2s autopkgtest [10:44:54]: starting date and time: 2024-11-13 10:44:54+0000
  3s autopkgtest [10:44:55]: git checkout: 6f3be7a8 Fix armhf LXD image generation for plucky
  3s autopkgtest [10:44:55]: host juju-7f2275-prod-proposed-migration-environment-15; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.q6qyar_7/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:python3-defaults,src:python3-stdlib-extensions --apt-upgrade cyvcf2 --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 '--env=ADT_TEST_TRIGGERS=python3-defaults/3.12.7-1 python3-stdlib-extensions/3.12.7-1' -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest-s390x --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-15@bos03-s390x-15.secgroup --name adt-plucky-s390x-cyvcf2-20241113-104451-juju-7f2275-prod-proposed-migration-environment-15-3f588155-18bc-4c53-9946-4eccb02d6be8 --image adt/ubuntu-plucky-s390x-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-15 --net-id=net_prod-proposed-migration-s390x -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,keyserver.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/
135s autopkgtest [10:47:07]: testbed dpkg architecture: s390x
136s autopkgtest [10:47:08]: testbed apt version: 2.9.8
136s autopkgtest [10:47:08]: @@@@@@@@@@@@@@@@@@@@ test bed setup
138s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease [73.9 kB]
138s Get:2 http://ftpmaster.internal/ubuntu plucky-proposed/restricted Sources [7016 B]
138s Get:3 http://ftpmaster.internal/ubuntu plucky-proposed/universe Sources [849 kB]
138s Get:4 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse Sources [15.3 kB]
138s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/main Sources [76.4 kB]
138s Get:6 http://ftpmaster.internal/ubuntu plucky-proposed/main s390x Packages [85.8 kB]
138s Get:7 http://ftpmaster.internal/ubuntu plucky-proposed/universe s390x Packages [565 kB]
138s Get:8 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse s390x Packages [16.6 kB]
138s Fetched 1689 kB in 1s (2078 kB/s)
138s Reading package lists...
141s Reading package lists...
141s Building dependency tree...
141s Reading state information...
141s Calculating upgrade...
142s The following NEW packages will be installed:
142s   python3.13-gdbm
142s The following packages will be upgraded:
142s   libgpgme11t64 libpython3-stdlib python3 python3-gdbm python3-minimal
142s 5 upgraded, 1 newly installed, 0 to remove and 0 not upgraded.
142s Need to get 252 kB of archives.
142s After this operation, 98.3 kB of additional disk space will be used.
142s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed/main s390x python3-minimal s390x 3.12.7-1 [27.4 kB]
142s Get:2 http://ftpmaster.internal/ubuntu plucky-proposed/main s390x python3 s390x 3.12.7-1 [24.0 kB]
142s Get:3 http://ftpmaster.internal/ubuntu plucky-proposed/main s390x libpython3-stdlib s390x 3.12.7-1 [10.0 kB]
142s Get:4 http://ftpmaster.internal/ubuntu plucky/main s390x python3.13-gdbm s390x 3.13.0-2 [31.0 kB]
142s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/main s390x python3-gdbm s390x 3.12.7-1 [8642 B]
142s Get:6 http://ftpmaster.internal/ubuntu plucky/main s390x libgpgme11t64 s390x 1.23.2-5ubuntu4 [151 kB]
142s Fetched 252 kB in 0s (583 kB/s)
142s (Reading database ... 
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(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 55510 files and directories currently installed.)
142s Preparing to unpack .../python3-minimal_3.12.7-1_s390x.deb ...
142s Unpacking python3-minimal (3.12.7-1) over (3.12.6-0ubuntu1) ...
142s Setting up python3-minimal (3.12.7-1) ...
143s (Reading database ... 
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(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 55510 files and directories currently installed.)
143s Preparing to unpack .../python3_3.12.7-1_s390x.deb ...
143s Unpacking python3 (3.12.7-1) over (3.12.6-0ubuntu1) ...
143s Preparing to unpack .../libpython3-stdlib_3.12.7-1_s390x.deb ...
