2-5ubuntu4) over (1.18.0-4.1ubuntu4) ... 190s Setting up libgpgme11t64:s390x (1.23.2-5ubuntu4) ... 190s Setting up python3.13-gdbm (3.13.0-2) ... 190s Setting up libpython3-stdlib:s390x (3.12.7-1) ... 190s Setting up python3 (3.12.7-1) ... 190s Setting up python3-gdbm:s390x (3.12.7-1) ... 190s Processing triggers for man-db (2.12.1-3) ... 191s Processing triggers for libc-bin (2.40-1ubuntu3) ... 191s Reading package lists... 191s Building dependency tree... 191s Reading state information... 191s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 191s Hit:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease 192s Hit:2 http://ftpmaster.internal/ubuntu plucky InRelease 192s Hit:3 http://ftpmaster.internal/ubuntu plucky-updates InRelease 192s Hit:4 http://ftpmaster.internal/ubuntu plucky-security InRelease 193s Reading package lists... 193s Reading package lists... 193s Building dependency tree... 193s Reading state information... 193s Calculating upgrade... 193s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 193s Reading package lists... 193s Building dependency tree... 193s Reading state information... 193s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 197s autopkgtest [11:33:13]: testbed running kernel: Linux 6.11.0-8-generic #8-Ubuntu SMP Mon Sep 16 12:49:35 UTC 2024 197s autopkgtest [11:33:13]: @@@@@@@@@@@@@@@@@@@@ apt-source idseq-bench 200s Get:1 http://ftpmaster.internal/ubuntu plucky/universe idseq-bench 0.0~git20210602.27fb6dc-1 (dsc) [2356 B] 200s Get:2 http://ftpmaster.internal/ubuntu plucky/universe idseq-bench 0.0~git20210602.27fb6dc-1 (tar) [17.3 kB] 200s Get:3 http://ftpmaster.internal/ubuntu plucky/universe idseq-bench 0.0~git20210602.27fb6dc-1 (diff) [4432 B] 200s gpgv: Signature made Mon Jan 17 12:05:35 2022 UTC 200s gpgv: using RSA key 3E99A526F5DCC0CBBF1CEEA600BAE74B343369F1 200s gpgv: issuer "nilesh@debian.org" 200s gpgv: Can't check signature: No public key 200s dpkg-source: warning: cannot verify inline signature for ./idseq-bench_0.0~git20210602.27fb6dc-1.dsc: no acceptable signature found 200s autopkgtest [11:33:16]: testing package idseq-bench version 0.0~git20210602.27fb6dc-1 201s autopkgtest [11:33:17]: build not needed 202s autopkgtest [11:33:18]: test run-unit-test: preparing testbed 205s Reading package lists... 205s Building dependency tree... 205s Reading state information... 205s Starting pkgProblemResolver with broken count: 1 205s Starting 2 pkgProblemResolver with broken count: 1 205s Investigating (0) insilicoseq:s390x < none -> 2.0.1-1 @un puN Ib > 205s Broken insilicoseq:s390x Depends on python3-biopython:s390x < none | 1.84+dfsg-4 @un uH > 205s Considering python3-biopython:s390x 1 as a solution to insilicoseq:s390x 1 205s Re-Instated libfreetype6:s390x 205s Re-Instated libimagequant0:s390x 205s Re-Instated libjpeg-turbo8:s390x 205s Re-Instated libjpeg8:s390x 205s Re-Instated liblcms2-2:s390x 205s Re-Instated libopenjp2-7:s390x 205s Re-Instated libgraphite2-3:s390x 205s Re-Instated libharfbuzz0b:s390x 205s Re-Instated libraqm0:s390x 205s Re-Instated libdeflate0:s390x 205s Re-Instated libjbig0:s390x 205s Re-Instated libsharpyuv0:s390x 205s Re-Instated libwebp7:s390x 205s Re-Instated libtiff6:s390x 205s Re-Instated libwebpdemux2:s390x 205s Re-Instated libwebpmux3:s390x 205s Re-Instated python3-pil:s390x 205s Re-Instated fonts-dejavu-mono:s390x 205s Re-Instated fonts-dejavu-core:s390x 205s Re-Instated fontconfig-config:s390x 205s Re-Instated libfontconfig1:s390x 205s Re-Instated libpixman-1-0:s390x 205s Re-Instated libxcb-render0:s390x 205s Re-Instated libxcb-shm0:s390x 205s Re-Instated libxrender1:s390x 205s Re-Instated libcairo2:s390x 205s Re-Instated python3-cairo:s390x 205s Re-Instated python3-freetype:s390x 205s Re-Instated python3-rlpycairo:s390x 205s Re-Instated libfontenc1:s390x 205s Re-Instated x11-common:s390x 205s Re-Instated xfonts-encodings:s390x 205s Re-Instated xfonts-utils:s390x 205s Re-Instated fonts-urw-base35:s390x 205s Re-Instated python3-reportlab:s390x 205s Re-Instated sgml-base:s390x 205s Re-Instated xml-core:s390x 205s Re-Instated w3c-sgml-lib:s390x 205s Re-Instated python3-biopython:s390x 205s Broken insilicoseq:s390x Depends on python3-pysam:s390x < none @un H > 205s Done 205s Some packages could not be installed. This may mean that you have 205s requested an impossible situation or if you are using the unstable 205s distribution that some required packages have not yet been created 205s or been moved out of Incoming. 