0s autopkgtest [07:35:13]: starting date and time: 2024-11-15 07:35:13+0000
  0s autopkgtest [07:35:13]: git checkout: 6f3be7a8 Fix armhf LXD image generation for plucky
  0s autopkgtest [07:35:13]: host juju-7f2275-prod-proposed-migration-environment-15; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.46gk170l/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:gudhi --apt-upgrade gudhi --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=gudhi/3.10.1+dfsg-2build1 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest-s390x --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-15@bos03-s390x-30.secgroup --name adt-plucky-s390x-gudhi-20241115-073513-juju-7f2275-prod-proposed-migration-environment-15-f9d2df32-882d-478e-881f-def457e893be --image adt/ubuntu-plucky-s390x-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-15 --net-id=net_prod-proposed-migration-s390x -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,keyserver.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/
 48s autopkgtest [07:36:01]: testbed dpkg architecture: s390x
 48s autopkgtest [07:36:01]: testbed apt version: 2.9.8
 48s autopkgtest [07:36:01]: @@@@@@@@@@@@@@@@@@@@ test bed setup
 49s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease [73.9 kB]
 49s Get:2 http://ftpmaster.internal/ubuntu plucky-proposed/restricted Sources [7016 B]
 50s Get:3 http://ftpmaster.internal/ubuntu plucky-proposed/universe Sources [1061 kB]
 50s Get:4 http://ftpmaster.internal/ubuntu plucky-proposed/main Sources [95.8 kB]
 50s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse Sources [16.1 kB]
 50s Get:6 http://ftpmaster.internal/ubuntu plucky-proposed/main s390x Packages [151 kB]
 50s Get:7 http://ftpmaster.internal/ubuntu plucky-proposed/universe s390x Packages [761 kB]
 50s Get:8 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse s390x Packages [5208 B]
 50s Fetched 2171 kB in 1s (2654 kB/s)
 50s Reading package lists...
 52s Reading package lists...
 52s Building dependency tree...
 52s Reading state information...
 52s Calculating upgrade...
 52s The following packages will be upgraded:
 52s   libcap-ng0 libexpat1 lxd-installer man-db pastebinit python3-systemd
 52s   xfsprogs
 52s 7 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
 52s Need to get 2461 kB of archives.
 52s After this operation, 166 kB of additional disk space will be used.
 52s Get:1 http://ftpmaster.internal/ubuntu plucky/main s390x libcap-ng0 s390x 0.8.5-3build1 [15.9 kB]
 53s Get:2 http://ftpmaster.internal/ubuntu plucky/main s390x libexpat1 s390x 2.6.4-1 [93.3 kB]
 53s Get:3 http://ftpmaster.internal/ubuntu plucky/main s390x man-db s390x 2.13.0-1 [1337 kB]
 53s Get:4 http://ftpmaster.internal/ubuntu plucky/main s390x lxd-installer all 9 [5084 B]
 53s Get:5 http://ftpmaster.internal/ubuntu plucky/main s390x pastebinit all 1.7.1-1 [14.9 kB]
 53s Get:6 http://ftpmaster.internal/ubuntu plucky/main s390x python3-systemd s390x 235-1build5 [46.9 kB]
 53s Get:7 http://ftpmaster.internal/ubuntu plucky/main s390x xfsprogs s390x 6.8.0-2.2ubuntu2 [948 kB]
 53s Preconfiguring packages ...
 53s Fetched 2461 kB in 1s (3554 kB/s)
 53s (Reading database ... 
(Reading database ... 5%
(Reading database ... 10%
(Reading database ... 15%
(Reading database ... 20%
(Reading database ... 25%
(Reading database ... 30%
(Reading database ... 35%
(Reading database ... 40%
(Reading database ... 45%
(Reading database ... 50%
(Reading database ... 55%
(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 55511 files and directories currently installed.)
 53s Preparing to unpack .../libcap-ng0_0.8.5-3build1_s390x.deb ...
 53s Unpacking libcap-ng0:s390x (0.8.5-3build1) over (0.8.5-1) ...
 53s Setting up libcap-ng0:s390x (0.8.5-3build1) ...
 53s (Reading database ... 
(Reading database ... 5%
(Reading database ... 10%
(Reading database ... 15%
(Reading database ... 20%
(Reading database ... 25%
(Reading database ... 30%
(Reading database ... 35%
(Reading database ... 40%
(Reading database ... 45%
(Reading database ... 50%
(Reading database ... 55%
(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 55511 files and directories currently installed.)
 53s Preparing to unpack .../0-libexpat1_2.6.4-1_s390x.deb ...
 53s Unpacking libexpat1:s390x (2.6.4-1) over (2.6.2-2) ...
 53s Preparing to unpack .../1-man-db_2.13.0-1_s390x.deb ...
 53s Unpacking man-db (2.13.0-1) over (2.12.1-3) ...
 54s Preparing to unpack .../2-lxd-installer_9_all.deb ...
 54s Unpacking lxd-installer (9) over (8) ...
 54s Preparing to unpack .../3-pastebinit_1.7.1-1_all.deb ...
 54s Unpacking pastebinit (1.7.1-1) over (1.7.0-1) ...
 54s Preparing to unpack .../4-python3-systemd_235-1build5_s390x.deb ...
 54s Unpacking python3-systemd (235-1build5) over (235-1build4) ...
 54s Preparing to unpack .../5-xfsprogs_6.8.0-2.2ubuntu2_s390x.deb ...
