0s autopkgtest [11:27:11]: starting date and time: 2024-11-13 11:27:11+0000 0s autopkgtest [11:27:11]: git checkout: 0acbae0a WIP show VirtSubproc stderr in real-time 0s autopkgtest [11:27:11]: host juju-7f2275-prod-proposed-migration-environment-2; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.xey_d403/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:python3-defaults,src:python3-stdlib-extensions --apt-upgrade hdmf --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 '--env=ADT_TEST_TRIGGERS=python3-defaults/3.12.7-1 python3-stdlib-extensions/3.12.7-1' -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest-s390x --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-2@bos03-s390x-7.secgroup --name adt-plucky-s390x-hdmf-20241113-112711-juju-7f2275-prod-proposed-migration-environment-2-8f99c7af-933a-42c7-8505-a66d08a082e1 --image adt/ubuntu-plucky-s390x-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-2 --net-id=net_prod-proposed-migration-s390x -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,keyserver.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/ 115s autopkgtest [11:29:06]: testbed dpkg architecture: s390x 116s autopkgtest [11:29:07]: testbed apt version: 2.9.8 116s autopkgtest [11:29:07]: @@@@@@@@@@@@@@@@@@@@ test bed setup 117s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease [73.9 kB] 117s Get:2 http://ftpmaster.internal/ubuntu plucky-proposed/main Sources [76.4 kB] 117s Get:3 http://ftpmaster.internal/ubuntu plucky-proposed/restricted Sources [7016 B] 117s Get:4 http://ftpmaster.internal/ubuntu plucky-proposed/universe Sources [849 kB] 117s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse Sources [15.3 kB] 117s Get:6 http://ftpmaster.internal/ubuntu plucky-proposed/main s390x Packages [85.8 kB] 117s Get:7 http://ftpmaster.internal/ubuntu plucky-proposed/universe s390x Packages [565 kB] 117s Get:8 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse s390x Packages [16.6 kB] 117s Fetched 1689 kB in 1s (2249 kB/s) 117s Reading package lists... 120s Reading package lists... 120s Building dependency tree... 120s Reading state information... 120s Calculating upgrade... 120s The following NEW packages will be installed: 120s python3.13-gdbm 120s The following packages will be upgraded: 120s libgpgme11t64 libpython3-stdlib python3 python3-gdbm python3-minimal 120s 5 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. 120s Need to get 252 kB of archives. 120s After this operation, 98.3 kB of additional disk space will be used. 120s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed/main s390x python3-minimal s390x 3.12.7-1 [27.4 kB] 120s Get:2 http://ftpmaster.internal/ubuntu plucky-proposed/main s390x python3 s390x 3.12.7-1 [24.0 kB] 120s Get:3 http://ftpmaster.internal/ubuntu plucky-proposed/main s390x libpython3-stdlib s390x 3.12.7-1 [10.0 kB] 120s Get:4 http://ftpmaster.internal/ubuntu plucky/main s390x python3.13-gdbm s390x 3.13.0-2 [31.0 kB] 121s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/main s390x python3-gdbm s390x 3.12.7-1 [8642 B] 121s Get:6 http://ftpmaster.internal/ubuntu plucky/main s390x libgpgme11t64 s390x 1.23.2-5ubuntu4 [151 kB] 121s Fetched 252 kB in 0s (585 kB/s) 121s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 55510 files and directories currently installed.) 121s Preparing to unpack .../python3-minimal_3.12.7-1_s390x.deb ... 121s Unpacking python3-minimal (3.12.7-1) over (3.12.6-0ubuntu1) ... 121s Setting up python3-minimal (3.12.7-1) ... 121s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 55510 files and directories currently installed.) 121s Preparing to unpack .../python3_3.12.7-1_s390x.deb ... 121s Unpacking python3 (3.12.7-1) over (3.12.6-0ubuntu1) ... 121s Preparing to unpack .../libpython3-stdlib_3.12.7-1_s390x.deb ... 121s Unpacking libpython3-stdlib:s390x (3.12.7-1) over (3.12.6-0ubuntu1) ... 121s Selecting previously unselected package python3.13-gdbm. 121s Preparing to unpack .../python3.13-gdbm_3.13.0-2_s390x.deb ... 121s Unpacking python3.13-gdbm (3.13.0-2) ... 121s Preparing to unpack .../python3-gdbm_3.12.7-1_s390x.deb ... 121s Unpacking python3-gdbm:s390x (3.12.7-1) over (3.12.6-1ubuntu1) ... 121s Preparing to unpack .../libgpgme11t64_1.23.2-5ubuntu4_s390x.deb ... 121s Unpacking libgpgme11t64:s390x (1.23.2-5ubuntu4) over (1.18.0-4.1ubuntu4) ... 121s Setting up libgpgme11t64:s390x (1.23.2-5ubuntu4) ... 121s Setting up python3.13-gdbm (3.13.0-2) ... 121s Setting up libpython3-stdlib:s390x (3.12.7-1) ... 121s Setting up python3 (3.12.7-1) ... 121s Setting up python3-gdbm:s390x (3.12.7-1) ... 121s Processing triggers for man-db (2.12.1-3) ... 122s Processing triggers for libc-bin (2.40-1ubuntu3) ... 122s Reading package lists... 122s Building dependency tree... 122s Reading state information... 123s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 123s Hit:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease 123s Hit:2 http://ftpmaster.internal/ubuntu plucky InRelease 123s Hit:3 http://ftpmaster.internal/ubuntu plucky-updates InRelease 123s Hit:4 http://ftpmaster.internal/ubuntu plucky-security InRelease 124s Reading package lists... 124s Reading package lists... 124s Building dependency tree... 124s Reading state information... 124s Calculating upgrade... 124s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 124s Reading package lists... 124s Building dependency tree... 124s Reading state information... 124s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 127s autopkgtest [11:29:18]: testbed running kernel: Linux 6.11.0-8-generic #8-Ubuntu SMP Mon Sep 16 12:49:35 UTC 2024 127s autopkgtest [11:29:18]: @@@@@@@@@@@@@@@@@@@@ apt-source hdmf 130s Get:1 http://ftpmaster.internal/ubuntu plucky/universe hdmf 3.14.5-1 (dsc) [2399 B] 130s Get:2 http://ftpmaster.internal/ubuntu plucky/universe hdmf 3.14.5-1 (tar) [15.8 MB] 130s Get:3 http://ftpmaster.internal/ubuntu plucky/universe hdmf 3.14.5-1 (diff) [6460 B] 130s gpgv: Signature made Sat Nov 2 15:04:50 2024 UTC 130s gpgv: using RSA key 8F91B227C7D6F2B1948C8236793CF67E8F0D11DA 130s gpgv: issuer "emollier@debian.org" 130s gpgv: Can't check signature: No public key 130s dpkg-source: warning: cannot verify inline signature for ./hdmf_3.14.5-1.dsc: no acceptable signature found 130s autopkgtest [11:29:21]: testing package hdmf version 3.14.5-1 131s autopkgtest [11:29:22]: build not needed 132s autopkgtest [11:29:23]: test run-unit-test: preparing testbed 133s Reading package lists... 133s Building dependency tree... 133s Reading state information... 134s Starting pkgProblemResolver with broken count: 0 134s Starting 2 pkgProblemResolver with broken count: 0 134s Done 134s The following additional packages will be installed: 134s libaec0 libblas3 libgfortran5 libhdf5-103-1t64 libhdf5-hl-100t64 liblapack3 134s liblbfgsb0 liblzf1 libpython3.13-minimal libpython3.13-stdlib libsz2 134s python3-all python3-dateutil python3-decorator python3-h5py 134s python3-h5py-serial python3-hdmf python3-numpy python3-pandas 134s python3-pandas-lib python3-ruamel.yaml python3-ruamel.yaml.clib 134s python3-scipy python3-six python3-tz python3.13 python3.13-minimal 134s Suggested packages: 134s python-h5py-doc gcc gfortran python-numpy-doc python3-dev python3-pytest 134s python-pandas-doc python3-statsmodels python-scipy-doc python3.13-venv 134s python3.13-doc binfmt-support 134s Recommended packages: 134s python3-matplotlib python3-bottleneck python3-numexpr python3-odf 134s python3-openpyxl python3-bs4 python3-html5lib python3-lxml python3-tables 134s g++ | c++-compiler python3-pil 134s The following NEW packages will be installed: 134s autopkgtest-satdep libaec0 libblas3 libgfortran5 libhdf5-103-1t64 134s libhdf5-hl-100t64 liblapack3 liblbfgsb0 liblzf1 libpython3.13-minimal 134s libpython3.13-stdlib libsz2 python3-all python3-dateutil python3-decorator 134s python3-h5py python3-h5py-serial python3-hdmf python3-numpy python3-pandas 134s python3-pandas-lib python3-ruamel.yaml python3-ruamel.yaml.clib 134s python3-scipy python3-six python3-tz python3.13 python3.13-minimal 134s 0 upgraded, 28 newly installed, 0 to remove and 0 not upgraded. 134s Need to get 42.7 MB/42.7 MB of archives. 134s After this operation, 181 MB of additional disk space will be used. 134s Get:1 /tmp/autopkgtest.IFnIxF/1-autopkgtest-satdep.deb autopkgtest-satdep s390x 0 [716 B] 134s Get:2 http://ftpmaster.internal/ubuntu plucky/main s390x libpython3.13-minimal s390x 3.13.0-2 [877 kB] 134s Get:3 http://ftpmaster.internal/ubuntu plucky/main s390x python3.13-minimal s390x 3.13.0-2 [2172 kB] 134s Get:4 http://ftpmaster.internal/ubuntu plucky/universe s390x libaec0 s390x 1.1.3-1 [25.7 kB] 134s Get:5 http://ftpmaster.internal/ubuntu plucky/main s390x libblas3 s390x 3.12.0-3build2 [238 kB] 134s Get:6 http://ftpmaster.internal/ubuntu plucky/main s390x libgfortran5 s390x 14.2.0-8ubuntu1 [587 kB] 135s Get:7 http://ftpmaster.internal/ubuntu plucky/universe s390x libsz2 s390x 1.1.3-1 [5442 B] 135s Get:8 http://ftpmaster.internal/ubuntu plucky/universe s390x libhdf5-103-1t64 s390x 1.10.10+repack-4ubuntu3 [1426 kB] 135s Get:9 http://ftpmaster.internal/ubuntu plucky/universe s390x libhdf5-hl-100t64 s390x 1.10.10+repack-4ubuntu3 [58.0 kB] 135s Get:10 http://ftpmaster.internal/ubuntu plucky/main s390x liblapack3 s390x 3.12.0-3build2 [2953 kB] 135s Get:11 http://ftpmaster.internal/ubuntu plucky/universe s390x liblbfgsb0 s390x 3.0+dfsg.4-1build1 [32.4 kB] 135s Get:12 http://ftpmaster.internal/ubuntu plucky/universe s390x liblzf1 s390x 3.6-4 [7020 B] 135s Get:13 http://ftpmaster.internal/ubuntu plucky/main s390x libpython3.13-stdlib s390x 3.13.0-2 [2086 kB] 135s Get:14 http://ftpmaster.internal/ubuntu plucky/main s390x python3.13 s390x 3.13.0-2 [719 kB] 135s Get:15 http://ftpmaster.internal/ubuntu plucky-proposed/main s390x python3-all s390x 3.12.7-1 [890 B] 135s Get:16 http://ftpmaster.internal/ubuntu plucky/main s390x python3-six all 1.16.0-7 [13.1 kB] 135s Get:17 http://ftpmaster.internal/ubuntu plucky/main s390x python3-dateutil all 2.9.0-2 [80.3 kB] 135s Get:18 http://ftpmaster.internal/ubuntu plucky/main s390x python3-decorator all 5.1.1-5 [10.1 kB] 135s Get:19 http://ftpmaster.internal/ubuntu plucky/main s390x python3-numpy s390x 1:1.26.4+ds-11build1 [4113 kB] 135s Get:20 http://ftpmaster.internal/ubuntu plucky/universe s390x python3-h5py-serial s390x 3.11.0-5ubuntu1 [1151 kB] 135s Get:21 http://ftpmaster.internal/ubuntu plucky/universe s390x python3-h5py all 3.11.0-5ubuntu1 [7974 B] 135s Get:22 http://ftpmaster.internal/ubuntu plucky/main s390x python3-tz all 2024.1-2 [31.4 kB] 135s Get:23 http://ftpmaster.internal/ubuntu plucky/universe s390x python3-pandas-lib s390x 2.2.3+dfsg-5 [4938 kB] 135s Get:24 http://ftpmaster.internal/ubuntu plucky/universe s390x python3-pandas all 2.2.3+dfsg-5 [3112 kB] 135s Get:25 http://ftpmaster.internal/ubuntu plucky/universe s390x python3-scipy s390x 1.13.1-5 [17.5 MB] 135s Get:26 http://ftpmaster.internal/ubuntu plucky/universe s390x python3-ruamel.yaml.clib s390x 0.2.8+ds-2 [143 kB] 135s Get:27 http://ftpmaster.internal/ubuntu plucky/universe s390x python3-ruamel.yaml all 0.18.6+ds-3 [126 kB] 135s Get:28 http://ftpmaster.internal/ubuntu plucky/universe s390x python3-hdmf all 3.14.5-1 [235 kB] 136s Fetched 42.7 MB in 2s (25.1 MB/s) 136s Selecting previously unselected package libpython3.13-minimal:s390x. 136s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 55517 files and directories currently installed.) 136s Preparing to unpack .../00-libpython3.13-minimal_3.13.0-2_s390x.deb ... 136s Unpacking libpython3.13-minimal:s390x (3.13.0-2) ... 136s Selecting previously unselected package python3.13-minimal. 136s Preparing to unpack .../01-python3.13-minimal_3.13.0-2_s390x.deb ... 136s Unpacking python3.13-minimal (3.13.0-2) ... 136s Selecting previously unselected package libaec0:s390x. 136s Preparing to unpack .../02-libaec0_1.1.3-1_s390x.deb ... 136s Unpacking libaec0:s390x (1.1.3-1) ... 136s Selecting previously unselected package libblas3:s390x. 136s Preparing to unpack .../03-libblas3_3.12.0-3build2_s390x.deb ... 136s Unpacking libblas3:s390x (3.12.0-3build2) ... 136s Selecting previously unselected package libgfortran5:s390x. 136s Preparing to unpack .../04-libgfortran5_14.2.0-8ubuntu1_s390x.deb ... 136s Unpacking libgfortran5:s390x (14.2.0-8ubuntu1) ... 136s Selecting previously unselected package libsz2:s390x. 136s Preparing to unpack .../05-libsz2_1.1.3-1_s390x.deb ... 136s Unpacking libsz2:s390x (1.1.3-1) ... 136s Selecting previously unselected package libhdf5-103-1t64:s390x. 136s Preparing to unpack .../06-libhdf5-103-1t64_1.10.10+repack-4ubuntu3_s390x.deb ... 136s Unpacking libhdf5-103-1t64:s390x (1.10.10+repack-4ubuntu3) ... 136s Selecting previously unselected package libhdf5-hl-100t64:s390x. 136s Preparing to unpack .../07-libhdf5-hl-100t64_1.10.10+repack-4ubuntu3_s390x.deb ... 136s Unpacking libhdf5-hl-100t64:s390x (1.10.10+repack-4ubuntu3) ... 136s Selecting previously unselected package liblapack3:s390x. 136s Preparing to unpack .../08-liblapack3_3.12.0-3build2_s390x.deb ... 136s Unpacking liblapack3:s390x (3.12.0-3build2) ... 136s Selecting previously unselected package liblbfgsb0:s390x. 136s Preparing to unpack .../09-liblbfgsb0_3.0+dfsg.4-1build1_s390x.deb ... 136s Unpacking liblbfgsb0:s390x (3.0+dfsg.4-1build1) ... 136s Selecting previously unselected package liblzf1:s390x. 136s Preparing to unpack .../10-liblzf1_3.6-4_s390x.deb ... 136s Unpacking liblzf1:s390x (3.6-4) ... 136s Selecting previously unselected package libpython3.13-stdlib:s390x. 136s Preparing to unpack .../11-libpython3.13-stdlib_3.13.0-2_s390x.deb ... 136s Unpacking libpython3.13-stdlib:s390x (3.13.0-2) ... 136s Selecting previously unselected package python3.13. 136s Preparing to unpack .../12-python3.13_3.13.0-2_s390x.deb ... 136s Unpacking python3.13 (3.13.0-2) ... 136s Selecting previously unselected package python3-all. 136s Preparing to unpack .../13-python3-all_3.12.7-1_s390x.deb ... 136s Unpacking python3-all (3.12.7-1) ... 136s Selecting previously unselected package python3-six. 136s Preparing to unpack .../14-python3-six_1.16.0-7_all.deb ... 136s Unpacking python3-six (1.16.0-7) ... 136s Selecting previously unselected package python3-dateutil. 136s Preparing to unpack .../15-python3-dateutil_2.9.0-2_all.deb ... 136s Unpacking python3-dateutil (2.9.0-2) ... 136s Selecting previously unselected package python3-decorator. 136s Preparing to unpack .../16-python3-decorator_5.1.1-5_all.deb ... 136s Unpacking python3-decorator (5.1.1-5) ... 136s Selecting previously unselected package python3-numpy. 136s Preparing to unpack .../17-python3-numpy_1%3a1.26.4+ds-11build1_s390x.deb ... 136s Unpacking python3-numpy (1:1.26.4+ds-11build1) ... 136s Selecting previously unselected package python3-h5py-serial. 136s Preparing to unpack .../18-python3-h5py-serial_3.11.0-5ubuntu1_s390x.deb ... 136s Unpacking python3-h5py-serial (3.11.0-5ubuntu1) ... 136s Selecting previously unselected package python3-h5py. 136s Preparing to unpack .../19-python3-h5py_3.11.0-5ubuntu1_all.deb ... 136s Unpacking python3-h5py (3.11.0-5ubuntu1) ... 136s Selecting previously unselected package python3-tz. 136s Preparing to unpack .../20-python3-tz_2024.1-2_all.deb ... 136s Unpacking python3-tz (2024.1-2) ... 136s Selecting previously unselected package python3-pandas-lib:s390x. 136s Preparing to unpack .../21-python3-pandas-lib_2.2.3+dfsg-5_s390x.deb ... 136s Unpacking python3-pandas-lib:s390x (2.2.3+dfsg-5) ... 136s Selecting previously unselected package python3-pandas. 136s Preparing to unpack .../22-python3-pandas_2.2.3+dfsg-5_all.deb ... 136s Unpacking python3-pandas (2.2.3+dfsg-5) ... 137s Selecting previously unselected package python3-scipy. 137s Preparing to unpack .../23-python3-scipy_1.13.1-5_s390x.deb ... 137s Unpacking python3-scipy (1.13.1-5) ... 137s Selecting previously unselected package python3-ruamel.yaml.clib:s390x. 137s Preparing to unpack .../24-python3-ruamel.yaml.clib_0.2.8+ds-2_s390x.deb ... 137s Unpacking python3-ruamel.yaml.clib:s390x (0.2.8+ds-2) ... 137s Selecting previously unselected package python3-ruamel.yaml. 137s Preparing to unpack .../25-python3-ruamel.yaml_0.18.6+ds-3_all.deb ... 137s Unpacking python3-ruamel.yaml (0.18.6+ds-3) ... 137s Selecting previously unselected package python3-hdmf. 137s Preparing to unpack .../26-python3-hdmf_3.14.5-1_all.deb ... 137s Unpacking python3-hdmf (3.14.5-1) ... 137s Selecting previously unselected package autopkgtest-satdep. 137s Preparing to unpack .../27-1-autopkgtest-satdep.deb ... 137s Unpacking autopkgtest-satdep (0) ... 137s Setting up python3-ruamel.yaml.clib:s390x (0.2.8+ds-2) ... 137s Setting up libaec0:s390x (1.1.3-1) ... 137s Setting up python3-tz (2024.1-2) ... 137s Setting up python3-six (1.16.0-7) ... 137s Setting up libpython3.13-minimal:s390x (3.13.0-2) ... 137s Setting up python3-decorator (5.1.1-5) ... 138s Setting up libblas3:s390x (3.12.0-3build2) ... 138s update-alternatives: using /usr/lib/s390x-linux-gnu/blas/libblas.so.3 to provide /usr/lib/s390x-linux-gnu/libblas.so.3 (libblas.so.3-s390x-linux-gnu) in auto mode 138s Setting up liblzf1:s390x (3.6-4) ... 138s Setting up libgfortran5:s390x (14.2.0-8ubuntu1) ... 138s Setting up python3-ruamel.yaml (0.18.6+ds-3) ... 138s Setting up python3.13-minimal (3.13.0-2) ... 139s Setting up python3-dateutil (2.9.0-2) ... 139s Setting up libpython3.13-stdlib:s390x (3.13.0-2) ... 139s Setting up libsz2:s390x (1.1.3-1) ... 139s Setting up liblapack3:s390x (3.12.0-3build2) ... 139s update-alternatives: using /usr/lib/s390x-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/s390x-linux-gnu/liblapack.so.3 (liblapack.so.3-s390x-linux-gnu) in auto mode 139s Setting up python3.13 (3.13.0-2) ... 140s Setting up python3-all (3.12.7-1) ... 140s Setting up python3-numpy (1:1.26.4+ds-11build1) ... 144s Setting up libhdf5-103-1t64:s390x (1.10.10+repack-4ubuntu3) ... 144s Setting up liblbfgsb0:s390x (3.0+dfsg.4-1build1) ... 144s Setting up libhdf5-hl-100t64:s390x (1.10.10+repack-4ubuntu3) ... 144s Setting up python3-scipy (1.13.1-5) ... 151s Setting up python3-pandas-lib:s390x (2.2.3+dfsg-5) ... 151s Setting up python3-h5py-serial (3.11.0-5ubuntu1) ... 152s Setting up python3-pandas (2.2.3+dfsg-5) ... 164s Setting up python3-h5py (3.11.0-5ubuntu1) ... 164s Setting up python3-hdmf (3.14.5-1) ... 165s Setting up autopkgtest-satdep (0) ... 165s Processing triggers for systemd (256.5-2ubuntu4) ... 165s Processing triggers for man-db (2.12.1-3) ... 165s Processing triggers for libc-bin (2.40-1ubuntu3) ... 167s (Reading database ... 60731 files and directories currently installed.) 167s Removing autopkgtest-satdep (0) ... 