143s Unpacking libpython3-stdlib:s390x (3.12.7-1) over (3.12.6-0ubuntu1) ...
143s Selecting previously unselected package python3.13-gdbm.
143s Preparing to unpack .../python3.13-gdbm_3.13.0-2_s390x.deb ...
143s Unpacking python3.13-gdbm (3.13.0-2) ...
143s Preparing to unpack .../python3-gdbm_3.12.7-1_s390x.deb ...
143s Unpacking python3-gdbm:s390x (3.12.7-1) over (3.12.6-1ubuntu1) ...
143s Preparing to unpack .../libgpgme11t64_1.23.2-5ubuntu4_s390x.deb ...
143s Unpacking libgpgme11t64:s390x (1.23.2-5ubuntu4) over (1.18.0-4.1ubuntu4) ...
143s Setting up libgpgme11t64:s390x (1.23.2-5ubuntu4) ...
143s Setting up python3.13-gdbm (3.13.0-2) ...
143s Setting up libpython3-stdlib:s390x (3.12.7-1) ...
143s Setting up python3 (3.12.7-1) ...
143s Setting up python3-gdbm:s390x (3.12.7-1) ...
143s Processing triggers for man-db (2.12.1-3) ...
143s Processing triggers for libc-bin (2.40-1ubuntu3) ...
144s Reading package lists...
144s Building dependency tree...
144s Reading state information...
144s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
144s Hit:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease
144s Hit:2 http://ftpmaster.internal/ubuntu plucky InRelease
144s Hit:3 http://ftpmaster.internal/ubuntu plucky-updates InRelease
144s Hit:4 http://ftpmaster.internal/ubuntu plucky-security InRelease
145s Reading package lists...
145s Reading package lists...
145s Building dependency tree...
145s Reading state information...
145s Calculating upgrade...
145s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
145s Reading package lists...
146s Building dependency tree...
146s Reading state information...
146s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
151s autopkgtest [10:47:23]: testbed running kernel: Linux 6.11.0-8-generic #8-Ubuntu SMP Mon Sep 16 12:49:35 UTC 2024
151s autopkgtest [10:47:23]: @@@@@@@@@@@@@@@@@@@@ apt-source cyvcf2
154s Get:1 http://ftpmaster.internal/ubuntu plucky/universe cyvcf2 0.31.1-2 (dsc) [2337 B]
154s Get:2 http://ftpmaster.internal/ubuntu plucky/universe cyvcf2 0.31.1-2 (tar) [420 kB]
154s Get:3 http://ftpmaster.internal/ubuntu plucky/universe cyvcf2 0.31.1-2 (diff) [6764 B]
154s gpgv: Signature made Wed Jul 31 09:42:06 2024 UTC
154s gpgv:                using RSA key 724D609337113C710550D7473C26763F6C67E6E2
154s gpgv: Can't check signature: No public key
154s dpkg-source: warning: cannot verify inline signature for ./cyvcf2_0.31.1-2.dsc: no acceptable signature found
154s autopkgtest [10:47:26]: testing package cyvcf2 version 0.31.1-2
158s autopkgtest [10:47:30]: build not needed
161s autopkgtest [10:47:33]: test run-unit-test: preparing testbed
167s Reading package lists...
167s Building dependency tree...
167s Reading state information...
167s Starting pkgProblemResolver with broken count: 0
167s Starting 2 pkgProblemResolver with broken count: 0
167s Done
167s The following additional packages will be installed:
167s   libblas3 libdeflate0 libgfortran5 libhts3t64 libhtscodecs2 liblapack3
167s   libpython3.13-minimal libpython3.13-stdlib python3-all python3-click
167s   python3-colorama python3-coloredlogs python3-cyvcf2 python3-humanfriendly
167s   python3-iniconfig python3-numpy python3-packaging python3-pluggy
167s   python3-pytest python3.13 python3.13-minimal
167s Suggested packages:
167s   gcc gfortran python-numpy-doc python3-dev python3.13-venv python3.13-doc
167s   binfmt-support
167s The following NEW packages will be installed:
167s   autopkgtest-satdep libblas3 libdeflate0 libgfortran5 libhts3t64
167s   libhtscodecs2 liblapack3 libpython3.13-minimal libpython3.13-stdlib
167s   python3-all python3-click python3-colorama python3-coloredlogs
167s   python3-cyvcf2 python3-humanfriendly python3-iniconfig python3-numpy
167s   python3-packaging python3-pluggy python3-pytest python3.13
167s   python3.13-minimal
167s 0 upgraded, 22 newly installed, 0 to remove and 0 not upgraded.