 54s Unpacking xfsprogs (6.8.0-2.2ubuntu2) over (6.8.0-2.2ubuntu1) ...
 54s Setting up libexpat1:s390x (2.6.4-1) ...
 54s Setting up pastebinit (1.7.1-1) ...
 54s Setting up man-db (2.13.0-1) ...
 54s Updating database of manual pages ...
 55s man-db.service is a disabled or a static unit not running, not starting it.
 55s Setting up xfsprogs (6.8.0-2.2ubuntu2) ...
 55s update-initramfs: deferring update (trigger activated)
 55s Setting up lxd-installer (9) ...
 56s Setting up python3-systemd (235-1build5) ...
 56s Processing triggers for libc-bin (2.40-1ubuntu3) ...
 56s Processing triggers for initramfs-tools (0.142ubuntu34) ...
 56s update-initramfs: Generating /boot/initrd.img-6.11.0-8-generic
 56s W: No lz4 in /usr/bin:/sbin:/bin, using gzip
 58s Using config file '/etc/zipl.conf'
 58s Building bootmap in '/boot'
 58s Adding IPL section 'ubuntu' (default)
 58s Preparing boot device for LD-IPL: vda (0000).
 58s Done.
 58s Reading package lists...
 58s Building dependency tree...
 58s Reading state information...
 58s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
 58s Hit:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease
 59s Hit:2 http://ftpmaster.internal/ubuntu plucky InRelease
 59s Hit:3 http://ftpmaster.internal/ubuntu plucky-updates InRelease
 59s Hit:4 http://ftpmaster.internal/ubuntu plucky-security InRelease
 59s Reading package lists...
 59s Reading package lists...
 59s Building dependency tree...
 59s Reading state information...
 60s Calculating upgrade...
 60s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
 60s Reading package lists...
 60s Building dependency tree...
 60s Reading state information...
 60s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
 60s autopkgtest [07:36:13]: rebooting testbed after setup commands that affected boot
 79s autopkgtest [07:36:32]: testbed running kernel: Linux 6.11.0-8-generic #8-Ubuntu SMP Mon Sep 16 12:49:35 UTC 2024
 82s autopkgtest [07:36:35]: @@@@@@@@@@@@@@@@@@@@ apt-source gudhi
 86s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed/universe gudhi 3.10.1+dfsg-2build1 (dsc) [3091 B]
 86s Get:2 http://ftpmaster.internal/ubuntu plucky-proposed/universe gudhi 3.10.1+dfsg-2build1 (tar) [17.8 MB]
 86s Get:3 http://ftpmaster.internal/ubuntu plucky-proposed/universe gudhi 3.10.1+dfsg-2build1 (diff) [11.8 kB]
 86s gpgv: Signature made Fri Nov 15 03:39:28 2024 UTC
 86s gpgv:                using RSA key 568BF22A66337CBFC9A6B9B72C83DBC8E9BD0E37
 86s gpgv: Can't check signature: No public key
 86s dpkg-source: warning: cannot verify inline signature for ./gudhi_3.10.1+dfsg-2build1.dsc: no acceptable signature found
 87s autopkgtest [07:36:40]: testing package gudhi version 3.10.1+dfsg-2build1
 88s autopkgtest [07:36:41]: build not needed
 91s autopkgtest [07:36:44]: test python-upstream.sh: preparing testbed
 92s Reading package lists...
 92s Building dependency tree...
 92s Reading state information...
 93s Starting pkgProblemResolver with broken count: 0
 93s Starting 2 pkgProblemResolver with broken count: 0
 93s Done
 93s The following additional packages will be installed:
 93s   blt fontconfig-config fonts-dejavu-core fonts-dejavu-mono fonts-lyx libblas3
 93s   libdeflate0 libfontconfig1 libfreetype6 libgfortran5 libgomp1 libgraphite2-3
 93s   libharfbuzz0b libhwloc15 libimagequant0 libjbig0 libjpeg-turbo8 libjpeg8
 93s   libjs-jquery libjs-jquery-ui liblapack3 liblbfgsb0 liblcms2-2 libopenjp2-7
 93s   libqhull-r8.0 libraqm0 libsharpyuv0 libtbb12 libtbbbind-2-5 libtbbmalloc2
 93s   libtcl8.6 libtiff6 libtk8.6 libwebp7 libwebpdemux2 libwebpmux3 libxft2
 93s   libxrender1 libxslt1.1 libxss1 python-matplotlib-data python3-all
 93s   python3-appdirs python3-brotli python3-contourpy python3-cycler
 93s   python3-dateutil python3-decorator python3-eagerpy python3-fonttools
 93s   python3-fs python3-gudhi python3-iniconfig python3-joblib python3-kiwisolver
 93s   python3-lxml python3-lz4 python3-matplotlib python3-mpmath python3-numpy