168s autopkgtest [11:29:59]: test run-unit-test: [----------------------- 168s Testing with python3.13 in /tmp/autopkgtest.IFnIxF/autopkgtest_tmp: 169s tests.unit.back_compat_tests.test_1_1_0 (unittest.loader._FailedTest.tests.unit.back_compat_tests.test_1_1_0) ... ERROR 169s tests.unit.build_tests.mapper_tests.test_build (unittest.loader._FailedTest.tests.unit.build_tests.mapper_tests.test_build) ... ERROR 169s tests.unit.build_tests.mapper_tests.test_build_datetime (unittest.loader._FailedTest.tests.unit.build_tests.mapper_tests.test_build_datetime) ... ERROR 169s tests.unit.build_tests.mapper_tests.test_build_quantity (unittest.loader._FailedTest.tests.unit.build_tests.mapper_tests.test_build_quantity) ... ERROR 169s tests.unit.build_tests.test_builder (unittest.loader._FailedTest.tests.unit.build_tests.test_builder) ... ERROR 169s tests.unit.build_tests.test_classgenerator (unittest.loader._FailedTest.tests.unit.build_tests.test_classgenerator) ... ERROR 169s tests.unit.build_tests.test_convert_dtype (unittest.loader._FailedTest.tests.unit.build_tests.test_convert_dtype) ... ERROR 169s tests.unit.build_tests.test_io_manager (unittest.loader._FailedTest.tests.unit.build_tests.test_io_manager) ... ERROR 169s tests.unit.build_tests.test_io_map (unittest.loader._FailedTest.tests.unit.build_tests.test_io_map) ... ERROR 169s tests.unit.build_tests.test_io_map_data (unittest.loader._FailedTest.tests.unit.build_tests.test_io_map_data) ... ERROR 169s tests.unit.common.test_alignedtable (unittest.loader._FailedTest.tests.unit.common.test_alignedtable) ... ERROR 169s tests.unit.common.test_common (unittest.loader._FailedTest.tests.unit.common.test_common) ... ERROR 169s tests.unit.common.test_common_io (unittest.loader._FailedTest.tests.unit.common.test_common_io) ... ERROR 169s tests.unit.common.test_generate_table (unittest.loader._FailedTest.tests.unit.common.test_generate_table) ... ERROR 169s tests.unit.common.test_linkedtables (unittest.loader._FailedTest.tests.unit.common.test_linkedtables) ... ERROR 169s tests.unit.common.test_multi (unittest.loader._FailedTest.tests.unit.common.test_multi) ... ERROR 169s tests.unit.common.test_resources (unittest.loader._FailedTest.tests.unit.common.test_resources) ... ERROR 169s tests.unit.common.test_sparse (unittest.loader._FailedTest.tests.unit.common.test_sparse) ... ERROR 169s tests.unit.common.test_table (unittest.loader._FailedTest.tests.unit.common.test_table) ... ERROR 169s tests.unit.spec_tests.test_attribute_spec (unittest.loader._FailedTest.tests.unit.spec_tests.test_attribute_spec) ... ERROR 169s tests.unit.spec_tests.test_dataset_spec (unittest.loader._FailedTest.tests.unit.spec_tests.test_dataset_spec) ... ERROR 169s tests.unit.spec_tests.test_dtype_spec (unittest.loader._FailedTest.tests.unit.spec_tests.test_dtype_spec) ... ERROR 169s tests.unit.spec_tests.test_group_spec (unittest.loader._FailedTest.tests.unit.spec_tests.test_group_spec) ... ERROR 169s tests.unit.spec_tests.test_link_spec (unittest.loader._FailedTest.tests.unit.spec_tests.test_link_spec) ... ERROR 169s tests.unit.spec_tests.test_load_namespace (unittest.loader._FailedTest.tests.unit.spec_tests.test_load_namespace) ... ERROR 169s tests.unit.spec_tests.test_ref_spec (unittest.loader._FailedTest.tests.unit.spec_tests.test_ref_spec) ... ERROR 169s tests.unit.spec_tests.test_spec_catalog (unittest.loader._FailedTest.tests.unit.spec_tests.test_spec_catalog) ... ERROR 169s tests.unit.spec_tests.test_spec_write (unittest.loader._FailedTest.tests.unit.spec_tests.test_spec_write) ... ERROR 169s tests.unit.test_container (unittest.loader._FailedTest.tests.unit.test_container) ... ERROR 169s tests.unit.test_io_hdf5 (unittest.loader._FailedTest.tests.unit.test_io_hdf5) ... ERROR 169s tests.unit.test_io_hdf5_h5tools (unittest.loader._FailedTest.tests.unit.test_io_hdf5_h5tools) ... ERROR 169s tests.unit.test_io_hdf5_streaming (unittest.loader._FailedTest.tests.unit.test_io_hdf5_streaming) ... ERROR 169s tests.unit.test_multicontainerinterface (unittest.loader._FailedTest.tests.unit.test_multicontainerinterface) ... ERROR 169s tests.unit.test_query (unittest.loader._FailedTest.tests.unit.test_query) ... ERROR 169s tests.unit.test_table (unittest.loader._FailedTest.tests.unit.test_table) ... ERROR 169s tests.unit.test_term_set (unittest.loader._FailedTest.tests.unit.test_term_set) ... ERROR 169s tests.unit.utils_test.test_core_DataChunk (unittest.loader._FailedTest.tests.unit.utils_test.test_core_DataChunk) ... ERROR 169s tests.unit.utils_test.test_core_DataChunkIterator (unittest.loader._FailedTest.tests.unit.utils_test.test_core_DataChunkIterator) ... ERROR 169s tests.unit.utils_test.test_core_DataIO (unittest.loader._FailedTest.tests.unit.utils_test.test_core_DataIO) ... ERROR 169s tests.unit.utils_test.test_core_GenericDataChunkIterator (unittest.loader._FailedTest.tests.unit.utils_test.test_core_GenericDataChunkIterator) ... ERROR 169s tests.unit.utils_test.test_core_ShapeValidator (unittest.loader._FailedTest.tests.unit.utils_test.test_core_ShapeValidator) ... ERROR 169s tests.unit.utils_test.test_data_utils (unittest.loader._FailedTest.tests.unit.utils_test.test_data_utils) ... ERROR 169s tests.unit.utils_test.test_docval (unittest.loader._FailedTest.tests.unit.utils_test.test_docval) ... ERROR 169s tests.unit.utils_test.test_labelleddict (unittest.loader._FailedTest.tests.unit.utils_test.test_labelleddict) ... ERROR 169s tests.unit.utils_test.test_utils (unittest.loader._FailedTest.tests.unit.utils_test.test_utils) ... ERROR 169s tests.unit.validator_tests.test_errors (unittest.loader._FailedTest.tests.unit.validator_tests.test_errors) ... ERROR 169s tests.unit.validator_tests.test_validate (unittest.loader._FailedTest.tests.unit.validator_tests.test_validate) ... ERROR 169s 169s ====================================================================== 169s ERROR: tests.unit.back_compat_tests.test_1_1_0 (unittest.loader._FailedTest.tests.unit.back_compat_tests.test_1_1_0) 169s ---------------------------------------------------------------------- 169s ImportError: Failed to import test module: tests.unit.back_compat_tests.test_1_1_0 169s Traceback (most recent call last): 169s File "/usr/lib/python3/dist-packages/numpy/core/__init__.py", line 24, in 169s from . import multiarray 169s File "/usr/lib/python3/dist-packages/numpy/core/multiarray.py", line 10, in 169s from . import overrides 169s File "/usr/lib/python3/dist-packages/numpy/core/overrides.py", line 8, in 169s from numpy.core._multiarray_umath import ( 169s add_docstring, _get_implementing_args, _ArrayFunctionDispatcher) 169s ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 169s 169s During handling of the above exception, another exception occurred: 169s 169s Traceback (most recent call last): 169s File "/usr/lib/python3/dist-packages/numpy/__init__.py", line 130, in 169s from numpy.__config__ import show as show_config 169s File "/usr/lib/python3/dist-packages/numpy/__config__.py", line 4, in 169s from numpy.core._multiarray_umath import ( 169s ...<3 lines>... 169s ) 169s File "/usr/lib/python3/dist-packages/numpy/core/__init__.py", line 50, in 169s raise ImportError(msg) 169s ImportError: 169s 169s IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 169s 169s Importing the numpy C-extensions failed. This error can happen for 169s many reasons, often due to issues with your setup or how NumPy was 169s installed. 169s 169s We have compiled some common reasons and troubleshooting tips at: 169s 169s https://numpy.org/devdocs/user/troubleshooting-importerror.html 169s 169s Please note and check the following: 169s 169s * The Python version is: Python3.13 from "/usr/bin/python3.13" 169s * The NumPy version is: "1.26.4" 169s 169s and make sure that they are the versions you expect. 169s Please carefully study the documentation linked above for further help. 169s 169s Original error was: No module named 'numpy.core._multiarray_umath' 169s 169s 169s The above exception was the direct cause of the following exception: 169s 169s Traceback (most recent call last): 169s File "/usr/lib/python3.13/unittest/loader.py", line 396, in _find_test_path 169s module = self._get_module_from_name(name) 169s File "/usr/lib/python3.13/unittest/loader.py", line 339, in _get_module_from_name 169s __import__(name) 169s ~~~~~~~~~~^^^^^^ 169s File "/tmp/autopkgtest.IFnIxF/autopkgtest_tmp/tests/unit/back_compat_tests/test_1_1_0.py", line 4, in 169s from hdmf.backends.hdf5.h5tools import HDF5IO 169s File "/usr/lib/python3/dist-packages/hdmf/__init__.py", line 1, in 169s from . import query 169s File "/usr/lib/python3/dist-packages/hdmf/query.py", line 3, in 169s import numpy as np 169s File "/usr/lib/python3/dist-packages/numpy/__init__.py", line 135, in 169s raise ImportError(msg) from e 169s ImportError: Error importing numpy: you should not try to import numpy from 169s its source directory; please exit the numpy source tree, and relaunch 169s your python interpreter from there. 169s 169s 169s ====================================================================== 169s ERROR: tests.unit.build_tests.mapper_tests.test_build (unittest.loader._FailedTest.tests.unit.build_tests.mapper_tests.test_build) 169s ---------------------------------------------------------------------- 169s ImportError: Failed to import test module: tests.unit.build_tests.mapper_tests.test_build 169s Traceback (most recent call last): 169s File "/usr/lib/python3/dist-packages/numpy/core/__init__.py", line 24, in 169s from . import multiarray 169s File "/usr/lib/python3/dist-packages/numpy/core/multiarray.py", line 10, in 169s from . import overrides 169s File "/usr/lib/python3/dist-packages/numpy/core/overrides.py", line 8, in 169s from numpy.core._multiarray_umath import ( 169s add_docstring, _get_implementing_args, _ArrayFunctionDispatcher) 169s ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 169s 169s During handling of the above exception, another exception occurred: 169s 169s Traceback (most recent call last): 169s File "/usr/lib/python3/dist-packages/numpy/__init__.py", line 130, in 169s from numpy.__config__ import show as show_config 169s File "/usr/lib/python3/dist-packages/numpy/__config__.py", line 4, in 169s from numpy.core._multiarray_umath import ( 169s ...<3 lines>... 169s ) 169s File "/usr/lib/python3/dist-packages/numpy/core/__init__.py", line 50, in 169s raise ImportError(msg) 169s ImportError: 169s 169s IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 169s 169s Importing the numpy C-extensions failed. This error can happen for 169s many reasons, often due to issues with your setup or how NumPy was 169s installed. 169s 169s We have compiled some common reasons and troubleshooting tips at: 169s 169s https://numpy.org/devdocs/user/troubleshooting-importerror.html 169s 169s Please note and check the following: 169s 169s * The Python version is: Python3.13 from "/usr/bin/python3.13" 169s * The NumPy version is: "1.26.4" 169s 169s and make sure that they are the versions you expect. 169s Please carefully study the documentation linked above for further help. 169s 169s Original error was: No module named 'numpy.core._multiarray_umath' 169s 169s 169s The above exception was the direct cause of the following exception: 169s 169s Traceback (most recent call last): 169s File "/usr/lib/python3.13/unittest/loader.py", line 396, in _find_test_path 169s module = self._get_module_from_name(name) 169s File "/usr/lib/python3.13/unittest/loader.py", line 339, in _get_module_from_name 169s __import__(name) 169s ~~~~~~~~~~^^^^^^ 169s File "/tmp/autopkgtest.IFnIxF/autopkgtest_tmp/tests/unit/build_tests/mapper_tests/test_build.py", line 3, in 169s import numpy as np 169s File "/usr/lib/python3/dist-packages/numpy/__init__.py", line 135, in 169s raise ImportError(msg) from e 169s ImportError: Error importing numpy: you should not try to import numpy from 169s its source directory; please exit the numpy source tree, and relaunch 169s your python interpreter from there. 169s 169s 169s ====================================================================== 169s ERROR: tests.unit.build_tests.mapper_tests.test_build_datetime (unittest.loader._FailedTest.tests.unit.build_tests.mapper_tests.test_build_datetime) 169s ---------------------------------------------------------------------- 169s ImportError: Failed to import test module: tests.unit.build_tests.mapper_tests.test_build_datetime 169s Traceback (most recent call last): 169s File "/usr/lib/python3/dist-packages/numpy/core/__init__.py", line 24, in 169s from . import multiarray 169s File "/usr/lib/python3/dist-packages/numpy/core/multiarray.py", line 10, in 169s from . import overrides 169s File "/usr/lib/python3/dist-packages/numpy/core/overrides.py", line 8, in 169s from numpy.core._multiarray_umath import ( 169s add_docstring, _get_implementing_args, _ArrayFunctionDispatcher) 169s ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 169s 169s During handling of the above exception, another exception occurred: 169s 169s Traceback (most recent call last): 169s File "/usr/lib/python3/dist-packages/numpy/__init__.py", line 130, in 169s from numpy.__config__ import show as show_config 169s File "/usr/lib/python3/dist-packages/numpy/__config__.py", line 4, in 169s from numpy.core._multiarray_umath import ( 169s ...<3 lines>... 169s ) 169s File "/usr/lib/python3/dist-packages/numpy/core/__init__.py", line 50, in 169s raise ImportError(msg) 169s ImportError: 169s 169s IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 169s 169s Importing the numpy C-extensions failed. This error can happen for 169s many reasons, often due to issues with your setup or how NumPy was 169s installed. 169s 169s We have compiled some common reasons and troubleshooting tips at: 169s 169s https://numpy.org/devdocs/user/troubleshooting-importerror.html 169s 169s Please note and check the following: 169s 169s * The Python version is: Python3.13 from "/usr/bin/python3.13" 169s * The NumPy version is: "1.26.4" 169s 169s and make sure that they are the versions you expect. 169s Please carefully study the documentation linked above for further help. 169s 169s Original error was: No module named 'numpy.core._multiarray_umath' 169s 169s 169s The above exception was the direct cause of the following exception: 169s 169s Traceback (most recent call last): 169s File "/usr/lib/python3.13/unittest/loader.py", line 396, in _find_test_path 169s module = self._get_module_from_name(name) 169s File "/usr/lib/python3.13/unittest/loader.py", line 339, in _get_module_from_name 169s __import__(name) 169s ~~~~~~~~~~^^^^^^ 169s File "/tmp/autopkgtest.IFnIxF/autopkgtest_tmp/tests/unit/build_tests/mapper_tests/test_build_datetime.py", line 1, in 169s from hdmf.utils import docval, getargs 169s File "/usr/lib/python3/dist-packages/hdmf/__init__.py", line 1, in 169s from . import query 169s File "/usr/lib/python3/dist-packages/hdmf/query.py", line 3, in 169s import numpy as np 169s File "/usr/lib/python3/dist-packages/numpy/__init__.py", line 135, in 169s raise ImportError(msg) from e 169s ImportError: Error importing numpy: you should not try to import numpy from 169s its source directory; please exit the numpy source tree, and relaunch 169s your python interpreter from there. 169s 169s 169s ====================================================================== 169s ERROR: tests.unit.build_tests.mapper_tests.test_build_quantity (unittest.loader._FailedTest.tests.unit.build_tests.mapper_tests.test_build_quantity) 169s ---------------------------------------------------------------------- 169s ImportError: Failed to import test module: tests.unit.build_tests.mapper_tests.test_build_quantity 169s Traceback (most recent call last): 169s File "/usr/lib/python3/dist-packages/numpy/core/__init__.py", line 24, in 169s from . import multiarray 169s File "/usr/lib/python3/dist-packages/numpy/core/multiarray.py", line 10, in 169s from . import overrides 169s File "/usr/lib/python3/dist-packages/numpy/core/overrides.py", line 8, in 169s from numpy.core._multiarray_umath import ( 169s add_docstring, _get_implementing_args, _ArrayFunctionDispatcher) 169s ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 169s 169s During handling of the above exception, another exception occurred: 169s 169s Traceback (most recent call last): 169s File "/usr/lib/python3/dist-packages/numpy/__init__.py", line 130, in 169s from numpy.__config__ import show as show_config 169s File "/usr/lib/python3/dist-packages/numpy/__config__.py", line 4, in 169s from numpy.core._multiarray_umath import ( 169s ...<3 lines>... 169s ) 169s File "/usr/lib/python3/dist-packages/numpy/core/__init__.py", line 50, in 169s raise ImportError(msg) 169s ImportError: 169s 169s IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 169s 169s Importing the numpy C-extensions failed. This error can happen for 169s many reasons, often due to issues with your setup or how NumPy was 169s installed. 169s 169s We have compiled some common reasons and troubleshooting tips at: 169s 169s https://numpy.org/devdocs/user/troubleshooting-importerror.html 169s 169s Please note and check the following: 169s 169s * The Python version is: Python3.13 from "/usr/bin/python3.13" 169s * The NumPy version is: "1.26.4" 169s 169s and make sure that they are the versions you expect. 169s Please carefully study the documentation linked above for further help. 169s 169s Original error was: No module named 'numpy.core._multiarray_umath' 169s 169s 169s The above exception was the direct cause of the following exception: 169s 169s Traceback (most recent call last): 169s File "/usr/lib/python3.13/unittest/loader.py", line 396, in _find_test_path 169s module = self._get_module_from_name(name) 169s File "/usr/lib/python3.13/unittest/loader.py", line 339, in _get_module_from_name 169s __import__(name) 169s ~~~~~~~~~~^^^^^^ 169s File "/tmp/autopkgtest.IFnIxF/autopkgtest_tmp/tests/unit/build_tests/mapper_tests/test_build_quantity.py", line 1, in 169s from hdmf import Container, Data 169s File "/usr/lib/python3/dist-packages/hdmf/__init__.py", line 1, in 169s from . import query 169s File "/usr/lib/python3/dist-packages/hdmf/query.py", line 3, in 169s import numpy as np 169s File "/usr/lib/python3/dist-packages/numpy/__init__.py", line 135, in 169s raise ImportError(msg) from e 169s ImportError: Error importing numpy: you should not try to import numpy from 169s its source directory; please exit the numpy source tree, and relaunch 169s your python interpreter from there. 169s 169s 169s ====================================================================== 169s ERROR: tests.unit.build_tests.test_builder (unittest.loader._FailedTest.tests.unit.build_tests.test_builder) 169s ---------------------------------------------------------------------- 169s ImportError: Failed to import test module: tests.unit.build_tests.test_builder 169s Traceback (most recent call last): 169s File "/usr/lib/python3/dist-packages/numpy/core/__init__.py", line 24, in 169s from . import multiarray 169s File "/usr/lib/python3/dist-packages/numpy/core/multiarray.py", line 10, in 169s from . import overrides 169s File "/usr/lib/python3/dist-packages/numpy/core/overrides.py", line 8, in 169s from numpy.core._multiarray_umath import ( 169s add_docstring, _get_implementing_args, _ArrayFunctionDispatcher) 169s ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 169s 169s During handling of the above exception, another exception occurred: 169s 169s Traceback (most recent call last): 169s File "/usr/lib/python3/dist-packages/numpy/__init__.py", line 130, in 169s from numpy.__config__ import show as show_config 169s File "/usr/lib/python3/dist-packages/numpy/__config__.py", line 4, in 169s from numpy.core._multiarray_umath import ( 169s ...<3 lines>... 169s ) 169s File "/usr/lib/python3/dist-packages/numpy/core/__init__.py", line 50, in 169s raise ImportError(msg) 169s ImportError: 169s 169s IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 169s 169s Importing the numpy C-extensions failed. This error can happen for 169s many reasons, often due to issues with your setup or how NumPy was 169s installed. 169s 169s We have compiled some common reasons and troubleshooting tips at: 169s 169s https://numpy.org/devdocs/user/troubleshooting-importerror.html 169s 169s Please note and check the following: 169s 169s * The Python version is: Python3.13 from "/usr/bin/python3.13" 169s * The NumPy version is: "1.26.4" 169s 169s and make sure that they are the versions you expect. 169s Please carefully study the documentation linked above for further help. 169s 169s Original error was: No module named 'numpy.core._multiarray_umath' 169s 169s 169s The above exception was the direct cause of the following exception: 169s 169s Traceback (most recent call last): 169s File "/usr/lib/python3.13/unittest/loader.py", line 396, in _find_test_path 169s module = self._get_module_from_name(name) 169s File "/usr/lib/python3.13/unittest/loader.py", line 339, in _get_module_from_name 169s __import__(name) 169s ~~~~~~~~~~^^^^^^ 169s File "/tmp/autopkgtest.IFnIxF/autopkgtest_tmp/tests/unit/build_tests/test_builder.py", line 1, in 169s from hdmf.build import GroupBuilder, DatasetBuilder, LinkBuilder, ReferenceBuilder, RegionBuilder 169s File "/usr/lib/python3/dist-packages/hdmf/__init__.py", line 1, in 169s from . import query 169s File "/usr/lib/python3/dist-packages/hdmf/query.py", line 3, in 169s import numpy as np 169s File "/usr/lib/python3/dist-packages/numpy/__init__.py", line 135, in 169s raise ImportError(msg) from e 169s ImportError: Error importing numpy: you should not try to import numpy from 169s its source directory; please exit the numpy source tree, and relaunch 169s your python interpreter from there. 