0s autopkgtest [22:32:20]: starting date and time: 2024-11-01 22:32:20+0000 0s autopkgtest [22:32:20]: git checkout: 6f3be7a8 Fix armhf LXD image generation for plucky 0s autopkgtest [22:32:20]: host juju-7f2275-prod-proposed-migration-environment-2; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.2vgkza0m/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:rhino --apt-upgrade htsjdk --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=rhino/1.7.15-1 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest-s390x --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-2@bos03-s390x-18.secgroup --name adt-plucky-s390x-htsjdk-20241101-223219-juju-7f2275-prod-proposed-migration-environment-2-3c158881-6798-498a-9d05-b81ff1e6b81c --image adt/ubuntu-plucky-s390x-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-2 --net-id=net_prod-proposed-migration-s390x -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,keyserver.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/ 104s autopkgtest [22:34:04]: testbed dpkg architecture: s390x 104s autopkgtest [22:34:04]: testbed apt version: 2.9.8 104s autopkgtest [22:34:04]: @@@@@@@@@@@@@@@@@@@@ test bed setup 105s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease [73.9 kB] 105s Get:2 http://ftpmaster.internal/ubuntu plucky-proposed/restricted Sources [7016 B] 105s Get:3 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse Sources [41.0 kB] 105s Get:4 http://ftpmaster.internal/ubuntu plucky-proposed/main Sources [176 kB] 105s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/universe Sources [2639 kB] 105s Get:6 http://ftpmaster.internal/ubuntu plucky-proposed/main s390x Packages [213 kB] 105s Get:7 http://ftpmaster.internal/ubuntu plucky-proposed/universe s390x Packages [1863 kB] 105s Get:8 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse s390x Packages [33.3 kB] 106s Fetched 5045 kB in 1s (4154 kB/s) 106s Reading package lists... 108s Reading package lists... 108s Building dependency tree... 108s Reading state information... 108s Calculating upgrade... 108s The following packages will be upgraded: 108s libblockdev-crypto3 libblockdev-fs3 libblockdev-loop3 libblockdev-mdraid3 108s libblockdev-nvme3 libblockdev-part3 libblockdev-swap3 libblockdev-utils3 108s libblockdev3 libevdev2 libftdi1-2 libinih1 libpipeline1 nano 108s python3-lazr.uri 108s 15 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 108s Need to get 611 kB of archives. 108s After this operation, 52.2 kB of additional disk space will be used. 108s Get:1 http://ftpmaster.internal/ubuntu plucky/main s390x libevdev2 s390x 1.13.3+dfsg-1 [35.9 kB] 109s Get:2 http://ftpmaster.internal/ubuntu plucky/main s390x libpipeline1 s390x 1.5.8-1 [32.5 kB] 109s Get:3 http://ftpmaster.internal/ubuntu plucky/main s390x nano s390x 8.2-1 [298 kB] 109s Get:4 http://ftpmaster.internal/ubuntu plucky/main s390x libblockdev-utils3 s390x 3.2.0-2 [19.3 kB] 109s Get:5 http://ftpmaster.internal/ubuntu plucky/main s390x libblockdev-crypto3 s390x 3.2.0-2 [23.7 kB] 109s Get:6 http://ftpmaster.internal/ubuntu plucky/main s390x libblockdev-fs3 s390x 3.2.0-2 [36.1 kB] 109s Get:7 http://ftpmaster.internal/ubuntu plucky/main s390x libblockdev-loop3 s390x 3.2.0-2 [7092 B] 109s Get:8 http://ftpmaster.internal/ubuntu plucky/main s390x libblockdev-mdraid3 s390x 3.2.0-2 [12.8 kB] 109s Get:9 http://ftpmaster.internal/ubuntu plucky/main s390x libblockdev-nvme3 s390x 3.2.0-2 [18.1 kB] 109s Get:10 http://ftpmaster.internal/ubuntu plucky/main s390x libblockdev-part3 s390x 3.2.0-2 [15.3 kB] 109s Get:11 http://ftpmaster.internal/ubuntu plucky/main s390x libblockdev-swap3 s390x 3.2.0-2 [7704 B] 109s Get:12 http://ftpmaster.internal/ubuntu plucky/main s390x libblockdev3 s390x 3.2.0-2 [53.8 kB] 109s Get:13 http://ftpmaster.internal/ubuntu plucky/main s390x libftdi1-2 s390x 1.5-7 [29.2 kB] 109s Get:14 http://ftpmaster.internal/ubuntu plucky/main s390x libinih1 s390x 58-1ubuntu1 [7602 B] 109s Get:15 http://ftpmaster.internal/ubuntu plucky/main s390x python3-lazr.uri all 1.0.6-4 [13.6 kB] 109s Fetched 611 kB in 1s (1145 kB/s) 109s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 55483 files and directories currently installed.) 109s Preparing to unpack .../00-libevdev2_1.13.3+dfsg-1_s390x.deb ... 109s Unpacking libevdev2:s390x (1.13.3+dfsg-1) over (1.13.2+dfsg-1) ... 109s Preparing to unpack .../01-libpipeline1_1.5.8-1_s390x.deb ... 109s Unpacking libpipeline1:s390x (1.5.8-1) over (1.5.7-2) ... 