 93s   python3-packaging python3-pil python3-pil.imagetk python3-pluggy python3-pot
 93s   python3-pytest python3-scipy python3-six python3-sklearn python3-sklearn-lib
 93s   python3-sympy python3-threadpoolctl python3-tk python3-tz python3-ufolib2
 93s   python3.12-tk tk8.6-blt2.5 unicode-data x11-common
 93s Suggested packages:
 93s   blt-demo libjs-jquery-ui-docs liblcms2-utils tcl8.6 tk8.6 python-cycler-doc
 93s   python3-torch python-joblib-doc python-lxml-doc cm-super-minimal dvipng
 93s   ffmpeg fonts-staypuft ghostscript gir1.2-gtk-3.0 inkscape ipython3
 93s   librsvg2-common python-matplotlib-doc python3-cairocffi python3-gi-cairo
 93s   python3-gobject python3-pyqt5 python3-sip python3-tornado
 93s   texlive-extra-utils texlive-latex-extra python-mpmath-doc python3-gmpy2 gcc
 93s   gfortran python-numpy-doc python3-dev python-pil-doc python-scipy-doc
 93s   python3-dap python-sklearn-doc texlive-fonts-extra python-sympy-doc tix
 93s   python3-tk-dbg python3.13-tk
 93s Recommended packages:
 93s   libhwloc-plugins javascript-common python3-simplejson python3-psutil
 93s   python3-bs4 python3-cssselect python3-html5lib python3-olefile g++
 93s   | c++-compiler isympy-common
 93s The following NEW packages will be installed:
 93s   autopkgtest-satdep blt fontconfig-config fonts-dejavu-core fonts-dejavu-mono
 93s   fonts-lyx libblas3 libdeflate0 libfontconfig1 libfreetype6 libgfortran5
 93s   libgomp1 libgraphite2-3 libharfbuzz0b libhwloc15 libimagequant0 libjbig0
 93s   libjpeg-turbo8 libjpeg8 libjs-jquery libjs-jquery-ui liblapack3 liblbfgsb0
 93s   liblcms2-2 libopenjp2-7 libqhull-r8.0 libraqm0 libsharpyuv0 libtbb12
 93s   libtbbbind-2-5 libtbbmalloc2 libtcl8.6 libtiff6 libtk8.6 libwebp7
 93s   libwebpdemux2 libwebpmux3 libxft2 libxrender1 libxslt1.1 libxss1
 93s   python-matplotlib-data python3-all python3-appdirs python3-brotli
 93s   python3-contourpy python3-cycler python3-dateutil python3-decorator
 93s   python3-eagerpy python3-fonttools python3-fs python3-gudhi python3-iniconfig
 93s   python3-joblib python3-kiwisolver python3-lxml python3-lz4
 93s   python3-matplotlib python3-mpmath python3-numpy python3-packaging
 93s   python3-pil python3-pil.imagetk python3-pluggy python3-pot python3-pytest
 93s   python3-scipy python3-six python3-sklearn python3-sklearn-lib python3-sympy
 93s   python3-threadpoolctl python3-tk python3-tz python3-ufolib2 python3.12-tk
 93s   tk8.6-blt2.5 unicode-data x11-common
 93s 0 upgraded, 80 newly installed, 0 to remove and 0 not upgraded.
 93s Need to get 68.9 MB/68.9 MB of archives.
 93s After this operation, 298 MB of additional disk space will be used.
 93s Get:1 /tmp/autopkgtest.WOBQJJ/1-autopkgtest-satdep.deb autopkgtest-satdep s390x 0 [756 B]
 93s Get:2 http://ftpmaster.internal/ubuntu plucky/main s390x libtcl8.6 s390x 8.6.15+dfsg-2 [1034 kB]
 93s Get:3 http://ftpmaster.internal/ubuntu plucky/main s390x libfreetype6 s390x 2.13.3+dfsg-1 [431 kB]
 93s Get:4 http://ftpmaster.internal/ubuntu plucky/main s390x fonts-dejavu-mono all 2.37-8 [502 kB]
 93s Get:5 http://ftpmaster.internal/ubuntu plucky/main s390x fonts-dejavu-core all 2.37-8 [835 kB]
 93s Get:6 http://ftpmaster.internal/ubuntu plucky/main s390x fontconfig-config s390x 2.15.0-1.1ubuntu2 [37.4 kB]
 93s Get:7 http://ftpmaster.internal/ubuntu plucky/main s390x libfontconfig1 s390x 2.15.0-1.1ubuntu2 [150 kB]
 93s Get:8 http://ftpmaster.internal/ubuntu plucky/main s390x libxrender1 s390x 1:0.9.10-1.1build1 [20.4 kB]
 93s Get:9 http://ftpmaster.internal/ubuntu plucky/main s390x libxft2 s390x 2.3.6-1build1 [49.6 kB]
 93s Get:10 http://ftpmaster.internal/ubuntu plucky/main s390x x11-common all 1:7.7+23ubuntu3 [21.7 kB]
 93s Get:11 http://ftpmaster.internal/ubuntu plucky/main s390x libxss1 s390x 1:1.2.3-1build3 [7396 B]
 93s Get:12 http://ftpmaster.internal/ubuntu plucky/main s390x libtk8.6 s390x 8.6.15-1 [828 kB]
 94s Get:13 http://ftpmaster.internal/ubuntu plucky/main s390x tk8.6-blt2.5 s390x 2.5.3+dfsg-7build1 [662 kB]