169s 169s 169s ====================================================================== 169s ERROR: tests.unit.build_tests.test_classgenerator (unittest.loader._FailedTest.tests.unit.build_tests.test_classgenerator) 169s ---------------------------------------------------------------------- 169s ImportError: Failed to import test module: tests.unit.build_tests.test_classgenerator 169s Traceback (most recent call last): 169s File "/usr/lib/python3/dist-packages/numpy/core/__init__.py", line 24, in 169s from . import multiarray 169s File "/usr/lib/python3/dist-packages/numpy/core/multiarray.py", line 10, in 169s from . import overrides 169s File "/usr/lib/python3/dist-packages/numpy/core/overrides.py", line 8, in 169s from numpy.core._multiarray_umath import ( 169s add_docstring, _get_implementing_args, _ArrayFunctionDispatcher) 169s ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 169s 169s During handling of the above exception, another exception occurred: 169s 169s Traceback (most recent call last): 169s File "/usr/lib/python3/dist-packages/numpy/__init__.py", line 130, in 169s from numpy.__config__ import show as show_config 169s File "/usr/lib/python3/dist-packages/numpy/__config__.py", line 4, in 169s from numpy.core._multiarray_umath import ( 169s ...<3 lines>... 169s ) 169s File "/usr/lib/python3/dist-packages/numpy/core/__init__.py", line 50, in 169s raise ImportError(msg) 169s ImportError: 169s 169s IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 169s 169s Importing the numpy C-extensions failed. This error can happen for 169s many reasons, often due to issues with your setup or how NumPy was 169s installed. 169s 169s We have compiled some common reasons and troubleshooting tips at: 169s 169s https://numpy.org/devdocs/user/troubleshooting-importerror.html 169s 169s Please note and check the following: 169s 169s * The Python version is: Python3.13 from "/usr/bin/python3.13" 169s * The NumPy version is: "1.26.4" 169s 169s and make sure that they are the versions you expect. 169s Please carefully study the documentation linked above for further help. 169s 169s Original error was: No module named 'numpy.core._multiarray_umath' 169s 169s 169s The above exception was the direct cause of the following exception: 169s 169s Traceback (most recent call last): 169s File "/usr/lib/python3.13/unittest/loader.py", line 396, in _find_test_path 169s module = self._get_module_from_name(name) 169s File "/usr/lib/python3.13/unittest/loader.py", line 339, in _get_module_from_name 169s __import__(name) 169s ~~~~~~~~~~^^^^^^ 169s File "/tmp/autopkgtest.IFnIxF/autopkgtest_tmp/tests/unit/build_tests/test_classgenerator.py", line 1, in 169s import numpy as np 169s File "/usr/lib/python3/dist-packages/numpy/__init__.py", line 135, in 169s raise ImportError(msg) from e 169s ImportError: Error importing numpy: you should not try to import numpy from 169s its source directory; please exit the numpy source tree, and relaunch 169s your python interpreter from there. 169s 169s 169s ====================================================================== 169s ERROR: tests.unit.build_tests.test_convert_dtype (unittest.loader._FailedTest.tests.unit.build_tests.test_convert_dtype) 169s ---------------------------------------------------------------------- 169s ImportError: Failed to import test module: tests.unit.build_tests.test_convert_dtype 169s Traceback (most recent call last): 169s File "/usr/lib/python3/dist-packages/numpy/core/__init__.py", line 24, in 169s from . import multiarray 169s File "/usr/lib/python3/dist-packages/numpy/core/multiarray.py", line 10, in 169s from . import overrides 169s File "/usr/lib/python3/dist-packages/numpy/core/overrides.py", line 8, in 169s from numpy.core._multiarray_umath import ( 169s add_docstring, _get_implementing_args, _ArrayFunctionDispatcher) 169s ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 169s 169s During handling of the above exception, another exception occurred: 169s 169s Traceback (most recent call last): 169s File "/usr/lib/python3/dist-packages/numpy/__init__.py", line 130, in 169s from numpy.__config__ import show as show_config 169s File "/usr/lib/python3/dist-packages/numpy/__config__.py", line 4, in 169s from numpy.core._multiarray_umath import ( 169s ...<3 lines>... 169s ) 169s File "/usr/lib/python3/dist-packages/numpy/core/__init__.py", line 50, in 169s raise ImportError(msg) 169s ImportError: 169s 169s IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 169s 169s Importing the numpy C-extensions failed. This error can happen for 169s many reasons, often due to issues with your setup or how NumPy was 169s installed. 169s 169s We have compiled some common reasons and troubleshooting tips at: 169s 169s https://numpy.org/devdocs/user/troubleshooting-importerror.html 169s 169s Please note and check the following: 169s 169s * The Python version is: Python3.13 from "/usr/bin/python3.13" 169s * The NumPy version is: "1.26.4" 169s 169s and make sure that they are the versions you expect. 169s Please carefully study the documentation linked above for further help. 169s 169s Original error was: No module named 'numpy.core._multiarray_umath' 169s 169s 169s The above exception was the direct cause of the following exception: 169s 169s Traceback (most recent call last): 169s File "/usr/lib/python3.13/unittest/loader.py", line 396, in _find_test_path 169s module = self._get_module_from_name(name) 169s File "/usr/lib/python3.13/unittest/loader.py", line 339, in _get_module_from_name 169s __import__(name) 169s ~~~~~~~~~~^^^^^^ 169s File "/tmp/autopkgtest.IFnIxF/autopkgtest_tmp/tests/unit/build_tests/test_convert_dtype.py", line 3, in 169s import numpy as np 169s File "/usr/lib/python3/dist-packages/numpy/__init__.py", line 135, in 169s raise ImportError(msg) from e 169s ImportError: Error importing numpy: you should not try to import numpy from 169s its source directory; please exit the numpy source tree, and relaunch 169s your python interpreter from there. 169s 169s 169s ====================================================================== 169s ERROR: tests.unit.build_tests.test_io_manager (unittest.loader._FailedTest.tests.unit.build_tests.test_io_manager) 169s ---------------------------------------------------------------------- 169s ImportError: Failed to import test module: tests.unit.build_tests.test_io_manager 169s Traceback (most recent call last): 169s File "/usr/lib/python3/dist-packages/numpy/core/__init__.py", line 24, in 169s from . import multiarray 169s File "/usr/lib/python3/dist-packages/numpy/core/multiarray.py", line 10, in 169s from . import overrides 169s File "/usr/lib/python3/dist-packages/numpy/core/overrides.py", line 8, in 169s from numpy.core._multiarray_umath import ( 169s add_docstring, _get_implementing_args, _ArrayFunctionDispatcher) 169s ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 169s 169s During handling of the above exception, another exception occurred: 169s 169s Traceback (most recent call last): 169s File "/usr/lib/python3/dist-packages/numpy/__init__.py", line 130, in 169s from numpy.__config__ import show as show_config 169s File "/usr/lib/python3/dist-packages/numpy/__config__.py", line 4, in 169s from numpy.core._multiarray_umath import ( 169s ...<3 lines>... 169s ) 169s File "/usr/lib/python3/dist-packages/numpy/core/__init__.py", line 50, in 169s raise ImportError(msg) 169s ImportError: 169s 169s IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 169s 169s Importing the numpy C-extensions failed. This error can happen for 169s many reasons, often due to issues with your setup or how NumPy was 169s installed. 169s 169s We have compiled some common reasons and troubleshooting tips at: 169s 169s https://numpy.org/devdocs/user/troubleshooting-importerror.html 169s 169s Please note and check the following: 169s 169s * The Python version is: Python3.13 from "/usr/bin/python3.13" 169s * The NumPy version is: "1.26.4" 169s 169s and make sure that they are the versions you expect. 169s Please carefully study the documentation linked above for further help. 169s 169s Original error was: No module named 'numpy.core._multiarray_umath' 169s 169s 169s The above exception was the direct cause of the following exception: 169s 169s Traceback (most recent call last): 169s File "/usr/lib/python3.13/unittest/loader.py", line 396, in _find_test_path 169s module = self._get_module_from_name(name) 169s File "/usr/lib/python3.13/unittest/loader.py", line 339, in _get_module_from_name 169s __import__(name) 169s ~~~~~~~~~~^^^^^^ 169s File "/tmp/autopkgtest.IFnIxF/autopkgtest_tmp/tests/unit/build_tests/test_io_manager.py", line 3, in 169s from hdmf.build import GroupBuilder, DatasetBuilder, ObjectMapper, BuildManager, TypeMap, ContainerConfigurationError 169s File "/usr/lib/python3/dist-packages/hdmf/__init__.py", line 1, in 169s from . import query 169s File "/usr/lib/python3/dist-packages/hdmf/query.py", line 3, in 169s import numpy as np 169s File "/usr/lib/python3/dist-packages/numpy/__init__.py", line 135, in 169s raise ImportError(msg) from e 169s ImportError: Error importing numpy: you should not try to import numpy from 169s its source directory; please exit the numpy source tree, and relaunch 169s your python interpreter from there. 169s 169s 169s ====================================================================== 169s ERROR: tests.unit.build_tests.test_io_map (unittest.loader._FailedTest.tests.unit.build_tests.test_io_map) 169s ---------------------------------------------------------------------- 169s ImportError: Failed to import test module: tests.unit.build_tests.test_io_map 169s Traceback (most recent call last): 169s File "/usr/lib/python3/dist-packages/numpy/core/__init__.py", line 24, in 169s from . import multiarray 169s File "/usr/lib/python3/dist-packages/numpy/core/multiarray.py", line 10, in 169s from . import overrides 169s File "/usr/lib/python3/dist-packages/numpy/core/overrides.py", line 8, in 169s from numpy.core._multiarray_umath import ( 169s add_docstring, _get_implementing_args, _ArrayFunctionDispatcher) 169s ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 169s 169s During handling of the above exception, another exception occurred: 169s 169s Traceback (most recent call last): 169s File "/usr/lib/python3/dist-packages/numpy/__init__.py", line 130, in 169s from numpy.__config__ import show as show_config 169s File "/usr/lib/python3/dist-packages/numpy/__config__.py", line 4, in 169s from numpy.core._multiarray_umath import ( 169s ...<3 lines>... 169s ) 169s File "/usr/lib/python3/dist-packages/numpy/core/__init__.py", line 50, in 169s raise ImportError(msg) 169s ImportError: 169s 169s IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 169s 169s Importing the numpy C-extensions failed. This error can happen for 169s many reasons, often due to issues with your setup or how NumPy was 169s installed. 169s 169s We have compiled some common reasons and troubleshooting tips at: 169s 169s https://numpy.org/devdocs/user/troubleshooting-importerror.html 169s 169s Please note and check the following: 169s 169s * The Python version is: Python3.13 from "/usr/bin/python3.13" 169s * The NumPy version is: "1.26.4" 169s 169s and make sure that they are the versions you expect. 169s Please carefully study the documentation linked above for further help. 169s 169s Original error was: No module named 'numpy.core._multiarray_umath' 169s 169s 169s The above exception was the direct cause of the following exception: 169s 169s Traceback (most recent call last): 169s File "/usr/lib/python3.13/unittest/loader.py", line 396, in _find_test_path 169s module = self._get_module_from_name(name) 169s File "/usr/lib/python3.13/unittest/loader.py", line 339, in _get_module_from_name 169s __import__(name) 169s ~~~~~~~~~~^^^^^^ 169s File "/tmp/autopkgtest.IFnIxF/autopkgtest_tmp/tests/unit/build_tests/test_io_map.py", line 1, in 169s from hdmf.utils import StrDataset, docval, getargs 169s File "/usr/lib/python3/dist-packages/hdmf/__init__.py", line 1, in 169s from . import query 169s File "/usr/lib/python3/dist-packages/hdmf/query.py", line 3, in 169s import numpy as np 169s File "/usr/lib/python3/dist-packages/numpy/__init__.py", line 135, in 169s raise ImportError(msg) from e 169s ImportError: Error importing numpy: you should not try to import numpy from 169s its source directory; please exit the numpy source tree, and relaunch 169s your python interpreter from there. 169s 169s 169s ====================================================================== 169s ERROR: tests.unit.build_tests.test_io_map_data (unittest.loader._FailedTest.tests.unit.build_tests.test_io_map_data) 169s ---------------------------------------------------------------------- 169s ImportError: Failed to import test module: tests.unit.build_tests.test_io_map_data 169s Traceback (most recent call last): 169s File "/usr/lib/python3/dist-packages/h5py/__init__.py", line 24, in 169s from . import _debian_h5py_serial as _h5py 169s File "/usr/lib/python3/dist-packages/h5py/_debian_h5py_serial/__init__.py", line 25, in 169s from . import _errors 169s ImportError: cannot import name '_errors' from partially initialized module 'h5py._debian_h5py_serial' (most likely due to a circular import) (/usr/lib/python3/dist-packages/h5py/_debian_h5py_serial/__init__.py) 169s 169s During handling of the above exception, another exception occurred: 169s 169s Traceback (most recent call last): 169s File "/usr/lib/python3.13/unittest/loader.py", line 396, in _find_test_path 169s module = self._get_module_from_name(name) 169s File "/usr/lib/python3.13/unittest/loader.py", line 339, in _get_module_from_name 169s __import__(name) 169s ~~~~~~~~~~^^^^^^ 169s File "/tmp/autopkgtest.IFnIxF/autopkgtest_tmp/tests/unit/build_tests/test_io_map_data.py", line 3, in 169s import h5py 169s File "/usr/lib/python3/dist-packages/h5py/__init__.py", line 26, in 169s from . import _debian_h5py_mpi as _h5py 169s ImportError: cannot import name '_debian_h5py_mpi' from partially initialized module 'h5py' (most likely due to a circular import) (/usr/lib/python3/dist-packages/h5py/__init__.py) 169s 169s 169s ====================================================================== 169s ERROR: tests.unit.common.test_alignedtable (unittest.loader._FailedTest.tests.unit.common.test_alignedtable) 169s ---------------------------------------------------------------------- 169s ImportError: Failed to import test module: tests.unit.common.test_alignedtable 169s Traceback (most recent call last): 169s File "/usr/lib/python3/dist-packages/numpy/core/__init__.py", line 24, in 169s from . import multiarray 169s File "/usr/lib/python3/dist-packages/numpy/core/multiarray.py", line 10, in 169s from . import overrides 169s File "/usr/lib/python3/dist-packages/numpy/core/overrides.py", line 8, in 169s from numpy.core._multiarray_umath import ( 169s add_docstring, _get_implementing_args, _ArrayFunctionDispatcher) 169s ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 169s 169s During handling of the above exception, another exception occurred: 169s 169s Traceback (most recent call last): 169s File "/usr/lib/python3/dist-packages/numpy/__init__.py", line 130, in 169s from numpy.__config__ import show as show_config 169s File "/usr/lib/python3/dist-packages/numpy/__config__.py", line 4, in 169s from numpy.core._multiarray_umath import ( 169s ...<3 lines>... 169s ) 169s File "/usr/lib/python3/dist-packages/numpy/core/__init__.py", line 50, in 169s raise ImportError(msg) 169s ImportError: 169s 169s IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 169s 169s Importing the numpy C-extensions failed. This error can happen for 169s many reasons, often due to issues with your setup or how NumPy was 169s installed. 169s 169s We have compiled some common reasons and troubleshooting tips at: 169s 169s https://numpy.org/devdocs/user/troubleshooting-importerror.html 169s 169s Please note and check the following: 169s 169s * The Python version is: Python3.13 from "/usr/bin/python3.13" 169s * The NumPy version is: "1.26.4" 169s 169s and make sure that they are the versions you expect. 169s Please carefully study the documentation linked above for further help. 169s 169s Original error was: No module named 'numpy.core._multiarray_umath' 169s 169s 169s The above exception was the direct cause of the following exception: 169s 169s Traceback (most recent call last): 169s File "/usr/lib/python3.13/unittest/loader.py", line 396, in _find_test_path 169s module = self._get_module_from_name(name) 169s File "/usr/lib/python3.13/unittest/loader.py", line 339, in _get_module_from_name 169s __import__(name) 169s ~~~~~~~~~~^^^^^^ 169s File "/tmp/autopkgtest.IFnIxF/autopkgtest_tmp/tests/unit/common/test_alignedtable.py", line 1, in 169s import numpy as np 169s File "/usr/lib/python3/dist-packages/numpy/__init__.py", line 135, in 169s raise ImportError(msg) from e 169s ImportError: Error importing numpy: you should not try to import numpy from 169s its source directory; please exit the numpy source tree, and relaunch 169s your python interpreter from there. 169s 169s 169s ====================================================================== 169s ERROR: tests.unit.common.test_common (unittest.loader._FailedTest.tests.unit.common.test_common) 169s ---------------------------------------------------------------------- 169s ImportError: Failed to import test module: tests.unit.common.test_common 169s Traceback (most recent call last): 169s File "/usr/lib/python3/dist-packages/numpy/core/__init__.py", line 24, in 169s from . import multiarray 169s File "/usr/lib/python3/dist-packages/numpy/core/multiarray.py", line 10, in 169s from . import overrides 169s File "/usr/lib/python3/dist-packages/numpy/core/overrides.py", line 8, in 169s from numpy.core._multiarray_umath import ( 169s add_docstring, _get_implementing_args, _ArrayFunctionDispatcher) 169s ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 169s 169s During handling of the above exception, another exception occurred: 169s 169s Traceback (most recent call last): 169s File "/usr/lib/python3/dist-packages/numpy/__init__.py", line 130, in 169s from numpy.__config__ import show as show_config 169s File "/usr/lib/python3/dist-packages/numpy/__config__.py", line 4, in 169s from numpy.core._multiarray_umath import ( 169s ...<3 lines>... 169s ) 169s File "/usr/lib/python3/dist-packages/numpy/core/__init__.py", line 50, in 169s raise ImportError(msg) 169s ImportError: 169s 169s IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 169s 169s Importing the numpy C-extensions failed. This error can happen for 169s many reasons, often due to issues with your setup or how NumPy was 169s installed. 169s 169s We have compiled some common reasons and troubleshooting tips at: 169s 169s https://numpy.org/devdocs/user/troubleshooting-importerror.html 169s 169s Please note and check the following: 169s 169s * The Python version is: Python3.13 from "/usr/bin/python3.13" 169s * The NumPy version is: "1.26.4" 169s 169s and make sure that they are the versions you expect. 169s Please carefully study the documentation linked above for further help. 169s 169s Original error was: No module named 'numpy.core._multiarray_umath' 169s 169s 169s The above exception was the direct cause of the following exception: 169s 169s Traceback (most recent call last): 169s File "/usr/lib/python3.13/unittest/loader.py", line 396, in _find_test_path 169s module = self._get_module_from_name(name) 169s File "/usr/lib/python3.13/unittest/loader.py", line 339, in _get_module_from_name 169s __import__(name) 169s ~~~~~~~~~~^^^^^^ 169s File "/tmp/autopkgtest.IFnIxF/autopkgtest_tmp/tests/unit/common/test_common.py", line 1, in 169s from hdmf import Data, Container 169s File "/usr/lib/python3/dist-packages/hdmf/__init__.py", line 1, in 169s from . import query 169s File "/usr/lib/python3/dist-packages/hdmf/query.py", line 3, in 169s import numpy as np 169s File "/usr/lib/python3/dist-packages/numpy/__init__.py", line 135, in 169s raise ImportError(msg) from e 169s ImportError: Error importing numpy: you should not try to import numpy from 169s its source directory; please exit the numpy source tree, and relaunch 169s your python interpreter from there. 