205s The following information may help to resolve the situation: 205s 205s The following packages have unmet dependencies: 205s insilicoseq : Depends: python3-pysam but it is not installable 205s E: Unable to correct problems, you have held broken packages. 205s autopkgtest: WARNING: Test dependencies are unsatisfiable with using apt pinning. Retrying with using all packages from plucky-proposed 206s Reading package lists... 206s Building dependency tree... 206s Reading state information... 206s Starting pkgProblemResolver with broken count: 1 206s Starting 2 pkgProblemResolver with broken count: 1 206s Investigating (0) insilicoseq:s390x < none -> 2.0.1-1 @un puN Ib > 206s Broken insilicoseq:s390x Depends on python3-biopython:s390x < none | 1.84+dfsg-4 @un uH > 206s Considering python3-biopython:s390x 1 as a solution to insilicoseq:s390x 1 206s Re-Instated libfreetype6:s390x 206s Re-Instated libimagequant0:s390x 206s Re-Instated libjpeg-turbo8:s390x 206s Re-Instated libjpeg8:s390x 206s Re-Instated liblcms2-2:s390x 206s Re-Instated libopenjp2-7:s390x 206s Re-Instated libgraphite2-3:s390x 206s Re-Instated libharfbuzz0b:s390x 206s Re-Instated libraqm0:s390x 206s Re-Instated libdeflate0:s390x 206s Re-Instated libjbig0:s390x 206s Re-Instated libsharpyuv0:s390x 206s Re-Instated libwebp7:s390x 206s Re-Instated libtiff6:s390x 206s Re-Instated libwebpdemux2:s390x 206s Re-Instated libwebpmux3:s390x 206s Re-Instated python3-pil:s390x 206s Re-Instated fonts-dejavu-mono:s390x 206s Re-Instated fonts-dejavu-core:s390x 206s Re-Instated fontconfig-config:s390x 206s Re-Instated libfontconfig1:s390x 206s Re-Instated libpixman-1-0:s390x 206s Re-Instated libxcb-render0:s390x 206s Re-Instated libxcb-shm0:s390x 206s Re-Instated libxrender1:s390x 206s Re-Instated libcairo2:s390x 206s Re-Instated python3-cairo:s390x 206s Re-Instated python3-freetype:s390x 206s Re-Instated python3-rlpycairo:s390x 206s Re-Instated libfontenc1:s390x 206s Re-Instated x11-common:s390x 206s Re-Instated xfonts-encodings:s390x 206s Re-Instated xfonts-utils:s390x 206s Re-Instated fonts-urw-base35:s390x 206s Re-Instated python3-reportlab:s390x 206s Re-Instated sgml-base:s390x 206s Re-Instated xml-core:s390x 206s Re-Instated w3c-sgml-lib:s390x 206s Re-Instated python3-biopython:s390x 206s Broken insilicoseq:s390x Depends on python3-pysam:s390x < none @un H > 206s Done 206s Some packages could not be installed. This may mean that you have 206s requested an impossible situation or if you are using the unstable 206s distribution that some required packages have not yet been created 206s or been moved out of Incoming. 206s The following information may help to resolve the situation: 206s 206s The following packages have unmet dependencies: 206s insilicoseq : Depends: python3-pysam but it is not installable 206s E: Unable to correct problems, you have held broken packages. 206s autopkgtest: WARNING: Test dependencies are unsatisfiable - calling apt install on test deps directly for further data about failing dependencies in test logs 206s run-unit-test FAIL badpkg 206s blame: idseq-bench 206s badpkg: Test dependencies are unsatisfiable. A common reason is that your testbed is out of date with respect to the archive, and you need to use a current testbed or run apt-get update or use -U. 206s autopkgtest [11:33:22]: @@@@@@@@@@@@@@@@@@@@ summary 206s run-unit-test FAIL badpkg 206s blame: idseq-bench 206s badpkg: Test dependencies are unsatisfiable. A common reason is that your testbed is out of date with respect to the archive, and you need to use a current testbed or run apt-get update or use -U. 220s nova [W] Using flock in prodstack6-s390x 220s Creating nova instance adt-plucky-s390x-idseq-bench-20241113-112956-juju-7f2275-prod-proposed-migration-environment-15-67b48026-786d-4e06-9d2f-5fc7fda5b141 from image adt/ubuntu-plucky-s390x-server-20241113.img (UUID e740277e-1f72-40ae-bfbe-46030537c71c)...