 94s Get:14 http://ftpmaster.internal/ubuntu plucky/main s390x blt s390x 2.5.3+dfsg-7build1 [4840 B]
 94s Get:15 http://ftpmaster.internal/ubuntu plucky/universe s390x fonts-lyx all 2.4.2.1-1 [171 kB]
 94s Get:16 http://ftpmaster.internal/ubuntu plucky/main s390x libblas3 s390x 3.12.0-3build2 [238 kB]
 94s Get:17 http://ftpmaster.internal/ubuntu plucky/main s390x libdeflate0 s390x 1.22-1 [46.1 kB]
 94s Get:18 http://ftpmaster.internal/ubuntu plucky/main s390x libgfortran5 s390x 14.2.0-8ubuntu1 [587 kB]
 94s Get:19 http://ftpmaster.internal/ubuntu plucky/main s390x libgomp1 s390x 14.2.0-8ubuntu1 [151 kB]
 94s Get:20 http://ftpmaster.internal/ubuntu plucky/main s390x libgraphite2-3 s390x 1.3.14-2ubuntu1 [79.8 kB]
 94s Get:21 http://ftpmaster.internal/ubuntu plucky/main s390x libharfbuzz0b s390x 10.0.1-1 [536 kB]
 94s Get:22 http://ftpmaster.internal/ubuntu plucky/universe s390x libhwloc15 s390x 2.11.2-1 [176 kB]
 94s Get:23 http://ftpmaster.internal/ubuntu plucky/main s390x libimagequant0 s390x 2.18.0-1build1 [43.3 kB]
 94s Get:24 http://ftpmaster.internal/ubuntu plucky/main s390x libjpeg-turbo8 s390x 2.1.5-2ubuntu2 [150 kB]
 94s Get:25 http://ftpmaster.internal/ubuntu plucky/main s390x libjpeg8 s390x 8c-2ubuntu11 [2146 B]
 94s Get:26 http://ftpmaster.internal/ubuntu plucky/main s390x libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [328 kB]
 94s Get:27 http://ftpmaster.internal/ubuntu plucky/universe s390x libjs-jquery-ui all 1.13.2+dfsg-1 [252 kB]
 94s Get:28 http://ftpmaster.internal/ubuntu plucky/main s390x liblapack3 s390x 3.12.0-3build2 [2953 kB]
 94s Get:29 http://ftpmaster.internal/ubuntu plucky/universe s390x liblbfgsb0 s390x 3.0+dfsg.4-1build1 [32.4 kB]
 94s Get:30 http://ftpmaster.internal/ubuntu plucky/main s390x liblcms2-2 s390x 2.16-2 [175 kB]
 94s Get:31 http://ftpmaster.internal/ubuntu plucky/universe s390x libqhull-r8.0 s390x 2020.2-6build1 [199 kB]
 94s Get:32 http://ftpmaster.internal/ubuntu plucky/main s390x libraqm0 s390x 0.10.1-1build1 [16.2 kB]
 94s Get:33 http://ftpmaster.internal/ubuntu plucky/main s390x libsharpyuv0 s390x 1.4.0-0.1 [16.2 kB]
 94s Get:34 http://ftpmaster.internal/ubuntu plucky/universe s390x libtbbmalloc2 s390x 2021.12.0-1ubuntu2 [57.2 kB]
 94s Get:35 http://ftpmaster.internal/ubuntu plucky/universe s390x libtbbbind-2-5 s390x 2021.12.0-1ubuntu2 [15.4 kB]
 94s Get:36 http://ftpmaster.internal/ubuntu plucky/universe s390x libtbb12 s390x 2021.12.0-1ubuntu2 [96.2 kB]
 94s Get:37 http://ftpmaster.internal/ubuntu plucky/main s390x libjbig0 s390x 2.1-6.1ubuntu2 [33.1 kB]
 94s Get:38 http://ftpmaster.internal/ubuntu plucky/main s390x libwebp7 s390x 1.4.0-0.1 [204 kB]
 94s Get:39 http://ftpmaster.internal/ubuntu plucky/main s390x libtiff6 s390x 4.5.1+git230720-4ubuntu4 [217 kB]
 94s Get:40 http://ftpmaster.internal/ubuntu plucky/main s390x libwebpdemux2 s390x 1.4.0-0.1 [12.2 kB]
 94s Get:41 http://ftpmaster.internal/ubuntu plucky/main s390x libwebpmux3 s390x 1.4.0-0.1 [25.3 kB]
 94s Get:42 http://ftpmaster.internal/ubuntu plucky/main s390x libxslt1.1 s390x 1.1.39-0exp1ubuntu1 [169 kB]
 94s Get:43 http://ftpmaster.internal/ubuntu plucky/universe s390x python-matplotlib-data all 3.8.3-3 [2928 kB]
 94s Get:44 http://ftpmaster.internal/ubuntu plucky/main s390x python3-all s390x 3.12.6-0ubuntu1 [890 B]
 94s Get:45 http://ftpmaster.internal/ubuntu plucky/main s390x python3-appdirs all 1.4.4-4 [10.9 kB]
 94s Get:46 http://ftpmaster.internal/ubuntu plucky/universe s390x python3-brotli s390x 1.1.0-2build2 [376 kB]
 94s Get:47 http://ftpmaster.internal/ubuntu plucky/main s390x python3-numpy s390x 1:1.26.4+ds-11build1 [4113 kB]
 94s Get:48 http://ftpmaster.internal/ubuntu plucky/universe s390x python3-contourpy s390x 1.3.0-2 [195 kB]
 94s Get:49 http://ftpmaster.internal/ubuntu plucky/universe s390x python3-cycler all 0.12.1-1 [9716 B]
 94s Get:50 http://ftpmaster.internal/ubuntu plucky/main s390x python3-six all 1.16.0-7 [13.1 kB]
