0s autopkgtest [22:06:18]: starting date and time: 2025-02-15 22:06:18+0000
  0s autopkgtest [22:06:18]: git checkout: 325255d2 Merge branch 'pin-any-arch' into 'ubuntu/production'
  0s autopkgtest [22:06:18]: host juju-7f2275-prod-proposed-migration-environment-2; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.6tew1d3p/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:glibc,src:iproute2,src:php-twig,src:postgresql-17,src:postgresql-common,src:roundcube --apt-upgrade diamond-aligner --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 '--env=ADT_TEST_TRIGGERS=glibc/2.41-1ubuntu1 iproute2/6.13.0-1ubuntu1 php-twig/3.19.0-1 postgresql-17/17.3-2 postgresql-common/273 roundcube/1.6.10+dfsg-1' -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest-s390x --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-2@bos03-s390x-22.secgroup --name adt-plucky-s390x-diamond-aligner-20250215-220618-juju-7f2275-prod-proposed-migration-environment-2-6c90054a-ba98-47e7-9c5d-ff82926e176a --image adt/ubuntu-plucky-s390x-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-2 --net-id=net_prod-proposed-migration-s390x -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,keyserver.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com,radosgw.ps5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/
103s autopkgtest [22:08:01]: testbed dpkg architecture: s390x
103s autopkgtest [22:08:01]: testbed apt version: 2.9.28
103s autopkgtest [22:08:01]: @@@@@@@@@@@@@@@@@@@@ test bed setup
103s autopkgtest [22:08:01]: testbed release detected to be: None
104s autopkgtest [22:08:02]: updating testbed package index (apt update)
105s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease [110 kB]
105s Hit:2 http://ftpmaster.internal/ubuntu plucky InRelease
105s Hit:3 http://ftpmaster.internal/ubuntu plucky-updates InRelease
105s Hit:4 http://ftpmaster.internal/ubuntu plucky-security InRelease
105s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/restricted Sources [3120 B]
105s Get:6 http://ftpmaster.internal/ubuntu plucky-proposed/main Sources [74.3 kB]
105s Get:7 http://ftpmaster.internal/ubuntu plucky-proposed/universe Sources [828 kB]
105s Get:8 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse Sources [13.1 kB]
105s Get:9 http://ftpmaster.internal/ubuntu plucky-proposed/main s390x Packages [163 kB]
105s Get:10 http://ftpmaster.internal/ubuntu plucky-proposed/restricted s390x Packages [760 B]
105s Get:11 http://ftpmaster.internal/ubuntu plucky-proposed/universe s390x Packages [876 kB]
105s Get:12 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse s390x Packages [3740 B]
105s Fetched 2073 kB in 1s (2096 kB/s)
106s Reading package lists...
107s Reading package lists...
107s Building dependency tree...
107s Reading state information...
107s Calculating upgrade...
107s The following packages were automatically installed and are no longer required:
107s   libnsl2 libpython3.12-minimal libpython3.12-stdlib libpython3.12t64
107s   linux-headers-6.11.0-8 linux-headers-6.11.0-8-generic
107s   linux-modules-6.11.0-8-generic linux-tools-6.11.0-8
107s   linux-tools-6.11.0-8-generic
107s Use 'sudo apt autoremove' to remove them.
107s The following packages will be upgraded:
107s   dash gcc-14-base libatomic1 libgcc-s1 libstdc++6 libtasn1-6 libxdmcp6
107s 7 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
107s Need to get 1155 kB of archives.
107s After this operation, 16.4 kB of additional disk space will be used.
107s Get:1 http://ftpmaster.internal/ubuntu plucky/main s390x dash s390x 0.5.12-12ubuntu1 [100 kB]
108s Get:2 http://ftpmaster.internal/ubuntu plucky/main s390x libatomic1 s390x 14.2.0-17ubuntu1 [9430 B]
108s Get:3 http://ftpmaster.internal/ubuntu plucky/main s390x gcc-14-base s390x 14.2.0-17ubuntu1 [53.5 kB]
108s Get:4 http://ftpmaster.internal/ubuntu plucky/main s390x libstdc++6 s390x 14.2.0-17ubuntu1 [896 kB]
108s Get:5 http://ftpmaster.internal/ubuntu plucky/main s390x libgcc-s1 s390x 14.2.0-17ubuntu1 [35.9 kB]
108s Get:6 http://ftpmaster.internal/ubuntu plucky/main s390x libtasn1-6 s390x 4.20.0-2 [48.6 kB]
108s Get:7 http://ftpmaster.internal/ubuntu plucky/main s390x libxdmcp6 s390x 1:1.1.5-1 [11.0 kB]
108s Preconfiguring packages ...
108s Fetched 1155 kB in 1s (1861 kB/s)
108s (Reading database ... 
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108s Preparing to unpack .../dash_0.5.12-12ubuntu1_s390x.deb ...
108s Unpacking dash (0.5.12-12ubuntu1) over (0.5.12-9ubuntu1) ...
108s Setting up dash (0.5.12-12ubuntu1) ...
108s (Reading database ... 
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108s Preparing to unpack .../libatomic1_14.2.0-17ubuntu1_s390x.deb ...
108s Unpacking libatomic1:s390x (14.2.0-17ubuntu1) over (14.2.0-16ubuntu1) ...
108s Preparing to unpack .../gcc-14-base_14.2.0-17ubuntu1_s390x.deb ...
108s Unpacking gcc-14-base:s390x (14.2.0-17ubuntu1) over (14.2.0-16ubuntu1) ...
108s Setting up gcc-14-base:s390x (14.2.0-17ubuntu1) ...
108s (Reading database ... 
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108s Preparing to unpack .../libstdc++6_14.2.0-17ubuntu1_s390x.deb ...
108s Unpacking libstdc++6:s390x (14.2.0-17ubuntu1) over (14.2.0-16ubuntu1) ...
108s Setting up libstdc++6:s390x (14.2.0-17ubuntu1) ...
108s (Reading database ... 
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108s Preparing to unpack .../libgcc-s1_14.2.0-17ubuntu1_s390x.deb ...
108s Unpacking libgcc-s1:s390x (14.2.0-17ubuntu1) over (14.2.0-16ubuntu1) ...
108s Setting up libgcc-s1:s390x (14.2.0-17ubuntu1) ...
109s (Reading database ... 
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109s Preparing to unpack .../libtasn1-6_4.20.0-2_s390x.deb ...
109s Unpacking libtasn1-6:s390x (4.20.0-2) over (4.19.0-3build1) ...
109s Preparing to unpack .../libxdmcp6_1%3a1.1.5-1_s390x.deb ...
109s Unpacking libxdmcp6:s390x (1:1.1.5-1) over (1:1.1.3-0ubuntu6) ...
109s Setting up libxdmcp6:s390x (1:1.1.5-1) ...
109s Setting up libatomic1:s390x (14.2.0-17ubuntu1) ...
109s Setting up libtasn1-6:s390x (4.20.0-2) ...
109s Processing triggers for libc-bin (2.40-4ubuntu1) ...
109s Processing triggers for man-db (2.13.0-1) ...
109s Processing triggers for debianutils (5.21) ...
109s Reading package lists...
109s Building dependency tree...
109s Reading state information...
110s The following packages will be REMOVED:
110s   libnsl2* libpython3.12-minimal* libpython3.12-stdlib* libpython3.12t64*
110s   linux-headers-6.11.0-8* linux-headers-6.11.0-8-generic*
110s   linux-modules-6.11.0-8-generic* linux-tools-6.11.0-8*
110s   linux-tools-6.11.0-8-generic*
110s 0 upgraded, 0 newly installed, 9 to remove and 6 not upgraded.
110s After this operation, 167 MB disk space will be freed.
110s (Reading database ... 
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110s Removing linux-tools-6.11.0-8-generic (6.11.0-8.8) ...
110s Removing linux-tools-6.11.0-8 (6.11.0-8.8) ...
110s Removing libpython3.12t64:s390x (3.12.9-1) ...
110s Removing libpython3.12-stdlib:s390x (3.12.9-1) ...
110s Removing libnsl2:s390x (1.3.0-3build3) ...
110s Removing libpython3.12-minimal:s390x (3.12.9-1) ...
110s Removing linux-headers-6.11.0-8-generic (6.11.0-8.8) ...
110s Removing linux-headers-6.11.0-8 (6.11.0-8.8) ...
111s Removing linux-modules-6.11.0-8-generic (6.11.0-8.8) ...
111s Processing triggers for libc-bin (2.40-4ubuntu1) ...
111s (Reading database ... 
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111s Purging configuration files for libpython3.12-minimal:s390x (3.12.9-1) ...
111s Purging configuration files for linux-modules-6.11.0-8-generic (6.11.0-8.8) ...
111s autopkgtest [22:08:09]: upgrading testbed (apt dist-upgrade and autopurge)
111s Reading package lists...
112s Building dependency tree...
112s Reading state information...
112s Calculating upgrade...Starting pkgProblemResolver with broken count: 0
112s Starting 2 pkgProblemResolver with broken count: 0
112s Done
112s Entering ResolveByKeep
112s 
112s The following packages will be upgraded:
112s   iproute2 libc-bin libc-dev-bin libc6 libc6-dev locales
112s 6 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
112s Need to get 10.7 MB of archives.
112s After this operation, 305 kB of additional disk space will be used.
112s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed/main s390x libc-dev-bin s390x 2.41-1ubuntu1 [24.3 kB]
113s Get:2 http://ftpmaster.internal/ubuntu plucky-proposed/main s390x libc6-dev s390x 2.41-1ubuntu1 [1679 kB]
113s Get:3 http://ftpmaster.internal/ubuntu plucky-proposed/main s390x locales all 2.41-1ubuntu1 [4246 kB]
113s Get:4 http://ftpmaster.internal/ubuntu plucky-proposed/main s390x libc6 s390x 2.41-1ubuntu1 [2891 kB]
113s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/main s390x libc-bin s390x 2.41-1ubuntu1 [672 kB]
113s Get:6 http://ftpmaster.internal/ubuntu plucky-proposed/main s390x iproute2 s390x 6.13.0-1ubuntu1 [1174 kB]
114s Preconfiguring packages ...
114s Fetched 10.7 MB in 1s (10.2 MB/s)
114s (Reading database ... 
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114s Preparing to unpack .../libc-dev-bin_2.41-1ubuntu1_s390x.deb ...
114s Unpacking libc-dev-bin (2.41-1ubuntu1) over (2.40-4ubuntu1) ...
114s Preparing to unpack .../libc6-dev_2.41-1ubuntu1_s390x.deb ...
114s Unpacking libc6-dev:s390x (2.41-1ubuntu1) over (2.40-4ubuntu1) ...
114s Preparing to unpack .../locales_2.41-1ubuntu1_all.deb ...
114s Unpacking locales (2.41-1ubuntu1) over (2.40-4ubuntu1) ...
114s Preparing to unpack .../libc6_2.41-1ubuntu1_s390x.deb ...
114s Checking for services that may need to be restarted...
114s Checking init scripts...
114s Checking for services that may need to be restarted...
114s Checking init scripts...
114s Stopping some services possibly affected by the upgrade (will be restarted later):
114s   cron: stopping...done.
114s 
114s Unpacking libc6:s390x (2.41-1ubuntu1) over (2.40-4ubuntu1) ...
114s Setting up libc6:s390x (2.41-1ubuntu1) ...
114s Checking for services that may need to be restarted...
114s Checking init scripts...
114s Restarting services possibly affected by the upgrade:
114s   cron: restarting...done.
114s 
114s Services restarted successfully.
114s (Reading database ... 
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114s Preparing to unpack .../libc-bin_2.41-1ubuntu1_s390x.deb ...
114s Unpacking libc-bin (2.41-1ubuntu1) over (2.40-4ubuntu1) ...
114s Setting up libc-bin (2.41-1ubuntu1) ...
114s (Reading database ... 
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114s Preparing to unpack .../iproute2_6.13.0-1ubuntu1_s390x.deb ...
114s Unpacking iproute2 (6.13.0-1ubuntu1) over (6.10.0-2ubuntu1) ...
115s Setting up iproute2 (6.13.0-1ubuntu1) ...
115s Setting up locales (2.41-1ubuntu1) ...
115s Installing new version of config file /etc/locale.alias ...
115s Generating locales (this might take a while)...
116s   en_US.UTF-8... done
116s Generation complete.
116s Setting up libc-dev-bin (2.41-1ubuntu1) ...
116s Setting up libc6-dev:s390x (2.41-1ubuntu1) ...
116s Processing triggers for man-db (2.13.0-1) ...
117s Processing triggers for systemd (257.2-3ubuntu1) ...
118s Reading package lists...
118s Building dependency tree...
118s Reading state information...
118s Starting pkgProblemResolver with broken count: 0
118s Starting 2 pkgProblemResolver with broken count: 0
118s Done
118s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
119s autopkgtest [22:08:17]: rebooting testbed after setup commands that affected boot
139s autopkgtest [22:08:37]: testbed running kernel: Linux 6.12.0-15-generic #15-Ubuntu SMP Tue Feb  4 15:05:57 UTC 2025
141s autopkgtest [22:08:39]: @@@@@@@@@@@@@@@@@@@@ apt-source diamond-aligner
143s Get:1 http://ftpmaster.internal/ubuntu plucky/universe diamond-aligner 2.1.9-1 (dsc) [2199 B]
143s Get:2 http://ftpmaster.internal/ubuntu plucky/universe diamond-aligner 2.1.9-1 (tar) [4310 kB]
143s Get:3 http://ftpmaster.internal/ubuntu plucky/universe diamond-aligner 2.1.9-1 (diff) [129 kB]
143s gpgv: Signature made Wed Feb  7 10:24:42 2024 UTC
143s gpgv:                using RSA key F1F007320A035541F0A663CA578A0494D1C646D1
143s gpgv:                issuer "tille@debian.org"
143s gpgv: Can't check signature: No public key
143s dpkg-source: warning: cannot verify inline signature for ./diamond-aligner_2.1.9-1.dsc: no acceptable signature found
144s autopkgtest [22:08:42]: testing package diamond-aligner version 2.1.9-1
144s autopkgtest [22:08:42]: build not needed
145s autopkgtest [22:08:43]: test run-unit-test: preparing testbed
146s Reading package lists...
146s Building dependency tree...
146s Reading state information...
146s Starting pkgProblemResolver with broken count: 0
146s Starting 2 pkgProblemResolver with broken count: 0
146s Done
146s The following NEW packages will be installed:
146s   diamond-aligner
146s 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded.
146s Need to get 2266 kB of archives.
146s After this operation, 5778 kB of additional disk space will be used.
146s Get:1 http://ftpmaster.internal/ubuntu plucky/universe s390x diamond-aligner s390x 2.1.9-1 [2266 kB]
147s Fetched 2266 kB in 1s (3622 kB/s)
147s Selecting previously unselected package diamond-aligner.
147s (Reading database ... 
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(Reading database ... 55869 files and directories currently installed.)
147s Preparing to unpack .../diamond-aligner_2.1.9-1_s390x.deb ...
147s Unpacking diamond-aligner (2.1.9-1) ...
147s Setting up diamond-aligner (2.1.9-1) ...
147s Processing triggers for man-db (2.13.0-1) ...
148s autopkgtest [22:08:46]: test run-unit-test: [-----------------------
149s + mktemp -d
149s + TESTDIR=/tmp/tmp.gdxNHDneSh
149s + diamond blastp --threads 1 --db test/C.faa.diamond --query test/E.faa --out /tmp/tmp.gdxNHDneSh/E.faa.vs.C.faa.diamond -e 1e-05 --outfmt 6 --sensitive
149s diamond v2.1.9.163 (C) Max Planck Society for the Advancement of Science, Benjamin Buchfink, University of Tuebingen
149s Documentation, support and updates available at http://www.diamondsearch.org
149s Please cite: http://dx.doi.org/10.1038/s41592-021-01101-x Nature Methods (2021)
149s 
149s #CPU threads: 1
149s Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1)
149s Temporary directory: /tmp/tmp.gdxNHDneSh
149s #Target sequences to report alignments for: 25
149s Opening the database...  [0s]
149s Database: test/C.faa.diamond (type: Diamond database, sequences: 109, letters: 51213)
149s Block size = 2000000000
149s Opening the input file...  [0s]
149s Opening the output file...  [0s]
149s Loading query sequences...  [0s]
149s Masking queries...  [0.012s]
149s Algorithm: Double-indexed
149s Building query histograms...  [0.013s]
149s Seeking in database...  [0s]
149s Loading reference sequences...  [0s]
149s Masking reference...  [0.011s]
149s Initializing temporary storage...  [0s]
149s Building reference histograms...  [0.012s]
149s Allocating buffers...  [0s]
149s Processing query block 1, reference block 1/1, shape 1/16, index chunk 1/4.
149s Building reference seed array...  [0.002s]
149s Building query seed array...  [0.002s]
149s Computing hash join...  [0s]
149s Masking low complexity seeds...  [0s]
149s Searching alignments...  [0s]
149s Deallocating memory...  [0s]
149s Processing query block 1, reference block 1/1, shape 1/16, index chunk 2/4.
149s Building reference seed array...  [0.002s]
149s Building query seed array...  [0.002s]
149s Computing hash join...  [0s]
149s Masking low complexity seeds...  [0s]
149s Searching alignments...  [0s]
149s Deallocating memory...  [0s]
149s Processing query block 1, reference block 1/1, shape 1/16, index chunk 3/4.
149s Building reference seed array...  [0.002s]
149s Building query seed array...  [0.002s]
149s Computing hash join...  [0s]
149s Masking low complexity seeds...  [0s]
149s Searching alignments...  [0s]
149s Deallocating memory...  [0s]
149s Processing query block 1, reference block 1/1, shape 1/16, index chunk 4/4.
149s Building reference seed array...  [0.002s]
149s Building query seed array...  [0.002s]
149s Computing hash join...  [0s]
149s Masking low complexity seeds...  [0s]
149s Searching alignments...  [0s]
149s Deallocating memory...  [0s]
149s Processing query block 1, reference block 1/1, shape 2/16, index chunk 1/4.
149s Building reference seed array...  [0.002s]
149s Building query seed array...  [0.002s]
149s Computing hash join...  [0s]
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149s Searching alignments...  [0s]
149s Deallocating memory...  [0s]
149s Processing query block 1, reference block 1/1, shape 2/16, index chunk 2/4.
149s Building reference seed array...  [0.002s]
149s Building query seed array...  [0.002s]
149s Computing hash join...  [0s]
149s Masking low complexity seeds...  [0s]
149s Searching alignments...  [0s]
149s Deallocating memory...  [0s]
149s Processing query block 1, reference block 1/1, shape 2/16, index chunk 3/4.
149s Building reference seed array...  [0.002s]
149s Building query seed array...  [0.002s]
149s Computing hash join...  [0s]
149s Masking low complexity seeds...  [0s]
149s Searching alignments...  [0s]
149s Deallocating memory...  [0s]
149s Processing query block 1, reference block 1/1, shape 2/16, index chunk 4/4.
149s Building reference seed array...  [0.002s]
149s Building query seed array...  [0.002s]
149s Computing hash join...  [0s]
149s Masking low complexity seeds...  [0s]
149s Searching alignments...  [0s]
149s Deallocating memory...  [0s]
149s Processing query block 1, reference block 1/1, shape 3/16, index chunk 1/4.
149s Building reference seed array...  [0.002s]
149s Building query seed array...  [0.002s]
149s Computing hash join...  [0s]
149s Masking low complexity seeds...  [0s]
149s Searching alignments...  [0s]
149s Deallocating memory...  [0s]
149s Processing query block 1, reference block 1/1, shape 3/16, index chunk 2/4.
149s Building reference seed array...  [0.002s]
149s Building query seed array...  [0.002s]
149s Computing hash join...  [0s]
149s Masking low complexity seeds...  [0s]
149s Searching alignments...  [0s]
149s Deallocating memory...  [0s]
149s Processing query block 1, reference block 1/1, shape 3/16, index chunk 3/4.
149s Building reference seed array...  [0.002s]
149s Building query seed array...  [0.002s]
149s Computing hash join...  [0s]
149s Masking low complexity seeds...  [0s]
149s Searching alignments...  [0s]
149s Deallocating memory...  [0s]
149s Processing query block 1, reference block 1/1, shape 3/16, index chunk 4/4.
149s Building reference seed array...  [0.002s]
149s Building query seed array...  [0.002s]
149s Computing hash join...  [0s]
149s Masking low complexity seeds...  [0s]
149s Searching alignments...  [0s]
149s Deallocating memory...  [0s]
149s Processing query block 1, reference block 1/1, shape 4/16, index chunk 1/4.
149s Building reference seed array...  [0.002s]
149s Building query seed array...  [0.002s]
149s Computing hash join...  [0s]
149s Masking low complexity seeds...  [0s]
149s Searching alignments...  [0s]
149s Deallocating memory...  [0s]
149s Processing query block 1, reference block 1/1, shape 4/16, index chunk 2/4.
149s Building reference seed array...  [0.002s]
149s Building query seed array...  [0.002s]
149s Computing hash join...  [0s]
149s Masking low complexity seeds...  [0s]
149s Searching alignments...  [0s]
149s Deallocating memory...  [0s]
149s Processing query block 1, reference block 1/1, shape 4/16, index chunk 3/4.
149s Building reference seed array...  [0.002s]
149s Building query seed array...  [0.002s]
149s Computing hash join...  [0s]
149s Masking low complexity seeds...  [0s]
149s Searching alignments...  [0s]
149s Deallocating memory...  [0s]
149s Processing query block 1, reference block 1/1, shape 4/16, index chunk 4/4.
149s Building reference seed array...  [0.002s]
149s Building query seed array...  [0.002s]
149s Computing hash join...  [0s]
149s Masking low complexity seeds...  [0s]
149s Searching alignments...  [0s]
149s Deallocating memory...  [0s]
149s Processing query block 1, reference block 1/1, shape 5/16, index chunk 1/4.
149s Building reference seed array...  [0.002s]
149s Building query seed array...  [0.002s]
149s Computing hash join...  [0s]
149s Masking low complexity seeds...  [0s]
149s Searching alignments...  [0s]
149s Deallocating memory...  [0s]
149s Processing query block 1, reference block 1/1, shape 5/16, index chunk 2/4.
149s Building reference seed array...  [0.002s]
149s Building query seed array...  [0.002s]
149s Computing hash join...  [0s]
149s Masking low complexity seeds...  [0s]
149s Searching alignments...  [0s]
149s Deallocating memory...  [0s]
149s Processing query block 1, reference block 1/1, shape 5/16, index chunk 3/4.
149s Building reference seed array...  [0.002s]
149s Building query seed array...  [0.002s]
149s Computing hash join...  [0s]
149s Masking low complexity seeds...  [0s]
149s Searching alignments...  [0s]
149s Deallocating memory...  [0s]
149s Processing query block 1, reference block 1/1, shape 5/16, index chunk 4/4.
149s Building reference seed array...  [0.002s]
149s Building query seed array...  [0.002s]
149s Computing hash join...  [0s]
149s Masking low complexity seeds...  [0s]
149s Searching alignments...  [0s]
149s Deallocating memory...  [0s]
149s Processing query block 1, reference block 1/1, shape 6/16, index chunk 1/4.
149s Building reference seed array...  [0.002s]
149s Building query seed array...  [0.002s]
149s Computing hash join...  [0s]
149s Masking low complexity seeds...  [0s]
149s Searching alignments...  [0s]
149s Deallocating memory...  [0s]
149s Processing query block 1, reference block 1/1, shape 6/16, index chunk 2/4.
149s Building reference seed array...  [0.002s]
149s Building query seed array...  [0.002s]
149s Computing hash join...  [0s]
149s Masking low complexity seeds...  [0s]
149s Searching alignments...  [0s]
149s Deallocating memory...  [0s]
149s Processing query block 1, reference block 1/1, shape 6/16, index chunk 3/4.
149s Building reference seed array...  [0.002s]
149s Building query seed array...  [0.002s]
149s Computing hash join...  [0s]
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149s Searching alignments...  [0s]
149s Deallocating memory...  [0s]
149s Processing query block 1, reference block 1/1, shape 6/16, index chunk 4/4.
149s Building reference seed array...  [0.002s]
149s Building query seed array...  [0.002s]
149s Computing hash join...  [0s]
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149s Searching alignments...  [0s]
149s Deallocating memory...  [0s]
149s Processing query block 1, reference block 1/1, shape 7/16, index chunk 1/4.
149s Building reference seed array...  [0.002s]
149s Building query seed array...  [0.002s]
149s Computing hash join...  [0s]
149s Masking low complexity seeds...  [0s]
149s Searching alignments...  [0s]
149s Deallocating memory...  [0s]
149s Processing query block 1, reference block 1/1, shape 7/16, index chunk 2/4.
149s Building reference seed array...  [0.002s]
149s Building query seed array...  [0.002s]
149s Computing hash join...  [0s]
149s Masking low complexity seeds...  [0s]
149s Searching alignments...  [0s]
149s Deallocating memory...  [0s]
149s Processing query block 1, reference block 1/1, shape 7/16, index chunk 3/4.
149s Building reference seed array...  [0.002s]
149s Building query seed array...  [0.002s]
149s Computing hash join...  [0s]
149s Masking low complexity seeds...  [0s]
149s Searching alignments...  [0s]
149s Deallocating memory...  [0s]
149s Processing query block 1, reference block 1/1, shape 7/16, index chunk 4/4.
149s Building reference seed array...  [0.002s]
149s Building query seed array...  [0.002s]
149s Computing hash join...  [0s]
149s Masking low complexity seeds...  [0s]
149s Searching alignments...  [0s]
149s Deallocating memory...  [0s]
149s Processing query block 1, reference block 1/1, shape 8/16, index chunk 1/4.
149s Building reference seed array...  [0.002s]
149s Building query seed array...  [0.002s]
149s Computing hash join...  [0s]
149s Masking low complexity seeds...  [0s]
149s Searching alignments...  [0s]
149s Deallocating memory...  [0s]
149s Processing query block 1, reference block 1/1, shape 8/16, index chunk 2/4.
149s Building reference seed array...  [0.002s]
149s Building query seed array...  [0.002s]
149s Computing hash join...  [0s]
149s Masking low complexity seeds...  [0s]
149s Searching alignments...  [0s]
149s Deallocating memory...  [0s]
149s Processing query block 1, reference block 1/1, shape 8/16, index chunk 3/4.
149s Building reference seed array...  [0.002s]
149s Building query seed array...  [0.003s]
149s Computing hash join...  [0s]
149s Masking low complexity seeds...  [0s]
149s Searching alignments...  [0s]
149s Deallocating memory...  [0s]
149s Processing query block 1, reference block 1/1, shape 8/16, index chunk 4/4.
149s Building reference seed array...  [0.002s]
149s Building query seed array...  [0.002s]
149s Computing hash join...  [0s]
149s Masking low complexity seeds...  [0s]
149s Searching alignments...  [0s]
149s Deallocating memory...  [0s]
149s Processing query block 1, reference block 1/1, shape 9/16, index chunk 1/4.
149s Building reference seed array...  [0.002s]
149s Building query seed array...  [0.002s]
149s Computing hash join...  [0s]
149s Masking low complexity seeds...  [0s]
149s Searching alignments...  [0s]
149s Deallocating memory...  [0s]
149s Processing query block 1, reference block 1/1, shape 9/16, index chunk 2/4.
149s Building reference seed array...  [0.002s]
149s Building query seed array...  [0.002s]
149s Computing hash join...  [0s]
149s Masking low complexity seeds...  [0s]
149s Searching alignments...  [0s]
149s Deallocating memory...  [0s]
149s Processing query block 1, reference block 1/1, shape 9/16, index chunk 3/4.
149s Building reference seed array...  [0.002s]
149s Building query seed array...  [0.002s]
149s Computing hash join...  [0s]
149s Masking low complexity seeds...  [0s]
149s Searching alignments...  [0s]
149s Deallocating memory...  [0s]
149s Processing query block 1, reference block 1/1, shape 9/16, index chunk 4/4.
149s Building reference seed array...  [0.002s]
149s Building query seed array...  [0.002s]
149s Computing hash join...  [0s]
149s Masking low complexity seeds...  [0s]
149s Searching alignments...  [0s]
149s Deallocating memory...  [0s]
149s Processing query block 1, reference block 1/1, shape 10/16, index chunk 1/4.
149s Building reference seed array...  [0.002s]
149s Building query seed array...  [0.002s]
149s Computing hash join...  [0s]
149s Masking low complexity seeds...  [0s]
149s Searching alignments...  [0s]
149s Deallocating memory...  [0s]
149s Processing query block 1, reference block 1/1, shape 10/16, index chunk 2/4.
149s Building reference seed array...  [0.002s]
149s Building query seed array...  [0.002s]
149s Computing hash join...  [0s]
149s Masking low complexity seeds...  [0s]
149s Searching alignments...  [0s]
149s Deallocating memory...  [0s]
149s Processing query block 1, reference block 1/1, shape 10/16, index chunk 3/4.
149s Building reference seed array...  [0.002s]
149s Building query seed array...  [0.002s]
149s Computing hash join...  [0s]
149s Masking low complexity seeds...  [0s]
149s Searching alignments...  [0s]
149s Deallocating memory...  [0s]
149s Processing query block 1, reference block 1/1, shape 10/16, index chunk 4/4.
149s Building reference seed array...  [0.002s]
149s Building query seed array...  [0.002s]
149s Computing hash join...  [0s]
149s Masking low complexity seeds...  [0s]
149s Searching alignments...  [0s]
149s Deallocating memory...  [0s]
149s Processing query block 1, reference block 1/1, shape 11/16, index chunk 1/4.
149s Building reference seed array...  [0.002s]
149s Building query seed array...  [0.002s]
149s Computing hash join...  [0s]
149s Masking low complexity seeds...  [0s]
149s Searching alignments...  [0s]
149s Deallocating memory...  [0s]
149s Processing query block 1, reference block 1/1, shape 11/16, index chunk 2/4.
149s Building reference seed array...  [0.002s]
149s Building query seed array...  [0.002s]
149s Computing hash join...  [0s]
149s Masking low complexity seeds...  [0s]
149s Searching alignments...  [0s]
149s Deallocating memory...  [0s]
149s Processing query block 1, reference block 1/1, shape 11/16, index chunk 3/4.
149s Building reference seed array...  [0.002s]
149s Building query seed array...  [0.002s]
149s Computing hash join...  [0s]
149s Masking low complexity seeds...  [0s]
149s Searching alignments...  [0s]
149s Deallocating memory...  [0s]
149s Processing query block 1, reference block 1/1, shape 11/16, index chunk 4/4.
149s Building reference seed array...  [0.002s]
149s Building query seed array...  [0.002s]
149s Computing hash join...  [0s]
149s Masking low complexity seeds...  [0s]
149s Searching alignments...  [0s]
149s Deallocating memory...  [0s]
149s Processing query block 1, reference block 1/1, shape 12/16, index chunk 1/4.
149s Building reference seed array...  [0.002s]
149s Building query seed array...  [0.002s]
149s Computing hash join...  [0s]
149s Masking low complexity seeds...  [0s]
149s Searching alignments...  [0s]
149s Deallocating memory...  [0s]
149s Processing query block 1, reference block 1/1, shape 12/16, index chunk 2/4.
149s Building reference seed array...  [0.002s]
149s Building query seed array...  [0.002s]
149s Computing hash join...  [0s]
149s Masking low complexity seeds...  [0s]
149s Searching alignments...  [0s]
149s Deallocating memory...  [0s]
149s Processing query block 1, reference block 1/1, shape 12/16, index chunk 3/4.
149s Building reference seed array...  [0.002s]
149s Building query seed array...  [0.002s]
149s Computing hash join...  [0s]
149s Masking low complexity seeds...  [0s]
149s Searching alignments...  [0s]
149s Deallocating memory...  [0s]
149s Processing query block 1, reference block 1/1, shape 12/16, index chunk 4/4.
149s Building reference seed array...  [0.002s]
149s Building query seed array...  [0.002s]
149s Computing hash join...  [0s]
149s Masking low complexity seeds...  [0s]
149s Searching alignments...  [0s]
149s Deallocating memory...  [0s]
149s Processing query block 1, reference block 1/1, shape 13/16, index chunk 1/4.
149s Building reference seed array...  [0.002s]
149s Building query seed array...  [0.002s]
149s Computing hash join...  [0s]
149s Masking low complexity seeds...  [0s]
149s Searching alignments...  [0s]
149s Deallocating memory...  [0s]
149s Processing query block 1, reference block 1/1, shape 13/16, index chunk 2/4.
149s Building reference seed array...  [0.002s]
149s Building query seed array...  [0.002s]
149s Computing hash join...  [0s]
149s Masking low complexity seeds...  [0s]
149s Searching alignments...  [0s]
149s Deallocating memory...  [0s]
149s Processing query block 1, reference block 1/1, shape 13/16, index chunk 3/4.
149s Building reference seed array...  [0.002s]
149s Building query seed array...  [0.002s]
149s Computing hash join...  [0s]
149s Masking low complexity seeds...  [0s]
149s Searching alignments...  [0s]
149s Deallocating memory...  [0s]
149s Processing query block 1, reference block 1/1, shape 13/16, index chunk 4/4.
149s Building reference seed array...  [0.002s]
149s Building query seed array...  [0.002s]
149s Computing hash join...  [0s]
149s Masking low complexity seeds...  [0s]
149s Searching alignments...  [0s]
149s Deallocating memory...  [0s]
149s Processing query block 1, reference block 1/1, shape 14/16, index chunk 1/4.
149s Building reference seed array...  [0.002s]
149s Building query seed array...  [0.002s]
149s Computing hash join...  [0s]
149s Masking low complexity seeds...  [0s]
149s Searching alignments...  [0s]
149s Deallocating memory...  [0s]
149s Processing query block 1, reference block 1/1, shape 14/16, index chunk 2/4.
149s Building reference seed array...  [0.002s]
149s Building query seed array...  [0.002s]
149s Computing hash join...  [0s]
149s Masking low complexity seeds...  [0s]
149s Searching alignments...  [0s]
149s Deallocating memory...  [0s]
149s Processing query block 1, reference block 1/1, shape 14/16, index chunk 3/4.
149s Building reference seed array...  [0.002s]
149s Building query seed array...  [0.002s]
149s Computing hash join...  [0s]
149s Masking low complexity seeds...  [0s]
149s Searching alignments...  [0s]
149s Deallocating memory...  [0s]
149s Processing query block 1, reference block 1/1, shape 14/16, index chunk 4/4.
149s Building reference seed array...  [0.002s]
149s Building query seed array...  [0.002s]
149s Computing hash join...  [0s]
149s Masking low complexity seeds...  [0s]
149s Searching alignments...  [0s]
149s Deallocating memory...  [0s]
149s Processing query block 1, reference block 1/1, shape 15/16, index chunk 1/4.
149s Building reference seed array...  [0.002s]
149s Building query seed array...  [0.002s]
149s Computing hash join...  [0s]
149s Masking low complexity seeds...  [0s]
149s Searching alignments...  [0s]
149s Deallocating memory...  [0s]
149s Processing query block 1, reference block 1/1, shape 15/16, index chunk 2/4.
149s Building reference seed array...  [0.002s]
149s Building query seed array...  [0.002s]
149s Computing hash join...  [0s]
149s Masking low complexity seeds...  [0s]
149s Searching alignments...  [0s]
149s Deallocating memory...  [0s]
149s Processing query block 1, reference block 1/1, shape 15/16, index chunk 3/4.
149s Building reference seed array...  [0.002s]
149s Building query seed array...  [0.002s]
149s Computing hash join...  [0s]
149s Masking low complexity seeds...  [0s]
149s Searching alignments...  [0s]
149s Deallocating memory...  [0s]
149s Processing query block 1, reference block 1/1, shape 15/16, index chunk 4/4.
149s Building reference seed array...  [0.002s]
149s Building query seed array...  [0.002s]
149s Computing hash join...  [0s]
149s Masking low complexity seeds...  [0s]
149s Searching alignments...  [0s]
149s Deallocating memory...  [0s]
149s Processing query block 1, reference block 1/1, shape 16/16, index chunk 1/4.
149s Building reference seed array...  [0.002s]
149s Building query seed array...  [0.002s]
149s Computing hash join...  [0s]
149s Masking low complexity seeds...  [0s]
149s Searching alignments...  [0s]
149s Deallocating memory...  [0s]
149s Processing query block 1, reference block 1/1, shape 16/16, index chunk 2/4.
149s Building reference seed array...  [0.002s]
149s Building query seed array...  [0.002s]
149s Computing hash join...  [0s]
149s Masking low complexity seeds...  [0s]
149s Searching alignments...  [0s]
149s Deallocating memory...  [0s]
149s Processing query block 1, reference block 1/1, shape 16/16, index chunk 3/4.
149s Building reference seed array...  [0.002s]
149s Building query seed array...  [0.002s]
149s Computing hash join...  [0s]
149s Masking low complexity seeds...  [0s]
149s Searching alignments...  [0s]
149s Deallocating memory...  [0s]
149s Processing query block 1, reference block 1/1, shape 16/16, index chunk 4/4.
149s Building reference seed array...  [0.002s]
149s Building query seed array...  [0.002s]
149s Computing hash join...  [0s]
149s Masking low complexity seeds...  [0s]
149s Searching alignments...  [0s]
149s Deallocating memory...  [0s]
149s Deallocating buffers...  [0s]
149s Clearing query masking...  [0s]
149s Computing alignments... Loading trace points...  [0.002s]
149s Sorting trace points...  [0s]
149s Computing alignments...  [0.136s]
149s Deallocating buffers...  [0s]
149s Loading trace points...  [0s]
149s  [0.14s]
149s Deallocating reference...  [0s]
149s Loading reference sequences...  [0s]
149s Deallocating buffers...  [0s]
149s Deallocating queries...  [0s]
149s Loading query sequences...  [0s]
149s Closing the input file...  [0s]
149s Closing the output file...  [0s]
149s Closing the database...  [0s]
149s Cleaning up...  [0s]
149s Total time = 0.672s
149s Reported 77 pairwise alignments, 77 HSPs.
149s 72 queries aligned.
149s + diamond blastp --threads 1 --db test/E.faa.diamond --query test/C.faa --out /tmp/tmp.gdxNHDneSh/C.faa.vs.E.faa.diamond -e 1e-05 --outfmt 6 --sensitive
149s diamond v2.1.9.163 (C) Max Planck Society for the Advancement of Science, Benjamin Buchfink, University of Tuebingen
149s Documentation, support and updates available at http://www.diamondsearch.org
149s Please cite: http://dx.doi.org/10.1038/s41592-021-01101-x Nature Methods (2021)
149s 
149s #CPU threads: 1
149s Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1)
149s Temporary directory: /tmp/tmp.gdxNHDneSh
149s #Target sequences to report alignments for: 25
149s Opening the database...  [0s]
149s Database: test/E.faa.diamond (type: Diamond database, sequences: 72, letters: 54509)
149s Block size = 2000000000
149s Opening the input file...  [0s]
149s Opening the output file...  [0s]
149s Loading query sequences...  [0s]
149s Masking queries...  [0.014s]
149s Algorithm: Double-indexed
149s Building query histograms...  [0.012s]
149s Seeking in database...  [0s]
149s Loading reference sequences...  [0s]
149s Masking reference...  [0.011s]
149s Initializing temporary storage...  [0s]
149s Building reference histograms...  [0.013s]
149s Allocating buffers...  [0s]
149s Processing query block 1, reference block 1/1, shape 1/16, index chunk 1/4.
149s Building reference seed array...  [0.002s]
149s Building query seed array...  [0.002s]
149s Computing hash join...  [0s]
149s Masking low complexity seeds...  [0s]
149s Searching alignments...  [0s]
149s Deallocating memory...  [0s]
149s Processing query block 1, reference block 1/1, shape 1/16, index chunk 2/4.
149s Building reference seed array...  [0.002s]
149s Building query seed array...  [0.002s]
149s Computing hash join...  [0s]
149s Masking low complexity seeds...  [0s]
149s Searching alignments...  [0s]
149s Deallocating memory...  [0s]
149s Processing query block 1, reference block 1/1, shape 1/16, index chunk 3/4.
149s Building reference seed array...  [0.002s]
149s Building query seed array...  [0.002s]
149s Computing hash join...  [0s]
149s Masking low complexity seeds...  [0s]
149s Searching alignments...  [0s]
149s Deallocating memory...  [0s]
149s Processing query block 1, reference block 1/1, shape 1/16, index chunk 4/4.
149s Building reference seed array...  [0.002s]
149s Building query seed array...  [0.002s]
149s Computing hash join...  [0s]
149s Masking low complexity seeds...  [0s]
149s Searching alignments...  [0s]
149s Deallocating memory...  [0s]
149s Processing query block 1, reference block 1/1, shape 2/16, index chunk 1/4.
149s Building reference seed array...  [0.002s]
149s Building query seed array...  [0.002s]
149s Computing hash join...  [0s]
149s Masking low complexity seeds...  [0s]
149s Searching alignments...  [0s]
149s Deallocating memory...  [0s]
149s Processing query block 1, reference block 1/1, shape 2/16, index chunk 2/4.
149s Building reference seed array...  [0.002s]
149s Building query seed array...  [0.002s]
149s Computing hash join...  [0s]
149s Masking low complexity seeds...  [0s]
149s Searching alignments...  [0s]
149s Deallocating memory...  [0s]
149s Processing query block 1, reference block 1/1, shape 2/16, index chunk 3/4.
149s Building reference seed array...  [0.002s]
149s Building query seed array...  [0.002s]
149s Computing hash join...  [0s]
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149s Searching alignments...  [0s]
149s Deallocating memory...  [0s]
149s Processing query block 1, reference block 1/1, shape 2/16, index chunk 4/4.
149s Building reference seed array...  [0.002s]
149s Building query seed array...  [0.002s]
149s Computing hash join...  [0s]
149s Masking low complexity seeds...  [0s]
149s Searching alignments...  [0s]
149s Deallocating memory...  [0s]
149s Processing query block 1, reference block 1/1, shape 3/16, index chunk 1/4.
149s Building reference seed array...  [0.002s]
149s Building query seed array...  [0.002s]
149s Computing hash join...  [0s]
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149s Searching alignments...  [0s]
149s Deallocating memory...  [0s]
149s Processing query block 1, reference block 1/1, shape 3/16, index chunk 2/4.
149s Building reference seed array...  [0.002s]
149s Building query seed array...  [0.002s]
149s Computing hash join...  [0s]
149s Masking low complexity seeds...  [0s]
149s Searching alignments...  [0s]
149s Deallocating memory...  [0s]
149s Processing query block 1, reference block 1/1, shape 3/16, index chunk 3/4.
149s Building reference seed array...  [0.002s]
149s Building query seed array...  [0.002s]
149s Computing hash join...  [0s]
149s Masking low complexity seeds...  [0s]
149s Searching alignments...  [0s]
149s Deallocating memory...  [0s]
149s Processing query block 1, reference block 1/1, shape 3/16, index chunk 4/4.
149s Building reference seed array...  [0.002s]
149s Building query seed array...  [0.002s]
149s Computing hash join...  [0s]
149s Masking low complexity seeds...  [0s]
149s Searching alignments...  [0s]
149s Deallocating memory...  [0s]
149s Processing query block 1, reference block 1/1, shape 4/16, index chunk 1/4.
149s Building reference seed array...  [0.002s]
149s Building query seed array...  [0.002s]
149s Computing hash join...  [0s]
149s Masking low complexity seeds...  [0s]
149s Searching alignments...  [0s]
149s Deallocating memory...  [0s]
149s Processing query block 1, reference block 1/1, shape 4/16, index chunk 2/4.
149s Building reference seed array...  [0.002s]
149s Building query seed array...  [0.002s]
149s Computing hash join...  [0s]
149s Masking low complexity seeds...  [0s]
149s Searching alignments...  [0s]
149s Deallocating memory...  [0s]
149s Processing query block 1, reference block 1/1, shape 4/16, index chunk 3/4.
149s Building reference seed array...  [0.002s]
149s Building query seed array...  [0.002s]
149s Computing hash join...  [0s]
149s Masking low complexity seeds...  [0s]
149s Searching alignments...  [0s]
149s Deallocating memory...  [0s]
149s Processing query block 1, reference block 1/1, shape 4/16, index chunk 4/4.
149s Building reference seed array...  [0.002s]
149s Building query seed array...  [0.002s]
149s Computing hash join...  [0s]
149s Masking low complexity seeds...  [0s]
149s Searching alignments...  [0s]
149s Deallocating memory...  [0s]
149s Processing query block 1, reference block 1/1, shape 5/16, index chunk 1/4.
149s Building reference seed array...  [0.002s]
150s Building query seed array...  [0.002s]
150s Computing hash join...  [0s]
150s Masking low complexity seeds...  [0s]
150s Searching alignments...  [0s]
150s Deallocating memory...  [0s]
150s Processing query block 1, reference block 1/1, shape 5/16, index chunk 2/4.
150s Building reference seed array...  [0.002s]
150s Building query seed array...  [0.002s]
150s Computing hash join...  [0s]
150s Masking low complexity seeds...  [0s]
150s Searching alignments...  [0s]
150s Deallocating memory...  [0s]
150s Processing query block 1, reference block 1/1, shape 5/16, index chunk 3/4.
150s Building reference seed array...  [0.002s]
150s Building query seed array...  [0.002s]
150s Computing hash join...  [0s]
150s Masking low complexity seeds...  [0s]
150s Searching alignments...  [0s]
150s Deallocating memory...  [0s]
150s Processing query block 1, reference block 1/1, shape 5/16, index chunk 4/4.
150s Building reference seed array...  [0.002s]
150s Building query seed array...  [0.002s]
150s Computing hash join...  [0s]
150s Masking low complexity seeds...  [0s]
150s Searching alignments...  [0s]
150s Deallocating memory...  [0s]
150s Processing query block 1, reference block 1/1, shape 6/16, index chunk 1/4.
150s Building reference seed array...  [0.002s]
150s Building query seed array...  [0.002s]
150s Computing hash join...  [0s]
150s Masking low complexity seeds...  [0s]
150s Searching alignments...  [0s]
150s Deallocating memory...  [0s]
150s Processing query block 1, reference block 1/1, shape 6/16, index chunk 2/4.
150s Building reference seed array...  [0.002s]
150s Building query seed array...  [0.002s]
150s Computing hash join...  [0s]
150s Masking low complexity seeds...  [0s]
150s Searching alignments...  [0s]
150s Deallocating memory...  [0s]
150s Processing query block 1, reference block 1/1, shape 6/16, index chunk 3/4.
150s Building reference seed array...  [0.002s]
150s Building query seed array...  [0.002s]
150s Computing hash join...  [0s]
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150s Searching alignments...  [0s]
150s Deallocating memory...  [0s]
150s Processing query block 1, reference block 1/1, shape 6/16, index chunk 4/4.
150s Building reference seed array...  [0.002s]
150s Building query seed array...  [0.002s]
150s Computing hash join...  [0s]
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150s Searching alignments...  [0s]
150s Deallocating memory...  [0s]
150s Processing query block 1, reference block 1/1, shape 7/16, index chunk 1/4.
150s Building reference seed array...  [0.002s]
150s Building query seed array...  [0.002s]
150s Computing hash join...  [0s]
150s Masking low complexity seeds...  [0s]
150s Searching alignments...  [0s]
150s Deallocating memory...  [0s]
150s Processing query block 1, reference block 1/1, shape 7/16, index chunk 2/4.
150s Building reference seed array...  [0.002s]
150s Building query seed array...  [0.002s]
150s Computing hash join...  [0s]
150s Masking low complexity seeds...  [0s]
150s Searching alignments...  [0s]
150s Deallocating memory...  [0s]
150s Processing query block 1, reference block 1/1, shape 7/16, index chunk 3/4.
150s Building reference seed array...  [0.002s]
150s Building query seed array...  [0.002s]
150s Computing hash join...  [0s]
150s Masking low complexity seeds...  [0s]
150s Searching alignments...  [0s]
150s Deallocating memory...  [0s]
150s Processing query block 1, reference block 1/1, shape 7/16, index chunk 4/4.
150s Building reference seed array...  [0.002s]
150s Building query seed array...  [0.002s]
150s Computing hash join...  [0s]
150s Masking low complexity seeds...  [0s]
150s Searching alignments...  [0s]
150s Deallocating memory...  [0s]
150s Processing query block 1, reference block 1/1, shape 8/16, index chunk 1/4.
150s Building reference seed array...  [0.002s]
150s Building query seed array...  [0.002s]
150s Computing hash join...  [0s]
150s Masking low complexity seeds...  [0s]
150s Searching alignments...  [0s]
150s Deallocating memory...  [0s]
150s Processing query block 1, reference block 1/1, shape 8/16, index chunk 2/4.
150s Building reference seed array...  [0.002s]
150s Building query seed array...  [0.002s]
150s Computing hash join...  [0s]
150s Masking low complexity seeds...  [0s]
150s Searching alignments...  [0s]
150s Deallocating memory...  [0s]
150s Processing query block 1, reference block 1/1, shape 8/16, index chunk 3/4.
150s Building reference seed array...  [0.002s]
150s Building query seed array...  [0.002s]
150s Computing hash join...  [0s]
150s Masking low complexity seeds...  [0s]
150s Searching alignments...  [0s]
150s Deallocating memory...  [0s]
150s Processing query block 1, reference block 1/1, shape 8/16, index chunk 4/4.
150s Building reference seed array...  [0.002s]
150s Building query seed array...  [0.002s]
150s Computing hash join...  [0s]
150s Masking low complexity seeds...  [0s]
150s Searching alignments...  [0s]
150s Deallocating memory...  [0s]
150s Processing query block 1, reference block 1/1, shape 9/16, index chunk 1/4.
150s Building reference seed array...  [0.002s]
150s Building query seed array...  [0.002s]
150s Computing hash join...  [0s]
150s Masking low complexity seeds...  [0s]
150s Searching alignments...  [0s]
150s Deallocating memory...  [0s]
150s Processing query block 1, reference block 1/1, shape 9/16, index chunk 2/4.
150s Building reference seed array...  [0.002s]
150s Building query seed array...  [0.002s]
150s Computing hash join...  [0s]
150s Masking low complexity seeds...  [0s]
150s Searching alignments...  [0s]
150s Deallocating memory...  [0s]
150s Processing query block 1, reference block 1/1, shape 9/16, index chunk 3/4.
150s Building reference seed array...  [0.002s]
150s Building query seed array...  [0.002s]
150s Computing hash join...  [0s]
150s Masking low complexity seeds...  [0s]
150s Searching alignments...  [0s]
150s Deallocating memory...  [0s]
150s Processing query block 1, reference block 1/1, shape 9/16, index chunk 4/4.
150s Building reference seed array...  [0.002s]
150s Building query seed array...  [0.002s]
150s Computing hash join...  [0s]
150s Masking low complexity seeds...  [0s]
150s Searching alignments...  [0s]
150s Deallocating memory...  [0s]
150s Processing query block 1, reference block 1/1, shape 10/16, index chunk 1/4.
150s Building reference seed array...  [0.002s]
150s Building query seed array...  [0.002s]
150s Computing hash join...  [0s]
150s Masking low complexity seeds...  [0s]
150s Searching alignments...  [0s]
150s Deallocating memory...  [0s]
150s Processing query block 1, reference block 1/1, shape 10/16, index chunk 2/4.
150s Building reference seed array...  [0.002s]
150s Building query seed array...  [0.002s]
150s Computing hash join...  [0s]
150s Masking low complexity seeds...  [0s]
150s Searching alignments...  [0s]
150s Deallocating memory...  [0s]
150s Processing query block 1, reference block 1/1, shape 10/16, index chunk 3/4.
150s Building reference seed array...  [0.002s]
150s Building query seed array...  [0.002s]
150s Computing hash join...  [0s]
150s Masking low complexity seeds...  [0s]
150s Searching alignments...  [0s]
150s Deallocating memory...  [0s]
150s Processing query block 1, reference block 1/1, shape 10/16, index chunk 4/4.
150s Building reference seed array...  [0.002s]
150s Building query seed array...  [0.002s]
150s Computing hash join...  [0s]
150s Masking low complexity seeds...  [0s]
150s Searching alignments...  [0s]
150s Deallocating memory...  [0s]
150s Processing query block 1, reference block 1/1, shape 11/16, index chunk 1/4.
150s Building reference seed array...  [0.002s]
150s Building query seed array...  [0.002s]
150s Computing hash join...  [0s]
150s Masking low complexity seeds...  [0s]
150s Searching alignments...  [0s]
150s Deallocating memory...  [0s]
150s Processing query block 1, reference block 1/1, shape 11/16, index chunk 2/4.
150s Building reference seed array...  [0.002s]
150s Building query seed array...  [0.002s]
150s Computing hash join...  [0s]
150s Masking low complexity seeds...  [0s]
150s Searching alignments...  [0s]
150s Deallocating memory...  [0s]
150s Processing query block 1, reference block 1/1, shape 11/16, index chunk 3/4.
150s Building reference seed array...  [0.002s]
150s Building query seed array...  [0.002s]
150s Computing hash join...  [0s]
150s Masking low complexity seeds...  [0s]
150s Searching alignments...  [0s]
150s Deallocating memory...  [0s]
150s Processing query block 1, reference block 1/1, shape 11/16, index chunk 4/4.
150s Building reference seed array...  [0.002s]
150s Building query seed array...  [0.002s]
150s Computing hash join...  [0s]
150s Masking low complexity seeds...  [0s]
150s Searching alignments...  [0s]
150s Deallocating memory...  [0s]
150s Processing query block 1, reference block 1/1, shape 12/16, index chunk 1/4.
150s Building reference seed array...  [0.002s]
150s Building query seed array...  [0.002s]
150s Computing hash join...  [0s]
150s Masking low complexity seeds...  [0s]
150s Searching alignments...  [0s]
150s Deallocating memory...  [0s]
150s Processing query block 1, reference block 1/1, shape 12/16, index chunk 2/4.
150s Building reference seed array...  [0.002s]
150s Building query seed array...  [0.002s]
150s Computing hash join...  [0s]
150s Masking low complexity seeds...  [0s]
150s Searching alignments...  [0s]
150s Deallocating memory...  [0s]
150s Processing query block 1, reference block 1/1, shape 12/16, index chunk 3/4.
150s Building reference seed array...  [0.002s]
150s Building query seed array...  [0.002s]
150s Computing hash join...  [0s]
150s Masking low complexity seeds...  [0s]
150s Searching alignments...  [0s]
150s Deallocating memory...  [0s]
150s Processing query block 1, reference block 1/1, shape 12/16, index chunk 4/4.
150s Building reference seed array...  [0.002s]
150s Building query seed array...  [0.002s]
150s Computing hash join...  [0s]
150s Masking low complexity seeds...  [0s]
150s Searching alignments...  [0s]
150s Deallocating memory...  [0s]
150s Processing query block 1, reference block 1/1, shape 13/16, index chunk 1/4.
150s Building reference seed array...  [0.002s]
150s Building query seed array...  [0.002s]
150s Computing hash join...  [0s]
150s Masking low complexity seeds...  [0s]
150s Searching alignments...  [0s]
150s Deallocating memory...  [0s]
150s Processing query block 1, reference block 1/1, shape 13/16, index chunk 2/4.
150s Building reference seed array...  [0.002s]
150s Building query seed array...  [0.002s]
150s Computing hash join...  [0s]
150s Masking low complexity seeds...  [0s]
150s Searching alignments...  [0s]
150s Deallocating memory...  [0s]
150s Processing query block 1, reference block 1/1, shape 13/16, index chunk 3/4.
150s Building reference seed array...  [0.002s]
150s Building query seed array...  [0.002s]
150s Computing hash join...  [0s]
150s Masking low complexity seeds...  [0s]
150s Searching alignments...  [0s]
150s Deallocating memory...  [0s]
150s Processing query block 1, reference block 1/1, shape 13/16, index chunk 4/4.
150s Building reference seed array...  [0.002s]
150s Building query seed array...  [0.002s]
150s Computing hash join...  [0s]
150s Masking low complexity seeds...  [0s]
150s Searching alignments...  [0s]
150s Deallocating memory...  [0s]
150s Processing query block 1, reference block 1/1, shape 14/16, index chunk 1/4.
150s Building reference seed array...  [0.002s]
150s Building query seed array...  [0.002s]
150s Computing hash join...  [0s]
150s Masking low complexity seeds...  [0s]
150s Searching alignments...  [0s]
150s Deallocating memory...  [0s]
150s Processing query block 1, reference block 1/1, shape 14/16, index chunk 2/4.
150s Building reference seed array...  [0.002s]
150s Building query seed array...  [0.002s]
150s Computing hash join...  [0s]
150s Masking low complexity seeds...  [0s]
150s Searching alignments...  [0s]
150s Deallocating memory...  [0s]
150s Processing query block 1, reference block 1/1, shape 14/16, index chunk 3/4.
150s Building reference seed array...  [0.002s]
150s Building query seed array...  [0.002s]
150s Computing hash join...  [0s]
150s Masking low complexity seeds...  [0s]
150s Searching alignments...  [0s]
150s Deallocating memory...  [0s]
150s Processing query block 1, reference block 1/1, shape 14/16, index chunk 4/4.
150s Building reference seed array...  [0.002s]
150s Building query seed array...  [0.002s]
150s Computing hash join...  [0s]
150s Masking low complexity seeds...  [0s]
150s Searching alignments...  [0s]
150s Deallocating memory...  [0s]
150s Processing query block 1, reference block 1/1, shape 15/16, index chunk 1/4.
150s Building reference seed array...  [0.002s]
150s Building query seed array...  [0.002s]
150s Computing hash join...  [0s]
150s Masking low complexity seeds...  [0s]
150s Searching alignments...  [0s]
150s Deallocating memory...  [0s]
150s Processing query block 1, reference block 1/1, shape 15/16, index chunk 2/4.
150s Building reference seed array...  [0.002s]
150s Building query seed array...  [0.002s]
150s Computing hash join...  [0s]
150s Masking low complexity seeds...  [0s]
150s Searching alignments...  [0s]
150s Deallocating memory...  [0s]
150s Processing query block 1, reference block 1/1, shape 15/16, index chunk 3/4.
150s Building reference seed array...  [0.002s]
150s Building query seed array...  [0.002s]
150s Computing hash join...  [0s]
150s Masking low complexity seeds...  [0s]
150s Searching alignments...  [0s]
150s Deallocating memory...  [0s]
150s Processing query block 1, reference block 1/1, shape 15/16, index chunk 4/4.