167s Need to get 15.8 MB/15.8 MB of archives.
167s After this operation, 64.3 MB of additional disk space will be used.
167s Get:1 /tmp/autopkgtest.KFn35o/1-autopkgtest-satdep.deb autopkgtest-satdep s390x 0 [720 B]
167s Get:2 http://ftpmaster.internal/ubuntu plucky/main s390x libpython3.13-minimal s390x 3.13.0-2 [877 kB]
168s Get:3 http://ftpmaster.internal/ubuntu plucky/main s390x python3.13-minimal s390x 3.13.0-2 [2172 kB]
168s Get:4 http://ftpmaster.internal/ubuntu plucky/main s390x libblas3 s390x 3.12.0-3build2 [238 kB]
168s Get:5 http://ftpmaster.internal/ubuntu plucky/main s390x libdeflate0 s390x 1.22-1 [46.1 kB]
168s Get:6 http://ftpmaster.internal/ubuntu plucky/main s390x libgfortran5 s390x 14.2.0-8ubuntu1 [587 kB]
168s Get:7 http://ftpmaster.internal/ubuntu plucky/universe s390x libhtscodecs2 s390x 1.6.1-1 [91.1 kB]
168s Get:8 http://ftpmaster.internal/ubuntu plucky/universe s390x libhts3t64 s390x 1.20+ds-1 [470 kB]
168s Get:9 http://ftpmaster.internal/ubuntu plucky/main s390x liblapack3 s390x 3.12.0-3build2 [2953 kB]
169s Get:10 http://ftpmaster.internal/ubuntu plucky/main s390x libpython3.13-stdlib s390x 3.13.0-2 [2086 kB]
169s Get:11 http://ftpmaster.internal/ubuntu plucky/main s390x python3.13 s390x 3.13.0-2 [719 kB]
169s Get:12 http://ftpmaster.internal/ubuntu plucky-proposed/main s390x python3-all s390x 3.12.7-1 [890 B]
169s Get:13 http://ftpmaster.internal/ubuntu plucky/main s390x python3-colorama all 0.4.6-4 [32.1 kB]
169s Get:14 http://ftpmaster.internal/ubuntu plucky/main s390x python3-click all 8.1.7-2 [79.5 kB]
169s Get:15 http://ftpmaster.internal/ubuntu plucky/universe s390x python3-humanfriendly all 10.0-6 [70.8 kB]
169s Get:16 http://ftpmaster.internal/ubuntu plucky/universe s390x python3-coloredlogs all 15.0.1-1 [38.2 kB]
169s Get:17 http://ftpmaster.internal/ubuntu plucky/main s390x python3-numpy s390x 1:1.26.4+ds-11build1 [4113 kB]
170s Get:18 http://ftpmaster.internal/ubuntu plucky/universe s390x python3-cyvcf2 s390x 0.31.1-2 [932 kB]
170s Get:19 http://ftpmaster.internal/ubuntu plucky/universe s390x python3-iniconfig all 1.1.1-2 [6024 B]
170s Get:20 http://ftpmaster.internal/ubuntu plucky/main s390x python3-packaging all 24.1-1 [41.4 kB]
170s Get:21 http://ftpmaster.internal/ubuntu plucky/universe s390x python3-pluggy all 1.5.0-1 [21.0 kB]
170s Get:22 http://ftpmaster.internal/ubuntu plucky/universe s390x python3-pytest all 8.3.3-1 [251 kB]
170s Fetched 15.8 MB in 3s (5464 kB/s)
170s Selecting previously unselected package libpython3.13-minimal:s390x.