 94s Get:51 http://ftpmaster.internal/ubuntu plucky/main s390x python3-dateutil all 2.9.0-2 [80.3 kB]
 94s Get:52 http://ftpmaster.internal/ubuntu plucky/main s390x python3-decorator all 5.1.1-5 [10.1 kB]
 94s Get:53 http://ftpmaster.internal/ubuntu plucky/universe s390x python3-eagerpy all 0.30.0-3 [19.0 kB]
 94s Get:54 http://ftpmaster.internal/ubuntu plucky/universe s390x python3-scipy s390x 1.13.1-5 [17.5 MB]
 94s Get:55 http://ftpmaster.internal/ubuntu plucky/universe s390x python3-ufolib2 all 0.16.1+dfsg1-1 [33.4 kB]
 94s Get:56 http://ftpmaster.internal/ubuntu plucky/universe s390x python3-mpmath all 1.3.0-1 [425 kB]
 94s Get:57 http://ftpmaster.internal/ubuntu plucky/universe s390x python3-sympy all 1.13.3-1 [4228 kB]
 95s Get:58 http://ftpmaster.internal/ubuntu plucky/main s390x python3-tz all 2024.1-2 [31.4 kB]
 95s Get:59 http://ftpmaster.internal/ubuntu plucky/universe s390x python3-fs all 2.4.16-4 [91.3 kB]
 95s Get:60 http://ftpmaster.internal/ubuntu plucky/main s390x python3-lxml s390x 5.3.0-1 [1314 kB]
 95s Get:61 http://ftpmaster.internal/ubuntu plucky/universe s390x python3-lz4 s390x 4.0.2+dfsg-1build4 [26.4 kB]
 95s Get:62 http://ftpmaster.internal/ubuntu plucky/universe s390x unicode-data all 15.1.0-1 [8878 kB]
 95s Get:63 http://ftpmaster.internal/ubuntu plucky/universe s390x python3-fonttools s390x 4.46.0-1build2 [1453 kB]
 95s Get:64 http://ftpmaster.internal/ubuntu plucky-proposed/universe s390x python3-gudhi s390x 3.10.1+dfsg-2build1 [3017 kB]
 95s Get:65 http://ftpmaster.internal/ubuntu plucky/universe s390x python3-iniconfig all 1.1.1-2 [6024 B]
 95s Get:66 http://ftpmaster.internal/ubuntu plucky/universe s390x python3-joblib all 1.3.2-5 [206 kB]
 95s Get:67 http://ftpmaster.internal/ubuntu plucky/universe s390x python3-kiwisolver s390x 1.4.7-2build1 [65.5 kB]
 95s Get:68 http://ftpmaster.internal/ubuntu plucky/main s390x libopenjp2-7 s390x 2.5.0-2ubuntu1 [208 kB]
 95s Get:69 http://ftpmaster.internal/ubuntu plucky/main s390x python3-pil s390x 10.4.0-1ubuntu1 [492 kB]
 95s Get:70 http://ftpmaster.internal/ubuntu plucky/main s390x python3.12-tk s390x 3.12.7-3 [117 kB]
 95s Get:71 http://ftpmaster.internal/ubuntu plucky/main s390x python3-tk s390x 3.12.6-1ubuntu1 [9806 B]
 95s Get:72 http://ftpmaster.internal/ubuntu plucky/universe s390x python3-pil.imagetk s390x 10.4.0-1ubuntu1 [9314 B]
 95s Get:73 http://ftpmaster.internal/ubuntu plucky/main s390x python3-packaging all 24.1-1 [41.4 kB]
 95s Get:74 http://ftpmaster.internal/ubuntu plucky/universe s390x python3-matplotlib s390x 3.8.3-3 [4554 kB]
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 95s Get:78 http://ftpmaster.internal/ubuntu plucky/universe s390x python3-threadpoolctl all 3.1.0-1 [21.3 kB]
 95s Get:79 http://ftpmaster.internal/ubuntu plucky/universe s390x python3-sklearn-lib s390x 1.4.2+dfsg-6 [4036 kB]
 95s Get:80 http://ftpmaster.internal/ubuntu plucky/universe s390x python3-sklearn all 1.4.2+dfsg-6 [2257 kB]
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106s Setting up python3-pytest (8.3.3-1) ...
106s Setting up libwebpdemux2:s390x (1.4.0-0.1) ...
106s Setting up libtbbbind-2-5:s390x (2021.12.0-1ubuntu2) ...
106s Setting up python3-fs (2.4.16-4) ...
107s Setting up libjs-jquery-ui (1.13.2+dfsg-1) ...
107s Setting up libraqm0:s390x (0.10.1-1build1) ...
107s Setting up python3-numpy (1:1.26.4+ds-11build1) ...
108s Setting up python3-lxml:s390x (5.3.0-1) ...
108s Setting up libtiff6:s390x (4.5.1+git230720-4ubuntu4) ...
108s Setting up python3-contourpy (1.3.0-2) ...
109s Setting up libfontconfig1:s390x (2.15.0-1.1ubuntu2) ...
109s Setting up liblbfgsb0:s390x (3.0+dfsg.4-1build1) ...
109s Setting up libxft2:s390x (2.3.6-1build1) ...
109s Setting up python3-scipy (1.13.1-5) ...
112s Setting up python3-pot (0.9.4+dfsg-1) ...
112s Setting up libtk8.6:s390x (8.6.15-1) ...
112s Setting up python3.12-tk (3.12.7-3) ...
112s Setting up python3-sklearn-lib:s390x (1.4.2+dfsg-6) ...