169s 169s 169s ====================================================================== 169s ERROR: tests.unit.common.test_common_io (unittest.loader._FailedTest.tests.unit.common.test_common_io) 169s ---------------------------------------------------------------------- 169s ImportError: Failed to import test module: tests.unit.common.test_common_io 169s Traceback (most recent call last): 169s File "/usr/lib/python3/dist-packages/h5py/__init__.py", line 24, in 169s from . import _debian_h5py_serial as _h5py 169s File "/usr/lib/python3/dist-packages/h5py/_debian_h5py_serial/__init__.py", line 25, in 169s from . import _errors 169s ImportError: cannot import name '_errors' from partially initialized module 'h5py._debian_h5py_serial' (most likely due to a circular import) (/usr/lib/python3/dist-packages/h5py/_debian_h5py_serial/__init__.py) 169s 169s During handling of the above exception, another exception occurred: 169s 169s Traceback (most recent call last): 169s File "/usr/lib/python3.13/unittest/loader.py", line 396, in _find_test_path 169s module = self._get_module_from_name(name) 169s File "/usr/lib/python3.13/unittest/loader.py", line 339, in _get_module_from_name 169s __import__(name) 169s ~~~~~~~~~~^^^^^^ 169s File "/tmp/autopkgtest.IFnIxF/autopkgtest_tmp/tests/unit/common/test_common_io.py", line 1, in 169s from h5py import File 169s File "/usr/lib/python3/dist-packages/h5py/__init__.py", line 26, in 169s from . import _debian_h5py_mpi as _h5py 169s ImportError: cannot import name '_debian_h5py_mpi' from partially initialized module 'h5py' (most likely due to a circular import) (/usr/lib/python3/dist-packages/h5py/__init__.py) 169s 169s 169s ====================================================================== 169s ERROR: tests.unit.common.test_generate_table (unittest.loader._FailedTest.tests.unit.common.test_generate_table) 169s ---------------------------------------------------------------------- 169s ImportError: Failed to import test module: tests.unit.common.test_generate_table 169s Traceback (most recent call last): 169s File "/usr/lib/python3/dist-packages/numpy/core/__init__.py", line 24, in 169s from . import multiarray 169s File "/usr/lib/python3/dist-packages/numpy/core/multiarray.py", line 10, in 169s from . import overrides 169s File "/usr/lib/python3/dist-packages/numpy/core/overrides.py", line 8, in 169s from numpy.core._multiarray_umath import ( 169s add_docstring, _get_implementing_args, _ArrayFunctionDispatcher) 169s ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 169s 169s During handling of the above exception, another exception occurred: 169s 169s Traceback (most recent call last): 169s File "/usr/lib/python3/dist-packages/numpy/__init__.py", line 130, in 169s from numpy.__config__ import show as show_config 169s File "/usr/lib/python3/dist-packages/numpy/__config__.py", line 4, in 169s from numpy.core._multiarray_umath import ( 169s ...<3 lines>... 169s ) 169s File "/usr/lib/python3/dist-packages/numpy/core/__init__.py", line 50, in 169s raise ImportError(msg) 169s ImportError: 169s 169s IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 169s 169s Importing the numpy C-extensions failed. This error can happen for 169s many reasons, often due to issues with your setup or how NumPy was 169s installed. 169s 169s We have compiled some common reasons and troubleshooting tips at: 169s 169s https://numpy.org/devdocs/user/troubleshooting-importerror.html 169s 169s Please note and check the following: 169s 169s * The Python version is: Python3.13 from "/usr/bin/python3.13" 169s * The NumPy version is: "1.26.4" 169s 169s and make sure that they are the versions you expect. 169s Please carefully study the documentation linked above for further help. 169s 169s Original error was: No module named 'numpy.core._multiarray_umath' 169s 169s 169s The above exception was the direct cause of the following exception: 169s 169s Traceback (most recent call last): 169s File "/usr/lib/python3.13/unittest/loader.py", line 396, in _find_test_path 169s module = self._get_module_from_name(name) 169s File "/usr/lib/python3.13/unittest/loader.py", line 339, in _get_module_from_name 169s __import__(name) 169s ~~~~~~~~~~^^^^^^ 169s File "/tmp/autopkgtest.IFnIxF/autopkgtest_tmp/tests/unit/common/test_generate_table.py", line 1, in 169s import numpy as np 169s File "/usr/lib/python3/dist-packages/numpy/__init__.py", line 135, in 169s raise ImportError(msg) from e 169s ImportError: Error importing numpy: you should not try to import numpy from 169s its source directory; please exit the numpy source tree, and relaunch 169s your python interpreter from there. 169s 169s 169s ====================================================================== 169s ERROR: tests.unit.common.test_linkedtables (unittest.loader._FailedTest.tests.unit.common.test_linkedtables) 169s ---------------------------------------------------------------------- 169s ImportError: Failed to import test module: tests.unit.common.test_linkedtables 169s Traceback (most recent call last): 169s File "/usr/lib/python3/dist-packages/numpy/core/__init__.py", line 24, in 169s from . import multiarray 169s File "/usr/lib/python3/dist-packages/numpy/core/multiarray.py", line 10, in 169s from . import overrides 169s File "/usr/lib/python3/dist-packages/numpy/core/overrides.py", line 8, in 169s from numpy.core._multiarray_umath import ( 169s add_docstring, _get_implementing_args, _ArrayFunctionDispatcher) 169s ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 169s 169s During handling of the above exception, another exception occurred: 169s 169s Traceback (most recent call last): 169s File "/usr/lib/python3/dist-packages/numpy/__init__.py", line 130, in 169s from numpy.__config__ import show as show_config 169s File "/usr/lib/python3/dist-packages/numpy/__config__.py", line 4, in 169s from numpy.core._multiarray_umath import ( 169s ...<3 lines>... 169s ) 169s File "/usr/lib/python3/dist-packages/numpy/core/__init__.py", line 50, in 169s raise ImportError(msg) 169s ImportError: 169s 169s IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 169s 169s Importing the numpy C-extensions failed. This error can happen for 169s many reasons, often due to issues with your setup or how NumPy was 169s installed. 169s 169s We have compiled some common reasons and troubleshooting tips at: 169s 169s https://numpy.org/devdocs/user/troubleshooting-importerror.html 169s 169s Please note and check the following: 169s 169s * The Python version is: Python3.13 from "/usr/bin/python3.13" 169s * The NumPy version is: "1.26.4" 169s 169s and make sure that they are the versions you expect. 169s Please carefully study the documentation linked above for further help. 169s 169s Original error was: No module named 'numpy.core._multiarray_umath' 169s 169s 169s The above exception was the direct cause of the following exception: 169s 169s Traceback (most recent call last): 169s File "/usr/lib/python3.13/unittest/loader.py", line 396, in _find_test_path 169s module = self._get_module_from_name(name) 169s File "/usr/lib/python3.13/unittest/loader.py", line 339, in _get_module_from_name 169s __import__(name) 169s ~~~~~~~~~~^^^^^^ 169s File "/tmp/autopkgtest.IFnIxF/autopkgtest_tmp/tests/unit/common/test_linkedtables.py", line 6, in 169s import numpy as np 169s File "/usr/lib/python3/dist-packages/numpy/__init__.py", line 135, in 169s raise ImportError(msg) from e 169s ImportError: Error importing numpy: you should not try to import numpy from 169s its source directory; please exit the numpy source tree, and relaunch 169s your python interpreter from there. 169s 169s 169s ====================================================================== 169s ERROR: tests.unit.common.test_multi (unittest.loader._FailedTest.tests.unit.common.test_multi) 169s ---------------------------------------------------------------------- 169s ImportError: Failed to import test module: tests.unit.common.test_multi 169s Traceback (most recent call last): 169s File "/usr/lib/python3/dist-packages/numpy/core/__init__.py", line 24, in 169s from . import multiarray 169s File "/usr/lib/python3/dist-packages/numpy/core/multiarray.py", line 10, in 169s from . import overrides 169s File "/usr/lib/python3/dist-packages/numpy/core/overrides.py", line 8, in 169s from numpy.core._multiarray_umath import ( 169s add_docstring, _get_implementing_args, _ArrayFunctionDispatcher) 169s ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 169s 169s During handling of the above exception, another exception occurred: 169s 169s Traceback (most recent call last): 169s File "/usr/lib/python3/dist-packages/numpy/__init__.py", line 130, in 169s from numpy.__config__ import show as show_config 169s File "/usr/lib/python3/dist-packages/numpy/__config__.py", line 4, in 169s from numpy.core._multiarray_umath import ( 169s ...<3 lines>... 169s ) 169s File "/usr/lib/python3/dist-packages/numpy/core/__init__.py", line 50, in 169s raise ImportError(msg) 169s ImportError: 169s 169s IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 169s 169s Importing the numpy C-extensions failed. This error can happen for 169s many reasons, often due to issues with your setup or how NumPy was 169s installed. 169s 169s We have compiled some common reasons and troubleshooting tips at: 169s 169s https://numpy.org/devdocs/user/troubleshooting-importerror.html 169s 169s Please note and check the following: 169s 169s * The Python version is: Python3.13 from "/usr/bin/python3.13" 169s * The NumPy version is: "1.26.4" 169s 169s and make sure that they are the versions you expect. 169s Please carefully study the documentation linked above for further help. 169s 169s Original error was: No module named 'numpy.core._multiarray_umath' 169s 169s 169s The above exception was the direct cause of the following exception: 169s 169s Traceback (most recent call last): 169s File "/usr/lib/python3.13/unittest/loader.py", line 396, in _find_test_path 169s module = self._get_module_from_name(name) 169s File "/usr/lib/python3.13/unittest/loader.py", line 339, in _get_module_from_name 169s __import__(name) 169s ~~~~~~~~~~^^^^^^ 169s File "/tmp/autopkgtest.IFnIxF/autopkgtest_tmp/tests/unit/common/test_multi.py", line 1, in 169s from hdmf.common import SimpleMultiContainer 169s File "/usr/lib/python3/dist-packages/hdmf/__init__.py", line 1, in 169s from . import query 169s File "/usr/lib/python3/dist-packages/hdmf/query.py", line 3, in 169s import numpy as np 169s File "/usr/lib/python3/dist-packages/numpy/__init__.py", line 135, in 169s raise ImportError(msg) from e 169s ImportError: Error importing numpy: you should not try to import numpy from 169s its source directory; please exit the numpy source tree, and relaunch 169s your python interpreter from there. 169s 169s 169s ====================================================================== 169s ERROR: tests.unit.common.test_resources (unittest.loader._FailedTest.tests.unit.common.test_resources) 169s ---------------------------------------------------------------------- 169s ImportError: Failed to import test module: tests.unit.common.test_resources 169s Traceback (most recent call last): 169s File "/usr/lib/python3.13/unittest/loader.py", line 396, in _find_test_path 169s module = self._get_module_from_name(name) 169s File "/usr/lib/python3.13/unittest/loader.py", line 339, in _get_module_from_name 169s __import__(name) 169s ~~~~~~~~~~^^^^^^ 169s File "/tmp/autopkgtest.IFnIxF/autopkgtest_tmp/tests/unit/common/test_resources.py", line 1, in 169s import pandas as pd 169s File "/usr/lib/python3/dist-packages/pandas/__init__.py", line 19, in 169s raise ImportError( 169s "Unable to import required dependencies:\n" + "\n".join(_missing_dependencies) 169s ) 169s ImportError: Unable to import required dependencies: 169s numpy: Error importing numpy: you should not try to import numpy from 169s its source directory; please exit the numpy source tree, and relaunch 169s your python interpreter from there. 169s 169s 169s ====================================================================== 169s ERROR: tests.unit.common.test_sparse (unittest.loader._FailedTest.tests.unit.common.test_sparse) 169s ---------------------------------------------------------------------- 169s ImportError: Failed to import test module: tests.unit.common.test_sparse 169s Traceback (most recent call last): 169s File "/usr/lib/python3/dist-packages/numpy/core/__init__.py", line 24, in 169s from . import multiarray 169s File "/usr/lib/python3/dist-packages/numpy/core/multiarray.py", line 10, in 169s from . import overrides 169s File "/usr/lib/python3/dist-packages/numpy/core/overrides.py", line 8, in 169s from numpy.core._multiarray_umath import ( 169s add_docstring, _get_implementing_args, _ArrayFunctionDispatcher) 169s ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 169s 169s During handling of the above exception, another exception occurred: 169s 169s Traceback (most recent call last): 169s File "/usr/lib/python3/dist-packages/numpy/__init__.py", line 130, in 169s from numpy.__config__ import show as show_config 169s File "/usr/lib/python3/dist-packages/numpy/__config__.py", line 4, in 169s from numpy.core._multiarray_umath import ( 169s ...<3 lines>... 169s ) 169s File "/usr/lib/python3/dist-packages/numpy/core/__init__.py", line 50, in 169s raise ImportError(msg) 169s ImportError: 169s 169s IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 169s 169s Importing the numpy C-extensions failed. This error can happen for 169s many reasons, often due to issues with your setup or how NumPy was 169s installed. 169s 169s We have compiled some common reasons and troubleshooting tips at: 169s 169s https://numpy.org/devdocs/user/troubleshooting-importerror.html 169s 169s Please note and check the following: 169s 169s * The Python version is: Python3.13 from "/usr/bin/python3.13" 169s * The NumPy version is: "1.26.4" 169s 169s and make sure that they are the versions you expect. 169s Please carefully study the documentation linked above for further help. 169s 169s Original error was: No module named 'numpy.core._multiarray_umath' 169s 169s 169s The above exception was the direct cause of the following exception: 169s 169s Traceback (most recent call last): 169s File "/usr/lib/python3.13/unittest/loader.py", line 396, in _find_test_path 169s module = self._get_module_from_name(name) 169s File "/usr/lib/python3.13/unittest/loader.py", line 339, in _get_module_from_name 169s __import__(name) 169s ~~~~~~~~~~^^^^^^ 169s File "/tmp/autopkgtest.IFnIxF/autopkgtest_tmp/tests/unit/common/test_sparse.py", line 1, in 169s from hdmf.common import CSRMatrix 169s File "/usr/lib/python3/dist-packages/hdmf/__init__.py", line 1, in 169s from . import query 169s File "/usr/lib/python3/dist-packages/hdmf/query.py", line 3, in 169s import numpy as np 169s File "/usr/lib/python3/dist-packages/numpy/__init__.py", line 135, in 169s raise ImportError(msg) from e 169s ImportError: Error importing numpy: you should not try to import numpy from 169s its source directory; please exit the numpy source tree, and relaunch 169s your python interpreter from there. 169s 169s 169s ====================================================================== 169s ERROR: tests.unit.common.test_table (unittest.loader._FailedTest.tests.unit.common.test_table) 169s ---------------------------------------------------------------------- 169s ImportError: Failed to import test module: tests.unit.common.test_table 169s Traceback (most recent call last): 169s File "/usr/lib/python3/dist-packages/h5py/__init__.py", line 24, in 169s from . import _debian_h5py_serial as _h5py 169s File "/usr/lib/python3/dist-packages/h5py/_debian_h5py_serial/__init__.py", line 25, in 169s from . import _errors 169s ImportError: cannot import name '_errors' from partially initialized module 'h5py._debian_h5py_serial' (most likely due to a circular import) (/usr/lib/python3/dist-packages/h5py/_debian_h5py_serial/__init__.py) 169s 169s During handling of the above exception, another exception occurred: 169s 169s Traceback (most recent call last): 169s File "/usr/lib/python3.13/unittest/loader.py", line 396, in _find_test_path 169s module = self._get_module_from_name(name) 169s File "/usr/lib/python3.13/unittest/loader.py", line 339, in _get_module_from_name 169s __import__(name) 169s ~~~~~~~~~~^^^^^^ 169s File "/tmp/autopkgtest.IFnIxF/autopkgtest_tmp/tests/unit/common/test_table.py", line 2, in 169s import h5py 169s File "/usr/lib/python3/dist-packages/h5py/__init__.py", line 26, in 169s from . import _debian_h5py_mpi as _h5py 169s ImportError: cannot import name '_debian_h5py_mpi' from partially initialized module 'h5py' (most likely due to a circular import) (/usr/lib/python3/dist-packages/h5py/__init__.py) 169s 169s 169s ====================================================================== 169s ERROR: tests.unit.spec_tests.test_attribute_spec (unittest.loader._FailedTest.tests.unit.spec_tests.test_attribute_spec) 169s ---------------------------------------------------------------------- 169s ImportError: Failed to import test module: tests.unit.spec_tests.test_attribute_spec 169s Traceback (most recent call last): 169s File "/usr/lib/python3/dist-packages/numpy/core/__init__.py", line 24, in 169s from . import multiarray 169s File "/usr/lib/python3/dist-packages/numpy/core/multiarray.py", line 10, in 169s from . import overrides 169s File "/usr/lib/python3/dist-packages/numpy/core/overrides.py", line 8, in 169s from numpy.core._multiarray_umath import ( 169s add_docstring, _get_implementing_args, _ArrayFunctionDispatcher) 169s ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 169s 169s During handling of the above exception, another exception occurred: 169s 169s Traceback (most recent call last): 169s File "/usr/lib/python3/dist-packages/numpy/__init__.py", line 130, in 169s from numpy.__config__ import show as show_config 169s File "/usr/lib/python3/dist-packages/numpy/__config__.py", line 4, in 169s from numpy.core._multiarray_umath import ( 169s ...<3 lines>... 169s ) 169s File "/usr/lib/python3/dist-packages/numpy/core/__init__.py", line 50, in 169s raise ImportError(msg) 169s ImportError: 169s 169s IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 169s 169s Importing the numpy C-extensions failed. This error can happen for 169s many reasons, often due to issues with your setup or how NumPy was 169s installed. 169s 169s We have compiled some common reasons and troubleshooting tips at: 169s 169s https://numpy.org/devdocs/user/troubleshooting-importerror.html 169s 169s Please note and check the following: 169s 169s * The Python version is: Python3.13 from "/usr/bin/python3.13" 169s * The NumPy version is: "1.26.4" 169s 169s and make sure that they are the versions you expect. 169s Please carefully study the documentation linked above for further help. 169s 169s Original error was: No module named 'numpy.core._multiarray_umath' 169s 169s 169s The above exception was the direct cause of the following exception: 169s 169s Traceback (most recent call last): 169s File "/usr/lib/python3.13/unittest/loader.py", line 396, in _find_test_path 169s module = self._get_module_from_name(name) 169s File "/usr/lib/python3.13/unittest/loader.py", line 339, in _get_module_from_name 169s __import__(name) 169s ~~~~~~~~~~^^^^^^ 169s File "/tmp/autopkgtest.IFnIxF/autopkgtest_tmp/tests/unit/spec_tests/test_attribute_spec.py", line 3, in 169s from hdmf.spec import AttributeSpec, RefSpec 169s File "/usr/lib/python3/dist-packages/hdmf/__init__.py", line 1, in 169s from . import query 169s File "/usr/lib/python3/dist-packages/hdmf/query.py", line 3, in 169s import numpy as np 169s File "/usr/lib/python3/dist-packages/numpy/__init__.py", line 135, in 169s raise ImportError(msg) from e 169s ImportError: Error importing numpy: you should not try to import numpy from 169s its source directory; please exit the numpy source tree, and relaunch 169s your python interpreter from there. 169s 169s 169s ====================================================================== 169s ERROR: tests.unit.spec_tests.test_dataset_spec (unittest.loader._FailedTest.tests.unit.spec_tests.test_dataset_spec) 169s ---------------------------------------------------------------------- 169s ImportError: Failed to import test module: tests.unit.spec_tests.test_dataset_spec 169s Traceback (most recent call last): 169s File "/usr/lib/python3/dist-packages/numpy/core/__init__.py", line 24, in 169s from . import multiarray 169s File "/usr/lib/python3/dist-packages/numpy/core/multiarray.py", line 10, in 169s from . import overrides 169s File "/usr/lib/python3/dist-packages/numpy/core/overrides.py", line 8, in 169s from numpy.core._multiarray_umath import ( 169s add_docstring, _get_implementing_args, _ArrayFunctionDispatcher) 169s ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 169s 169s During handling of the above exception, another exception occurred: 169s 169s Traceback (most recent call last): 169s File "/usr/lib/python3/dist-packages/numpy/__init__.py", line 130, in 169s from numpy.