0s autopkgtest [15:17:22]: starting date and time: 2024-10-31 15:17:22+0000
  0s autopkgtest [15:17:22]: git checkout: 6f3be7a8 Fix armhf LXD image generation for plucky
  0s autopkgtest [15:17:22]: host juju-7f2275-prod-proposed-migration-environment-2; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.vhqc0mgn/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:sra-sdk --apt-upgrade htsjdk --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=sra-sdk/3.0.9+dfsg-7ubuntu1 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest-s390x --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-2@bos03-s390x-4.secgroup --name adt-plucky-s390x-htsjdk-20241031-151721-juju-7f2275-prod-proposed-migration-environment-2-c2e0f095-dae6-4573-a384-6fd89a867ca7 --image adt/ubuntu-plucky-s390x-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-2 --net-id=net_prod-proposed-migration-s390x -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,keyserver.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/
 98s autopkgtest [15:19:00]: testbed dpkg architecture: s390x
 98s autopkgtest [15:19:00]: testbed apt version: 2.9.8
 98s autopkgtest [15:19:00]: @@@@@@@@@@@@@@@@@@@@ test bed setup
 99s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease [73.9 kB]
 99s Get:2 http://ftpmaster.internal/ubuntu plucky-proposed/restricted Sources [7016 B]
 99s Get:3 http://ftpmaster.internal/ubuntu plucky-proposed/universe Sources [230 kB]
 99s Get:4 http://ftpmaster.internal/ubuntu plucky-proposed/main Sources [46.4 kB]
 99s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse Sources [2840 B]
 99s Get:6 http://ftpmaster.internal/ubuntu plucky-proposed/main s390x Packages [70.8 kB]
 99s Get:7 http://ftpmaster.internal/ubuntu plucky-proposed/universe s390x Packages [268 kB]
100s Fetched 699 kB in 1s (628 kB/s)
100s Reading package lists...
102s Reading package lists...
102s Building dependency tree...
102s Reading state information...
102s Calculating upgrade...
102s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
102s Reading package lists...
102s Building dependency tree...
102s Reading state information...
103s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
103s Hit:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease
103s Hit:2 http://ftpmaster.internal/ubuntu plucky InRelease
103s Hit:3 http://ftpmaster.internal/ubuntu plucky-updates InRelease
103s Hit:4 http://ftpmaster.internal/ubuntu plucky-security InRelease
104s Reading package lists...
104s Reading package lists...
104s Building dependency tree...
104s Reading state information...
104s Calculating upgrade...
104s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
104s Reading package lists...
104s Building dependency tree...
104s Reading state information...
104s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
107s autopkgtest [15:19:09]: testbed running kernel: Linux 6.11.0-8-generic #8-Ubuntu SMP Mon Sep 16 12:49:35 UTC 2024
107s autopkgtest [15:19:09]: @@@@@@@@@@@@@@@@@@@@ apt-source htsjdk
114s Get:1 http://ftpmaster.internal/ubuntu plucky/universe htsjdk 4.1.0+dfsg-2 (dsc) [2649 B]
114s Get:2 http://ftpmaster.internal/ubuntu plucky/universe htsjdk 4.1.0+dfsg-2 (tar) [46.9 MB]
114s Get:3 http://ftpmaster.internal/ubuntu plucky/universe htsjdk 4.1.0+dfsg-2 (diff) [39.3 kB]
114s gpgv: Signature made Wed May 15 21:27:25 2024 UTC
114s gpgv:                using RSA key 33CB284313E90BD27DCB4523600316A6DC277476
114s gpgv: Can't check signature: No public key
114s dpkg-source: warning: cannot verify inline signature for ./htsjdk_4.1.0+dfsg-2.dsc: no acceptable signature found
116s autopkgtest [15:19:18]: testing package htsjdk version 4.1.0+dfsg-2
116s beagle-run-sample-analysis SKIP Test lists explicitly supported architectures, but the current architecture s390x isn't listed.
116s chromhmm-run-sample-analysis SKIP Test lists explicitly supported architectures, but the current architecture s390x isn't listed.