112s Setting up libtbb12:s390x (2021.12.0-1ubuntu2) ...
112s Setting up python3-pil:s390x (10.4.0-1ubuntu1) ...
112s Setting up python3-eagerpy (0.30.0-3) ...
113s Setting up python3-sklearn (1.4.2+dfsg-6) ...
115s Setting up tk8.6-blt2.5 (2.5.3+dfsg-7build1) ...
115s Setting up blt (2.5.3+dfsg-7build1) ...
115s Setting up python3-tk:s390x (3.12.6-1ubuntu1) ...
115s Setting up python3-gudhi (3.10.1+dfsg-2build1) ...
115s Setting up python3-pil.imagetk:s390x (10.4.0-1ubuntu1) ...
115s Setting up python3-fonttools (4.46.0-1build2) ...
116s Setting up python3-ufolib2 (0.16.1+dfsg1-1) ...
116s Setting up python3-matplotlib (3.8.3-3) ...
117s Setting up autopkgtest-satdep (0) ...
117s Processing triggers for libc-bin (2.40-1ubuntu3) ...
117s Processing triggers for man-db (2.13.0-1) ...
120s (Reading database ... 63876 files and directories currently installed.)
120s Removing autopkgtest-satdep (0) ...
121s autopkgtest [07:37:14]: test python-upstream.sh: [-----------------------
121s Running tests with Python 3.12.
122s Blacklist: ['test_knn.py', 'test_representations.py', 'test_wasserstein_distance.py::test_wasserstein_distance_grad', 'test_remote_datasets.py']
122s Ignorelist: ['test_diff.py', 'test_dtm.py', 'test_perslay.py', 'test_wasserstein_with_tensors.py']
122s ============================= test session starts ==============================
122s platform linux -- Python 3.12.7, pytest-8.3.3, pluggy-1.5.0
122s rootdir: /tmp/autopkgtest.WOBQJJ/autopkgtest_tmp
122s plugins: typeguard-4.4.1
122s collected 165 items / 31 deselected / 134 selected
122s 
122s test/test_alpha_complex.py .............                                 [  9%]
123s test/test_betti_curve_representations.py ....                            [ 12%]
123s test/test_bottleneck_distance.py .                                       [ 13%]
123s test/test_collapse_edges.py ..                                           [ 14%]
123s test/test_cover_complex.py .......                                       [ 20%]
123s test/test_cubical_complex.py ..................                          [ 33%]
123s test/test_datasets_generators.py ..                                      [ 35%]
123s test/test_dtm_rips_complex.py ...                                        [ 37%]
123s test/test_euclidean_witness_complex.py ....                              [ 40%]
123s test/test_off.py ....                                                    [ 43%]
123s test/test_persistence_graphical_tools.py ......                          [ 47%]
123s test/test_reader_utils.py ......                                         [ 52%]
123s test/test_representations_preprocessing.py .                             [ 52%]
123s test/test_rips_complex.py .......                                        [ 58%]
123s test/test_simplex_generators.py ...                                      [ 60%]
123s test/test_simplex_tree.py ....................                           [ 75%]
123s test/test_simplex_tree_serialization.py ..                               [ 76%]
123s test/test_sklearn_cubical_persistence.py ...                             [ 79%]
124s test/test_sklearn_rips_persistence.py ....                               [ 82%]
124s test/test_subsampling.py .....                                           [ 85%]
124s test/test_tangential_complex.py .                                        [ 86%]
124s test/test_time_delay.py .                                                [ 87%]
124s test/test_tomato.py ..                                                   [ 88%]
124s test/test_wasserstein_barycenter.py .                                    [ 89%]
124s test/test_wasserstein_distance.py ......Fatal Python error: Aborted
124s 
124s Current thread 0x000003ff85df80e0 (most recent call first):
124s   File "/tmp/autopkgtest.WOBQJJ/autopkgtest_tmp/test/test_wasserstein_distance.py", line 191 in fun
124s   File "/tmp/autopkgtest.WOBQJJ/autopkgtest_tmp/test/test_wasserstein_distance.py", line 181 in _basic_wasserstein
124s   File "/tmp/autopkgtest.WOBQJJ/autopkgtest_tmp/test/test_wasserstein_distance.py", line 207 in test_wasserstein_distance_hera
124s   File "/usr/lib/python3/dist-packages/_pytest/python.py", line 159 in pytest_pyfunc_call
124s   File "/usr/lib/python3/dist-packages/pluggy/_callers.py", line 103 in _multicall
124s   File "/usr/lib/python3/dist-packages/pluggy/_manager.py", line 120 in _hookexec
124s   File "/usr/lib/python3/dist-packages/pluggy/_hooks.py", line 513 in __call__