150s Building reference seed array...  [0.002s]
150s Building query seed array...  [0.002s]
150s Computing hash join...  [0s]
150s Masking low complexity seeds...  [0s]
150s Searching alignments...  [0s]
150s Deallocating memory...  [0s]
150s Processing query block 1, reference block 1/1, shape 16/16, index chunk 1/4.
150s Building reference seed array...  [0.002s]
150s Building query seed array...  [0.002s]
150s Computing hash join...  [0s]
150s Masking low complexity seeds...  [0s]
150s Searching alignments...  [0s]
150s Deallocating memory...  [0s]
150s Processing query block 1, reference block 1/1, shape 16/16, index chunk 2/4.
150s Building reference seed array...  [0.002s]
150s Building query seed array...  [0.002s]
150s Computing hash join...  [0s]
150s Masking low complexity seeds...  [0s]
150s Searching alignments...  [0s]
150s Deallocating memory...  [0s]
150s Processing query block 1, reference block 1/1, shape 16/16, index chunk 3/4.
150s Building reference seed array...  [0.002s]
150s Building query seed array...  [0.002s]
150s Computing hash join...  [0s]
150s Masking low complexity seeds...  [0s]
150s Searching alignments...  [0s]
150s Deallocating memory...  [0s]
150s Processing query block 1, reference block 1/1, shape 16/16, index chunk 4/4.
150s Building reference seed array...  [0.002s]
150s Building query seed array...  [0.002s]
150s Computing hash join...  [0s]
150s Masking low complexity seeds...  [0s]
150s Searching alignments...  [0s]
150s Deallocating memory...  [0s]
150s Deallocating buffers...  [0s]
150s Clearing query masking...  [0s]
150s Computing alignments... Loading trace points...  [0s]
150s Sorting trace points...  [0s]
150s Computing alignments...  [0.093s]
150s Deallocating buffers...  [0s]
150s Loading trace points...  [0s]
150s  [0.094s]
150s Deallocating reference...  [0s]
150s Loading reference sequences...  [0s]
150s Deallocating buffers...  [0s]
150s Deallocating queries...  [0s]
150s Loading query sequences...  [0s]
150s Closing the input file...  [0s]
150s Closing the output file...  [0s]
150s Closing the database...  [0s]
150s Cleaning up...  [0s]
150s Total time = 0.622s
150s Reported 41 pairwise alignments, 41 HSPs.
150s 15 queries aligned.
150s + diamond blastp --threads 1 --db test/C.faa.diamond --query test/L.faa --out /tmp/tmp.gdxNHDneSh/L.faa.vs.C.faa.diamond -e 1e-05 --outfmt 6 --sensitive
150s diamond v2.1.9.163 (C) Max Planck Society for the Advancement of Science, Benjamin Buchfink, University of Tuebingen
150s Documentation, support and updates available at http://www.diamondsearch.org
150s Please cite: http://dx.doi.org/10.1038/s41592-021-01101-x Nature Methods (2021)
150s 
150s #CPU threads: 1
150s Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1)
150s Temporary directory: /tmp/tmp.gdxNHDneSh
150s #Target sequences to report alignments for: 25
150s Opening the database...  [0s]
150s Database: test/C.faa.diamond (type: Diamond database, sequences: 109, letters: 51213)
150s Block size = 2000000000
150s Opening the input file...  [0s]
150s Opening the output file...  [0s]
150s Loading query sequences...  [0s]
150s Masking queries...  [0.008s]
150s Algorithm: Double-indexed
150s Building query histograms...  [0.006s]
150s Seeking in database...  [0s]
150s Loading reference sequences...  [0s]
150s Masking reference...  [0.011s]
150s Initializing temporary storage...  [0s]
150s Building reference histograms...  [0.012s]
150s Allocating buffers...  [0s]
150s Processing query block 1, reference block 1/1, shape 1/16, index chunk 1/4.
150s Building reference seed array...  [0.002s]
150s Building query seed array...  [0.001s]
150s Computing hash join...  [0s]
150s Masking low complexity seeds...  [0s]
150s Searching alignments...  [0s]
150s Deallocating memory...  [0s]
150s Processing query block 1, reference block 1/1, shape 1/16, index chunk 2/4.
150s Building reference seed array...  [0.002s]
150s Building query seed array...  [0.002s]
150s Computing hash join...  [0s]
150s Masking low complexity seeds...  [0s]
150s Searching alignments...  [0s]
150s Deallocating memory...  [0s]
150s Processing query block 1, reference block 1/1, shape 1/16, index chunk 3/4.
150s Building reference seed array...  [0.003s]
150s Building query seed array...  [0.001s]
150s Computing hash join...  [0s]
150s Masking low complexity seeds...  [0s]
150s Searching alignments...  [0s]
150s Deallocating memory...  [0s]
150s Processing query block 1, reference block 1/1, shape 1/16, index chunk 4/4.
150s Building reference seed array...  [0.002s]
150s Building query seed array...  [0.001s]
150s Computing hash join...  [0s]
150s Masking low complexity seeds...  [0s]
150s Searching alignments...  [0s]
150s Deallocating memory...  [0s]
150s Processing query block 1, reference block 1/1, shape 2/16, index chunk 1/4.
150s Building reference seed array...  [0.002s]
150s Building query seed array...  [0.001s]
150s Computing hash join...  [0s]
150s Masking low complexity seeds...  [0s]
150s Searching alignments...  [0s]
150s Deallocating memory...  [0s]
150s Processing query block 1, reference block 1/1, shape 2/16, index chunk 2/4.
150s Building reference seed array...  [0.002s]
150s Building query seed array...  [0.001s]
150s Computing hash join...  [0s]
150s Masking low complexity seeds...  [0s]
150s Searching alignments...  [0s]
150s Deallocating memory...  [0s]
150s Processing query block 1, reference block 1/1, shape 2/16, index chunk 3/4.
150s Building reference seed array...  [0.002s]
150s Building query seed array...  [0.001s]
150s Computing hash join...  [0s]
150s Masking low complexity seeds...  [0s]
150s Searching alignments...  [0s]
150s Deallocating memory...  [0s]
150s Processing query block 1, reference block 1/1, shape 2/16, index chunk 4/4.
150s Building reference seed array...  [0.002s]
150s Building query seed array...  [0.001s]
150s Computing hash join...  [0s]
150s Masking low complexity seeds...  [0s]
150s Searching alignments...  [0s]
150s Deallocating memory...  [0s]
150s Processing query block 1, reference block 1/1, shape 3/16, index chunk 1/4.
150s Building reference seed array...  [0.002s]
150s Building query seed array...  [0.001s]
150s Computing hash join...  [0s]
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150s Searching alignments...  [0s]
150s Deallocating memory...  [0s]
150s Processing query block 1, reference block 1/1, shape 3/16, index chunk 2/4.
150s Building reference seed array...  [0.002s]
150s Building query seed array...  [0.001s]
150s Computing hash join...  [0s]
150s Masking low complexity seeds...  [0s]
150s Searching alignments...  [0s]
150s Deallocating memory...  [0s]
150s Processing query block 1, reference block 1/1, shape 3/16, index chunk 3/4.
150s Building reference seed array...  [0.002s]
150s Building query seed array...  [0.001s]
150s Computing hash join...  [0s]
150s Masking low complexity seeds...  [0s]
150s Searching alignments...  [0s]
150s Deallocating memory...  [0s]
150s Processing query block 1, reference block 1/1, shape 3/16, index chunk 4/4.
150s Building reference seed array...  [0.002s]
150s Building query seed array...  [0.001s]
150s Computing hash join...  [0s]
150s Masking low complexity seeds...  [0s]
150s Searching alignments...  [0s]
150s Deallocating memory...  [0s]
150s Processing query block 1, reference block 1/1, shape 4/16, index chunk 1/4.
150s Building reference seed array...  [0.002s]
150s Building query seed array...  [0.001s]
150s Computing hash join...  [0s]
150s Masking low complexity seeds...  [0s]
150s Searching alignments...  [0s]
150s Deallocating memory...  [0s]
150s Processing query block 1, reference block 1/1, shape 4/16, index chunk 2/4.
150s Building reference seed array...  [0.002s]
150s Building query seed array...  [0.001s]
150s Computing hash join...  [0s]
150s Masking low complexity seeds...  [0s]
150s Searching alignments...  [0s]
150s Deallocating memory...  [0s]
150s Processing query block 1, reference block 1/1, shape 4/16, index chunk 3/4.
150s Building reference seed array...  [0.002s]
150s Building query seed array...  [0.001s]
150s Computing hash join...  [0s]
150s Masking low complexity seeds...  [0s]
150s Searching alignments...  [0s]
150s Deallocating memory...  [0s]
150s Processing query block 1, reference block 1/1, shape 4/16, index chunk 4/4.
150s Building reference seed array...  [0.002s]
150s Building query seed array...  [0.001s]
150s Computing hash join...  [0s]
150s Masking low complexity seeds...  [0s]
150s Searching alignments...  [0s]
150s Deallocating memory...  [0s]
150s Processing query block 1, reference block 1/1, shape 5/16, index chunk 1/4.
150s Building reference seed array...  [0.002s]
150s Building query seed array...  [0.001s]
150s Computing hash join...  [0s]
150s Masking low complexity seeds...  [0s]
150s Searching alignments...  [0s]
150s Deallocating memory...  [0s]
150s Processing query block 1, reference block 1/1, shape 5/16, index chunk 2/4.
150s Building reference seed array...  [0.002s]
150s Building query seed array...  [0.001s]
150s Computing hash join...  [0s]
150s Masking low complexity seeds...  [0s]
150s Searching alignments...  [0s]
150s Deallocating memory...  [0s]
150s Processing query block 1, reference block 1/1, shape 5/16, index chunk 3/4.
150s Building reference seed array...  [0.002s]
150s Building query seed array...  [0.001s]
150s Computing hash join...  [0s]
150s Masking low complexity seeds...  [0s]
150s Searching alignments...  [0s]
150s Deallocating memory...  [0s]
150s Processing query block 1, reference block 1/1, shape 5/16, index chunk 4/4.
150s Building reference seed array...  [0.002s]
150s Building query seed array...  [0.001s]
150s Computing hash join...  [0s]
150s Masking low complexity seeds...  [0s]
150s Searching alignments...  [0s]
150s Deallocating memory...  [0s]
150s Processing query block 1, reference block 1/1, shape 6/16, index chunk 1/4.
150s Building reference seed array...  [0.002s]
150s Building query seed array...  [0.001s]
150s Computing hash join...  [0s]
150s Masking low complexity seeds...  [0s]
150s Searching alignments...  [0s]
150s Deallocating memory...  [0s]
150s Processing query block 1, reference block 1/1, shape 6/16, index chunk 2/4.
150s Building reference seed array...  [0.002s]
150s Building query seed array...  [0.001s]
150s Computing hash join...  [0s]
150s Masking low complexity seeds...  [0s]
150s Searching alignments...  [0s]
150s Deallocating memory...  [0s]
150s Processing query block 1, reference block 1/1, shape 6/16, index chunk 3/4.
150s Building reference seed array...  [0.002s]
150s Building query seed array...  [0.001s]
150s Computing hash join...  [0s]
150s Masking low complexity seeds...  [0s]
150s Searching alignments...  [0s]
150s Deallocating memory...  [0s]
150s Processing query block 1, reference block 1/1, shape 6/16, index chunk 4/4.
150s Building reference seed array...  [0.002s]
150s Building query seed array...  [0.001s]
150s Computing hash join...  [0.001s]
150s Masking low complexity seeds...  [0s]
150s Searching alignments...  [0s]
150s Deallocating memory...  [0s]
150s Processing query block 1, reference block 1/1, shape 7/16, index chunk 1/4.
150s Building reference seed array...  [0.002s]
150s Building query seed array...  [0.001s]
150s Computing hash join...  [0s]
150s Masking low complexity seeds...  [0s]
150s Searching alignments...  [0s]
150s Deallocating memory...  [0s]
150s Processing query block 1, reference block 1/1, shape 7/16, index chunk 2/4.
150s Building reference seed array...  [0.002s]
150s Building query seed array...  [0.001s]
150s Computing hash join...  [0s]
150s Masking low complexity seeds...  [0s]
150s Searching alignments...  [0s]
150s Deallocating memory...  [0s]
150s Processing query block 1, reference block 1/1, shape 7/16, index chunk 3/4.
150s Building reference seed array...  [0.002s]
150s Building query seed array...  [0.001s]
150s Computing hash join...  [0s]
150s Masking low complexity seeds...  [0s]
150s Searching alignments...  [0s]
150s Deallocating memory...  [0s]
150s Processing query block 1, reference block 1/1, shape 7/16, index chunk 4/4.
150s Building reference seed array...  [0.002s]
150s Building query seed array...  [0.001s]
150s Computing hash join...  [0s]
150s Masking low complexity seeds...  [0s]
150s Searching alignments...  [0s]
150s Deallocating memory...  [0s]
150s Processing query block 1, reference block 1/1, shape 8/16, index chunk 1/4.
150s Building reference seed array...  [0.002s]
150s Building query seed array...  [0.001s]
150s Computing hash join...  [0s]
150s Masking low complexity seeds...  [0s]
150s Searching alignments...  [0s]
150s Deallocating memory...  [0s]
150s Processing query block 1, reference block 1/1, shape 8/16, index chunk 2/4.
150s Building reference seed array...  [0.002s]
150s Building query seed array...  [0.001s]
150s Computing hash join...  [0s]
150s Masking low complexity seeds...  [0s]
150s Searching alignments...  [0s]
150s Deallocating memory...  [0s]
150s Processing query block 1, reference block 1/1, shape 8/16, index chunk 3/4.
150s Building reference seed array...  [0.002s]
150s Building query seed array...  [0.001s]
150s Computing hash join...  [0s]
150s Masking low complexity seeds...  [0s]
150s Searching alignments...  [0s]
150s Deallocating memory...  [0s]
150s Processing query block 1, reference block 1/1, shape 8/16, index chunk 4/4.
150s Building reference seed array...  [0.002s]
150s Building query seed array...  [0.001s]
150s Computing hash join...  [0s]
150s Masking low complexity seeds...  [0s]
150s Searching alignments...  [0s]
150s Deallocating memory...  [0s]
150s Processing query block 1, reference block 1/1, shape 9/16, index chunk 1/4.
150s Building reference seed array...  [0.002s]
150s Building query seed array...  [0.001s]
150s Computing hash join...  [0s]
150s Masking low complexity seeds...  [0s]
150s Searching alignments...  [0s]
150s Deallocating memory...  [0s]
150s Processing query block 1, reference block 1/1, shape 9/16, index chunk 2/4.
150s Building reference seed array...  [0.002s]
150s Building query seed array...  [0.001s]
150s Computing hash join...  [0s]
150s Masking low complexity seeds...  [0s]
150s Searching alignments...  [0s]
150s Deallocating memory...  [0s]
150s Processing query block 1, reference block 1/1, shape 9/16, index chunk 3/4.
150s Building reference seed array...  [0.002s]
150s Building query seed array...  [0.001s]
150s Computing hash join...  [0s]
150s Masking low complexity seeds...  [0s]
150s Searching alignments...  [0s]
150s Deallocating memory...  [0s]
150s Processing query block 1, reference block 1/1, shape 9/16, index chunk 4/4.
150s Building reference seed array...  [0.002s]
150s Building query seed array...  [0.001s]
150s Computing hash join...  [0s]
150s Masking low complexity seeds...  [0s]
150s Searching alignments...  [0s]
150s Deallocating memory...  [0s]
150s Processing query block 1, reference block 1/1, shape 10/16, index chunk 1/4.
150s Building reference seed array...  [0.002s]
150s Building query seed array...  [0.001s]
150s Computing hash join...  [0s]
150s Masking low complexity seeds...  [0s]
150s Searching alignments...  [0s]
150s Deallocating memory...  [0s]
150s Processing query block 1, reference block 1/1, shape 10/16, index chunk 2/4.
150s Building reference seed array...  [0.002s]
150s Building query seed array...  [0.001s]
150s Computing hash join...  [0s]
150s Masking low complexity seeds...  [0s]
150s Searching alignments...  [0s]
150s Deallocating memory...  [0s]
150s Processing query block 1, reference block 1/1, shape 10/16, index chunk 3/4.
150s Building reference seed array...  [0.002s]
150s Building query seed array...  [0.001s]
150s Computing hash join...  [0s]
150s Masking low complexity seeds...  [0s]
150s Searching alignments...  [0s]
150s Deallocating memory...  [0s]
150s Processing query block 1, reference block 1/1, shape 10/16, index chunk 4/4.
150s Building reference seed array...  [0.002s]
150s Building query seed array...  [0.001s]
150s Computing hash join...  [0s]
150s Masking low complexity seeds...  [0s]
150s Searching alignments...  [0s]
150s Deallocating memory...  [0s]
150s Processing query block 1, reference block 1/1, shape 11/16, index chunk 1/4.
150s Building reference seed array...  [0.002s]
150s Building query seed array...  [0.001s]
150s Computing hash join...  [0s]
150s Masking low complexity seeds...  [0s]
150s Searching alignments...  [0s]
150s Deallocating memory...  [0s]
150s Processing query block 1, reference block 1/1, shape 11/16, index chunk 2/4.
150s Building reference seed array...  [0.002s]
150s Building query seed array...  [0.001s]
150s Computing hash join...  [0s]
150s Masking low complexity seeds...  [0s]
150s Searching alignments...  [0s]
150s Deallocating memory...  [0s]
150s Processing query block 1, reference block 1/1, shape 11/16, index chunk 3/4.
150s Building reference seed array...  [0.002s]
150s Building query seed array...  [0.001s]
150s Computing hash join...  [0s]
150s Masking low complexity seeds...  [0s]
150s Searching alignments...  [0s]
150s Deallocating memory...  [0s]
150s Processing query block 1, reference block 1/1, shape 11/16, index chunk 4/4.
150s Building reference seed array...  [0.002s]
150s Building query seed array...  [0.001s]
150s Computing hash join...  [0s]
150s Masking low complexity seeds...  [0s]
150s Searching alignments...  [0s]
150s Deallocating memory...  [0s]
150s Processing query block 1, reference block 1/1, shape 12/16, index chunk 1/4.
150s Building reference seed array...  [0.002s]
150s Building query seed array...  [0.001s]
150s Computing hash join...  [0s]
150s Masking low complexity seeds...  [0s]
150s Searching alignments...  [0s]
150s Deallocating memory...  [0s]
150s Processing query block 1, reference block 1/1, shape 12/16, index chunk 2/4.
150s Building reference seed array...  [0.002s]
150s Building query seed array...  [0.001s]
150s Computing hash join...  [0s]
150s Masking low complexity seeds...  [0s]
150s Searching alignments...  [0s]
150s Deallocating memory...  [0s]
150s Processing query block 1, reference block 1/1, shape 12/16, index chunk 3/4.
150s Building reference seed array...  [0.002s]
150s Building query seed array...  [0.001s]
150s Computing hash join...  [0s]
150s Masking low complexity seeds...  [0s]
150s Searching alignments...  [0s]
150s Deallocating memory...  [0s]
150s Processing query block 1, reference block 1/1, shape 12/16, index chunk 4/4.
150s Building reference seed array...  [0.002s]
150s Building query seed array...  [0.001s]
150s Computing hash join...  [0s]
150s Masking low complexity seeds...  [0s]
150s Searching alignments...  [0s]
150s Deallocating memory...  [0s]
150s Processing query block 1, reference block 1/1, shape 13/16, index chunk 1/4.
150s Building reference seed array...  [0.002s]
150s Building query seed array...  [0.001s]
150s Computing hash join...  [0s]
150s Masking low complexity seeds...  [0s]
150s Searching alignments...  [0s]
150s Deallocating memory...  [0s]
150s Processing query block 1, reference block 1/1, shape 13/16, index chunk 2/4.
150s Building reference seed array...  [0.002s]
150s Building query seed array...  [0.001s]
150s Computing hash join...  [0s]
150s Masking low complexity seeds...  [0s]
150s Searching alignments...  [0s]
150s Deallocating memory...  [0s]
150s Processing query block 1, reference block 1/1, shape 13/16, index chunk 3/4.
150s Building reference seed array...  [0.002s]
150s Building query seed array...  [0.001s]
150s Computing hash join...  [0s]
150s Masking low complexity seeds...  [0s]
150s Searching alignments...  [0s]
150s Deallocating memory...  [0s]
150s Processing query block 1, reference block 1/1, shape 13/16, index chunk 4/4.
150s Building reference seed array...  [0.002s]
150s Building query seed array...  [0.001s]
150s Computing hash join...  [0s]
150s Masking low complexity seeds...  [0s]
150s Searching alignments...  [0s]
150s Deallocating memory...  [0s]
150s Processing query block 1, reference block 1/1, shape 14/16, index chunk 1/4.
150s Building reference seed array...  [0.002s]
150s Building query seed array...  [0.001s]
150s Computing hash join...  [0s]
150s Masking low complexity seeds...  [0s]
150s Searching alignments...  [0s]
150s Deallocating memory...  [0s]
150s Processing query block 1, reference block 1/1, shape 14/16, index chunk 2/4.
150s Building reference seed array...  [0.002s]
150s Building query seed array...  [0.001s]
150s Computing hash join...  [0s]
150s Masking low complexity seeds...  [0s]
150s Searching alignments...  [0s]
150s Deallocating memory...  [0s]
150s Processing query block 1, reference block 1/1, shape 14/16, index chunk 3/4.
150s Building reference seed array...  [0.002s]
150s Building query seed array...  [0.001s]
150s Computing hash join...  [0s]
150s Masking low complexity seeds...  [0s]
150s Searching alignments...  [0s]
150s Deallocating memory...  [0s]
150s Processing query block 1, reference block 1/1, shape 14/16, index chunk 4/4.
150s Building reference seed array...  [0.002s]
150s Building query seed array...  [0.001s]
150s Computing hash join...  [0s]
150s Masking low complexity seeds...  [0s]
150s Searching alignments...  [0s]
150s Deallocating memory...  [0s]
150s Processing query block 1, reference block 1/1, shape 15/16, index chunk 1/4.
150s Building reference seed array...  [0.002s]
150s Building query seed array...  [0.001s]
150s Computing hash join...  [0s]
150s Masking low complexity seeds...  [0s]
150s Searching alignments...  [0s]
150s Deallocating memory...  [0s]
150s Processing query block 1, reference block 1/1, shape 15/16, index chunk 2/4.
150s Building reference seed array...  [0.002s]
150s Building query seed array...  [0.001s]
150s Computing hash join...  [0s]
150s Masking low complexity seeds...  [0s]
150s Searching alignments...  [0s]
150s Deallocating memory...  [0s]
150s Processing query block 1, reference block 1/1, shape 15/16, index chunk 3/4.
150s Building reference seed array...  [0.002s]
150s Building query seed array...  [0.001s]
150s Computing hash join...  [0s]
150s Masking low complexity seeds...  [0s]
150s Searching alignments...  [0s]
150s Deallocating memory...  [0s]
150s Processing query block 1, reference block 1/1, shape 15/16, index chunk 4/4.
150s Building reference seed array...  [0.002s]
150s Building query seed array...  [0.001s]
150s Computing hash join...  [0s]
150s Masking low complexity seeds...  [0s]
150s Searching alignments...  [0s]
150s Deallocating memory...  [0s]
150s Processing query block 1, reference block 1/1, shape 16/16, index chunk 1/4.
150s Building reference seed array...  [0.002s]
150s Building query seed array...  [0.001s]
150s Computing hash join...  [0s]
150s Masking low complexity seeds...  [0s]
150s Searching alignments...  [0s]
150s Deallocating memory...  [0s]
150s Processing query block 1, reference block 1/1, shape 16/16, index chunk 2/4.
150s Building reference seed array...  [0.002s]
150s Building query seed array...  [0.001s]
150s Computing hash join...  [0s]
150s Masking low complexity seeds...  [0s]
150s Searching alignments...  [0s]
150s Deallocating memory...  [0s]
150s Processing query block 1, reference block 1/1, shape 16/16, index chunk 3/4.
150s Building reference seed array...  [0.002s]
150s Building query seed array...  [0.001s]
150s Computing hash join...  [0s]
150s Masking low complexity seeds...  [0s]
150s Searching alignments...  [0s]
150s Deallocating memory...  [0s]
150s Processing query block 1, reference block 1/1, shape 16/16, index chunk 4/4.
150s Building reference seed array...  [0.002s]
150s Building query seed array...  [0.001s]
150s Computing hash join...  [0s]
150s Masking low complexity seeds...  [0s]
150s Searching alignments...  [0s]
150s Deallocating memory...  [0s]
150s Deallocating buffers...  [0s]
150s Clearing query masking...  [0s]
150s Computing alignments... Loading trace points...  [0.001s]
150s Sorting trace points...  [0s]
150s Computing alignments...  [0.098s]
150s Deallocating buffers...  [0s]
150s Loading trace points...  [0s]
150s  [0.1s]
150s Deallocating reference...  [0s]
150s Loading reference sequences...  [0s]
150s Deallocating buffers...  [0s]
150s Deallocating queries...  [0s]
150s Loading query sequences...  [0s]
150s Closing the input file...  [0s]
150s Closing the output file...  [0s]
150s Closing the database...  [0s]
150s Cleaning up...  [0s]
150s Total time = 0.523s
150s Reported 64 pairwise alignments, 64 HSPs.
150s 33 queries aligned.
150s + diamond blastp --threads 1 --db test/L.faa.diamond --query test/C.faa --out /tmp/tmp.gdxNHDneSh/C.faa.vs.L.faa.diamond -e 1e-05 --outfmt 6 --sensitive
150s diamond v2.1.9.163 (C) Max Planck Society for the Advancement of Science, Benjamin Buchfink, University of Tuebingen
150s Documentation, support and updates available at http://www.diamondsearch.org
150s Please cite: http://dx.doi.org/10.1038/s41592-021-01101-x Nature Methods (2021)
150s 
150s #CPU threads: 1
150s Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1)
150s Temporary directory: /tmp/tmp.gdxNHDneSh
150s #Target sequences to report alignments for: 25
150s Opening the database...  [0s]
150s Database: test/L.faa.diamond (type: Diamond database, sequences: 40, letters: 26652)
150s Block size = 2000000000
150s Opening the input file...  [0s]
150s Opening the output file...  [0s]
150s Loading query sequences...  [0s]
150s Masking queries...  [0.014s]
151s Algorithm: Double-indexed
151s Building query histograms...  [0.012s]
151s Seeking in database...  [0s]
151s Loading reference sequences...  [0s]
151s Masking reference...  [0.005s]
151s Initializing temporary storage...  [0s]
151s Building reference histograms...  [0.006s]
151s Allocating buffers...  [0s]
151s Processing query block 1, reference block 1/1, shape 1/16, index chunk 1/4.
151s Building reference seed array...  [0.001s]
151s Building query seed array...  [0.002s]
151s Computing hash join...  [0s]
151s Masking low complexity seeds...  [0s]
151s Searching alignments...  [0s]
151s Deallocating memory...  [0s]
151s Processing query block 1, reference block 1/1, shape 1/16, index chunk 2/4.
151s Building reference seed array...  [0.001s]
151s Building query seed array...  [0.002s]
151s Computing hash join...  [0s]
151s Masking low complexity seeds...  [0s]
151s Searching alignments...  [0s]
151s Deallocating memory...  [0s]
151s Processing query block 1, reference block 1/1, shape 1/16, index chunk 3/4.
151s Building reference seed array...  [0.001s]
151s Building query seed array...  [0.002s]
151s Computing hash join...  [0s]
151s Masking low complexity seeds...  [0s]
151s Searching alignments...  [0s]
151s Deallocating memory...  [0s]
151s Processing query block 1, reference block 1/1, shape 1/16, index chunk 4/4.
151s Building reference seed array...  [0.001s]
151s Building query seed array...  [0.002s]
151s Computing hash join...  [0s]
151s Masking low complexity seeds...  [0s]
151s Searching alignments...  [0s]
151s Deallocating memory...  [0s]
151s Processing query block 1, reference block 1/1, shape 2/16, index chunk 1/4.
151s Building reference seed array...  [0.001s]
151s Building query seed array...  [0.002s]
151s Computing hash join...  [0s]
151s Masking low complexity seeds...  [0s]
151s Searching alignments...  [0s]
151s Deallocating memory...  [0s]
151s Processing query block 1, reference block 1/1, shape 2/16, index chunk 2/4.
151s Building reference seed array...  [0.001s]
151s Building query seed array...  [0.002s]
151s Computing hash join...  [0s]
151s Masking low complexity seeds...  [0s]
151s Searching alignments...  [0s]
151s Deallocating memory...  [0s]
151s Processing query block 1, reference block 1/1, shape 2/16, index chunk 3/4.
151s Building reference seed array...  [0.001s]
151s Building query seed array...  [0.002s]
151s Computing hash join...  [0s]
151s Masking low complexity seeds...  [0s]
151s Searching alignments...  [0s]
151s Deallocating memory...  [0s]
151s Processing query block 1, reference block 1/1, shape 2/16, index chunk 4/4.
151s Building reference seed array...  [0.001s]
151s Building query seed array...  [0.002s]
151s Computing hash join...  [0s]
151s Masking low complexity seeds...  [0s]
151s Searching alignments...  [0s]
151s Deallocating memory...  [0s]
151s Processing query block 1, reference block 1/1, shape 3/16, index chunk 1/4.
151s Building reference seed array...  [0.001s]
151s Building query seed array...  [0.002s]
151s Computing hash join...  [0s]
151s Masking low complexity seeds...  [0s]
151s Searching alignments...  [0s]
151s Deallocating memory...  [0s]
151s Processing query block 1, reference block 1/1, shape 3/16, index chunk 2/4.
151s Building reference seed array...  [0.001s]
151s Building query seed array...  [0.002s]
151s Computing hash join...  [0s]
151s Masking low complexity seeds...  [0s]
151s Searching alignments...  [0s]
151s Deallocating memory...  [0s]
151s Processing query block 1, reference block 1/1, shape 3/16, index chunk 3/4.
151s Building reference seed array...  [0.001s]
151s Building query seed array...  [0.002s]
151s Computing hash join...  [0s]
151s Masking low complexity seeds...  [0s]
151s Searching alignments...  [0s]
151s Deallocating memory...  [0s]
151s Processing query block 1, reference block 1/1, shape 3/16, index chunk 4/4.
151s Building reference seed array...  [0.001s]
151s Building query seed array...  [0.002s]
151s Computing hash join...  [0s]
151s Masking low complexity seeds...  [0s]
151s Searching alignments...  [0s]
151s Deallocating memory...  [0s]
151s Processing query block 1, reference block 1/1, shape 4/16, index chunk 1/4.
151s Building reference seed array...  [0.001s]
151s Building query seed array...  [0.002s]
151s Computing hash join...  [0s]
151s Masking low complexity seeds...  [0s]
151s Searching alignments...  [0s]
151s Deallocating memory...  [0s]
151s Processing query block 1, reference block 1/1, shape 4/16, index chunk 2/4.
151s Building reference seed array...  [0.001s]
151s Building query seed array...  [0.002s]
151s Computing hash join...  [0s]
151s Masking low complexity seeds...  [0s]
151s Searching alignments...  [0s]
151s Deallocating memory...  [0s]
151s Processing query block 1, reference block 1/1, shape 4/16, index chunk 3/4.
151s Building reference seed array...  [0.001s]
151s Building query seed array...  [0.002s]
151s Computing hash join...  [0s]
151s Masking low complexity seeds...  [0s]
151s Searching alignments...  [0s]
151s Deallocating memory...  [0s]
151s Processing query block 1, reference block 1/1, shape 4/16, index chunk 4/4.
151s Building reference seed array...  [0.001s]
151s Building query seed array...  [0.002s]
151s Computing hash join...  [0s]
151s Masking low complexity seeds...  [0s]
151s Searching alignments...  [0s]
151s Deallocating memory...  [0s]
151s Processing query block 1, reference block 1/1, shape 5/16, index chunk 1/4.
151s Building reference seed array...  [0.001s]
151s Building query seed array...  [0.002s]
151s Computing hash join...  [0s]
151s Masking low complexity seeds...  [0s]
151s Searching alignments...  [0s]
151s Deallocating memory...  [0s]
151s Processing query block 1, reference block 1/1, shape 5/16, index chunk 2/4.
151s Building reference seed array...  [0.001s]
151s Building query seed array...  [0.002s]
151s Computing hash join...  [0s]
151s Masking low complexity seeds...  [0s]
151s Searching alignments...  [0s]
151s Deallocating memory...  [0s]
151s Processing query block 1, reference block 1/1, shape 5/16, index chunk 3/4.
151s Building reference seed array...  [0.001s]
151s Building query seed array...  [0.002s]
151s Computing hash join...  [0s]
151s Masking low complexity seeds...  [0s]
151s Searching alignments...  [0s]
151s Deallocating memory...  [0s]
151s Processing query block 1, reference block 1/1, shape 5/16, index chunk 4/4.
151s Building reference seed array...  [0.001s]
151s Building query seed array...  [0.002s]
151s Computing hash join...  [0s]
151s Masking low complexity seeds...  [0s]
151s Searching alignments...  [0s]
151s Deallocating memory...  [0s]
151s Processing query block 1, reference block 1/1, shape 6/16, index chunk 1/4.
151s Building reference seed array...  [0.001s]
151s Building query seed array...  [0.002s]
151s Computing hash join...  [0s]
151s Masking low complexity seeds...  [0s]
151s Searching alignments...  [0s]
151s Deallocating memory...  [0s]
151s Processing query block 1, reference block 1/1, shape 6/16, index chunk 2/4.
151s Building reference seed array...  [0.001s]
151s Building query seed array...  [0.002s]
151s Computing hash join...  [0s]
151s Masking low complexity seeds...  [0s]
151s Searching alignments...  [0s]
151s Deallocating memory...  [0s]
151s Processing query block 1, reference block 1/1, shape 6/16, index chunk 3/4.
151s Building reference seed array...  [0.001s]
151s Building query seed array...  [0.002s]
151s Computing hash join...  [0s]
151s Masking low complexity seeds...  [0s]
151s Searching alignments...  [0s]
151s Deallocating memory...  [0s]
151s Processing query block 1, reference block 1/1, shape 6/16, index chunk 4/4.
151s Building reference seed array...  [0.001s]
151s Building query seed array...  [0.002s]
151s Computing hash join...  [0s]
151s Masking low complexity seeds...  [0s]
151s Searching alignments...  [0s]
151s Deallocating memory...  [0s]
151s Processing query block 1, reference block 1/1, shape 7/16, index chunk 1/4.
151s Building reference seed array...  [0.001s]
151s Building query seed array...  [0.002s]
151s Computing hash join...  [0s]
151s Masking low complexity seeds...  [0s]
151s Searching alignments...  [0s]
151s Deallocating memory...  [0s]
151s Processing query block 1, reference block 1/1, shape 7/16, index chunk 2/4.
151s Building reference seed array...  [0.001s]
151s Building query seed array...  [0.002s]
151s Computing hash join...  [0s]
151s Masking low complexity seeds...  [0s]
151s Searching alignments...  [0s]
151s Deallocating memory...  [0s]
151s Processing query block 1, reference block 1/1, shape 7/16, index chunk 3/4.
151s Building reference seed array...  [0.001s]
151s Building query seed array...  [0.002s]
151s Computing hash join...  [0s]
151s Masking low complexity seeds...  [0s]
151s Searching alignments...  [0s]
151s Deallocating memory...  [0s]
151s Processing query block 1, reference block 1/1, shape 7/16, index chunk 4/4.
151s Building reference seed array...  [0.001s]
151s Building query seed array...  [0.002s]
151s Computing hash join...  [0s]
151s Masking low complexity seeds...  [0s]
151s Searching alignments...  [0s]
151s Deallocating memory...  [0s]
151s Processing query block 1, reference block 1/1, shape 8/16, index chunk 1/4.
151s Building reference seed array...  [0.001s]
151s Building query seed array...  [0.002s]
151s Computing hash join...  [0s]
151s Masking low complexity seeds...  [0s]
151s Searching alignments...  [0s]
151s Deallocating memory...  [0s]
151s Processing query block 1, reference block 1/1, shape 8/16, index chunk 2/4.
151s Building reference seed array...  [0.001s]
151s Building query seed array...  [0.002s]
151s Computing hash join...  [0s]
151s Masking low complexity seeds...  [0s]
151s Searching alignments...  [0s]
151s Deallocating memory...  [0s]
151s Processing query block 1, reference block 1/1, shape 8/16, index chunk 3/4.
151s Building reference seed array...  [0.001s]
151s Building query seed array...  [0.002s]
151s Computing hash join...  [0s]
151s Masking low complexity seeds...  [0s]
151s Searching alignments...  [0s]
151s Deallocating memory...  [0s]
151s Processing query block 1, reference block 1/1, shape 8/16, index chunk 4/4.
151s Building reference seed array...  [0.001s]
151s Building query seed array...  [0.002s]
151s Computing hash join...  [0s]
151s Masking low complexity seeds...  [0s]
151s Searching alignments...  [0s]
151s Deallocating memory...  [0s]
151s Processing query block 1, reference block 1/1, shape 9/16, index chunk 1/4.
151s Building reference seed array...  [0.001s]
151s Building query seed array...  [0.002s]
151s Computing hash join...  [0s]
151s Masking low complexity seeds...  [0s]
151s Searching alignments...  [0s]
151s Deallocating memory...  [0s]
151s Processing query block 1, reference block 1/1, shape 9/16, index chunk 2/4.
151s Building reference seed array...  [0.001s]
151s Building query seed array...  [0.002s]
151s Computing hash join...  [0s]
151s Masking low complexity seeds...  [0s]
151s Searching alignments...  [0s]
151s Deallocating memory...  [0s]
151s Processing query block 1, reference block 1/1, shape 9/16, index chunk 3/4.
151s Building reference seed array...  [0.001s]
151s Building query seed array...  [0.002s]
151s Computing hash join...  [0s]
151s Masking low complexity seeds...  [0s]
151s Searching alignments...  [0s]
151s Deallocating memory...  [0s]
151s Processing query block 1, reference block 1/1, shape 9/16, index chunk 4/4.
151s Building reference seed array...  [0.001s]
151s Building query seed array...  [0.002s]
151s Computing hash join...  [0s]
151s Masking low complexity seeds...  [0s]
151s Searching alignments...  [0s]
151s Deallocating memory...  [0s]
151s Processing query block 1, reference block 1/1, shape 10/16, index chunk 1/4.
151s Building reference seed array...  [0.001s]
151s Building query seed array...  [0.002s]
151s Computing hash join...  [0s]
151s Masking low complexity seeds...  [0s]
151s Searching alignments...  [0s]
151s Deallocating memory...  [0s]
151s Processing query block 1, reference block 1/1, shape 10/16, index chunk 2/4.
151s Building reference seed array...  [0.001s]
151s Building query seed array...  [0.002s]
151s Computing hash join...  [0s]
151s Masking low complexity seeds...  [0s]
151s Searching alignments...  [0s]
151s Deallocating memory...  [0s]
151s Processing query block 1, reference block 1/1, shape 10/16, index chunk 3/4.
151s Building reference seed array...  [0.001s]
151s Building query seed array...  [0.002s]
151s Computing hash join...  [0s]
151s Masking low complexity seeds...  [0s]
151s Searching alignments...  [0s]
151s Deallocating memory...  [0s]
151s Processing query block 1, reference block 1/1, shape 10/16, index chunk 4/4.
151s Building reference seed array...  [0.001s]
151s Building query seed array...  [0.002s]
151s Computing hash join...  [0s]
151s Masking low complexity seeds...  [0s]
151s Searching alignments...  [0s]
151s Deallocating memory...  [0s]
151s Processing query block 1, reference block 1/1, shape 11/16, index chunk 1/4.
151s Building reference seed array...  [0.001s]
151s Building query seed array...  [0.002s]
151s Computing hash join...  [0s]
151s Masking low complexity seeds...  [0s]
151s Searching alignments...  [0s]
151s Deallocating memory...  [0s]
151s Processing query block 1, reference block 1/1, shape 11/16, index chunk 2/4.
151s Building reference seed array...  [0.001s]
151s Building query seed array...  [0.002s]
151s Computing hash join...  [0s]
151s Masking low complexity seeds...  [0s]
151s Searching alignments...  [0s]
151s Deallocating memory...  [0s]
151s Processing query block 1, reference block 1/1, shape 11/16, index chunk 3/4.
151s Building reference seed array...  [0.001s]
151s Building query seed array...  [0.002s]
151s Computing hash join...  [0s]
151s Masking low complexity seeds...  [0s]
151s Searching alignments...  [0s]
151s Deallocating memory...  [0s]
151s Processing query block 1, reference block 1/1, shape 11/16, index chunk 4/4.
151s Building reference seed array...  [0.001s]
151s Building query seed array...  [0.002s]
151s Computing hash join...  [0s]
151s Masking low complexity seeds...  [0s]
151s Searching alignments...  [0s]
151s Deallocating memory...  [0s]
151s Processing query block 1, reference block 1/1, shape 12/16, index chunk 1/4.
151s Building reference seed array...  [0.001s]
151s Building query seed array...  [0.002s]
151s Computing hash join...  [0s]
151s Masking low complexity seeds...  [0s]
151s Searching alignments...  [0s]
151s Deallocating memory...  [0s]
151s Processing query block 1, reference block 1/1, shape 12/16, index chunk 2/4.
151s Building reference seed array...  [0.001s]
151s Building query seed array...  [0.002s]
151s Computing hash join...  [0s]
151s Masking low complexity seeds...  [0s]
151s Searching alignments...  [0s]
151s Deallocating memory...  [0s]
151s Processing query block 1, reference block 1/1, shape 12/16, index chunk 3/4.
151s Building reference seed array...  [0.001s]
151s Building query seed array...  [0.002s]
151s Computing hash join...  [0s]
151s Masking low complexity seeds...  [0s]
151s Searching alignments...  [0s]
151s Deallocating memory...  [0s]
151s Processing query block 1, reference block 1/1, shape 12/16, index chunk 4/4.
151s Building reference seed array...  [0.001s]
151s Building query seed array...  [0.002s]
151s Computing hash join...  [0s]
151s Masking low complexity seeds...  [0s]
151s Searching alignments...  [0s]
151s Deallocating memory...  [0s]
151s Processing query block 1, reference block 1/1, shape 13/16, index chunk 1/4.
151s Building reference seed array...  [0.001s]
151s Building query seed array...  [0.002s]
151s Computing hash join...  [0s]
151s Masking low complexity seeds...  [0s]
151s Searching alignments...  [0s]
151s Deallocating memory...  [0s]
151s Processing query block 1, reference block 1/1, shape 13/16, index chunk 2/4.
151s Building reference seed array...  [0.001s]
151s Building query seed array...  [0.002s]
151s Computing hash join...  [0s]
151s Masking low complexity seeds...  [0s]
151s Searching alignments...  [0s]
151s Deallocating memory...  [0s]
151s Processing query block 1, reference block 1/1, shape 13/16, index chunk 3/4.
151s Building reference seed array...  [0.001s]
151s Building query seed array...  [0.002s]
151s Computing hash join...  [0s]
151s Masking low complexity seeds...  [0s]
151s Searching alignments...  [0s]
151s Deallocating memory...  [0s]
151s Processing query block 1, reference block 1/1, shape 13/16, index chunk 4/4.
151s Building reference seed array...  [0.001s]
151s Building query seed array...  [0.002s]
151s Computing hash join...  [0s]
151s Masking low complexity seeds...  [0s]
151s Searching alignments...  [0s]
151s Deallocating memory...  [0s]
151s Processing query block 1, reference block 1/1, shape 14/16, index chunk 1/4.
151s Building reference seed array...  [0.001s]
151s Building query seed array...  [0.002s]
151s Computing hash join...  [0s]
151s Masking low complexity seeds...  [0s]
151s Searching alignments...  [0s]
151s Deallocating memory...  [0s]
151s Processing query block 1, reference block 1/1, shape 14/16, index chunk 2/4.
151s Building reference seed array...  [0.001s]
151s Building query seed array...  [0.002s]
151s Computing hash join...  [0s]
151s Masking low complexity seeds...  [0s]
151s Searching alignments...  [0s]
151s Deallocating memory...  [0s]
151s Processing query block 1, reference block 1/1, shape 14/16, index chunk 3/4.
151s Building reference seed array...  [0.001s]
151s Building query seed array...  [0.002s]
151s Computing hash join...  [0s]
151s Masking low complexity seeds...  [0s]
151s Searching alignments...  [0s]
151s Deallocating memory...  [0s]
151s Processing query block 1, reference block 1/1, shape 14/16, index chunk 4/4.
151s Building reference seed array...  [0.001s]
151s Building query seed array...  [0.002s]
151s Computing hash join...  [0s]
151s Masking low complexity seeds...  [0s]
151s Searching alignments...  [0s]
151s Deallocating memory...  [0s]
151s Processing query block 1, reference block 1/1, shape 15/16, index chunk 1/4.
151s Building reference seed array...  [0.001s]
151s Building query seed array...  [0.002s]
151s Computing hash join...  [0s]
151s Masking low complexity seeds...  [0s]
151s Searching alignments...  [0s]
151s Deallocating memory...  [0s]
151s Processing query block 1, reference block 1/1, shape 15/16, index chunk 2/4.
151s Building reference seed array...  [0.001s]
151s Building query seed array...  [0.002s]
151s Computing hash join...  [0s]
151s Masking low complexity seeds...  [0s]
151s Searching alignments...  [0s]
151s Deallocating memory...  [0s]
151s Processing query block 1, reference block 1/1, shape 15/16, index chunk 3/4.
151s Building reference seed array...  [0.001s]
151s Building query seed array...  [0.002s]
151s Computing hash join...  [0s]
151s Masking low complexity seeds...  [0s]
151s Searching alignments...  [0s]
151s Deallocating memory...  [0s]
151s Processing query block 1, reference block 1/1, shape 15/16, index chunk 4/4.
151s Building reference seed array...  [0.001s]
151s Building query seed array...  [0.002s]
151s Computing hash join...  [0s]
151s Masking low complexity seeds...  [0s]
151s Searching alignments...  [0s]
151s Deallocating memory...  [0s]
151s Processing query block 1, reference block 1/1, shape 16/16, index chunk 1/4.
151s Building reference seed array...  [0.001s]
151s Building query seed array...  [0.002s]
151s Computing hash join...  [0s]
151s Masking low complexity seeds...  [0s]
151s Searching alignments...  [0s]
151s Deallocating memory...  [0s]
151s Processing query block 1, reference block 1/1, shape 16/16, index chunk 2/4.
151s Building reference seed array...  [0.001s]
151s Building query seed array...  [0.002s]
151s Computing hash join...  [0s]
151s Masking low complexity seeds...  [0s]
151s Searching alignments...  [0s]
151s Deallocating memory...  [0s]
151s Processing query block 1, reference block 1/1, shape 16/16, index chunk 3/4.
151s Building reference seed array...  [0.001s]
151s Building query seed array...  [0.002s]
151s Computing hash join...  [0s]
151s Masking low complexity seeds...  [0s]
151s Searching alignments...  [0s]
151s Deallocating memory...  [0s]
151s Processing query block 1, reference block 1/1, shape 16/16, index chunk 4/4.
151s Building reference seed array...  [0.001s]
151s Building query seed array...  [0.002s]
151s Computing hash join...  [0s]
151s Masking low complexity seeds...  [0s]
151s Searching alignments...  [0s]
151s Deallocating memory...  [0s]
151s Deallocating buffers...  [0s]
151s Clearing query masking...  [0s]
151s Computing alignments... Loading trace points...  [0.001s]
151s Sorting trace points...  [0s]
151s Computing alignments...  [0.133s]
151s Deallocating buffers...  [0s]
151s Loading trace points...  [0s]
151s  [0.135s]
151s Deallocating reference...  [0s]
151s Loading reference sequences...  [0s]
151s Deallocating buffers...  [0s]
151s Deallocating queries...  [0s]
151s Loading query sequences...  [0s]
151s Closing the input file...  [0s]
151s Closing the output file...  [0s]
151s Closing the database...  [0s]
151s Cleaning up...  [0s]
151s Total time = 0.544s
151s Reported 133 pairwise alignments, 133 HSPs.
151s 109 queries aligned.
151s + diamond blastp --threads 1 --db test/C.faa.diamond --query test/M.faa --out /tmp/tmp.gdxNHDneSh/M.faa.vs.C.faa.diamond -e 1e-05 --outfmt 6 --sensitive
151s diamond v2.1.9.163 (C) Max Planck Society for the Advancement of Science, Benjamin Buchfink, University of Tuebingen
151s Documentation, support and updates available at http://www.diamondsearch.org
151s Please cite: http://dx.doi.org/10.1038/s41592-021-01101-x Nature Methods (2021)
151s 
151s #CPU threads: 1
151s Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1)
151s Temporary directory: /tmp/tmp.gdxNHDneSh
151s #Target sequences to report alignments for: 25
151s Opening the database...  [0s]
151s Database: test/C.faa.diamond (type: Diamond database, sequences: 109, letters: 51213)
151s Block size = 2000000000
151s Opening the input file...  [0s]
151s Opening the output file...  [0s]
151s Loading query sequences...  [0s]
151s Masking queries...  [0.008s]
151s Algorithm: Double-indexed
151s Building query histograms...  [0.006s]
151s Seeking in database...  [0s]
151s Loading reference sequences...  [0s]
151s Masking reference...  [0.011s]
151s Initializing temporary storage...  [0s]
151s Building reference histograms...  [0.012s]
151s Allocating buffers...  [0s]
151s Processing query block 1, reference block 1/1, shape 1/16, index chunk 1/4.
151s Building reference seed array...  [0.002s]
151s Building query seed array...  [0.001s]
151s Computing hash join...  [0s]
151s Masking low complexity seeds...  [0s]
151s Searching alignments...  [0s]
151s Deallocating memory...  [0s]
151s Processing query block 1, reference block 1/1, shape 1/16, index chunk 2/4.
151s Building reference seed array...  [0.002s]
151s Building query seed array...  [0.001s]
151s Computing hash join...  [0s]
151s Masking low complexity seeds...  [0s]
151s Searching alignments...  [0s]
151s Deallocating memory...  [0s]
151s Processing query block 1, reference block 1/1, shape 1/16, index chunk 3/4.
151s Building reference seed array...  [0.002s]
151s Building query seed array...  [0.001s]
151s Computing hash join...  [0s]
151s Masking low complexity seeds...  [0s]
151s Searching alignments...  [0s]
151s Deallocating memory...  [0s]
151s Processing query block 1, reference block 1/1, shape 1/16, index chunk 4/4.
151s Building reference seed array...  [0.002s]
151s Building query seed array...  [0.001s]
151s Computing hash join...  [0s]
151s Masking low complexity seeds...  [0s]
151s Searching alignments...  [0s]
151s Deallocating memory...  [0s]
151s Processing query block 1, reference block 1/1, shape 2/16, index chunk 1/4.
151s Building reference seed array...  [0.002s]
151s Building query seed array...  [0.001s]
151s Computing hash join...  [0s]
151s Masking low complexity seeds...  [0s]
151s Searching alignments...  [0s]
151s Deallocating memory...  [0s]
151s Processing query block 1, reference block 1/1, shape 2/16, index chunk 2/4.
151s Building reference seed array...  [0.002s]
151s Building query seed array...  [0.001s]
151s Computing hash join...  [0s]
151s Masking low complexity seeds...  [0s]
151s Searching alignments...  [0s]
151s Deallocating memory...  [0s]
151s Processing query block 1, reference block 1/1, shape 2/16, index chunk 3/4.
151s Building reference seed array...  [0.002s]
151s Building query seed array...  [0.001s]
151s Computing hash join...  [0s]
151s Masking low complexity seeds...  [0s]
151s Searching alignments...  [0s]
151s Deallocating memory...  [0s]
151s Processing query block 1, reference block 1/1, shape 2/16, index chunk 4/4.
151s Building reference seed array...  [0.002s]
151s Building query seed array...  [0.001s]
151s Computing hash join...  [0s]
151s Masking low complexity seeds...  [0s]
151s Searching alignments...  [0s]
151s Deallocating memory...  [0s]
151s Processing query block 1, reference block 1/1, shape 3/16, index chunk 1/4.
151s Building reference seed array...  [0.002s]
151s Building query seed array...  [0.001s]
151s Computing hash join...  [0s]
151s Masking low complexity seeds...  [0s]
151s Searching alignments...  [0s]
151s Deallocating memory...  [0s]
151s Processing query block 1, reference block 1/1, shape 3/16, index chunk 2/4.
151s Building reference seed array...  [0.002s]
151s Building query seed array...  [0.001s]
151s Computing hash join...  [0s]
151s Masking low complexity seeds...  [0s]
151s Searching alignments...  [0s]
151s Deallocating memory...  [0s]
151s Processing query block 1, reference block 1/1, shape 3/16, index chunk 3/4.
151s Building reference seed array...  [0.002s]
151s Building query seed array...  [0.001s]
151s Computing hash join...  [0s]
151s Masking low complexity seeds...  [0s]
151s Searching alignments...  [0s]
151s Deallocating memory...  [0s]
151s Processing query block 1, reference block 1/1, shape 3/16, index chunk 4/4.
151s Building reference seed array...  [0.002s]
151s Building query seed array...  [0.001s]
151s Computing hash join...  [0s]
151s Masking low complexity seeds...  [0s]
151s Searching alignments...  [0s]
151s Deallocating memory...  [0s]
151s Processing query block 1, reference block 1/1, shape 4/16, index chunk 1/4.
151s Building reference seed array...  [0.002s]
151s Building query seed array...  [0.001s]
151s Computing hash join...  [0s]
151s Masking low complexity seeds...  [0s]
151s Searching alignments...  [0s]
151s Deallocating memory...  [0s]
151s Processing query block 1, reference block 1/1, shape 4/16, index chunk 2/4.
151s Building reference seed array...  [0.002s]
151s Building query seed array...  [0.001s]
151s Computing hash join...  [0s]
151s Masking low complexity seeds...  [0s]
151s Searching alignments...  [0s]
151s Deallocating memory...  [0s]
151s Processing query block 1, reference block 1/1, shape 4/16, index chunk 3/4.
151s Building reference seed array...  [0.002s]
151s Building query seed array...  [0.001s]
151s Computing hash join...  [0s]
151s Masking low complexity seeds...  [0s]
151s Searching alignments...  [0s]
151s Deallocating memory...  [0s]
151s Processing query block 1, reference block 1/1, shape 4/16, index chunk 4/4.
151s Building reference seed array...  [0.002s]
151s Building query seed array...  [0.001s]
151s Computing hash join...  [0s]
151s Masking low complexity seeds...  [0s]
151s Searching alignments...  [0s]
151s Deallocating memory...  [0s]
151s Processing query block 1, reference block 1/1, shape 5/16, index chunk 1/4.
151s Building reference seed array...  [0.002s]
151s Building query seed array...  [0.001s]
151s Computing hash join...  [0s]
151s Masking low complexity seeds...  [0s]
151s Searching alignments...  [0s]
151s Deallocating memory...  [0s]
151s Processing query block 1, reference block 1/1, shape 5/16, index chunk 2/4.
151s Building reference seed array...  [0.002s]
151s Building query seed array...  [0.001s]
151s Computing hash join...  [0s]
151s Masking low complexity seeds...  [0s]
151s Searching alignments...  [0s]
151s Deallocating memory...  [0s]
151s Processing query block 1, reference block 1/1, shape 5/16, index chunk 3/4.
151s Building reference seed array...  [0.002s]
151s Building query seed array...  [0.001s]
151s Computing hash join...  [0s]
151s Masking low complexity seeds...  [0s]
151s Searching alignments...  [0s]
151s Deallocating memory...  [0s]
151s Processing query block 1, reference block 1/1, shape 5/16, index chunk 4/4.
151s Building reference seed array...  [0.002s]
151s Building query seed array...  [0.001s]
151s Computing hash join...  [0s]
151s Masking low complexity seeds...  [0s]
151s Searching alignments...  [0s]
151s Deallocating memory...  [0s]
151s Processing query block 1, reference block 1/1, shape 6/16, index chunk 1/4.
151s Building reference seed array...  [0.002s]
151s Building query seed array...  [0.001s]
151s Computing hash join...  [0s]
151s Masking low complexity seeds...  [0s]
151s Searching alignments...  [0s]
151s Deallocating memory...  [0s]
151s Processing query block 1, reference block 1/1, shape 6/16, index chunk 2/4.
151s Building reference seed array...  [0.002s]
151s Building query seed array...  [0.001s]
151s Computing hash join...  [0s]
151s Masking low complexity seeds...  [0s]
151s Searching alignments...  [0s]
151s Deallocating memory...  [0s]
151s Processing query block 1, reference block 1/1, shape 6/16, index chunk 3/4.
151s Building reference seed array...  [0.002s]
151s Building query seed array...  [0.001s]
151s Computing hash join...  [0s]
151s Masking low complexity seeds...  [0s]
151s Searching alignments...  [0s]
151s Deallocating memory...  [0s]
151s Processing query block 1, reference block 1/1, shape 6/16, index chunk 4/4.
151s Building reference seed array...  [0.002s]
151s Building query seed array...  [0.001s]
151s Computing hash join...  [0s]
151s Masking low complexity seeds...  [0s]
151s Searching alignments...  [0s]
151s Deallocating memory...  [0s]
151s Processing query block 1, reference block 1/1, shape 7/16, index chunk 1/4.
151s Building reference seed array...  [0.002s]
151s Building query seed array...  [0.001s]
151s Computing hash join...  [0s]
151s Masking low complexity seeds...  [0s]
151s Searching alignments...  [0s]
151s Deallocating memory...  [0s]
151s Processing query block 1, reference block 1/1, shape 7/16, index chunk 2/4.
151s Building reference seed array...  [0.002s]
151s Building query seed array...  [0.001s]
151s Computing hash join...  [0s]
151s Masking low complexity seeds...  [0s]
151s Searching alignments...  [0s]
151s Deallocating memory...  [0s]
151s Processing query block 1, reference block 1/1, shape 7/16, index chunk 3/4.
151s Building reference seed array...  [0.002s]
151s Building query seed array...  [0.001s]
151s Computing hash join...  [0s]
151s Masking low complexity seeds...  [0s]
151s Searching alignments...  [0s]
151s Deallocating memory...  [0s]
151s Processing query block 1, reference block 1/1, shape 7/16, index chunk 4/4.