116s drop-seq-run-unit-test SKIP Test lists explicitly supported architectures, but the current architecture s390x isn't listed.
116s fastqc-run-unit-test SKIP Test lists explicitly supported architectures, but the current architecture s390x isn't listed.
116s jalview-run-unit-test SKIP Test lists explicitly supported architectures, but the current architecture s390x isn't listed.
117s command1             SKIP Test lists explicitly supported architectures, but the current architecture s390x isn't listed.
117s picard-tools-run-unit-test SKIP Test lists explicitly supported architectures, but the current architecture s390x isn't listed.
117s pilon-run-unit-test  SKIP Test lists explicitly supported architectures, but the current architecture s390x isn't listed.
117s autopkgtest [15:19:19]: build not needed
124s beagle-run-sample-analysis SKIP Test lists explicitly supported architectures, but the current architecture s390x isn't listed.
124s chromhmm-run-sample-analysis SKIP Test lists explicitly supported architectures, but the current architecture s390x isn't listed.
124s drop-seq-run-unit-test SKIP Test lists explicitly supported architectures, but the current architecture s390x isn't listed.
124s fastqc-run-unit-test SKIP Test lists explicitly supported architectures, but the current architecture s390x isn't listed.
124s jalview-run-unit-test SKIP Test lists explicitly supported architectures, but the current architecture s390x isn't listed.
124s command1             SKIP Test lists explicitly supported architectures, but the current architecture s390x isn't listed.
124s picard-tools-run-unit-test SKIP Test lists explicitly supported architectures, but the current architecture s390x isn't listed.
124s pilon-run-unit-test  SKIP Test lists explicitly supported architectures, but the current architecture s390x isn't listed.
124s autopkgtest [15:19:26]: @@@@@@@@@@@@@@@@@@@@ summary
124s beagle-run-sample-analysis SKIP Test lists explicitly supported architectures, but the current architecture s390x isn't listed.
124s chromhmm-run-sample-analysis SKIP Test lists explicitly supported architectures, but the current architecture s390x isn't listed.
124s drop-seq-run-unit-test SKIP Test lists explicitly supported architectures, but the current architecture s390x isn't listed.
124s fastqc-run-unit-test SKIP Test lists explicitly supported architectures, but the current architecture s390x isn't listed.
124s jalview-run-unit-test SKIP Test lists explicitly supported architectures, but the current architecture s390x isn't listed.
124s command1             SKIP Test lists explicitly supported architectures, but the current architecture s390x isn't listed.
124s picard-tools-run-unit-test SKIP Test lists explicitly supported architectures, but the current architecture s390x isn't listed.
124s pilon-run-unit-test  SKIP Test lists explicitly supported architectures, but the current architecture s390x isn't listed.
124s beagle-run-sample-analysis SKIP Test lists explicitly supported architectures, but the current architecture s390x isn't listed.
124s chromhmm-run-sample-analysis SKIP Test lists explicitly supported architectures, but the current architecture s390x isn't listed.
124s drop-seq-run-unit-test SKIP Test lists explicitly supported architectures, but the current architecture s390x isn't listed.
124s fastqc-run-unit-test SKIP Test lists explicitly supported architectures, but the current architecture s390x isn't listed.
124s jalview-run-unit-test SKIP Test lists explicitly supported architectures, but the current architecture s390x isn't listed.
124s command1             SKIP Test lists explicitly supported architectures, but the current architecture s390x isn't listed.
124s picard-tools-run-unit-test SKIP Test lists explicitly supported architectures, but the current architecture s390x isn't listed.
124s pilon-run-unit-test  SKIP Test lists explicitly supported architectures, but the current architecture s390x isn't listed.
129s nova [W] Using flock in prodstack6-s390x
129s flock: timeout while waiting to get lock
129s Creating nova instance adt-plucky-s390x-htsjdk-20241031-151721-juju-7f2275-prod-proposed-migration-environment-2-c2e0f095-dae6-4573-a384-6fd89a867ca7 from image adt/ubuntu-plucky-s390x-server-20241031.img (UUID cbeb39b3-4e0d-46f6-95bd-a3c90efe21b3)...