124s   File "/usr/lib/python3/dist-packages/_pytest/python.py", line 1627 in runtest
124s   File "/usr/lib/python3/dist-packages/_pytest/runner.py", line 174 in pytest_runtest_call
124s   File "/usr/lib/python3/dist-packages/pluggy/_callers.py", line 103 in _multicall
124s   File "/usr/lib/python3/dist-packages/pluggy/_manager.py", line 120 in _hookexec
124s   File "/usr/lib/python3/dist-packages/pluggy/_hooks.py", line 513 in __call__
124s   File "/usr/lib/python3/dist-packages/_pytest/runner.py", line 242 in <lambda>
124s   File "/usr/lib/python3/dist-packages/_pytest/runner.py", line 341 in from_call
124s   File "/usr/lib/python3/dist-packages/_pytest/runner.py", line 241 in call_and_report
124s   File "/usr/lib/python3/dist-packages/_pytest/runner.py", line 132 in runtestprotocol
124s   File "/usr/lib/python3/dist-packages/_pytest/runner.py", line 113 in pytest_runtest_protocol
124s   File "/usr/lib/python3/dist-packages/pluggy/_callers.py", line 103 in _multicall
124s   File "/usr/lib/python3/dist-packages/pluggy/_manager.py", line 120 in _hookexec
124s   File "/usr/lib/python3/dist-packages/pluggy/_hooks.py", line 513 in __call__
124s   File "/usr/lib/python3/dist-packages/_pytest/main.py", line 362 in pytest_runtestloop
124s   File "/usr/lib/python3/dist-packages/pluggy/_callers.py", line 103 in _multicall
124s   File "/usr/lib/python3/dist-packages/pluggy/_manager.py", line 120 in _hookexec
124s   File "/usr/lib/python3/dist-packages/pluggy/_hooks.py", line 513 in __call__
124s   File "/usr/lib/python3/dist-packages/_pytest/main.py", line 337 in _main
124s   File "/usr/lib/python3/dist-packages/_pytest/main.py", line 283 in wrap_session
124s   File "/usr/lib/python3/dist-packages/_pytest/main.py", line 330 in pytest_cmdline_main
124s   File "/usr/lib/python3/dist-packages/pluggy/_callers.py", line 103 in _multicall
124s   File "/usr/lib/python3/dist-packages/pluggy/_manager.py", line 120 in _hookexec
124s   File "/usr/lib/python3/dist-packages/pluggy/_hooks.py", line 513 in __call__
124s   File "/usr/lib/python3/dist-packages/_pytest/config/__init__.py", line 175 in main
124s   File "/tmp/autopkgtest.WOBQJJ/autopkgtest_tmp/upstream.py", line 27 in <module>
124s 
124s Extension modules: numpy.core._multiarray_umath, numpy.core._multiarray_tests, numpy.linalg._umath_linalg, numpy.fft._pocketfft_internal, numpy.random._common, numpy.random.bit_generator, numpy.random._bounded_integers, numpy.random._mt19937, numpy.random.mtrand, numpy.random._philox, numpy.random._pcg64, numpy.random._sfc64, numpy.random._generator, gudhi.off_utils, gudhi.simplex_tree, gudhi.rips_complex, gudhi.cubical_complex, gudhi.periodic_cubical_complex, gudhi.reader_utils, gudhi.witness_complex, gudhi.strong_witness_complex, gudhi.nerve_gic, gudhi.subsampling, gudhi.tangential_complex, gudhi.alpha_complex, gudhi.euclidean_witness_complex, gudhi.euclidean_strong_witness_complex, scipy._lib._ccallback_c, scipy.special._ufuncs_cxx, scipy.special._cdflib, scipy.special._ufuncs, scipy.special._specfun, scipy.special._comb, scipy.linalg._fblas, scipy.linalg._flapack, scipy.linalg.cython_lapack, scipy.linalg._cythonized_array_utils, scipy.linalg._solve_toeplitz, scipy.linalg._decomp_lu_cython, scipy.linalg._matfuncs_sqrtm_triu, scipy.linalg.cython_blas, scipy.linalg._matfuncs_expm, scipy.linalg._decomp_update, scipy.sparse._sparsetools, _csparsetools, scipy.sparse._csparsetools, scipy.sparse.linalg._dsolve._superlu, scipy.sparse.linalg._eigen.arpack._arpack, scipy.sparse.linalg._propack._spropack, scipy.sparse.linalg._propack._dpropack, scipy.sparse.linalg._propack._cpropack, scipy.sparse.linalg._propack._zpropack, scipy.sparse.csgraph._tools, scipy.sparse.csgraph._shortest_path, scipy.sparse.csgraph._traversal, scipy.sparse.csgraph._min_spanning_tree, scipy.sparse.csgraph._flow, scipy.sparse.csgraph._matching, scipy.sparse.csgraph._reordering, scipy.special._ellip_harm_2, scipy.interpolate._fitpack, scipy.interpolate.dfitpack, scipy.optimize._minpack2, scipy.optimize._group_columns, scipy._lib.messagestream, scipy.optimize._trlib._trlib, scipy.optimize._lbfgsb, _moduleTNC, scipy.optimize._moduleTNC, scipy.optimize._cobyla, scipy.optimize._slsqp, scipy.optimize._minpack, scipy.optimize._lsq.givens_elimination, scipy.optimize._zeros, scipy.optimize._highs.cython.src._highs_wrapper, scipy.optimize._highs._highs_wrapper, scipy.optimize._highs.cython.src._highs_constants, scipy.optimize._highs._highs_constants, scipy.linalg._interpolative, scipy.optimize._bglu_dense, scipy.optimize._lsap, scipy.spatial._ckdtree, scipy.spatial._qhull, scipy.spatial._voronoi, scipy.spatial._distance_wrap, scipy.spatial._hausdorff, scipy.spatial.transform._rotation, scipy.optimize._direct, scipy.interpolate._bspl, scipy.interpolate._ppoly, scipy.interpolate.interpnd, scipy.interpolate._rbfinterp_pythran, scipy.interpolate._rgi_cython, sklearn.