151s Building reference seed array...  [0.002s]
151s Building query seed array...  [0.001s]
151s Computing hash join...  [0s]
151s Masking low complexity seeds...  [0s]
151s Searching alignments...  [0s]
151s Deallocating memory...  [0s]
151s Processing query block 1, reference block 1/1, shape 8/16, index chunk 1/4.
151s Building reference seed array...  [0.002s]
151s Building query seed array...  [0.001s]
151s Computing hash join...  [0s]
151s Masking low complexity seeds...  [0s]
151s Searching alignments...  [0s]
151s Deallocating memory...  [0s]
151s Processing query block 1, reference block 1/1, shape 8/16, index chunk 2/4.
151s Building reference seed array...  [0.002s]
151s Building query seed array...  [0.001s]
151s Computing hash join...  [0s]
151s Masking low complexity seeds...  [0s]
151s Searching alignments...  [0s]
151s Deallocating memory...  [0s]
151s Processing query block 1, reference block 1/1, shape 8/16, index chunk 3/4.
151s Building reference seed array...  [0.002s]
151s Building query seed array...  [0.001s]
151s Computing hash join...  [0s]
151s Masking low complexity seeds...  [0s]
151s Searching alignments...  [0s]
151s Deallocating memory...  [0s]
151s Processing query block 1, reference block 1/1, shape 8/16, index chunk 4/4.
151s Building reference seed array...  [0.002s]
151s Building query seed array...  [0.001s]
151s Computing hash join...  [0s]
151s Masking low complexity seeds...  [0s]
151s Searching alignments...  [0s]
151s Deallocating memory...  [0s]
151s Processing query block 1, reference block 1/1, shape 9/16, index chunk 1/4.
151s Building reference seed array...  [0.002s]
151s Building query seed array...  [0.001s]
151s Computing hash join...  [0s]
151s Masking low complexity seeds...  [0s]
151s Searching alignments...  [0s]
151s Deallocating memory...  [0s]
151s Processing query block 1, reference block 1/1, shape 9/16, index chunk 2/4.
151s Building reference seed array...  [0.002s]
151s Building query seed array...  [0.001s]
151s Computing hash join...  [0s]
151s Masking low complexity seeds...  [0s]
151s Searching alignments...  [0s]
151s Deallocating memory...  [0s]
151s Processing query block 1, reference block 1/1, shape 9/16, index chunk 3/4.
151s Building reference seed array...  [0.002s]
151s Building query seed array...  [0.001s]
151s Computing hash join...  [0s]
151s Masking low complexity seeds...  [0s]
151s Searching alignments...  [0s]
151s Deallocating memory...  [0s]
151s Processing query block 1, reference block 1/1, shape 9/16, index chunk 4/4.
151s Building reference seed array...  [0.002s]
151s Building query seed array...  [0.001s]
151s Computing hash join...  [0s]
151s Masking low complexity seeds...  [0s]
151s Searching alignments...  [0s]
151s Deallocating memory...  [0s]
151s Processing query block 1, reference block 1/1, shape 10/16, index chunk 1/4.
151s Building reference seed array...  [0.002s]
151s Building query seed array...  [0.001s]
151s Computing hash join...  [0s]
151s Masking low complexity seeds...  [0s]
151s Searching alignments...  [0s]
151s Deallocating memory...  [0s]
151s Processing query block 1, reference block 1/1, shape 10/16, index chunk 2/4.
151s Building reference seed array...  [0.002s]
151s Building query seed array...  [0.001s]
151s Computing hash join...  [0s]
151s Masking low complexity seeds...  [0s]
151s Searching alignments...  [0s]
151s Deallocating memory...  [0s]
151s Processing query block 1, reference block 1/1, shape 10/16, index chunk 3/4.
151s Building reference seed array...  [0.002s]
151s Building query seed array...  [0.001s]
151s Computing hash join...  [0s]
151s Masking low complexity seeds...  [0s]
151s Searching alignments...  [0s]
151s Deallocating memory...  [0s]
151s Processing query block 1, reference block 1/1, shape 10/16, index chunk 4/4.
151s Building reference seed array...  [0.002s]
151s Building query seed array...  [0.001s]
151s Computing hash join...  [0s]
151s Masking low complexity seeds...  [0s]
151s Searching alignments...  [0s]
151s Deallocating memory...  [0s]
151s Processing query block 1, reference block 1/1, shape 11/16, index chunk 1/4.
151s Building reference seed array...  [0.002s]
151s Building query seed array...  [0.001s]
151s Computing hash join...  [0s]
151s Masking low complexity seeds...  [0s]
151s Searching alignments...  [0s]
151s Deallocating memory...  [0s]
151s Processing query block 1, reference block 1/1, shape 11/16, index chunk 2/4.
151s Building reference seed array...  [0.002s]
151s Building query seed array...  [0.001s]
151s Computing hash join...  [0s]
151s Masking low complexity seeds...  [0s]
151s Searching alignments...  [0s]
151s Deallocating memory...  [0s]
151s Processing query block 1, reference block 1/1, shape 11/16, index chunk 3/4.
151s Building reference seed array...  [0.002s]
151s Building query seed array...  [0.001s]
151s Computing hash join...  [0s]
151s Masking low complexity seeds...  [0s]
151s Searching alignments...  [0s]
151s Deallocating memory...  [0s]
151s Processing query block 1, reference block 1/1, shape 11/16, index chunk 4/4.
151s Building reference seed array...  [0.002s]
151s Building query seed array...  [0.001s]
151s Computing hash join...  [0s]
151s Masking low complexity seeds...  [0s]
151s Searching alignments...  [0s]
151s Deallocating memory...  [0s]
151s Processing query block 1, reference block 1/1, shape 12/16, index chunk 1/4.
151s Building reference seed array...  [0.002s]
151s Building query seed array...  [0.001s]
151s Computing hash join...  [0s]
151s Masking low complexity seeds...  [0s]
151s Searching alignments...  [0s]
151s Deallocating memory...  [0s]
151s Processing query block 1, reference block 1/1, shape 12/16, index chunk 2/4.
151s Building reference seed array...  [0.002s]
151s Building query seed array...  [0.001s]
151s Computing hash join...  [0s]
151s Masking low complexity seeds...  [0s]
151s Searching alignments...  [0s]
151s Deallocating memory...  [0s]
151s Processing query block 1, reference block 1/1, shape 12/16, index chunk 3/4.
151s Building reference seed array...  [0.002s]
151s Building query seed array...  [0.001s]
151s Computing hash join...  [0s]
151s Masking low complexity seeds...  [0s]
151s Searching alignments...  [0s]
151s Deallocating memory...  [0s]
151s Processing query block 1, reference block 1/1, shape 12/16, index chunk 4/4.
151s Building reference seed array...  [0.002s]
151s Building query seed array...  [0.001s]
151s Computing hash join...  [0s]
151s Masking low complexity seeds...  [0s]
151s Searching alignments...  [0s]
151s Deallocating memory...  [0s]
151s Processing query block 1, reference block 1/1, shape 13/16, index chunk 1/4.
151s Building reference seed array...  [0.002s]
151s Building query seed array...  [0.001s]
151s Computing hash join...  [0s]
151s Masking low complexity seeds...  [0s]
151s Searching alignments...  [0s]
151s Deallocating memory...  [0s]
151s Processing query block 1, reference block 1/1, shape 13/16, index chunk 2/4.
151s Building reference seed array...  [0.002s]
151s Building query seed array...  [0.001s]
151s Computing hash join...  [0s]
151s Masking low complexity seeds...  [0s]
151s Searching alignments...  [0s]
151s Deallocating memory...  [0s]
151s Processing query block 1, reference block 1/1, shape 13/16, index chunk 3/4.
151s Building reference seed array...  [0.002s]
151s Building query seed array...  [0.001s]
151s Computing hash join...  [0s]
151s Masking low complexity seeds...  [0s]
151s Searching alignments...  [0s]
151s Deallocating memory...  [0s]
151s Processing query block 1, reference block 1/1, shape 13/16, index chunk 4/4.
151s Building reference seed array...  [0.002s]
151s Building query seed array...  [0.001s]
151s Computing hash join...  [0s]
151s Masking low complexity seeds...  [0s]
151s Searching alignments...  [0s]
151s Deallocating memory...  [0s]
151s Processing query block 1, reference block 1/1, shape 14/16, index chunk 1/4.
151s Building reference seed array...  [0.002s]
151s Building query seed array...  [0.001s]
151s Computing hash join...  [0s]
151s Masking low complexity seeds...  [0s]
151s Searching alignments...  [0s]
151s Deallocating memory...  [0s]
151s Processing query block 1, reference block 1/1, shape 14/16, index chunk 2/4.
151s Building reference seed array...  [0.002s]
151s Building query seed array...  [0.001s]
151s Computing hash join...  [0s]
151s Masking low complexity seeds...  [0s]
151s Searching alignments...  [0s]
151s Deallocating memory...  [0s]
151s Processing query block 1, reference block 1/1, shape 14/16, index chunk 3/4.
151s Building reference seed array...  [0.002s]
151s Building query seed array...  [0.001s]
151s Computing hash join...  [0s]
151s Masking low complexity seeds...  [0s]
151s Searching alignments...  [0s]
151s Deallocating memory...  [0s]
151s Processing query block 1, reference block 1/1, shape 14/16, index chunk 4/4.
151s Building reference seed array...  [0.002s]
151s Building query seed array...  [0.001s]
151s Computing hash join...  [0s]
151s Masking low complexity seeds...  [0s]
151s Searching alignments...  [0s]
151s Deallocating memory...  [0s]
151s Processing query block 1, reference block 1/1, shape 15/16, index chunk 1/4.
151s Building reference seed array...  [0.002s]
151s Building query seed array...  [0.001s]
151s Computing hash join...  [0s]
151s Masking low complexity seeds...  [0s]
151s Searching alignments...  [0s]
151s Deallocating memory...  [0s]
151s Processing query block 1, reference block 1/1, shape 15/16, index chunk 2/4.
151s Building reference seed array...  [0.002s]
151s Building query seed array...  [0.001s]
151s Computing hash join...  [0s]
151s Masking low complexity seeds...  [0s]
151s Searching alignments...  [0s]
151s Deallocating memory...  [0s]
151s Processing query block 1, reference block 1/1, shape 15/16, index chunk 3/4.
151s Building reference seed array...  [0.002s]
151s Building query seed array...  [0.001s]
151s Computing hash join...  [0s]
151s Masking low complexity seeds...  [0s]
151s Searching alignments...  [0s]
151s Deallocating memory...  [0s]
151s Processing query block 1, reference block 1/1, shape 15/16, index chunk 4/4.
151s Building reference seed array...  [0.002s]
151s Building query seed array...  [0.001s]
151s Computing hash join...  [0s]
151s Masking low complexity seeds...  [0s]
151s Searching alignments...  [0s]
151s Deallocating memory...  [0s]
151s Processing query block 1, reference block 1/1, shape 16/16, index chunk 1/4.
151s Building reference seed array...  [0.002s]
151s Building query seed array...  [0.001s]
151s Computing hash join...  [0s]
151s Masking low complexity seeds...  [0s]
151s Searching alignments...  [0s]
151s Deallocating memory...  [0s]
151s Processing query block 1, reference block 1/1, shape 16/16, index chunk 2/4.
151s Building reference seed array...  [0.002s]
151s Building query seed array...  [0.001s]
151s Computing hash join...  [0s]
151s Masking low complexity seeds...  [0s]
151s Searching alignments...  [0s]
151s Deallocating memory...  [0s]
151s Processing query block 1, reference block 1/1, shape 16/16, index chunk 3/4.
151s Building reference seed array...  [0.002s]
151s Building query seed array...  [0.001s]
151s Computing hash join...  [0s]
151s Masking low complexity seeds...  [0s]
151s Searching alignments...  [0s]
151s Deallocating memory...  [0s]
151s Processing query block 1, reference block 1/1, shape 16/16, index chunk 4/4.
151s Building reference seed array...  [0.002s]
151s Building query seed array...  [0.001s]
151s Computing hash join...  [0s]
151s Masking low complexity seeds...  [0s]
151s Searching alignments...  [0s]
151s Deallocating memory...  [0s]
151s Deallocating buffers...  [0s]
151s Clearing query masking...  [0s]
151s Computing alignments... Loading trace points...  [0.001s]
151s Sorting trace points...  [0s]
152s Computing alignments...  [0.097s]
152s Deallocating buffers...  [0s]
152s Loading trace points...  [0s]
152s  [0.099s]
152s Deallocating reference...  [0s]
152s Loading reference sequences...  [0s]
152s Deallocating buffers...  [0s]
152s Deallocating queries...  [0s]
152s Loading query sequences...  [0s]
152s Closing the input file...  [0s]
152s Closing the output file...  [0s]
152s Closing the database...  [0s]
152s Cleaning up...  [0s]
152s Total time = 0.501s
152s Reported 62 pairwise alignments, 62 HSPs.
152s 33 queries aligned.
152s + diamond blastp --threads 1 --db test/M.faa.diamond --query test/C.faa --out /tmp/tmp.gdxNHDneSh/C.faa.vs.M.faa.diamond -e 1e-05 --outfmt 6 --sensitive
152s diamond v2.1.9.163 (C) Max Planck Society for the Advancement of Science, Benjamin Buchfink, University of Tuebingen
152s Documentation, support and updates available at http://www.diamondsearch.org
152s Please cite: http://dx.doi.org/10.1038/s41592-021-01101-x Nature Methods (2021)
152s 
152s #CPU threads: 1
152s Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1)
152s Temporary directory: /tmp/tmp.gdxNHDneSh
152s #Target sequences to report alignments for: 25
152s Opening the database...  [0s]
152s Database: test/M.faa.diamond (type: Diamond database, sequences: 40, letters: 26963)
152s Block size = 2000000000
152s Opening the input file...  [0s]
152s Opening the output file...  [0s]
152s Loading query sequences...  [0s]
152s Masking queries...  [0.014s]
152s Algorithm: Double-indexed
152s Building query histograms...  [0.012s]
152s Seeking in database...  [0s]
152s Loading reference sequences...  [0s]
152s Masking reference...  [0.005s]
152s Initializing temporary storage...  [0s]
152s Building reference histograms...  [0.006s]
152s Allocating buffers...  [0s]
152s Processing query block 1, reference block 1/1, shape 1/16, index chunk 1/4.
152s Building reference seed array...  [0.001s]
152s Building query seed array...  [0.002s]
152s Computing hash join...  [0s]
152s Masking low complexity seeds...  [0s]
152s Searching alignments...  [0s]
152s Deallocating memory...  [0s]
152s Processing query block 1, reference block 1/1, shape 1/16, index chunk 2/4.
152s Building reference seed array...  [0.001s]
152s Building query seed array...  [0.002s]
152s Computing hash join...  [0s]
152s Masking low complexity seeds...  [0s]
152s Searching alignments...  [0s]
152s Deallocating memory...  [0s]
152s Processing query block 1, reference block 1/1, shape 1/16, index chunk 3/4.
152s Building reference seed array...  [0.001s]
152s Building query seed array...  [0.002s]
152s Computing hash join...  [0s]
152s Masking low complexity seeds...  [0s]
152s Searching alignments...  [0s]
152s Deallocating memory...  [0s]
152s Processing query block 1, reference block 1/1, shape 1/16, index chunk 4/4.
152s Building reference seed array...  [0.001s]
152s Building query seed array...  [0.002s]
152s Computing hash join...  [0s]
152s Masking low complexity seeds...  [0s]
152s Searching alignments...  [0s]
152s Deallocating memory...  [0s]
152s Processing query block 1, reference block 1/1, shape 2/16, index chunk 1/4.
152s Building reference seed array...  [0.001s]
152s Building query seed array...  [0.002s]
152s Computing hash join...  [0s]
152s Masking low complexity seeds...  [0s]
152s Searching alignments...  [0s]
152s Deallocating memory...  [0s]
152s Processing query block 1, reference block 1/1, shape 2/16, index chunk 2/4.
152s Building reference seed array...  [0.001s]
152s Building query seed array...  [0.002s]
152s Computing hash join...  [0s]
152s Masking low complexity seeds...  [0s]
152s Searching alignments...  [0s]
152s Deallocating memory...  [0s]
152s Processing query block 1, reference block 1/1, shape 2/16, index chunk 3/4.
152s Building reference seed array...  [0.001s]
152s Building query seed array...  [0.002s]
152s Computing hash join...  [0s]
152s Masking low complexity seeds...  [0s]
152s Searching alignments...  [0s]
152s Deallocating memory...  [0s]
152s Processing query block 1, reference block 1/1, shape 2/16, index chunk 4/4.
152s Building reference seed array...  [0.001s]
152s Building query seed array...  [0.002s]
152s Computing hash join...  [0s]
152s Masking low complexity seeds...  [0s]
152s Searching alignments...  [0s]
152s Deallocating memory...  [0s]
152s Processing query block 1, reference block 1/1, shape 3/16, index chunk 1/4.
152s Building reference seed array...  [0.001s]
152s Building query seed array...  [0.002s]
152s Computing hash join...  [0s]
152s Masking low complexity seeds...  [0s]
152s Searching alignments...  [0s]
152s Deallocating memory...  [0s]
152s Processing query block 1, reference block 1/1, shape 3/16, index chunk 2/4.
152s Building reference seed array...  [0.001s]
152s Building query seed array...  [0.002s]
152s Computing hash join...  [0s]
152s Masking low complexity seeds...  [0s]
152s Searching alignments...  [0s]
152s Deallocating memory...  [0s]
152s Processing query block 1, reference block 1/1, shape 3/16, index chunk 3/4.
152s Building reference seed array...  [0.001s]
152s Building query seed array...  [0.002s]
152s Computing hash join...  [0s]
152s Masking low complexity seeds...  [0s]
152s Searching alignments...  [0s]
152s Deallocating memory...  [0s]
152s Processing query block 1, reference block 1/1, shape 3/16, index chunk 4/4.
152s Building reference seed array...  [0.001s]
152s Building query seed array...  [0.002s]
152s Computing hash join...  [0s]
152s Masking low complexity seeds...  [0s]
152s Searching alignments...  [0s]
152s Deallocating memory...  [0s]
152s Processing query block 1, reference block 1/1, shape 4/16, index chunk 1/4.
152s Building reference seed array...  [0.001s]
152s Building query seed array...  [0.002s]
152s Computing hash join...  [0s]
152s Masking low complexity seeds...  [0s]
152s Searching alignments...  [0s]
152s Deallocating memory...  [0s]
152s Processing query block 1, reference block 1/1, shape 4/16, index chunk 2/4.
152s Building reference seed array...  [0.002s]
152s Building query seed array...  [0.002s]
152s Computing hash join...  [0.002s]
152s Masking low complexity seeds...  [0s]
152s Searching alignments...  [0s]
152s Deallocating memory...  [0s]
152s Processing query block 1, reference block 1/1, shape 4/16, index chunk 3/4.
152s Building reference seed array...  [0.002s]
152s Building query seed array...  [0.002s]
152s Computing hash join...  [0s]
152s Masking low complexity seeds...  [0s]
152s Searching alignments...  [0s]
152s Deallocating memory...  [0s]
152s Processing query block 1, reference block 1/1, shape 4/16, index chunk 4/4.
152s Building reference seed array...  [0.001s]
152s Building query seed array...  [0.002s]
152s Computing hash join...  [0s]
152s Masking low complexity seeds...  [0s]
152s Searching alignments...  [0s]
152s Deallocating memory...  [0s]
152s Processing query block 1, reference block 1/1, shape 5/16, index chunk 1/4.
152s Building reference seed array...  [0.001s]
152s Building query seed array...  [0.002s]
152s Computing hash join...  [0s]
152s Masking low complexity seeds...  [0s]
152s Searching alignments...  [0s]
152s Deallocating memory...  [0s]
152s Processing query block 1, reference block 1/1, shape 5/16, index chunk 2/4.
152s Building reference seed array...  [0.001s]
152s Building query seed array...  [0.002s]
152s Computing hash join...  [0s]
152s Masking low complexity seeds...  [0s]
152s Searching alignments...  [0s]
152s Deallocating memory...  [0s]
152s Processing query block 1, reference block 1/1, shape 5/16, index chunk 3/4.
152s Building reference seed array...  [0.001s]
152s Building query seed array...  [0.002s]
152s Computing hash join...  [0s]
152s Masking low complexity seeds...  [0s]
152s Searching alignments...  [0s]
152s Deallocating memory...  [0s]
152s Processing query block 1, reference block 1/1, shape 5/16, index chunk 4/4.
152s Building reference seed array...  [0.001s]
152s Building query seed array...  [0.002s]
152s Computing hash join...  [0s]
152s Masking low complexity seeds...  [0s]
152s Searching alignments...  [0s]
152s Deallocating memory...  [0s]
152s Processing query block 1, reference block 1/1, shape 6/16, index chunk 1/4.
152s Building reference seed array...  [0.001s]
152s Building query seed array...  [0.002s]
152s Computing hash join...  [0s]
152s Masking low complexity seeds...  [0s]
152s Searching alignments...  [0s]
152s Deallocating memory...  [0s]
152s Processing query block 1, reference block 1/1, shape 6/16, index chunk 2/4.
152s Building reference seed array...  [0.001s]
152s Building query seed array...  [0.002s]
152s Computing hash join...  [0s]
152s Masking low complexity seeds...  [0s]
152s Searching alignments...  [0s]
152s Deallocating memory...  [0s]
152s Processing query block 1, reference block 1/1, shape 6/16, index chunk 3/4.
152s Building reference seed array...  [0.001s]
152s Building query seed array...  [0.002s]
152s Computing hash join...  [0s]
152s Masking low complexity seeds...  [0s]
152s Searching alignments...  [0s]
152s Deallocating memory...  [0s]
152s Processing query block 1, reference block 1/1, shape 6/16, index chunk 4/4.
152s Building reference seed array...  [0.001s]
152s Building query seed array...  [0.002s]
152s Computing hash join...  [0s]
152s Masking low complexity seeds...  [0s]
152s Searching alignments...  [0s]
152s Deallocating memory...  [0s]
152s Processing query block 1, reference block 1/1, shape 7/16, index chunk 1/4.
152s Building reference seed array...  [0.001s]
152s Building query seed array...  [0.002s]
152s Computing hash join...  [0s]
152s Masking low complexity seeds...  [0s]
152s Searching alignments...  [0s]
152s Deallocating memory...  [0s]
152s Processing query block 1, reference block 1/1, shape 7/16, index chunk 2/4.
152s Building reference seed array...  [0.001s]
152s Building query seed array...  [0.002s]
152s Computing hash join...  [0s]
152s Masking low complexity seeds...  [0s]
152s Searching alignments...  [0s]
152s Deallocating memory...  [0s]
152s Processing query block 1, reference block 1/1, shape 7/16, index chunk 3/4.
152s Building reference seed array...  [0.001s]
152s Building query seed array...  [0.002s]
152s Computing hash join...  [0s]
152s Masking low complexity seeds...  [0s]
152s Searching alignments...  [0s]
152s Deallocating memory...  [0s]
152s Processing query block 1, reference block 1/1, shape 7/16, index chunk 4/4.
152s Building reference seed array...  [0.001s]
152s Building query seed array...  [0.002s]
152s Computing hash join...  [0s]
152s Masking low complexity seeds...  [0s]
152s Searching alignments...  [0s]
152s Deallocating memory...  [0s]
152s Processing query block 1, reference block 1/1, shape 8/16, index chunk 1/4.
152s Building reference seed array...  [0.001s]
152s Building query seed array...  [0.002s]
152s Computing hash join...  [0s]
152s Masking low complexity seeds...  [0s]
152s Searching alignments...  [0s]
152s Deallocating memory...  [0s]
152s Processing query block 1, reference block 1/1, shape 8/16, index chunk 2/4.
152s Building reference seed array...  [0.001s]
152s Building query seed array...  [0.002s]
152s Computing hash join...  [0s]
152s Masking low complexity seeds...  [0s]
152s Searching alignments...  [0s]
152s Deallocating memory...  [0s]
152s Processing query block 1, reference block 1/1, shape 8/16, index chunk 3/4.
152s Building reference seed array...  [0.001s]
152s Building query seed array...  [0.002s]
152s Computing hash join...  [0s]
152s Masking low complexity seeds...  [0s]
152s Searching alignments...  [0s]
152s Deallocating memory...  [0s]
152s Processing query block 1, reference block 1/1, shape 8/16, index chunk 4/4.
152s Building reference seed array...  [0.001s]
152s Building query seed array...  [0.002s]
152s Computing hash join...  [0s]
152s Masking low complexity seeds...  [0s]
152s Searching alignments...  [0s]
152s Deallocating memory...  [0s]
152s Processing query block 1, reference block 1/1, shape 9/16, index chunk 1/4.
152s Building reference seed array...  [0.001s]
152s Building query seed array...  [0.002s]
152s Computing hash join...  [0s]
152s Masking low complexity seeds...  [0s]
152s Searching alignments...  [0s]
152s Deallocating memory...  [0s]
152s Processing query block 1, reference block 1/1, shape 9/16, index chunk 2/4.
152s Building reference seed array...  [0.001s]
152s Building query seed array...  [0.002s]
152s Computing hash join...  [0s]
152s Masking low complexity seeds...  [0s]
152s Searching alignments...  [0s]
152s Deallocating memory...  [0s]
152s Processing query block 1, reference block 1/1, shape 9/16, index chunk 3/4.
152s Building reference seed array...  [0.001s]
152s Building query seed array...  [0.002s]
152s Computing hash join...  [0s]
152s Masking low complexity seeds...  [0s]
152s Searching alignments...  [0s]
152s Deallocating memory...  [0s]
152s Processing query block 1, reference block 1/1, shape 9/16, index chunk 4/4.
152s Building reference seed array...  [0.001s]
152s Building query seed array...  [0.002s]
152s Computing hash join...  [0s]
152s Masking low complexity seeds...  [0s]
152s Searching alignments...  [0s]
152s Deallocating memory...  [0s]
152s Processing query block 1, reference block 1/1, shape 10/16, index chunk 1/4.
152s Building reference seed array...  [0.001s]
152s Building query seed array...  [0.002s]
152s Computing hash join...  [0s]
152s Masking low complexity seeds...  [0s]
152s Searching alignments...  [0s]
152s Deallocating memory...  [0s]
152s Processing query block 1, reference block 1/1, shape 10/16, index chunk 2/4.
152s Building reference seed array...  [0.001s]
152s Building query seed array...  [0.002s]
152s Computing hash join...  [0s]
152s Masking low complexity seeds...  [0s]
152s Searching alignments...  [0s]
152s Deallocating memory...  [0s]
152s Processing query block 1, reference block 1/1, shape 10/16, index chunk 3/4.
152s Building reference seed array...  [0.001s]
152s Building query seed array...  [0.002s]
152s Computing hash join...  [0s]
152s Masking low complexity seeds...  [0s]
152s Searching alignments...  [0s]
152s Deallocating memory...  [0s]
152s Processing query block 1, reference block 1/1, shape 10/16, index chunk 4/4.
152s Building reference seed array...  [0.001s]
152s Building query seed array...  [0.002s]
152s Computing hash join...  [0s]
152s Masking low complexity seeds...  [0s]
152s Searching alignments...  [0s]
152s Deallocating memory...  [0s]
152s Processing query block 1, reference block 1/1, shape 11/16, index chunk 1/4.
152s Building reference seed array...  [0.001s]
152s Building query seed array...  [0.002s]
152s Computing hash join...  [0s]
152s Masking low complexity seeds...  [0s]
152s Searching alignments...  [0s]
152s Deallocating memory...  [0s]
152s Processing query block 1, reference block 1/1, shape 11/16, index chunk 2/4.
152s Building reference seed array...  [0.001s]
152s Building query seed array...  [0.002s]
152s Computing hash join...  [0s]
152s Masking low complexity seeds...  [0s]
152s Searching alignments...  [0s]
152s Deallocating memory...  [0s]
152s Processing query block 1, reference block 1/1, shape 11/16, index chunk 3/4.
152s Building reference seed array...  [0.001s]
152s Building query seed array...  [0.002s]
152s Computing hash join...  [0s]
152s Masking low complexity seeds...  [0s]
152s Searching alignments...  [0s]
152s Deallocating memory...  [0s]
152s Processing query block 1, reference block 1/1, shape 11/16, index chunk 4/4.
152s Building reference seed array...  [0.001s]
152s Building query seed array...  [0.002s]
152s Computing hash join...  [0s]
152s Masking low complexity seeds...  [0s]
152s Searching alignments...  [0.001s]
152s Deallocating memory...  [0s]
152s Processing query block 1, reference block 1/1, shape 12/16, index chunk 1/4.
152s Building reference seed array...  [0.001s]
152s Building query seed array...  [0.002s]
152s Computing hash join...  [0s]
152s Masking low complexity seeds...  [0s]
152s Searching alignments...  [0s]
152s Deallocating memory...  [0s]
152s Processing query block 1, reference block 1/1, shape 12/16, index chunk 2/4.
152s Building reference seed array...  [0.001s]
152s Building query seed array...  [0.003s]
152s Computing hash join...  [0s]
152s Masking low complexity seeds...  [0s]
152s Searching alignments...  [0.001s]
152s Deallocating memory...  [0s]
152s Processing query block 1, reference block 1/1, shape 12/16, index chunk 3/4.
152s Building reference seed array...  [0.001s]
152s Building query seed array...  [0.002s]
152s Computing hash join...  [0s]
152s Masking low complexity seeds...  [0s]
152s Searching alignments...  [0s]
152s Deallocating memory...  [0s]
152s Processing query block 1, reference block 1/1, shape 12/16, index chunk 4/4.
152s Building reference seed array...  [0.001s]
152s Building query seed array...  [0.002s]
152s Computing hash join...  [0s]
152s Masking low complexity seeds...  [0s]
152s Searching alignments...  [0s]
152s Deallocating memory...  [0s]
152s Processing query block 1, reference block 1/1, shape 13/16, index chunk 1/4.
152s Building reference seed array...  [0.001s]
152s Building query seed array...  [0.002s]
152s Computing hash join...  [0s]
152s Masking low complexity seeds...  [0s]
152s Searching alignments...  [0s]
152s Deallocating memory...  [0s]
152s Processing query block 1, reference block 1/1, shape 13/16, index chunk 2/4.
152s Building reference seed array...  [0.001s]
152s Building query seed array...  [0.002s]
152s Computing hash join...  [0s]
152s Masking low complexity seeds...  [0s]
152s Searching alignments...  [0s]
152s Deallocating memory...  [0s]
152s Processing query block 1, reference block 1/1, shape 13/16, index chunk 3/4.
152s Building reference seed array...  [0.001s]
152s Building query seed array...  [0.002s]
152s Computing hash join...  [0s]
152s Masking low complexity seeds...  [0s]
152s Searching alignments...  [0s]
152s Deallocating memory...  [0s]
152s Processing query block 1, reference block 1/1, shape 13/16, index chunk 4/4.
152s Building reference seed array...  [0.001s]
152s Building query seed array...  [0.002s]
152s Computing hash join...  [0s]
152s Masking low complexity seeds...  [0s]
152s Searching alignments...  [0s]
152s Deallocating memory...  [0s]
152s Processing query block 1, reference block 1/1, shape 14/16, index chunk 1/4.
152s Building reference seed array...  [0.001s]
152s Building query seed array...  [0.002s]
152s Computing hash join...  [0s]
152s Masking low complexity seeds...  [0s]
152s Searching alignments...  [0s]
152s Deallocating memory...  [0s]
152s Processing query block 1, reference block 1/1, shape 14/16, index chunk 2/4.
152s Building reference seed array...  [0.001s]
152s Building query seed array...  [0.002s]
152s Computing hash join...  [0s]
152s Masking low complexity seeds...  [0s]
152s Searching alignments...  [0s]
152s Deallocating memory...  [0s]
152s Processing query block 1, reference block 1/1, shape 14/16, index chunk 3/4.
152s Building reference seed array...  [0.001s]
152s Building query seed array...  [0.002s]
152s Computing hash join...  [0s]
152s Masking low complexity seeds...  [0s]
152s Searching alignments...  [0s]
152s Deallocating memory...  [0s]
152s Processing query block 1, reference block 1/1, shape 14/16, index chunk 4/4.
152s Building reference seed array...  [0.001s]
152s Building query seed array...  [0.002s]
152s Computing hash join...  [0s]
152s Masking low complexity seeds...  [0s]
152s Searching alignments...  [0s]
152s Deallocating memory...  [0s]
152s Processing query block 1, reference block 1/1, shape 15/16, index chunk 1/4.
152s Building reference seed array...  [0.001s]
152s Building query seed array...  [0.002s]
152s Computing hash join...  [0s]
152s Masking low complexity seeds...  [0s]
152s Searching alignments...  [0s]
152s Deallocating memory...  [0s]
152s Processing query block 1, reference block 1/1, shape 15/16, index chunk 2/4.
152s Building reference seed array...  [0.001s]
152s Building query seed array...  [0.002s]
152s Computing hash join...  [0s]
152s Masking low complexity seeds...  [0s]
152s Searching alignments...  [0s]
152s Deallocating memory...  [0s]
152s Processing query block 1, reference block 1/1, shape 15/16, index chunk 3/4.
152s Building reference seed array...  [0.001s]
152s Building query seed array...  [0.002s]
152s Computing hash join...  [0s]
152s Masking low complexity seeds...  [0s]
152s Searching alignments...  [0s]
152s Deallocating memory...  [0s]
152s Processing query block 1, reference block 1/1, shape 15/16, index chunk 4/4.
152s Building reference seed array...  [0.001s]
152s Building query seed array...  [0.002s]
152s Computing hash join...  [0s]
152s Masking low complexity seeds...  [0s]
152s Searching alignments...  [0.001s]
152s Deallocating memory...  [0s]
152s Processing query block 1, reference block 1/1, shape 16/16, index chunk 1/4.
152s Building reference seed array...  [0.001s]
152s Building query seed array...  [0.002s]
152s Computing hash join...  [0s]
152s Masking low complexity seeds...  [0s]
152s Searching alignments...  [0s]
152s Deallocating memory...  [0s]
152s Processing query block 1, reference block 1/1, shape 16/16, index chunk 2/4.
152s Building reference seed array...  [0.001s]
152s Building query seed array...  [0.002s]
152s Computing hash join...  [0s]
152s Masking low complexity seeds...  [0s]
152s Searching alignments...  [0s]
152s Deallocating memory...  [0s]
152s Processing query block 1, reference block 1/1, shape 16/16, index chunk 3/4.
152s Building reference seed array...  [0.001s]
152s Building query seed array...  [0.002s]
152s Computing hash join...  [0s]
152s Masking low complexity seeds...  [0s]
152s Searching alignments...  [0s]
152s Deallocating memory...  [0s]
152s Processing query block 1, reference block 1/1, shape 16/16, index chunk 4/4.
152s Building reference seed array...  [0.001s]
152s Building query seed array...  [0.002s]
152s Computing hash join...  [0s]
152s Masking low complexity seeds...  [0s]
152s Searching alignments...  [0s]
152s Deallocating memory...  [0s]
152s Deallocating buffers...  [0s]
152s Clearing query masking...  [0s]
152s Computing alignments... Loading trace points...  [0.002s]
152s Sorting trace points...  [0s]
152s Computing alignments...  [0.138s]
152s Deallocating buffers...  [0s]
152s Loading trace points...  [0s]
152s  [0.142s]
152s Deallocating reference...  [0s]
152s Loading reference sequences...  [0s]
152s Deallocating buffers...  [0s]
152s Deallocating queries...  [0s]
152s Loading query sequences...  [0s]
152s Closing the input file...  [0s]
152s Closing the output file...  [0s]
152s Closing the database...  [0s]
152s Cleaning up...  [0s]
152s Total time = 0.585s
152s Reported 131 pairwise alignments, 131 HSPs.
152s 109 queries aligned.
152s + diamond blastp --ignore-warnings --threads 1 --db test/C.faa.diamond --query test/C2.faa --out /tmp/tmp.gdxNHDneSh/C2.faa.vs.C.faa.diamond -e 1e-05 --outfmt 6 --sensitive
152s diamond v2.1.9.163 (C) Max Planck Society for the Advancement of Science, Benjamin Buchfink, University of Tuebingen
152s Documentation, support and updates available at http://www.diamondsearch.org
152s Please cite: http://dx.doi.org/10.1038/s41592-021-01101-x Nature Methods (2021)
152s 
152s #CPU threads: 1
152s Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1)
152s Temporary directory: /tmp/tmp.gdxNHDneSh
152s #Target sequences to report alignments for: 25
152s Opening the database...  [0s]
152s Database: test/C.faa.diamond (type: Diamond database, sequences: 109, letters: 51213)
152s Block size = 2000000000
152s Opening the input file...  [0s]
152s Opening the output file...  [0s]
152s Loading query sequences...  [0s]
152s Masking queries...  [0s]
152s Algorithm: Double-indexed
152s Building query histograms...  [0s]
152s Seeking in database...  [0s]
152s Loading reference sequences...  [0s]
152s Masking reference...  [0.011s]
152s Initializing temporary storage...  [0s]
152s Building reference histograms...  [0.012s]
152s Allocating buffers...  [0s]
152s Processing query block 1, reference block 1/1, shape 1/16, index chunk 1/4.
152s Building reference seed array...  [0.002s]
152s Building query seed array...  [0s]
152s Computing hash join...  [0s]
152s Masking low complexity seeds...  [0s]
152s Searching alignments...  [0s]
152s Deallocating memory...  [0s]
152s Processing query block 1, reference block 1/1, shape 1/16, index chunk 2/4.
152s Building reference seed array...  [0.002s]
152s Building query seed array...  [0s]
152s Computing hash join...  [0s]
152s Masking low complexity seeds...  [0s]
152s Searching alignments...  [0s]
152s Deallocating memory...  [0s]
152s Processing query block 1, reference block 1/1, shape 1/16, index chunk 3/4.
152s Building reference seed array...  [0.002s]
152s Building query seed array...  [0s]
152s Computing hash join...  [0s]
152s Masking low complexity seeds...  [0s]
152s Searching alignments...  [0s]
152s Deallocating memory...  [0s]
152s Processing query block 1, reference block 1/1, shape 1/16, index chunk 4/4.
152s Building reference seed array...  [0.002s]
152s Building query seed array...  [0s]
152s Computing hash join...  [0s]
152s Masking low complexity seeds...  [0s]
152s Searching alignments...  [0s]
152s Deallocating memory...  [0s]
152s Processing query block 1, reference block 1/1, shape 2/16, index chunk 1/4.
152s Building reference seed array...  [0.002s]
152s Building query seed array...  [0s]
152s Computing hash join...  [0s]
152s Masking low complexity seeds...  [0s]
152s Searching alignments...  [0s]
152s Deallocating memory...  [0s]
152s Processing query block 1, reference block 1/1, shape 2/16, index chunk 2/4.
152s Building reference seed array...  [0.002s]
152s Building query seed array...  [0s]
152s Computing hash join...  [0s]
152s Masking low complexity seeds...  [0s]
152s Searching alignments...  [0s]
152s Deallocating memory...  [0s]
152s Processing query block 1, reference block 1/1, shape 2/16, index chunk 3/4.
152s Building reference seed array...  [0.002s]
152s Building query seed array...  [0s]
152s Computing hash join...  [0s]
152s Masking low complexity seeds...  [0s]
152s Searching alignments...  [0s]
152s Deallocating memory...  [0s]
152s Processing query block 1, reference block 1/1, shape 2/16, index chunk 4/4.
152s Building reference seed array...  [0.002s]
152s Building query seed array...  [0s]
152s Computing hash join...  [0s]
152s Masking low complexity seeds...  [0s]
152s Searching alignments...  [0s]
152s Deallocating memory...  [0s]
152s Processing query block 1, reference block 1/1, shape 3/16, index chunk 1/4.
152s Building reference seed array...  [0.002s]
152s Building query seed array...  [0s]
152s Computing hash join...  [0s]
152s Masking low complexity seeds...  [0s]
152s Searching alignments...  [0s]
152s Deallocating memory...  [0s]
152s Processing query block 1, reference block 1/1, shape 3/16, index chunk 2/4.
152s Building reference seed array...  [0.002s]
152s Building query seed array...  [0s]
152s Computing hash join...  [0s]
152s Masking low complexity seeds...  [0s]
152s Searching alignments...  [0s]
152s Deallocating memory...  [0s]
152s Processing query block 1, reference block 1/1, shape 3/16, index chunk 3/4.
152s Building reference seed array...  [0.002s]
152s Building query seed array...  [0s]
152s Computing hash join...  [0s]
152s Masking low complexity seeds...  [0s]
152s Searching alignments...  [0s]
152s Deallocating memory...  [0s]
152s Processing query block 1, reference block 1/1, shape 3/16, index chunk 4/4.
152s Building reference seed array...  [0.002s]
152s Building query seed array...  [0s]
152s Computing hash join...  [0s]
152s Masking low complexity seeds...  [0s]
152s Searching alignments...  [0s]
152s Deallocating memory...  [0s]
152s Processing query block 1, reference block 1/1, shape 4/16, index chunk 1/4.
152s Building reference seed array...  [0.002s]
152s Building query seed array...  [0s]
152s Computing hash join...  [0s]
152s Masking low complexity seeds...  [0s]
152s Searching alignments...  [0s]
152s Deallocating memory...  [0s]
152s Processing query block 1, reference block 1/1, shape 4/16, index chunk 2/4.
152s Building reference seed array...  [0.002s]
152s Building query seed array...  [0s]
152s Computing hash join...  [0s]
152s Masking low complexity seeds...  [0s]
152s Searching alignments...  [0s]
152s Deallocating memory...  [0s]
152s Processing query block 1, reference block 1/1, shape 4/16, index chunk 3/4.
152s Building reference seed array...  [0.002s]
152s Building query seed array...  [0s]
152s Computing hash join...  [0s]
152s Masking low complexity seeds...  [0s]
152s Searching alignments...  [0s]
152s Deallocating memory...  [0s]
152s Processing query block 1, reference block 1/1, shape 4/16, index chunk 4/4.
152s Building reference seed array...  [0.002s]
152s Building query seed array...  [0s]
152s Computing hash join...  [0s]
152s Masking low complexity seeds...  [0s]
152s Searching alignments...  [0s]
152s Deallocating memory...  [0s]
152s Processing query block 1, reference block 1/1, shape 5/16, index chunk 1/4.
152s Building reference seed array...  [0.002s]
152s Building query seed array...  [0s]
152s Computing hash join...  [0s]
152s Masking low complexity seeds...  [0s]
152s Searching alignments...  [0s]
152s Deallocating memory...  [0s]
152s Processing query block 1, reference block 1/1, shape 5/16, index chunk 2/4.
152s Building reference seed array...  [0.002s]
152s Building query seed array...  [0s]
152s Computing hash join...  [0s]
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152s Searching alignments...  [0s]
152s Deallocating memory...  [0s]
152s Processing query block 1, reference block 1/1, shape 5/16, index chunk 3/4.
152s Building reference seed array...  [0.002s]
152s Building query seed array...  [0s]
152s Computing hash join...  [0s]
152s Masking low complexity seeds...  [0s]
152s Searching alignments...  [0s]
152s Deallocating memory...  [0s]
152s Processing query block 1, reference block 1/1, shape 5/16, index chunk 4/4.
152s Building reference seed array...  [0.002s]
152s Building query seed array...  [0s]
152s Computing hash join...  [0s]
152s Masking low complexity seeds...  [0s]
152s Searching alignments...  [0s]
152s Deallocating memory...  [0s]
152s Processing query block 1, reference block 1/1, shape 6/16, index chunk 1/4.
152s Building reference seed array...  [0.002s]
152s Building query seed array...  [0s]
152s Computing hash join...  [0s]
152s Masking low complexity seeds...  [0s]
152s Searching alignments...  [0s]
152s Deallocating memory...  [0s]
152s Processing query block 1, reference block 1/1, shape 6/16, index chunk 2/4.
152s Building reference seed array...  [0.002s]
152s Building query seed array...  [0s]
152s Computing hash join...  [0s]
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152s Searching alignments...  [0s]
152s Deallocating memory...  [0s]
152s Processing query block 1, reference block 1/1, shape 6/16, index chunk 3/4.
152s Building reference seed array...  [0.002s]
152s Building query seed array...  [0s]
152s Computing hash join...  [0s]
152s Masking low complexity seeds...  [0s]
152s Searching alignments...  [0s]
152s Deallocating memory...  [0s]
152s Processing query block 1, reference block 1/1, shape 6/16, index chunk 4/4.
152s Building reference seed array...  [0.002s]
152s Building query seed array...  [0s]
152s Computing hash join...  [0s]
152s Masking low complexity seeds...  [0s]
152s Searching alignments...  [0s]
152s Deallocating memory...  [0s]
152s Processing query block 1, reference block 1/1, shape 7/16, index chunk 1/4.
152s Building reference seed array...  [0.002s]
152s Building query seed array...  [0s]
152s Computing hash join...  [0s]
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152s Searching alignments...  [0s]
152s Deallocating memory...  [0s]
152s Processing query block 1, reference block 1/1, shape 7/16, index chunk 2/4.
152s Building reference seed array...  [0.002s]
152s Building query seed array...  [0s]
152s Computing hash join...  [0s]
152s Masking low complexity seeds...  [0s]
152s Searching alignments...  [0s]
152s Deallocating memory...  [0s]
152s Processing query block 1, reference block 1/1, shape 7/16, index chunk 3/4.
152s Building reference seed array...  [0.002s]
152s Building query seed array...  [0s]
152s Computing hash join...  [0s]
152s Masking low complexity seeds...  [0s]
152s Searching alignments...  [0s]
152s Deallocating memory...  [0s]
152s Processing query block 1, reference block 1/1, shape 7/16, index chunk 4/4.
152s Building reference seed array...  [0.002s]
152s Building query seed array...  [0s]
152s Computing hash join...  [0s]
152s Masking low complexity seeds...  [0s]
152s Searching alignments...  [0s]
152s Deallocating memory...  [0s]
152s Processing query block 1, reference block 1/1, shape 8/16, index chunk 1/4.
152s Building reference seed array...  [0.002s]
152s Building query seed array...  [0s]
152s Computing hash join...  [0s]
152s Masking low complexity seeds...  [0s]
152s Searching alignments...  [0s]
152s Deallocating memory...  [0s]
152s Processing query block 1, reference block 1/1, shape 8/16, index chunk 2/4.
152s Building reference seed array...  [0.002s]
152s Building query seed array...  [0s]
152s Computing hash join...  [0s]
152s Masking low complexity seeds...  [0s]
152s Searching alignments...  [0s]
152s Deallocating memory...  [0s]
152s Processing query block 1, reference block 1/1, shape 8/16, index chunk 3/4.
152s Building reference seed array...  [0.002s]
152s Building query seed array...  [0s]
152s Computing hash join...  [0s]
152s Masking low complexity seeds...  [0s]
152s Searching alignments...  [0s]
152s Deallocating memory...  [0s]
152s Processing query block 1, reference block 1/1, shape 8/16, index chunk 4/4.
152s Building reference seed array...  [0.002s]
152s Building query seed array...  [0s]
152s Computing hash join...  [0s]
152s Masking low complexity seeds...  [0s]
152s Searching alignments...  [0s]
152s Deallocating memory...  [0s]
152s Processing query block 1, reference block 1/1, shape 9/16, index chunk 1/4.
152s Building reference seed array...  [0.002s]
152s Building query seed array...  [0s]
152s Computing hash join...  [0s]
152s Masking low complexity seeds...  [0s]
152s Searching alignments...  [0s]
152s Deallocating memory...  [0s]
152s Processing query block 1, reference block 1/1, shape 9/16, index chunk 2/4.
152s Building reference seed array...  [0.002s]
152s Building query seed array...  [0s]
152s Computing hash join...  [0s]
152s Masking low complexity seeds...  [0s]
152s Searching alignments...  [0s]
152s Deallocating memory...  [0s]
152s Processing query block 1, reference block 1/1, shape 9/16, index chunk 3/4.
152s Building reference seed array...  [0.002s]
152s Building query seed array...  [0s]
152s Computing hash join...  [0s]
152s Masking low complexity seeds...  [0s]
152s Searching alignments...  [0s]
152s Deallocating memory...  [0s]
152s Processing query block 1, reference block 1/1, shape 9/16, index chunk 4/4.
152s Building reference seed array...  [0.002s]
152s Building query seed array...  [0s]
152s Computing hash join...  [0s]
152s Masking low complexity seeds...  [0s]
152s Searching alignments...  [0s]
152s Deallocating memory...  [0s]
152s Processing query block 1, reference block 1/1, shape 10/16, index chunk 1/4.
152s Building reference seed array...  [0.002s]
152s Building query seed array...  [0s]
152s Computing hash join...  [0s]
152s Masking low complexity seeds...  [0s]
152s Searching alignments...  [0s]
152s Deallocating memory...  [0s]
152s Processing query block 1, reference block 1/1, shape 10/16, index chunk 2/4.
152s Building reference seed array...  [0.002s]
152s Building query seed array...  [0s]
152s Computing hash join...  [0s]
152s Masking low complexity seeds...  [0s]
152s Searching alignments...  [0s]
152s Deallocating memory...  [0s]
152s Processing query block 1, reference block 1/1, shape 10/16, index chunk 3/4.
152s Building reference seed array...  [0.002s]
152s Building query seed array...  [0s]
152s Computing hash join...  [0s]
152s Masking low complexity seeds...  [0s]
152s Searching alignments...  [0s]
152s Deallocating memory...  [0s]
152s Processing query block 1, reference block 1/1, shape 10/16, index chunk 4/4.
152s Building reference seed array...  [0.002s]
152s Building query seed array...  [0s]
152s Computing hash join...  [0s]
152s Masking low complexity seeds...  [0s]
152s Searching alignments...  [0s]
152s Deallocating memory...  [0s]
152s Processing query block 1, reference block 1/1, shape 11/16, index chunk 1/4.
152s Building reference seed array...  [0.002s]
152s Building query seed array...  [0s]
152s Computing hash join...  [0s]
152s Masking low complexity seeds...  [0s]
152s Searching alignments...  [0s]
152s Deallocating memory...  [0s]
152s Processing query block 1, reference block 1/1, shape 11/16, index chunk 2/4.
152s Building reference seed array...  [0.002s]
152s Building query seed array...  [0s]
152s Computing hash join...  [0s]
152s Masking low complexity seeds...  [0s]
152s Searching alignments...  [0s]
152s Deallocating memory...  [0s]
152s Processing query block 1, reference block 1/1, shape 11/16, index chunk 3/4.
152s Building reference seed array...  [0.002s]
152s Building query seed array...  [0s]
152s Computing hash join...  [0s]
152s Masking low complexity seeds...  [0s]
152s Searching alignments...  [0s]
152s Deallocating memory...  [0s]
152s Processing query block 1, reference block 1/1, shape 11/16, index chunk 4/4.
152s Building reference seed array...  [0.002s]
152s Building query seed array...  [0s]
152s Computing hash join...  [0s]
152s Masking low complexity seeds...  [0s]
152s Searching alignments...  [0s]
152s Deallocating memory...  [0s]
152s Processing query block 1, reference block 1/1, shape 12/16, index chunk 1/4.
152s Building reference seed array...  [0.002s]
152s Building query seed array...  [0s]
152s Computing hash join...  [0s]
152s Masking low complexity seeds...  [0s]
152s Searching alignments...  [0s]
152s Deallocating memory...  [0s]
152s Processing query block 1, reference block 1/1, shape 12/16, index chunk 2/4.
152s Building reference seed array...  [0.002s]
152s Building query seed array...  [0s]
152s Computing hash join...  [0s]
152s Masking low complexity seeds...  [0s]
152s Searching alignments...  [0s]
152s Deallocating memory...  [0s]
152s Processing query block 1, reference block 1/1, shape 12/16, index chunk 3/4.
152s Building reference seed array...  [0.002s]
152s Building query seed array...  [0s]
152s Computing hash join...  [0s]
152s Masking low complexity seeds...  [0s]
152s Searching alignments...  [0s]
152s Deallocating memory...  [0s]
152s Processing query block 1, reference block 1/1, shape 12/16, index chunk 4/4.
152s Building reference seed array...  [0.002s]
152s Building query seed array...  [0s]
152s Computing hash join...  [0s]
152s Masking low complexity seeds...  [0s]
152s Searching alignments...  [0s]
152s Deallocating memory...  [0s]
152s Processing query block 1, reference block 1/1, shape 13/16, index chunk 1/4.
152s Building reference seed array...  [0.002s]
152s Building query seed array...  [0s]
152s Computing hash join...  [0s]
152s Masking low complexity seeds...  [0s]
152s Searching alignments...  [0s]
152s Deallocating memory...  [0s]
152s Processing query block 1, reference block 1/1, shape 13/16, index chunk 2/4.
152s Building reference seed array...  [0.002s]
152s Building query seed array...  [0s]
152s Computing hash join...  [0s]
152s Masking low complexity seeds...  [0s]
152s Searching alignments...  [0s]
152s Deallocating memory...  [0s]
152s Processing query block 1, reference block 1/1, shape 13/16, index chunk 3/4.
152s Building reference seed array...  [0.002s]
152s Building query seed array...  [0s]
152s Computing hash join...  [0s]
152s Masking low complexity seeds...  [0s]
152s Searching alignments...  [0s]
152s Deallocating memory...  [0s]
152s Processing query block 1, reference block 1/1, shape 13/16, index chunk 4/4.
152s Building reference seed array...  [0.002s]
152s Building query seed array...  [0s]
152s Computing hash join...  [0s]
152s Masking low complexity seeds...  [0s]
152s Searching alignments...  [0s]
152s Deallocating memory...  [0s]
152s Processing query block 1, reference block 1/1, shape 14/16, index chunk 1/4.
152s Building reference seed array...  [0.002s]
152s Building query seed array...  [0s]
152s Computing hash join...  [0s]
152s Masking low complexity seeds...  [0s]
152s Searching alignments...  [0s]
152s Deallocating memory...  [0s]
152s Processing query block 1, reference block 1/1, shape 14/16, index chunk 2/4.
152s Building reference seed array...  [0.002s]
152s Building query seed array...  [0s]
152s Computing hash join...  [0s]
152s Masking low complexity seeds...  [0s]
152s Searching alignments...  [0s]
152s Deallocating memory...  [0s]
152s Processing query block 1, reference block 1/1, shape 14/16, index chunk 3/4.
152s Building reference seed array...  [0.002s]
152s Building query seed array...  [0s]
152s Computing hash join...  [0s]
152s Masking low complexity seeds...  [0s]
152s Searching alignments...  [0s]
152s Deallocating memory...  [0s]
152s Processing query block 1, reference block 1/1, shape 14/16, index chunk 4/4.
152s Building reference seed array...  [0.002s]
152s Building query seed array...  [0s]
152s Computing hash join...  [0s]
152s Masking low complexity seeds...  [0s]
152s Searching alignments...  [0s]
152s Deallocating memory...  [0s]
152s Processing query block 1, reference block 1/1, shape 15/16, index chunk 1/4.
152s Building reference seed array...  [0.002s]
152s Building query seed array...  [0s]
152s Computing hash join...  [0s]
152s Masking low complexity seeds...  [0s]
152s Searching alignments...  [0s]
152s Deallocating memory...  [0s]
152s Processing query block 1, reference block 1/1, shape 15/16, index chunk 2/4.
152s Building reference seed array...  [0.002s]
152s Building query seed array...  [0s]
152s Computing hash join...  [0s]
152s Masking low complexity seeds...  [0s]
152s Searching alignments...  [0s]
152s Deallocating memory...  [0s]
152s Processing query block 1, reference block 1/1, shape 15/16, index chunk 3/4.
152s Building reference seed array...  [0.002s]
152s Building query seed array...  [0s]
152s Computing hash join...  [0s]
152s Masking low complexity seeds...  [0s]
152s Searching alignments...  [0s]
152s Deallocating memory...  [0s]
152s Processing query block 1, reference block 1/1, shape 15/16, index chunk 4/4.
152s Building reference seed array...  [0.002s]
152s Building query seed array...  [0s]
152s Computing hash join...  [0s]
152s Masking low complexity seeds...  [0s]
152s Searching alignments...  [0s]
152s Deallocating memory...  [0s]
152s Processing query block 1, reference block 1/1, shape 16/16, index chunk 1/4.
152s Building reference seed array...  [0.002s]
152s Building query seed array...  [0s]
152s Computing hash join...  [0s]
152s Masking low complexity seeds...  [0s]
152s Searching alignments...  [0s]
152s Deallocating memory...  [0s]
152s Processing query block 1, reference block 1/1, shape 16/16, index chunk 2/4.
152s Building reference seed array...  [0.002s]
152s Building query seed array...  [0s]
152s Computing hash join...  [0s]
152s Masking low complexity seeds...  [0s]
152s Searching alignments...  [0s]
152s Deallocating memory...  [0s]
152s Processing query block 1, reference block 1/1, shape 16/16, index chunk 3/4.
152s Building reference seed array...  [0.002s]
152s Building query seed array...  [0s]
152s Computing hash join...  [0s]
152s Masking low complexity seeds...  [0s]
152s Searching alignments...  [0s]
152s Deallocating memory...  [0s]
152s Processing query block 1, reference block 1/1, shape 16/16, index chunk 4/4.
152s Building reference seed array...  [0.002s]
152s Building query seed array...  [0s]
152s Computing hash join...  [0s]
152s Masking low complexity seeds...  [0s]
152s Searching alignments...  [0s]
152s Deallocating memory...  [0s]
152s Deallocating buffers...  [0s]
152s Clearing query masking...  [0s]
152s Computing alignments... Loading trace points...  [0s]
152s Sorting trace points...  [0s]
152s Computing alignments...  [0.001s]
152s Deallocating buffers...  [0s]
152s Loading trace points...  [0s]
152s  [0.002s]
152s Deallocating reference...  [0s]
152s Loading reference sequences...  [0s]
152s Deallocating buffers...  [0s]
152s Deallocating queries...  [0s]
152s Loading query sequences...  [0s]
152s Closing the input file...  [0s]
152s Closing the output file...  [0s]
152s Closing the database...  [0s]
152s Cleaning up...  [0s]
152s Total time = 0.298s
152s Reported 1 pairwise alignments, 1 HSPs.
152s 1 queries aligned.