109s Preparing to unpack .../02-nano_8.2-1_s390x.deb ... 109s Unpacking nano (8.2-1) over (8.1-1) ... 109s Preparing to unpack .../03-libblockdev-utils3_3.2.0-2_s390x.deb ... 109s Unpacking libblockdev-utils3:s390x (3.2.0-2) over (3.1.1-2) ... 109s Preparing to unpack .../04-libblockdev-crypto3_3.2.0-2_s390x.deb ... 109s Unpacking libblockdev-crypto3:s390x (3.2.0-2) over (3.1.1-2) ... 109s Preparing to unpack .../05-libblockdev-fs3_3.2.0-2_s390x.deb ... 109s Unpacking libblockdev-fs3:s390x (3.2.0-2) over (3.1.1-2) ... 109s Preparing to unpack .../06-libblockdev-loop3_3.2.0-2_s390x.deb ... 109s Unpacking libblockdev-loop3:s390x (3.2.0-2) over (3.1.1-2) ... 109s Preparing to unpack .../07-libblockdev-mdraid3_3.2.0-2_s390x.deb ... 109s Unpacking libblockdev-mdraid3:s390x (3.2.0-2) over (3.1.1-2) ... 109s Preparing to unpack .../08-libblockdev-nvme3_3.2.0-2_s390x.deb ... 109s Unpacking libblockdev-nvme3:s390x (3.2.0-2) over (3.1.1-2) ... 109s Preparing to unpack .../09-libblockdev-part3_3.2.0-2_s390x.deb ... 109s Unpacking libblockdev-part3:s390x (3.2.0-2) over (3.1.1-2) ... 109s Preparing to unpack .../10-libblockdev-swap3_3.2.0-2_s390x.deb ... 109s Unpacking libblockdev-swap3:s390x (3.2.0-2) over (3.1.1-2) ... 109s Preparing to unpack .../11-libblockdev3_3.2.0-2_s390x.deb ... 109s Unpacking libblockdev3:s390x (3.2.0-2) over (3.1.1-2) ... 109s Preparing to unpack .../12-libftdi1-2_1.5-7_s390x.deb ... 109s Unpacking libftdi1-2:s390x (1.5-7) over (1.5-6build5) ... 109s Preparing to unpack .../13-libinih1_58-1ubuntu1_s390x.deb ... 109s Unpacking libinih1:s390x (58-1ubuntu1) over (55-1ubuntu2) ... 109s Preparing to unpack .../14-python3-lazr.uri_1.0.6-4_all.deb ... 109s Unpacking python3-lazr.uri (1.0.6-4) over (1.0.6-3) ... 109s Setting up libpipeline1:s390x (1.5.8-1) ... 109s Setting up libinih1:s390x (58-1ubuntu1) ... 109s Setting up python3-lazr.uri (1.0.6-4) ... 109s Setting up libftdi1-2:s390x (1.5-7) ... 109s Setting up libblockdev-utils3:s390x (3.2.0-2) ... 109s Setting up libblockdev-nvme3:s390x (3.2.0-2) ... 109s Setting up nano (8.2-1) ... 109s Setting up libblockdev-fs3:s390x (3.2.0-2) ... 109s Setting up libevdev2:s390x (1.13.3+dfsg-1) ... 109s Setting up libblockdev-mdraid3:s390x (3.2.0-2) ... 109s Setting up libblockdev-crypto3:s390x (3.2.0-2) ... 109s Setting up libblockdev-swap3:s390x (3.2.0-2) ... 109s Setting up libblockdev-loop3:s390x (3.2.0-2) ... 109s Setting up libblockdev3:s390x (3.2.0-2) ... 109s Installing new version of config file /etc/libblockdev/3/conf.d/00-default.cfg ... 109s Setting up libblockdev-part3:s390x (3.2.0-2) ... 109s Processing triggers for libc-bin (2.40-1ubuntu3) ... 109s Processing triggers for man-db (2.12.1-3) ... 110s Processing triggers for install-info (7.1.1-1) ... 110s Reading package lists... 110s Building dependency tree... 110s Reading state information... 110s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 111s Hit:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease 111s Hit:2 http://ftpmaster.internal/ubuntu plucky InRelease 111s Hit:3 http://ftpmaster.internal/ubuntu plucky-updates InRelease 111s Hit:4 http://ftpmaster.internal/ubuntu plucky-security InRelease 112s Reading package lists... 112s Reading package lists... 112s Building dependency tree... 112s Reading state information... 112s Calculating upgrade... 112s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 112s Reading package lists... 112s Building dependency tree... 112s Reading state information... 113s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 115s autopkgtest [22:34:15]: testbed running kernel: Linux 6.11.0-8-generic #8-Ubuntu SMP Mon Sep 16 12:49:35 UTC 2024 115s autopkgtest [22:34:15]: @@@@@@@@@@@@@@@@@@@@ apt-source htsjdk 120s Get:1 http://ftpmaster.internal/ubuntu plucky/universe htsjdk 4.1.0+dfsg-2 (dsc) [2649 B] 120s Get:2 http://ftpmaster.internal/ubuntu plucky/universe htsjdk 4.1.0+dfsg-2 (tar) [46.9 MB] 120s Get:3 http://ftpmaster.internal/ubuntu plucky/universe htsjdk 4.1.0+dfsg-2 (diff) [39.3 kB] 120s gpgv: Signature made Wed May 15 21:27:25 2024 UTC 120s gpgv: using RSA key 33CB284313E90BD27DCB4523600316A6DC277476 120s gpgv: Can't check signature: No public key 120s dpkg-source: warning: cannot verify inline signature for ./htsjdk_4.1.0+dfsg-2.dsc: no acceptable signature found 121s autopkgtest [22:34:21]: testing package htsjdk version 4.1.0+dfsg-2 122s beagle-run-sample-analysis SKIP Test lists explicitly supported architectures, but the current architecture s390x isn't listed. 