__config__ import show as show_config 169s File "/usr/lib/python3/dist-packages/numpy/__config__.py", line 4, in 169s from numpy.core._multiarray_umath import ( 169s ...<3 lines>... 169s ) 169s File "/usr/lib/python3/dist-packages/numpy/core/__init__.py", line 50, in 169s raise ImportError(msg) 169s ImportError: 169s 169s IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 169s 169s Importing the numpy C-extensions failed. This error can happen for 169s many reasons, often due to issues with your setup or how NumPy was 169s installed. 169s 169s We have compiled some common reasons and troubleshooting tips at: 169s 169s https://numpy.org/devdocs/user/troubleshooting-importerror.html 169s 169s Please note and check the following: 169s 169s * The Python version is: Python3.13 from "/usr/bin/python3.13" 169s * The NumPy version is: "1.26.4" 169s 169s and make sure that they are the versions you expect. 169s Please carefully study the documentation linked above for further help. 169s 169s Original error was: No module named 'numpy.core._multiarray_umath' 169s 169s 169s The above exception was the direct cause of the following exception: 169s 169s Traceback (most recent call last): 169s File "/usr/lib/python3.13/unittest/loader.py", line 396, in _find_test_path 169s module = self._get_module_from_name(name) 169s File "/usr/lib/python3.13/unittest/loader.py", line 339, in _get_module_from_name 169s __import__(name) 169s ~~~~~~~~~~^^^^^^ 169s File "/tmp/autopkgtest.IFnIxF/autopkgtest_tmp/tests/unit/spec_tests/test_dataset_spec.py", line 3, in 169s from hdmf.spec import GroupSpec, DatasetSpec, AttributeSpec, DtypeSpec, RefSpec 169s File "/usr/lib/python3/dist-packages/hdmf/__init__.py", line 1, in 169s from . import query 169s File "/usr/lib/python3/dist-packages/hdmf/query.py", line 3, in 169s import numpy as np 169s File "/usr/lib/python3/dist-packages/numpy/__init__.py", line 135, in 169s raise ImportError(msg) from e 169s ImportError: Error importing numpy: you should not try to import numpy from 169s its source directory; please exit the numpy source tree, and relaunch 169s your python interpreter from there. 169s 169s 169s ====================================================================== 169s ERROR: tests.unit.spec_tests.test_dtype_spec (unittest.loader._FailedTest.tests.unit.spec_tests.test_dtype_spec) 169s ---------------------------------------------------------------------- 169s ImportError: Failed to import test module: tests.unit.spec_tests.test_dtype_spec 169s Traceback (most recent call last): 169s File "/usr/lib/python3/dist-packages/numpy/core/__init__.py", line 24, in 169s from . import multiarray 169s File "/usr/lib/python3/dist-packages/numpy/core/multiarray.py", line 10, in 169s from . import overrides 169s File "/usr/lib/python3/dist-packages/numpy/core/overrides.py", line 8, in 169s from numpy.core._multiarray_umath import ( 169s add_docstring, _get_implementing_args, _ArrayFunctionDispatcher) 169s ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 169s 169s During handling of the above exception, another exception occurred: 169s 169s Traceback (most recent call last): 169s File "/usr/lib/python3/dist-packages/numpy/__init__.py", line 130, in 169s from numpy.__config__ import show as show_config 169s File "/usr/lib/python3/dist-packages/numpy/__config__.py", line 4, in 169s from numpy.core._multiarray_umath import ( 169s ...<3 lines>... 169s ) 169s File "/usr/lib/python3/dist-packages/numpy/core/__init__.py", line 50, in 169s raise ImportError(msg) 169s ImportError: 169s 169s IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 169s 169s Importing the numpy C-extensions failed. This error can happen for 169s many reasons, often due to issues with your setup or how NumPy was 169s installed. 169s 169s We have compiled some common reasons and troubleshooting tips at: 169s 169s https://numpy.org/devdocs/user/troubleshooting-importerror.html 169s 169s Please note and check the following: 169s 169s * The Python version is: Python3.13 from "/usr/bin/python3.13" 169s * The NumPy version is: "1.26.4" 169s 169s and make sure that they are the versions you expect. 169s Please carefully study the documentation linked above for further help. 169s 169s Original error was: No module named 'numpy.core._multiarray_umath' 169s 169s 169s The above exception was the direct cause of the following exception: 169s 169s Traceback (most recent call last): 169s File "/usr/lib/python3.13/unittest/loader.py", line 396, in _find_test_path 169s module = self._get_module_from_name(name) 169s File "/usr/lib/python3.13/unittest/loader.py", line 339, in _get_module_from_name 169s __import__(name) 169s ~~~~~~~~~~^^^^^^ 169s File "/tmp/autopkgtest.IFnIxF/autopkgtest_tmp/tests/unit/spec_tests/test_dtype_spec.py", line 1, in 169s from hdmf.spec import DtypeSpec, DtypeHelper, RefSpec 169s File "/usr/lib/python3/dist-packages/hdmf/__init__.py", line 1, in 169s from . import query 169s File "/usr/lib/python3/dist-packages/hdmf/query.py", line 3, in 169s import numpy as np 169s File "/usr/lib/python3/dist-packages/numpy/__init__.py", line 135, in 169s raise ImportError(msg) from e 169s ImportError: Error importing numpy: you should not try to import numpy from 169s its source directory; please exit the numpy source tree, and relaunch 169s your python interpreter from there. 169s 169s 169s ====================================================================== 169s ERROR: tests.unit.spec_tests.test_group_spec (unittest.loader._FailedTest.tests.unit.spec_tests.test_group_spec) 169s ---------------------------------------------------------------------- 169s ImportError: Failed to import test module: tests.unit.spec_tests.test_group_spec 169s Traceback (most recent call last): 169s File "/usr/lib/python3/dist-packages/numpy/core/__init__.py", line 24, in 169s from . import multiarray 169s File "/usr/lib/python3/dist-packages/numpy/core/multiarray.py", line 10, in 169s from . import overrides 169s File "/usr/lib/python3/dist-packages/numpy/core/overrides.py", line 8, in 169s from numpy.core._multiarray_umath import ( 169s add_docstring, _get_implementing_args, _ArrayFunctionDispatcher) 169s ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 169s 169s During handling of the above exception, another exception occurred: 169s 169s Traceback (most recent call last): 169s File "/usr/lib/python3/dist-packages/numpy/__init__.py", line 130, in 169s from numpy.__config__ import show as show_config 169s File "/usr/lib/python3/dist-packages/numpy/__config__.py", line 4, in 169s from numpy.core._multiarray_umath import ( 169s ...<3 lines>... 169s ) 169s File "/usr/lib/python3/dist-packages/numpy/core/__init__.py", line 50, in 169s raise ImportError(msg) 169s ImportError: 169s 169s IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 169s 169s Importing the numpy C-extensions failed. This error can happen for 169s many reasons, often due to issues with your setup or how NumPy was 169s installed. 169s 169s We have compiled some common reasons and troubleshooting tips at: 169s 169s https://numpy.org/devdocs/user/troubleshooting-importerror.html 169s 169s Please note and check the following: 169s 169s * The Python version is: Python3.13 from "/usr/bin/python3.13" 169s * The NumPy version is: "1.26.4" 169s 169s and make sure that they are the versions you expect. 169s Please carefully study the documentation linked above for further help. 169s 169s Original error was: No module named 'numpy.core._multiarray_umath' 169s 169s 169s The above exception was the direct cause of the following exception: 169s 169s Traceback (most recent call last): 169s File "/usr/lib/python3.13/unittest/loader.py", line 396, in _find_test_path 169s module = self._get_module_from_name(name) 169s File "/usr/lib/python3.13/unittest/loader.py", line 339, in _get_module_from_name 169s __import__(name) 169s ~~~~~~~~~~^^^^^^ 169s File "/tmp/autopkgtest.IFnIxF/autopkgtest_tmp/tests/unit/spec_tests/test_group_spec.py", line 3, in 169s from hdmf.spec import GroupSpec, DatasetSpec, AttributeSpec, LinkSpec 169s File "/usr/lib/python3/dist-packages/hdmf/__init__.py", line 1, in 169s from . import query 169s File "/usr/lib/python3/dist-packages/hdmf/query.py", line 3, in 169s import numpy as np 169s File "/usr/lib/python3/dist-packages/numpy/__init__.py", line 135, in 169s raise ImportError(msg) from e 169s ImportError: Error importing numpy: you should not try to import numpy from 169s its source directory; please exit the numpy source tree, and relaunch 169s your python interpreter from there. 169s 169s 169s ====================================================================== 169s ERROR: tests.unit.spec_tests.test_link_spec (unittest.loader._FailedTest.tests.unit.spec_tests.test_link_spec) 169s ---------------------------------------------------------------------- 169s ImportError: Failed to import test module: tests.unit.spec_tests.test_link_spec 169s Traceback (most recent call last): 169s File "/usr/lib/python3/dist-packages/numpy/core/__init__.py", line 24, in 169s from . import multiarray 169s File "/usr/lib/python3/dist-packages/numpy/core/multiarray.py", line 10, in 169s from . import overrides 169s File "/usr/lib/python3/dist-packages/numpy/core/overrides.py", line 8, in 169s from numpy.core._multiarray_umath import ( 169s add_docstring, _get_implementing_args, _ArrayFunctionDispatcher) 169s ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 169s 169s During handling of the above exception, another exception occurred: 169s 169s Traceback (most recent call last): 169s File "/usr/lib/python3/dist-packages/numpy/__init__.py", line 130, in 169s from numpy.__config__ import show as show_config 169s File "/usr/lib/python3/dist-packages/numpy/__config__.py", line 4, in 169s from numpy.core._multiarray_umath import ( 169s ...<3 lines>... 169s ) 169s File "/usr/lib/python3/dist-packages/numpy/core/__init__.py", line 50, in 169s raise ImportError(msg) 169s ImportError: 169s 169s IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 169s 169s Importing the numpy C-extensions failed. This error can happen for 169s many reasons, often due to issues with your setup or how NumPy was 169s installed. 169s 169s We have compiled some common reasons and troubleshooting tips at: 169s 169s https://numpy.org/devdocs/user/troubleshooting-importerror.html 169s 169s Please note and check the following: 169s 169s * The Python version is: Python3.13 from "/usr/bin/python3.13" 169s * The NumPy version is: "1.26.4" 169s 169s and make sure that they are the versions you expect. 169s Please carefully study the documentation linked above for further help. 169s 169s Original error was: No module named 'numpy.core._multiarray_umath' 169s 169s 169s The above exception was the direct cause of the following exception: 169s 169s Traceback (most recent call last): 169s File "/usr/lib/python3.13/unittest/loader.py", line 396, in _find_test_path 169s module = self._get_module_from_name(name) 169s File "/usr/lib/python3.13/unittest/loader.py", line 339, in _get_module_from_name 169s __import__(name) 169s ~~~~~~~~~~^^^^^^ 169s File "/tmp/autopkgtest.IFnIxF/autopkgtest_tmp/tests/unit/spec_tests/test_link_spec.py", line 3, in 169s from hdmf.spec import GroupSpec, LinkSpec 169s File "/usr/lib/python3/dist-packages/hdmf/__init__.py", line 1, in 169s from . import query 169s File "/usr/lib/python3/dist-packages/hdmf/query.py", line 3, in 169s import numpy as np 169s File "/usr/lib/python3/dist-packages/numpy/__init__.py", line 135, in 169s raise ImportError(msg) from e 169s ImportError: Error importing numpy: you should not try to import numpy from 169s its source directory; please exit the numpy source tree, and relaunch 169s your python interpreter from there. 169s 169s 169s ====================================================================== 169s ERROR: tests.unit.spec_tests.test_load_namespace (unittest.loader._FailedTest.tests.unit.spec_tests.test_load_namespace) 169s ---------------------------------------------------------------------- 169s ImportError: Failed to import test module: tests.unit.spec_tests.test_load_namespace 169s Traceback (most recent call last): 169s File "/usr/lib/python3/dist-packages/numpy/core/__init__.py", line 24, in 169s from . import multiarray 169s File "/usr/lib/python3/dist-packages/numpy/core/multiarray.py", line 10, in 169s from . import overrides 169s File "/usr/lib/python3/dist-packages/numpy/core/overrides.py", line 8, in 169s from numpy.core._multiarray_umath import ( 169s add_docstring, _get_implementing_args, _ArrayFunctionDispatcher) 169s ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 169s 169s During handling of the above exception, another exception occurred: 169s 169s Traceback (most recent call last): 169s File "/usr/lib/python3/dist-packages/numpy/__init__.py", line 130, in 169s from numpy.__config__ import show as show_config 169s File "/usr/lib/python3/dist-packages/numpy/__config__.py", line 4, in 169s from numpy.core._multiarray_umath import ( 169s ...<3 lines>... 169s ) 169s File "/usr/lib/python3/dist-packages/numpy/core/__init__.py", line 50, in 169s raise ImportError(msg) 169s ImportError: 169s 169s IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 169s 169s Importing the numpy C-extensions failed. This error can happen for 169s many reasons, often due to issues with your setup or how NumPy was 169s installed. 169s 169s We have compiled some common reasons and troubleshooting tips at: 169s 169s https://numpy.org/devdocs/user/troubleshooting-importerror.html 169s 169s Please note and check the following: 169s 169s * The Python version is: Python3.13 from "/usr/bin/python3.13" 169s * The NumPy version is: "1.26.4" 169s 169s and make sure that they are the versions you expect. 169s Please carefully study the documentation linked above for further help. 169s 169s Original error was: No module named 'numpy.core._multiarray_umath' 169s 169s 169s The above exception was the direct cause of the following exception: 169s 169s Traceback (most recent call last): 169s File "/usr/lib/python3.13/unittest/loader.py", line 396, in _find_test_path 169s module = self._get_module_from_name(name) 169s File "/usr/lib/python3.13/unittest/loader.py", line 339, in _get_module_from_name 169s __import__(name) 169s ~~~~~~~~~~^^^^^^ 169s File "/tmp/autopkgtest.IFnIxF/autopkgtest_tmp/tests/unit/spec_tests/test_load_namespace.py", line 7, in 169s from hdmf.common import get_type_map 169s File "/usr/lib/python3/dist-packages/hdmf/__init__.py", line 1, in 169s from . import query 169s File "/usr/lib/python3/dist-packages/hdmf/query.py", line 3, in 169s import numpy as np 169s File "/usr/lib/python3/dist-packages/numpy/__init__.py", line 135, in 169s raise ImportError(msg) from e 169s ImportError: Error importing numpy: you should not try to import numpy from 169s its source directory; please exit the numpy source tree, and relaunch 169s your python interpreter from there. 169s 169s 169s ====================================================================== 169s ERROR: tests.unit.spec_tests.test_ref_spec (unittest.loader._FailedTest.tests.unit.spec_tests.test_ref_spec) 169s ---------------------------------------------------------------------- 169s ImportError: Failed to import test module: tests.unit.spec_tests.test_ref_spec 169s Traceback (most recent call last): 169s File "/usr/lib/python3/dist-packages/numpy/core/__init__.py", line 24, in 169s from . import multiarray 169s File "/usr/lib/python3/dist-packages/numpy/core/multiarray.py", line 10, in 169s from . import overrides 169s File "/usr/lib/python3/dist-packages/numpy/core/overrides.py", line 8, in 169s from numpy.core._multiarray_umath import ( 169s add_docstring, _get_implementing_args, _ArrayFunctionDispatcher) 169s ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 169s 169s During handling of the above exception, another exception occurred: 169s 169s Traceback (most recent call last): 169s File "/usr/lib/python3/dist-packages/numpy/__init__.py", line 130, in 169s from numpy.__config__ import show as show_config 169s File "/usr/lib/python3/dist-packages/numpy/__config__.py", line 4, in 169s from numpy.core._multiarray_umath import ( 169s ...<3 lines>... 169s ) 169s File "/usr/lib/python3/dist-packages/numpy/core/__init__.py", line 50, in 169s raise ImportError(msg) 169s ImportError: 169s 169s IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 169s 169s Importing the numpy C-extensions failed. This error can happen for 169s many reasons, often due to issues with your setup or how NumPy was 169s installed. 169s 169s We have compiled some common reasons and troubleshooting tips at: 169s 169s https://numpy.org/devdocs/user/troubleshooting-importerror.html 169s 169s Please note and check the following: 169s 169s * The Python version is: Python3.13 from "/usr/bin/python3.13" 169s * The NumPy version is: "1.26.4" 169s 169s and make sure that they are the versions you expect. 169s Please carefully study the documentation linked above for further help. 169s 169s Original error was: No module named 'numpy.core._multiarray_umath' 169s 169s 169s The above exception was the direct cause of the following exception: 169s 169s Traceback (most recent call last): 169s File "/usr/lib/python3.13/unittest/loader.py", line 396, in _find_test_path 169s module = self._get_module_from_name(name) 169s File "/usr/lib/python3.13/unittest/loader.py", line 339, in _get_module_from_name 169s __import__(name) 169s ~~~~~~~~~~^^^^^^ 169s File "/tmp/autopkgtest.IFnIxF/autopkgtest_tmp/tests/unit/spec_tests/test_ref_spec.py", line 3, in 169s from hdmf.spec import RefSpec 169s File "/usr/lib/python3/dist-packages/hdmf/__init__.py", line 1, in 169s from . import query 169s File "/usr/lib/python3/dist-packages/hdmf/query.py", line 3, in 169s import numpy as np 169s File "/usr/lib/python3/dist-packages/numpy/__init__.py", line 135, in 169s raise ImportError(msg) from e 169s ImportError: Error importing numpy: you should not try to import numpy from 169s its source directory; please exit the numpy source tree, and relaunch 169s your python interpreter from there. 169s 169s 169s ====================================================================== 169s ERROR: tests.unit.spec_tests.test_spec_catalog (unittest.loader._FailedTest.tests.unit.spec_tests.test_spec_catalog) 169s ---------------------------------------------------------------------- 169s ImportError: Failed to import test module: tests.unit.spec_tests.test_spec_catalog 169s Traceback (most recent call last): 169s File "/usr/lib/python3/dist-packages/numpy/core/__init__.py", line 24, in 169s from . import multiarray 169s File "/usr/lib/python3/dist-packages/numpy/core/multiarray.py", line 10, in 169s from . import overrides 169s File "/usr/lib/python3/dist-packages/numpy/core/overrides.py", line 8, in 169s from numpy.core._multiarray_umath import ( 169s add_docstring, _get_implementing_args, _ArrayFunctionDispatcher) 169s ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 169s 169s During handling of the above exception, another exception occurred: 169s 169s Traceback (most recent call last): 169s File "/usr/lib/python3/dist-packages/numpy/__init__.py", line 130, in 169s from numpy.__config__ import show as show_config 169s File "/usr/lib/python3/dist-packages/numpy/__config__.py", line 4, in 169s from numpy.core._multiarray_umath import ( 169s ...<3 lines>... 169s ) 169s File "/usr/lib/python3/dist-packages/numpy/core/__init__.py", line 50, in 169s raise ImportError(msg) 169s ImportError: 169s 169s IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 169s 169s Importing the numpy C-extensions failed. This error can happen for 169s many reasons, often due to issues with your setup or how NumPy was 169s installed. 169s 169s We have compiled some common reasons and troubleshooting tips at: 169s 169s https://numpy.org/devdocs/user/troubleshooting-importerror.html 169s 169s Please note and check the following: 169s 169s * The Python version is: Python3.13 from "/usr/bin/python3.13" 169s * The NumPy version is: "1.26.4" 169s 169s and make sure that they are the versions you expect. 