152s + diamond blastp --threads 1 --db test/C2.faa.diamond --query test/C.faa --out /tmp/tmp.gdxNHDneSh/C.faa.vs.C2.faa.diamond -e 1e-05 --outfmt 6 --sensitive
152s diamond v2.1.9.163 (C) Max Planck Society for the Advancement of Science, Benjamin Buchfink, University of Tuebingen
152s Documentation, support and updates available at http://www.diamondsearch.org
152s Please cite: http://dx.doi.org/10.1038/s41592-021-01101-x Nature Methods (2021)
152s 
152s #CPU threads: 1
152s Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1)
152s Temporary directory: /tmp/tmp.gdxNHDneSh
152s #Target sequences to report alignments for: 25
152s Opening the database...  [0s]
152s Database: test/C2.faa.diamond (type: Diamond database, sequences: 2, letters: 726)
152s Block size = 2000000000
152s Opening the input file...  [0s]
152s Opening the output file...  [0s]
152s Loading query sequences...  [0s]
152s Masking queries...  [0.013s]
152s Algorithm: Double-indexed
153s Building query histograms...  [0.012s]
153s Seeking in database...  [0s]
153s Loading reference sequences...  [0s]
153s Masking reference...  [0s]
153s Initializing temporary storage...  [0s]
153s Building reference histograms...  [0s]
153s Allocating buffers...  [0s]
153s Processing query block 1, reference block 1/1, shape 1/16, index chunk 1/4.
153s Building reference seed array...  [0s]
153s Building query seed array...  [0.002s]
153s Computing hash join...  [0s]
153s Masking low complexity seeds...  [0s]
153s Searching alignments...  [0s]
153s Deallocating memory...  [0s]
153s Processing query block 1, reference block 1/1, shape 1/16, index chunk 2/4.
153s Building reference seed array...  [0s]
153s Building query seed array...  [0.002s]
153s Computing hash join...  [0s]
153s Masking low complexity seeds...  [0s]
153s Searching alignments...  [0s]
153s Deallocating memory...  [0s]
153s Processing query block 1, reference block 1/1, shape 1/16, index chunk 3/4.
153s Building reference seed array...  [0s]
153s Building query seed array...  [0.002s]
153s Computing hash join...  [0s]
153s Masking low complexity seeds...  [0s]
153s Searching alignments...  [0s]
153s Deallocating memory...  [0s]
153s Processing query block 1, reference block 1/1, shape 1/16, index chunk 4/4.
153s Building reference seed array...  [0s]
153s Building query seed array...  [0.002s]
153s Computing hash join...  [0s]
153s Masking low complexity seeds...  [0s]
153s Searching alignments...  [0s]
153s Deallocating memory...  [0s]
153s Processing query block 1, reference block 1/1, shape 2/16, index chunk 1/4.
153s Building reference seed array...  [0s]
153s Building query seed array...  [0.002s]
153s Computing hash join...  [0s]
153s Masking low complexity seeds...  [0s]
153s Searching alignments...  [0s]
153s Deallocating memory...  [0s]
153s Processing query block 1, reference block 1/1, shape 2/16, index chunk 2/4.
153s Building reference seed array...  [0s]
153s Building query seed array...  [0.002s]
153s Computing hash join...  [0s]
153s Masking low complexity seeds...  [0s]
153s Searching alignments...  [0s]
153s Deallocating memory...  [0s]
153s Processing query block 1, reference block 1/1, shape 2/16, index chunk 3/4.
153s Building reference seed array...  [0s]
153s Building query seed array...  [0.002s]
153s Computing hash join...  [0s]
153s Masking low complexity seeds...  [0s]
153s Searching alignments...  [0s]
153s Deallocating memory...  [0s]
153s Processing query block 1, reference block 1/1, shape 2/16, index chunk 4/4.
153s Building reference seed array...  [0s]
153s Building query seed array...  [0.002s]
153s Computing hash join...  [0s]
153s Masking low complexity seeds...  [0s]
153s Searching alignments...  [0s]
153s Deallocating memory...  [0s]
153s Processing query block 1, reference block 1/1, shape 3/16, index chunk 1/4.
153s Building reference seed array...  [0s]
153s Building query seed array...  [0.002s]
153s Computing hash join...  [0s]
153s Masking low complexity seeds...  [0s]
153s Searching alignments...  [0s]
153s Deallocating memory...  [0s]
153s Processing query block 1, reference block 1/1, shape 3/16, index chunk 2/4.
153s Building reference seed array...  [0s]
153s Building query seed array...  [0.002s]
153s Computing hash join...  [0s]
153s Masking low complexity seeds...  [0s]
153s Searching alignments...  [0s]
153s Deallocating memory...  [0s]
153s Processing query block 1, reference block 1/1, shape 3/16, index chunk 3/4.
153s Building reference seed array...  [0s]
153s Building query seed array...  [0.002s]
153s Computing hash join...  [0s]
153s Masking low complexity seeds...  [0s]
153s Searching alignments...  [0s]
153s Deallocating memory...  [0s]
153s Processing query block 1, reference block 1/1, shape 3/16, index chunk 4/4.
153s Building reference seed array...  [0s]
153s Building query seed array...  [0.002s]
153s Computing hash join...  [0s]
153s Masking low complexity seeds...  [0s]
153s Searching alignments...  [0s]
153s Deallocating memory...  [0s]
153s Processing query block 1, reference block 1/1, shape 4/16, index chunk 1/4.
153s Building reference seed array...  [0s]
153s Building query seed array...  [0.002s]
153s Computing hash join...  [0s]
153s Masking low complexity seeds...  [0s]
153s Searching alignments...  [0s]
153s Deallocating memory...  [0s]
153s Processing query block 1, reference block 1/1, shape 4/16, index chunk 2/4.
153s Building reference seed array...  [0s]
153s Building query seed array...  [0.002s]
153s Computing hash join...  [0s]
153s Masking low complexity seeds...  [0s]
153s Searching alignments...  [0s]
153s Deallocating memory...  [0s]
153s Processing query block 1, reference block 1/1, shape 4/16, index chunk 3/4.
153s Building reference seed array...  [0s]
153s Building query seed array...  [0.002s]
153s Computing hash join...  [0s]
153s Masking low complexity seeds...  [0s]
153s Searching alignments...  [0s]
153s Deallocating memory...  [0s]
153s Processing query block 1, reference block 1/1, shape 4/16, index chunk 4/4.
153s Building reference seed array...  [0s]
153s Building query seed array...  [0.002s]
153s Computing hash join...  [0s]
153s Masking low complexity seeds...  [0s]
153s Searching alignments...  [0s]
153s Deallocating memory...  [0s]
153s Processing query block 1, reference block 1/1, shape 5/16, index chunk 1/4.
153s Building reference seed array...  [0s]
153s Building query seed array...  [0.003s]
153s Computing hash join...  [0s]
153s Masking low complexity seeds...  [0s]
153s Searching alignments...  [0s]
153s Deallocating memory...  [0s]
153s Processing query block 1, reference block 1/1, shape 5/16, index chunk 2/4.
153s Building reference seed array...  [0s]
153s Building query seed array...  [0.002s]
153s Computing hash join...  [0s]
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153s Searching alignments...  [0s]
153s Deallocating memory...  [0s]
153s Processing query block 1, reference block 1/1, shape 5/16, index chunk 3/4.
153s Building reference seed array...  [0s]
153s Building query seed array...  [0.002s]
153s Computing hash join...  [0s]
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153s Searching alignments...  [0s]
153s Deallocating memory...  [0s]
153s Processing query block 1, reference block 1/1, shape 5/16, index chunk 4/4.
153s Building reference seed array...  [0s]
153s Building query seed array...  [0.002s]
153s Computing hash join...  [0s]
153s Masking low complexity seeds...  [0s]
153s Searching alignments...  [0s]
153s Deallocating memory...  [0s]
153s Processing query block 1, reference block 1/1, shape 6/16, index chunk 1/4.
153s Building reference seed array...  [0s]
153s Building query seed array...  [0.002s]
153s Computing hash join...  [0s]
153s Masking low complexity seeds...  [0s]
153s Searching alignments...  [0s]
153s Deallocating memory...  [0s]
153s Processing query block 1, reference block 1/1, shape 6/16, index chunk 2/4.
153s Building reference seed array...  [0s]
153s Building query seed array...  [0.002s]
153s Computing hash join...  [0s]
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153s Searching alignments...  [0s]
153s Deallocating memory...  [0s]
153s Processing query block 1, reference block 1/1, shape 6/16, index chunk 3/4.
153s Building reference seed array...  [0s]
153s Building query seed array...  [0.002s]
153s Computing hash join...  [0s]
153s Masking low complexity seeds...  [0s]
153s Searching alignments...  [0s]
153s Deallocating memory...  [0s]
153s Processing query block 1, reference block 1/1, shape 6/16, index chunk 4/4.
153s Building reference seed array...  [0s]
153s Building query seed array...  [0.002s]
153s Computing hash join...  [0s]
153s Masking low complexity seeds...  [0s]
153s Searching alignments...  [0s]
153s Deallocating memory...  [0s]
153s Processing query block 1, reference block 1/1, shape 7/16, index chunk 1/4.
153s Building reference seed array...  [0s]
153s Building query seed array...  [0.002s]
153s Computing hash join...  [0s]
153s Masking low complexity seeds...  [0s]
153s Searching alignments...  [0s]
153s Deallocating memory...  [0s]
153s Processing query block 1, reference block 1/1, shape 7/16, index chunk 2/4.
153s Building reference seed array...  [0s]
153s Building query seed array...  [0.002s]
153s Computing hash join...  [0s]
153s Masking low complexity seeds...  [0s]
153s Searching alignments...  [0s]
153s Deallocating memory...  [0s]
153s Processing query block 1, reference block 1/1, shape 7/16, index chunk 3/4.
153s Building reference seed array...  [0s]
153s Building query seed array...  [0.002s]
153s Computing hash join...  [0s]
153s Masking low complexity seeds...  [0s]
153s Searching alignments...  [0s]
153s Deallocating memory...  [0s]
153s Processing query block 1, reference block 1/1, shape 7/16, index chunk 4/4.
153s Building reference seed array...  [0s]
153s Building query seed array...  [0.002s]
153s Computing hash join...  [0s]
153s Masking low complexity seeds...  [0s]
153s Searching alignments...  [0s]
153s Deallocating memory...  [0s]
153s Processing query block 1, reference block 1/1, shape 8/16, index chunk 1/4.
153s Building reference seed array...  [0s]
153s Building query seed array...  [0.002s]
153s Computing hash join...  [0s]
153s Masking low complexity seeds...  [0s]
153s Searching alignments...  [0s]
153s Deallocating memory...  [0s]
153s Processing query block 1, reference block 1/1, shape 8/16, index chunk 2/4.
153s Building reference seed array...  [0s]
153s Building query seed array...  [0.002s]
153s Computing hash join...  [0s]
153s Masking low complexity seeds...  [0s]
153s Searching alignments...  [0s]
153s Deallocating memory...  [0s]
153s Processing query block 1, reference block 1/1, shape 8/16, index chunk 3/4.
153s Building reference seed array...  [0s]
153s Building query seed array...  [0.002s]
153s Computing hash join...  [0s]
153s Masking low complexity seeds...  [0s]
153s Searching alignments...  [0s]
153s Deallocating memory...  [0s]
153s Processing query block 1, reference block 1/1, shape 8/16, index chunk 4/4.
153s Building reference seed array...  [0s]
153s Building query seed array...  [0.002s]
153s Computing hash join...  [0s]
153s Masking low complexity seeds...  [0s]
153s Searching alignments...  [0s]
153s Deallocating memory...  [0s]
153s Processing query block 1, reference block 1/1, shape 9/16, index chunk 1/4.
153s Building reference seed array...  [0s]
153s Building query seed array...  [0.002s]
153s Computing hash join...  [0s]
153s Masking low complexity seeds...  [0s]
153s Searching alignments...  [0s]
153s Deallocating memory...  [0s]
153s Processing query block 1, reference block 1/1, shape 9/16, index chunk 2/4.
153s Building reference seed array...  [0s]
153s Building query seed array...  [0.003s]
153s Computing hash join...  [0s]
153s Masking low complexity seeds...  [0s]
153s Searching alignments...  [0s]
153s Deallocating memory...  [0s]
153s Processing query block 1, reference block 1/1, shape 9/16, index chunk 3/4.
153s Building reference seed array...  [0s]
153s Building query seed array...  [0.002s]
153s Computing hash join...  [0s]
153s Masking low complexity seeds...  [0s]
153s Searching alignments...  [0s]
153s Deallocating memory...  [0s]
153s Processing query block 1, reference block 1/1, shape 9/16, index chunk 4/4.
153s Building reference seed array...  [0s]
153s Building query seed array...  [0.002s]
153s Computing hash join...  [0s]
153s Masking low complexity seeds...  [0s]
153s Searching alignments...  [0s]
153s Deallocating memory...  [0s]
153s Processing query block 1, reference block 1/1, shape 10/16, index chunk 1/4.
153s Building reference seed array...  [0s]
153s Building query seed array...  [0.002s]
153s Computing hash join...  [0s]
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153s Searching alignments...  [0s]
153s Deallocating memory...  [0s]
153s Processing query block 1, reference block 1/1, shape 10/16, index chunk 2/4.
153s Building reference seed array...  [0s]
153s Building query seed array...  [0.002s]
153s Computing hash join...  [0s]
153s Masking low complexity seeds...  [0s]
153s Searching alignments...  [0s]
153s Deallocating memory...  [0s]
153s Processing query block 1, reference block 1/1, shape 10/16, index chunk 3/4.
153s Building reference seed array...  [0s]
153s Building query seed array...  [0.002s]
153s Computing hash join...  [0s]
153s Masking low complexity seeds...  [0s]
153s Searching alignments...  [0s]
153s Deallocating memory...  [0s]
153s Processing query block 1, reference block 1/1, shape 10/16, index chunk 4/4.
153s Building reference seed array...  [0s]
153s Building query seed array...  [0.002s]
153s Computing hash join...  [0s]
153s Masking low complexity seeds...  [0s]
153s Searching alignments...  [0s]
153s Deallocating memory...  [0s]
153s Processing query block 1, reference block 1/1, shape 11/16, index chunk 1/4.
153s Building reference seed array...  [0s]
153s Building query seed array...  [0.002s]
153s Computing hash join...  [0s]
153s Masking low complexity seeds...  [0s]
153s Searching alignments...  [0s]
153s Deallocating memory...  [0s]
153s Processing query block 1, reference block 1/1, shape 11/16, index chunk 2/4.
153s Building reference seed array...  [0s]
153s Building query seed array...  [0.002s]
153s Computing hash join...  [0s]
153s Masking low complexity seeds...  [0s]
153s Searching alignments...  [0s]
153s Deallocating memory...  [0s]
153s Processing query block 1, reference block 1/1, shape 11/16, index chunk 3/4.
153s Building reference seed array...  [0s]
153s Building query seed array...  [0.002s]
153s Computing hash join...  [0s]
153s Masking low complexity seeds...  [0s]
153s Searching alignments...  [0s]
153s Deallocating memory...  [0s]
153s Processing query block 1, reference block 1/1, shape 11/16, index chunk 4/4.
153s Building reference seed array...  [0s]
153s Building query seed array...  [0.002s]
153s Computing hash join...  [0s]
153s Masking low complexity seeds...  [0s]
153s Searching alignments...  [0s]
153s Deallocating memory...  [0s]
153s Processing query block 1, reference block 1/1, shape 12/16, index chunk 1/4.
153s Building reference seed array...  [0s]
153s Building query seed array...  [0.002s]
153s Computing hash join...  [0s]
153s Masking low complexity seeds...  [0s]
153s Searching alignments...  [0s]
153s Deallocating memory...  [0s]
153s Processing query block 1, reference block 1/1, shape 12/16, index chunk 2/4.
153s Building reference seed array...  [0s]
153s Building query seed array...  [0.002s]
153s Computing hash join...  [0s]
153s Masking low complexity seeds...  [0s]
153s Searching alignments...  [0s]
153s Deallocating memory...  [0s]
153s Processing query block 1, reference block 1/1, shape 12/16, index chunk 3/4.
153s Building reference seed array...  [0s]
153s Building query seed array...  [0.002s]
153s Computing hash join...  [0s]
153s Masking low complexity seeds...  [0s]
153s Searching alignments...  [0s]
153s Deallocating memory...  [0s]
153s Processing query block 1, reference block 1/1, shape 12/16, index chunk 4/4.
153s Building reference seed array...  [0s]
153s Building query seed array...  [0.002s]
153s Computing hash join...  [0s]
153s Masking low complexity seeds...  [0s]
153s Searching alignments...  [0s]
153s Deallocating memory...  [0s]
153s Processing query block 1, reference block 1/1, shape 13/16, index chunk 1/4.
153s Building reference seed array...  [0s]
153s Building query seed array...  [0.002s]
153s Computing hash join...  [0s]
153s Masking low complexity seeds...  [0s]
153s Searching alignments...  [0s]
153s Deallocating memory...  [0s]
153s Processing query block 1, reference block 1/1, shape 13/16, index chunk 2/4.
153s Building reference seed array...  [0s]
153s Building query seed array...  [0.002s]
153s Computing hash join...  [0s]
153s Masking low complexity seeds...  [0s]
153s Searching alignments...  [0s]
153s Deallocating memory...  [0s]
153s Processing query block 1, reference block 1/1, shape 13/16, index chunk 3/4.
153s Building reference seed array...  [0s]
153s Building query seed array...  [0.002s]
153s Computing hash join...  [0s]
153s Masking low complexity seeds...  [0s]
153s Searching alignments...  [0s]
153s Deallocating memory...  [0s]
153s Processing query block 1, reference block 1/1, shape 13/16, index chunk 4/4.
153s Building reference seed array...  [0s]
153s Building query seed array...  [0.002s]
153s Computing hash join...  [0s]
153s Masking low complexity seeds...  [0s]
153s Searching alignments...  [0s]
153s Deallocating memory...  [0s]
153s Processing query block 1, reference block 1/1, shape 14/16, index chunk 1/4.
153s Building reference seed array...  [0s]
153s Building query seed array...  [0.002s]
153s Computing hash join...  [0s]
153s Masking low complexity seeds...  [0s]
153s Searching alignments...  [0s]
153s Deallocating memory...  [0s]
153s Processing query block 1, reference block 1/1, shape 14/16, index chunk 2/4.
153s Building reference seed array...  [0s]
153s Building query seed array...  [0.002s]
153s Computing hash join...  [0s]
153s Masking low complexity seeds...  [0s]
153s Searching alignments...  [0s]
153s Deallocating memory...  [0s]
153s Processing query block 1, reference block 1/1, shape 14/16, index chunk 3/4.
153s Building reference seed array...  [0s]
153s Building query seed array...  [0.002s]
153s Computing hash join...  [0s]
153s Masking low complexity seeds...  [0s]
153s Searching alignments...  [0s]
153s Deallocating memory...  [0s]
153s Processing query block 1, reference block 1/1, shape 14/16, index chunk 4/4.
153s Building reference seed array...  [0s]
153s Building query seed array...  [0.002s]
153s Computing hash join...  [0s]
153s Masking low complexity seeds...  [0s]
153s Searching alignments...  [0s]
153s Deallocating memory...  [0s]
153s Processing query block 1, reference block 1/1, shape 15/16, index chunk 1/4.
153s Building reference seed array...  [0s]
153s Building query seed array...  [0.002s]
153s Computing hash join...  [0s]
153s Masking low complexity seeds...  [0s]
153s Searching alignments...  [0s]
153s Deallocating memory...  [0s]
153s Processing query block 1, reference block 1/1, shape 15/16, index chunk 2/4.
153s Building reference seed array...  [0s]
153s Building query seed array...  [0.002s]
153s Computing hash join...  [0s]
153s Masking low complexity seeds...  [0s]
153s Searching alignments...  [0s]
153s Deallocating memory...  [0s]
153s Processing query block 1, reference block 1/1, shape 15/16, index chunk 3/4.
153s Building reference seed array...  [0s]
153s Building query seed array...  [0.002s]
153s Computing hash join...  [0s]
153s Masking low complexity seeds...  [0s]
153s Searching alignments...  [0s]
153s Deallocating memory...  [0s]
153s Processing query block 1, reference block 1/1, shape 15/16, index chunk 4/4.
153s Building reference seed array...  [0s]
153s Building query seed array...  [0.002s]
153s Computing hash join...  [0s]
153s Masking low complexity seeds...  [0s]
153s Searching alignments...  [0s]
153s Deallocating memory...  [0s]
153s Processing query block 1, reference block 1/1, shape 16/16, index chunk 1/4.
153s Building reference seed array...  [0s]
153s Building query seed array...  [0.002s]
153s Computing hash join...  [0s]
153s Masking low complexity seeds...  [0s]
153s Searching alignments...  [0s]
153s Deallocating memory...  [0s]
153s Processing query block 1, reference block 1/1, shape 16/16, index chunk 2/4.
153s Building reference seed array...  [0s]
153s Building query seed array...  [0.002s]
153s Computing hash join...  [0s]
153s Masking low complexity seeds...  [0s]
153s Searching alignments...  [0s]
153s Deallocating memory...  [0s]
153s Processing query block 1, reference block 1/1, shape 16/16, index chunk 3/4.
153s Building reference seed array...  [0s]
153s Building query seed array...  [0.002s]
153s Computing hash join...  [0s]
153s Masking low complexity seeds...  [0s]
153s Searching alignments...  [0s]
153s Deallocating memory...  [0s]
153s Processing query block 1, reference block 1/1, shape 16/16, index chunk 4/4.
153s Building reference seed array...  [0s]
153s Building query seed array...  [0.002s]
153s Computing hash join...  [0s]
153s Masking low complexity seeds...  [0s]
153s Searching alignments...  [0s]
153s Deallocating memory...  [0s]
153s Deallocating buffers...  [0s]
153s Clearing query masking...  [0s]
153s Computing alignments... Loading trace points...  [0s]
153s Sorting trace points...  [0s]
153s Computing alignments...  [0.001s]
153s Deallocating buffers...  [0s]
153s Loading trace points...  [0s]
153s  [0.002s]
153s Deallocating reference...  [0s]
153s Loading reference sequences...  [0s]
153s Deallocating buffers...  [0s]
153s Deallocating queries...  [0s]
153s Loading query sequences...  [0s]
153s Closing the input file...  [0s]
153s Closing the output file...  [0s]
153s Closing the database...  [0s]
153s Cleaning up...  [0s]
153s Total time = 0.34s
153s Reported 1 pairwise alignments, 1 HSPs.
153s 1 queries aligned.
153s + diamond blastp --threads 1 --db test/E.faa.diamond --query test/L.faa --out /tmp/tmp.gdxNHDneSh/L.faa.vs.E.faa.diamond -e 1e-05 --outfmt 6 --sensitive
153s diamond v2.1.9.163 (C) Max Planck Society for the Advancement of Science, Benjamin Buchfink, University of Tuebingen
153s Documentation, support and updates available at http://www.diamondsearch.org
153s Please cite: http://dx.doi.org/10.1038/s41592-021-01101-x Nature Methods (2021)
153s 
153s #CPU threads: 1
153s Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1)
153s Temporary directory: /tmp/tmp.gdxNHDneSh
153s #Target sequences to report alignments for: 25
153s Opening the database...  [0s]
153s Database: test/E.faa.diamond (type: Diamond database, sequences: 72, letters: 54509)
153s Block size = 2000000000
153s Opening the input file...  [0s]
153s Opening the output file...  [0s]
153s Loading query sequences...  [0s]
153s Masking queries...  [0.008s]
153s Algorithm: Double-indexed
153s Building query histograms...  [0.006s]
153s Seeking in database...  [0s]
153s Loading reference sequences...  [0s]
153s Masking reference...  [0.012s]
153s Initializing temporary storage...  [0s]
153s Building reference histograms...  [0.013s]
153s Allocating buffers...  [0s]
153s Processing query block 1, reference block 1/1, shape 1/16, index chunk 1/4.
153s Building reference seed array...  [0.002s]
153s Building query seed array...  [0.001s]
153s Computing hash join...  [0s]
153s Masking low complexity seeds...  [0s]
153s Searching alignments...  [0.001s]
153s Deallocating memory...  [0s]
153s Processing query block 1, reference block 1/1, shape 1/16, index chunk 2/4.
153s Building reference seed array...  [0.002s]
153s Building query seed array...  [0.001s]
153s Computing hash join...  [0s]
153s Masking low complexity seeds...  [0s]
153s Searching alignments...  [0s]
153s Deallocating memory...  [0s]
153s Processing query block 1, reference block 1/1, shape 1/16, index chunk 3/4.
153s Building reference seed array...  [0.002s]
153s Building query seed array...  [0.001s]
153s Computing hash join...  [0s]
153s Masking low complexity seeds...  [0s]
153s Searching alignments...  [0s]
153s Deallocating memory...  [0s]
153s Processing query block 1, reference block 1/1, shape 1/16, index chunk 4/4.
153s Building reference seed array...  [0.002s]
153s Building query seed array...  [0.001s]
153s Computing hash join...  [0s]
153s Masking low complexity seeds...  [0s]
153s Searching alignments...  [0s]
153s Deallocating memory...  [0s]
153s Processing query block 1, reference block 1/1, shape 2/16, index chunk 1/4.
153s Building reference seed array...  [0.002s]
153s Building query seed array...  [0.001s]
153s Computing hash join...  [0s]
153s Masking low complexity seeds...  [0s]
153s Searching alignments...  [0s]
153s Deallocating memory...  [0s]
153s Processing query block 1, reference block 1/1, shape 2/16, index chunk 2/4.
153s Building reference seed array...  [0.002s]
153s Building query seed array...  [0.001s]
153s Computing hash join...  [0s]
153s Masking low complexity seeds...  [0s]
153s Searching alignments...  [0s]
153s Deallocating memory...  [0s]
153s Processing query block 1, reference block 1/1, shape 2/16, index chunk 3/4.
153s Building reference seed array...  [0.002s]
153s Building query seed array...  [0.001s]
153s Computing hash join...  [0s]
153s Masking low complexity seeds...  [0s]
153s Searching alignments...  [0s]
153s Deallocating memory...  [0s]
153s Processing query block 1, reference block 1/1, shape 2/16, index chunk 4/4.
153s Building reference seed array...  [0.002s]
153s Building query seed array...  [0.001s]
153s Computing hash join...  [0s]
153s Masking low complexity seeds...  [0s]
153s Searching alignments...  [0s]
153s Deallocating memory...  [0s]
153s Processing query block 1, reference block 1/1, shape 3/16, index chunk 1/4.
153s Building reference seed array...  [0.002s]
153s Building query seed array...  [0.001s]
153s Computing hash join...  [0s]
153s Masking low complexity seeds...  [0s]
153s Searching alignments...  [0s]
153s Deallocating memory...  [0s]
153s Processing query block 1, reference block 1/1, shape 3/16, index chunk 2/4.
153s Building reference seed array...  [0.003s]
153s Building query seed array...  [0.001s]
153s Computing hash join...  [0s]
153s Masking low complexity seeds...  [0s]
153s Searching alignments...  [0s]
153s Deallocating memory...  [0s]
153s Processing query block 1, reference block 1/1, shape 3/16, index chunk 3/4.
153s Building reference seed array...  [0.002s]
153s Building query seed array...  [0.001s]
153s Computing hash join...  [0s]
153s Masking low complexity seeds...  [0s]
153s Searching alignments...  [0s]
153s Deallocating memory...  [0s]
153s Processing query block 1, reference block 1/1, shape 3/16, index chunk 4/4.
153s Building reference seed array...  [0.002s]
153s Building query seed array...  [0.001s]
153s Computing hash join...  [0s]
153s Masking low complexity seeds...  [0s]
153s Searching alignments...  [0s]
153s Deallocating memory...  [0s]
153s Processing query block 1, reference block 1/1, shape 4/16, index chunk 1/4.
153s Building reference seed array...  [0.002s]
153s Building query seed array...  [0.001s]
153s Computing hash join...  [0s]
153s Masking low complexity seeds...  [0s]
153s Searching alignments...  [0s]
153s Deallocating memory...  [0s]
153s Processing query block 1, reference block 1/1, shape 4/16, index chunk 2/4.
153s Building reference seed array...  [0.002s]
153s Building query seed array...  [0.001s]
153s Computing hash join...  [0s]
153s Masking low complexity seeds...  [0s]
153s Searching alignments...  [0s]
153s Deallocating memory...  [0s]
153s Processing query block 1, reference block 1/1, shape 4/16, index chunk 3/4.
153s Building reference seed array...  [0.003s]
153s Building query seed array...  [0.001s]
153s Computing hash join...  [0s]
153s Masking low complexity seeds...  [0s]
153s Searching alignments...  [0s]
153s Deallocating memory...  [0s]
153s Processing query block 1, reference block 1/1, shape 4/16, index chunk 4/4.
153s Building reference seed array...  [0.002s]
153s Building query seed array...  [0.001s]
153s Computing hash join...  [0s]
153s Masking low complexity seeds...  [0s]
153s Searching alignments...  [0s]
153s Deallocating memory...  [0s]
153s Processing query block 1, reference block 1/1, shape 5/16, index chunk 1/4.
153s Building reference seed array...  [0.002s]
153s Building query seed array...  [0.001s]
153s Computing hash join...  [0s]
153s Masking low complexity seeds...  [0s]
153s Searching alignments...  [0.001s]
153s Deallocating memory...  [0s]
153s Processing query block 1, reference block 1/1, shape 5/16, index chunk 2/4.
153s Building reference seed array...  [0.002s]
153s Building query seed array...  [0.001s]
153s Computing hash join...  [0s]
153s Masking low complexity seeds...  [0s]
153s Searching alignments...  [0.001s]
153s Deallocating memory...  [0s]
153s Processing query block 1, reference block 1/1, shape 5/16, index chunk 3/4.
153s Building reference seed array...  [0.002s]
153s Building query seed array...  [0.001s]
153s Computing hash join...  [0s]
153s Masking low complexity seeds...  [0s]
153s Searching alignments...  [0s]
153s Deallocating memory...  [0s]
153s Processing query block 1, reference block 1/1, shape 5/16, index chunk 4/4.
153s Building reference seed array...  [0.002s]
153s Building query seed array...  [0.001s]
153s Computing hash join...  [0s]
153s Masking low complexity seeds...  [0s]
153s Searching alignments...  [0s]
153s Deallocating memory...  [0s]
153s Processing query block 1, reference block 1/1, shape 6/16, index chunk 1/4.
153s Building reference seed array...  [0.002s]
153s Building query seed array...  [0.001s]
153s Computing hash join...  [0s]
153s Masking low complexity seeds...  [0s]
153s Searching alignments...  [0s]
153s Deallocating memory...  [0s]
153s Processing query block 1, reference block 1/1, shape 6/16, index chunk 2/4.
153s Building reference seed array...  [0.002s]
153s Building query seed array...  [0.001s]
153s Computing hash join...  [0s]
153s Masking low complexity seeds...  [0s]
153s Searching alignments...  [0s]
153s Deallocating memory...  [0s]
153s Processing query block 1, reference block 1/1, shape 6/16, index chunk 3/4.
153s Building reference seed array...  [0.002s]
153s Building query seed array...  [0.001s]
153s Computing hash join...  [0s]
153s Masking low complexity seeds...  [0s]
153s Searching alignments...  [0s]
153s Deallocating memory...  [0s]
153s Processing query block 1, reference block 1/1, shape 6/16, index chunk 4/4.
153s Building reference seed array...  [0.002s]
153s Building query seed array...  [0.001s]
153s Computing hash join...  [0s]
153s Masking low complexity seeds...  [0s]
153s Searching alignments...  [0s]
153s Deallocating memory...  [0s]
153s Processing query block 1, reference block 1/1, shape 7/16, index chunk 1/4.
153s Building reference seed array...  [0.002s]
153s Building query seed array...  [0.001s]
153s Computing hash join...  [0s]
153s Masking low complexity seeds...  [0s]
153s Searching alignments...  [0s]
153s Deallocating memory...  [0s]
153s Processing query block 1, reference block 1/1, shape 7/16, index chunk 2/4.
153s Building reference seed array...  [0.002s]
153s Building query seed array...  [0.001s]
153s Computing hash join...  [0s]
153s Masking low complexity seeds...  [0s]
153s Searching alignments...  [0s]
153s Deallocating memory...  [0s]
153s Processing query block 1, reference block 1/1, shape 7/16, index chunk 3/4.
153s Building reference seed array...  [0.002s]
153s Building query seed array...  [0.001s]
153s Computing hash join...  [0s]
153s Masking low complexity seeds...  [0s]
153s Searching alignments...  [0s]
153s Deallocating memory...  [0s]
153s Processing query block 1, reference block 1/1, shape 7/16, index chunk 4/4.
153s Building reference seed array...  [0.002s]
153s Building query seed array...  [0.001s]
153s Computing hash join...  [0s]
153s Masking low complexity seeds...  [0s]
153s Searching alignments...  [0s]
153s Deallocating memory...  [0s]
153s Processing query block 1, reference block 1/1, shape 8/16, index chunk 1/4.
153s Building reference seed array...  [0.002s]
153s Building query seed array...  [0.001s]
153s Computing hash join...  [0s]
153s Masking low complexity seeds...  [0s]
153s Searching alignments...  [0s]
153s Deallocating memory...  [0s]
153s Processing query block 1, reference block 1/1, shape 8/16, index chunk 2/4.
153s Building reference seed array...  [0.002s]
153s Building query seed array...  [0.001s]
153s Computing hash join...  [0s]
153s Masking low complexity seeds...  [0s]
153s Searching alignments...  [0s]
153s Deallocating memory...  [0s]
153s Processing query block 1, reference block 1/1, shape 8/16, index chunk 3/4.
153s Building reference seed array...  [0.002s]
153s Building query seed array...  [0.001s]
153s Computing hash join...  [0s]
153s Masking low complexity seeds...  [0s]
153s Searching alignments...  [0s]
153s Deallocating memory...  [0s]
153s Processing query block 1, reference block 1/1, shape 8/16, index chunk 4/4.
153s Building reference seed array...  [0.002s]
153s Building query seed array...  [0.001s]
153s Computing hash join...  [0s]
153s Masking low complexity seeds...  [0s]
153s Searching alignments...  [0s]
153s Deallocating memory...  [0s]
153s Processing query block 1, reference block 1/1, shape 9/16, index chunk 1/4.
153s Building reference seed array...  [0.002s]
153s Building query seed array...  [0.001s]
153s Computing hash join...  [0s]
153s Masking low complexity seeds...  [0s]
153s Searching alignments...  [0s]
153s Deallocating memory...  [0s]
153s Processing query block 1, reference block 1/1, shape 9/16, index chunk 2/4.
153s Building reference seed array...  [0.002s]
153s Building query seed array...  [0.001s]
153s Computing hash join...  [0s]
153s Masking low complexity seeds...  [0s]
153s Searching alignments...  [0s]
153s Deallocating memory...  [0s]
153s Processing query block 1, reference block 1/1, shape 9/16, index chunk 3/4.
153s Building reference seed array...  [0.002s]
153s Building query seed array...  [0.001s]
153s Computing hash join...  [0s]
153s Masking low complexity seeds...  [0s]
153s Searching alignments...  [0s]
153s Deallocating memory...  [0s]
153s Processing query block 1, reference block 1/1, shape 9/16, index chunk 4/4.
153s Building reference seed array...  [0.002s]
153s Building query seed array...  [0.001s]
153s Computing hash join...  [0s]
153s Masking low complexity seeds...  [0s]
153s Searching alignments...  [0s]
153s Deallocating memory...  [0s]
153s Processing query block 1, reference block 1/1, shape 10/16, index chunk 1/4.
153s Building reference seed array...  [0.002s]
153s Building query seed array...  [0.001s]
153s Computing hash join...  [0s]
153s Masking low complexity seeds...  [0s]
153s Searching alignments...  [0s]
153s Deallocating memory...  [0s]
153s Processing query block 1, reference block 1/1, shape 10/16, index chunk 2/4.
153s Building reference seed array...  [0.002s]
153s Building query seed array...  [0.001s]
153s Computing hash join...  [0s]
153s Masking low complexity seeds...  [0s]
153s Searching alignments...  [0s]
153s Deallocating memory...  [0s]
153s Processing query block 1, reference block 1/1, shape 10/16, index chunk 3/4.
153s Building reference seed array...  [0.003s]
153s Building query seed array...  [0.001s]
153s Computing hash join...  [0s]
153s Masking low complexity seeds...  [0s]
153s Searching alignments...  [0s]
153s Deallocating memory...  [0s]
153s Processing query block 1, reference block 1/1, shape 10/16, index chunk 4/4.
153s Building reference seed array...  [0.002s]
153s Building query seed array...  [0.001s]
153s Computing hash join...  [0s]
153s Masking low complexity seeds...  [0s]
153s Searching alignments...  [0s]
153s Deallocating memory...  [0s]
153s Processing query block 1, reference block 1/1, shape 11/16, index chunk 1/4.
153s Building reference seed array...  [0.002s]
153s Building query seed array...  [0.001s]
153s Computing hash join...  [0s]
153s Masking low complexity seeds...  [0s]
153s Searching alignments...  [0.001s]
153s Deallocating memory...  [0s]
153s Processing query block 1, reference block 1/1, shape 11/16, index chunk 2/4.
153s Building reference seed array...  [0.003s]
153s Building query seed array...  [0.001s]
153s Computing hash join...  [0s]
153s Masking low complexity seeds...  [0s]
153s Searching alignments...  [0.001s]
153s Deallocating memory...  [0s]
153s Processing query block 1, reference block 1/1, shape 11/16, index chunk 3/4.
153s Building reference seed array...  [0.003s]
153s Building query seed array...  [0.001s]
153s Computing hash join...  [0s]
153s Masking low complexity seeds...  [0s]
153s Searching alignments...  [0s]
153s Deallocating memory...  [0s]
153s Processing query block 1, reference block 1/1, shape 11/16, index chunk 4/4.
153s Building reference seed array...  [0.002s]
153s Building query seed array...  [0.001s]
153s Computing hash join...  [0s]
153s Masking low complexity seeds...  [0s]
153s Searching alignments...  [0s]
153s Deallocating memory...  [0s]
153s Processing query block 1, reference block 1/1, shape 12/16, index chunk 1/4.
153s Building reference seed array...  [0.002s]
153s Building query seed array...  [0.001s]
153s Computing hash join...  [0s]
153s Masking low complexity seeds...  [0s]
153s Searching alignments...  [0s]
153s Deallocating memory...  [0s]
153s Processing query block 1, reference block 1/1, shape 12/16, index chunk 2/4.
153s Building reference seed array...  [0.002s]
153s Building query seed array...  [0.001s]
153s Computing hash join...  [0s]
153s Masking low complexity seeds...  [0s]
153s Searching alignments...  [0s]
153s Deallocating memory...  [0s]
153s Processing query block 1, reference block 1/1, shape 12/16, index chunk 3/4.
153s Building reference seed array...  [0.002s]
153s Building query seed array...  [0.001s]
153s Computing hash join...  [0s]
153s Masking low complexity seeds...  [0s]
153s Searching alignments...  [0s]
153s Deallocating memory...  [0s]
153s Processing query block 1, reference block 1/1, shape 12/16, index chunk 4/4.
153s Building reference seed array...  [0.002s]
153s Building query seed array...  [0.001s]
153s Computing hash join...  [0s]
153s Masking low complexity seeds...  [0s]
153s Searching alignments...  [0s]
153s Deallocating memory...  [0s]
153s Processing query block 1, reference block 1/1, shape 13/16, index chunk 1/4.
153s Building reference seed array...  [0.002s]
153s Building query seed array...  [0.001s]
153s Computing hash join...  [0s]
153s Masking low complexity seeds...  [0s]
153s Searching alignments...  [0s]
153s Deallocating memory...  [0s]
153s Processing query block 1, reference block 1/1, shape 13/16, index chunk 2/4.
153s Building reference seed array...  [0.002s]
153s Building query seed array...  [0.001s]
153s Computing hash join...  [0s]
153s Masking low complexity seeds...  [0s]
153s Searching alignments...  [0s]
153s Deallocating memory...  [0s]
153s Processing query block 1, reference block 1/1, shape 13/16, index chunk 3/4.
153s Building reference seed array...  [0.002s]
153s Building query seed array...  [0.001s]
153s Computing hash join...  [0s]
153s Masking low complexity seeds...  [0s]
153s Searching alignments...  [0s]
153s Deallocating memory...  [0s]
153s Processing query block 1, reference block 1/1, shape 13/16, index chunk 4/4.
153s Building reference seed array...  [0.002s]
153s Building query seed array...  [0.001s]
153s Computing hash join...  [0s]
153s Masking low complexity seeds...  [0s]
153s Searching alignments...  [0s]
153s Deallocating memory...  [0s]
153s Processing query block 1, reference block 1/1, shape 14/16, index chunk 1/4.
153s Building reference seed array...  [0.002s]
153s Building query seed array...  [0.001s]
153s Computing hash join...  [0s]
153s Masking low complexity seeds...  [0s]
153s Searching alignments...  [0s]
153s Deallocating memory...  [0s]
153s Processing query block 1, reference block 1/1, shape 14/16, index chunk 2/4.
153s Building reference seed array...  [0.002s]
153s Building query seed array...  [0.001s]
153s Computing hash join...  [0s]
153s Masking low complexity seeds...  [0s]
153s Searching alignments...  [0s]
153s Deallocating memory...  [0s]
153s Processing query block 1, reference block 1/1, shape 14/16, index chunk 3/4.
153s Building reference seed array...  [0.002s]
153s Building query seed array...  [0.001s]
153s Computing hash join...  [0s]
153s Masking low complexity seeds...  [0s]
153s Searching alignments...  [0s]
153s Deallocating memory...  [0s]
153s Processing query block 1, reference block 1/1, shape 14/16, index chunk 4/4.
153s Building reference seed array...  [0.002s]
153s Building query seed array...  [0.001s]
153s Computing hash join...  [0s]
153s Masking low complexity seeds...  [0s]
153s Searching alignments...  [0s]
153s Deallocating memory...  [0s]
153s Processing query block 1, reference block 1/1, shape 15/16, index chunk 1/4.
153s Building reference seed array...  [0.002s]
153s Building query seed array...  [0.001s]
153s Computing hash join...  [0s]
153s Masking low complexity seeds...  [0s]
153s Searching alignments...  [0s]
153s Deallocating memory...  [0s]
153s Processing query block 1, reference block 1/1, shape 15/16, index chunk 2/4.
153s Building reference seed array...  [0.002s]
153s Building query seed array...  [0.001s]
153s Computing hash join...  [0s]
153s Masking low complexity seeds...  [0s]
153s Searching alignments...  [0s]
153s Deallocating memory...  [0s]
153s Processing query block 1, reference block 1/1, shape 15/16, index chunk 3/4.
153s Building reference seed array...  [0.002s]
153s Building query seed array...  [0.001s]
153s Computing hash join...  [0s]
153s Masking low complexity seeds...  [0s]
153s Searching alignments...  [0s]
153s Deallocating memory...  [0s]
153s Processing query block 1, reference block 1/1, shape 15/16, index chunk 4/4.
153s Building reference seed array...  [0.002s]
153s Building query seed array...  [0.001s]
153s Computing hash join...  [0s]
153s Masking low complexity seeds...  [0s]
153s Searching alignments...  [0s]
153s Deallocating memory...  [0s]
153s Processing query block 1, reference block 1/1, shape 16/16, index chunk 1/4.
153s Building reference seed array...  [0.002s]
153s Building query seed array...  [0.001s]
153s Computing hash join...  [0s]
153s Masking low complexity seeds...  [0s]
153s Searching alignments...  [0s]
153s Deallocating memory...  [0s]
153s Processing query block 1, reference block 1/1, shape 16/16, index chunk 2/4.
153s Building reference seed array...  [0.002s]
153s Building query seed array...  [0.001s]
153s Computing hash join...  [0s]
153s Masking low complexity seeds...  [0s]
153s Searching alignments...  [0s]
153s Deallocating memory...  [0s]
153s Processing query block 1, reference block 1/1, shape 16/16, index chunk 3/4.
153s Building reference seed array...  [0.002s]
153s Building query seed array...  [0.001s]
153s Computing hash join...  [0s]
153s Masking low complexity seeds...  [0s]
153s Searching alignments...  [0s]
153s Deallocating memory...  [0s]
153s Processing query block 1, reference block 1/1, shape 16/16, index chunk 4/4.
153s Building reference seed array...  [0.002s]
153s Building query seed array...  [0.001s]
153s Computing hash join...  [0s]
153s Masking low complexity seeds...  [0s]
153s Searching alignments...  [0s]
153s Deallocating memory...  [0s]
153s Deallocating buffers...  [0s]
153s Clearing query masking...  [0s]
153s Computing alignments... Loading trace points...  [0.001s]
153s Sorting trace points...  [0s]
155s Computing alignments...  [1.329s]
155s Deallocating buffers...  [0s]
155s Loading trace points...  [0s]
155s  [1.331s]
155s Deallocating reference...  [0s]
155s Loading reference sequences...  [0s]
155s Deallocating buffers...  [0s]
155s Deallocating queries...  [0s]
155s Loading query sequences...  [0s]
155s Closing the input file...  [0s]
155s Closing the output file...  [0s]
155s Closing the database...  [0s]
155s Cleaning up...  [0s]
155s Total time = 1.785s
155s Reported 489 pairwise alignments, 489 HSPs.
155s 32 queries aligned.
155s + diamond blastp --threads 1 --db test/L.faa.diamond --query test/E.faa --out /tmp/tmp.gdxNHDneSh/E.faa.vs.L.faa.diamond -e 1e-05 --outfmt 6 --sensitive
155s diamond v2.1.9.163 (C) Max Planck Society for the Advancement of Science, Benjamin Buchfink, University of Tuebingen
155s Documentation, support and updates available at http://www.diamondsearch.org
155s Please cite: http://dx.doi.org/10.1038/s41592-021-01101-x Nature Methods (2021)
155s 
155s #CPU threads: 1
155s Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1)
155s Temporary directory: /tmp/tmp.gdxNHDneSh
155s #Target sequences to report alignments for: 25
155s Opening the database...  [0s]
155s Database: test/L.faa.diamond (type: Diamond database, sequences: 40, letters: 26652)
155s Block size = 2000000000
155s Opening the input file...  [0s]
155s Opening the output file...  [0s]
155s Loading query sequences...  [0s]
155s Masking queries...  [0.012s]
155s Algorithm: Double-indexed
155s Building query histograms...  [0.013s]
155s Seeking in database...  [0s]
155s Loading reference sequences...  [0s]
155s Masking reference...  [0.006s]
155s Initializing temporary storage...  [0s]
155s Building reference histograms...  [0.006s]
155s Allocating buffers...  [0s]
155s Processing query block 1, reference block 1/1, shape 1/16, index chunk 1/4.
155s Building reference seed array...  [0.001s]
155s Building query seed array...  [0.002s]
155s Computing hash join...  [0s]
155s Masking low complexity seeds...  [0s]
155s Searching alignments...  [0.001s]
155s Deallocating memory...  [0s]
155s Processing query block 1, reference block 1/1, shape 1/16, index chunk 2/4.
155s Building reference seed array...  [0.001s]
155s Building query seed array...  [0.002s]
155s Computing hash join...  [0s]
155s Masking low complexity seeds...  [0s]
155s Searching alignments...  [0.001s]
155s Deallocating memory...  [0s]
155s Processing query block 1, reference block 1/1, shape 1/16, index chunk 3/4.
155s Building reference seed array...  [0.001s]
155s Building query seed array...  [0.002s]
155s Computing hash join...  [0s]
155s Masking low complexity seeds...  [0s]
155s Searching alignments...  [0.001s]
155s Deallocating memory...  [0s]
155s Processing query block 1, reference block 1/1, shape 1/16, index chunk 4/4.
155s Building reference seed array...  [0.001s]
155s Building query seed array...  [0.002s]
155s Computing hash join...  [0s]
155s Masking low complexity seeds...  [0s]
155s Searching alignments...  [0s]
155s Deallocating memory...  [0s]
155s Processing query block 1, reference block 1/1, shape 2/16, index chunk 1/4.
155s Building reference seed array...  [0.001s]
155s Building query seed array...  [0.002s]
155s Computing hash join...  [0s]
155s Masking low complexity seeds...  [0s]
155s Searching alignments...  [0s]
155s Deallocating memory...  [0s]
155s Processing query block 1, reference block 1/1, shape 2/16, index chunk 2/4.
155s Building reference seed array...  [0.001s]
155s Building query seed array...  [0.002s]
155s Computing hash join...  [0s]
155s Masking low complexity seeds...  [0s]
155s Searching alignments...  [0s]
155s Deallocating memory...  [0s]
155s Processing query block 1, reference block 1/1, shape 2/16, index chunk 3/4.
155s Building reference seed array...  [0.001s]
155s Building query seed array...  [0.002s]
155s Computing hash join...  [0s]
155s Masking low complexity seeds...  [0s]
155s Searching alignments...  [0s]
155s Deallocating memory...  [0s]
155s Processing query block 1, reference block 1/1, shape 2/16, index chunk 4/4.
155s Building reference seed array...  [0.001s]
155s Building query seed array...  [0.002s]
155s Computing hash join...  [0s]
155s Masking low complexity seeds...  [0s]
155s Searching alignments...  [0s]
155s Deallocating memory...  [0s]
155s Processing query block 1, reference block 1/1, shape 3/16, index chunk 1/4.
155s Building reference seed array...  [0.001s]
155s Building query seed array...  [0.002s]
155s Computing hash join...  [0s]
155s Masking low complexity seeds...  [0s]
155s Searching alignments...  [0s]
155s Deallocating memory...  [0s]
155s Processing query block 1, reference block 1/1, shape 3/16, index chunk 2/4.
155s Building reference seed array...  [0.001s]
155s Building query seed array...  [0.002s]
155s Computing hash join...  [0s]
155s Masking low complexity seeds...  [0s]
155s Searching alignments...  [0s]
155s Deallocating memory...  [0s]
155s Processing query block 1, reference block 1/1, shape 3/16, index chunk 3/4.
155s Building reference seed array...  [0.001s]
155s Building query seed array...  [0.002s]
155s Computing hash join...  [0s]
155s Masking low complexity seeds...  [0s]
155s Searching alignments...  [0s]
155s Deallocating memory...  [0s]
155s Processing query block 1, reference block 1/1, shape 3/16, index chunk 4/4.
155s Building reference seed array...  [0.001s]
155s Building query seed array...  [0.002s]
155s Computing hash join...  [0s]
155s Masking low complexity seeds...  [0s]
155s Searching alignments...  [0s]
155s Deallocating memory...  [0s]
155s Processing query block 1, reference block 1/1, shape 4/16, index chunk 1/4.
155s Building reference seed array...  [0.001s]
155s Building query seed array...  [0.002s]
155s Computing hash join...  [0s]
155s Masking low complexity seeds...  [0s]
155s Searching alignments...  [0s]
155s Deallocating memory...  [0s]
155s Processing query block 1, reference block 1/1, shape 4/16, index chunk 2/4.
155s Building reference seed array...  [0.001s]
155s Building query seed array...  [0.002s]
155s Computing hash join...  [0s]
155s Masking low complexity seeds...  [0s]
155s Searching alignments...  [0s]
155s Deallocating memory...  [0s]
155s Processing query block 1, reference block 1/1, shape 4/16, index chunk 3/4.
155s Building reference seed array...  [0.001s]
155s Building query seed array...  [0.002s]
155s Computing hash join...  [0s]
155s Masking low complexity seeds...  [0s]
155s Searching alignments...  [0s]
155s Deallocating memory...  [0s]
155s Processing query block 1, reference block 1/1, shape 4/16, index chunk 4/4.
155s Building reference seed array...  [0.001s]
155s Building query seed array...  [0.002s]
155s Computing hash join...  [0s]
155s Masking low complexity seeds...  [0s]
155s Searching alignments...  [0s]
155s Deallocating memory...  [0s]
155s Processing query block 1, reference block 1/1, shape 5/16, index chunk 1/4.
155s Building reference seed array...  [0.001s]
155s Building query seed array...  [0.002s]
155s Computing hash join...  [0s]
155s Masking low complexity seeds...  [0s]
155s Searching alignments...  [0s]
155s Deallocating memory...  [0s]
155s Processing query block 1, reference block 1/1, shape 5/16, index chunk 2/4.
155s Building reference seed array...  [0.001s]
155s Building query seed array...  [0.002s]
155s Computing hash join...  [0s]
155s Masking low complexity seeds...  [0s]
155s Searching alignments...  [0s]
155s Deallocating memory...  [0s]
155s Processing query block 1, reference block 1/1, shape 5/16, index chunk 3/4.
155s Building reference seed array...  [0.001s]
155s Building query seed array...  [0.002s]
155s Computing hash join...  [0s]
155s Masking low complexity seeds...  [0s]
155s Searching alignments...  [0s]
155s Deallocating memory...  [0s]
155s Processing query block 1, reference block 1/1, shape 5/16, index chunk 4/4.
155s Building reference seed array...  [0.001s]
155s Building query seed array...  [0.002s]
155s Computing hash join...  [0s]
155s Masking low complexity seeds...  [0s]
155s Searching alignments...  [0s]
155s Deallocating memory...  [0s]
155s Processing query block 1, reference block 1/1, shape 6/16, index chunk 1/4.
155s Building reference seed array...  [0.001s]
155s Building query seed array...  [0.002s]
155s Computing hash join...  [0s]
155s Masking low complexity seeds...  [0s]
155s Searching alignments...  [0s]
155s Deallocating memory...  [0s]
155s Processing query block 1, reference block 1/1, shape 6/16, index chunk 2/4.
155s Building reference seed array...  [0.001s]
155s Building query seed array...  [0.002s]
155s Computing hash join...  [0s]
155s Masking low complexity seeds...  [0s]
155s Searching alignments...  [0s]
155s Deallocating memory...  [0s]
155s Processing query block 1, reference block 1/1, shape 6/16, index chunk 3/4.
155s Building reference seed array...  [0.001s]
155s Building query seed array...  [0.002s]
155s Computing hash join...  [0s]
155s Masking low complexity seeds...  [0s]
155s Searching alignments...  [0s]
155s Deallocating memory...  [0s]
155s Processing query block 1, reference block 1/1, shape 6/16, index chunk 4/4.
155s Building reference seed array...  [0.001s]
155s Building query seed array...  [0.002s]
155s Computing hash join...  [0s]
155s Masking low complexity seeds...  [0s]
155s Searching alignments...  [0s]
155s Deallocating memory...  [0s]
155s Processing query block 1, reference block 1/1, shape 7/16, index chunk 1/4.
155s Building reference seed array...  [0.001s]
155s Building query seed array...  [0.002s]
155s Computing hash join...  [0s]
155s Masking low complexity seeds...  [0s]
155s Searching alignments...  [0s]
155s Deallocating memory...  [0s]
155s Processing query block 1, reference block 1/1, shape 7/16, index chunk 2/4.
155s Building reference seed array...  [0.001s]
155s Building query seed array...  [0.002s]
155s Computing hash join...  [0s]
155s Masking low complexity seeds...  [0s]
155s Searching alignments...  [0s]
155s Deallocating memory...  [0s]
155s Processing query block 1, reference block 1/1, shape 7/16, index chunk 3/4.
155s Building reference seed array...  [0.001s]
155s Building query seed array...  [0.003s]
155s Computing hash join...  [0s]
155s Masking low complexity seeds...  [0s]
155s Searching alignments...  [0s]
155s Deallocating memory...  [0s]
155s Processing query block 1, reference block 1/1, shape 7/16, index chunk 4/4.
155s Building reference seed array...  [0.001s]
155s Building query seed array...  [0.002s]
155s Computing hash join...  [0s]
155s Masking low complexity seeds...  [0s]
155s Searching alignments...  [0s]
155s Deallocating memory...  [0s]
155s Processing query block 1, reference block 1/1, shape 8/16, index chunk 1/4.
155s Building reference seed array...  [0.001s]
155s Building query seed array...  [0.002s]
155s Computing hash join...  [0s]
155s Masking low complexity seeds...  [0s]
155s Searching alignments...  [0s]
155s Deallocating memory...  [0s]
155s Processing query block 1, reference block 1/1, shape 8/16, index chunk 2/4.
155s Building reference seed array...  [0.001s]
155s Building query seed array...  [0.002s]
155s Computing hash join...  [0s]
155s Masking low complexity seeds...  [0s]
155s Searching alignments...  [0s]
155s Deallocating memory...  [0s]
155s Processing query block 1, reference block 1/1, shape 8/16, index chunk 3/4.
155s Building reference seed array...  [0.001s]
155s Building query seed array...  [0.002s]
155s Computing hash join...  [0.001s]
155s Masking low complexity seeds...  [0s]
155s Searching alignments...  [0s]
155s Deallocating memory...  [0s]
155s Processing query block 1, reference block 1/1, shape 8/16, index chunk 4/4.
155s Building reference seed array...  [0.001s]
155s Building query seed array...  [0.002s]
155s Computing hash join...  [0s]
155s Masking low complexity seeds...  [0s]
155s Searching alignments...  [0s]
155s Deallocating memory...  [0s]
155s Processing query block 1, reference block 1/1, shape 9/16, index chunk 1/4.
155s Building reference seed array...  [0.001s]
155s Building query seed array...  [0.002s]
155s Computing hash join...  [0s]
155s Masking low complexity seeds...  [0s]
155s Searching alignments...  [0s]
155s Deallocating memory...  [0s]
155s Processing query block 1, reference block 1/1, shape 9/16, index chunk 2/4.
155s Building reference seed array...  [0.001s]
155s Building query seed array...  [0.002s]
155s Computing hash join...  [0s]
155s Masking low complexity seeds...  [0s]
155s Searching alignments...  [0s]
155s Deallocating memory...  [0s]
155s Processing query block 1, reference block 1/1, shape 9/16, index chunk 3/4.
155s Building reference seed array...  [0.001s]
155s Building query seed array...  [0.002s]
155s Computing hash join...  [0s]
155s Masking low complexity seeds...  [0s]
155s Searching alignments...  [0.001s]
155s Deallocating memory...  [0s]
155s Processing query block 1, reference block 1/1, shape 9/16, index chunk 4/4.
155s Building reference seed array...  [0.001s]
155s Building query seed array...  [0.002s]
155s Computing hash join...  [0s]
155s Masking low complexity seeds...  [0s]
155s Searching alignments...  [0s]
155s Deallocating memory...  [0s]
155s Processing query block 1, reference block 1/1, shape 10/16, index chunk 1/4.