170s (Reading database ... 
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(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 55517 files and directories currently installed.)
170s Preparing to unpack .../00-libpython3.13-minimal_3.13.0-2_s390x.deb ...
170s Unpacking libpython3.13-minimal:s390x (3.13.0-2) ...
170s Selecting previously unselected package python3.13-minimal.
170s Preparing to unpack .../01-python3.13-minimal_3.13.0-2_s390x.deb ...
170s Unpacking python3.13-minimal (3.13.0-2) ...
170s Selecting previously unselected package libblas3:s390x.
170s Preparing to unpack .../02-libblas3_3.12.0-3build2_s390x.deb ...
170s Unpacking libblas3:s390x (3.12.0-3build2) ...
170s Selecting previously unselected package libdeflate0:s390x.
171s Preparing to unpack .../03-libdeflate0_1.22-1_s390x.deb ...
171s Unpacking libdeflate0:s390x (1.22-1) ...
171s Selecting previously unselected package libgfortran5:s390x.
171s Preparing to unpack .../04-libgfortran5_14.2.0-8ubuntu1_s390x.deb ...
171s Unpacking libgfortran5:s390x (14.2.0-8ubuntu1) ...
171s Selecting previously unselected package libhtscodecs2:s390x.
171s Preparing to unpack .../05-libhtscodecs2_1.6.1-1_s390x.deb ...
171s Unpacking libhtscodecs2:s390x (1.6.1-1) ...
171s Selecting previously unselected package libhts3t64:s390x.
171s Preparing to unpack .../06-libhts3t64_1.20+ds-1_s390x.deb ...
171s Unpacking libhts3t64:s390x (1.20+ds-1) ...
171s Selecting previously unselected package liblapack3:s390x.
171s Preparing to unpack .../07-liblapack3_3.12.0-3build2_s390x.deb ...
171s Unpacking liblapack3:s390x (3.12.0-3build2) ...
171s Selecting previously unselected package libpython3.13-stdlib:s390x.
171s Preparing to unpack .../08-libpython3.13-stdlib_3.13.0-2_s390x.deb ...
171s Unpacking libpython3.13-stdlib:s390x (3.13.0-2) ...
171s Selecting previously unselected package python3.13.
171s Preparing to unpack .../09-python3.13_3.13.0-2_s390x.deb ...
171s Unpacking python3.13 (3.13.0-2) ...
171s Selecting previously unselected package python3-all.
171s Preparing to unpack .../10-python3-all_3.12.7-1_s390x.deb ...
171s Unpacking python3-all (3.12.7-1) ...
171s Selecting previously unselected package python3-colorama.
171s Preparing to unpack .../11-python3-colorama_0.4.6-4_all.deb ...
171s Unpacking python3-colorama (0.4.6-4) ...
171s Selecting previously unselected package python3-click.
171s Preparing to unpack .../12-python3-click_8.1.7-2_all.deb ...
171s Unpacking python3-click (8.1.7-2) ...
171s Selecting previously unselected package python3-humanfriendly.
171s Preparing to unpack .../13-python3-humanfriendly_10.0-6_all.deb ...
171s Unpacking python3-humanfriendly (10.0-6) ...
171s Selecting previously unselected package python3-coloredlogs.
171s Preparing to unpack .../14-python3-coloredlogs_15.0.1-1_all.deb ...
171s Unpacking python3-coloredlogs (15.0.1-1) ...
171s Selecting previously unselected package python3-numpy.
171s Preparing to unpack .../15-python3-numpy_1%3a1.26.4+ds-11build1_s390x.deb ...
171s Unpacking python3-numpy (1:1.26.4+ds-11build1) ...
171s Selecting previously unselected package python3-cyvcf2.
171s Preparing to unpack .../16-python3-cyvcf2_0.31.1-2_s390x.deb ...
171s Unpacking python3-cyvcf2 (0.31.1-2) ...