169s Please carefully study the documentation linked above for further help. 169s 169s Original error was: No module named 'numpy.core._multiarray_umath' 169s 169s 169s The above exception was the direct cause of the following exception: 169s 169s Traceback (most recent call last): 169s File "/usr/lib/python3.13/unittest/loader.py", line 396, in _find_test_path 169s module = self._get_module_from_name(name) 169s File "/usr/lib/python3.13/unittest/loader.py", line 339, in _get_module_from_name 169s __import__(name) 169s ~~~~~~~~~~^^^^^^ 169s File "/tmp/autopkgtest.IFnIxF/autopkgtest_tmp/tests/unit/spec_tests/test_spec_catalog.py", line 3, in 169s from hdmf.spec import GroupSpec, DatasetSpec, AttributeSpec, SpecCatalog 169s File "/usr/lib/python3/dist-packages/hdmf/__init__.py", line 1, in 169s from . import query 169s File "/usr/lib/python3/dist-packages/hdmf/query.py", line 3, in 169s import numpy as np 169s File "/usr/lib/python3/dist-packages/numpy/__init__.py", line 135, in 169s raise ImportError(msg) from e 169s ImportError: Error importing numpy: you should not try to import numpy from 169s its source directory; please exit the numpy source tree, and relaunch 169s your python interpreter from there. 169s 169s 169s ====================================================================== 169s ERROR: tests.unit.spec_tests.test_spec_write (unittest.loader._FailedTest.tests.unit.spec_tests.test_spec_write) 169s ---------------------------------------------------------------------- 169s ImportError: Failed to import test module: tests.unit.spec_tests.test_spec_write 169s Traceback (most recent call last): 169s File "/usr/lib/python3/dist-packages/numpy/core/__init__.py", line 24, in 169s from . import multiarray 169s File "/usr/lib/python3/dist-packages/numpy/core/multiarray.py", line 10, in 169s from . import overrides 169s File "/usr/lib/python3/dist-packages/numpy/core/overrides.py", line 8, in 169s from numpy.core._multiarray_umath import ( 169s add_docstring, _get_implementing_args, _ArrayFunctionDispatcher) 169s ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 169s 169s During handling of the above exception, another exception occurred: 169s 169s Traceback (most recent call last): 169s File "/usr/lib/python3/dist-packages/numpy/__init__.py", line 130, in 169s from numpy.__config__ import show as show_config 169s File "/usr/lib/python3/dist-packages/numpy/__config__.py", line 4, in 169s from numpy.core._multiarray_umath import ( 169s ...<3 lines>... 169s ) 169s File "/usr/lib/python3/dist-packages/numpy/core/__init__.py", line 50, in 169s raise ImportError(msg) 169s ImportError: 169s 169s IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 169s 169s Importing the numpy C-extensions failed. This error can happen for 169s many reasons, often due to issues with your setup or how NumPy was 169s installed. 169s 169s We have compiled some common reasons and troubleshooting tips at: 169s 169s https://numpy.org/devdocs/user/troubleshooting-importerror.html 169s 169s Please note and check the following: 169s 169s * The Python version is: Python3.13 from "/usr/bin/python3.13" 169s * The NumPy version is: "1.26.4" 169s 169s and make sure that they are the versions you expect. 169s Please carefully study the documentation linked above for further help. 169s 169s Original error was: No module named 'numpy.core._multiarray_umath' 169s 169s 169s The above exception was the direct cause of the following exception: 169s 169s Traceback (most recent call last): 169s File "/usr/lib/python3.13/unittest/loader.py", line 396, in _find_test_path 169s module = self._get_module_from_name(name) 169s File "/usr/lib/python3.13/unittest/loader.py", line 339, in _get_module_from_name 169s __import__(name) 169s ~~~~~~~~~~^^^^^^ 169s File "/tmp/autopkgtest.IFnIxF/autopkgtest_tmp/tests/unit/spec_tests/test_spec_write.py", line 4, in 169s from hdmf.spec.namespace import SpecNamespace, NamespaceCatalog 169s File "/usr/lib/python3/dist-packages/hdmf/__init__.py", line 1, in 169s from . import query 169s File "/usr/lib/python3/dist-packages/hdmf/query.py", line 3, in 169s import numpy as np 169s File "/usr/lib/python3/dist-packages/numpy/__init__.py", line 135, in 169s raise ImportError(msg) from e 169s ImportError: Error importing numpy: you should not try to import numpy from 169s its source directory; please exit the numpy source tree, and relaunch 169s your python interpreter from there. 169s 169s 169s ====================================================================== 169s ERROR: tests.unit.test_container (unittest.loader._FailedTest.tests.unit.test_container) 169s ---------------------------------------------------------------------- 169s ImportError: Failed to import test module: tests.unit.test_container 169s Traceback (most recent call last): 169s File "/usr/lib/python3/dist-packages/numpy/core/__init__.py", line 24, in 169s from . import multiarray 169s File "/usr/lib/python3/dist-packages/numpy/core/multiarray.py", line 10, in 169s from . import overrides 169s File "/usr/lib/python3/dist-packages/numpy/core/overrides.py", line 8, in 169s from numpy.core._multiarray_umath import ( 169s add_docstring, _get_implementing_args, _ArrayFunctionDispatcher) 169s ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 169s 169s During handling of the above exception, another exception occurred: 169s 169s Traceback (most recent call last): 169s File "/usr/lib/python3/dist-packages/numpy/__init__.py", line 130, in 169s from numpy.__config__ import show as show_config 169s File "/usr/lib/python3/dist-packages/numpy/__config__.py", line 4, in 169s from numpy.core._multiarray_umath import ( 169s ...<3 lines>... 169s ) 169s File "/usr/lib/python3/dist-packages/numpy/core/__init__.py", line 50, in 169s raise ImportError(msg) 169s ImportError: 169s 169s IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 169s 169s Importing the numpy C-extensions failed. This error can happen for 169s many reasons, often due to issues with your setup or how NumPy was 169s installed. 169s 169s We have compiled some common reasons and troubleshooting tips at: 169s 169s https://numpy.org/devdocs/user/troubleshooting-importerror.html 169s 169s Please note and check the following: 169s 169s * The Python version is: Python3.13 from "/usr/bin/python3.13" 169s * The NumPy version is: "1.26.4" 169s 169s and make sure that they are the versions you expect. 169s Please carefully study the documentation linked above for further help. 169s 169s Original error was: No module named 'numpy.core._multiarray_umath' 169s 169s 169s The above exception was the direct cause of the following exception: 169s 169s Traceback (most recent call last): 169s File "/usr/lib/python3.13/unittest/loader.py", line 396, in _find_test_path 169s module = self._get_module_from_name(name) 169s File "/usr/lib/python3.13/unittest/loader.py", line 339, in _get_module_from_name 169s __import__(name) 169s ~~~~~~~~~~^^^^^^ 169s File "/tmp/autopkgtest.IFnIxF/autopkgtest_tmp/tests/unit/test_container.py", line 1, in 169s import numpy as np 169s File "/usr/lib/python3/dist-packages/numpy/__init__.py", line 135, in 169s raise ImportError(msg) from e 169s ImportError: Error importing numpy: you should not try to import numpy from 169s its source directory; please exit the numpy source tree, and relaunch 169s your python interpreter from there. 169s 169s 169s ====================================================================== 169s ERROR: tests.unit.test_io_hdf5 (unittest.loader._FailedTest.tests.unit.test_io_hdf5) 169s ---------------------------------------------------------------------- 169s ImportError: Failed to import test module: tests.unit.test_io_hdf5 169s Traceback (most recent call last): 169s File "/usr/lib/python3/dist-packages/numpy/core/__init__.py", line 24, in 169s from . import multiarray 169s File "/usr/lib/python3/dist-packages/numpy/core/multiarray.py", line 10, in 169s from . import overrides 169s File "/usr/lib/python3/dist-packages/numpy/core/overrides.py", line 8, in 169s from numpy.core._multiarray_umath import ( 169s add_docstring, _get_implementing_args, _ArrayFunctionDispatcher) 169s ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 169s 169s During handling of the above exception, another exception occurred: 169s 169s Traceback (most recent call last): 169s File "/usr/lib/python3/dist-packages/numpy/__init__.py", line 130, in 169s from numpy.__config__ import show as show_config 169s File "/usr/lib/python3/dist-packages/numpy/__config__.py", line 4, in 169s from numpy.core._multiarray_umath import ( 169s ...<3 lines>... 169s ) 169s File "/usr/lib/python3/dist-packages/numpy/core/__init__.py", line 50, in 169s raise ImportError(msg) 169s ImportError: 169s 169s IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 169s 169s Importing the numpy C-extensions failed. This error can happen for 169s many reasons, often due to issues with your setup or how NumPy was 169s installed. 169s 169s We have compiled some common reasons and troubleshooting tips at: 169s 169s https://numpy.org/devdocs/user/troubleshooting-importerror.html 169s 169s Please note and check the following: 169s 169s * The Python version is: Python3.13 from "/usr/bin/python3.13" 169s * The NumPy version is: "1.26.4" 169s 169s and make sure that they are the versions you expect. 169s Please carefully study the documentation linked above for further help. 169s 169s Original error was: No module named 'numpy.core._multiarray_umath' 169s 169s 169s The above exception was the direct cause of the following exception: 169s 169s Traceback (most recent call last): 169s File "/usr/lib/python3.13/unittest/loader.py", line 396, in _find_test_path 169s module = self._get_module_from_name(name) 169s File "/usr/lib/python3.13/unittest/loader.py", line 339, in _get_module_from_name 169s __import__(name) 169s ~~~~~~~~~~^^^^^^ 169s File "/tmp/autopkgtest.IFnIxF/autopkgtest_tmp/tests/unit/test_io_hdf5.py", line 5, in 169s import numpy as np 169s File "/usr/lib/python3/dist-packages/numpy/__init__.py", line 135, in 169s raise ImportError(msg) from e 169s ImportError: Error importing numpy: you should not try to import numpy from 169s its source directory; please exit the numpy source tree, and relaunch 169s your python interpreter from there. 169s 169s 169s ====================================================================== 169s ERROR: tests.unit.test_io_hdf5_h5tools (unittest.loader._FailedTest.tests.unit.test_io_hdf5_h5tools) 169s ---------------------------------------------------------------------- 169s ImportError: Failed to import test module: tests.unit.test_io_hdf5_h5tools 169s Traceback (most recent call last): 169s File "/usr/lib/python3/dist-packages/h5py/__init__.py", line 24, in 169s from . import _debian_h5py_serial as _h5py 169s File "/usr/lib/python3/dist-packages/h5py/_debian_h5py_serial/__init__.py", line 25, in 169s from . import _errors 169s ImportError: cannot import name '_errors' from partially initialized module 'h5py._debian_h5py_serial' (most likely due to a circular import) (/usr/lib/python3/dist-packages/h5py/_debian_h5py_serial/__init__.py) 169s 169s During handling of the above exception, another exception occurred: 169s 169s Traceback (most recent call last): 169s File "/usr/lib/python3.13/unittest/loader.py", line 396, in _find_test_path 169s module = self._get_module_from_name(name) 169s File "/usr/lib/python3.13/unittest/loader.py", line 339, in _get_module_from_name 169s __import__(name) 169s ~~~~~~~~~~^^^^^^ 169s File "/tmp/autopkgtest.IFnIxF/autopkgtest_tmp/tests/unit/test_io_hdf5_h5tools.py", line 12, in 169s import h5py 169s File "/usr/lib/python3/dist-packages/h5py/__init__.py", line 26, in 169s from . import _debian_h5py_mpi as _h5py 169s ImportError: cannot import name '_debian_h5py_mpi' from partially initialized module 'h5py' (most likely due to a circular import) (/usr/lib/python3/dist-packages/h5py/__init__.py) 169s 169s 169s ====================================================================== 169s ERROR: tests.unit.test_io_hdf5_streaming (unittest.loader._FailedTest.tests.unit.test_io_hdf5_streaming) 169s ---------------------------------------------------------------------- 169s ImportError: Failed to import test module: tests.unit.test_io_hdf5_streaming 169s Traceback (most recent call last): 169s File "/usr/lib/python3/dist-packages/h5py/__init__.py", line 24, in 169s from . import _debian_h5py_serial as _h5py 169s File "/usr/lib/python3/dist-packages/h5py/_debian_h5py_serial/__init__.py", line 25, in 169s from . import _errors 169s ImportError: cannot import name '_errors' from partially initialized module 'h5py._debian_h5py_serial' (most likely due to a circular import) (/usr/lib/python3/dist-packages/h5py/_debian_h5py_serial/__init__.py) 169s 169s During handling of the above exception, another exception occurred: 169s 169s Traceback (most recent call last): 169s File "/usr/lib/python3.13/unittest/loader.py", line 396, in _find_test_path 169s module = self._get_module_from_name(name) 169s File "/usr/lib/python3.13/unittest/loader.py", line 339, in _get_module_from_name 169s __import__(name) 169s ~~~~~~~~~~^^^^^^ 169s File "/tmp/autopkgtest.IFnIxF/autopkgtest_tmp/tests/unit/test_io_hdf5_streaming.py", line 4, in 169s import h5py 169s File "/usr/lib/python3/dist-packages/h5py/__init__.py", line 26, in 169s from . import _debian_h5py_mpi as _h5py 169s ImportError: cannot import name '_debian_h5py_mpi' from partially initialized module 'h5py' (most likely due to a circular import) (/usr/lib/python3/dist-packages/h5py/__init__.py) 169s 169s 169s ====================================================================== 169s ERROR: tests.unit.test_multicontainerinterface (unittest.loader._FailedTest.tests.unit.test_multicontainerinterface) 169s ---------------------------------------------------------------------- 169s ImportError: Failed to import test module: tests.unit.test_multicontainerinterface 169s Traceback (most recent call last): 169s File "/usr/lib/python3/dist-packages/numpy/core/__init__.py", line 24, in 169s from . import multiarray 169s File "/usr/lib/python3/dist-packages/numpy/core/multiarray.py", line 10, in 169s from . import overrides 169s File "/usr/lib/python3/dist-packages/numpy/core/overrides.py", line 8, in 169s from numpy.core._multiarray_umath import ( 169s add_docstring, _get_implementing_args, _ArrayFunctionDispatcher) 169s ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 169s 169s During handling of the above exception, another exception occurred: 169s 169s Traceback (most recent call last): 169s File "/usr/lib/python3/dist-packages/numpy/__init__.py", line 130, in 169s from numpy.__config__ import show as show_config 169s File "/usr/lib/python3/dist-packages/numpy/__config__.py", line 4, in 169s from numpy.core._multiarray_umath import ( 169s ...<3 lines>... 169s ) 169s File "/usr/lib/python3/dist-packages/numpy/core/__init__.py", line 50, in 169s raise ImportError(msg) 169s ImportError: 169s 169s IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 169s 169s Importing the numpy C-extensions failed. This error can happen for 169s many reasons, often due to issues with your setup or how NumPy was 169s installed. 169s 169s We have compiled some common reasons and troubleshooting tips at: 169s 169s https://numpy.org/devdocs/user/troubleshooting-importerror.html 169s 169s Please note and check the following: 169s 169s * The Python version is: Python3.13 from "/usr/bin/python3.13" 169s * The NumPy version is: "1.26.4" 169s 169s and make sure that they are the versions you expect. 169s Please carefully study the documentation linked above for further help. 169s 169s Original error was: No module named 'numpy.core._multiarray_umath' 169s 169s 169s The above exception was the direct cause of the following exception: 169s 169s Traceback (most recent call last): 169s File "/usr/lib/python3.13/unittest/loader.py", line 396, in _find_test_path 169s module = self._get_module_from_name(name) 169s File "/usr/lib/python3.13/unittest/loader.py", line 339, in _get_module_from_name 169s __import__(name) 169s ~~~~~~~~~~^^^^^^ 169s File "/tmp/autopkgtest.IFnIxF/autopkgtest_tmp/tests/unit/test_multicontainerinterface.py", line 3, in 169s from hdmf.container import Container, Data, MultiContainerInterface 169s File "/usr/lib/python3/dist-packages/hdmf/__init__.py", line 1, in 169s from . import query 169s File "/usr/lib/python3/dist-packages/hdmf/query.py", line 3, in 169s import numpy as np 169s File "/usr/lib/python3/dist-packages/numpy/__init__.py", line 135, in 169s raise ImportError(msg) from e 169s ImportError: Error importing numpy: you should not try to import numpy from 169s its source directory; please exit the numpy source tree, and relaunch 169s your python interpreter from there. 169s 169s 169s ====================================================================== 169s ERROR: tests.unit.test_query (unittest.loader._FailedTest.tests.unit.test_query) 169s ---------------------------------------------------------------------- 169s ImportError: Failed to import test module: tests.unit.test_query 169s Traceback (most recent call last): 169s File "/usr/lib/python3/dist-packages/numpy/core/__init__.py", line 24, in 169s from . import multiarray 169s File "/usr/lib/python3/dist-packages/numpy/core/multiarray.py", line 10, in 169s from . import overrides 169s File "/usr/lib/python3/dist-packages/numpy/core/overrides.py", line 8, in 169s from numpy.core._multiarray_umath import ( 169s add_docstring, _get_implementing_args, _ArrayFunctionDispatcher) 169s ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 169s 169s During handling of the above exception, another exception occurred: 169s 169s Traceback (most recent call last): 169s File "/usr/lib/python3/dist-packages/numpy/__init__.py", line 130, in 169s from numpy.__config__ import show as show_config 169s File "/usr/lib/python3/dist-packages/numpy/__config__.py", line 4, in 169s from numpy.core._multiarray_umath import ( 169s ...<3 lines>... 169s ) 169s File "/usr/lib/python3/dist-packages/numpy/core/__init__.py", line 50, in 169s raise ImportError(msg) 169s ImportError: 169s 169s IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 169s 169s Importing the numpy C-extensions failed. This error can happen for 169s many reasons, often due to issues with your setup or how NumPy was 169s installed. 169s 169s We have compiled some common reasons and troubleshooting tips at: 169s 169s https://numpy.org/devdocs/user/troubleshooting-importerror.html 169s 169s Please note and check the following: 169s 169s * The Python version is: Python3.13 from "/usr/bin/python3.13" 169s * The NumPy version is: "1.26.4" 169s 169s and make sure that they are the versions you expect. 169s Please carefully study the documentation linked above for further help. 169s 169s Original error was: No module named 'numpy.core._multiarray_umath' 169s 169s 169s The above exception was the direct cause of the following exception: 169s 169s Traceback (most recent call last): 169s File "/usr/lib/python3.13/unittest/loader.py", line 396, in _find_test_path 169s module = self._get_module_from_name(name) 169s File "/usr/lib/python3.13/unittest/loader.py", line 339, in _get_module_from_name 169s __import__(name) 169s ~~~~~~~~~~^^^^^^ 169s File "/tmp/autopkgtest.IFnIxF/autopkgtest_tmp/tests/unit/test_query.py", line 4, in 169s import numpy as np 169s File "/usr/lib/python3/dist-packages/numpy/__init__.py", line 135, in 169s raise ImportError(msg) from e 169s ImportError: Error importing numpy: you should not try to import numpy from 169s its source directory; please exit the numpy source tree, and relaunch 169s your python interpreter from there. 