122s chromhmm-run-sample-analysis SKIP Test lists explicitly supported architectures, but the current architecture s390x isn't listed. 122s drop-seq-run-unit-test SKIP Test lists explicitly supported architectures, but the current architecture s390x isn't listed. 122s fastqc-run-unit-test SKIP Test lists explicitly supported architectures, but the current architecture s390x isn't listed. 122s jalview-run-unit-test SKIP Test lists explicitly supported architectures, but the current architecture s390x isn't listed. 122s command1 SKIP Test lists explicitly supported architectures, but the current architecture s390x isn't listed. 123s picard-tools-run-unit-test SKIP Test lists explicitly supported architectures, but the current architecture s390x isn't listed. 123s pilon-run-unit-test SKIP Test lists explicitly supported architectures, but the current architecture s390x isn't listed. 123s autopkgtest [22:34:23]: build not needed 129s beagle-run-sample-analysis SKIP Test lists explicitly supported architectures, but the current architecture s390x isn't listed. 129s chromhmm-run-sample-analysis SKIP Test lists explicitly supported architectures, but the current architecture s390x isn't listed. 129s drop-seq-run-unit-test SKIP Test lists explicitly supported architectures, but the current architecture s390x isn't listed. 129s fastqc-run-unit-test SKIP Test lists explicitly supported architectures, but the current architecture s390x isn't listed. 130s jalview-run-unit-test SKIP Test lists explicitly supported architectures, but the current architecture s390x isn't listed. 130s command1 SKIP Test lists explicitly supported architectures, but the current architecture s390x isn't listed. 130s picard-tools-run-unit-test SKIP Test lists explicitly supported architectures, but the current architecture s390x isn't listed. 130s autopkgtest [22:34:30]: @@@@@@@@@@@@@@@@@@@@ summary 130s beagle-run-sample-analysis SKIP Test lists explicitly supported architectures, but the current architecture s390x isn't listed. 130s chromhmm-run-sample-analysis SKIP Test lists explicitly supported architectures, but the current architecture s390x isn't listed. 130s drop-seq-run-unit-test SKIP Test lists explicitly supported architectures, but the current architecture s390x isn't listed. 130s fastqc-run-unit-test SKIP Test lists explicitly supported architectures, but the current architecture s390x isn't listed. 130s jalview-run-unit-test SKIP Test lists explicitly supported architectures, but the current architecture s390x isn't listed. 130s command1 SKIP Test lists explicitly supported architectures, but the current architecture s390x isn't listed. 130s picard-tools-run-unit-test SKIP Test lists explicitly supported architectures, but the current architecture s390x isn't listed. 130s pilon-run-unit-test SKIP Test lists explicitly supported architectures, but the current architecture s390x isn't listed. 130s beagle-run-sample-analysis SKIP Test lists explicitly supported architectures, but the current architecture s390x isn't listed. 130s chromhmm-run-sample-analysis SKIP Test lists explicitly supported architectures, but the current architecture s390x isn't listed. 130s drop-seq-run-unit-test SKIP Test lists explicitly supported architectures, but the current architecture s390x isn't listed. 130s fastqc-run-unit-test SKIP Test lists explicitly supported architectures, but the current architecture s390x isn't listed. 130s jalview-run-unit-test SKIP Test lists explicitly supported architectures, but the current architecture s390x isn't listed. 130s command1 SKIP Test lists explicitly supported architectures, but the current architecture s390x isn't listed. 130s picard-tools-run-unit-test SKIP Test lists explicitly supported architectures, but the current architecture s390x isn't listed. 130s pilon-run-unit-test SKIP Test lists explicitly supported architectures, but the current architecture s390x isn't listed. 130s pilon-run-unit-test SKIP Test lists explicitly supported architectures, but the current architecture s390x isn't listed. 143s nova [W] Using flock in prodstack6-s390x 143s flock: timeout while waiting to get lock 143s Creating nova instance adt-plucky-s390x-htsjdk-20241101-223219-juju-7f2275-prod-proposed-migration-environment-2-3c158881-6798-498a-9d05-b81ff1e6b81c from image adt/ubuntu-plucky-s390x-server-20241101.img (UUID efc880a6-ff20-4207-a161-b1113fd9bea7)...