155s Building reference seed array...  [0.001s]
155s Building query seed array...  [0.002s]
155s Computing hash join...  [0s]
155s Masking low complexity seeds...  [0s]
155s Searching alignments...  [0s]
155s Deallocating memory...  [0s]
155s Processing query block 1, reference block 1/1, shape 10/16, index chunk 2/4.
155s Building reference seed array...  [0.001s]
155s Building query seed array...  [0.002s]
155s Computing hash join...  [0s]
155s Masking low complexity seeds...  [0s]
155s Searching alignments...  [0s]
155s Deallocating memory...  [0s]
155s Processing query block 1, reference block 1/1, shape 10/16, index chunk 3/4.
155s Building reference seed array...  [0.001s]
155s Building query seed array...  [0.002s]
155s Computing hash join...  [0s]
155s Masking low complexity seeds...  [0s]
155s Searching alignments...  [0s]
155s Deallocating memory...  [0s]
155s Processing query block 1, reference block 1/1, shape 10/16, index chunk 4/4.
155s Building reference seed array...  [0.001s]
155s Building query seed array...  [0.002s]
155s Computing hash join...  [0s]
155s Masking low complexity seeds...  [0s]
155s Searching alignments...  [0s]
155s Deallocating memory...  [0s]
155s Processing query block 1, reference block 1/1, shape 11/16, index chunk 1/4.
155s Building reference seed array...  [0.001s]
155s Building query seed array...  [0.002s]
155s Computing hash join...  [0s]
155s Masking low complexity seeds...  [0s]
155s Searching alignments...  [0s]
155s Deallocating memory...  [0s]
155s Processing query block 1, reference block 1/1, shape 11/16, index chunk 2/4.
155s Building reference seed array...  [0.001s]
155s Building query seed array...  [0.002s]
155s Computing hash join...  [0s]
155s Masking low complexity seeds...  [0s]
155s Searching alignments...  [0.001s]
155s Deallocating memory...  [0s]
155s Processing query block 1, reference block 1/1, shape 11/16, index chunk 3/4.
155s Building reference seed array...  [0.001s]
155s Building query seed array...  [0.002s]
155s Computing hash join...  [0s]
155s Masking low complexity seeds...  [0s]
155s Searching alignments...  [0s]
155s Deallocating memory...  [0s]
155s Processing query block 1, reference block 1/1, shape 11/16, index chunk 4/4.
155s Building reference seed array...  [0.001s]
155s Building query seed array...  [0.002s]
155s Computing hash join...  [0s]
155s Masking low complexity seeds...  [0s]
155s Searching alignments...  [0s]
155s Deallocating memory...  [0s]
155s Processing query block 1, reference block 1/1, shape 12/16, index chunk 1/4.
155s Building reference seed array...  [0.001s]
155s Building query seed array...  [0.002s]
155s Computing hash join...  [0s]
155s Masking low complexity seeds...  [0s]
155s Searching alignments...  [0s]
155s Deallocating memory...  [0s]
155s Processing query block 1, reference block 1/1, shape 12/16, index chunk 2/4.
155s Building reference seed array...  [0.001s]
155s Building query seed array...  [0.002s]
155s Computing hash join...  [0s]
155s Masking low complexity seeds...  [0s]
155s Searching alignments...  [0s]
155s Deallocating memory...  [0s]
155s Processing query block 1, reference block 1/1, shape 12/16, index chunk 3/4.
155s Building reference seed array...  [0.001s]
155s Building query seed array...  [0.002s]
155s Computing hash join...  [0s]
155s Masking low complexity seeds...  [0s]
155s Searching alignments...  [0s]
155s Deallocating memory...  [0s]
155s Processing query block 1, reference block 1/1, shape 12/16, index chunk 4/4.
155s Building reference seed array...  [0.001s]
155s Building query seed array...  [0.002s]
155s Computing hash join...  [0s]
155s Masking low complexity seeds...  [0s]
155s Searching alignments...  [0s]
155s Deallocating memory...  [0s]
155s Processing query block 1, reference block 1/1, shape 13/16, index chunk 1/4.
155s Building reference seed array...  [0.001s]
155s Building query seed array...  [0.002s]
155s Computing hash join...  [0s]
155s Masking low complexity seeds...  [0s]
155s Searching alignments...  [0s]
155s Deallocating memory...  [0s]
155s Processing query block 1, reference block 1/1, shape 13/16, index chunk 2/4.
155s Building reference seed array...  [0.001s]
155s Building query seed array...  [0.002s]
155s Computing hash join...  [0s]
155s Masking low complexity seeds...  [0s]
155s Searching alignments...  [0s]
155s Deallocating memory...  [0s]
155s Processing query block 1, reference block 1/1, shape 13/16, index chunk 3/4.
155s Building reference seed array...  [0.001s]
155s Building query seed array...  [0.002s]
155s Computing hash join...  [0s]
155s Masking low complexity seeds...  [0s]
155s Searching alignments...  [0s]
155s Deallocating memory...  [0s]
155s Processing query block 1, reference block 1/1, shape 13/16, index chunk 4/4.
155s Building reference seed array...  [0.001s]
155s Building query seed array...  [0.002s]
155s Computing hash join...  [0s]
155s Masking low complexity seeds...  [0s]
155s Searching alignments...  [0s]
155s Deallocating memory...  [0s]
155s Processing query block 1, reference block 1/1, shape 14/16, index chunk 1/4.
155s Building reference seed array...  [0.001s]
155s Building query seed array...  [0.002s]
155s Computing hash join...  [0s]
155s Masking low complexity seeds...  [0s]
155s Searching alignments...  [0s]
155s Deallocating memory...  [0s]
155s Processing query block 1, reference block 1/1, shape 14/16, index chunk 2/4.
155s Building reference seed array...  [0.001s]
155s Building query seed array...  [0.002s]
155s Computing hash join...  [0s]
155s Masking low complexity seeds...  [0s]
155s Searching alignments...  [0s]
155s Deallocating memory...  [0s]
155s Processing query block 1, reference block 1/1, shape 14/16, index chunk 3/4.
155s Building reference seed array...  [0.001s]
155s Building query seed array...  [0.002s]
155s Computing hash join...  [0s]
155s Masking low complexity seeds...  [0s]
155s Searching alignments...  [0s]
155s Deallocating memory...  [0s]
155s Processing query block 1, reference block 1/1, shape 14/16, index chunk 4/4.
155s Building reference seed array...  [0.001s]
155s Building query seed array...  [0.002s]
155s Computing hash join...  [0s]
155s Masking low complexity seeds...  [0s]
155s Searching alignments...  [0s]
155s Deallocating memory...  [0s]
155s Processing query block 1, reference block 1/1, shape 15/16, index chunk 1/4.
155s Building reference seed array...  [0.001s]
155s Building query seed array...  [0.002s]
155s Computing hash join...  [0s]
155s Masking low complexity seeds...  [0s]
155s Searching alignments...  [0s]
155s Deallocating memory...  [0s]
155s Processing query block 1, reference block 1/1, shape 15/16, index chunk 2/4.
155s Building reference seed array...  [0.001s]
155s Building query seed array...  [0.002s]
155s Computing hash join...  [0s]
155s Masking low complexity seeds...  [0s]
155s Searching alignments...  [0s]
155s Deallocating memory...  [0s]
155s Processing query block 1, reference block 1/1, shape 15/16, index chunk 3/4.
155s Building reference seed array...  [0.001s]
155s Building query seed array...  [0.002s]
155s Computing hash join...  [0s]
155s Masking low complexity seeds...  [0s]
155s Searching alignments...  [0s]
155s Deallocating memory...  [0s]
155s Processing query block 1, reference block 1/1, shape 15/16, index chunk 4/4.
155s Building reference seed array...  [0.001s]
155s Building query seed array...  [0.002s]
155s Computing hash join...  [0s]
155s Masking low complexity seeds...  [0s]
155s Searching alignments...  [0s]
155s Deallocating memory...  [0s]
155s Processing query block 1, reference block 1/1, shape 16/16, index chunk 1/4.
155s Building reference seed array...  [0.001s]
155s Building query seed array...  [0.002s]
155s Computing hash join...  [0s]
155s Masking low complexity seeds...  [0s]
155s Searching alignments...  [0s]
155s Deallocating memory...  [0s]
155s Processing query block 1, reference block 1/1, shape 16/16, index chunk 2/4.
155s Building reference seed array...  [0.001s]
155s Building query seed array...  [0.002s]
155s Computing hash join...  [0s]
155s Masking low complexity seeds...  [0s]
155s Searching alignments...  [0s]
155s Deallocating memory...  [0s]
155s Processing query block 1, reference block 1/1, shape 16/16, index chunk 3/4.
155s Building reference seed array...  [0.001s]
155s Building query seed array...  [0.002s]
155s Computing hash join...  [0s]
155s Masking low complexity seeds...  [0s]
155s Searching alignments...  [0s]
155s Deallocating memory...  [0s]
155s Processing query block 1, reference block 1/1, shape 16/16, index chunk 4/4.
155s Building reference seed array...  [0.001s]
155s Building query seed array...  [0.002s]
155s Computing hash join...  [0s]
155s Masking low complexity seeds...  [0s]
155s Searching alignments...  [0s]
155s Deallocating memory...  [0s]
155s Deallocating buffers...  [0s]
155s Clearing query masking...  [0s]
155s Computing alignments... Loading trace points...  [0.001s]
155s Sorting trace points...  [0s]
157s Computing alignments...  [2.027s]
157s Deallocating buffers...  [0s]
157s Loading trace points...  [0s]
157s  [2.029s]
157s Deallocating reference...  [0s]
157s Loading reference sequences...  [0s]
157s Deallocating buffers...  [0s]
157s Deallocating queries...  [0s]
157s Loading query sequences...  [0s]
157s Closing the input file...  [0s]
157s Closing the output file...  [0s]
157s Closing the database...  [0s]
157s Cleaning up...  [0s]
157s Total time = 2.515s
157s Reported 1173 pairwise alignments, 1173 HSPs.
157s 72 queries aligned.
157s + diamond blastp --threads 1 --db test/E.faa.diamond --query test/M.faa --out /tmp/tmp.gdxNHDneSh/M.faa.vs.E.faa.diamond -e 1e-05 --outfmt 6 --sensitive
157s diamond v2.1.9.163 (C) Max Planck Society for the Advancement of Science, Benjamin Buchfink, University of Tuebingen
157s Documentation, support and updates available at http://www.diamondsearch.org
157s Please cite: http://dx.doi.org/10.1038/s41592-021-01101-x Nature Methods (2021)
157s 
157s #CPU threads: 1
157s Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1)
157s Temporary directory: /tmp/tmp.gdxNHDneSh
157s #Target sequences to report alignments for: 25
157s Opening the database...  [0s]
157s Database: test/E.faa.diamond (type: Diamond database, sequences: 72, letters: 54509)
157s Block size = 2000000000
157s Opening the input file...  [0s]
157s Opening the output file...  [0s]
157s Loading query sequences...  [0s]
157s Masking queries...  [0.008s]
157s Algorithm: Double-indexed
157s Building query histograms...  [0.006s]
157s Seeking in database...  [0s]
157s Loading reference sequences...  [0s]
157s Masking reference...  [0.012s]
157s Initializing temporary storage...  [0s]
157s Building reference histograms...  [0.013s]
157s Allocating buffers...  [0s]
157s Processing query block 1, reference block 1/1, shape 1/16, index chunk 1/4.
157s Building reference seed array...  [0.002s]
157s Building query seed array...  [0.001s]
157s Computing hash join...  [0s]
157s Masking low complexity seeds...  [0s]
157s Searching alignments...  [0.001s]
157s Deallocating memory...  [0s]
157s Processing query block 1, reference block 1/1, shape 1/16, index chunk 2/4.
157s Building reference seed array...  [0.003s]
157s Building query seed array...  [0.002s]
157s Computing hash join...  [0s]
157s Masking low complexity seeds...  [0s]
157s Searching alignments...  [0.001s]
157s Deallocating memory...  [0s]
157s Processing query block 1, reference block 1/1, shape 1/16, index chunk 3/4.
157s Building reference seed array...  [0.002s]
157s Building query seed array...  [0.001s]
157s Computing hash join...  [0s]
157s Masking low complexity seeds...  [0s]
157s Searching alignments...  [0.001s]
157s Deallocating memory...  [0s]
157s Processing query block 1, reference block 1/1, shape 1/16, index chunk 4/4.
157s Building reference seed array...  [0.002s]
157s Building query seed array...  [0.001s]
157s Computing hash join...  [0s]
157s Masking low complexity seeds...  [0s]
157s Searching alignments...  [0.001s]
157s Deallocating memory...  [0s]
157s Processing query block 1, reference block 1/1, shape 2/16, index chunk 1/4.
157s Building reference seed array...  [0.002s]
157s Building query seed array...  [0.001s]
157s Computing hash join...  [0s]
157s Masking low complexity seeds...  [0s]
157s Searching alignments...  [0s]
157s Deallocating memory...  [0s]
157s Processing query block 1, reference block 1/1, shape 2/16, index chunk 2/4.
157s Building reference seed array...  [0.002s]
157s Building query seed array...  [0.001s]
157s Computing hash join...  [0s]
157s Masking low complexity seeds...  [0s]
157s Searching alignments...  [0s]
157s Deallocating memory...  [0s]
157s Processing query block 1, reference block 1/1, shape 2/16, index chunk 3/4.
157s Building reference seed array...  [0.002s]
157s Building query seed array...  [0.001s]
157s Computing hash join...  [0s]
157s Masking low complexity seeds...  [0s]
157s Searching alignments...  [0s]
157s Deallocating memory...  [0s]
157s Processing query block 1, reference block 1/1, shape 2/16, index chunk 4/4.
157s Building reference seed array...  [0.002s]
157s Building query seed array...  [0.001s]
157s Computing hash join...  [0s]
157s Masking low complexity seeds...  [0s]
157s Searching alignments...  [0s]
157s Deallocating memory...  [0s]
157s Processing query block 1, reference block 1/1, shape 3/16, index chunk 1/4.
157s Building reference seed array...  [0.002s]
157s Building query seed array...  [0.001s]
157s Computing hash join...  [0s]
157s Masking low complexity seeds...  [0s]
157s Searching alignments...  [0s]
157s Deallocating memory...  [0s]
157s Processing query block 1, reference block 1/1, shape 3/16, index chunk 2/4.
157s Building reference seed array...  [0.002s]
157s Building query seed array...  [0.001s]
157s Computing hash join...  [0s]
157s Masking low complexity seeds...  [0s]
157s Searching alignments...  [0s]
157s Deallocating memory...  [0s]
157s Processing query block 1, reference block 1/1, shape 3/16, index chunk 3/4.
157s Building reference seed array...  [0.002s]
157s Building query seed array...  [0.001s]
157s Computing hash join...  [0s]
157s Masking low complexity seeds...  [0s]
157s Searching alignments...  [0s]
157s Deallocating memory...  [0s]
157s Processing query block 1, reference block 1/1, shape 3/16, index chunk 4/4.
157s Building reference seed array...  [0.002s]
157s Building query seed array...  [0.001s]
157s Computing hash join...  [0s]
157s Masking low complexity seeds...  [0s]
157s Searching alignments...  [0s]
157s Deallocating memory...  [0s]
157s Processing query block 1, reference block 1/1, shape 4/16, index chunk 1/4.
157s Building reference seed array...  [0.002s]
157s Building query seed array...  [0.001s]
157s Computing hash join...  [0s]
157s Masking low complexity seeds...  [0s]
157s Searching alignments...  [0s]
157s Deallocating memory...  [0s]
157s Processing query block 1, reference block 1/1, shape 4/16, index chunk 2/4.
157s Building reference seed array...  [0.002s]
157s Building query seed array...  [0.001s]
157s Computing hash join...  [0s]
157s Masking low complexity seeds...  [0s]
157s Searching alignments...  [0s]
157s Deallocating memory...  [0s]
157s Processing query block 1, reference block 1/1, shape 4/16, index chunk 3/4.
157s Building reference seed array...  [0.002s]
157s Building query seed array...  [0.001s]
157s Computing hash join...  [0s]
157s Masking low complexity seeds...  [0s]
157s Searching alignments...  [0s]
157s Deallocating memory...  [0s]
157s Processing query block 1, reference block 1/1, shape 4/16, index chunk 4/4.
157s Building reference seed array...  [0.002s]
157s Building query seed array...  [0.001s]
157s Computing hash join...  [0s]
157s Masking low complexity seeds...  [0s]
157s Searching alignments...  [0s]
157s Deallocating memory...  [0s]
157s Processing query block 1, reference block 1/1, shape 5/16, index chunk 1/4.
157s Building reference seed array...  [0.002s]
157s Building query seed array...  [0.001s]
157s Computing hash join...  [0s]
157s Masking low complexity seeds...  [0s]
157s Searching alignments...  [0s]
157s Deallocating memory...  [0s]
157s Processing query block 1, reference block 1/1, shape 5/16, index chunk 2/4.
157s Building reference seed array...  [0.002s]
157s Building query seed array...  [0.001s]
157s Computing hash join...  [0s]
157s Masking low complexity seeds...  [0s]
157s Searching alignments...  [0s]
157s Deallocating memory...  [0s]
157s Processing query block 1, reference block 1/1, shape 5/16, index chunk 3/4.
157s Building reference seed array...  [0.003s]
157s Building query seed array...  [0.001s]
157s Computing hash join...  [0s]
157s Masking low complexity seeds...  [0s]
157s Searching alignments...  [0s]
157s Deallocating memory...  [0s]
157s Processing query block 1, reference block 1/1, shape 5/16, index chunk 4/4.
157s Building reference seed array...  [0.002s]
157s Building query seed array...  [0.001s]
157s Computing hash join...  [0s]
157s Masking low complexity seeds...  [0s]
157s Searching alignments...  [0s]
157s Deallocating memory...  [0s]
157s Processing query block 1, reference block 1/1, shape 6/16, index chunk 1/4.
157s Building reference seed array...  [0.002s]
157s Building query seed array...  [0.001s]
157s Computing hash join...  [0s]
157s Masking low complexity seeds...  [0s]
157s Searching alignments...  [0s]
157s Deallocating memory...  [0s]
157s Processing query block 1, reference block 1/1, shape 6/16, index chunk 2/4.
157s Building reference seed array...  [0.002s]
157s Building query seed array...  [0.001s]
157s Computing hash join...  [0s]
157s Masking low complexity seeds...  [0s]
157s Searching alignments...  [0s]
157s Deallocating memory...  [0s]
157s Processing query block 1, reference block 1/1, shape 6/16, index chunk 3/4.
157s Building reference seed array...  [0.002s]
157s Building query seed array...  [0.001s]
157s Computing hash join...  [0s]
157s Masking low complexity seeds...  [0s]
157s Searching alignments...  [0s]
157s Deallocating memory...  [0s]
157s Processing query block 1, reference block 1/1, shape 6/16, index chunk 4/4.
157s Building reference seed array...  [0.002s]
157s Building query seed array...  [0.001s]
157s Computing hash join...  [0s]
157s Masking low complexity seeds...  [0s]
157s Searching alignments...  [0s]
157s Deallocating memory...  [0s]
157s Processing query block 1, reference block 1/1, shape 7/16, index chunk 1/4.
157s Building reference seed array...  [0.002s]
157s Building query seed array...  [0.001s]
157s Computing hash join...  [0s]
157s Masking low complexity seeds...  [0s]
157s Searching alignments...  [0s]
157s Deallocating memory...  [0s]
157s Processing query block 1, reference block 1/1, shape 7/16, index chunk 2/4.
157s Building reference seed array...  [0.002s]
157s Building query seed array...  [0.001s]
157s Computing hash join...  [0s]
157s Masking low complexity seeds...  [0s]
157s Searching alignments...  [0.001s]
157s Deallocating memory...  [0s]
157s Processing query block 1, reference block 1/1, shape 7/16, index chunk 3/4.
157s Building reference seed array...  [0.002s]
157s Building query seed array...  [0.001s]
157s Computing hash join...  [0s]
157s Masking low complexity seeds...  [0s]
157s Searching alignments...  [0s]
157s Deallocating memory...  [0s]
157s Processing query block 1, reference block 1/1, shape 7/16, index chunk 4/4.
157s Building reference seed array...  [0.002s]
157s Building query seed array...  [0.001s]
157s Computing hash join...  [0s]
157s Masking low complexity seeds...  [0s]
157s Searching alignments...  [0s]
157s Deallocating memory...  [0s]
157s Processing query block 1, reference block 1/1, shape 8/16, index chunk 1/4.
157s Building reference seed array...  [0.002s]
157s Building query seed array...  [0.001s]
157s Computing hash join...  [0s]
157s Masking low complexity seeds...  [0s]
157s Searching alignments...  [0s]
157s Deallocating memory...  [0s]
157s Processing query block 1, reference block 1/1, shape 8/16, index chunk 2/4.
157s Building reference seed array...  [0.002s]
157s Building query seed array...  [0.001s]
157s Computing hash join...  [0s]
157s Masking low complexity seeds...  [0s]
157s Searching alignments...  [0s]
157s Deallocating memory...  [0s]
157s Processing query block 1, reference block 1/1, shape 8/16, index chunk 3/4.
157s Building reference seed array...  [0.002s]
157s Building query seed array...  [0.001s]
157s Computing hash join...  [0s]
157s Masking low complexity seeds...  [0s]
157s Searching alignments...  [0s]
157s Deallocating memory...  [0s]
157s Processing query block 1, reference block 1/1, shape 8/16, index chunk 4/4.
157s Building reference seed array...  [0.002s]
157s Building query seed array...  [0.001s]
157s Computing hash join...  [0s]
157s Masking low complexity seeds...  [0s]
157s Searching alignments...  [0s]
157s Deallocating memory...  [0s]
157s Processing query block 1, reference block 1/1, shape 9/16, index chunk 1/4.
157s Building reference seed array...  [0.002s]
157s Building query seed array...  [0.001s]
157s Computing hash join...  [0s]
157s Masking low complexity seeds...  [0s]
157s Searching alignments...  [0s]
157s Deallocating memory...  [0s]
157s Processing query block 1, reference block 1/1, shape 9/16, index chunk 2/4.
157s Building reference seed array...  [0.002s]
157s Building query seed array...  [0.001s]
157s Computing hash join...  [0s]
157s Masking low complexity seeds...  [0s]
157s Searching alignments...  [0s]
157s Deallocating memory...  [0s]
157s Processing query block 1, reference block 1/1, shape 9/16, index chunk 3/4.
157s Building reference seed array...  [0.003s]
157s Building query seed array...  [0.001s]
157s Computing hash join...  [0s]
157s Masking low complexity seeds...  [0s]
157s Searching alignments...  [0s]
157s Deallocating memory...  [0s]
157s Processing query block 1, reference block 1/1, shape 9/16, index chunk 4/4.
157s Building reference seed array...  [0.002s]
157s Building query seed array...  [0.001s]
157s Computing hash join...  [0s]
157s Masking low complexity seeds...  [0s]
157s Searching alignments...  [0s]
157s Deallocating memory...  [0s]
157s Processing query block 1, reference block 1/1, shape 10/16, index chunk 1/4.
157s Building reference seed array...  [0.002s]
157s Building query seed array...  [0.001s]
157s Computing hash join...  [0s]
157s Masking low complexity seeds...  [0s]
157s Searching alignments...  [0s]
157s Deallocating memory...  [0s]
157s Processing query block 1, reference block 1/1, shape 10/16, index chunk 2/4.
157s Building reference seed array...  [0.002s]
157s Building query seed array...  [0.001s]
157s Computing hash join...  [0s]
157s Masking low complexity seeds...  [0s]
157s Searching alignments...  [0s]
157s Deallocating memory...  [0s]
157s Processing query block 1, reference block 1/1, shape 10/16, index chunk 3/4.
157s Building reference seed array...  [0.002s]
157s Building query seed array...  [0.001s]
157s Computing hash join...  [0s]
157s Masking low complexity seeds...  [0s]
157s Searching alignments...  [0s]
157s Deallocating memory...  [0s]
157s Processing query block 1, reference block 1/1, shape 10/16, index chunk 4/4.
157s Building reference seed array...  [0.002s]
157s Building query seed array...  [0.001s]
157s Computing hash join...  [0s]
157s Masking low complexity seeds...  [0s]
157s Searching alignments...  [0s]
157s Deallocating memory...  [0s]
157s Processing query block 1, reference block 1/1, shape 11/16, index chunk 1/4.
157s Building reference seed array...  [0.002s]
157s Building query seed array...  [0.001s]
157s Computing hash join...  [0s]
157s Masking low complexity seeds...  [0s]
157s Searching alignments...  [0s]
157s Deallocating memory...  [0s]
157s Processing query block 1, reference block 1/1, shape 11/16, index chunk 2/4.
157s Building reference seed array...  [0.002s]
157s Building query seed array...  [0.001s]
157s Computing hash join...  [0s]
157s Masking low complexity seeds...  [0s]
157s Searching alignments...  [0s]
157s Deallocating memory...  [0s]
157s Processing query block 1, reference block 1/1, shape 11/16, index chunk 3/4.
157s Building reference seed array...  [0.002s]
157s Building query seed array...  [0.001s]
157s Computing hash join...  [0s]
157s Masking low complexity seeds...  [0s]
157s Searching alignments...  [0s]
157s Deallocating memory...  [0s]
157s Processing query block 1, reference block 1/1, shape 11/16, index chunk 4/4.
157s Building reference seed array...  [0.002s]
157s Building query seed array...  [0.001s]
157s Computing hash join...  [0s]
157s Masking low complexity seeds...  [0s]
157s Searching alignments...  [0s]
157s Deallocating memory...  [0s]
157s Processing query block 1, reference block 1/1, shape 12/16, index chunk 1/4.
157s Building reference seed array...  [0.002s]
157s Building query seed array...  [0.001s]
157s Computing hash join...  [0s]
157s Masking low complexity seeds...  [0s]
157s Searching alignments...  [0s]
157s Deallocating memory...  [0s]
157s Processing query block 1, reference block 1/1, shape 12/16, index chunk 2/4.
157s Building reference seed array...  [0.002s]
157s Building query seed array...  [0.001s]
157s Computing hash join...  [0s]
157s Masking low complexity seeds...  [0s]
157s Searching alignments...  [0s]
157s Deallocating memory...  [0s]
157s Processing query block 1, reference block 1/1, shape 12/16, index chunk 3/4.
157s Building reference seed array...  [0.002s]
157s Building query seed array...  [0.001s]
157s Computing hash join...  [0s]
157s Masking low complexity seeds...  [0s]
157s Searching alignments...  [0s]
157s Deallocating memory...  [0s]
157s Processing query block 1, reference block 1/1, shape 12/16, index chunk 4/4.
157s Building reference seed array...  [0.002s]
157s Building query seed array...  [0.001s]
157s Computing hash join...  [0s]
157s Masking low complexity seeds...  [0s]
157s Searching alignments...  [0s]
157s Deallocating memory...  [0s]
157s Processing query block 1, reference block 1/1, shape 13/16, index chunk 1/4.
157s Building reference seed array...  [0.002s]
157s Building query seed array...  [0.001s]
157s Computing hash join...  [0s]
157s Masking low complexity seeds...  [0s]
157s Searching alignments...  [0s]
157s Deallocating memory...  [0s]
157s Processing query block 1, reference block 1/1, shape 13/16, index chunk 2/4.
157s Building reference seed array...  [0.002s]
157s Building query seed array...  [0.001s]
157s Computing hash join...  [0s]
157s Masking low complexity seeds...  [0s]
157s Searching alignments...  [0s]
157s Deallocating memory...  [0s]
158s Processing query block 1, reference block 1/1, shape 13/16, index chunk 3/4.
158s Building reference seed array...  [0.002s]
158s Building query seed array...  [0.001s]
158s Computing hash join...  [0s]
158s Masking low complexity seeds...  [0s]
158s Searching alignments...  [0s]
158s Deallocating memory...  [0s]
158s Processing query block 1, reference block 1/1, shape 13/16, index chunk 4/4.
158s Building reference seed array...  [0.002s]
158s Building query seed array...  [0.001s]
158s Computing hash join...  [0s]
158s Masking low complexity seeds...  [0s]
158s Searching alignments...  [0s]
158s Deallocating memory...  [0s]
158s Processing query block 1, reference block 1/1, shape 14/16, index chunk 1/4.
158s Building reference seed array...  [0.002s]
158s Building query seed array...  [0.001s]
158s Computing hash join...  [0s]
158s Masking low complexity seeds...  [0s]
158s Searching alignments...  [0s]
158s Deallocating memory...  [0s]
158s Processing query block 1, reference block 1/1, shape 14/16, index chunk 2/4.
158s Building reference seed array...  [0.002s]
158s Building query seed array...  [0.001s]
158s Computing hash join...  [0s]
158s Masking low complexity seeds...  [0s]
158s Searching alignments...  [0s]
158s Deallocating memory...  [0s]
158s Processing query block 1, reference block 1/1, shape 14/16, index chunk 3/4.
158s Building reference seed array...  [0.002s]
158s Building query seed array...  [0.001s]
158s Computing hash join...  [0s]
158s Masking low complexity seeds...  [0s]
158s Searching alignments...  [0s]
158s Deallocating memory...  [0s]
158s Processing query block 1, reference block 1/1, shape 14/16, index chunk 4/4.
158s Building reference seed array...  [0.002s]
158s Building query seed array...  [0.001s]
158s Computing hash join...  [0s]
158s Masking low complexity seeds...  [0s]
158s Searching alignments...  [0s]
158s Deallocating memory...  [0s]
158s Processing query block 1, reference block 1/1, shape 15/16, index chunk 1/4.
158s Building reference seed array...  [0.002s]
158s Building query seed array...  [0.001s]
158s Computing hash join...  [0s]
158s Masking low complexity seeds...  [0s]
158s Searching alignments...  [0s]
158s Deallocating memory...  [0s]
158s Processing query block 1, reference block 1/1, shape 15/16, index chunk 2/4.
158s Building reference seed array...  [0.003s]
158s Building query seed array...  [0.001s]
158s Computing hash join...  [0s]
158s Masking low complexity seeds...  [0s]
158s Searching alignments...  [0s]
158s Deallocating memory...  [0s]
158s Processing query block 1, reference block 1/1, shape 15/16, index chunk 3/4.
158s Building reference seed array...  [0.002s]
158s Building query seed array...  [0.001s]
158s Computing hash join...  [0s]
158s Masking low complexity seeds...  [0s]
158s Searching alignments...  [0s]
158s Deallocating memory...  [0s]
158s Processing query block 1, reference block 1/1, shape 15/16, index chunk 4/4.
158s Building reference seed array...  [0.002s]
158s Building query seed array...  [0.001s]
158s Computing hash join...  [0s]
158s Masking low complexity seeds...  [0s]
158s Searching alignments...  [0s]
158s Deallocating memory...  [0s]
158s Processing query block 1, reference block 1/1, shape 16/16, index chunk 1/4.
158s Building reference seed array...  [0.002s]
158s Building query seed array...  [0.001s]
158s Computing hash join...  [0s]
158s Masking low complexity seeds...  [0s]
158s Searching alignments...  [0s]
158s Deallocating memory...  [0s]
158s Processing query block 1, reference block 1/1, shape 16/16, index chunk 2/4.
158s Building reference seed array...  [0.002s]
158s Building query seed array...  [0.001s]
158s Computing hash join...  [0s]
158s Masking low complexity seeds...  [0s]
158s Searching alignments...  [0s]
158s Deallocating memory...  [0s]
158s Processing query block 1, reference block 1/1, shape 16/16, index chunk 3/4.
158s Building reference seed array...  [0.002s]
158s Building query seed array...  [0.001s]
158s Computing hash join...  [0s]
158s Masking low complexity seeds...  [0s]
158s Searching alignments...  [0s]
158s Deallocating memory...  [0s]
158s Processing query block 1, reference block 1/1, shape 16/16, index chunk 4/4.
158s Building reference seed array...  [0.002s]
158s Building query seed array...  [0.001s]
158s Computing hash join...  [0s]
158s Masking low complexity seeds...  [0s]
158s Searching alignments...  [0s]
158s Deallocating memory...  [0s]
158s Deallocating buffers...  [0s]
158s Clearing query masking...  [0s]
158s Computing alignments... Loading trace points...  [0.001s]
158s Sorting trace points...  [0s]
159s Computing alignments...  [-84.31s]
159s Deallocating buffers...  [0s]
159s Loading trace points...  [0s]
159s  [-84.307s]
159s Deallocating reference...  [0s]
159s Loading reference sequences...  [0s]
159s Deallocating buffers...  [0s]
159s Deallocating queries...  [0s]
159s Loading query sequences...  [0s]
159s Closing the input file...  [0s]
159s Closing the output file...  [0s]
159s Closing the database...  [0s]
159s Cleaning up...  [0s]
159s Total time = -83.818s
159s Reported 489 pairwise alignments, 489 HSPs.
159s 32 queries aligned.
159s + diamond blastp --threads 1 --db test/M.faa.diamond --query test/E.faa --out /tmp/tmp.gdxNHDneSh/E.faa.vs.M.faa.diamond -e 1e-05 --outfmt 6 --sensitive
159s diamond v2.1.9.163 (C) Max Planck Society for the Advancement of Science, Benjamin Buchfink, University of Tuebingen
159s Documentation, support and updates available at http://www.diamondsearch.org
159s Please cite: http://dx.doi.org/10.1038/s41592-021-01101-x Nature Methods (2021)
159s 
159s #CPU threads: 1
159s Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1)
159s Temporary directory: /tmp/tmp.gdxNHDneSh
159s #Target sequences to report alignments for: 25
159s Opening the database...  [0s]
159s Database: test/M.faa.diamond (type: Diamond database, sequences: 40, letters: 26963)
159s Block size = 2000000000
159s Opening the input file...  [0s]
159s Opening the output file...  [0s]
159s Loading query sequences...  [0s]
159s Masking queries...  [0.012s]
159s Algorithm: Double-indexed
159s Building query histograms...  [0.013s]
159s Seeking in database...  [0s]
159s Loading reference sequences...  [0s]
159s Masking reference...  [0.006s]
159s Initializing temporary storage...  [0s]
159s Building reference histograms...  [0.006s]
159s Allocating buffers...  [0s]
159s Processing query block 1, reference block 1/1, shape 1/16, index chunk 1/4.
159s Building reference seed array...  [0.001s]
159s Building query seed array...  [0.002s]
159s Computing hash join...  [0s]
159s Masking low complexity seeds...  [0s]
159s Searching alignments...  [0.001s]
159s Deallocating memory...  [0s]
159s Processing query block 1, reference block 1/1, shape 1/16, index chunk 2/4.
159s Building reference seed array...  [0.001s]
159s Building query seed array...  [0.003s]
159s Computing hash join...  [0s]
159s Masking low complexity seeds...  [0s]
159s Searching alignments...  [0.002s]
159s Deallocating memory...  [0s]
159s Processing query block 1, reference block 1/1, shape 1/16, index chunk 3/4.
159s Building reference seed array...  [0.001s]
159s Building query seed array...  [0.003s]
159s Computing hash join...  [0s]
159s Masking low complexity seeds...  [0s]
159s Searching alignments...  [0s]
159s Deallocating memory...  [0s]
159s Processing query block 1, reference block 1/1, shape 1/16, index chunk 4/4.
159s Building reference seed array...  [0.002s]
159s Building query seed array...  [0.004s]
159s Computing hash join...  [0s]
159s Masking low complexity seeds...  [0s]
159s Searching alignments...  [0.001s]
159s Deallocating memory...  [0s]
159s Processing query block 1, reference block 1/1, shape 2/16, index chunk 1/4.
159s Building reference seed array...  [0.001s]
159s Building query seed array...  [0.003s]
159s Computing hash join...  [0.002s]
159s Masking low complexity seeds...  [0s]
159s Searching alignments...  [0s]
159s Deallocating memory...  [0s]
159s Processing query block 1, reference block 1/1, shape 2/16, index chunk 2/4.
159s Building reference seed array...  [0.002s]
159s Building query seed array...  [0.002s]
159s Computing hash join...  [0s]
159s Masking low complexity seeds...  [0s]
159s Searching alignments...  [0s]
159s Deallocating memory...  [0s]
159s Processing query block 1, reference block 1/1, shape 2/16, index chunk 3/4.
159s Building reference seed array...  [0.002s]
159s Building query seed array...  [0.006s]
159s Computing hash join...  [0s]
159s Masking low complexity seeds...  [0s]
159s Searching alignments...  [0s]
159s Deallocating memory...  [0s]
159s Processing query block 1, reference block 1/1, shape 2/16, index chunk 4/4.
159s Building reference seed array...  [0.001s]
159s Building query seed array...  [0.004s]
159s Computing hash join...  [0s]
159s Masking low complexity seeds...  [0s]
159s Searching alignments...  [0s]
159s Deallocating memory...  [0s]
159s Processing query block 1, reference block 1/1, shape 3/16, index chunk 1/4.
159s Building reference seed array...  [0.001s]
159s Building query seed array...  [0.003s]
159s Computing hash join...  [0.001s]
159s Masking low complexity seeds...  [0.001s]
159s Searching alignments...  [0.001s]
159s Deallocating memory...  [0s]
159s Processing query block 1, reference block 1/1, shape 3/16, index chunk 2/4.
159s Building reference seed array...  [0.003s]
159s Building query seed array...  [0.007s]
159s Computing hash join...  [0.003s]
159s Masking low complexity seeds...  [0.001s]
159s Searching alignments...  [0.002s]
159s Deallocating memory...  [0s]
159s Processing query block 1, reference block 1/1, shape 3/16, index chunk 3/4.
159s Building reference seed array...  [0.005s]
159s Building query seed array...  [0.004s]
159s Computing hash join...  [0s]
159s Masking low complexity seeds...  [0s]
159s Searching alignments...  [0s]
159s Deallocating memory...  [0s]
159s Processing query block 1, reference block 1/1, shape 3/16, index chunk 4/4.
159s Building reference seed array...  [0.001s]
159s Building query seed array...  [0.003s]
159s Computing hash join...  [0s]
159s Masking low complexity seeds...  [0s]
159s Searching alignments...  [0.001s]
159s Deallocating memory...  [0s]
159s Processing query block 1, reference block 1/1, shape 4/16, index chunk 1/4.
159s Building reference seed array...  [0.002s]
159s Building query seed array...  [0.002s]
159s Computing hash join...  [0s]
159s Masking low complexity seeds...  [0s]
159s Searching alignments...  [0s]
159s Deallocating memory...  [0s]
159s Processing query block 1, reference block 1/1, shape 4/16, index chunk 2/4.
159s Building reference seed array...  [0.001s]
159s Building query seed array...  [0.003s]
159s Computing hash join...  [0s]
159s Masking low complexity seeds...  [0s]
159s Searching alignments...  [0s]
159s Deallocating memory...  [0s]
159s Processing query block 1, reference block 1/1, shape 4/16, index chunk 3/4.
159s Building reference seed array...  [0.001s]
159s Building query seed array...  [0.004s]
159s Computing hash join...  [0s]
159s Masking low complexity seeds...  [0s]
159s Searching alignments...  [0s]
159s Deallocating memory...  [0s]
159s Processing query block 1, reference block 1/1, shape 4/16, index chunk 4/4.
159s Building reference seed array...  [0.001s]
159s Building query seed array...  [0.002s]
159s Computing hash join...  [0s]
159s Masking low complexity seeds...  [0s]
159s Searching alignments...  [0s]
159s Deallocating memory...  [0s]
159s Processing query block 1, reference block 1/1, shape 5/16, index chunk 1/4.
159s Building reference seed array...  [0.001s]
159s Building query seed array...  [0.002s]
159s Computing hash join...  [0s]
159s Masking low complexity seeds...  [0s]
159s Searching alignments...  [0.001s]
159s Deallocating memory...  [0s]
159s Processing query block 1, reference block 1/1, shape 5/16, index chunk 2/4.
159s Building reference seed array...  [0.001s]
159s Building query seed array...  [0.003s]
159s Computing hash join...  [0s]
159s Masking low complexity seeds...  [0s]
159s Searching alignments...  [0.001s]
159s Deallocating memory...  [0s]
159s Processing query block 1, reference block 1/1, shape 5/16, index chunk 3/4.
159s Building reference seed array...  [0.001s]
159s Building query seed array...  [0.003s]
159s Computing hash join...  [0s]
159s Masking low complexity seeds...  [0s]
159s Searching alignments...  [0s]
159s Deallocating memory...  [0s]
159s Processing query block 1, reference block 1/1, shape 5/16, index chunk 4/4.
159s Building reference seed array...  [0.001s]
159s Building query seed array...  [0.002s]
159s Computing hash join...  [0s]
159s Masking low complexity seeds...  [0s]
159s Searching alignments...  [0s]
159s Deallocating memory...  [0s]
159s Processing query block 1, reference block 1/1, shape 6/16, index chunk 1/4.
159s Building reference seed array...  [0.001s]
159s Building query seed array...  [0.002s]
159s Computing hash join...  [0s]
159s Masking low complexity seeds...  [0s]
159s Searching alignments...  [0s]
159s Deallocating memory...  [0s]
159s Processing query block 1, reference block 1/1, shape 6/16, index chunk 2/4.
159s Building reference seed array...  [0.001s]
159s Building query seed array...  [0.002s]
159s Computing hash join...  [0s]
159s Masking low complexity seeds...  [0s]
159s Searching alignments...  [0s]
159s Deallocating memory...  [0s]
159s Processing query block 1, reference block 1/1, shape 6/16, index chunk 3/4.
159s Building reference seed array...  [0.001s]
159s Building query seed array...  [0.003s]
159s Computing hash join...  [0s]
159s Masking low complexity seeds...  [0s]
159s Searching alignments...  [0s]
159s Deallocating memory...  [0s]
159s Processing query block 1, reference block 1/1, shape 6/16, index chunk 4/4.
159s Building reference seed array...  [0.001s]
159s Building query seed array...  [0.002s]
159s Computing hash join...  [0s]
159s Masking low complexity seeds...  [0s]
159s Searching alignments...  [0s]
159s Deallocating memory...  [0s]
159s Processing query block 1, reference block 1/1, shape 7/16, index chunk 1/4.
159s Building reference seed array...  [0.001s]
159s Building query seed array...  [0.002s]
159s Computing hash join...  [0s]
159s Masking low complexity seeds...  [0s]
159s Searching alignments...  [0s]
159s Deallocating memory...  [0s]
159s Processing query block 1, reference block 1/1, shape 7/16, index chunk 2/4.
159s Building reference seed array...  [0.001s]
159s Building query seed array...  [0.003s]
159s Computing hash join...  [0s]
159s Masking low complexity seeds...  [0s]
159s Searching alignments...  [0s]
159s Deallocating memory...  [0s]
159s Processing query block 1, reference block 1/1, shape 7/16, index chunk 3/4.
159s Building reference seed array...  [0.001s]
159s Building query seed array...  [0.003s]
159s Computing hash join...  [0s]
159s Masking low complexity seeds...  [0s]
159s Searching alignments...  [0s]
159s Deallocating memory...  [0s]
159s Processing query block 1, reference block 1/1, shape 7/16, index chunk 4/4.
159s Building reference seed array...  [0.001s]
159s Building query seed array...  [0.002s]
159s Computing hash join...  [0s]
159s Masking low complexity seeds...  [0s]
159s Searching alignments...  [0s]
159s Deallocating memory...  [0s]
159s Processing query block 1, reference block 1/1, shape 8/16, index chunk 1/4.
159s Building reference seed array...  [0.001s]
159s Building query seed array...  [0.002s]
159s Computing hash join...  [0s]
159s Masking low complexity seeds...  [0s]
159s Searching alignments...  [0s]
159s Deallocating memory...  [0s]
159s Processing query block 1, reference block 1/1, shape 8/16, index chunk 2/4.
159s Building reference seed array...  [0.001s]
159s Building query seed array...  [0.002s]
159s Computing hash join...  [0s]
159s Masking low complexity seeds...  [0s]
159s Searching alignments...  [0s]
159s Deallocating memory...  [0s]
159s Processing query block 1, reference block 1/1, shape 8/16, index chunk 3/4.
159s Building reference seed array...  [0.001s]
159s Building query seed array...  [0.002s]
159s Computing hash join...  [0s]
159s Masking low complexity seeds...  [0s]
159s Searching alignments...  [0s]
159s Deallocating memory...  [0s]
159s Processing query block 1, reference block 1/1, shape 8/16, index chunk 4/4.
159s Building reference seed array...  [0.001s]
159s Building query seed array...  [0.002s]
159s Computing hash join...  [0s]
159s Masking low complexity seeds...  [0s]
159s Searching alignments...  [0s]
159s Deallocating memory...  [0s]
159s Processing query block 1, reference block 1/1, shape 9/16, index chunk 1/4.
159s Building reference seed array...  [0.001s]
159s Building query seed array...  [0.002s]
159s Computing hash join...  [0s]
159s Masking low complexity seeds...  [0s]
159s Searching alignments...  [0s]
159s Deallocating memory...  [0s]
159s Processing query block 1, reference block 1/1, shape 9/16, index chunk 2/4.
159s Building reference seed array...  [0.001s]
159s Building query seed array...  [0.003s]
159s Computing hash join...  [0s]
159s Masking low complexity seeds...  [0s]
159s Searching alignments...  [0s]
159s Deallocating memory...  [0s]
159s Processing query block 1, reference block 1/1, shape 9/16, index chunk 3/4.
159s Building reference seed array...  [0.001s]
159s Building query seed array...  [0.002s]
159s Computing hash join...  [0s]
159s Masking low complexity seeds...  [0s]
159s Searching alignments...  [0s]
159s Deallocating memory...  [0s]
159s Processing query block 1, reference block 1/1, shape 9/16, index chunk 4/4.
159s Building reference seed array...  [0.001s]
159s Building query seed array...  [0.002s]
159s Computing hash join...  [0s]
159s Masking low complexity seeds...  [0s]
159s Searching alignments...  [0s]
159s Deallocating memory...  [0s]
159s Processing query block 1, reference block 1/1, shape 10/16, index chunk 1/4.
159s Building reference seed array...  [0.001s]
159s Building query seed array...  [0.002s]
159s Computing hash join...  [0s]
159s Masking low complexity seeds...  [0s]
159s Searching alignments...  [0s]
159s Deallocating memory...  [0s]
159s Processing query block 1, reference block 1/1, shape 10/16, index chunk 2/4.
159s Building reference seed array...  [0.001s]
159s Building query seed array...  [0.003s]
159s Computing hash join...  [0s]
159s Masking low complexity seeds...  [0s]
159s Searching alignments...  [0s]
159s Deallocating memory...  [0s]
159s Processing query block 1, reference block 1/1, shape 10/16, index chunk 3/4.
159s Building reference seed array...  [0.001s]
159s Building query seed array...  [0.002s]
159s Computing hash join...  [0s]
159s Masking low complexity seeds...  [0s]
159s Searching alignments...  [0s]
159s Deallocating memory...  [0s]
159s Processing query block 1, reference block 1/1, shape 10/16, index chunk 4/4.
159s Building reference seed array...  [0.001s]
159s Building query seed array...  [0.002s]
159s Computing hash join...  [0s]
159s Masking low complexity seeds...  [0s]
159s Searching alignments...  [0s]
159s Deallocating memory...  [0s]
159s Processing query block 1, reference block 1/1, shape 11/16, index chunk 1/4.
159s Building reference seed array...  [0.001s]
159s Building query seed array...  [0.002s]
159s Computing hash join...  [0s]
159s Masking low complexity seeds...  [0s]
159s Searching alignments...  [0s]
159s Deallocating memory...  [0s]
159s Processing query block 1, reference block 1/1, shape 11/16, index chunk 2/4.
159s Building reference seed array...  [0.001s]
159s Building query seed array...  [0.002s]
159s Computing hash join...  [0s]
159s Masking low complexity seeds...  [0s]
159s Searching alignments...  [0s]
159s Deallocating memory...  [0s]
159s Processing query block 1, reference block 1/1, shape 11/16, index chunk 3/4.
159s Building reference seed array...  [0.001s]
159s Building query seed array...  [0.002s]
159s Computing hash join...  [0s]
159s Masking low complexity seeds...  [0s]
159s Searching alignments...  [0s]
159s Deallocating memory...  [0s]
159s Processing query block 1, reference block 1/1, shape 11/16, index chunk 4/4.
159s Building reference seed array...  [0.001s]
159s Building query seed array...  [0.002s]
159s Computing hash join...  [0s]
159s Masking low complexity seeds...  [0s]
159s Searching alignments...  [0s]
159s Deallocating memory...  [0s]
159s Processing query block 1, reference block 1/1, shape 12/16, index chunk 1/4.
159s Building reference seed array...  [0.001s]
159s Building query seed array...  [0.002s]
159s Computing hash join...  [0s]
159s Masking low complexity seeds...  [0s]
159s Searching alignments...  [0s]
159s Deallocating memory...  [0s]
159s Processing query block 1, reference block 1/1, shape 12/16, index chunk 2/4.
159s Building reference seed array...  [0.001s]
159s Building query seed array...  [0.002s]
159s Computing hash join...  [0s]
159s Masking low complexity seeds...  [0s]
159s Searching alignments...  [0s]
159s Deallocating memory...  [0s]
159s Processing query block 1, reference block 1/1, shape 12/16, index chunk 3/4.
159s Building reference seed array...  [0.001s]
159s Building query seed array...  [0.003s]
159s Computing hash join...  [0s]
159s Masking low complexity seeds...  [0s]
159s Searching alignments...  [0s]
159s Deallocating memory...  [0s]
159s Processing query block 1, reference block 1/1, shape 12/16, index chunk 4/4.
159s Building reference seed array...  [0.001s]
159s Building query seed array...  [0.002s]
159s Computing hash join...  [0s]
159s Masking low complexity seeds...  [0s]
159s Searching alignments...  [0s]
159s Deallocating memory...  [0s]
159s Processing query block 1, reference block 1/1, shape 13/16, index chunk 1/4.
159s Building reference seed array...  [0.001s]
159s Building query seed array...  [0.002s]
159s Computing hash join...  [0s]
159s Masking low complexity seeds...  [0s]
159s Searching alignments...  [0s]
159s Deallocating memory...  [0s]
159s Processing query block 1, reference block 1/1, shape 13/16, index chunk 2/4.
159s Building reference seed array...  [0.001s]
159s Building query seed array...  [0.002s]
159s Computing hash join...  [0s]
159s Masking low complexity seeds...  [0s]
159s Searching alignments...  [0s]
159s Deallocating memory...  [0s]
159s Processing query block 1, reference block 1/1, shape 13/16, index chunk 3/4.
159s Building reference seed array...  [0.001s]
159s Building query seed array...  [0.002s]
159s Computing hash join...  [0s]
159s Masking low complexity seeds...  [0s]
159s Searching alignments...  [0s]
159s Deallocating memory...  [0s]
159s Processing query block 1, reference block 1/1, shape 13/16, index chunk 4/4.
159s Building reference seed array...  [0.001s]
159s Building query seed array...  [0.002s]
159s Computing hash join...  [0s]
159s Masking low complexity seeds...  [0s]
159s Searching alignments...  [0s]
159s Deallocating memory...  [0s]
159s Processing query block 1, reference block 1/1, shape 14/16, index chunk 1/4.
159s Building reference seed array...  [0.001s]
159s Building query seed array...  [0.002s]
159s Computing hash join...  [0s]
159s Masking low complexity seeds...  [0s]
159s Searching alignments...  [0s]
159s Deallocating memory...  [0s]
159s Processing query block 1, reference block 1/1, shape 14/16, index chunk 2/4.
159s Building reference seed array...  [0.001s]
159s Building query seed array...  [0.002s]
159s Computing hash join...  [0s]
159s Masking low complexity seeds...  [0s]
159s Searching alignments...  [0s]
159s Deallocating memory...  [0s]
159s Processing query block 1, reference block 1/1, shape 14/16, index chunk 3/4.
159s Building reference seed array...  [0.001s]
159s Building query seed array...  [0.002s]
159s Computing hash join...  [0s]
159s Masking low complexity seeds...  [0s]
159s Searching alignments...  [0s]
159s Deallocating memory...  [0s]
159s Processing query block 1, reference block 1/1, shape 14/16, index chunk 4/4.
159s Building reference seed array...  [0.001s]
159s Building query seed array...  [0.002s]
159s Computing hash join...  [0s]
159s Masking low complexity seeds...  [0s]
159s Searching alignments...  [0s]
159s Deallocating memory...  [0s]
159s Processing query block 1, reference block 1/1, shape 15/16, index chunk 1/4.
159s Building reference seed array...  [0.001s]
159s Building query seed array...  [0.002s]
159s Computing hash join...  [0s]
159s Masking low complexity seeds...  [0s]
159s Searching alignments...  [0s]
159s Deallocating memory...  [0s]
159s Processing query block 1, reference block 1/1, shape 15/16, index chunk 2/4.
159s Building reference seed array...  [0.001s]
159s Building query seed array...  [0.002s]
159s Computing hash join...  [0s]
159s Masking low complexity seeds...  [0s]
159s Searching alignments...  [0s]
159s Deallocating memory...  [0s]
159s Processing query block 1, reference block 1/1, shape 15/16, index chunk 3/4.
159s Building reference seed array...  [0.001s]
159s Building query seed array...  [0.002s]
159s Computing hash join...  [0s]
159s Masking low complexity seeds...  [0s]
159s Searching alignments...  [0s]
159s Deallocating memory...  [0s]
159s Processing query block 1, reference block 1/1, shape 15/16, index chunk 4/4.
159s Building reference seed array...  [0.001s]
159s Building query seed array...  [0.002s]
159s Computing hash join...  [0s]
159s Masking low complexity seeds...  [0s]
159s Searching alignments...  [0s]
159s Deallocating memory...  [0s]
159s Processing query block 1, reference block 1/1, shape 16/16, index chunk 1/4.
159s Building reference seed array...  [0.001s]
159s Building query seed array...  [0.002s]
159s Computing hash join...  [0s]
159s Masking low complexity seeds...  [0s]
159s Searching alignments...  [0s]
159s Deallocating memory...  [0s]
159s Processing query block 1, reference block 1/1, shape 16/16, index chunk 2/4.
159s Building reference seed array...  [0.001s]
159s Building query seed array...  [0.002s]
159s Computing hash join...  [0s]
159s Masking low complexity seeds...  [0s]
160s Searching alignments...  [0s]
160s Deallocating memory...  [0s]
160s Processing query block 1, reference block 1/1, shape 16/16, index chunk 3/4.
160s Building reference seed array...  [0.001s]
160s Building query seed array...  [0.003s]
160s Computing hash join...  [0s]
160s Masking low complexity seeds...  [0s]
160s Searching alignments...  [0s]
160s Deallocating memory...  [0s]
160s Processing query block 1, reference block 1/1, shape 16/16, index chunk 4/4.
160s Building reference seed array...  [0.001s]
160s Building query seed array...  [0.002s]
160s Computing hash join...  [0s]
160s Masking low complexity seeds...  [0s]
160s Searching alignments...  [0s]
160s Deallocating memory...  [0s]
160s Deallocating buffers...  [0s]
160s Clearing query masking...  [0s]
160s Computing alignments... Loading trace points...  [0.001s]
160s Sorting trace points...  [0s]
162s Computing alignments...  [2.175s]
162s Deallocating buffers...  [0s]
162s Loading trace points...  [0s]
162s  [2.177s]
162s Deallocating reference...  [0s]
162s Loading reference sequences...  [0s]
162s Deallocating buffers...  [0s]
162s Deallocating queries...  [0s]
162s Loading query sequences...  [0s]
162s Closing the input file...  [0s]
162s Closing the output file...  [0s]
162s Closing the database...  [0s]
162s Cleaning up...  [0s]
162s Total time = 2.719s
162s Reported 1173 pairwise alignments, 1173 HSPs.
162s 72 queries aligned.
162s + diamond blastp --ignore-warnings --threads 1 --db test/E.faa.diamond --query test/C2.faa --out /tmp/tmp.gdxNHDneSh/C2.faa.vs.E.faa.diamond -e 1e-05 --outfmt 6 --sensitive
162s diamond v2.1.9.163 (C) Max Planck Society for the Advancement of Science, Benjamin Buchfink, University of Tuebingen
162s Documentation, support and updates available at http://www.diamondsearch.org
162s Please cite: http://dx.doi.org/10.1038/s41592-021-01101-x Nature Methods (2021)
162s 
162s #CPU threads: 1
162s Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1)
162s Temporary directory: /tmp/tmp.gdxNHDneSh
162s #Target sequences to report alignments for: 25
162s Opening the database...  [0s]
162s Database: test/E.faa.diamond (type: Diamond database, sequences: 72, letters: 54509)
162s Block size = 2000000000
162s Opening the input file...  [0s]
162s Opening the output file...  [0s]
162s Loading query sequences...  [0s]
162s Masking queries...  [0s]
162s Algorithm: Double-indexed
162s Building query histograms...  [0s]
162s Seeking in database...  [0s]
162s Loading reference sequences...  [0s]
162s Masking reference...  [0.011s]
162s Initializing temporary storage...  [0s]
162s Building reference histograms...  [0.013s]
162s Allocating buffers...  [0s]
162s Processing query block 1, reference block 1/1, shape 1/16, index chunk 1/4.
162s Building reference seed array...  [0.002s]
162s Building query seed array...  [0s]
162s Computing hash join...  [0s]
162s Masking low complexity seeds...  [0s]
162s Searching alignments...  [0s]
162s Deallocating memory...  [0s]
162s Processing query block 1, reference block 1/1, shape 1/16, index chunk 2/4.
162s Building reference seed array...  [0.002s]
162s Building query seed array...  [0s]
162s Computing hash join...  [0s]
162s Masking low complexity seeds...  [0s]
162s Searching alignments...  [0s]
162s Deallocating memory...  [0s]
162s Processing query block 1, reference block 1/1, shape 1/16, index chunk 3/4.
162s Building reference seed array...  [0.002s]
162s Building query seed array...  [0s]
162s Computing hash join...  [0s]
162s Masking low complexity seeds...  [0s]
162s Searching alignments...  [0s]
162s Deallocating memory...  [0s]
162s Processing query block 1, reference block 1/1, shape 1/16, index chunk 4/4.
162s Building reference seed array...  [0.002s]
162s Building query seed array...  [0s]
162s Computing hash join...  [0s]
162s Masking low complexity seeds...  [0s]
162s Searching alignments...  [0s]
162s Deallocating memory...  [0s]
162s Processing query block 1, reference block 1/1, shape 2/16, index chunk 1/4.