171s Selecting previously unselected package python3-iniconfig.
171s Preparing to unpack .../17-python3-iniconfig_1.1.1-2_all.deb ...
171s Unpacking python3-iniconfig (1.1.1-2) ...
171s Selecting previously unselected package python3-packaging.
171s Preparing to unpack .../18-python3-packaging_24.1-1_all.deb ...
171s Unpacking python3-packaging (24.1-1) ...
171s Selecting previously unselected package python3-pluggy.
171s Preparing to unpack .../19-python3-pluggy_1.5.0-1_all.deb ...
171s Unpacking python3-pluggy (1.5.0-1) ...
171s Selecting previously unselected package python3-pytest.
171s Preparing to unpack .../20-python3-pytest_8.3.3-1_all.deb ...
171s Unpacking python3-pytest (8.3.3-1) ...
171s Selecting previously unselected package autopkgtest-satdep.
171s Preparing to unpack .../21-1-autopkgtest-satdep.deb ...
171s Unpacking autopkgtest-satdep (0) ...
171s Setting up libhtscodecs2:s390x (1.6.1-1) ...
171s Setting up python3-iniconfig (1.1.1-2) ...
171s Setting up python3-colorama (0.4.6-4) ...
171s Setting up libdeflate0:s390x (1.22-1) ...
171s Setting up python3-click (8.1.7-2) ...
172s Setting up libpython3.13-minimal:s390x (3.13.0-2) ...
172s Setting up libblas3:s390x (3.12.0-3build2) ...
172s update-alternatives: using /usr/lib/s390x-linux-gnu/blas/libblas.so.3 to provide /usr/lib/s390x-linux-gnu/libblas.so.3 (libblas.so.3-s390x-linux-gnu) in auto mode
172s Setting up python3-packaging (24.1-1) ...
172s Setting up python3-humanfriendly (10.0-6) ...
172s Setting up libgfortran5:s390x (14.2.0-8ubuntu1) ...
172s Setting up python3-pluggy (1.5.0-1) ...
172s Setting up libhts3t64:s390x (1.20+ds-1) ...
172s Setting up python3.13-minimal (3.13.0-2) ...
173s Setting up python3-coloredlogs (15.0.1-1) ...
173s Setting up libpython3.13-stdlib:s390x (3.13.0-2) ...
173s Setting up liblapack3:s390x (3.12.0-3build2) ...
173s update-alternatives: using /usr/lib/s390x-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/s390x-linux-gnu/liblapack.so.3 (liblapack.so.3-s390x-linux-gnu) in auto mode
173s Setting up python3.13 (3.13.0-2) ...
174s Setting up python3-pytest (8.3.3-1) ...
175s Setting up python3-all (3.12.7-1) ...
175s Setting up python3-numpy (1:1.26.4+ds-11build1) ...
179s Setting up python3-cyvcf2 (0.31.1-2) ...
179s Setting up autopkgtest-satdep (0) ...
179s Processing triggers for systemd (256.5-2ubuntu4) ...
179s Processing triggers for man-db (2.12.1-3) ...
179s Processing triggers for libc-bin (2.40-1ubuntu3) ...
182s (Reading database ... 57517 files and directories currently installed.)
182s Removing autopkgtest-satdep (0) ...
182s autopkgtest [10:47:54]: test run-unit-test: [-----------------------
183s Testing with python3.13 in /tmp/autopkgtest.KFn35o/autopkgtest_tmp:
183s ============================= test session starts ==============================
183s platform linux -- Python 3.13.0, pytest-8.3.3, pluggy-1.5.0 -- /usr/bin/python3.13
183s cachedir: .pytest_cache
183s rootdir: /tmp/autopkgtest.KFn35o/autopkgtest_tmp
183s plugins: typeguard-4.4.1
183s collecting ... collected 0 items / 4 errors
183s 
183s ==================================== ERRORS ====================================
183s __________________ ERROR collecting cyvcf2/tests/test_cli.py ___________________
183s ImportError while importing test module '/tmp/autopkgtest.KFn35o/autopkgtest_tmp/cyvcf2/tests/test_cli.py'.