169s 169s 169s ====================================================================== 169s ERROR: tests.unit.test_table (unittest.loader._FailedTest.tests.unit.test_table) 169s ---------------------------------------------------------------------- 169s ImportError: Failed to import test module: tests.unit.test_table 169s Traceback (most recent call last): 169s File "/usr/lib/python3.13/unittest/loader.py", line 396, in _find_test_path 169s module = self._get_module_from_name(name) 169s File "/usr/lib/python3.13/unittest/loader.py", line 339, in _get_module_from_name 169s __import__(name) 169s ~~~~~~~~~~^^^^^^ 169s File "/tmp/autopkgtest.IFnIxF/autopkgtest_tmp/tests/unit/test_table.py", line 1, in 169s import pandas as pd 169s File "/usr/lib/python3/dist-packages/pandas/__init__.py", line 19, in 169s raise ImportError( 169s "Unable to import required dependencies:\n" + "\n".join(_missing_dependencies) 169s ) 169s ImportError: Unable to import required dependencies: 169s numpy: Error importing numpy: you should not try to import numpy from 169s its source directory; please exit the numpy source tree, and relaunch 169s your python interpreter from there. 169s 169s 169s ====================================================================== 169s ERROR: tests.unit.test_term_set (unittest.loader._FailedTest.tests.unit.test_term_set) 169s ---------------------------------------------------------------------- 169s ImportError: Failed to import test module: tests.unit.test_term_set 169s Traceback (most recent call last): 169s File "/usr/lib/python3/dist-packages/numpy/core/__init__.py", line 24, in 169s from . import multiarray 169s File "/usr/lib/python3/dist-packages/numpy/core/multiarray.py", line 10, in 169s from . import overrides 169s File "/usr/lib/python3/dist-packages/numpy/core/overrides.py", line 8, in 169s from numpy.core._multiarray_umath import ( 169s add_docstring, _get_implementing_args, _ArrayFunctionDispatcher) 169s ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 169s 169s During handling of the above exception, another exception occurred: 169s 169s Traceback (most recent call last): 169s File "/usr/lib/python3/dist-packages/numpy/__init__.py", line 130, in 169s from numpy.__config__ import show as show_config 169s File "/usr/lib/python3/dist-packages/numpy/__config__.py", line 4, in 169s from numpy.core._multiarray_umath import ( 169s ...<3 lines>... 169s ) 169s File "/usr/lib/python3/dist-packages/numpy/core/__init__.py", line 50, in 169s raise ImportError(msg) 169s ImportError: 169s 169s IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 169s 169s Importing the numpy C-extensions failed. This error can happen for 169s many reasons, often due to issues with your setup or how NumPy was 169s installed. 169s 169s We have compiled some common reasons and troubleshooting tips at: 169s 169s https://numpy.org/devdocs/user/troubleshooting-importerror.html 169s 169s Please note and check the following: 169s 169s * The Python version is: Python3.13 from "/usr/bin/python3.13" 169s * The NumPy version is: "1.26.4" 169s 169s and make sure that they are the versions you expect. 169s Please carefully study the documentation linked above for further help. 169s 169s Original error was: No module named 'numpy.core._multiarray_umath' 169s 169s 169s The above exception was the direct cause of the following exception: 169s 169s Traceback (most recent call last): 169s File "/usr/lib/python3.13/unittest/loader.py", line 396, in _find_test_path 169s module = self._get_module_from_name(name) 169s File "/usr/lib/python3.13/unittest/loader.py", line 339, in _get_module_from_name 169s __import__(name) 169s ~~~~~~~~~~^^^^^^ 169s File "/tmp/autopkgtest.IFnIxF/autopkgtest_tmp/tests/unit/test_term_set.py", line 2, in 169s import numpy as np 169s File "/usr/lib/python3/dist-packages/numpy/__init__.py", line 135, in 169s raise ImportError(msg) from e 169s ImportError: Error importing numpy: you should not try to import numpy from 169s its source directory; please exit the numpy source tree, and relaunch 169s your python interpreter from there. 169s 169s 169s ====================================================================== 169s ERROR: tests.unit.utils_test.test_core_DataChunk (unittest.loader._FailedTest.tests.unit.utils_test.test_core_DataChunk) 169s ---------------------------------------------------------------------- 169s ImportError: Failed to import test module: tests.unit.utils_test.test_core_DataChunk 169s Traceback (most recent call last): 169s File "/usr/lib/python3/dist-packages/numpy/core/__init__.py", line 24, in 169s from . import multiarray 169s File "/usr/lib/python3/dist-packages/numpy/core/multiarray.py", line 10, in 169s from . import overrides 169s File "/usr/lib/python3/dist-packages/numpy/core/overrides.py", line 8, in 169s from numpy.core._multiarray_umath import ( 169s add_docstring, _get_implementing_args, _ArrayFunctionDispatcher) 169s ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 169s 169s During handling of the above exception, another exception occurred: 169s 169s Traceback (most recent call last): 169s File "/usr/lib/python3/dist-packages/numpy/__init__.py", line 130, in 169s from numpy.__config__ import show as show_config 169s File "/usr/lib/python3/dist-packages/numpy/__config__.py", line 4, in 169s from numpy.core._multiarray_umath import ( 169s ...<3 lines>... 169s ) 169s File "/usr/lib/python3/dist-packages/numpy/core/__init__.py", line 50, in 169s raise ImportError(msg) 169s ImportError: 169s 169s IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 169s 169s Importing the numpy C-extensions failed. This error can happen for 169s many reasons, often due to issues with your setup or how NumPy was 169s installed. 169s 169s We have compiled some common reasons and troubleshooting tips at: 169s 169s https://numpy.org/devdocs/user/troubleshooting-importerror.html 169s 169s Please note and check the following: 169s 169s * The Python version is: Python3.13 from "/usr/bin/python3.13" 169s * The NumPy version is: "1.26.4" 169s 169s and make sure that they are the versions you expect. 169s Please carefully study the documentation linked above for further help. 169s 169s Original error was: No module named 'numpy.core._multiarray_umath' 169s 169s 169s The above exception was the direct cause of the following exception: 169s 169s Traceback (most recent call last): 169s File "/usr/lib/python3.13/unittest/loader.py", line 396, in _find_test_path 169s module = self._get_module_from_name(name) 169s File "/usr/lib/python3.13/unittest/loader.py", line 339, in _get_module_from_name 169s __import__(name) 169s ~~~~~~~~~~^^^^^^ 169s File "/tmp/autopkgtest.IFnIxF/autopkgtest_tmp/tests/unit/utils_test/test_core_DataChunk.py", line 3, in 169s import numpy as np 169s File "/usr/lib/python3/dist-packages/numpy/__init__.py", line 135, in 169s raise ImportError(msg) from e 169s ImportError: Error importing numpy: you should not try to import numpy from 169s its source directory; please exit the numpy source tree, and relaunch 169s your python interpreter from there. 169s 169s 169s ====================================================================== 169s ERROR: tests.unit.utils_test.test_core_DataChunkIterator (unittest.loader._FailedTest.tests.unit.utils_test.test_core_DataChunkIterator) 169s ---------------------------------------------------------------------- 169s ImportError: Failed to import test module: tests.unit.utils_test.test_core_DataChunkIterator 169s Traceback (most recent call last): 169s File "/usr/lib/python3/dist-packages/numpy/core/__init__.py", line 24, in 169s from . import multiarray 169s File "/usr/lib/python3/dist-packages/numpy/core/multiarray.py", line 10, in 169s from . import overrides 169s File "/usr/lib/python3/dist-packages/numpy/core/overrides.py", line 8, in 169s from numpy.core._multiarray_umath import ( 169s add_docstring, _get_implementing_args, _ArrayFunctionDispatcher) 169s ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 169s 169s During handling of the above exception, another exception occurred: 169s 169s Traceback (most recent call last): 169s File "/usr/lib/python3/dist-packages/numpy/__init__.py", line 130, in 169s from numpy.__config__ import show as show_config 169s File "/usr/lib/python3/dist-packages/numpy/__config__.py", line 4, in 169s from numpy.core._multiarray_umath import ( 169s ...<3 lines>... 169s ) 169s File "/usr/lib/python3/dist-packages/numpy/core/__init__.py", line 50, in 169s raise ImportError(msg) 169s ImportError: 169s 169s IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 169s 169s Importing the numpy C-extensions failed. This error can happen for 169s many reasons, often due to issues with your setup or how NumPy was 169s installed. 169s 169s We have compiled some common reasons and troubleshooting tips at: 169s 169s https://numpy.org/devdocs/user/troubleshooting-importerror.html 169s 169s Please note and check the following: 169s 169s * The Python version is: Python3.13 from "/usr/bin/python3.13" 169s * The NumPy version is: "1.26.4" 169s 169s and make sure that they are the versions you expect. 169s Please carefully study the documentation linked above for further help. 169s 169s Original error was: No module named 'numpy.core._multiarray_umath' 169s 169s 169s The above exception was the direct cause of the following exception: 169s 169s Traceback (most recent call last): 169s File "/usr/lib/python3.13/unittest/loader.py", line 396, in _find_test_path 169s module = self._get_module_from_name(name) 169s File "/usr/lib/python3.13/unittest/loader.py", line 339, in _get_module_from_name 169s __import__(name) 169s ~~~~~~~~~~^^^^^^ 169s File "/tmp/autopkgtest.IFnIxF/autopkgtest_tmp/tests/unit/utils_test/test_core_DataChunkIterator.py", line 1, in 169s import numpy as np 169s File "/usr/lib/python3/dist-packages/numpy/__init__.py", line 135, in 169s raise ImportError(msg) from e 169s ImportError: Error importing numpy: you should not try to import numpy from 169s its source directory; please exit the numpy source tree, and relaunch 169s your python interpreter from there. 169s 169s 169s ====================================================================== 169s ERROR: tests.unit.utils_test.test_core_DataIO (unittest.loader._FailedTest.tests.unit.utils_test.test_core_DataIO) 169s ---------------------------------------------------------------------- 169s ImportError: Failed to import test module: tests.unit.utils_test.test_core_DataIO 169s Traceback (most recent call last): 169s File "/usr/lib/python3/dist-packages/numpy/core/__init__.py", line 24, in 169s from . import multiarray 169s File "/usr/lib/python3/dist-packages/numpy/core/multiarray.py", line 10, in 169s from . import overrides 169s File "/usr/lib/python3/dist-packages/numpy/core/overrides.py", line 8, in 169s from numpy.core._multiarray_umath import ( 169s add_docstring, _get_implementing_args, _ArrayFunctionDispatcher) 169s ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 169s 169s During handling of the above exception, another exception occurred: 169s 169s Traceback (most recent call last): 169s File "/usr/lib/python3/dist-packages/numpy/__init__.py", line 130, in 169s from numpy.__config__ import show as show_config 169s File "/usr/lib/python3/dist-packages/numpy/__config__.py", line 4, in 169s from numpy.core._multiarray_umath import ( 169s ...<3 lines>... 169s ) 169s File "/usr/lib/python3/dist-packages/numpy/core/__init__.py", line 50, in 169s raise ImportError(msg) 169s ImportError: 169s 169s IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 169s 169s Importing the numpy C-extensions failed. This error can happen for 169s many reasons, often due to issues with your setup or how NumPy was 169s installed. 169s 169s We have compiled some common reasons and troubleshooting tips at: 169s 169s https://numpy.org/devdocs/user/troubleshooting-importerror.html 169s 169s Please note and check the following: 169s 169s * The Python version is: Python3.13 from "/usr/bin/python3.13" 169s * The NumPy version is: "1.26.4" 169s 169s and make sure that they are the versions you expect. 169s Please carefully study the documentation linked above for further help. 169s 169s Original error was: No module named 'numpy.core._multiarray_umath' 169s 169s 169s The above exception was the direct cause of the following exception: 169s 169s Traceback (most recent call last): 169s File "/usr/lib/python3.13/unittest/loader.py", line 396, in _find_test_path 169s module = self._get_module_from_name(name) 169s File "/usr/lib/python3.13/unittest/loader.py", line 339, in _get_module_from_name 169s __import__(name) 169s ~~~~~~~~~~^^^^^^ 169s File "/tmp/autopkgtest.IFnIxF/autopkgtest_tmp/tests/unit/utils_test/test_core_DataIO.py", line 3, in 169s import numpy as np 169s File "/usr/lib/python3/dist-packages/numpy/__init__.py", line 135, in 169s raise ImportError(msg) from e 169s ImportError: Error importing numpy: you should not try to import numpy from 169s its source directory; please exit the numpy source tree, and relaunch 169s your python interpreter from there. 169s 169s 169s ====================================================================== 169s ERROR: tests.unit.utils_test.test_core_GenericDataChunkIterator (unittest.loader._FailedTest.tests.unit.utils_test.test_core_GenericDataChunkIterator) 169s ---------------------------------------------------------------------- 169s ImportError: Failed to import test module: tests.unit.utils_test.test_core_GenericDataChunkIterator 169s Traceback (most recent call last): 169s File "/usr/lib/python3/dist-packages/numpy/core/__init__.py", line 24, in 169s from . import multiarray 169s File "/usr/lib/python3/dist-packages/numpy/core/multiarray.py", line 10, in 169s from . import overrides 169s File "/usr/lib/python3/dist-packages/numpy/core/overrides.py", line 8, in 169s from numpy.core._multiarray_umath import ( 169s add_docstring, _get_implementing_args, _ArrayFunctionDispatcher) 169s ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 169s 169s During handling of the above exception, another exception occurred: 169s 169s Traceback (most recent call last): 169s File "/usr/lib/python3/dist-packages/numpy/__init__.py", line 130, in 169s from numpy.__config__ import show as show_config 169s File "/usr/lib/python3/dist-packages/numpy/__config__.py", line 4, in 169s from numpy.core._multiarray_umath import ( 169s ...<3 lines>... 169s ) 169s File "/usr/lib/python3/dist-packages/numpy/core/__init__.py", line 50, in 169s raise ImportError(msg) 169s ImportError: 169s 169s IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 169s 169s Importing the numpy C-extensions failed. This error can happen for 169s many reasons, often due to issues with your setup or how NumPy was 169s installed. 169s 169s We have compiled some common reasons and troubleshooting tips at: 169s 169s https://numpy.org/devdocs/user/troubleshooting-importerror.html 169s 169s Please note and check the following: 169s 169s * The Python version is: Python3.13 from "/usr/bin/python3.13" 169s * The NumPy version is: "1.26.4" 169s 169s and make sure that they are the versions you expect. 169s Please carefully study the documentation linked above for further help. 169s 169s Original error was: No module named 'numpy.core._multiarray_umath' 169s 169s 169s The above exception was the direct cause of the following exception: 169s 169s Traceback (most recent call last): 169s File "/usr/lib/python3.13/unittest/loader.py", line 396, in _find_test_path 169s module = self._get_module_from_name(name) 169s File "/usr/lib/python3.13/unittest/loader.py", line 339, in _get_module_from_name 169s __import__(name) 169s ~~~~~~~~~~^^^^^^ 169s File "/tmp/autopkgtest.IFnIxF/autopkgtest_tmp/tests/unit/utils_test/test_core_GenericDataChunkIterator.py", line 3, in 169s import numpy as np 169s File "/usr/lib/python3/dist-packages/numpy/__init__.py", line 135, in 169s raise ImportError(msg) from e 169s ImportError: Error importing numpy: you should not try to import numpy from 169s its source directory; please exit the numpy source tree, and relaunch 169s your python interpreter from there. 169s 169s 169s ====================================================================== 169s ERROR: tests.unit.utils_test.test_core_ShapeValidator (unittest.loader._FailedTest.tests.unit.utils_test.test_core_ShapeValidator) 169s ---------------------------------------------------------------------- 169s ImportError: Failed to import test module: tests.unit.utils_test.test_core_ShapeValidator 169s Traceback (most recent call last): 169s File "/usr/lib/python3/dist-packages/numpy/core/__init__.py", line 24, in 169s from . import multiarray 169s File "/usr/lib/python3/dist-packages/numpy/core/multiarray.py", line 10, in 169s from . import overrides 169s File "/usr/lib/python3/dist-packages/numpy/core/overrides.py", line 8, in 169s from numpy.core._multiarray_umath import ( 169s add_docstring, _get_implementing_args, _ArrayFunctionDispatcher) 169s ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 169s 169s During handling of the above exception, another exception occurred: 169s 169s Traceback (most recent call last): 169s File "/usr/lib/python3/dist-packages/numpy/__init__.py", line 130, in 169s from numpy.__config__ import show as show_config 169s File "/usr/lib/python3/dist-packages/numpy/__config__.py", line 4, in 169s from numpy.core._multiarray_umath import ( 169s ...<3 lines>... 169s ) 169s File "/usr/lib/python3/dist-packages/numpy/core/__init__.py", line 50, in 169s raise ImportError(msg) 169s ImportError: 169s 169s IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 169s 169s Importing the numpy C-extensions failed. This error can happen for 169s many reasons, often due to issues with your setup or how NumPy was 169s installed. 169s 169s We have compiled some common reasons and troubleshooting tips at: 169s 169s https://numpy.org/devdocs/user/troubleshooting-importerror.html 169s 169s Please note and check the following: 169s 169s * The Python version is: Python3.13 from "/usr/bin/python3.13" 169s * The NumPy version is: "1.26.4" 169s 169s and make sure that they are the versions you expect. 169s Please carefully study the documentation linked above for further help. 169s 169s Original error was: No module named 'numpy.core._multiarray_umath' 169s 169s 169s The above exception was the direct cause of the following exception: 169s 169s Traceback (most recent call last): 169s File "/usr/lib/python3.13/unittest/loader.py", line 396, in _find_test_path 169s module = self._get_module_from_name(name) 169s File "/usr/lib/python3.13/unittest/loader.py", line 339, in _get_module_from_name 169s __import__(name) 169s ~~~~~~~~~~^^^^^^ 169s File "/tmp/autopkgtest.IFnIxF/autopkgtest_tmp/tests/unit/utils_test/test_core_ShapeValidator.py", line 1, in 169s import numpy as np 169s File "/usr/lib/python3/dist-packages/numpy/__init__.py", line 135, in 169s raise ImportError(msg) from e 169s ImportError: Error importing numpy: you should not try to import numpy from 169s its source directory; please exit the numpy source tree, and relaunch 169s your python interpreter from there. 169s 169s 169s ====================================================================== 169s ERROR: tests.unit.utils_test.test_data_utils (unittest.loader._FailedTest.tests.unit.utils_test.test_data_utils) 169s ---------------------------------------------------------------------- 169s ImportError: Failed to import test module: tests.unit.utils_test.test_data_utils 169s Traceback (most recent call last): 169s File "/usr/lib/python3/dist-packages/numpy/core/__init__.py", line 24, in 169s from . import multiarray 169s File "/usr/lib/python3/dist-packages/numpy/core/multiarray.py", line 10, in 169s from . import overrides 169s File "/usr/lib/python3/dist-packages/numpy/core/overrides.py", line 8, in 169s from numpy.core._multiarray_umath import ( 169s add_docstring, _get_implementing_args, _ArrayFunctionDispatcher) 169s ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 169s 169s During handling of the above exception, another exception occurred: 169s 169s Traceback (most recent call last): 169s File "/usr/lib/python3/dist-packages/numpy/__init__.py", line 130, in 169s from numpy.__config__ import show as show_config 169s File "/usr/lib/python3/dist-packages/numpy/__config__.py", line 4, in 169s from numpy.core._multiarray_umath import ( 169s ...<3 lines>... 169s ) 169s File "/usr/lib/python3/dist-packages/numpy/core/__init__.py", line 50, in 169s raise ImportError(msg) 169s ImportError: 169s 169s IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 169s 169s Importing the numpy C-extensions failed. This error can happen for 169s many reasons, often due to issues with your setup or how NumPy was 169s installed. 