162s Building reference seed array...  [0.002s]
162s Building query seed array...  [0s]
162s Computing hash join...  [0s]
162s Masking low complexity seeds...  [0s]
162s Searching alignments...  [0s]
162s Deallocating memory...  [0s]
162s Processing query block 1, reference block 1/1, shape 2/16, index chunk 2/4.
162s Building reference seed array...  [0.002s]
162s Building query seed array...  [0s]
162s Computing hash join...  [0s]
162s Masking low complexity seeds...  [0s]
162s Searching alignments...  [0s]
162s Deallocating memory...  [0s]
162s Processing query block 1, reference block 1/1, shape 2/16, index chunk 3/4.
162s Building reference seed array...  [0.002s]
162s Building query seed array...  [0s]
162s Computing hash join...  [0s]
162s Masking low complexity seeds...  [0s]
162s Searching alignments...  [0s]
162s Deallocating memory...  [0s]
162s Processing query block 1, reference block 1/1, shape 2/16, index chunk 4/4.
162s Building reference seed array...  [0.002s]
162s Building query seed array...  [0s]
162s Computing hash join...  [0s]
162s Masking low complexity seeds...  [0s]
162s Searching alignments...  [0s]
162s Deallocating memory...  [0s]
162s Processing query block 1, reference block 1/1, shape 3/16, index chunk 1/4.
162s Building reference seed array...  [0.002s]
162s Building query seed array...  [0s]
162s Computing hash join...  [0s]
162s Masking low complexity seeds...  [0s]
162s Searching alignments...  [0s]
162s Deallocating memory...  [0s]
162s Processing query block 1, reference block 1/1, shape 3/16, index chunk 2/4.
162s Building reference seed array...  [0.002s]
162s Building query seed array...  [0s]
162s Computing hash join...  [0s]
162s Masking low complexity seeds...  [0s]
162s Searching alignments...  [0s]
162s Deallocating memory...  [0s]
162s Processing query block 1, reference block 1/1, shape 3/16, index chunk 3/4.
162s Building reference seed array...  [0.003s]
162s Building query seed array...  [0s]
162s Computing hash join...  [0s]
162s Masking low complexity seeds...  [0s]
162s Searching alignments...  [0s]
162s Deallocating memory...  [0s]
162s Processing query block 1, reference block 1/1, shape 3/16, index chunk 4/4.
162s Building reference seed array...  [0.002s]
162s Building query seed array...  [0s]
162s Computing hash join...  [0s]
162s Masking low complexity seeds...  [0s]
162s Searching alignments...  [0s]
162s Deallocating memory...  [0s]
162s Processing query block 1, reference block 1/1, shape 4/16, index chunk 1/4.
162s Building reference seed array...  [0.002s]
162s Building query seed array...  [0s]
162s Computing hash join...  [0s]
162s Masking low complexity seeds...  [0s]
162s Searching alignments...  [0s]
162s Deallocating memory...  [0s]
162s Processing query block 1, reference block 1/1, shape 4/16, index chunk 2/4.
162s Building reference seed array...  [0.002s]
162s Building query seed array...  [0s]
162s Computing hash join...  [0s]
162s Masking low complexity seeds...  [0s]
162s Searching alignments...  [0s]
162s Deallocating memory...  [0s]
162s Processing query block 1, reference block 1/1, shape 4/16, index chunk 3/4.
162s Building reference seed array...  [0.002s]
162s Building query seed array...  [0s]
162s Computing hash join...  [0s]
162s Masking low complexity seeds...  [0s]
162s Searching alignments...  [0s]
162s Deallocating memory...  [0s]
162s Processing query block 1, reference block 1/1, shape 4/16, index chunk 4/4.
162s Building reference seed array...  [0.002s]
162s Building query seed array...  [0s]
162s Computing hash join...  [0s]
162s Masking low complexity seeds...  [0s]
162s Searching alignments...  [0s]
162s Deallocating memory...  [0s]
162s Processing query block 1, reference block 1/1, shape 5/16, index chunk 1/4.
162s Building reference seed array...  [0.002s]
162s Building query seed array...  [0s]
162s Computing hash join...  [0s]
162s Masking low complexity seeds...  [0s]
162s Searching alignments...  [0s]
162s Deallocating memory...  [0s]
162s Processing query block 1, reference block 1/1, shape 5/16, index chunk 2/4.
162s Building reference seed array...  [0.003s]
162s Building query seed array...  [0s]
162s Computing hash join...  [0s]
162s Masking low complexity seeds...  [0s]
162s Searching alignments...  [0s]
162s Deallocating memory...  [0s]
162s Processing query block 1, reference block 1/1, shape 5/16, index chunk 3/4.
162s Building reference seed array...  [0.002s]
162s Building query seed array...  [0s]
162s Computing hash join...  [0s]
162s Masking low complexity seeds...  [0s]
162s Searching alignments...  [0s]
162s Deallocating memory...  [0s]
162s Processing query block 1, reference block 1/1, shape 5/16, index chunk 4/4.
162s Building reference seed array...  [0.002s]
162s Building query seed array...  [0s]
162s Computing hash join...  [0s]
162s Masking low complexity seeds...  [0s]
162s Searching alignments...  [0s]
162s Deallocating memory...  [0s]
162s Processing query block 1, reference block 1/1, shape 6/16, index chunk 1/4.
162s Building reference seed array...  [0.002s]
162s Building query seed array...  [0s]
162s Computing hash join...  [0s]
162s Masking low complexity seeds...  [0s]
162s Searching alignments...  [0s]
162s Deallocating memory...  [0s]
162s Processing query block 1, reference block 1/1, shape 6/16, index chunk 2/4.
162s Building reference seed array...  [0.002s]
162s Building query seed array...  [0s]
162s Computing hash join...  [0s]
162s Masking low complexity seeds...  [0s]
162s Searching alignments...  [0s]
162s Deallocating memory...  [0s]
162s Processing query block 1, reference block 1/1, shape 6/16, index chunk 3/4.
162s Building reference seed array...  [0.003s]
162s Building query seed array...  [0s]
162s Computing hash join...  [0s]
162s Masking low complexity seeds...  [0s]
162s Searching alignments...  [0s]
162s Deallocating memory...  [0s]
162s Processing query block 1, reference block 1/1, shape 6/16, index chunk 4/4.
162s Building reference seed array...  [0.002s]
162s Building query seed array...  [0s]
162s Computing hash join...  [0s]
162s Masking low complexity seeds...  [0s]
162s Searching alignments...  [0s]
162s Deallocating memory...  [0s]
162s Processing query block 1, reference block 1/1, shape 7/16, index chunk 1/4.
162s Building reference seed array...  [0.002s]
162s Building query seed array...  [0s]
162s Computing hash join...  [0s]
162s Masking low complexity seeds...  [0s]
162s Searching alignments...  [0s]
162s Deallocating memory...  [0s]
162s Processing query block 1, reference block 1/1, shape 7/16, index chunk 2/4.
162s Building reference seed array...  [0.002s]
162s Building query seed array...  [0s]
162s Computing hash join...  [0s]
162s Masking low complexity seeds...  [0s]
162s Searching alignments...  [0s]
162s Deallocating memory...  [0s]
162s Processing query block 1, reference block 1/1, shape 7/16, index chunk 3/4.
162s Building reference seed array...  [0.003s]
162s Building query seed array...  [0s]
162s Computing hash join...  [0s]
162s Masking low complexity seeds...  [0s]
162s Searching alignments...  [0s]
162s Deallocating memory...  [0s]
162s Processing query block 1, reference block 1/1, shape 7/16, index chunk 4/4.
162s Building reference seed array...  [0.002s]
162s Building query seed array...  [0s]
162s Computing hash join...  [0s]
162s Masking low complexity seeds...  [0s]
162s Searching alignments...  [0s]
162s Deallocating memory...  [0s]
162s Processing query block 1, reference block 1/1, shape 8/16, index chunk 1/4.
162s Building reference seed array...  [0.002s]
162s Building query seed array...  [0s]
162s Computing hash join...  [0s]
162s Masking low complexity seeds...  [0s]
162s Searching alignments...  [0s]
162s Deallocating memory...  [0s]
162s Processing query block 1, reference block 1/1, shape 8/16, index chunk 2/4.
162s Building reference seed array...  [0.002s]
162s Building query seed array...  [0s]
162s Computing hash join...  [0s]
162s Masking low complexity seeds...  [0s]
162s Searching alignments...  [0s]
162s Deallocating memory...  [0s]
162s Processing query block 1, reference block 1/1, shape 8/16, index chunk 3/4.
162s Building reference seed array...  [0.002s]
162s Building query seed array...  [0s]
162s Computing hash join...  [0s]
162s Masking low complexity seeds...  [0s]
162s Searching alignments...  [0s]
162s Deallocating memory...  [0s]
162s Processing query block 1, reference block 1/1, shape 8/16, index chunk 4/4.
162s Building reference seed array...  [0.002s]
162s Building query seed array...  [0s]
162s Computing hash join...  [0s]
162s Masking low complexity seeds...  [0s]
162s Searching alignments...  [0s]
162s Deallocating memory...  [0s]
162s Processing query block 1, reference block 1/1, shape 9/16, index chunk 1/4.
162s Building reference seed array...  [0.002s]
162s Building query seed array...  [0s]
162s Computing hash join...  [0s]
162s Masking low complexity seeds...  [0s]
162s Searching alignments...  [0s]
162s Deallocating memory...  [0s]
162s Processing query block 1, reference block 1/1, shape 9/16, index chunk 2/4.
162s Building reference seed array...  [0.002s]
162s Building query seed array...  [0s]
162s Computing hash join...  [0s]
162s Masking low complexity seeds...  [0s]
162s Searching alignments...  [0s]
162s Deallocating memory...  [0s]
162s Processing query block 1, reference block 1/1, shape 9/16, index chunk 3/4.
162s Building reference seed array...  [0.003s]
162s Building query seed array...  [0s]
162s Computing hash join...  [0s]
162s Masking low complexity seeds...  [0s]
162s Searching alignments...  [0s]
162s Deallocating memory...  [0s]
162s Processing query block 1, reference block 1/1, shape 9/16, index chunk 4/4.
162s Building reference seed array...  [0.002s]
162s Building query seed array...  [0s]
162s Computing hash join...  [0s]
162s Masking low complexity seeds...  [0s]
162s Searching alignments...  [0s]
162s Deallocating memory...  [0s]
162s Processing query block 1, reference block 1/1, shape 10/16, index chunk 1/4.
162s Building reference seed array...  [0.002s]
162s Building query seed array...  [0s]
162s Computing hash join...  [0s]
162s Masking low complexity seeds...  [0s]
162s Searching alignments...  [0s]
162s Deallocating memory...  [0s]
162s Processing query block 1, reference block 1/1, shape 10/16, index chunk 2/4.
162s Building reference seed array...  [0.002s]
162s Building query seed array...  [0s]
162s Computing hash join...  [0s]
162s Masking low complexity seeds...  [0s]
162s Searching alignments...  [0s]
162s Deallocating memory...  [0s]
162s Processing query block 1, reference block 1/1, shape 10/16, index chunk 3/4.
162s Building reference seed array...  [0.003s]
162s Building query seed array...  [0s]
162s Computing hash join...  [0s]
162s Masking low complexity seeds...  [0s]
162s Searching alignments...  [0s]
162s Deallocating memory...  [0s]
162s Processing query block 1, reference block 1/1, shape 10/16, index chunk 4/4.
162s Building reference seed array...  [0.002s]
162s Building query seed array...  [0s]
162s Computing hash join...  [0s]
162s Masking low complexity seeds...  [0s]
162s Searching alignments...  [0s]
162s Deallocating memory...  [0s]
162s Processing query block 1, reference block 1/1, shape 11/16, index chunk 1/4.
162s Building reference seed array...  [0.002s]
162s Building query seed array...  [0s]
162s Computing hash join...  [0s]
162s Masking low complexity seeds...  [0s]
162s Searching alignments...  [0s]
162s Deallocating memory...  [0s]
162s Processing query block 1, reference block 1/1, shape 11/16, index chunk 2/4.
162s Building reference seed array...  [0.002s]
162s Building query seed array...  [0s]
162s Computing hash join...  [0s]
162s Masking low complexity seeds...  [0s]
162s Searching alignments...  [0s]
162s Deallocating memory...  [0s]
162s Processing query block 1, reference block 1/1, shape 11/16, index chunk 3/4.
162s Building reference seed array...  [0.002s]
162s Building query seed array...  [0s]
162s Computing hash join...  [0s]
162s Masking low complexity seeds...  [0s]
162s Searching alignments...  [0s]
162s Deallocating memory...  [0s]
162s Processing query block 1, reference block 1/1, shape 11/16, index chunk 4/4.
162s Building reference seed array...  [0.002s]
162s Building query seed array...  [0s]
162s Computing hash join...  [0s]
162s Masking low complexity seeds...  [0s]
162s Searching alignments...  [0s]
162s Deallocating memory...  [0s]
162s Processing query block 1, reference block 1/1, shape 12/16, index chunk 1/4.
162s Building reference seed array...  [0.002s]
162s Building query seed array...  [0s]
162s Computing hash join...  [0s]
162s Masking low complexity seeds...  [0s]
162s Searching alignments...  [0s]
162s Deallocating memory...  [0s]
162s Processing query block 1, reference block 1/1, shape 12/16, index chunk 2/4.
162s Building reference seed array...  [0.002s]
162s Building query seed array...  [0s]
162s Computing hash join...  [0s]
162s Masking low complexity seeds...  [0s]
162s Searching alignments...  [0s]
162s Deallocating memory...  [0s]
162s Processing query block 1, reference block 1/1, shape 12/16, index chunk 3/4.
162s Building reference seed array...  [0.002s]
162s Building query seed array...  [0s]
162s Computing hash join...  [0s]
162s Masking low complexity seeds...  [0s]
162s Searching alignments...  [0s]
162s Deallocating memory...  [0s]
162s Processing query block 1, reference block 1/1, shape 12/16, index chunk 4/4.
162s Building reference seed array...  [0.002s]
162s Building query seed array...  [0s]
162s Computing hash join...  [0s]
162s Masking low complexity seeds...  [0s]
162s Searching alignments...  [0s]
162s Deallocating memory...  [0s]
162s Processing query block 1, reference block 1/1, shape 13/16, index chunk 1/4.
162s Building reference seed array...  [0.002s]
162s Building query seed array...  [0s]
162s Computing hash join...  [0s]
162s Masking low complexity seeds...  [0s]
162s Searching alignments...  [0s]
162s Deallocating memory...  [0s]
162s Processing query block 1, reference block 1/1, shape 13/16, index chunk 2/4.
162s Building reference seed array...  [0.002s]
162s Building query seed array...  [0s]
162s Computing hash join...  [0s]
162s Masking low complexity seeds...  [0s]
162s Searching alignments...  [0s]
162s Deallocating memory...  [0s]
162s Processing query block 1, reference block 1/1, shape 13/16, index chunk 3/4.
162s Building reference seed array...  [0.002s]
162s Building query seed array...  [0s]
162s Computing hash join...  [0s]
162s Masking low complexity seeds...  [0s]
162s Searching alignments...  [0s]
162s Deallocating memory...  [0s]
162s Processing query block 1, reference block 1/1, shape 13/16, index chunk 4/4.
162s Building reference seed array...  [0.002s]
162s Building query seed array...  [0s]
162s Computing hash join...  [0s]
162s Masking low complexity seeds...  [0s]
162s Searching alignments...  [0s]
162s Deallocating memory...  [0s]
162s Processing query block 1, reference block 1/1, shape 14/16, index chunk 1/4.
162s Building reference seed array...  [0.002s]
162s Building query seed array...  [0s]
162s Computing hash join...  [0s]
162s Masking low complexity seeds...  [0s]
162s Searching alignments...  [0s]
162s Deallocating memory...  [0s]
162s Processing query block 1, reference block 1/1, shape 14/16, index chunk 2/4.
162s Building reference seed array...  [0.002s]
162s Building query seed array...  [0s]
162s Computing hash join...  [0s]
162s Masking low complexity seeds...  [0s]
162s Searching alignments...  [0s]
162s Deallocating memory...  [0s]
162s Processing query block 1, reference block 1/1, shape 14/16, index chunk 3/4.
162s Building reference seed array...  [0.002s]
162s Building query seed array...  [0s]
162s Computing hash join...  [0s]
162s Masking low complexity seeds...  [0s]
162s Searching alignments...  [0s]
162s Deallocating memory...  [0s]
162s Processing query block 1, reference block 1/1, shape 14/16, index chunk 4/4.
162s Building reference seed array...  [0.002s]
162s Building query seed array...  [0s]
162s Computing hash join...  [0s]
162s Masking low complexity seeds...  [0s]
162s Searching alignments...  [0s]
162s Deallocating memory...  [0s]
162s Processing query block 1, reference block 1/1, shape 15/16, index chunk 1/4.
162s Building reference seed array...  [0.002s]
162s Building query seed array...  [0s]
162s Computing hash join...  [0s]
162s Masking low complexity seeds...  [0s]
162s Searching alignments...  [0s]
162s Deallocating memory...  [0s]
162s Processing query block 1, reference block 1/1, shape 15/16, index chunk 2/4.
162s Building reference seed array...  [0.002s]
162s Building query seed array...  [0s]
162s Computing hash join...  [0s]
162s Masking low complexity seeds...  [0s]
162s Searching alignments...  [0s]
162s Deallocating memory...  [0s]
162s Processing query block 1, reference block 1/1, shape 15/16, index chunk 3/4.
162s Building reference seed array...  [0.002s]
162s Building query seed array...  [0s]
162s Computing hash join...  [0s]
162s Masking low complexity seeds...  [0s]
162s Searching alignments...  [0s]
162s Deallocating memory...  [0s]
162s Processing query block 1, reference block 1/1, shape 15/16, index chunk 4/4.
162s Building reference seed array...  [0.002s]
162s Building query seed array...  [0s]
162s Computing hash join...  [0s]
162s Masking low complexity seeds...  [0s]
162s Searching alignments...  [0s]
162s Deallocating memory...  [0s]
162s Processing query block 1, reference block 1/1, shape 16/16, index chunk 1/4.
162s Building reference seed array...  [0.002s]
162s Building query seed array...  [0s]
162s Computing hash join...  [0s]
162s Masking low complexity seeds...  [0s]
162s Searching alignments...  [0s]
162s Deallocating memory...  [0s]
162s Processing query block 1, reference block 1/1, shape 16/16, index chunk 2/4.
162s Building reference seed array...  [0.002s]
162s Building query seed array...  [0s]
162s Computing hash join...  [0s]
162s Masking low complexity seeds...  [0s]
162s Searching alignments...  [0s]
162s Deallocating memory...  [0s]
162s Processing query block 1, reference block 1/1, shape 16/16, index chunk 3/4.
162s Building reference seed array...  [0.002s]
162s Building query seed array...  [0s]
162s Computing hash join...  [0s]
162s Masking low complexity seeds...  [0s]
162s Searching alignments...  [0s]
162s Deallocating memory...  [0s]
162s Processing query block 1, reference block 1/1, shape 16/16, index chunk 4/4.
162s Building reference seed array...  [0.002s]
162s Building query seed array...  [0s]
162s Computing hash join...  [0s]
162s Masking low complexity seeds...  [0s]
162s Searching alignments...  [0s]
162s Deallocating memory...  [0s]
162s Deallocating buffers...  [0s]
162s Clearing query masking...  [0s]
162s Computing alignments... Loading trace points...  [0s]
162s Sorting trace points...  [0s]
162s Computing alignments...  [0.001s]
162s Deallocating buffers...  [0s]
162s Loading trace points...  [0s]
162s  [0.002s]
162s Deallocating reference...  [0s]
162s Loading reference sequences...  [0s]
162s Deallocating buffers...  [0s]
162s Deallocating queries...  [0s]
162s Loading query sequences...  [0s]
162s Closing the input file...  [0s]
162s Closing the output file...  [0s]
162s Closing the database...  [0s]
162s Cleaning up...  [0s]
162s Total time = 0.336s
162s Reported 1 pairwise alignments, 1 HSPs.
162s 1 queries aligned.
162s + diamond blastp --threads 1 --db test/C2.faa.diamond --query test/E.faa --out /tmp/tmp.gdxNHDneSh/E.faa.vs.C2.faa.diamond -e 1e-05 --outfmt 6 --sensitive
162s diamond v2.1.9.163 (C) Max Planck Society for the Advancement of Science, Benjamin Buchfink, University of Tuebingen
162s Documentation, support and updates available at http://www.diamondsearch.org
162s Please cite: http://dx.doi.org/10.1038/s41592-021-01101-x Nature Methods (2021)
162s 
162s #CPU threads: 1
162s Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1)
162s Temporary directory: /tmp/tmp.gdxNHDneSh
162s #Target sequences to report alignments for: 25
162s Opening the database...  [0s]
162s Database: test/C2.faa.diamond (type: Diamond database, sequences: 2, letters: 726)
162s Block size = 2000000000
162s Opening the input file...  [0s]
162s Opening the output file...  [0s]
162s Loading query sequences...  [0s]
162s Masking queries...  [0.012s]
162s Algorithm: Double-indexed
162s Building query histograms...  [0.013s]
162s Seeking in database...  [0s]
162s Loading reference sequences...  [0s]
162s Masking reference...  [0s]
162s Initializing temporary storage...  [0s]
162s Building reference histograms...  [0s]
162s Allocating buffers...  [0s]
162s Processing query block 1, reference block 1/1, shape 1/16, index chunk 1/4.
162s Building reference seed array...  [0s]
162s Building query seed array...  [0.002s]
162s Computing hash join...  [0s]
162s Masking low complexity seeds...  [0s]
162s Searching alignments...  [0s]
162s Deallocating memory...  [0s]
162s Processing query block 1, reference block 1/1, shape 1/16, index chunk 2/4.
162s Building reference seed array...  [0s]
162s Building query seed array...  [0.002s]
162s Computing hash join...  [0s]
162s Masking low complexity seeds...  [0s]
162s Searching alignments...  [0s]
162s Deallocating memory...  [0s]
162s Processing query block 1, reference block 1/1, shape 1/16, index chunk 3/4.
162s Building reference seed array...  [0s]
162s Building query seed array...  [0.002s]
162s Computing hash join...  [0s]
162s Masking low complexity seeds...  [0s]
162s Searching alignments...  [0s]
162s Deallocating memory...  [0s]
162s Processing query block 1, reference block 1/1, shape 1/16, index chunk 4/4.
162s Building reference seed array...  [0s]
162s Building query seed array...  [0.002s]
162s Computing hash join...  [0s]
162s Masking low complexity seeds...  [0s]
162s Searching alignments...  [0s]
162s Deallocating memory...  [0s]
162s Processing query block 1, reference block 1/1, shape 2/16, index chunk 1/4.
162s Building reference seed array...  [0s]
162s Building query seed array...  [0.002s]
162s Computing hash join...  [0s]
162s Masking low complexity seeds...  [0s]
162s Searching alignments...  [0s]
162s Deallocating memory...  [0s]
162s Processing query block 1, reference block 1/1, shape 2/16, index chunk 2/4.
162s Building reference seed array...  [0s]
162s Building query seed array...  [0.002s]
162s Computing hash join...  [0s]
162s Masking low complexity seeds...  [0s]
162s Searching alignments...  [0s]
162s Deallocating memory...  [0s]
162s Processing query block 1, reference block 1/1, shape 2/16, index chunk 3/4.
162s Building reference seed array...  [0s]
162s Building query seed array...  [0.002s]
162s Computing hash join...  [0s]
162s Masking low complexity seeds...  [0s]
162s Searching alignments...  [0s]
162s Deallocating memory...  [0s]
162s Processing query block 1, reference block 1/1, shape 2/16, index chunk 4/4.
162s Building reference seed array...  [0s]
162s Building query seed array...  [0.002s]
162s Computing hash join...  [0s]
162s Masking low complexity seeds...  [0s]
162s Searching alignments...  [0s]
162s Deallocating memory...  [0s]
162s Processing query block 1, reference block 1/1, shape 3/16, index chunk 1/4.
162s Building reference seed array...  [0s]
162s Building query seed array...  [0.002s]
162s Computing hash join...  [0s]
162s Masking low complexity seeds...  [0s]
162s Searching alignments...  [0s]
162s Deallocating memory...  [0s]
162s Processing query block 1, reference block 1/1, shape 3/16, index chunk 2/4.
162s Building reference seed array...  [0s]
162s Building query seed array...  [0.002s]
162s Computing hash join...  [0s]
162s Masking low complexity seeds...  [0s]
162s Searching alignments...  [0s]
162s Deallocating memory...  [0s]
162s Processing query block 1, reference block 1/1, shape 3/16, index chunk 3/4.
162s Building reference seed array...  [0s]
162s Building query seed array...  [0.002s]
162s Computing hash join...  [0s]
162s Masking low complexity seeds...  [0s]
162s Searching alignments...  [0s]
162s Deallocating memory...  [0s]
162s Processing query block 1, reference block 1/1, shape 3/16, index chunk 4/4.
162s Building reference seed array...  [0s]
162s Building query seed array...  [0.002s]
162s Computing hash join...  [0s]
162s Masking low complexity seeds...  [0s]
162s Searching alignments...  [0s]
162s Deallocating memory...  [0s]
162s Processing query block 1, reference block 1/1, shape 4/16, index chunk 1/4.
162s Building reference seed array...  [0s]
162s Building query seed array...  [0.002s]
162s Computing hash join...  [0s]
162s Masking low complexity seeds...  [0s]
162s Searching alignments...  [0s]
162s Deallocating memory...  [0s]
162s Processing query block 1, reference block 1/1, shape 4/16, index chunk 2/4.
162s Building reference seed array...  [0s]
162s Building query seed array...  [0.002s]
162s Computing hash join...  [0s]
162s Masking low complexity seeds...  [0s]
162s Searching alignments...  [0s]
162s Deallocating memory...  [0s]
162s Processing query block 1, reference block 1/1, shape 4/16, index chunk 3/4.
162s Building reference seed array...  [0s]
162s Building query seed array...  [0.002s]
162s Computing hash join...  [0s]
162s Masking low complexity seeds...  [0s]
162s Searching alignments...  [0s]
162s Deallocating memory...  [0s]
162s Processing query block 1, reference block 1/1, shape 4/16, index chunk 4/4.
162s Building reference seed array...  [0s]
162s Building query seed array...  [0.002s]
162s Computing hash join...  [0s]
162s Masking low complexity seeds...  [0s]
162s Searching alignments...  [0s]
162s Deallocating memory...  [0s]
162s Processing query block 1, reference block 1/1, shape 5/16, index chunk 1/4.
162s Building reference seed array...  [0s]
162s Building query seed array...  [0.002s]
162s Computing hash join...  [0s]
162s Masking low complexity seeds...  [0s]
162s Searching alignments...  [0s]
162s Deallocating memory...  [0s]
162s Processing query block 1, reference block 1/1, shape 5/16, index chunk 2/4.
162s Building reference seed array...  [0s]
162s Building query seed array...  [0.002s]
162s Computing hash join...  [0s]
162s Masking low complexity seeds...  [0s]
162s Searching alignments...  [0s]
162s Deallocating memory...  [0s]
162s Processing query block 1, reference block 1/1, shape 5/16, index chunk 3/4.
162s Building reference seed array...  [0s]
162s Building query seed array...  [0.002s]
162s Computing hash join...  [0s]
162s Masking low complexity seeds...  [0s]
162s Searching alignments...  [0s]
162s Deallocating memory...  [0s]
162s Processing query block 1, reference block 1/1, shape 5/16, index chunk 4/4.
162s Building reference seed array...  [0s]
162s Building query seed array...  [0.002s]
162s Computing hash join...  [0s]
162s Masking low complexity seeds...  [0s]
162s Searching alignments...  [0s]
162s Deallocating memory...  [0s]
162s Processing query block 1, reference block 1/1, shape 6/16, index chunk 1/4.
162s Building reference seed array...  [0s]
162s Building query seed array...  [0.002s]
162s Computing hash join...  [0s]
162s Masking low complexity seeds...  [0s]
162s Searching alignments...  [0s]
162s Deallocating memory...  [0s]
162s Processing query block 1, reference block 1/1, shape 6/16, index chunk 2/4.
162s Building reference seed array...  [0s]
162s Building query seed array...  [0.002s]
162s Computing hash join...  [0s]
162s Masking low complexity seeds...  [0s]
162s Searching alignments...  [0s]
162s Deallocating memory...  [0s]
162s Processing query block 1, reference block 1/1, shape 6/16, index chunk 3/4.
162s Building reference seed array...  [0s]
162s Building query seed array...  [0.003s]
162s Computing hash join...  [0s]
162s Masking low complexity seeds...  [0s]
162s Searching alignments...  [0s]
162s Deallocating memory...  [0s]
162s Processing query block 1, reference block 1/1, shape 6/16, index chunk 4/4.
162s Building reference seed array...  [0s]
162s Building query seed array...  [0.002s]
162s Computing hash join...  [0s]
162s Masking low complexity seeds...  [0s]
162s Searching alignments...  [0s]
162s Deallocating memory...  [0s]
162s Processing query block 1, reference block 1/1, shape 7/16, index chunk 1/4.
162s Building reference seed array...  [0s]
162s Building query seed array...  [0.002s]
162s Computing hash join...  [0s]
162s Masking low complexity seeds...  [0s]
162s Searching alignments...  [0s]
162s Deallocating memory...  [0s]
162s Processing query block 1, reference block 1/1, shape 7/16, index chunk 2/4.
162s Building reference seed array...  [0s]
162s Building query seed array...  [0.002s]
162s Computing hash join...  [0s]
162s Masking low complexity seeds...  [0s]
162s Searching alignments...  [0s]
162s Deallocating memory...  [0s]
162s Processing query block 1, reference block 1/1, shape 7/16, index chunk 3/4.
162s Building reference seed array...  [0s]
162s Building query seed array...  [0.002s]
162s Computing hash join...  [0s]
162s Masking low complexity seeds...  [0s]
162s Searching alignments...  [0s]
162s Deallocating memory...  [0s]
162s Processing query block 1, reference block 1/1, shape 7/16, index chunk 4/4.
162s Building reference seed array...  [0s]
162s Building query seed array...  [0.002s]
162s Computing hash join...  [0s]
162s Masking low complexity seeds...  [0s]
162s Searching alignments...  [0s]
162s Deallocating memory...  [0s]
162s Processing query block 1, reference block 1/1, shape 8/16, index chunk 1/4.
162s Building reference seed array...  [0s]
162s Building query seed array...  [0.002s]
162s Computing hash join...  [0s]
162s Masking low complexity seeds...  [0s]
162s Searching alignments...  [0s]
162s Deallocating memory...  [0s]
162s Processing query block 1, reference block 1/1, shape 8/16, index chunk 2/4.
162s Building reference seed array...  [0s]
162s Building query seed array...  [0.002s]
162s Computing hash join...  [0s]
162s Masking low complexity seeds...  [0s]
162s Searching alignments...  [0s]
162s Deallocating memory...  [0s]
162s Processing query block 1, reference block 1/1, shape 8/16, index chunk 3/4.
162s Building reference seed array...  [0s]
162s Building query seed array...  [0.003s]
162s Computing hash join...  [0s]
162s Masking low complexity seeds...  [0s]
162s Searching alignments...  [0s]
162s Deallocating memory...  [0s]
162s Processing query block 1, reference block 1/1, shape 8/16, index chunk 4/4.
162s Building reference seed array...  [0s]
162s Building query seed array...  [0.002s]
162s Computing hash join...  [0s]
162s Masking low complexity seeds...  [0s]
162s Searching alignments...  [0s]
162s Deallocating memory...  [0s]
162s Processing query block 1, reference block 1/1, shape 9/16, index chunk 1/4.
162s Building reference seed array...  [0s]
162s Building query seed array...  [0.002s]
162s Computing hash join...  [0s]
162s Masking low complexity seeds...  [0s]
162s Searching alignments...  [0s]
162s Deallocating memory...  [0s]
162s Processing query block 1, reference block 1/1, shape 9/16, index chunk 2/4.
162s Building reference seed array...  [0s]
162s Building query seed array...  [0.002s]
162s Computing hash join...  [0s]
162s Masking low complexity seeds...  [0s]
162s Searching alignments...  [0s]
162s Deallocating memory...  [0s]
162s Processing query block 1, reference block 1/1, shape 9/16, index chunk 3/4.
162s Building reference seed array...  [0s]
162s Building query seed array...  [0.002s]
162s Computing hash join...  [0s]
162s Masking low complexity seeds...  [0s]
162s Searching alignments...  [0s]
162s Deallocating memory...  [0s]
162s Processing query block 1, reference block 1/1, shape 9/16, index chunk 4/4.
162s Building reference seed array...  [0s]
162s Building query seed array...  [0.002s]
162s Computing hash join...  [0s]
162s Masking low complexity seeds...  [0s]
162s Searching alignments...  [0s]
162s Deallocating memory...  [0s]
162s Processing query block 1, reference block 1/1, shape 10/16, index chunk 1/4.
162s Building reference seed array...  [0s]
162s Building query seed array...  [0.002s]
162s Computing hash join...  [0s]
162s Masking low complexity seeds...  [0s]
162s Searching alignments...  [0s]
162s Deallocating memory...  [0s]
162s Processing query block 1, reference block 1/1, shape 10/16, index chunk 2/4.
162s Building reference seed array...  [0s]
162s Building query seed array...  [0.002s]
162s Computing hash join...  [0s]
162s Masking low complexity seeds...  [0s]
162s Searching alignments...  [0s]
162s Deallocating memory...  [0s]
162s Processing query block 1, reference block 1/1, shape 10/16, index chunk 3/4.
162s Building reference seed array...  [0s]
162s Building query seed array...  [0.002s]
162s Computing hash join...  [0s]
162s Masking low complexity seeds...  [0s]
162s Searching alignments...  [0s]
162s Deallocating memory...  [0s]
162s Processing query block 1, reference block 1/1, shape 10/16, index chunk 4/4.
162s Building reference seed array...  [0s]
162s Building query seed array...  [0.002s]
162s Computing hash join...  [0s]
162s Masking low complexity seeds...  [0s]
162s Searching alignments...  [0s]
162s Deallocating memory...  [0s]
162s Processing query block 1, reference block 1/1, shape 11/16, index chunk 1/4.
162s Building reference seed array...  [0s]
162s Building query seed array...  [0.002s]
162s Computing hash join...  [0s]
162s Masking low complexity seeds...  [0s]
162s Searching alignments...  [0s]
162s Deallocating memory...  [0s]
162s Processing query block 1, reference block 1/1, shape 11/16, index chunk 2/4.
162s Building reference seed array...  [0s]
162s Building query seed array...  [0.002s]
162s Computing hash join...  [0s]
162s Masking low complexity seeds...  [0s]
162s Searching alignments...  [0s]
162s Deallocating memory...  [0s]
162s Processing query block 1, reference block 1/1, shape 11/16, index chunk 3/4.
162s Building reference seed array...  [0s]
162s Building query seed array...  [0.002s]
162s Computing hash join...  [0s]
162s Masking low complexity seeds...  [0s]
162s Searching alignments...  [0s]
162s Deallocating memory...  [0s]
162s Processing query block 1, reference block 1/1, shape 11/16, index chunk 4/4.
162s Building reference seed array...  [0s]
162s Building query seed array...  [0.002s]
162s Computing hash join...  [0s]
162s Masking low complexity seeds...  [0s]
162s Searching alignments...  [0s]
162s Deallocating memory...  [0s]
162s Processing query block 1, reference block 1/1, shape 12/16, index chunk 1/4.
162s Building reference seed array...  [0s]
162s Building query seed array...  [0.002s]
162s Computing hash join...  [0s]
162s Masking low complexity seeds...  [0s]
162s Searching alignments...  [0s]
162s Deallocating memory...  [0s]
162s Processing query block 1, reference block 1/1, shape 12/16, index chunk 2/4.
162s Building reference seed array...  [0s]
162s Building query seed array...  [0.002s]
162s Computing hash join...  [0s]
162s Masking low complexity seeds...  [0s]
162s Searching alignments...  [0s]
162s Deallocating memory...  [0s]
162s Processing query block 1, reference block 1/1, shape 12/16, index chunk 3/4.
162s Building reference seed array...  [0s]
162s Building query seed array...  [0.002s]
162s Computing hash join...  [0s]
162s Masking low complexity seeds...  [0s]
162s Searching alignments...  [0s]
162s Deallocating memory...  [0s]
162s Processing query block 1, reference block 1/1, shape 12/16, index chunk 4/4.
162s Building reference seed array...  [0s]
162s Building query seed array...  [0.002s]
162s Computing hash join...  [0s]
162s Masking low complexity seeds...  [0s]
162s Searching alignments...  [0s]
162s Deallocating memory...  [0s]
162s Processing query block 1, reference block 1/1, shape 13/16, index chunk 1/4.
162s Building reference seed array...  [0s]
162s Building query seed array...  [0.002s]
162s Computing hash join...  [0s]
162s Masking low complexity seeds...  [0s]
162s Searching alignments...  [0s]
162s Deallocating memory...  [0s]
162s Processing query block 1, reference block 1/1, shape 13/16, index chunk 2/4.
162s Building reference seed array...  [0s]
162s Building query seed array...  [0.002s]
162s Computing hash join...  [0s]
162s Masking low complexity seeds...  [0s]
162s Searching alignments...  [0s]
162s Deallocating memory...  [0s]
162s Processing query block 1, reference block 1/1, shape 13/16, index chunk 3/4.
162s Building reference seed array...  [0s]
162s Building query seed array...  [0.002s]
162s Computing hash join...  [0s]
162s Masking low complexity seeds...  [0s]
162s Searching alignments...  [0s]
162s Deallocating memory...  [0s]
162s Processing query block 1, reference block 1/1, shape 13/16, index chunk 4/4.
162s Building reference seed array...  [0s]
162s Building query seed array...  [0.002s]
162s Computing hash join...  [0s]
162s Masking low complexity seeds...  [0s]
162s Searching alignments...  [0s]
162s Deallocating memory...  [0s]
162s Processing query block 1, reference block 1/1, shape 14/16, index chunk 1/4.
162s Building reference seed array...  [0s]
162s Building query seed array...  [0.002s]
162s Computing hash join...  [0s]
162s Masking low complexity seeds...  [0s]
162s Searching alignments...  [0s]
162s Deallocating memory...  [0s]
162s Processing query block 1, reference block 1/1, shape 14/16, index chunk 2/4.
162s Building reference seed array...  [0s]
162s Building query seed array...  [0.002s]
162s Computing hash join...  [0s]
162s Masking low complexity seeds...  [0s]
162s Searching alignments...  [0s]
162s Deallocating memory...  [0s]
162s Processing query block 1, reference block 1/1, shape 14/16, index chunk 3/4.
162s Building reference seed array...  [0s]
162s Building query seed array...  [0.002s]
162s Computing hash join...  [0s]
162s Masking low complexity seeds...  [0s]
162s Searching alignments...  [0s]
162s Deallocating memory...  [0s]
162s Processing query block 1, reference block 1/1, shape 14/16, index chunk 4/4.
162s Building reference seed array...  [0s]
162s Building query seed array...  [0.002s]
162s Computing hash join...  [0s]
162s Masking low complexity seeds...  [0s]
162s Searching alignments...  [0s]
162s Deallocating memory...  [0s]
162s Processing query block 1, reference block 1/1, shape 15/16, index chunk 1/4.
162s Building reference seed array...  [0s]
162s Building query seed array...  [0.002s]
162s Computing hash join...  [0s]
162s Masking low complexity seeds...  [0s]
162s Searching alignments...  [0s]
162s Deallocating memory...  [0s]
162s Processing query block 1, reference block 1/1, shape 15/16, index chunk 2/4.
162s Building reference seed array...  [0s]
162s Building query seed array...  [0.002s]
162s Computing hash join...  [0s]
162s Masking low complexity seeds...  [0s]
162s Searching alignments...  [0s]
162s Deallocating memory...  [0s]
162s Processing query block 1, reference block 1/1, shape 15/16, index chunk 3/4.
162s Building reference seed array...  [0s]
162s Building query seed array...  [0.002s]
162s Computing hash join...  [0s]
162s Masking low complexity seeds...  [0s]
162s Searching alignments...  [0s]
162s Deallocating memory...  [0s]
162s Processing query block 1, reference block 1/1, shape 15/16, index chunk 4/4.
162s Building reference seed array...  [0s]
162s Building query seed array...  [0.002s]
162s Computing hash join...  [0s]
162s Masking low complexity seeds...  [0s]
162s Searching alignments...  [0s]
162s Deallocating memory...  [0s]
162s Processing query block 1, reference block 1/1, shape 16/16, index chunk 1/4.
162s Building reference seed array...  [0s]
162s Building query seed array...  [0.002s]
162s Computing hash join...  [0s]
162s Masking low complexity seeds...  [0s]
162s Searching alignments...  [0s]
162s Deallocating memory...  [0s]
162s Processing query block 1, reference block 1/1, shape 16/16, index chunk 2/4.
162s Building reference seed array...  [0s]
162s Building query seed array...  [0.002s]
162s Computing hash join...  [0s]
162s Masking low complexity seeds...  [0s]
162s Searching alignments...  [0s]
162s Deallocating memory...  [0s]
162s Processing query block 1, reference block 1/1, shape 16/16, index chunk 3/4.
162s Building reference seed array...  [0s]
162s Building query seed array...  [0.002s]
162s Computing hash join...  [0s]
162s Masking low complexity seeds...  [0s]
162s Searching alignments...  [0s]
162s Deallocating memory...  [0s]
162s Processing query block 1, reference block 1/1, shape 16/16, index chunk 4/4.
162s Building reference seed array...  [0s]
162s Building query seed array...  [0.002s]
162s Computing hash join...  [0s]
162s Masking low complexity seeds...  [0s]
162s Searching alignments...  [0s]
162s Deallocating memory...  [0s]
162s Deallocating buffers...  [0s]
162s Clearing query masking...  [0s]
162s Computing alignments... Loading trace points...  [0s]
162s Sorting trace points...  [0s]
162s Computing alignments...  [0.001s]
162s Deallocating buffers...  [0s]
162s Loading trace points...  [0s]
162s  [0.002s]
162s Deallocating reference...  [0s]
162s Loading reference sequences...  [0s]
162s Deallocating buffers...  [0s]
162s Deallocating queries...  [0s]
162s Loading query sequences...  [0s]
162s Closing the input file...  [0s]
162s Closing the output file...  [0s]
162s Closing the database...  [0s]
162s Cleaning up...  [0s]
162s Total time = 0.32s
162s Reported 1 pairwise alignments, 1 HSPs.
162s 1 queries aligned.
162s + diamond blastp --threads 1 --db test/L.faa.diamond --query test/M.faa --out /tmp/tmp.gdxNHDneSh/M.faa.vs.L.faa.diamond -e 1e-05 --outfmt 6 --sensitive
162s diamond v2.1.9.163 (C) Max Planck Society for the Advancement of Science, Benjamin Buchfink, University of Tuebingen
162s Documentation, support and updates available at http://www.diamondsearch.org
162s Please cite: http://dx.doi.org/10.1038/s41592-021-01101-x Nature Methods (2021)
162s 
162s #CPU threads: 1
162s Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1)
162s Temporary directory: /tmp/tmp.gdxNHDneSh
162s #Target sequences to report alignments for: 25
162s Opening the database...  [0s]
162s Database: test/L.faa.diamond (type: Diamond database, sequences: 40, letters: 26652)
162s Block size = 2000000000
162s Opening the input file...  [0s]
162s Opening the output file...  [0s]
162s Loading query sequences...  [0s]
162s Masking queries...  [0.008s]
162s Algorithm: Double-indexed
162s Building query histograms...  [0.006s]
162s Seeking in database...  [0s]
162s Loading reference sequences...  [0s]
162s Masking reference...  [0.005s]
162s Initializing temporary storage...  [0s]
162s Building reference histograms...  [0.007s]
162s Allocating buffers...  [0s]
162s Processing query block 1, reference block 1/1, shape 1/16, index chunk 1/4.
162s Building reference seed array...  [0.001s]
162s Building query seed array...  [0.001s]
162s Computing hash join...  [0s]
162s Masking low complexity seeds...  [0s]
162s Searching alignments...  [0.006s]
162s Deallocating memory...  [0s]
162s Processing query block 1, reference block 1/1, shape 1/16, index chunk 2/4.
162s Building reference seed array...  [0.001s]
162s Building query seed array...  [0.001s]
162s Computing hash join...  [0s]
162s Masking low complexity seeds...  [0s]
162s Searching alignments...  [0.005s]
162s Deallocating memory...  [0s]
162s Processing query block 1, reference block 1/1, shape 1/16, index chunk 3/4.
162s Building reference seed array...  [0.001s]
162s Building query seed array...  [0.001s]
162s Computing hash join...  [0s]
162s Masking low complexity seeds...  [0s]
162s Searching alignments...  [0.005s]
162s Deallocating memory...  [0s]
162s Processing query block 1, reference block 1/1, shape 1/16, index chunk 4/4.
162s Building reference seed array...  [0.001s]
162s Building query seed array...  [0.001s]
162s Computing hash join...  [0s]
162s Masking low complexity seeds...  [0s]
162s Searching alignments...  [0.005s]
162s Deallocating memory...  [0s]
162s Processing query block 1, reference block 1/1, shape 2/16, index chunk 1/4.
162s Building reference seed array...  [0.001s]
162s Building query seed array...  [0.001s]
162s Computing hash join...  [0s]
162s Masking low complexity seeds...  [0s]
162s Searching alignments...  [0.005s]
162s Deallocating memory...  [0s]
162s Processing query block 1, reference block 1/1, shape 2/16, index chunk 2/4.
162s Building reference seed array...  [0.001s]
162s Building query seed array...  [0.001s]
162s Computing hash join...  [0s]
162s Masking low complexity seeds...  [0s]
162s Searching alignments...  [0.004s]
162s Deallocating memory...  [0s]
162s Processing query block 1, reference block 1/1, shape 2/16, index chunk 3/4.
162s Building reference seed array...  [0.001s]
162s Building query seed array...  [0.001s]
162s Computing hash join...  [0s]
162s Masking low complexity seeds...  [0s]
162s Searching alignments...  [0.004s]
162s Deallocating memory...  [0s]
162s Processing query block 1, reference block 1/1, shape 2/16, index chunk 4/4.
162s Building reference seed array...  [0.001s]
162s Building query seed array...  [0.001s]
162s Computing hash join...  [0s]
162s Masking low complexity seeds...  [0s]
162s Searching alignments...  [0.004s]
162s Deallocating memory...  [0s]
162s Processing query block 1, reference block 1/1, shape 3/16, index chunk 1/4.
162s Building reference seed array...  [0.001s]
162s Building query seed array...  [0.001s]
162s Computing hash join...  [0s]
162s Masking low complexity seeds...  [0s]
162s Searching alignments...  [0.005s]
162s Deallocating memory...  [0s]
162s Processing query block 1, reference block 1/1, shape 3/16, index chunk 2/4.
162s Building reference seed array...  [0.001s]
162s Building query seed array...  [0.001s]
162s Computing hash join...  [0s]
162s Masking low complexity seeds...  [0s]
162s Searching alignments...  [0.005s]
162s Deallocating memory...  [0s]
162s Processing query block 1, reference block 1/1, shape 3/16, index chunk 3/4.
162s Building reference seed array...  [0.001s]
162s Building query seed array...  [0.001s]
162s Computing hash join...  [0s]
162s Masking low complexity seeds...  [0s]
162s Searching alignments...  [0.004s]
162s Deallocating memory...  [0s]
162s Processing query block 1, reference block 1/1, shape 3/16, index chunk 4/4.
163s Building reference seed array...  [0.001s]
163s Building query seed array...  [0.001s]
163s Computing hash join...  [0s]
163s Masking low complexity seeds...  [0s]
163s Searching alignments...  [0.004s]
163s Deallocating memory...  [0s]
163s Processing query block 1, reference block 1/1, shape 4/16, index chunk 1/4.
163s Building reference seed array...  [0.001s]
163s Building query seed array...  [0.001s]
163s Computing hash join...  [0s]
163s Masking low complexity seeds...  [0s]
163s Searching alignments...  [0.004s]
163s Deallocating memory...  [0s]
163s Processing query block 1, reference block 1/1, shape 4/16, index chunk 2/4.
163s Building reference seed array...  [0.001s]
163s Building query seed array...  [0.001s]
163s Computing hash join...  [0s]
163s Masking low complexity seeds...  [0s]
163s Searching alignments...  [0.005s]
163s Deallocating memory...  [0s]
163s Processing query block 1, reference block 1/1, shape 4/16, index chunk 3/4.
163s Building reference seed array...  [0.001s]
163s Building query seed array...  [0.001s]
163s Computing hash join...  [0s]
163s Masking low complexity seeds...  [0s]
163s Searching alignments...  [0.004s]
163s Deallocating memory...  [0s]
163s Processing query block 1, reference block 1/1, shape 4/16, index chunk 4/4.
163s Building reference seed array...  [0.001s]
163s Building query seed array...  [0.001s]
163s Computing hash join...  [0s]
163s Masking low complexity seeds...  [0s]
163s Searching alignments...  [0.004s]
163s Deallocating memory...  [0s]
163s Processing query block 1, reference block 1/1, shape 5/16, index chunk 1/4.
163s Building reference seed array...  [0.001s]
163s Building query seed array...  [0.001s]
163s Computing hash join...  [0s]
163s Masking low complexity seeds...  [0s]
163s Searching alignments...  [0.005s]
163s Deallocating memory...  [0s]
163s Processing query block 1, reference block 1/1, shape 5/16, index chunk 2/4.
163s Building reference seed array...  [0.001s]
163s Building query seed array...  [0.001s]
163s Computing hash join...  [0s]
163s Masking low complexity seeds...  [0s]
163s Searching alignments...  [0.004s]
163s Deallocating memory...  [0s]
163s Processing query block 1, reference block 1/1, shape 5/16, index chunk 3/4.
163s Building reference seed array...  [0.001s]
163s Building query seed array...  [0.001s]
163s Computing hash join...  [0s]
163s Masking low complexity seeds...  [0s]
163s Searching alignments...  [0.004s]
163s Deallocating memory...  [0s]
163s Processing query block 1, reference block 1/1, shape 5/16, index chunk 4/4.
163s Building reference seed array...  [0.001s]
163s Building query seed array...  [0.001s]
163s Computing hash join...  [0s]
163s Masking low complexity seeds...  [0s]
163s Searching alignments...  [0.005s]
163s Deallocating memory...  [0s]
163s Processing query block 1, reference block 1/1, shape 6/16, index chunk 1/4.
163s Building reference seed array...  [0.001s]
163s Building query seed array...  [0.001s]
163s Computing hash join...  [0s]
163s Masking low complexity seeds...  [0s]
163s Searching alignments...  [0.005s]
163s Deallocating memory...  [0s]
163s Processing query block 1, reference block 1/1, shape 6/16, index chunk 2/4.
163s Building reference seed array...  [0.001s]
163s Building query seed array...  [0.001s]
163s Computing hash join...  [0s]
163s Masking low complexity seeds...  [0s]
163s Searching alignments...  [0.005s]
163s Deallocating memory...  [0s]
163s Processing query block 1, reference block 1/1, shape 6/16, index chunk 3/4.
163s Building reference seed array...  [0.001s]
163s Building query seed array...  [0.001s]
163s Computing hash join...  [0s]
163s Masking low complexity seeds...  [0s]
163s Searching alignments...  [0.004s]
163s Deallocating memory...  [0s]
163s Processing query block 1, reference block 1/1, shape 6/16, index chunk 4/4.
163s Building reference seed array...  [0.001s]
163s Building query seed array...  [0.001s]
163s Computing hash join...  [0s]
163s Masking low complexity seeds...  [0s]
163s Searching alignments...  [0.004s]
163s Deallocating memory...  [0s]
163s Processing query block 1, reference block 1/1, shape 7/16, index chunk 1/4.
163s Building reference seed array...  [0.001s]
163s Building query seed array...  [0.001s]
163s Computing hash join...  [0s]
163s Masking low complexity seeds...  [0s]
163s Searching alignments...  [0.004s]
163s Deallocating memory...  [0s]
163s Processing query block 1, reference block 1/1, shape 7/16, index chunk 2/4.
163s Building reference seed array...  [0.001s]
163s Building query seed array...  [0.001s]
163s Computing hash join...  [0s]
163s Masking low complexity seeds...  [0s]
163s Searching alignments...  [0.004s]
163s Deallocating memory...  [0s]
163s Processing query block 1, reference block 1/1, shape 7/16, index chunk 3/4.
163s Building reference seed array...  [0.001s]
163s Building query seed array...  [0.001s]
163s Computing hash join...  [0s]
163s Masking low complexity seeds...  [0s]
163s Searching alignments...  [0.004s]
163s Deallocating memory...  [0s]
163s Processing query block 1, reference block 1/1, shape 7/16, index chunk 4/4.
163s Building reference seed array...  [0.001s]
163s Building query seed array...  [0.001s]
163s Computing hash join...  [0s]
163s Masking low complexity seeds...  [0s]
163s Searching alignments...  [0.004s]
163s Deallocating memory...  [0s]
163s Processing query block 1, reference block 1/1, shape 8/16, index chunk 1/4.
163s Building reference seed array...  [0.001s]
163s Building query seed array...  [0.001s]
163s Computing hash join...  [0s]
163s Masking low complexity seeds...  [0s]
163s Searching alignments...  [0.005s]
163s Deallocating memory...  [0s]
163s Processing query block 1, reference block 1/1, shape 8/16, index chunk 2/4.
163s Building reference seed array...  [0.001s]
163s Building query seed array...  [0.001s]
163s Computing hash join...  [0s]
163s Masking low complexity seeds...  [0s]
163s Searching alignments...  [0.004s]
163s Deallocating memory...  [0s]
163s Processing query block 1, reference block 1/1, shape 8/16, index chunk 3/4.
163s Building reference seed array...  [0.001s]
163s Building query seed array...  [0.001s]
163s Computing hash join...  [0s]
163s Masking low complexity seeds...  [0s]
163s Searching alignments...  [0.005s]
163s Deallocating memory...  [0s]
163s Processing query block 1, reference block 1/1, shape 8/16, index chunk 4/4.
163s Building reference seed array...  [0.001s]
163s Building query seed array...  [0.001s]
163s Computing hash join...  [0s]
163s Masking low complexity seeds...  [0s]
163s Searching alignments...  [0.004s]
163s Deallocating memory...  [0s]
163s Processing query block 1, reference block 1/1, shape 9/16, index chunk 1/4.
163s Building reference seed array...  [0.001s]
163s Building query seed array...  [0.001s]
163s Computing hash join...  [0s]
163s Masking low complexity seeds...  [0s]
163s Searching alignments...  [0.005s]
163s Deallocating memory...  [0s]
163s Processing query block 1, reference block 1/1, shape 9/16, index chunk 2/4.
163s Building reference seed array...  [0.001s]
163s Building query seed array...  [0.001s]
163s Computing hash join...  [0s]
163s Masking low complexity seeds...  [0s]
163s Searching alignments...  [0.004s]
163s Deallocating memory...  [0s]
163s Processing query block 1, reference block 1/1, shape 9/16, index chunk 3/4.
163s Building reference seed array...  [0.001s]
163s Building query seed array...  [0.001s]
163s Computing hash join...  [0s]
163s Masking low complexity seeds...  [0s]
163s Searching alignments...  [0.005s]
163s Deallocating memory...  [0s]
163s Processing query block 1, reference block 1/1, shape 9/16, index chunk 4/4.
163s Building reference seed array...  [0.001s]
163s Building query seed array...  [0.001s]
163s Computing hash join...  [0s]
163s Masking low complexity seeds...  [0s]
163s Searching alignments...  [0.004s]
163s Deallocating memory...  [0s]
163s Processing query block 1, reference block 1/1, shape 10/16, index chunk 1/4.
163s Building reference seed array...  [0.001s]
163s Building query seed array...  [0.001s]
163s Computing hash join...  [0s]
163s Masking low complexity seeds...  [0s]
163s Searching alignments...  [0.005s]
163s Deallocating memory...  [0s]
163s Processing query block 1, reference block 1/1, shape 10/16, index chunk 2/4.
163s Building reference seed array...  [0.001s]
163s Building query seed array...  [0.001s]
163s Computing hash join...  [0s]
163s Masking low complexity seeds...  [0s]
163s Searching alignments...  [0.004s]
163s Deallocating memory...  [0s]
163s Processing query block 1, reference block 1/1, shape 10/16, index chunk 3/4.
163s Building reference seed array...  [0.001s]
163s Building query seed array...  [0.001s]
163s Computing hash join...  [0s]
163s Masking low complexity seeds...  [0s]
163s Searching alignments...  [0.004s]
163s Deallocating memory...  [0s]
163s Processing query block 1, reference block 1/1, shape 10/16, index chunk 4/4.
163s Building reference seed array...  [0.001s]
163s Building query seed array...  [0.001s]
163s Computing hash join...  [0s]
163s Masking low complexity seeds...  [0s]
163s Searching alignments...  [0.004s]
163s Deallocating memory...  [0s]
163s Processing query block 1, reference block 1/1, shape 11/16, index chunk 1/4.
163s Building reference seed array...  [0.001s]
163s Building query seed array...  [0.001s]
163s Computing hash join...  [0s]
163s Masking low complexity seeds...  [0s]
163s Searching alignments...  [0.005s]
163s Deallocating memory...  [0s]
163s Processing query block 1, reference block 1/1, shape 11/16, index chunk 2/4.
163s Building reference seed array...  [0.001s]
163s Building query seed array...  [0.001s]
163s Computing hash join...  [0s]
163s Masking low complexity seeds...  [0s]
163s Searching alignments...  [0.005s]
163s Deallocating memory...  [0s]
163s Processing query block 1, reference block 1/1, shape 11/16, index chunk 3/4.
163s Building reference seed array...  [0.001s]
163s Building query seed array...  [0.001s]
163s Computing hash join...  [0s]
163s Masking low complexity seeds...  [0s]
163s Searching alignments...  [0.005s]
163s Deallocating memory...  [0s]
163s Processing query block 1, reference block 1/1, shape 11/16, index chunk 4/4.
163s Building reference seed array...  [0.001s]
163s Building query seed array...  [0.001s]
163s Computing hash join...  [0s]
163s Masking low complexity seeds...  [0s]
163s Searching alignments...  [0.004s]
163s Deallocating memory...  [0s]
163s Processing query block 1, reference block 1/1, shape 12/16, index chunk 1/4.