183s Hint: make sure your test modules/packages have valid Python names.
183s Traceback:
183s /usr/lib/python3.13/importlib/__init__.py:88: in import_module
183s     return _bootstrap._gcd_import(name[level:], package, level)
183s cyvcf2/__init__.py:1: in <module>
183s     from .cyvcf2 import (VCF, Variant, Writer, r_ as r_unphased, par_relatedness,
183s E   ModuleNotFoundError: No module named 'cyvcf2.cyvcf2'
183s __________________ ERROR collecting cyvcf2/tests/test_hemi.py __________________
183s ImportError while importing test module '/tmp/autopkgtest.KFn35o/autopkgtest_tmp/cyvcf2/tests/test_hemi.py'.
183s Hint: make sure your test modules/packages have valid Python names.
183s Traceback:
183s /usr/lib/python3.13/importlib/__init__.py:88: in import_module
183s     return _bootstrap._gcd_import(name[level:], package, level)
183s cyvcf2/__init__.py:1: in <module>
183s     from .cyvcf2 import (VCF, Variant, Writer, r_ as r_unphased, par_relatedness,
183s E   ModuleNotFoundError: No module named 'cyvcf2.cyvcf2'
183s _________________ ERROR collecting cyvcf2/tests/test_reader.py _________________
183s ImportError while importing test module '/tmp/autopkgtest.KFn35o/autopkgtest_tmp/cyvcf2/tests/test_reader.py'.
183s Hint: make sure your test modules/packages have valid Python names.
183s Traceback:
183s /usr/lib/python3.13/importlib/__init__.py:88: in import_module
183s     return _bootstrap._gcd_import(name[level:], package, level)
183s cyvcf2/__init__.py:1: in <module>
183s     from .cyvcf2 import (VCF, Variant, Writer, r_ as r_unphased, par_relatedness,
183s E   ModuleNotFoundError: No module named 'cyvcf2.cyvcf2'
183s _________________ ERROR collecting cyvcf2/tests/test_writer.py _________________
183s ImportError while importing test module '/tmp/autopkgtest.KFn35o/autopkgtest_tmp/cyvcf2/tests/test_writer.py'.
183s Hint: make sure your test modules/packages have valid Python names.
183s Traceback:
183s /usr/lib/python3.13/importlib/__init__.py:88: in import_module
183s     return _bootstrap._gcd_import(name[level:], package, level)
183s cyvcf2/__init__.py:1: in <module>
183s     from .cyvcf2 import (VCF, Variant, Writer, r_ as r_unphased, par_relatedness,
183s E   ModuleNotFoundError: No module named 'cyvcf2.cyvcf2'
183s =========================== short test summary info ============================
183s ERROR cyvcf2/tests/test_cli.py
183s ERROR cyvcf2/tests/test_hemi.py
183s ERROR cyvcf2/tests/test_reader.py
183s ERROR cyvcf2/tests/test_writer.py
183s !!!!!!!!!!!!!!!!!!! Interrupted: 4 errors during collection !!!!!!!!!!!!!!!!!!!!
183s ============================== 4 errors in 0.09s ===============================
183s autopkgtest [10:47:55]: test run-unit-test: -----------------------]
184s autopkgtest [10:47:56]: test run-unit-test:  - - - - - - - - - - results - - - - - - - - - -
184s run-unit-test        FAIL non-zero exit status 2
184s autopkgtest [10:47:56]: test autodep8-python3: preparing testbed
295s autopkgtest [10:49:47]: testbed dpkg architecture: s390x
295s autopkgtest [10:49:47]: testbed apt version: 2.9.8
295s autopkgtest [10:49:47]: @@@@@@@@@@@@@@@@@@@@ test bed setup
296s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease [73.9 kB]
296s Get:2 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse Sources [15.3 kB]
296s Get:3 http://ftpmaster.internal/ubuntu plucky-proposed/main Sources [76.4 kB]
296s Get:4 http://ftpmaster.internal/ubuntu plucky-proposed/restricted Sources [7016 B]
296s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/universe Sources [849 kB]
296s Get:6 http://ftpmaster.internal/ubuntu plucky-proposed/main s390x Packages [85.8 kB]
296s Get:7 http://ftpmaster.internal/ubuntu plucky-proposed/universe s390x Packages [565 kB]
296s Get:8 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse s390x Packages [16.6 kB]
297s Fetched 1689 kB in 1s (1935 kB/s)
297s Reading package lists...