__check_build._check_build, lz4._version, lz4.frame._frame, scipy.ndimage._nd_image, _ni_label, scipy.ndimage._ni_label, scipy.integrate._odepack, scipy.integrate._quadpack, scipy.integrate._vode, scipy.integrate._dop, scipy.integrate._lsoda, scipy.special.cython_special, scipy.stats._stats, scipy.stats.beta_ufunc, scipy.stats._boost.beta_ufunc, scipy.stats.binom_ufunc, scipy.stats._boost.binom_ufunc, scipy.stats.nbinom_ufunc, scipy.stats._boost.nbinom_ufunc, scipy.stats.hypergeom_ufunc, scipy.stats._boost.hypergeom_ufunc, scipy.stats.ncf_ufunc, scipy.stats._boost.ncf_ufunc, scipy.stats.ncx2_ufunc, scipy.stats._boost.ncx2_ufunc, scipy.stats.nct_ufunc, scipy.stats._boost.nct_ufunc, scipy.stats.skewnorm_ufunc, scipy.stats._boost.skewnorm_ufunc, scipy.stats.invgauss_ufunc, scipy.stats._boost.invgauss_ufunc, scipy.stats._biasedurn, scipy.stats._levy_stable.levyst, scipy.stats._stats_pythran, scipy._lib._uarray._uarray, scipy.stats._ansari_swilk_statistics, scipy.stats._sobol, scipy.stats._qmc_cy, scipy.stats._mvn, scipy.stats._rcont.rcont, scipy.stats._unuran.unuran_wrapper, sklearn.utils._isfinite, sklearn.utils.murmurhash, sklearn.utils._openmp_helpers, sklearn.metrics.cluster._expected_mutual_info_fast, sklearn.utils.sparsefuncs_fast, sklearn.preprocessing._csr_polynomial_expansion, sklearn.preprocessing._target_encoder_fast, sklearn.metrics._dist_metrics, sklearn.metrics._pairwise_distances_reduction._datasets_pair, sklearn.utils._cython_blas, sklearn.metrics._pairwise_distances_reduction._base, sklearn.metrics._pairwise_distances_reduction._middle_term_computer, sklearn.utils._heap, sklearn.utils._sorting, sklearn.metrics._pairwise_distances_reduction._argkmin, sklearn.metrics._pairwise_distances_reduction._argkmin_classmode, sklearn.utils._vector_sentinel, sklearn.metrics._pairwise_distances_reduction._radius_neighbors, sklearn.metrics._pairwise_distances_reduction._radius_neighbors_classmode, sklearn.metrics._pairwise_fast, sklearn.utils._fast_dict, sklearn.cluster._hierarchical_fast, sklearn.cluster._k_means_common, sklearn.cluster._k_means_elkan, sklearn.cluster._k_means_lloyd, sklearn.cluster._k_means_minibatch, sklearn.neighbors._partition_nodes, sklearn.neighbors._ball_tree, sklearn.neighbors._kd_tree, sklearn.utils.arrayfuncs, sklearn.utils._random, sklearn.utils._seq_dataset, sklearn.linear_model._cd_fast, sklearn._loss._loss, sklearn.svm._liblinear, sklearn.svm._libsvm, sklearn.svm._libsvm_sparse, sklearn.utils._weight_vector, sklearn.linear_model._sgd_fast, sklearn.linear_model._sag_fast, sklearn.decomposition._online_lda_fast, sklearn.decomposition._cdnmf_fast, sklearn.cluster._dbscan_inner, sklearn.cluster._hdbscan._tree, sklearn.cluster._hdbscan._linkage, sklearn.cluster._hdbscan._reachability, sklearn._isotonic, sklearn.tree._utils, sklearn.tree._tree, sklearn.tree._splitter, sklearn.tree._criterion, sklearn.neighbors._quad_tree, sklearn.manifold._barnes_hut_tsne, sklearn.manifold._utils, matplotlib._c_internal_utils, PIL._imaging, matplotlib._path, kiwisolver._cext, matplotlib._image, scipy.io.matlab._mio_utils, scipy.io.matlab._streams, scipy.io.matlab._mio5_utils, sklearn.datasets._svmlight_format_fast, sklearn.feature_extraction._hashing_fast, ot.lp.emd_wrap, scipy.cluster._vq, scipy.cluster._hierarchy, scipy.cluster._optimal_leaf_ordering (total: 202)
130s /tmp/autopkgtest.WOBQJJ/build.WFn/src/debian/tests/python-upstream.sh: line 14:  2793 Aborted                 (core dumped) /usr/bin/python${py3ver} -B upstream.py test
130s autopkgtest [07:37:23]: test python-upstream.sh: -----------------------]
130s autopkgtest [07:37:23]: test python-upstream.sh:  - - - - - - - - - - results - - - - - - - - - -
130s python-upstream.sh   FAIL non-zero exit status 134
131s autopkgtest [07:37:24]: @@@@@@@@@@@@@@@@@@@@ summary
131s python-upstream.sh   FAIL non-zero exit status 134
137s nova [W] Using flock in prodstack6-s390x
137s Creating nova instance adt-plucky-s390x-gudhi-20241115-073513-juju-7f2275-prod-proposed-migration-environment-15-f9d2df32-882d-478e-881f-def457e893be from image adt/ubuntu-plucky-s390x-server-20241114.img (UUID 41a907ef-1f3c-4685-a0eb-228b0d61c6b5)...