163s Building reference seed array...  [0.001s]
163s Building query seed array...  [0.001s]
163s Computing hash join...  [0s]
163s Masking low complexity seeds...  [0s]
163s Searching alignments...  [0.004s]
163s Deallocating memory...  [0s]
163s Processing query block 1, reference block 1/1, shape 12/16, index chunk 2/4.
163s Building reference seed array...  [0.001s]
163s Building query seed array...  [0.001s]
163s Computing hash join...  [0s]
163s Masking low complexity seeds...  [0s]
163s Searching alignments...  [0.005s]
163s Deallocating memory...  [0s]
163s Processing query block 1, reference block 1/1, shape 12/16, index chunk 3/4.
163s Building reference seed array...  [0.001s]
163s Building query seed array...  [0.001s]
163s Computing hash join...  [0s]
163s Masking low complexity seeds...  [0s]
163s Searching alignments...  [0.004s]
163s Deallocating memory...  [0s]
163s Processing query block 1, reference block 1/1, shape 12/16, index chunk 4/4.
163s Building reference seed array...  [0.001s]
163s Building query seed array...  [0.001s]
163s Computing hash join...  [0s]
163s Masking low complexity seeds...  [0s]
163s Searching alignments...  [0.004s]
163s Deallocating memory...  [0s]
163s Processing query block 1, reference block 1/1, shape 13/16, index chunk 1/4.
163s Building reference seed array...  [0.001s]
163s Building query seed array...  [0.001s]
163s Computing hash join...  [0s]
163s Masking low complexity seeds...  [0s]
163s Searching alignments...  [0.004s]
163s Deallocating memory...  [0s]
163s Processing query block 1, reference block 1/1, shape 13/16, index chunk 2/4.
163s Building reference seed array...  [0.001s]
163s Building query seed array...  [0.001s]
163s Computing hash join...  [0s]
163s Masking low complexity seeds...  [0s]
163s Searching alignments...  [0.005s]
163s Deallocating memory...  [0s]
163s Processing query block 1, reference block 1/1, shape 13/16, index chunk 3/4.
163s Building reference seed array...  [0.001s]
163s Building query seed array...  [0.001s]
163s Computing hash join...  [0s]
163s Masking low complexity seeds...  [0s]
163s Searching alignments...  [0.004s]
163s Deallocating memory...  [0s]
163s Processing query block 1, reference block 1/1, shape 13/16, index chunk 4/4.
163s Building reference seed array...  [0.001s]
163s Building query seed array...  [0.001s]
163s Computing hash join...  [0s]
163s Masking low complexity seeds...  [0s]
163s Searching alignments...  [0.005s]
163s Deallocating memory...  [0s]
163s Processing query block 1, reference block 1/1, shape 14/16, index chunk 1/4.
163s Building reference seed array...  [0.001s]
163s Building query seed array...  [0.001s]
163s Computing hash join...  [0s]
163s Masking low complexity seeds...  [0s]
163s Searching alignments...  [0.005s]
163s Deallocating memory...  [0s]
163s Processing query block 1, reference block 1/1, shape 14/16, index chunk 2/4.
163s Building reference seed array...  [0.001s]
163s Building query seed array...  [0.001s]
163s Computing hash join...  [0s]
163s Masking low complexity seeds...  [0s]
163s Searching alignments...  [0.005s]
163s Deallocating memory...  [0s]
163s Processing query block 1, reference block 1/1, shape 14/16, index chunk 3/4.
163s Building reference seed array...  [0.001s]
163s Building query seed array...  [0.001s]
163s Computing hash join...  [0s]
163s Masking low complexity seeds...  [0s]
163s Searching alignments...  [0.005s]
163s Deallocating memory...  [0s]
163s Processing query block 1, reference block 1/1, shape 14/16, index chunk 4/4.
163s Building reference seed array...  [0.001s]
163s Building query seed array...  [0.001s]
163s Computing hash join...  [0s]
163s Masking low complexity seeds...  [0s]
163s Searching alignments...  [0.005s]
163s Deallocating memory...  [0s]
163s Processing query block 1, reference block 1/1, shape 15/16, index chunk 1/4.
163s Building reference seed array...  [0.001s]
163s Building query seed array...  [0.001s]
163s Computing hash join...  [0s]
163s Masking low complexity seeds...  [0s]
163s Searching alignments...  [0.005s]
163s Deallocating memory...  [0s]
163s Processing query block 1, reference block 1/1, shape 15/16, index chunk 2/4.
163s Building reference seed array...  [0.001s]
163s Building query seed array...  [0.001s]
163s Computing hash join...  [0s]
163s Masking low complexity seeds...  [0s]
163s Searching alignments...  [0.005s]
163s Deallocating memory...  [0s]
163s Processing query block 1, reference block 1/1, shape 15/16, index chunk 3/4.
163s Building reference seed array...  [0.001s]
163s Building query seed array...  [0.001s]
163s Computing hash join...  [0s]
163s Masking low complexity seeds...  [0s]
163s Searching alignments...  [0.005s]
163s Deallocating memory...  [0s]
163s Processing query block 1, reference block 1/1, shape 15/16, index chunk 4/4.
163s Building reference seed array...  [0.001s]
163s Building query seed array...  [0.001s]
163s Computing hash join...  [0s]
163s Masking low complexity seeds...  [0s]
163s Searching alignments...  [0.004s]
163s Deallocating memory...  [0s]
163s Processing query block 1, reference block 1/1, shape 16/16, index chunk 1/4.
163s Building reference seed array...  [0.001s]
163s Building query seed array...  [0.001s]
163s Computing hash join...  [0s]
163s Masking low complexity seeds...  [0s]
163s Searching alignments...  [0.005s]
163s Deallocating memory...  [0s]
163s Processing query block 1, reference block 1/1, shape 16/16, index chunk 2/4.
163s Building reference seed array...  [0.001s]
163s Building query seed array...  [0.001s]
163s Computing hash join...  [0s]
163s Masking low complexity seeds...  [0s]
163s Searching alignments...  [0.005s]
163s Deallocating memory...  [0s]
163s Processing query block 1, reference block 1/1, shape 16/16, index chunk 3/4.
163s Building reference seed array...  [0.001s]
163s Building query seed array...  [0.001s]
163s Computing hash join...  [0s]
163s Masking low complexity seeds...  [0s]
163s Searching alignments...  [0.004s]
163s Deallocating memory...  [0s]
163s Processing query block 1, reference block 1/1, shape 16/16, index chunk 4/4.
163s Building reference seed array...  [0.001s]
163s Building query seed array...  [0.001s]
163s Computing hash join...  [0s]
163s Masking low complexity seeds...  [0s]
163s Searching alignments...  [0.004s]
163s Deallocating memory...  [0s]
163s Deallocating buffers...  [0s]
163s Clearing query masking...  [0s]
163s Computing alignments... Loading trace points...  [0.001s]
163s Sorting trace points...  [0s]
164s Computing alignments...  [0.616s]
164s Deallocating buffers...  [0s]
164s Loading trace points...  [0s]
164s  [0.619s]
164s Deallocating reference...  [0s]
164s Loading reference sequences...  [0s]
164s Deallocating buffers...  [0s]
164s Deallocating queries...  [0s]
164s Loading query sequences...  [0s]
164s Closing the input file...  [0s]
164s Closing the output file...  [0s]
164s Closing the database...  [0s]
164s Cleaning up...  [0s]
164s Total time = 1.272s
164s Reported 390 pairwise alignments, 390 HSPs.
164s 39 queries aligned.
164s + diamond blastp --threads 1 --db test/M.faa.diamond --query test/L.faa --out /tmp/tmp.gdxNHDneSh/L.faa.vs.M.faa.diamond -e 1e-05 --outfmt 6 --sensitive
164s diamond v2.1.9.163 (C) Max Planck Society for the Advancement of Science, Benjamin Buchfink, University of Tuebingen
164s Documentation, support and updates available at http://www.diamondsearch.org
164s Please cite: http://dx.doi.org/10.1038/s41592-021-01101-x Nature Methods (2021)
164s 
164s #CPU threads: 1
164s Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1)
164s Temporary directory: /tmp/tmp.gdxNHDneSh
164s #Target sequences to report alignments for: 25
164s Opening the database...  [0s]
164s Database: test/M.faa.diamond (type: Diamond database, sequences: 40, letters: 26963)
164s Block size = 2000000000
164s Opening the input file...  [0s]
164s Opening the output file...  [0s]
164s Loading query sequences...  [0s]
164s Masking queries...  [0.008s]
164s Algorithm: Double-indexed
164s Building query histograms...  [0.006s]
164s Seeking in database...  [0s]
164s Loading reference sequences...  [0s]
164s Masking reference...  [0.005s]
164s Initializing temporary storage...  [0s]
164s Building reference histograms...  [0.006s]
164s Allocating buffers...  [0s]
164s Processing query block 1, reference block 1/1, shape 1/16, index chunk 1/4.
164s Building reference seed array...  [0.001s]
164s Building query seed array...  [0.001s]
164s Computing hash join...  [0s]
164s Masking low complexity seeds...  [0s]
164s Searching alignments...  [0.006s]
164s Deallocating memory...  [0s]
164s Processing query block 1, reference block 1/1, shape 1/16, index chunk 2/4.
164s Building reference seed array...  [0.001s]
164s Building query seed array...  [0.001s]
164s Computing hash join...  [0s]
164s Masking low complexity seeds...  [0s]
164s Searching alignments...  [0.005s]
164s Deallocating memory...  [0s]
164s Processing query block 1, reference block 1/1, shape 1/16, index chunk 3/4.
164s Building reference seed array...  [0.001s]
164s Building query seed array...  [0.001s]
164s Computing hash join...  [0s]
164s Masking low complexity seeds...  [0s]
164s Searching alignments...  [0.005s]
164s Deallocating memory...  [0s]
164s Processing query block 1, reference block 1/1, shape 1/16, index chunk 4/4.
164s Building reference seed array...  [0.001s]
164s Building query seed array...  [0.001s]
164s Computing hash join...  [0s]
164s Masking low complexity seeds...  [0s]
164s Searching alignments...  [0.005s]
164s Deallocating memory...  [0s]
164s Processing query block 1, reference block 1/1, shape 2/16, index chunk 1/4.
164s Building reference seed array...  [0.001s]
164s Building query seed array...  [0.001s]
164s Computing hash join...  [0s]
164s Masking low complexity seeds...  [0s]
164s Searching alignments...  [0.005s]
164s Deallocating memory...  [0s]
164s Processing query block 1, reference block 1/1, shape 2/16, index chunk 2/4.
164s Building reference seed array...  [0.001s]
164s Building query seed array...  [0.001s]
164s Computing hash join...  [0s]
164s Masking low complexity seeds...  [0s]
164s Searching alignments...  [0.004s]
164s Deallocating memory...  [0s]
164s Processing query block 1, reference block 1/1, shape 2/16, index chunk 3/4.
164s Building reference seed array...  [0.001s]
164s Building query seed array...  [0.001s]
164s Computing hash join...  [0s]
164s Masking low complexity seeds...  [0s]
164s Searching alignments...  [0.004s]
164s Deallocating memory...  [0s]
164s Processing query block 1, reference block 1/1, shape 2/16, index chunk 4/4.
164s Building reference seed array...  [0.001s]
164s Building query seed array...  [0.001s]
164s Computing hash join...  [0s]
164s Masking low complexity seeds...  [0s]
164s Searching alignments...  [0.004s]
164s Deallocating memory...  [0s]
164s Processing query block 1, reference block 1/1, shape 3/16, index chunk 1/4.
164s Building reference seed array...  [0.001s]
164s Building query seed array...  [0.001s]
164s Computing hash join...  [0s]
164s Masking low complexity seeds...  [0s]
164s Searching alignments...  [0.005s]
164s Deallocating memory...  [0s]
164s Processing query block 1, reference block 1/1, shape 3/16, index chunk 2/4.
164s Building reference seed array...  [0.001s]
164s Building query seed array...  [0.001s]
164s Computing hash join...  [0s]
164s Masking low complexity seeds...  [0s]
164s Searching alignments...  [0.005s]
164s Deallocating memory...  [0s]
164s Processing query block 1, reference block 1/1, shape 3/16, index chunk 3/4.
164s Building reference seed array...  [0.001s]
164s Building query seed array...  [0.001s]
164s Computing hash join...  [0s]
164s Masking low complexity seeds...  [0s]
164s Searching alignments...  [0.004s]
164s Deallocating memory...  [0s]
164s Processing query block 1, reference block 1/1, shape 3/16, index chunk 4/4.
164s Building reference seed array...  [0.001s]
164s Building query seed array...  [0.001s]
164s Computing hash join...  [0s]
164s Masking low complexity seeds...  [0s]
164s Searching alignments...  [0.004s]
164s Deallocating memory...  [0s]
164s Processing query block 1, reference block 1/1, shape 4/16, index chunk 1/4.
164s Building reference seed array...  [0.001s]
164s Building query seed array...  [0.001s]
164s Computing hash join...  [0s]
164s Masking low complexity seeds...  [0s]
164s Searching alignments...  [0.005s]
164s Deallocating memory...  [0s]
164s Processing query block 1, reference block 1/1, shape 4/16, index chunk 2/4.
164s Building reference seed array...  [0.001s]
164s Building query seed array...  [0.001s]
164s Computing hash join...  [0s]
164s Masking low complexity seeds...  [0s]
164s Searching alignments...  [0.005s]
164s Deallocating memory...  [0s]
164s Processing query block 1, reference block 1/1, shape 4/16, index chunk 3/4.
164s Building reference seed array...  [0.001s]
164s Building query seed array...  [0.001s]
164s Computing hash join...  [0s]
164s Masking low complexity seeds...  [0s]
164s Searching alignments...  [0.004s]
164s Deallocating memory...  [0s]
164s Processing query block 1, reference block 1/1, shape 4/16, index chunk 4/4.
164s Building reference seed array...  [0.001s]
164s Building query seed array...  [0.001s]
164s Computing hash join...  [0s]
164s Masking low complexity seeds...  [0s]
164s Searching alignments...  [0.004s]
164s Deallocating memory...  [0s]
164s Processing query block 1, reference block 1/1, shape 5/16, index chunk 1/4.
164s Building reference seed array...  [0.001s]
164s Building query seed array...  [0.001s]
164s Computing hash join...  [0s]
164s Masking low complexity seeds...  [0s]
164s Searching alignments...  [0.005s]
164s Deallocating memory...  [0s]
164s Processing query block 1, reference block 1/1, shape 5/16, index chunk 2/4.
164s Building reference seed array...  [0.001s]
164s Building query seed array...  [0.001s]
164s Computing hash join...  [0s]
164s Masking low complexity seeds...  [0s]
164s Searching alignments...  [0.004s]
164s Deallocating memory...  [0s]
164s Processing query block 1, reference block 1/1, shape 5/16, index chunk 3/4.
164s Building reference seed array...  [0.001s]
164s Building query seed array...  [0.001s]
164s Computing hash join...  [0s]
164s Masking low complexity seeds...  [0s]
164s Searching alignments...  [0.004s]
164s Deallocating memory...  [0s]
164s Processing query block 1, reference block 1/1, shape 5/16, index chunk 4/4.
164s Building reference seed array...  [0.001s]
164s Building query seed array...  [0.001s]
164s Computing hash join...  [0s]
164s Masking low complexity seeds...  [0s]
164s Searching alignments...  [0.005s]
164s Deallocating memory...  [0s]
164s Processing query block 1, reference block 1/1, shape 6/16, index chunk 1/4.
164s Building reference seed array...  [0.001s]
164s Building query seed array...  [0.001s]
164s Computing hash join...  [0s]
164s Masking low complexity seeds...  [0s]
164s Searching alignments...  [0.005s]
164s Deallocating memory...  [0s]
164s Processing query block 1, reference block 1/1, shape 6/16, index chunk 2/4.
164s Building reference seed array...  [0.001s]
164s Building query seed array...  [0.001s]
164s Computing hash join...  [0s]
164s Masking low complexity seeds...  [0s]
164s Searching alignments...  [0.005s]
164s Deallocating memory...  [0s]
164s Processing query block 1, reference block 1/1, shape 6/16, index chunk 3/4.
164s Building reference seed array...  [0.001s]
164s Building query seed array...  [0.001s]
164s Computing hash join...  [0s]
164s Masking low complexity seeds...  [0s]
164s Searching alignments...  [0.004s]
164s Deallocating memory...  [0s]
164s Processing query block 1, reference block 1/1, shape 6/16, index chunk 4/4.
164s Building reference seed array...  [0.001s]
164s Building query seed array...  [0.001s]
164s Computing hash join...  [0s]
164s Masking low complexity seeds...  [0s]
164s Searching alignments...  [0.004s]
164s Deallocating memory...  [0s]
164s Processing query block 1, reference block 1/1, shape 7/16, index chunk 1/4.
164s Building reference seed array...  [0.001s]
164s Building query seed array...  [0.001s]
164s Computing hash join...  [0s]
164s Masking low complexity seeds...  [0s]
164s Searching alignments...  [0.004s]
164s Deallocating memory...  [0s]
164s Processing query block 1, reference block 1/1, shape 7/16, index chunk 2/4.
164s Building reference seed array...  [0.001s]
164s Building query seed array...  [0.001s]
164s Computing hash join...  [0s]
164s Masking low complexity seeds...  [0s]
164s Searching alignments...  [0.004s]
164s Deallocating memory...  [0s]
164s Processing query block 1, reference block 1/1, shape 7/16, index chunk 3/4.
164s Building reference seed array...  [0.001s]
164s Building query seed array...  [0.001s]
164s Computing hash join...  [0s]
164s Masking low complexity seeds...  [0s]
164s Searching alignments...  [0.004s]
164s Deallocating memory...  [0s]
164s Processing query block 1, reference block 1/1, shape 7/16, index chunk 4/4.
164s Building reference seed array...  [0.001s]
164s Building query seed array...  [0.001s]
164s Computing hash join...  [0s]
164s Masking low complexity seeds...  [0s]
164s Searching alignments...  [0.004s]
164s Deallocating memory...  [0s]
164s Processing query block 1, reference block 1/1, shape 8/16, index chunk 1/4.
164s Building reference seed array...  [0.001s]
164s Building query seed array...  [0.001s]
164s Computing hash join...  [0s]
164s Masking low complexity seeds...  [0s]
164s Searching alignments...  [0.005s]
164s Deallocating memory...  [0s]
164s Processing query block 1, reference block 1/1, shape 8/16, index chunk 2/4.
164s Building reference seed array...  [0.001s]
164s Building query seed array...  [0.001s]
164s Computing hash join...  [0s]
164s Masking low complexity seeds...  [0s]
164s Searching alignments...  [0.004s]
164s Deallocating memory...  [0s]
164s Processing query block 1, reference block 1/1, shape 8/16, index chunk 3/4.
164s Building reference seed array...  [0.001s]
164s Building query seed array...  [0.001s]
164s Computing hash join...  [0s]
164s Masking low complexity seeds...  [0s]
164s Searching alignments...  [0.005s]
164s Deallocating memory...  [0s]
164s Processing query block 1, reference block 1/1, shape 8/16, index chunk 4/4.
164s Building reference seed array...  [0.001s]
164s Building query seed array...  [0.001s]
164s Computing hash join...  [0s]
164s Masking low complexity seeds...  [0s]
164s Searching alignments...  [0.004s]
164s Deallocating memory...  [0s]
164s Processing query block 1, reference block 1/1, shape 9/16, index chunk 1/4.
164s Building reference seed array...  [0.001s]
164s Building query seed array...  [0.001s]
164s Computing hash join...  [0s]
164s Masking low complexity seeds...  [0s]
164s Searching alignments...  [0.005s]
164s Deallocating memory...  [0s]
164s Processing query block 1, reference block 1/1, shape 9/16, index chunk 2/4.
164s Building reference seed array...  [0.001s]
164s Building query seed array...  [0.001s]
164s Computing hash join...  [0s]
164s Masking low complexity seeds...  [0s]
164s Searching alignments...  [0.005s]
164s Deallocating memory...  [0s]
164s Processing query block 1, reference block 1/1, shape 9/16, index chunk 3/4.
164s Building reference seed array...  [0.001s]
164s Building query seed array...  [0.001s]
164s Computing hash join...  [0s]
164s Masking low complexity seeds...  [0s]
164s Searching alignments...  [0.004s]
164s Deallocating memory...  [0s]
164s Processing query block 1, reference block 1/1, shape 9/16, index chunk 4/4.
164s Building reference seed array...  [0.001s]
164s Building query seed array...  [0.001s]
164s Computing hash join...  [0s]
164s Masking low complexity seeds...  [0s]
164s Searching alignments...  [0.004s]
164s Deallocating memory...  [0s]
164s Processing query block 1, reference block 1/1, shape 10/16, index chunk 1/4.
164s Building reference seed array...  [0.001s]
164s Building query seed array...  [0.001s]
164s Computing hash join...  [0s]
164s Masking low complexity seeds...  [0s]
164s Searching alignments...  [0.005s]
164s Deallocating memory...  [0s]
164s Processing query block 1, reference block 1/1, shape 10/16, index chunk 2/4.
164s Building reference seed array...  [0.001s]
164s Building query seed array...  [0.001s]
164s Computing hash join...  [0s]
164s Masking low complexity seeds...  [0s]
164s Searching alignments...  [0.004s]
164s Deallocating memory...  [0s]
164s Processing query block 1, reference block 1/1, shape 10/16, index chunk 3/4.
164s Building reference seed array...  [0.001s]
164s Building query seed array...  [0.001s]
164s Computing hash join...  [0s]
164s Masking low complexity seeds...  [0s]
164s Searching alignments...  [0.004s]
164s Deallocating memory...  [0s]
164s Processing query block 1, reference block 1/1, shape 10/16, index chunk 4/4.
164s Building reference seed array...  [0.001s]
164s Building query seed array...  [0.001s]
164s Computing hash join...  [0s]
164s Masking low complexity seeds...  [0s]
164s Searching alignments...  [0.004s]
164s Deallocating memory...  [0s]
164s Processing query block 1, reference block 1/1, shape 11/16, index chunk 1/4.
164s Building reference seed array...  [0.001s]
164s Building query seed array...  [0.001s]
164s Computing hash join...  [0s]
164s Masking low complexity seeds...  [0s]
164s Searching alignments...  [0.005s]
164s Deallocating memory...  [0s]
164s Processing query block 1, reference block 1/1, shape 11/16, index chunk 2/4.
164s Building reference seed array...  [0.001s]
164s Building query seed array...  [0.001s]
164s Computing hash join...  [0s]
164s Masking low complexity seeds...  [0s]
164s Searching alignments...  [0.005s]
164s Deallocating memory...  [0s]
164s Processing query block 1, reference block 1/1, shape 11/16, index chunk 3/4.
164s Building reference seed array...  [0.001s]
164s Building query seed array...  [0.001s]
164s Computing hash join...  [0s]
164s Masking low complexity seeds...  [0s]
164s Searching alignments...  [0.005s]
164s Deallocating memory...  [0s]
164s Processing query block 1, reference block 1/1, shape 11/16, index chunk 4/4.
164s Building reference seed array...  [0.001s]
164s Building query seed array...  [0.001s]
164s Computing hash join...  [0s]
164s Masking low complexity seeds...  [0s]
164s Searching alignments...  [0.004s]
164s Deallocating memory...  [0s]
164s Processing query block 1, reference block 1/1, shape 12/16, index chunk 1/4.
164s Building reference seed array...  [0.001s]
164s Building query seed array...  [0.001s]
164s Computing hash join...  [0s]
164s Masking low complexity seeds...  [0s]
164s Searching alignments...  [0.004s]
164s Deallocating memory...  [0s]
164s Processing query block 1, reference block 1/1, shape 12/16, index chunk 2/4.
164s Building reference seed array...  [0.001s]
164s Building query seed array...  [0.001s]
164s Computing hash join...  [0s]
164s Masking low complexity seeds...  [0s]
164s Searching alignments...  [0.004s]
164s Deallocating memory...  [0s]
164s Processing query block 1, reference block 1/1, shape 12/16, index chunk 3/4.
164s Building reference seed array...  [0.001s]
164s Building query seed array...  [0.001s]
164s Computing hash join...  [0s]
164s Masking low complexity seeds...  [0s]
164s Searching alignments...  [0.004s]
164s Deallocating memory...  [0s]
164s Processing query block 1, reference block 1/1, shape 12/16, index chunk 4/4.
164s Building reference seed array...  [0.001s]
164s Building query seed array...  [0.001s]
164s Computing hash join...  [0s]
164s Masking low complexity seeds...  [0s]
164s Searching alignments...  [0.004s]
164s Deallocating memory...  [0s]
164s Processing query block 1, reference block 1/1, shape 13/16, index chunk 1/4.
164s Building reference seed array...  [0.001s]
164s Building query seed array...  [0.001s]
164s Computing hash join...  [0s]
164s Masking low complexity seeds...  [0s]
164s Searching alignments...  [0.004s]
164s Deallocating memory...  [0s]
164s Processing query block 1, reference block 1/1, shape 13/16, index chunk 2/4.
164s Building reference seed array...  [0.001s]
164s Building query seed array...  [0.001s]
164s Computing hash join...  [0s]
164s Masking low complexity seeds...  [0s]
164s Searching alignments...  [0.004s]
164s Deallocating memory...  [0s]
164s Processing query block 1, reference block 1/1, shape 13/16, index chunk 3/4.
164s Building reference seed array...  [0.001s]
164s Building query seed array...  [0.001s]
164s Computing hash join...  [0s]
164s Masking low complexity seeds...  [0s]
164s Searching alignments...  [0.004s]
164s Deallocating memory...  [0s]
164s Processing query block 1, reference block 1/1, shape 13/16, index chunk 4/4.
164s Building reference seed array...  [0.001s]
164s Building query seed array...  [0.001s]
164s Computing hash join...  [0s]
164s Masking low complexity seeds...  [0s]
164s Searching alignments...  [0.005s]
164s Deallocating memory...  [0s]
164s Processing query block 1, reference block 1/1, shape 14/16, index chunk 1/4.
164s Building reference seed array...  [0.001s]
164s Building query seed array...  [0.001s]
164s Computing hash join...  [0s]
164s Masking low complexity seeds...  [0s]
164s Searching alignments...  [0.004s]
164s Deallocating memory...  [0s]
164s Processing query block 1, reference block 1/1, shape 14/16, index chunk 2/4.
164s Building reference seed array...  [0.001s]
164s Building query seed array...  [0.001s]
164s Computing hash join...  [0s]
164s Masking low complexity seeds...  [0s]
164s Searching alignments...  [0.004s]
164s Deallocating memory...  [0s]
164s Processing query block 1, reference block 1/1, shape 14/16, index chunk 3/4.
164s Building reference seed array...  [0.001s]
164s Building query seed array...  [0.001s]
164s Computing hash join...  [0s]
164s Masking low complexity seeds...  [0s]
164s Searching alignments...  [0.005s]
164s Deallocating memory...  [0s]
164s Processing query block 1, reference block 1/1, shape 14/16, index chunk 4/4.
164s Building reference seed array...  [0.001s]
164s Building query seed array...  [0.001s]
164s Computing hash join...  [0s]
164s Masking low complexity seeds...  [0s]
164s Searching alignments...  [0.005s]
164s Deallocating memory...  [0s]
164s Processing query block 1, reference block 1/1, shape 15/16, index chunk 1/4.
164s Building reference seed array...  [0.001s]
164s Building query seed array...  [0.001s]
164s Computing hash join...  [0s]
164s Masking low complexity seeds...  [0s]
164s Searching alignments...  [0.005s]
164s Deallocating memory...  [0s]
164s Processing query block 1, reference block 1/1, shape 15/16, index chunk 2/4.
164s Building reference seed array...  [0.001s]
164s Building query seed array...  [0.001s]
164s Computing hash join...  [0s]
164s Masking low complexity seeds...  [0s]
164s Searching alignments...  [0.005s]
164s Deallocating memory...  [0s]
164s Processing query block 1, reference block 1/1, shape 15/16, index chunk 3/4.
164s Building reference seed array...  [0.001s]
164s Building query seed array...  [0.001s]
164s Computing hash join...  [0s]
164s Masking low complexity seeds...  [0s]
164s Searching alignments...  [0.005s]
164s Deallocating memory...  [0s]
164s Processing query block 1, reference block 1/1, shape 15/16, index chunk 4/4.
164s Building reference seed array...  [0.001s]
164s Building query seed array...  [0.001s]
164s Computing hash join...  [0s]
164s Masking low complexity seeds...  [0s]
164s Searching alignments...  [0.004s]
164s Deallocating memory...  [0s]
164s Processing query block 1, reference block 1/1, shape 16/16, index chunk 1/4.
164s Building reference seed array...  [0.001s]
164s Building query seed array...  [0.001s]
164s Computing hash join...  [0s]
164s Masking low complexity seeds...  [0s]
164s Searching alignments...  [0.005s]
164s Deallocating memory...  [0s]
164s Processing query block 1, reference block 1/1, shape 16/16, index chunk 2/4.
164s Building reference seed array...  [0.001s]
164s Building query seed array...  [0.001s]
164s Computing hash join...  [0s]
164s Masking low complexity seeds...  [0s]
164s Searching alignments...  [0.004s]
164s Deallocating memory...  [0s]
164s Processing query block 1, reference block 1/1, shape 16/16, index chunk 3/4.
164s Building reference seed array...  [0.001s]
164s Building query seed array...  [0.001s]
164s Computing hash join...  [0s]
164s Masking low complexity seeds...  [0s]
164s Searching alignments...  [0.004s]
164s Deallocating memory...  [0s]
164s Processing query block 1, reference block 1/1, shape 16/16, index chunk 4/4.
164s Building reference seed array...  [0.001s]
164s Building query seed array...  [0.001s]
164s Computing hash join...  [0s]
164s Masking low complexity seeds...  [0s]
164s Searching alignments...  [0.005s]
164s Deallocating memory...  [0s]
164s Deallocating buffers...  [0s]
164s Clearing query masking...  [0s]
164s Computing alignments... Loading trace points...  [0.001s]
164s Sorting trace points...  [0s]
165s Computing alignments...  [0.625s]
165s Deallocating buffers...  [0s]
165s Loading trace points...  [0s]
165s  [0.628s]
165s Deallocating reference...  [0s]
165s Loading reference sequences...  [0s]
165s Deallocating buffers...  [0s]
165s Deallocating queries...  [0s]
165s Loading query sequences...  [0s]
165s Closing the input file...  [0s]
165s Closing the output file...  [0s]
165s Closing the database...  [0s]
165s Cleaning up...  [0s]
165s Total time = 1.287s
165s Reported 390 pairwise alignments, 390 HSPs.
165s 40 queries aligned.
165s + diamond blastp --ignore-warnings --threads 1 --db test/L.faa.diamond --query test/C2.faa --out /tmp/tmp.gdxNHDneSh/C2.faa.vs.L.faa.diamond -e 1e-05 --outfmt 6 --sensitive
165s diamond v2.1.9.163 (C) Max Planck Society for the Advancement of Science, Benjamin Buchfink, University of Tuebingen
165s Documentation, support and updates available at http://www.diamondsearch.org
165s Please cite: http://dx.doi.org/10.1038/s41592-021-01101-x Nature Methods (2021)
165s 
165s #CPU threads: 1
165s Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1)
165s Temporary directory: /tmp/tmp.gdxNHDneSh
165s #Target sequences to report alignments for: 25
165s Opening the database...  [0s]
165s Database: test/L.faa.diamond (type: Diamond database, sequences: 40, letters: 26652)
165s Block size = 2000000000
165s Opening the input file...  [0s]
165s Opening the output file...  [0s]
165s Loading query sequences...  [0s]
165s Masking queries...  [0s]
165s Algorithm: Double-indexed
165s Building query histograms...  [0s]
165s Seeking in database...  [0s]
165s Loading reference sequences...  [0s]
165s Masking reference...  [0.005s]
165s Initializing temporary storage...  [0s]
165s Building reference histograms...  [0.006s]
165s Allocating buffers...  [0s]
165s Processing query block 1, reference block 1/1, shape 1/16, index chunk 1/4.
165s Building reference seed array...  [0.001s]
165s Building query seed array...  [0s]
165s Computing hash join...  [0s]
165s Masking low complexity seeds...  [0s]
165s Searching alignments...  [0s]
165s Deallocating memory...  [0s]
165s Processing query block 1, reference block 1/1, shape 1/16, index chunk 2/4.
165s Building reference seed array...  [0.001s]
165s Building query seed array...  [0s]
165s Computing hash join...  [0s]
165s Masking low complexity seeds...  [0s]
165s Searching alignments...  [0s]
165s Deallocating memory...  [0s]
165s Processing query block 1, reference block 1/1, shape 1/16, index chunk 3/4.
165s Building reference seed array...  [0.001s]
165s Building query seed array...  [0s]
165s Computing hash join...  [0s]
165s Masking low complexity seeds...  [0s]
165s Searching alignments...  [0s]
165s Deallocating memory...  [0s]
165s Processing query block 1, reference block 1/1, shape 1/16, index chunk 4/4.
165s Building reference seed array...  [0.001s]
165s Building query seed array...  [0s]
165s Computing hash join...  [0s]
165s Masking low complexity seeds...  [0s]
165s Searching alignments...  [0s]
165s Deallocating memory...  [0s]
165s Processing query block 1, reference block 1/1, shape 2/16, index chunk 1/4.
165s Building reference seed array...  [0.001s]
165s Building query seed array...  [0s]
165s Computing hash join...  [0s]
165s Masking low complexity seeds...  [0s]
165s Searching alignments...  [0s]
165s Deallocating memory...  [0s]
165s Processing query block 1, reference block 1/1, shape 2/16, index chunk 2/4.
165s Building reference seed array...  [0.001s]
165s Building query seed array...  [0s]
165s Computing hash join...  [0s]
165s Masking low complexity seeds...  [0s]
165s Searching alignments...  [0s]
165s Deallocating memory...  [0s]
165s Processing query block 1, reference block 1/1, shape 2/16, index chunk 3/4.
165s Building reference seed array...  [0.001s]
165s Building query seed array...  [0s]
165s Computing hash join...  [0s]
165s Masking low complexity seeds...  [0s]
165s Searching alignments...  [0s]
165s Deallocating memory...  [0s]
165s Processing query block 1, reference block 1/1, shape 2/16, index chunk 4/4.
165s Building reference seed array...  [0.001s]
165s Building query seed array...  [0s]
165s Computing hash join...  [0s]
165s Masking low complexity seeds...  [0s]
165s Searching alignments...  [0s]
165s Deallocating memory...  [0s]
165s Processing query block 1, reference block 1/1, shape 3/16, index chunk 1/4.
165s Building reference seed array...  [0.001s]
165s Building query seed array...  [0s]
165s Computing hash join...  [0s]
165s Masking low complexity seeds...  [0s]
165s Searching alignments...  [0s]
165s Deallocating memory...  [0s]
165s Processing query block 1, reference block 1/1, shape 3/16, index chunk 2/4.
165s Building reference seed array...  [0.001s]
165s Building query seed array...  [0s]
165s Computing hash join...  [0s]
165s Masking low complexity seeds...  [0s]
165s Searching alignments...  [0s]
165s Deallocating memory...  [0s]
165s Processing query block 1, reference block 1/1, shape 3/16, index chunk 3/4.
165s Building reference seed array...  [0.001s]
165s Building query seed array...  [0s]
165s Computing hash join...  [0s]
165s Masking low complexity seeds...  [0s]
165s Searching alignments...  [0s]
165s Deallocating memory...  [0s]
165s Processing query block 1, reference block 1/1, shape 3/16, index chunk 4/4.
165s Building reference seed array...  [0.001s]
165s Building query seed array...  [0s]
165s Computing hash join...  [0s]
165s Masking low complexity seeds...  [0s]
165s Searching alignments...  [0s]
165s Deallocating memory...  [0s]
165s Processing query block 1, reference block 1/1, shape 4/16, index chunk 1/4.
165s Building reference seed array...  [0.002s]
165s Building query seed array...  [0s]
165s Computing hash join...  [0s]
165s Masking low complexity seeds...  [0s]
165s Searching alignments...  [0s]
165s Deallocating memory...  [0s]
165s Processing query block 1, reference block 1/1, shape 4/16, index chunk 2/4.
165s Building reference seed array...  [0.001s]
165s Building query seed array...  [0s]
165s Computing hash join...  [0s]
165s Masking low complexity seeds...  [0s]
165s Searching alignments...  [0s]
165s Deallocating memory...  [0s]
165s Processing query block 1, reference block 1/1, shape 4/16, index chunk 3/4.
165s Building reference seed array...  [0.001s]
165s Building query seed array...  [0s]
165s Computing hash join...  [0s]
165s Masking low complexity seeds...  [0s]
165s Searching alignments...  [0s]
165s Deallocating memory...  [0s]
165s Processing query block 1, reference block 1/1, shape 4/16, index chunk 4/4.
165s Building reference seed array...  [0.001s]
165s Building query seed array...  [0s]
165s Computing hash join...  [0s]
165s Masking low complexity seeds...  [0s]
165s Searching alignments...  [0s]
165s Deallocating memory...  [0s]
165s Processing query block 1, reference block 1/1, shape 5/16, index chunk 1/4.
165s Building reference seed array...  [0.001s]
165s Building query seed array...  [0s]
165s Computing hash join...  [0s]
165s Masking low complexity seeds...  [0s]
165s Searching alignments...  [0s]
165s Deallocating memory...  [0s]
165s Processing query block 1, reference block 1/1, shape 5/16, index chunk 2/4.
165s Building reference seed array...  [0.001s]
165s Building query seed array...  [0s]
165s Computing hash join...  [0s]
165s Masking low complexity seeds...  [0s]
165s Searching alignments...  [0s]
165s Deallocating memory...  [0s]
165s Processing query block 1, reference block 1/1, shape 5/16, index chunk 3/4.
165s Building reference seed array...  [0.001s]
165s Building query seed array...  [0s]
165s Computing hash join...  [0s]
165s Masking low complexity seeds...  [0s]
165s Searching alignments...  [0s]
165s Deallocating memory...  [0s]
165s Processing query block 1, reference block 1/1, shape 5/16, index chunk 4/4.
165s Building reference seed array...  [0.001s]
165s Building query seed array...  [0s]
165s Computing hash join...  [0s]
165s Masking low complexity seeds...  [0s]
165s Searching alignments...  [0s]
165s Deallocating memory...  [0s]
165s Processing query block 1, reference block 1/1, shape 6/16, index chunk 1/4.
165s Building reference seed array...  [0.001s]
165s Building query seed array...  [0s]
165s Computing hash join...  [0s]
165s Masking low complexity seeds...  [0s]
165s Searching alignments...  [0s]
165s Deallocating memory...  [0s]
165s Processing query block 1, reference block 1/1, shape 6/16, index chunk 2/4.
165s Building reference seed array...  [0.002s]
165s Building query seed array...  [0s]
165s Computing hash join...  [0s]
165s Masking low complexity seeds...  [0s]
165s Searching alignments...  [0s]
165s Deallocating memory...  [0s]
165s Processing query block 1, reference block 1/1, shape 6/16, index chunk 3/4.
165s Building reference seed array...  [0.001s]
165s Building query seed array...  [0s]
165s Computing hash join...  [0s]
165s Masking low complexity seeds...  [0s]
165s Searching alignments...  [0s]
165s Deallocating memory...  [0s]
165s Processing query block 1, reference block 1/1, shape 6/16, index chunk 4/4.
165s Building reference seed array...  [0.001s]
165s Building query seed array...  [0s]
165s Computing hash join...  [0s]
165s Masking low complexity seeds...  [0s]
165s Searching alignments...  [0s]
165s Deallocating memory...  [0s]
165s Processing query block 1, reference block 1/1, shape 7/16, index chunk 1/4.
165s Building reference seed array...  [0.001s]
165s Building query seed array...  [0s]
165s Computing hash join...  [0s]
165s Masking low complexity seeds...  [0s]
165s Searching alignments...  [0s]
165s Deallocating memory...  [0s]
165s Processing query block 1, reference block 1/1, shape 7/16, index chunk 2/4.
165s Building reference seed array...  [0.001s]
165s Building query seed array...  [0s]
165s Computing hash join...  [0s]
165s Masking low complexity seeds...  [0s]
165s Searching alignments...  [0s]
165s Deallocating memory...  [0s]
165s Processing query block 1, reference block 1/1, shape 7/16, index chunk 3/4.
165s Building reference seed array...  [0.001s]
165s Building query seed array...  [0s]
165s Computing hash join...  [0s]
165s Masking low complexity seeds...  [0s]
165s Searching alignments...  [0s]
165s Deallocating memory...  [0s]
165s Processing query block 1, reference block 1/1, shape 7/16, index chunk 4/4.
165s Building reference seed array...  [0.001s]
165s Building query seed array...  [0s]
165s Computing hash join...  [0s]
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165s Searching alignments...  [0s]
165s Deallocating memory...  [0s]
165s Processing query block 1, reference block 1/1, shape 8/16, index chunk 1/4.
165s Building reference seed array...  [0.001s]
165s Building query seed array...  [0s]
165s Computing hash join...  [0s]
165s Masking low complexity seeds...  [0s]
165s Searching alignments...  [0s]
165s Deallocating memory...  [0s]
165s Processing query block 1, reference block 1/1, shape 8/16, index chunk 2/4.
165s Building reference seed array...  [0.001s]
165s Building query seed array...  [0s]
165s Computing hash join...  [0s]
165s Masking low complexity seeds...  [0s]
165s Searching alignments...  [0s]
165s Deallocating memory...  [0s]
165s Processing query block 1, reference block 1/1, shape 8/16, index chunk 3/4.
165s Building reference seed array...  [0.001s]
165s Building query seed array...  [0s]
165s Computing hash join...  [0s]
165s Masking low complexity seeds...  [0s]
165s Searching alignments...  [0s]
165s Deallocating memory...  [0s]
165s Processing query block 1, reference block 1/1, shape 8/16, index chunk 4/4.
165s Building reference seed array...  [0.001s]
165s Building query seed array...  [0s]
165s Computing hash join...  [0s]
165s Masking low complexity seeds...  [0s]
165s Searching alignments...  [0s]
165s Deallocating memory...  [0s]
165s Processing query block 1, reference block 1/1, shape 9/16, index chunk 1/4.
165s Building reference seed array...  [0.001s]
165s Building query seed array...  [0s]
165s Computing hash join...  [0s]
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165s Searching alignments...  [0s]
165s Deallocating memory...  [0s]
165s Processing query block 1, reference block 1/1, shape 9/16, index chunk 2/4.
165s Building reference seed array...  [0.001s]
165s Building query seed array...  [0s]
165s Computing hash join...  [0s]
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165s Searching alignments...  [0s]
165s Deallocating memory...  [0s]
165s Processing query block 1, reference block 1/1, shape 9/16, index chunk 3/4.
165s Building reference seed array...  [0.001s]
165s Building query seed array...  [0s]
165s Computing hash join...  [0s]
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165s Searching alignments...  [0s]
165s Deallocating memory...  [0s]
165s Processing query block 1, reference block 1/1, shape 9/16, index chunk 4/4.
165s Building reference seed array...  [0.001s]
165s Building query seed array...  [0s]
165s Computing hash join...  [0s]
165s Masking low complexity seeds...  [0s]
165s Searching alignments...  [0s]
165s Deallocating memory...  [0s]
165s Processing query block 1, reference block 1/1, shape 10/16, index chunk 1/4.
165s Building reference seed array...  [0.001s]
165s Building query seed array...  [0s]
165s Computing hash join...  [0s]
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165s Searching alignments...  [0s]
165s Deallocating memory...  [0s]
165s Processing query block 1, reference block 1/1, shape 10/16, index chunk 2/4.
165s Building reference seed array...  [0.001s]
165s Building query seed array...  [0s]
165s Computing hash join...  [0s]
165s Masking low complexity seeds...  [0s]
165s Searching alignments...  [0s]
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165s Processing query block 1, reference block 1/1, shape 10/16, index chunk 3/4.
165s Building reference seed array...  [0.001s]
165s Building query seed array...  [0s]
165s Computing hash join...  [0s]
165s Masking low complexity seeds...  [0s]
165s Searching alignments...  [0s]
165s Deallocating memory...  [0s]
165s Processing query block 1, reference block 1/1, shape 10/16, index chunk 4/4.
165s Building reference seed array...  [0.001s]
165s Building query seed array...  [0s]
165s Computing hash join...  [0s]
165s Masking low complexity seeds...  [0s]
165s Searching alignments...  [0s]
165s Deallocating memory...  [0s]
165s Processing query block 1, reference block 1/1, shape 11/16, index chunk 1/4.
165s Building reference seed array...  [0.001s]
165s Building query seed array...  [0s]
165s Computing hash join...  [0s]
165s Masking low complexity seeds...  [0s]
165s Searching alignments...  [0s]
165s Deallocating memory...  [0s]
165s Processing query block 1, reference block 1/1, shape 11/16, index chunk 2/4.
165s Building reference seed array...  [0.001s]
165s Building query seed array...  [0s]
165s Computing hash join...  [0s]
165s Masking low complexity seeds...  [0s]
165s Searching alignments...  [0s]
165s Deallocating memory...  [0s]
165s Processing query block 1, reference block 1/1, shape 11/16, index chunk 3/4.
165s Building reference seed array...  [0.001s]
165s Building query seed array...  [0s]
165s Computing hash join...  [0s]
165s Masking low complexity seeds...  [0s]
165s Searching alignments...  [0s]
165s Deallocating memory...  [0s]
165s Processing query block 1, reference block 1/1, shape 11/16, index chunk 4/4.
165s Building reference seed array...  [0.001s]
165s Building query seed array...  [0s]
165s Computing hash join...  [0s]
165s Masking low complexity seeds...  [0s]
165s Searching alignments...  [0s]
165s Deallocating memory...  [0s]
165s Processing query block 1, reference block 1/1, shape 12/16, index chunk 1/4.
165s Building reference seed array...  [0.001s]
165s Building query seed array...  [0s]
165s Computing hash join...  [0s]
165s Masking low complexity seeds...  [0s]
165s Searching alignments...  [0s]
165s Deallocating memory...  [0s]
165s Processing query block 1, reference block 1/1, shape 12/16, index chunk 2/4.
165s Building reference seed array...  [0.001s]
165s Building query seed array...  [0s]
165s Computing hash join...  [0s]
165s Masking low complexity seeds...  [0s]
165s Searching alignments...  [0s]
165s Deallocating memory...  [0s]
165s Processing query block 1, reference block 1/1, shape 12/16, index chunk 3/4.
165s Building reference seed array...  [0.001s]
165s Building query seed array...  [0s]
165s Computing hash join...  [0s]
165s Masking low complexity seeds...  [0s]
165s Searching alignments...  [0s]
165s Deallocating memory...  [0s]
165s Processing query block 1, reference block 1/1, shape 12/16, index chunk 4/4.
165s Building reference seed array...  [0.001s]
165s Building query seed array...  [0s]
165s Computing hash join...  [0s]
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165s Searching alignments...  [0s]
165s Deallocating memory...  [0s]
165s Processing query block 1, reference block 1/1, shape 13/16, index chunk 1/4.
165s Building reference seed array...  [0.001s]
165s Building query seed array...  [0s]
165s Computing hash join...  [0s]
165s Masking low complexity seeds...  [0s]
165s Searching alignments...  [0s]
165s Deallocating memory...  [0s]
165s Processing query block 1, reference block 1/1, shape 13/16, index chunk 2/4.
165s Building reference seed array...  [0.001s]
165s Building query seed array...  [0s]
165s Computing hash join...  [0s]
165s Masking low complexity seeds...  [0s]
165s Searching alignments...  [0s]
165s Deallocating memory...  [0s]
165s Processing query block 1, reference block 1/1, shape 13/16, index chunk 3/4.
165s Building reference seed array...  [0.001s]
165s Building query seed array...  [0s]
165s Computing hash join...  [0s]
165s Masking low complexity seeds...  [0s]
165s Searching alignments...  [0s]
165s Deallocating memory...  [0s]
165s Processing query block 1, reference block 1/1, shape 13/16, index chunk 4/4.
165s Building reference seed array...  [0.001s]
165s Building query seed array...  [0s]
165s Computing hash join...  [0s]
165s Masking low complexity seeds...  [0s]
165s Searching alignments...  [0s]
165s Deallocating memory...  [0s]
165s Processing query block 1, reference block 1/1, shape 14/16, index chunk 1/4.
165s Building reference seed array...  [0.001s]
165s Building query seed array...  [0s]
165s Computing hash join...  [0s]
165s Masking low complexity seeds...  [0s]
165s Searching alignments...  [0s]
165s Deallocating memory...  [0s]
165s Processing query block 1, reference block 1/1, shape 14/16, index chunk 2/4.
165s Building reference seed array...  [0.001s]
165s Building query seed array...  [0s]
165s Computing hash join...  [0s]
165s Masking low complexity seeds...  [0s]
165s Searching alignments...  [0s]
165s Deallocating memory...  [0s]
165s Processing query block 1, reference block 1/1, shape 14/16, index chunk 3/4.
165s Building reference seed array...  [0.001s]
165s Building query seed array...  [0s]
165s Computing hash join...  [0s]
165s Masking low complexity seeds...  [0s]
165s Searching alignments...  [0s]
165s Deallocating memory...  [0s]
165s Processing query block 1, reference block 1/1, shape 14/16, index chunk 4/4.
165s Building reference seed array...  [0.001s]
165s Building query seed array...  [0s]
165s Computing hash join...  [0s]
165s Masking low complexity seeds...  [0s]
165s Searching alignments...  [0s]
165s Deallocating memory...  [0s]
165s Processing query block 1, reference block 1/1, shape 15/16, index chunk 1/4.
165s Building reference seed array...  [0.001s]
165s Building query seed array...  [0s]
165s Computing hash join...  [0s]
165s Masking low complexity seeds...  [0s]
165s Searching alignments...  [0s]
165s Deallocating memory...  [0s]
165s Processing query block 1, reference block 1/1, shape 15/16, index chunk 2/4.
165s Building reference seed array...  [0.001s]
165s Building query seed array...  [0s]
165s Computing hash join...  [0s]
165s Masking low complexity seeds...  [0s]
165s Searching alignments...  [0s]
165s Deallocating memory...  [0s]
165s Processing query block 1, reference block 1/1, shape 15/16, index chunk 3/4.
165s Building reference seed array...  [0.001s]
165s Building query seed array...  [0s]
165s Computing hash join...  [0s]
165s Masking low complexity seeds...  [0s]
165s Searching alignments...  [0s]
165s Deallocating memory...  [0s]
165s Processing query block 1, reference block 1/1, shape 15/16, index chunk 4/4.
165s Building reference seed array...  [0.001s]
165s Building query seed array...  [0s]
165s Computing hash join...  [0s]
165s Masking low complexity seeds...  [0s]
165s Searching alignments...  [0s]
165s Deallocating memory...  [0s]
165s Processing query block 1, reference block 1/1, shape 16/16, index chunk 1/4.
165s Building reference seed array...  [0.001s]
165s Building query seed array...  [0s]
165s Computing hash join...  [0s]
165s Masking low complexity seeds...  [0s]
165s Searching alignments...  [0s]
165s Deallocating memory...  [0s]
165s Processing query block 1, reference block 1/1, shape 16/16, index chunk 2/4.
165s Building reference seed array...  [0.001s]
165s Building query seed array...  [0s]
165s Computing hash join...  [0s]
165s Masking low complexity seeds...  [0s]
165s Searching alignments...  [0s]
165s Deallocating memory...  [0s]
165s Processing query block 1, reference block 1/1, shape 16/16, index chunk 3/4.
165s Building reference seed array...  [0.001s]
165s Building query seed array...  [0s]
165s Computing hash join...  [0s]
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165s Searching alignments...  [0s]
165s Deallocating memory...  [0s]
165s Processing query block 1, reference block 1/1, shape 16/16, index chunk 4/4.
165s Building reference seed array...  [0.001s]
165s Building query seed array...  [0s]
165s Computing hash join...  [0s]
165s Masking low complexity seeds...  [0s]
165s Searching alignments...  [0s]
165s Deallocating memory...  [0s]
165s Deallocating buffers...  [0s]
165s Clearing query masking...  [0s]
165s Computing alignments... Loading trace points...  [0s]
165s Sorting trace points...  [0s]
165s Computing alignments...  [0.001s]
165s Deallocating buffers...  [0s]
165s Loading trace points...  [0s]
165s  [0.002s]
165s Deallocating reference...  [0s]
165s Loading reference sequences...  [0s]
165s Deallocating buffers...  [0s]
165s Deallocating queries...  [0s]
165s Loading query sequences...  [0s]
165s Closing the input file...  [0s]
165s Closing the output file...  [0s]
165s Closing the database...  [0s]
165s Cleaning up...  [0s]
165s Total time = 0.234s
165s Reported 1 pairwise alignments, 1 HSPs.
165s 1 queries aligned.
165s + diamond blastp --threads 1 --db test/C2.faa.diamond --query test/L.faa --out /tmp/tmp.gdxNHDneSh/L.faa.vs.C2.faa.diamond -e 1e-05 --outfmt 6 --sensitive
165s diamond v2.1.9.163 (C) Max Planck Society for the Advancement of Science, Benjamin Buchfink, University of Tuebingen
165s Documentation, support and updates available at http://www.diamondsearch.org
165s Please cite: http://dx.doi.org/10.1038/s41592-021-01101-x Nature Methods (2021)
165s 
165s #CPU threads: 1
165s Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1)
165s Temporary directory: /tmp/tmp.gdxNHDneSh
165s #Target sequences to report alignments for: 25
165s Opening the database...  [0s]
165s Database: test/C2.faa.diamond (type: Diamond database, sequences: 2, letters: 726)
165s Block size = 2000000000
165s Opening the input file...  [0s]
165s Opening the output file...  [0s]
165s Loading query sequences...  [0s]
165s Masking queries...  [0.008s]
165s Algorithm: Double-indexed
165s Building query histograms...  [0.006s]
165s Seeking in database...  [0s]
165s Loading reference sequences...  [0s]
165s Masking reference...  [0s]
165s Initializing temporary storage...  [0s]
165s Building reference histograms...  [0s]
165s Allocating buffers...  [0s]
165s Processing query block 1, reference block 1/1, shape 1/16, index chunk 1/4.
165s Building reference seed array...  [0s]
165s Building query seed array...  [0.001s]
165s Computing hash join...  [0s]
165s Masking low complexity seeds...  [0s]
165s Searching alignments...  [0s]
165s Deallocating memory...  [0s]
165s Processing query block 1, reference block 1/1, shape 1/16, index chunk 2/4.
165s Building reference seed array...  [0s]
165s Building query seed array...  [0.001s]
165s Computing hash join...  [0s]
165s Masking low complexity seeds...  [0s]
165s Searching alignments...  [0s]
165s Deallocating memory...  [0s]
165s Processing query block 1, reference block 1/1, shape 1/16, index chunk 3/4.
165s Building reference seed array...  [0s]
165s Building query seed array...  [0.001s]
165s Computing hash join...  [0s]
165s Masking low complexity seeds...  [0s]
165s Searching alignments...  [0s]
165s Deallocating memory...  [0s]
165s Processing query block 1, reference block 1/1, shape 1/16, index chunk 4/4.
165s Building reference seed array...  [0s]
165s Building query seed array...  [0.001s]
165s Computing hash join...  [0s]
165s Masking low complexity seeds...  [0s]
165s Searching alignments...  [0s]
165s Deallocating memory...  [0s]
165s Processing query block 1, reference block 1/1, shape 2/16, index chunk 1/4.
165s Building reference seed array...  [0s]
165s Building query seed array...  [0.001s]
165s Computing hash join...  [0s]
165s Masking low complexity seeds...  [0s]
165s Searching alignments...  [0s]
165s Deallocating memory...  [0s]
165s Processing query block 1, reference block 1/1, shape 2/16, index chunk 2/4.
165s Building reference seed array...  [0s]
165s Building query seed array...  [0.001s]
165s Computing hash join...  [0s]
165s Masking low complexity seeds...  [0s]
165s Searching alignments...  [0s]
165s Deallocating memory...  [0s]
165s Processing query block 1, reference block 1/1, shape 2/16, index chunk 3/4.
165s Building reference seed array...  [0s]
165s Building query seed array...  [0.001s]
165s Computing hash join...  [0s]
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165s Searching alignments...  [0s]
165s Deallocating memory...  [0s]
165s Processing query block 1, reference block 1/1, shape 2/16, index chunk 4/4.
165s Building reference seed array...  [0s]
165s Building query seed array...  [0.001s]
165s Computing hash join...  [0s]
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165s Searching alignments...  [0s]
165s Deallocating memory...  [0s]
165s Processing query block 1, reference block 1/1, shape 3/16, index chunk 1/4.
165s Building reference seed array...  [0s]
165s Building query seed array...  [0.001s]
165s Computing hash join...  [0s]
165s Masking low complexity seeds...  [0s]
165s Searching alignments...  [0s]
165s Deallocating memory...  [0s]
165s Processing query block 1, reference block 1/1, shape 3/16, index chunk 2/4.
165s Building reference seed array...  [0s]
165s Building query seed array...  [0.001s]
165s Computing hash join...  [0s]
165s Masking low complexity seeds...  [0s]
165s Searching alignments...  [0s]
165s Deallocating memory...  [0s]
165s Processing query block 1, reference block 1/1, shape 3/16, index chunk 3/4.
165s Building reference seed array...  [0s]
165s Building query seed array...  [0.001s]
165s Computing hash join...  [0s]
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165s Searching alignments...  [0s]
165s Deallocating memory...  [0s]
165s Processing query block 1, reference block 1/1, shape 3/16, index chunk 4/4.
165s Building reference seed array...  [0s]
165s Building query seed array...  [0.001s]
165s Computing hash join...  [0s]
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165s Searching alignments...  [0s]
165s Deallocating memory...  [0s]
165s Processing query block 1, reference block 1/1, shape 4/16, index chunk 1/4.
165s Building reference seed array...  [0s]
165s Building query seed array...  [0.001s]
165s Computing hash join...  [0s]
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165s Searching alignments...  [0s]
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165s Processing query block 1, reference block 1/1, shape 4/16, index chunk 2/4.
165s Building reference seed array...  [0s]
165s Building query seed array...  [0.001s]
165s Computing hash join...  [0s]
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165s Searching alignments...  [0s]
165s Deallocating memory...  [0s]
165s Processing query block 1, reference block 1/1, shape 4/16, index chunk 3/4.