169s 169s We have compiled some common reasons and troubleshooting tips at: 169s 169s https://numpy.org/devdocs/user/troubleshooting-importerror.html 169s 169s Please note and check the following: 169s 169s * The Python version is: Python3.13 from "/usr/bin/python3.13" 169s * The NumPy version is: "1.26.4" 169s 169s and make sure that they are the versions you expect. 169s Please carefully study the documentation linked above for further help. 169s 169s Original error was: No module named 'numpy.core._multiarray_umath' 169s 169s 169s The above exception was the direct cause of the following exception: 169s 169s Traceback (most recent call last): 169s File "/usr/lib/python3.13/unittest/loader.py", line 396, in _find_test_path 169s module = self._get_module_from_name(name) 169s File "/usr/lib/python3.13/unittest/loader.py", line 339, in _get_module_from_name 169s __import__(name) 169s ~~~~~~~~~~^^^^^^ 169s File "/tmp/autopkgtest.IFnIxF/autopkgtest_tmp/tests/unit/utils_test/test_data_utils.py", line 1, in 169s from hdmf.data_utils import append_data 169s File "/usr/lib/python3/dist-packages/hdmf/__init__.py", line 1, in 169s from . import query 169s File "/usr/lib/python3/dist-packages/hdmf/query.py", line 3, in 169s import numpy as np 169s File "/usr/lib/python3/dist-packages/numpy/__init__.py", line 135, in 169s raise ImportError(msg) from e 169s ImportError: Error importing numpy: you should not try to import numpy from 169s its source directory; please exit the numpy source tree, and relaunch 169s your python interpreter from there. 169s 169s 169s ====================================================================== 169s ERROR: tests.unit.utils_test.test_docval (unittest.loader._FailedTest.tests.unit.utils_test.test_docval) 169s ---------------------------------------------------------------------- 169s ImportError: Failed to import test module: tests.unit.utils_test.test_docval 169s Traceback (most recent call last): 169s File "/usr/lib/python3/dist-packages/numpy/core/__init__.py", line 24, in 169s from . import multiarray 169s File "/usr/lib/python3/dist-packages/numpy/core/multiarray.py", line 10, in 169s from . import overrides 169s File "/usr/lib/python3/dist-packages/numpy/core/overrides.py", line 8, in 169s from numpy.core._multiarray_umath import ( 169s add_docstring, _get_implementing_args, _ArrayFunctionDispatcher) 169s ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 169s 169s During handling of the above exception, another exception occurred: 169s 169s Traceback (most recent call last): 169s File "/usr/lib/python3/dist-packages/numpy/__init__.py", line 130, in 169s from numpy.__config__ import show as show_config 169s File "/usr/lib/python3/dist-packages/numpy/__config__.py", line 4, in 169s from numpy.core._multiarray_umath import ( 169s ...<3 lines>... 169s ) 169s File "/usr/lib/python3/dist-packages/numpy/core/__init__.py", line 50, in 169s raise ImportError(msg) 169s ImportError: 169s 169s IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 169s 169s Importing the numpy C-extensions failed. This error can happen for 169s many reasons, often due to issues with your setup or how NumPy was 169s installed. 169s 169s We have compiled some common reasons and troubleshooting tips at: 169s 169s https://numpy.org/devdocs/user/troubleshooting-importerror.html 169s 169s Please note and check the following: 169s 169s * The Python version is: Python3.13 from "/usr/bin/python3.13" 169s * The NumPy version is: "1.26.4" 169s 169s and make sure that they are the versions you expect. 169s Please carefully study the documentation linked above for further help. 169s 169s Original error was: No module named 'numpy.core._multiarray_umath' 169s 169s 169s The above exception was the direct cause of the following exception: 169s 169s Traceback (most recent call last): 169s File "/usr/lib/python3.13/unittest/loader.py", line 396, in _find_test_path 169s module = self._get_module_from_name(name) 169s File "/usr/lib/python3.13/unittest/loader.py", line 339, in _get_module_from_name 169s __import__(name) 169s ~~~~~~~~~~^^^^^^ 169s File "/tmp/autopkgtest.IFnIxF/autopkgtest_tmp/tests/unit/utils_test/test_docval.py", line 1, in 169s import numpy as np 169s File "/usr/lib/python3/dist-packages/numpy/__init__.py", line 135, in 169s raise ImportError(msg) from e 169s ImportError: Error importing numpy: you should not try to import numpy from 169s its source directory; please exit the numpy source tree, and relaunch 169s your python interpreter from there. 169s 169s 169s ====================================================================== 169s ERROR: tests.unit.utils_test.test_labelleddict (unittest.loader._FailedTest.tests.unit.utils_test.test_labelleddict) 169s ---------------------------------------------------------------------- 169s ImportError: Failed to import test module: tests.unit.utils_test.test_labelleddict 169s Traceback (most recent call last): 169s File "/usr/lib/python3/dist-packages/numpy/core/__init__.py", line 24, in 169s from . import multiarray 169s File "/usr/lib/python3/dist-packages/numpy/core/multiarray.py", line 10, in 169s from . import overrides 169s File "/usr/lib/python3/dist-packages/numpy/core/overrides.py", line 8, in 169s from numpy.core._multiarray_umath import ( 169s add_docstring, _get_implementing_args, _ArrayFunctionDispatcher) 169s ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 169s 169s During handling of the above exception, another exception occurred: 169s 169s Traceback (most recent call last): 169s File "/usr/lib/python3/dist-packages/numpy/__init__.py", line 130, in 169s from numpy.__config__ import show as show_config 169s File "/usr/lib/python3/dist-packages/numpy/__config__.py", line 4, in 169s from numpy.core._multiarray_umath import ( 169s ...<3 lines>... 169s ) 169s File "/usr/lib/python3/dist-packages/numpy/core/__init__.py", line 50, in 169s raise ImportError(msg) 169s ImportError: 169s 169s IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 169s 169s Importing the numpy C-extensions failed. This error can happen for 169s many reasons, often due to issues with your setup or how NumPy was 169s installed. 169s 169s We have compiled some common reasons and troubleshooting tips at: 169s 169s https://numpy.org/devdocs/user/troubleshooting-importerror.html 169s 169s Please note and check the following: 169s 169s * The Python version is: Python3.13 from "/usr/bin/python3.13" 169s * The NumPy version is: "1.26.4" 169s 169s and make sure that they are the versions you expect. 169s Please carefully study the documentation linked above for further help. 169s 169s Original error was: No module named 'numpy.core._multiarray_umath' 169s 169s 169s The above exception was the direct cause of the following exception: 169s 169s Traceback (most recent call last): 169s File "/usr/lib/python3.13/unittest/loader.py", line 396, in _find_test_path 169s module = self._get_module_from_name(name) 169s File "/usr/lib/python3.13/unittest/loader.py", line 339, in _get_module_from_name 169s __import__(name) 169s ~~~~~~~~~~^^^^^^ 169s File "/tmp/autopkgtest.IFnIxF/autopkgtest_tmp/tests/unit/utils_test/test_labelleddict.py", line 1, in 169s from hdmf.testing import TestCase 169s File "/usr/lib/python3/dist-packages/hdmf/__init__.py", line 1, in 169s from . import query 169s File "/usr/lib/python3/dist-packages/hdmf/query.py", line 3, in 169s import numpy as np 169s File "/usr/lib/python3/dist-packages/numpy/__init__.py", line 135, in 169s raise ImportError(msg) from e 169s ImportError: Error importing numpy: you should not try to import numpy from 169s its source directory; please exit the numpy source tree, and relaunch 169s your python interpreter from there. 169s 169s 169s ====================================================================== 169s ERROR: tests.unit.utils_test.test_utils (unittest.loader._FailedTest.tests.unit.utils_test.test_utils) 169s ---------------------------------------------------------------------- 169s ImportError: Failed to import test module: tests.unit.utils_test.test_utils 169s Traceback (most recent call last): 169s File "/usr/lib/python3/dist-packages/h5py/__init__.py", line 24, in 169s from . import _debian_h5py_serial as _h5py 169s File "/usr/lib/python3/dist-packages/h5py/_debian_h5py_serial/__init__.py", line 25, in 169s from . import _errors 169s ImportError: cannot import name '_errors' from partially initialized module 'h5py._debian_h5py_serial' (most likely due to a circular import) (/usr/lib/python3/dist-packages/h5py/_debian_h5py_serial/__init__.py) 169s 169s During handling of the above exception, another exception occurred: 169s 169s Traceback (most recent call last): 169s File "/usr/lib/python3.13/unittest/loader.py", line 396, in _find_test_path 169s module = self._get_module_from_name(name) 169s File "/usr/lib/python3.13/unittest/loader.py", line 339, in _get_module_from_name 169s __import__(name) 169s ~~~~~~~~~~^^^^^^ 169s File "/tmp/autopkgtest.IFnIxF/autopkgtest_tmp/tests/unit/utils_test/test_utils.py", line 3, in 169s import h5py 169s File "/usr/lib/python3/dist-packages/h5py/__init__.py", line 26, in 169s from . import _debian_h5py_mpi as _h5py 169s ImportError: cannot import name '_debian_h5py_mpi' from partially initialized module 'h5py' (most likely due to a circular import) (/usr/lib/python3/dist-packages/h5py/__init__.py) 169s 169s 169s ====================================================================== 169s ERROR: tests.unit.validator_tests.test_errors (unittest.loader._FailedTest.tests.unit.validator_tests.test_errors) 169s ---------------------------------------------------------------------- 169s ImportError: Failed to import test module: tests.unit.validator_tests.test_errors 169s Traceback (most recent call last): 169s File "/usr/lib/python3/dist-packages/numpy/core/__init__.py", line 24, in 169s from . import multiarray 169s File "/usr/lib/python3/dist-packages/numpy/core/multiarray.py", line 10, in 169s from . import overrides 169s File "/usr/lib/python3/dist-packages/numpy/core/overrides.py", line 8, in 169s from numpy.core._multiarray_umath import ( 169s add_docstring, _get_implementing_args, _ArrayFunctionDispatcher) 169s ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 169s 169s During handling of the above exception, another exception occurred: 169s 169s Traceback (most recent call last): 169s File "/usr/lib/python3/dist-packages/numpy/__init__.py", line 130, in 169s from numpy.__config__ import show as show_config 169s File "/usr/lib/python3/dist-packages/numpy/__config__.py", line 4, in 169s from numpy.core._multiarray_umath import ( 169s ...<3 lines>... 169s ) 169s File "/usr/lib/python3/dist-packages/numpy/core/__init__.py", line 50, in 169s raise ImportError(msg) 169s ImportError: 169s 169s IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 169s 169s Importing the numpy C-extensions failed. This error can happen for 169s many reasons, often due to issues with your setup or how NumPy was 169s installed. 169s 169s We have compiled some common reasons and troubleshooting tips at: 169s 169s https://numpy.org/devdocs/user/troubleshooting-importerror.html 169s 169s Please note and check the following: 169s 169s * The Python version is: Python3.13 from "/usr/bin/python3.13" 169s * The NumPy version is: "1.26.4" 169s 169s and make sure that they are the versions you expect. 169s Please carefully study the documentation linked above for further help. 169s 169s Original error was: No module named 'numpy.core._multiarray_umath' 169s 169s 169s The above exception was the direct cause of the following exception: 169s 169s Traceback (most recent call last): 169s File "/usr/lib/python3.13/unittest/loader.py", line 396, in _find_test_path 169s module = self._get_module_from_name(name) 169s File "/usr/lib/python3.13/unittest/loader.py", line 339, in _get_module_from_name 169s __import__(name) 169s ~~~~~~~~~~^^^^^^ 169s File "/tmp/autopkgtest.IFnIxF/autopkgtest_tmp/tests/unit/validator_tests/test_errors.py", line 3, in 169s from hdmf.validate.errors import Error 169s File "/usr/lib/python3/dist-packages/hdmf/__init__.py", line 1, in 169s from . import query 169s File "/usr/lib/python3/dist-packages/hdmf/query.py", line 3, in 169s import numpy as np 169s File "/usr/lib/python3/dist-packages/numpy/__init__.py", line 135, in 169s raise ImportError(msg) from e 169s ImportError: Error importing numpy: you should not try to import numpy from 169s its source directory; please exit the numpy source tree, and relaunch 169s your python interpreter from there. 169s 169s 169s ====================================================================== 169s ERROR: tests.unit.validator_tests.test_validate (unittest.loader._FailedTest.tests.unit.validator_tests.test_validate) 169s ---------------------------------------------------------------------- 169s ImportError: Failed to import test module: tests.unit.validator_tests.test_validate 169s Traceback (most recent call last): 169s File "/usr/lib/python3/dist-packages/numpy/core/__init__.py", line 24, in 169s from . import multiarray 169s File "/usr/lib/python3/dist-packages/numpy/core/multiarray.py", line 10, in 169s from . import overrides 169s File "/usr/lib/python3/dist-packages/numpy/core/overrides.py", line 8, in 169s from numpy.core._multiarray_umath import ( 169s add_docstring, _get_implementing_args, _ArrayFunctionDispatcher) 169s ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 169s 169s During handling of the above exception, another exception occurred: 169s 169s Traceback (most recent call last): 169s File "/usr/lib/python3/dist-packages/numpy/__init__.py", line 130, in 169s from numpy.__config__ import show as show_config 169s File "/usr/lib/python3/dist-packages/numpy/__config__.py", line 4, in 169s from numpy.core._multiarray_umath import ( 169s ...<3 lines>... 169s ) 169s File "/usr/lib/python3/dist-packages/numpy/core/__init__.py", line 50, in 169s raise ImportError(msg) 169s ImportError: 169s 169s IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 169s 169s Importing the numpy C-extensions failed. This error can happen for 169s many reasons, often due to issues with your setup or how NumPy was 169s installed. 169s 169s We have compiled some common reasons and troubleshooting tips at: 169s 169s https://numpy.org/devdocs/user/troubleshooting-importerror.html 169s 169s Please note and check the following: 169s 169s * The Python version is: Python3.13 from "/usr/bin/python3.13" 169s * The NumPy version is: "1.26.4" 169s 169s and make sure that they are the versions you expect. 169s Please carefully study the documentation linked above for further help. 169s 169s Original error was: No module named 'numpy.core._multiarray_umath' 169s 169s 169s The above exception was the direct cause of the following exception: 169s 169s Traceback (most recent call last): 169s File "/usr/lib/python3.13/unittest/loader.py", line 396, in _find_test_path 169s module = self._get_module_from_name(name) 169s File "/usr/lib/python3.13/unittest/loader.py", line 339, in _get_module_from_name 169s __import__(name) 169s ~~~~~~~~~~^^^^^^ 169s File "/tmp/autopkgtest.IFnIxF/autopkgtest_tmp/tests/unit/validator_tests/test_validate.py", line 5, in 169s import numpy as np 169s File "/usr/lib/python3/dist-packages/numpy/__init__.py", line 135, in 169s raise ImportError(msg) from e 169s ImportError: Error importing numpy: you should not try to import numpy from 169s its source directory; please exit the numpy source tree, and relaunch 169s your python interpreter from there. 169s 169s 169s ---------------------------------------------------------------------- 169s Ran 47 tests in 0.003s 169s 169s FAILED (errors=47) 169s autopkgtest [11:30:00]: test run-unit-test: -----------------------] 170s autopkgtest [11:30:01]: test run-unit-test: - - - - - - - - - - results - - - - - - - - - - 170s run-unit-test FAIL non-zero exit status 1 170s autopkgtest [11:30:01]: test autodep8-python3: preparing testbed 172s Reading package lists... 172s Building dependency tree... 172s Reading state information... 172s Starting pkgProblemResolver with broken count: 0 172s Starting 2 pkgProblemResolver with broken count: 0 172s Done 172s The following NEW packages will be installed: 172s autopkgtest-satdep 172s 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. 172s Need to get 0 B/716 B of archives. 172s After this operation, 0 B of additional disk space will be used. 172s Get:1 /tmp/autopkgtest.IFnIxF/2-autopkgtest-satdep.deb autopkgtest-satdep s390x 0 [716 B] 172s Selecting previously unselected package autopkgtest-satdep. 172s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 60731 files and directories currently installed.) 172s Preparing to unpack .../2-autopkgtest-satdep.deb ... 172s Unpacking autopkgtest-satdep (0) ... 172s Setting up autopkgtest-satdep (0) ... 174s (Reading database ... 60731 files and directories currently installed.) 174s Removing autopkgtest-satdep (0) ... 175s autopkgtest [11:30:06]: test autodep8-python3: set -e ; for py in $(py3versions -r 2>/dev/null) ; do cd "$AUTOPKGTEST_TMP" ; echo "Testing with $py:" ; $py -c "import hdmf; print(hdmf)" ; done 175s autopkgtest [11:30:06]: test autodep8-python3: [----------------------- 175s Testing with python3.13: 175s Traceback (most recent call last): 175s File "/usr/lib/python3/dist-packages/numpy/core/__init__.py", line 24, in 175s from . import multiarray 175s File "/usr/lib/python3/dist-packages/numpy/core/multiarray.py", line 10, in 175s from . import overrides 175s File "/usr/lib/python3/dist-packages/numpy/core/overrides.py", line 8, in 175s from numpy.core._multiarray_umath import ( 175s add_docstring, _get_implementing_args, _ArrayFunctionDispatcher) 175s ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 175s 175s During handling of the above exception, another exception occurred: 175s 175s Traceback (most recent call last): 175s File "/usr/lib/python3/dist-packages/numpy/__init__.py", line 130, in 175s from numpy.__config__ import show as show_config 175s File "/usr/lib/python3/dist-packages/numpy/__config__.py", line 4, in 175s from numpy.core._multiarray_umath import ( 175s ...<3 lines>... 175s ) 175s File "/usr/lib/python3/dist-packages/numpy/core/__init__.py", line 50, in 175s raise ImportError(msg) 175s ImportError: 175s 175s IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 175s 175s Importing the numpy C-extensions failed. This error can happen for 175s many reasons, often due to issues with your setup or how NumPy was 175s installed. 175s 175s We have compiled some common reasons and troubleshooting tips at: 175s 175s https://numpy.org/devdocs/user/troubleshooting-importerror.html 175s 175s Please note and check the following: 175s 175s * The Python version is: Python3.13 from "/usr/bin/python3.13" 175s * The NumPy version is: "1.26.4" 175s 175s and make sure that they are the versions you expect. 175s Please carefully study the documentation linked above for further help. 175s 175s Original error was: No module named 'numpy.core._multiarray_umath' 175s 175s 175s The above exception was the direct cause of the following exception: 175s 175s Traceback (most recent call last): 175s File "", line 1, in 175s import hdmf; print(hdmf) 175s ^^^^^^^^^^^ 175s File "/usr/lib/python3/dist-packages/hdmf/__init__.py", line 1, in 175s from . import query 175s File "/usr/lib/python3/dist-packages/hdmf/query.py", line 3, in 175s import numpy as np 175s File "/usr/lib/python3/dist-packages/numpy/__init__.py", line 135, in 175s raise ImportError(msg) from e 175s ImportError: Error importing numpy: you should not try to import numpy from 175s its source directory; please exit the numpy source tree, and relaunch 175s your python interpreter from there. 175s autopkgtest [11:30:06]: test autodep8-python3: -----------------------] 176s autopkgtest [11:30:07]: test autodep8-python3: - - - - - - - - - - results - - - - - - - - - - 176s autodep8-python3 FAIL non-zero exit status 1 176s autopkgtest [11:30:07]: @@@@@@@@@@@@@@@@@@@@ summary 176s run-unit-test FAIL non-zero exit status 1 176s autodep8-python3 FAIL non-zero exit status 1 190s virt: nova [W] Using flock in prodstack6-s390x 190s virt: flock: timeout while waiting to get lock 190s virt: Creating nova instance adt-plucky-s390x-hdmf-20241113-112711-juju-7f2275-prod-proposed-migration-environment-2-8f99c7af-933a-42c7-8505-a66d08a082e1 from image adt/ubuntu-plucky-s390x-server-20241113.img (UUID e740277e-1f72-40ae-bfbe-46030537c71c)...