165s Building reference seed array...  [0s]
165s Building query seed array...  [0.001s]
165s Computing hash join...  [0s]
165s Masking low complexity seeds...  [0s]
165s Searching alignments...  [0s]
165s Deallocating memory...  [0s]
165s Processing query block 1, reference block 1/1, shape 4/16, index chunk 4/4.
165s Building reference seed array...  [0s]
165s Building query seed array...  [0.001s]
165s Computing hash join...  [0s]
165s Masking low complexity seeds...  [0s]
165s Searching alignments...  [0s]
165s Deallocating memory...  [0s]
165s Processing query block 1, reference block 1/1, shape 5/16, index chunk 1/4.
165s Building reference seed array...  [0s]
165s Building query seed array...  [0.001s]
165s Computing hash join...  [0s]
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165s Searching alignments...  [0s]
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165s Processing query block 1, reference block 1/1, shape 5/16, index chunk 2/4.
165s Building reference seed array...  [0s]
165s Building query seed array...  [0.001s]
165s Computing hash join...  [0s]
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165s Processing query block 1, reference block 1/1, shape 5/16, index chunk 3/4.
165s Building reference seed array...  [0s]
165s Building query seed array...  [0.001s]
165s Computing hash join...  [0s]
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165s Searching alignments...  [0s]
165s Deallocating memory...  [0s]
165s Processing query block 1, reference block 1/1, shape 5/16, index chunk 4/4.
165s Building reference seed array...  [0s]
165s Building query seed array...  [0.001s]
165s Computing hash join...  [0s]
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165s Searching alignments...  [0s]
165s Deallocating memory...  [0s]
165s Processing query block 1, reference block 1/1, shape 6/16, index chunk 1/4.
165s Building reference seed array...  [0s]
165s Building query seed array...  [0.001s]
165s Computing hash join...  [0s]
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165s Searching alignments...  [0s]
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165s Processing query block 1, reference block 1/1, shape 6/16, index chunk 2/4.
165s Building reference seed array...  [0s]
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165s Computing hash join...  [0s]
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165s Searching alignments...  [0s]
165s Deallocating memory...  [0s]
165s Processing query block 1, reference block 1/1, shape 6/16, index chunk 3/4.
165s Building reference seed array...  [0s]
165s Building query seed array...  [0.001s]
165s Computing hash join...  [0s]
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165s Deallocating memory...  [0s]
165s Processing query block 1, reference block 1/1, shape 6/16, index chunk 4/4.
165s Building reference seed array...  [0s]
165s Building query seed array...  [0.001s]
165s Computing hash join...  [0s]
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165s Deallocating memory...  [0s]
165s Processing query block 1, reference block 1/1, shape 7/16, index chunk 1/4.
165s Building reference seed array...  [0s]
165s Building query seed array...  [0.001s]
165s Computing hash join...  [0s]
165s Masking low complexity seeds...  [0s]
165s Searching alignments...  [0s]
165s Deallocating memory...  [0s]
165s Processing query block 1, reference block 1/1, shape 7/16, index chunk 2/4.
165s Building reference seed array...  [0s]
165s Building query seed array...  [0.001s]
165s Computing hash join...  [0s]
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165s Searching alignments...  [0s]
165s Deallocating memory...  [0s]
165s Processing query block 1, reference block 1/1, shape 7/16, index chunk 3/4.
165s Building reference seed array...  [0s]
165s Building query seed array...  [0.001s]
165s Computing hash join...  [0s]
165s Masking low complexity seeds...  [0s]
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165s Deallocating memory...  [0s]
165s Processing query block 1, reference block 1/1, shape 7/16, index chunk 4/4.
165s Building reference seed array...  [0s]
165s Building query seed array...  [0.001s]
165s Computing hash join...  [0s]
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165s Deallocating memory...  [0s]
165s Processing query block 1, reference block 1/1, shape 8/16, index chunk 1/4.
165s Building reference seed array...  [0s]
165s Building query seed array...  [0.001s]
165s Computing hash join...  [0s]
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165s Deallocating memory...  [0s]
165s Processing query block 1, reference block 1/1, shape 8/16, index chunk 2/4.
165s Building reference seed array...  [0s]
165s Building query seed array...  [0.001s]
165s Computing hash join...  [0s]
165s Masking low complexity seeds...  [0s]
165s Searching alignments...  [0s]
165s Deallocating memory...  [0s]
165s Processing query block 1, reference block 1/1, shape 8/16, index chunk 3/4.
165s Building reference seed array...  [0s]
165s Building query seed array...  [0.001s]
165s Computing hash join...  [0s]
165s Masking low complexity seeds...  [0s]
165s Searching alignments...  [0s]
165s Deallocating memory...  [0s]
165s Processing query block 1, reference block 1/1, shape 8/16, index chunk 4/4.
165s Building reference seed array...  [0s]
165s Building query seed array...  [0.001s]
165s Computing hash join...  [0s]
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165s Searching alignments...  [0s]
165s Deallocating memory...  [0s]
165s Processing query block 1, reference block 1/1, shape 9/16, index chunk 1/4.
165s Building reference seed array...  [0s]
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165s Computing hash join...  [0s]
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165s Deallocating memory...  [0s]
165s Processing query block 1, reference block 1/1, shape 9/16, index chunk 2/4.
165s Building reference seed array...  [0s]
165s Building query seed array...  [0.001s]
165s Computing hash join...  [0s]
165s Masking low complexity seeds...  [0s]
165s Searching alignments...  [0s]
165s Deallocating memory...  [0s]
165s Processing query block 1, reference block 1/1, shape 9/16, index chunk 3/4.
165s Building reference seed array...  [0s]
165s Building query seed array...  [0.001s]
165s Computing hash join...  [0s]
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165s Searching alignments...  [0s]
165s Deallocating memory...  [0s]
165s Processing query block 1, reference block 1/1, shape 9/16, index chunk 4/4.
165s Building reference seed array...  [0s]
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165s Computing hash join...  [0s]
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165s Searching alignments...  [0s]
165s Deallocating memory...  [0s]
165s Processing query block 1, reference block 1/1, shape 10/16, index chunk 1/4.
165s Building reference seed array...  [0s]
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165s Computing hash join...  [0s]
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165s Searching alignments...  [0s]
165s Deallocating memory...  [0s]
165s Processing query block 1, reference block 1/1, shape 10/16, index chunk 2/4.
165s Building reference seed array...  [0s]
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165s Processing query block 1, reference block 1/1, shape 10/16, index chunk 3/4.
165s Building reference seed array...  [0s]
165s Building query seed array...  [0.001s]
165s Computing hash join...  [0s]
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165s Searching alignments...  [0s]
165s Deallocating memory...  [0s]
165s Processing query block 1, reference block 1/1, shape 10/16, index chunk 4/4.
165s Building reference seed array...  [0s]
165s Building query seed array...  [0.001s]
165s Computing hash join...  [0s]
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165s Searching alignments...  [0s]
165s Deallocating memory...  [0s]
165s Processing query block 1, reference block 1/1, shape 11/16, index chunk 1/4.
165s Building reference seed array...  [0s]
165s Building query seed array...  [0.001s]
165s Computing hash join...  [0s]
165s Masking low complexity seeds...  [0s]
165s Searching alignments...  [0s]
165s Deallocating memory...  [0s]
165s Processing query block 1, reference block 1/1, shape 11/16, index chunk 2/4.
165s Building reference seed array...  [0s]
165s Building query seed array...  [0.001s]
165s Computing hash join...  [0s]
165s Masking low complexity seeds...  [0s]
165s Searching alignments...  [0s]
165s Deallocating memory...  [0s]
165s Processing query block 1, reference block 1/1, shape 11/16, index chunk 3/4.
165s Building reference seed array...  [0s]
165s Building query seed array...  [0.001s]
165s Computing hash join...  [0s]
165s Masking low complexity seeds...  [0s]
165s Searching alignments...  [0s]
165s Deallocating memory...  [0s]
165s Processing query block 1, reference block 1/1, shape 11/16, index chunk 4/4.
165s Building reference seed array...  [0s]
165s Building query seed array...  [0.001s]
165s Computing hash join...  [0s]
165s Masking low complexity seeds...  [0s]
165s Searching alignments...  [0s]
165s Deallocating memory...  [0s]
165s Processing query block 1, reference block 1/1, shape 12/16, index chunk 1/4.
165s Building reference seed array...  [0s]
165s Building query seed array...  [0.001s]
165s Computing hash join...  [0s]
165s Masking low complexity seeds...  [0s]
165s Searching alignments...  [0s]
165s Deallocating memory...  [0s]
165s Processing query block 1, reference block 1/1, shape 12/16, index chunk 2/4.
165s Building reference seed array...  [0s]
165s Building query seed array...  [0.001s]
165s Computing hash join...  [0s]
165s Masking low complexity seeds...  [0s]
165s Searching alignments...  [0s]
165s Deallocating memory...  [0s]
165s Processing query block 1, reference block 1/1, shape 12/16, index chunk 3/4.
165s Building reference seed array...  [0s]
165s Building query seed array...  [0.001s]
165s Computing hash join...  [0s]
165s Masking low complexity seeds...  [0s]
165s Searching alignments...  [0s]
165s Deallocating memory...  [0s]
165s Processing query block 1, reference block 1/1, shape 12/16, index chunk 4/4.
165s Building reference seed array...  [0s]
165s Building query seed array...  [0.001s]
165s Computing hash join...  [0s]
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165s Searching alignments...  [0s]
165s Deallocating memory...  [0s]
165s Processing query block 1, reference block 1/1, shape 13/16, index chunk 1/4.
165s Building reference seed array...  [0s]
165s Building query seed array...  [0.001s]
165s Computing hash join...  [0s]
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165s Searching alignments...  [0s]
165s Deallocating memory...  [0s]
165s Processing query block 1, reference block 1/1, shape 13/16, index chunk 2/4.
165s Building reference seed array...  [0s]
165s Building query seed array...  [0.001s]
165s Computing hash join...  [0s]
165s Masking low complexity seeds...  [0s]
165s Searching alignments...  [0s]
165s Deallocating memory...  [0s]
165s Processing query block 1, reference block 1/1, shape 13/16, index chunk 3/4.
165s Building reference seed array...  [0s]
165s Building query seed array...  [0.001s]
165s Computing hash join...  [0s]
165s Masking low complexity seeds...  [0s]
165s Searching alignments...  [0s]
165s Deallocating memory...  [0s]
165s Processing query block 1, reference block 1/1, shape 13/16, index chunk 4/4.
165s Building reference seed array...  [0s]
165s Building query seed array...  [0.001s]
165s Computing hash join...  [0s]
165s Masking low complexity seeds...  [0s]
165s Searching alignments...  [0s]
165s Deallocating memory...  [0s]
165s Processing query block 1, reference block 1/1, shape 14/16, index chunk 1/4.
165s Building reference seed array...  [0s]
165s Building query seed array...  [0.001s]
165s Computing hash join...  [0s]
165s Masking low complexity seeds...  [0s]
165s Searching alignments...  [0s]
165s Deallocating memory...  [0s]
165s Processing query block 1, reference block 1/1, shape 14/16, index chunk 2/4.
165s Building reference seed array...  [0s]
165s Building query seed array...  [0.001s]
165s Computing hash join...  [0s]
165s Masking low complexity seeds...  [0s]
165s Searching alignments...  [0s]
165s Deallocating memory...  [0s]
165s Processing query block 1, reference block 1/1, shape 14/16, index chunk 3/4.
165s Building reference seed array...  [0s]
165s Building query seed array...  [0.001s]
165s Computing hash join...  [0s]
165s Masking low complexity seeds...  [0s]
165s Searching alignments...  [0s]
165s Deallocating memory...  [0s]
165s Processing query block 1, reference block 1/1, shape 14/16, index chunk 4/4.
165s Building reference seed array...  [0s]
165s Building query seed array...  [0.001s]
165s Computing hash join...  [0s]
165s Masking low complexity seeds...  [0s]
165s Searching alignments...  [0s]
165s Deallocating memory...  [0s]
165s Processing query block 1, reference block 1/1, shape 15/16, index chunk 1/4.
165s Building reference seed array...  [0s]
165s Building query seed array...  [0.001s]
165s Computing hash join...  [0s]
165s Masking low complexity seeds...  [0s]
165s Searching alignments...  [0s]
165s Deallocating memory...  [0s]
165s Processing query block 1, reference block 1/1, shape 15/16, index chunk 2/4.
165s Building reference seed array...  [0s]
165s Building query seed array...  [0.001s]
165s Computing hash join...  [0s]
165s Masking low complexity seeds...  [0s]
165s Searching alignments...  [0s]
165s Deallocating memory...  [0s]
165s Processing query block 1, reference block 1/1, shape 15/16, index chunk 3/4.
165s Building reference seed array...  [0s]
165s Building query seed array...  [0.001s]
165s Computing hash join...  [0s]
165s Masking low complexity seeds...  [0s]
165s Searching alignments...  [0s]
165s Deallocating memory...  [0s]
165s Processing query block 1, reference block 1/1, shape 15/16, index chunk 4/4.
165s Building reference seed array...  [0s]
165s Building query seed array...  [0.001s]
165s Computing hash join...  [0s]
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165s Searching alignments...  [0s]
165s Deallocating memory...  [0s]
165s Processing query block 1, reference block 1/1, shape 16/16, index chunk 1/4.
165s Building reference seed array...  [0s]
165s Building query seed array...  [0.001s]
165s Computing hash join...  [0s]
165s Masking low complexity seeds...  [0s]
165s Searching alignments...  [0s]
165s Deallocating memory...  [0s]
165s Processing query block 1, reference block 1/1, shape 16/16, index chunk 2/4.
165s Building reference seed array...  [0s]
165s Building query seed array...  [0.001s]
165s Computing hash join...  [0s]
165s Masking low complexity seeds...  [0s]
165s Searching alignments...  [0s]
165s Deallocating memory...  [0s]
165s Processing query block 1, reference block 1/1, shape 16/16, index chunk 3/4.
165s Building reference seed array...  [0s]
165s Building query seed array...  [0.001s]
165s Computing hash join...  [0s]
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165s Searching alignments...  [0s]
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165s Processing query block 1, reference block 1/1, shape 16/16, index chunk 4/4.
165s Building reference seed array...  [0s]
165s Building query seed array...  [0.001s]
165s Computing hash join...  [0s]
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165s Searching alignments...  [0s]
165s Deallocating memory...  [0s]
165s Deallocating buffers...  [0s]
165s Clearing query masking...  [0s]
165s Computing alignments... Loading trace points...  [0s]
165s Sorting trace points...  [0s]
165s Computing alignments...  [0.001s]
165s Deallocating buffers...  [0s]
165s Loading trace points...  [0s]
165s  [0.002s]
165s Deallocating reference...  [0s]
165s Loading reference sequences...  [0s]
165s Deallocating buffers...  [0s]
165s Deallocating queries...  [0s]
165s Loading query sequences...  [0s]
165s Closing the input file...  [0s]
165s Closing the output file...  [0s]
165s Closing the database...  [0s]
165s Cleaning up...  [0s]
165s Total time = 0.236s
165s Reported 1 pairwise alignments, 1 HSPs.
165s 1 queries aligned.
165s + diamond blastp --ignore-warnings --threads 1 --db test/M.faa.diamond --query test/C2.faa --out /tmp/tmp.gdxNHDneSh/C2.faa.vs.M.faa.diamond -e 1e-05 --outfmt 6 --sensitive
165s diamond v2.1.9.163 (C) Max Planck Society for the Advancement of Science, Benjamin Buchfink, University of Tuebingen
165s Documentation, support and updates available at http://www.diamondsearch.org
165s Please cite: http://dx.doi.org/10.1038/s41592-021-01101-x Nature Methods (2021)
165s 
165s #CPU threads: 1
165s Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1)
165s Temporary directory: /tmp/tmp.gdxNHDneSh
165s #Target sequences to report alignments for: 25
165s Opening the database...  [0s]
165s Database: test/M.faa.diamond (type: Diamond database, sequences: 40, letters: 26963)
165s Block size = 2000000000
165s Opening the input file...  [0s]
165s Opening the output file...  [0s]
165s Loading query sequences...  [0s]
165s Masking queries...  [0s]
165s Algorithm: Double-indexed
165s Building query histograms...  [0s]
165s Seeking in database...  [0s]
165s Loading reference sequences...  [0s]
165s Masking reference...  [0.006s]
165s Initializing temporary storage...  [0s]
165s Building reference histograms...  [0.006s]
165s Allocating buffers...  [0s]
165s Processing query block 1, reference block 1/1, shape 1/16, index chunk 1/4.
165s Building reference seed array...  [0.001s]
165s Building query seed array...  [0s]
165s Computing hash join...  [0s]
165s Masking low complexity seeds...  [0s]
165s Searching alignments...  [0s]
165s Deallocating memory...  [0s]
165s Processing query block 1, reference block 1/1, shape 1/16, index chunk 2/4.
165s Building reference seed array...  [0.001s]
165s Building query seed array...  [0s]
165s Computing hash join...  [0s]
165s Masking low complexity seeds...  [0s]
165s Searching alignments...  [0s]
165s Deallocating memory...  [0s]
165s Processing query block 1, reference block 1/1, shape 1/16, index chunk 3/4.
165s Building reference seed array...  [0.001s]
165s Building query seed array...  [0s]
165s Computing hash join...  [0s]
165s Masking low complexity seeds...  [0s]
165s Searching alignments...  [0s]
165s Deallocating memory...  [0s]
165s Processing query block 1, reference block 1/1, shape 1/16, index chunk 4/4.
165s Building reference seed array...  [0.001s]
165s Building query seed array...  [0s]
165s Computing hash join...  [0s]
165s Masking low complexity seeds...  [0s]
165s Searching alignments...  [0s]
165s Deallocating memory...  [0s]
165s Processing query block 1, reference block 1/1, shape 2/16, index chunk 1/4.
165s Building reference seed array...  [0.001s]
165s Building query seed array...  [0s]
165s Computing hash join...  [0s]
165s Masking low complexity seeds...  [0s]
165s Searching alignments...  [0s]
165s Deallocating memory...  [0s]
165s Processing query block 1, reference block 1/1, shape 2/16, index chunk 2/4.
165s Building reference seed array...  [0.001s]
165s Building query seed array...  [0s]
165s Computing hash join...  [0s]
165s Masking low complexity seeds...  [0s]
165s Searching alignments...  [0s]
165s Deallocating memory...  [0s]
165s Processing query block 1, reference block 1/1, shape 2/16, index chunk 3/4.
165s Building reference seed array...  [0.001s]
165s Building query seed array...  [0s]
165s Computing hash join...  [0s]
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165s Searching alignments...  [0s]
165s Deallocating memory...  [0s]
165s Processing query block 1, reference block 1/1, shape 2/16, index chunk 4/4.
165s Building reference seed array...  [0.001s]
165s Building query seed array...  [0s]
165s Computing hash join...  [0s]
165s Masking low complexity seeds...  [0s]
165s Searching alignments...  [0s]
165s Deallocating memory...  [0s]
165s Processing query block 1, reference block 1/1, shape 3/16, index chunk 1/4.
165s Building reference seed array...  [0.001s]
165s Building query seed array...  [0s]
165s Computing hash join...  [0s]
165s Masking low complexity seeds...  [0s]
165s Searching alignments...  [0s]
165s Deallocating memory...  [0s]
165s Processing query block 1, reference block 1/1, shape 3/16, index chunk 2/4.
165s Building reference seed array...  [0.001s]
165s Building query seed array...  [0s]
165s Computing hash join...  [0s]
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165s Searching alignments...  [0s]
165s Deallocating memory...  [0s]
165s Processing query block 1, reference block 1/1, shape 3/16, index chunk 3/4.
165s Building reference seed array...  [0.001s]
165s Building query seed array...  [0s]
165s Computing hash join...  [0s]
165s Masking low complexity seeds...  [0s]
165s Searching alignments...  [0s]
165s Deallocating memory...  [0s]
165s Processing query block 1, reference block 1/1, shape 3/16, index chunk 4/4.
165s Building reference seed array...  [0.001s]
165s Building query seed array...  [0s]
165s Computing hash join...  [0s]
165s Masking low complexity seeds...  [0s]
165s Searching alignments...  [0s]
165s Deallocating memory...  [0s]
165s Processing query block 1, reference block 1/1, shape 4/16, index chunk 1/4.
165s Building reference seed array...  [0.001s]
165s Building query seed array...  [0s]
165s Computing hash join...  [0s]
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165s Searching alignments...  [0s]
165s Deallocating memory...  [0s]
165s Processing query block 1, reference block 1/1, shape 4/16, index chunk 2/4.
165s Building reference seed array...  [0.001s]
165s Building query seed array...  [0s]
165s Computing hash join...  [0s]
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165s Searching alignments...  [0s]
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165s Processing query block 1, reference block 1/1, shape 4/16, index chunk 3/4.
165s Building reference seed array...  [0.001s]
165s Building query seed array...  [0s]
165s Computing hash join...  [0s]
165s Masking low complexity seeds...  [0s]
165s Searching alignments...  [0s]
165s Deallocating memory...  [0s]
165s Processing query block 1, reference block 1/1, shape 4/16, index chunk 4/4.
165s Building reference seed array...  [0.001s]
165s Building query seed array...  [0s]
165s Computing hash join...  [0s]
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165s Searching alignments...  [0s]
165s Deallocating memory...  [0s]
165s Processing query block 1, reference block 1/1, shape 5/16, index chunk 1/4.
165s Building reference seed array...  [0.001s]
165s Building query seed array...  [0s]
165s Computing hash join...  [0s]
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165s Searching alignments...  [0s]
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165s Processing query block 1, reference block 1/1, shape 5/16, index chunk 2/4.
165s Building reference seed array...  [0.001s]
165s Building query seed array...  [0s]
165s Computing hash join...  [0s]
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165s Searching alignments...  [0s]
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165s Processing query block 1, reference block 1/1, shape 5/16, index chunk 3/4.
165s Building reference seed array...  [0.001s]
165s Building query seed array...  [0s]
165s Computing hash join...  [0s]
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165s Deallocating memory...  [0s]
165s Processing query block 1, reference block 1/1, shape 5/16, index chunk 4/4.
165s Building reference seed array...  [0.001s]
165s Building query seed array...  [0s]
165s Computing hash join...  [0s]
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165s Searching alignments...  [0s]
165s Deallocating memory...  [0s]
165s Processing query block 1, reference block 1/1, shape 6/16, index chunk 1/4.
165s Building reference seed array...  [0.001s]
165s Building query seed array...  [0s]
165s Computing hash join...  [0s]
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165s Searching alignments...  [0s]
165s Deallocating memory...  [0s]
165s Processing query block 1, reference block 1/1, shape 6/16, index chunk 2/4.
165s Building reference seed array...  [0.001s]
165s Building query seed array...  [0s]
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165s Searching alignments...  [0s]
165s Deallocating memory...  [0s]
165s Processing query block 1, reference block 1/1, shape 6/16, index chunk 3/4.
165s Building reference seed array...  [0.002s]
166s Building query seed array...  [0s]
166s Computing hash join...  [0s]
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166s Deallocating memory...  [0s]
166s Processing query block 1, reference block 1/1, shape 6/16, index chunk 4/4.
166s Building reference seed array...  [0.001s]
166s Building query seed array...  [0s]
166s Computing hash join...  [0s]
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166s Searching alignments...  [0s]
166s Deallocating memory...  [0s]
166s Processing query block 1, reference block 1/1, shape 7/16, index chunk 1/4.
166s Building reference seed array...  [0.001s]
166s Building query seed array...  [0s]
166s Computing hash join...  [0s]
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166s Searching alignments...  [0s]
166s Deallocating memory...  [0s]
166s Processing query block 1, reference block 1/1, shape 7/16, index chunk 2/4.
166s Building reference seed array...  [0.001s]
166s Building query seed array...  [0s]
166s Computing hash join...  [0s]
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166s Deallocating memory...  [0s]
166s Processing query block 1, reference block 1/1, shape 7/16, index chunk 3/4.
166s Building reference seed array...  [0.001s]
166s Building query seed array...  [0s]
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166s Deallocating memory...  [0s]
166s Processing query block 1, reference block 1/1, shape 7/16, index chunk 4/4.
166s Building reference seed array...  [0.001s]
166s Building query seed array...  [0s]
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166s Deallocating memory...  [0s]
166s Processing query block 1, reference block 1/1, shape 8/16, index chunk 1/4.
166s Building reference seed array...  [0.001s]
166s Building query seed array...  [0s]
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166s Processing query block 1, reference block 1/1, shape 8/16, index chunk 2/4.
166s Building reference seed array...  [0.001s]
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166s Searching alignments...  [0s]
166s Deallocating memory...  [0s]
166s Processing query block 1, reference block 1/1, shape 8/16, index chunk 3/4.
166s Building reference seed array...  [0.001s]
166s Building query seed array...  [0s]
166s Computing hash join...  [0s]
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166s Searching alignments...  [0s]
166s Deallocating memory...  [0s]
166s Processing query block 1, reference block 1/1, shape 8/16, index chunk 4/4.
166s Building reference seed array...  [0.001s]
166s Building query seed array...  [0s]
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166s Searching alignments...  [0s]
166s Deallocating memory...  [0s]
166s Processing query block 1, reference block 1/1, shape 9/16, index chunk 1/4.
166s Building reference seed array...  [0.001s]
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166s Deallocating memory...  [0s]
166s Processing query block 1, reference block 1/1, shape 9/16, index chunk 2/4.
166s Building reference seed array...  [0.001s]
166s Building query seed array...  [0s]
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166s Searching alignments...  [0s]
166s Deallocating memory...  [0s]
166s Processing query block 1, reference block 1/1, shape 9/16, index chunk 3/4.
166s Building reference seed array...  [0.001s]
166s Building query seed array...  [0s]
166s Computing hash join...  [0s]
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166s Deallocating memory...  [0s]
166s Processing query block 1, reference block 1/1, shape 9/16, index chunk 4/4.
166s Building reference seed array...  [0.001s]
166s Building query seed array...  [0s]
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166s Searching alignments...  [0s]
166s Deallocating memory...  [0s]
166s Processing query block 1, reference block 1/1, shape 10/16, index chunk 1/4.
166s Building reference seed array...  [0.001s]
166s Building query seed array...  [0s]
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166s Deallocating memory...  [0s]
166s Processing query block 1, reference block 1/1, shape 10/16, index chunk 2/4.
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166s Processing query block 1, reference block 1/1, shape 10/16, index chunk 3/4.
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166s Searching alignments...  [0s]
166s Deallocating memory...  [0s]
166s Processing query block 1, reference block 1/1, shape 11/16, index chunk 1/4.
166s Building reference seed array...  [0.001s]
166s Building query seed array...  [0s]
166s Computing hash join...  [0s]
166s Masking low complexity seeds...  [0s]
166s Searching alignments...  [0s]
166s Deallocating memory...  [0s]
166s Processing query block 1, reference block 1/1, shape 11/16, index chunk 2/4.
166s Building reference seed array...  [0.001s]
166s Building query seed array...  [0s]
166s Computing hash join...  [0s]
166s Masking low complexity seeds...  [0s]
166s Searching alignments...  [0s]
166s Deallocating memory...  [0s]
166s Processing query block 1, reference block 1/1, shape 11/16, index chunk 3/4.
166s Building reference seed array...  [0.001s]
166s Building query seed array...  [0s]
166s Computing hash join...  [0s]
166s Masking low complexity seeds...  [0s]
166s Searching alignments...  [0s]
166s Deallocating memory...  [0s]
166s Processing query block 1, reference block 1/1, shape 11/16, index chunk 4/4.
166s Building reference seed array...  [0.001s]
166s Building query seed array...  [0s]
166s Computing hash join...  [0s]
166s Masking low complexity seeds...  [0s]
166s Searching alignments...  [0s]
166s Deallocating memory...  [0s]
166s Processing query block 1, reference block 1/1, shape 12/16, index chunk 1/4.
166s Building reference seed array...  [0.001s]
166s Building query seed array...  [0s]
166s Computing hash join...  [0s]
166s Masking low complexity seeds...  [0s]
166s Searching alignments...  [0s]
166s Deallocating memory...  [0s]
166s Processing query block 1, reference block 1/1, shape 12/16, index chunk 2/4.
166s Building reference seed array...  [0.001s]
166s Building query seed array...  [0s]
166s Computing hash join...  [0s]
166s Masking low complexity seeds...  [0s]
166s Searching alignments...  [0s]
166s Deallocating memory...  [0s]
166s Processing query block 1, reference block 1/1, shape 12/16, index chunk 3/4.
166s Building reference seed array...  [0.001s]
166s Building query seed array...  [0s]
166s Computing hash join...  [0s]
166s Masking low complexity seeds...  [0s]
166s Searching alignments...  [0s]
166s Deallocating memory...  [0s]
166s Processing query block 1, reference block 1/1, shape 12/16, index chunk 4/4.
166s Building reference seed array...  [0.001s]
166s Building query seed array...  [0s]
166s Computing hash join...  [0s]
166s Masking low complexity seeds...  [0s]
166s Searching alignments...  [0s]
166s Deallocating memory...  [0s]
166s Processing query block 1, reference block 1/1, shape 13/16, index chunk 1/4.
166s Building reference seed array...  [0.001s]
166s Building query seed array...  [0s]
166s Computing hash join...  [0s]
166s Masking low complexity seeds...  [0s]
166s Searching alignments...  [0s]
166s Deallocating memory...  [0s]
166s Processing query block 1, reference block 1/1, shape 13/16, index chunk 2/4.
166s Building reference seed array...  [0.001s]
166s Building query seed array...  [0s]
166s Computing hash join...  [0s]
166s Masking low complexity seeds...  [0s]
166s Searching alignments...  [0s]
166s Deallocating memory...  [0s]
166s Processing query block 1, reference block 1/1, shape 13/16, index chunk 3/4.
166s Building reference seed array...  [0.001s]
166s Building query seed array...  [0s]
166s Computing hash join...  [0s]
166s Masking low complexity seeds...  [0s]
166s Searching alignments...  [0s]
166s Deallocating memory...  [0s]
166s Processing query block 1, reference block 1/1, shape 13/16, index chunk 4/4.
166s Building reference seed array...  [0.001s]
166s Building query seed array...  [0s]
166s Computing hash join...  [0s]
166s Masking low complexity seeds...  [0s]
166s Searching alignments...  [0s]
166s Deallocating memory...  [0s]
166s Processing query block 1, reference block 1/1, shape 14/16, index chunk 1/4.
166s Building reference seed array...  [0.001s]
166s Building query seed array...  [0s]
166s Computing hash join...  [0s]
166s Masking low complexity seeds...  [0s]
166s Searching alignments...  [0s]
166s Deallocating memory...  [0s]
166s Processing query block 1, reference block 1/1, shape 14/16, index chunk 2/4.
166s Building reference seed array...  [0.001s]
166s Building query seed array...  [0s]
166s Computing hash join...  [0s]
166s Masking low complexity seeds...  [0s]
166s Searching alignments...  [0s]
166s Deallocating memory...  [0s]
166s Processing query block 1, reference block 1/1, shape 14/16, index chunk 3/4.
166s Building reference seed array...  [0.001s]
166s Building query seed array...  [0s]
166s Computing hash join...  [0s]
166s Masking low complexity seeds...  [0s]
166s Searching alignments...  [0s]
166s Deallocating memory...  [0s]
166s Processing query block 1, reference block 1/1, shape 14/16, index chunk 4/4.
166s Building reference seed array...  [0.001s]
166s Building query seed array...  [0s]
166s Computing hash join...  [0s]
166s Masking low complexity seeds...  [0s]
166s Searching alignments...  [0s]
166s Deallocating memory...  [0s]
166s Processing query block 1, reference block 1/1, shape 15/16, index chunk 1/4.
166s Building reference seed array...  [0.001s]
166s Building query seed array...  [0s]
166s Computing hash join...  [0s]
166s Masking low complexity seeds...  [0s]
166s Searching alignments...  [0s]
166s Deallocating memory...  [0s]
166s Processing query block 1, reference block 1/1, shape 15/16, index chunk 2/4.
166s Building reference seed array...  [0.001s]
166s Building query seed array...  [0s]
166s Computing hash join...  [0s]
166s Masking low complexity seeds...  [0s]
166s Searching alignments...  [0s]
166s Deallocating memory...  [0s]
166s Processing query block 1, reference block 1/1, shape 15/16, index chunk 3/4.
166s Building reference seed array...  [0.001s]
166s Building query seed array...  [0s]
166s Computing hash join...  [0s]
166s Masking low complexity seeds...  [0s]
166s Searching alignments...  [0s]
166s Deallocating memory...  [0s]
166s Processing query block 1, reference block 1/1, shape 15/16, index chunk 4/4.
166s Building reference seed array...  [0.001s]
166s Building query seed array...  [0s]
166s Computing hash join...  [0s]
166s Masking low complexity seeds...  [0s]
166s Searching alignments...  [0s]
166s Deallocating memory...  [0s]
166s Processing query block 1, reference block 1/1, shape 16/16, index chunk 1/4.
166s Building reference seed array...  [0.001s]
166s Building query seed array...  [0s]
166s Computing hash join...  [0s]
166s Masking low complexity seeds...  [0s]
166s Searching alignments...  [0s]
166s Deallocating memory...  [0s]
166s Processing query block 1, reference block 1/1, shape 16/16, index chunk 2/4.
166s Building reference seed array...  [0.001s]
166s Building query seed array...  [0s]
166s Computing hash join...  [0s]
166s Masking low complexity seeds...  [0s]
166s Searching alignments...  [0s]
166s Deallocating memory...  [0s]
166s Processing query block 1, reference block 1/1, shape 16/16, index chunk 3/4.
166s Building reference seed array...  [0.001s]
166s Building query seed array...  [0s]
166s Computing hash join...  [0s]
166s Masking low complexity seeds...  [0s]
166s Searching alignments...  [0s]
166s Deallocating memory...  [0s]
166s Processing query block 1, reference block 1/1, shape 16/16, index chunk 4/4.
166s Building reference seed array...  [0.001s]
166s Building query seed array...  [0s]
166s Computing hash join...  [0s]
166s Masking low complexity seeds...  [0s]
166s Searching alignments...  [0s]
166s Deallocating memory...  [0s]
166s Deallocating buffers...  [0s]
166s Clearing query masking...  [0s]
166s Computing alignments... Loading trace points...  [0s]
166s Sorting trace points...  [0s]
166s Computing alignments...  [0.001s]
166s Deallocating buffers...  [0s]
166s Loading trace points...  [0s]
166s  [0.002s]
166s Deallocating reference...  [0s]
166s Loading reference sequences...  [0s]
166s Deallocating buffers...  [0s]
166s Deallocating queries...  [0s]
166s Loading query sequences...  [0s]
166s Closing the input file...  [0s]
166s Closing the output file...  [0s]
166s Closing the database...  [0s]
166s Cleaning up...  [0s]
166s Total time = 0.232s
166s Reported 1 pairwise alignments, 1 HSPs.
166s 1 queries aligned.
166s + diamond blastp --threads 1 --db test/C2.faa.diamond --query test/M.faa --out /tmp/tmp.gdxNHDneSh/M.faa.vs.C2.faa.diamond -e 1e-05 --outfmt 6 --sensitive
166s diamond v2.1.9.163 (C) Max Planck Society for the Advancement of Science, Benjamin Buchfink, University of Tuebingen
166s Documentation, support and updates available at http://www.diamondsearch.org
166s Please cite: http://dx.doi.org/10.1038/s41592-021-01101-x Nature Methods (2021)
166s 
166s #CPU threads: 1
166s Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1)
166s Temporary directory: /tmp/tmp.gdxNHDneSh
166s #Target sequences to report alignments for: 25
166s Opening the database...  [0s]
166s Database: test/C2.faa.diamond (type: Diamond database, sequences: 2, letters: 726)
166s Block size = 2000000000
166s Opening the input file...  [0s]
166s Opening the output file...  [0s]
166s Loading query sequences...  [0s]
166s Masking queries...  [0.008s]
166s Algorithm: Double-indexed
166s Building query histograms...  [0.006s]
166s Seeking in database...  [0s]
166s Loading reference sequences...  [0s]
166s Masking reference...  [0s]
166s Initializing temporary storage...  [0s]
166s Building reference histograms...  [0s]
166s Allocating buffers...  [0s]
166s Processing query block 1, reference block 1/1, shape 1/16, index chunk 1/4.
166s Building reference seed array...  [0s]
166s Building query seed array...  [0.001s]
166s Computing hash join...  [0s]
166s Masking low complexity seeds...  [0s]
166s Searching alignments...  [0s]
166s Deallocating memory...  [0s]
166s Processing query block 1, reference block 1/1, shape 1/16, index chunk 2/4.
166s Building reference seed array...  [0s]
166s Building query seed array...  [0.001s]
166s Computing hash join...  [0s]
166s Masking low complexity seeds...  [0s]
166s Searching alignments...  [0s]
166s Deallocating memory...  [0s]
166s Processing query block 1, reference block 1/1, shape 1/16, index chunk 3/4.
166s Building reference seed array...  [0s]
166s Building query seed array...  [0.001s]
166s Computing hash join...  [0s]
166s Masking low complexity seeds...  [0s]
166s Searching alignments...  [0s]
166s Deallocating memory...  [0s]
166s Processing query block 1, reference block 1/1, shape 1/16, index chunk 4/4.
166s Building reference seed array...  [0s]
166s Building query seed array...  [0.001s]
166s Computing hash join...  [0s]
166s Masking low complexity seeds...  [0s]
166s Searching alignments...  [0s]
166s Deallocating memory...  [0s]
166s Processing query block 1, reference block 1/1, shape 2/16, index chunk 1/4.
166s Building reference seed array...  [0s]
166s Building query seed array...  [0.001s]
166s Computing hash join...  [0s]
166s Masking low complexity seeds...  [0s]
166s Searching alignments...  [0s]
166s Deallocating memory...  [0s]
166s Processing query block 1, reference block 1/1, shape 2/16, index chunk 2/4.
166s Building reference seed array...  [0s]
166s Building query seed array...  [0.001s]
166s Computing hash join...  [0s]
166s Masking low complexity seeds...  [0s]
166s Searching alignments...  [0s]
166s Deallocating memory...  [0s]
166s Processing query block 1, reference block 1/1, shape 2/16, index chunk 3/4.
166s Building reference seed array...  [0s]
166s Building query seed array...  [0.001s]
166s Computing hash join...  [0s]
166s Masking low complexity seeds...  [0s]
166s Searching alignments...  [0s]
166s Deallocating memory...  [0s]
166s Processing query block 1, reference block 1/1, shape 2/16, index chunk 4/4.
166s Building reference seed array...  [0s]
166s Building query seed array...  [0.001s]
166s Computing hash join...  [0s]
166s Masking low complexity seeds...  [0s]
166s Searching alignments...  [0s]
166s Deallocating memory...  [0s]
166s Processing query block 1, reference block 1/1, shape 3/16, index chunk 1/4.
166s Building reference seed array...  [0s]
166s Building query seed array...  [0.001s]
166s Computing hash join...  [0s]
166s Masking low complexity seeds...  [0s]
166s Searching alignments...  [0s]
166s Deallocating memory...  [0s]
166s Processing query block 1, reference block 1/1, shape 3/16, index chunk 2/4.
166s Building reference seed array...  [0s]
166s Building query seed array...  [0.001s]
166s Computing hash join...  [0s]
166s Masking low complexity seeds...  [0s]
166s Searching alignments...  [0s]
166s Deallocating memory...  [0s]
166s Processing query block 1, reference block 1/1, shape 3/16, index chunk 3/4.
166s Building reference seed array...  [0s]
166s Building query seed array...  [0.001s]
166s Computing hash join...  [0s]
166s Masking low complexity seeds...  [0s]
166s Searching alignments...  [0s]
166s Deallocating memory...  [0s]
166s Processing query block 1, reference block 1/1, shape 3/16, index chunk 4/4.
166s Building reference seed array...  [0s]
166s Building query seed array...  [0.001s]
166s Computing hash join...  [0s]
166s Masking low complexity seeds...  [0s]
166s Searching alignments...  [0s]
166s Deallocating memory...  [0s]
166s Processing query block 1, reference block 1/1, shape 4/16, index chunk 1/4.
166s Building reference seed array...  [0s]
166s Building query seed array...  [0.001s]
166s Computing hash join...  [0s]
166s Masking low complexity seeds...  [0s]
166s Searching alignments...  [0s]
166s Deallocating memory...  [0s]
166s Processing query block 1, reference block 1/1, shape 4/16, index chunk 2/4.
166s Building reference seed array...  [0s]
166s Building query seed array...  [0.001s]
166s Computing hash join...  [0s]
166s Masking low complexity seeds...  [0s]
166s Searching alignments...  [0s]
166s Deallocating memory...  [0s]
166s Processing query block 1, reference block 1/1, shape 4/16, index chunk 3/4.
166s Building reference seed array...  [0s]
166s Building query seed array...  [0.001s]
166s Computing hash join...  [0s]
166s Masking low complexity seeds...  [0s]
166s Searching alignments...  [0s]
166s Deallocating memory...  [0s]
166s Processing query block 1, reference block 1/1, shape 4/16, index chunk 4/4.
166s Building reference seed array...  [0s]
166s Building query seed array...  [0.001s]
166s Computing hash join...  [0s]
166s Masking low complexity seeds...  [0s]
166s Searching alignments...  [0s]
166s Deallocating memory...  [0s]
166s Processing query block 1, reference block 1/1, shape 5/16, index chunk 1/4.
166s Building reference seed array...  [0s]
166s Building query seed array...  [0.001s]
166s Computing hash join...  [0s]
166s Masking low complexity seeds...  [0s]
166s Searching alignments...  [0s]
166s Deallocating memory...  [0s]
166s Processing query block 1, reference block 1/1, shape 5/16, index chunk 2/4.
166s Building reference seed array...  [0s]
166s Building query seed array...  [0.001s]
166s Computing hash join...  [0s]
166s Masking low complexity seeds...  [0s]
166s Searching alignments...  [0s]
166s Deallocating memory...  [0s]
166s Processing query block 1, reference block 1/1, shape 5/16, index chunk 3/4.
166s Building reference seed array...  [0s]
166s Building query seed array...  [0.001s]
166s Computing hash join...  [0s]
166s Masking low complexity seeds...  [0s]
166s Searching alignments...  [0s]
166s Deallocating memory...  [0s]
166s Processing query block 1, reference block 1/1, shape 5/16, index chunk 4/4.
166s Building reference seed array...  [0s]
166s Building query seed array...  [0.001s]
166s Computing hash join...  [0s]
166s Masking low complexity seeds...  [0s]
166s Searching alignments...  [0s]
166s Deallocating memory...  [0s]
166s Processing query block 1, reference block 1/1, shape 6/16, index chunk 1/4.
166s Building reference seed array...  [0s]
166s Building query seed array...  [0.001s]
166s Computing hash join...  [0s]
166s Masking low complexity seeds...  [0s]
166s Searching alignments...  [0s]
166s Deallocating memory...  [0s]
166s Processing query block 1, reference block 1/1, shape 6/16, index chunk 2/4.
166s Building reference seed array...  [0s]
166s Building query seed array...  [0.001s]
166s Computing hash join...  [0s]
166s Masking low complexity seeds...  [0s]
166s Searching alignments...  [0s]
166s Deallocating memory...  [0s]
166s Processing query block 1, reference block 1/1, shape 6/16, index chunk 3/4.
166s Building reference seed array...  [0s]
166s Building query seed array...  [0.001s]
166s Computing hash join...  [0s]
166s Masking low complexity seeds...  [0s]
166s Searching alignments...  [0s]
166s Deallocating memory...  [0s]
166s Processing query block 1, reference block 1/1, shape 6/16, index chunk 4/4.
166s Building reference seed array...  [0s]
166s Building query seed array...  [0.001s]
166s Computing hash join...  [0s]
166s Masking low complexity seeds...  [0s]
166s Searching alignments...  [0s]
166s Deallocating memory...  [0s]
166s Processing query block 1, reference block 1/1, shape 7/16, index chunk 1/4.
166s Building reference seed array...  [0s]
166s Building query seed array...  [0.001s]
166s Computing hash join...  [0s]
166s Masking low complexity seeds...  [0s]
166s Searching alignments...  [0s]
166s Deallocating memory...  [0s]
166s Processing query block 1, reference block 1/1, shape 7/16, index chunk 2/4.
166s Building reference seed array...  [0s]
166s Building query seed array...  [0.001s]
166s Computing hash join...  [0s]
166s Masking low complexity seeds...  [0s]
166s Searching alignments...  [0s]
166s Deallocating memory...  [0s]
166s Processing query block 1, reference block 1/1, shape 7/16, index chunk 3/4.
166s Building reference seed array...  [0s]
166s Building query seed array...  [0.001s]
166s Computing hash join...  [0s]
166s Masking low complexity seeds...  [0s]
166s Searching alignments...  [0s]
166s Deallocating memory...  [0s]
166s Processing query block 1, reference block 1/1, shape 7/16, index chunk 4/4.
166s Building reference seed array...  [0s]
166s Building query seed array...  [0.001s]
166s Computing hash join...  [0s]
166s Masking low complexity seeds...  [0s]
166s Searching alignments...  [0s]
166s Deallocating memory...  [0s]
166s Processing query block 1, reference block 1/1, shape 8/16, index chunk 1/4.
166s Building reference seed array...  [0s]
166s Building query seed array...  [0.001s]
166s Computing hash join...  [0s]
166s Masking low complexity seeds...  [0s]
166s Searching alignments...  [0s]
166s Deallocating memory...  [0s]
166s Processing query block 1, reference block 1/1, shape 8/16, index chunk 2/4.
166s Building reference seed array...  [0s]
166s Building query seed array...  [0.001s]
166s Computing hash join...  [0s]
166s Masking low complexity seeds...  [0s]
166s Searching alignments...  [0s]
166s Deallocating memory...  [0s]
166s Processing query block 1, reference block 1/1, shape 8/16, index chunk 3/4.
166s Building reference seed array...  [0s]
166s Building query seed array...  [0.001s]
166s Computing hash join...  [0s]
166s Masking low complexity seeds...  [0s]
166s Searching alignments...  [0s]
166s Deallocating memory...  [0s]
166s Processing query block 1, reference block 1/1, shape 8/16, index chunk 4/4.
166s Building reference seed array...  [0s]
166s Building query seed array...  [0.001s]
166s Computing hash join...  [0s]
166s Masking low complexity seeds...  [0s]
166s Searching alignments...  [0s]
166s Deallocating memory...  [0s]
166s Processing query block 1, reference block 1/1, shape 9/16, index chunk 1/4.
166s Building reference seed array...  [0s]
166s Building query seed array...  [0.001s]
166s Computing hash join...  [0s]
166s Masking low complexity seeds...  [0s]
166s Searching alignments...  [0s]
166s Deallocating memory...  [0s]
166s Processing query block 1, reference block 1/1, shape 9/16, index chunk 2/4.
166s Building reference seed array...  [0s]
166s Building query seed array...  [0.001s]
166s Computing hash join...  [0s]
166s Masking low complexity seeds...  [0s]
166s Searching alignments...  [0s]
166s Deallocating memory...  [0s]
166s Processing query block 1, reference block 1/1, shape 9/16, index chunk 3/4.
166s Building reference seed array...  [0s]
166s Building query seed array...  [0.001s]
166s Computing hash join...  [0s]
166s Masking low complexity seeds...  [0s]
166s Searching alignments...  [0s]
166s Deallocating memory...  [0s]
166s Processing query block 1, reference block 1/1, shape 9/16, index chunk 4/4.
166s Building reference seed array...  [0s]
166s Building query seed array...  [0.001s]
166s Computing hash join...  [0s]
166s Masking low complexity seeds...  [0s]
166s Searching alignments...  [0s]
166s Deallocating memory...  [0s]
166s Processing query block 1, reference block 1/1, shape 10/16, index chunk 1/4.
166s Building reference seed array...  [0s]
166s Building query seed array...  [0.001s]
166s Computing hash join...  [0s]
166s Masking low complexity seeds...  [0s]
166s Searching alignments...  [0s]
166s Deallocating memory...  [0s]
166s Processing query block 1, reference block 1/1, shape 10/16, index chunk 2/4.
166s Building reference seed array...  [0s]
166s Building query seed array...  [0.001s]
166s Computing hash join...  [0s]
166s Masking low complexity seeds...  [0s]
166s Searching alignments...  [0s]
166s Deallocating memory...  [0s]
166s Processing query block 1, reference block 1/1, shape 10/16, index chunk 3/4.
166s Building reference seed array...  [0s]
166s Building query seed array...  [0.001s]
166s Computing hash join...  [0s]
166s Masking low complexity seeds...  [0s]
166s Searching alignments...  [0s]
166s Deallocating memory...  [0s]
166s Processing query block 1, reference block 1/1, shape 10/16, index chunk 4/4.
166s Building reference seed array...  [0s]
166s Building query seed array...  [0.001s]
166s Computing hash join...  [0s]
166s Masking low complexity seeds...  [0s]
166s Searching alignments...  [0s]
166s Deallocating memory...  [0s]
166s Processing query block 1, reference block 1/1, shape 11/16, index chunk 1/4.
166s Building reference seed array...  [0s]
166s Building query seed array...  [0.001s]
166s Computing hash join...  [0s]
166s Masking low complexity seeds...  [0s]
166s Searching alignments...  [0s]
166s Deallocating memory...  [0s]
166s Processing query block 1, reference block 1/1, shape 11/16, index chunk 2/4.
166s Building reference seed array...  [0s]
166s Building query seed array...  [0.001s]
166s Computing hash join...  [0s]
166s Masking low complexity seeds...  [0s]
166s Searching alignments...  [0s]
166s Deallocating memory...  [0s]
166s Processing query block 1, reference block 1/1, shape 11/16, index chunk 3/4.
166s Building reference seed array...  [0s]
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166s Searching alignments...  [0s]
166s Deallocating memory...  [0s]
166s Processing query block 1, reference block 1/1, shape 11/16, index chunk 4/4.
166s Building reference seed array...  [0s]
166s Building query seed array...  [0.001s]
166s Computing hash join...  [0s]
166s Masking low complexity seeds...  [0s]
166s Searching alignments...  [0s]
166s Deallocating memory...  [0s]
166s Processing query block 1, reference block 1/1, shape 12/16, index chunk 1/4.
166s Building reference seed array...  [0s]
166s Building query seed array...  [0.001s]
166s Computing hash join...  [0s]
166s Masking low complexity seeds...  [0s]
166s Searching alignments...  [0s]
166s Deallocating memory...  [0s]
166s Processing query block 1, reference block 1/1, shape 12/16, index chunk 2/4.
166s Building reference seed array...  [0s]
166s Building query seed array...  [0.001s]
166s Computing hash join...  [0s]
166s Masking low complexity seeds...  [0s]
166s Searching alignments...  [0s]
166s Deallocating memory...  [0s]
166s Processing query block 1, reference block 1/1, shape 12/16, index chunk 3/4.
166s Building reference seed array...  [0s]
166s Building query seed array...  [0.001s]
166s Computing hash join...  [0s]
166s Masking low complexity seeds...  [0s]
166s Searching alignments...  [0s]
166s Deallocating memory...  [0s]
166s Processing query block 1, reference block 1/1, shape 12/16, index chunk 4/4.
166s Building reference seed array...  [0s]
166s Building query seed array...  [0.001s]
166s Computing hash join...  [0s]
166s Masking low complexity seeds...  [0s]
166s Searching alignments...  [0s]
166s Deallocating memory...  [0s]
166s Processing query block 1, reference block 1/1, shape 13/16, index chunk 1/4.
166s Building reference seed array...  [0s]
166s Building query seed array...  [0.001s]
166s Computing hash join...  [0s]
166s Masking low complexity seeds...  [0s]
166s Searching alignments...  [0s]
166s Deallocating memory...  [0s]
166s Processing query block 1, reference block 1/1, shape 13/16, index chunk 2/4.
166s Building reference seed array...  [0s]
166s Building query seed array...  [0.001s]
166s Computing hash join...  [0s]
166s Masking low complexity seeds...  [0s]
166s Searching alignments...  [0s]
166s Deallocating memory...  [0s]
166s Processing query block 1, reference block 1/1, shape 13/16, index chunk 3/4.
166s Building reference seed array...  [0s]
166s Building query seed array...  [0.001s]
166s Computing hash join...  [0s]
166s Masking low complexity seeds...  [0s]
166s Searching alignments...  [0s]
166s Deallocating memory...  [0s]
166s Processing query block 1, reference block 1/1, shape 13/16, index chunk 4/4.
166s Building reference seed array...  [0s]
166s Building query seed array...  [0.001s]
166s Computing hash join...  [0s]
166s Masking low complexity seeds...  [0s]
166s Searching alignments...  [0s]
166s Deallocating memory...  [0s]
166s Processing query block 1, reference block 1/1, shape 14/16, index chunk 1/4.
166s Building reference seed array...  [0s]
166s Building query seed array...  [0.001s]
166s Computing hash join...  [0s]
166s Masking low complexity seeds...  [0s]
166s Searching alignments...  [0s]
166s Deallocating memory...  [0s]
166s Processing query block 1, reference block 1/1, shape 14/16, index chunk 2/4.
166s Building reference seed array...  [0s]
166s Building query seed array...  [0.001s]
166s Computing hash join...  [0s]
166s Masking low complexity seeds...  [0s]
166s Searching alignments...  [0s]
166s Deallocating memory...  [0s]
166s Processing query block 1, reference block 1/1, shape 14/16, index chunk 3/4.
166s Building reference seed array...  [0s]
166s Building query seed array...  [0.001s]
166s Computing hash join...  [0s]
166s Masking low complexity seeds...  [0s]
166s Searching alignments...  [0s]
166s Deallocating memory...  [0s]
166s Processing query block 1, reference block 1/1, shape 14/16, index chunk 4/4.
166s Building reference seed array...  [0s]
166s Building query seed array...  [0.001s]
166s Computing hash join...  [0s]
166s Masking low complexity seeds...  [0s]
166s Searching alignments...  [0s]
166s Deallocating memory...  [0s]
166s Processing query block 1, reference block 1/1, shape 15/16, index chunk 1/4.
166s Building reference seed array...  [0s]
166s Building query seed array...  [0.001s]
166s Computing hash join...  [0s]
166s Masking low complexity seeds...  [0s]
166s Searching alignments...  [0s]
166s Deallocating memory...  [0s]
166s Processing query block 1, reference block 1/1, shape 15/16, index chunk 2/4.
166s Building reference seed array...  [0s]
166s Building query seed array...  [0.001s]
166s Computing hash join...  [0s]
166s Masking low complexity seeds...  [0s]
166s Searching alignments...  [0s]
166s Deallocating memory...  [0s]
166s Processing query block 1, reference block 1/1, shape 15/16, index chunk 3/4.
166s Building reference seed array...  [0s]
166s Building query seed array...  [0.001s]
166s Computing hash join...  [0s]
166s Masking low complexity seeds...  [0s]
166s Searching alignments...  [0s]
166s Deallocating memory...  [0s]
166s Processing query block 1, reference block 1/1, shape 15/16, index chunk 4/4.
166s Building reference seed array...  [0s]
166s Building query seed array...  [0.001s]
166s Computing hash join...  [0s]
166s Masking low complexity seeds...  [0s]
166s Searching alignments...  [0s]
166s Deallocating memory...  [0s]
166s Processing query block 1, reference block 1/1, shape 16/16, index chunk 1/4.
166s Building reference seed array...  [0s]
166s Building query seed array...  [0.001s]
166s Computing hash join...  [0s]
166s Masking low complexity seeds...  [0s]
166s Searching alignments...  [0s]
166s Deallocating memory...  [0s]
166s Processing query block 1, reference block 1/1, shape 16/16, index chunk 2/4.
166s Building reference seed array...  [0s]
166s Building query seed array...  [0.001s]
166s Computing hash join...  [0s]
166s Masking low complexity seeds...  [0s]
166s Searching alignments...  [0s]
166s Deallocating memory...  [0s]
166s Processing query block 1, reference block 1/1, shape 16/16, index chunk 3/4.
166s Building reference seed array...  [0s]
166s Building query seed array...  [0.001s]
166s Computing hash join...  [0s]
166s Masking low complexity seeds...  [0s]
166s Searching alignments...  [0s]
166s Deallocating memory...  [0s]
166s Processing query block 1, reference block 1/1, shape 16/16, index chunk 4/4.
166s Building reference seed array...  [0s]
166s Building query seed array...  [0.001s]
166s Computing hash join...  [0s]
166s Masking low complexity seeds...  [0s]
166s Searching alignments...  [0s]
166s Deallocating memory...  [0s]
166s Deallocating buffers...  [0s]
166s Clearing query masking...  [0s]
166s Computing alignments... Loading trace points...  [0s]
166s Sorting trace points...  [0s]
166s Computing alignments...  [0.001s]
166s Deallocating buffers...  [0s]
166s Loading trace points...  [0s]
166s  [0.002s]
166s Deallocating reference...  [0s]
166s Loading reference sequences...  [0s]
166s Deallocating buffers...  [0s]
166s Deallocating queries...  [0s]
166s Loading query sequences...  [0s]
166s Closing the input file...  [0s]
166s Closing the output file...  [0s]
166s Closing the database...  [0s]
166s Cleaning up...  [0s]
166s Total time = 0.223s
166s Reported 1 pairwise alignments, 1 HSPs.
166s 1 queries aligned.
166s + rm -rf /tmp/tmp.gdxNHDneSh
166s autopkgtest [22:09:04]: test run-unit-test: -----------------------]
167s autopkgtest [22:09:05]: test run-unit-test:  - - - - - - - - - - results - - - - - - - - - -
167s run-unit-test        PASS
167s autopkgtest [22:09:05]: @@@@@@@@@@@@@@@@@@@@ summary
167s run-unit-test        PASS
174s nova [W] Using flock in prodstack6-s390x
174s flock: timeout while waiting to get lock
174s Creating nova instance adt-plucky-s390x-diamond-aligner-20250215-220618-juju-7f2275-prod-proposed-migration-environment-2-6c90054a-ba98-47e7-9c5d-ff82926e176a from image adt/ubuntu-plucky-s390x-server-20250215.img (UUID 099dc609-2061-4009-a65b-d554466baca0)...
174s nova [W] Timed out waiting for d0ac1c04-fcb9-4fd6-92a5-2a0751d68569 to get deleted.