299s Reading package lists...
299s Building dependency tree...
299s Reading state information...
299s Calculating upgrade...
299s The following NEW packages will be installed:
299s   python3.13-gdbm
299s The following packages will be upgraded:
299s   libgpgme11t64 libpython3-stdlib python3 python3-gdbm python3-minimal
299s 5 upgraded, 1 newly installed, 0 to remove and 0 not upgraded.
299s Need to get 252 kB of archives.
299s After this operation, 98.3 kB of additional disk space will be used.
299s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed/main s390x python3-minimal s390x 3.12.7-1 [27.4 kB]
299s Get:2 http://ftpmaster.internal/ubuntu plucky-proposed/main s390x python3 s390x 3.12.7-1 [24.0 kB]
299s Get:3 http://ftpmaster.internal/ubuntu plucky-proposed/main s390x libpython3-stdlib s390x 3.12.7-1 [10.0 kB]
299s Get:4 http://ftpmaster.internal/ubuntu plucky/main s390x python3.13-gdbm s390x 3.13.0-2 [31.0 kB]
299s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/main s390x python3-gdbm s390x 3.12.7-1 [8642 B]
299s Get:6 http://ftpmaster.internal/ubuntu plucky/main s390x libgpgme11t64 s390x 1.23.2-5ubuntu4 [151 kB]
300s Fetched 252 kB in 0s (609 kB/s)
300s (Reading database ... 
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(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 55510 files and directories currently installed.)
300s Preparing to unpack .../python3-minimal_3.12.7-1_s390x.deb ...
300s Unpacking python3-minimal (3.12.7-1) over (3.12.6-0ubuntu1) ...
300s Setting up python3-minimal (3.12.7-1) ...
300s (Reading database ... 
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(Reading database ... 95%
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(Reading database ... 55510 files and directories currently installed.)
300s Preparing to unpack .../python3_3.12.7-1_s390x.deb ...
300s Unpacking python3 (3.12.7-1) over (3.12.6-0ubuntu1) ...
300s Preparing to unpack .../libpython3-stdlib_3.12.7-1_s390x.deb ...
300s Unpacking libpython3-stdlib:s390x (3.12.7-1) over (3.12.6-0ubuntu1) ...
300s Selecting previously unselected package python3.13-gdbm.
300s Preparing to unpack .../python3.13-gdbm_3.13.0-2_s390x.deb ...
300s Unpacking python3.13-gdbm (3.13.0-2) ...
300s Preparing to unpack .../python3-gdbm_3.12.7-1_s390x.deb ...
300s Unpacking python3-gdbm:s390x (3.12.7-1) over (3.12.6-1ubuntu1) ...
300s Preparing to unpack .../libgpgme11t64_1.23.2-5ubuntu4_s390x.deb ...
300s Unpacking libgpgme11t64:s390x (1.23.2-5ubuntu4) over (1.18.0-4.1ubuntu4) ...
300s Setting up libgpgme11t64:s390x (1.23.2-5ubuntu4) ...
300s Setting up python3.13-gdbm (3.13.0-2) ...
300s Setting up libpython3-stdlib:s390x (3.12.7-1) ...
300s Setting up python3 (3.12.7-1) ...
300s Setting up python3-gdbm:s390x (3.12.7-1) ...
300s Processing triggers for man-db (2.12.1-3) ...
301s Processing triggers for libc-bin (2.40-1ubuntu3) ...
301s Reading package lists...
301s Building dependency tree...
301s Reading state information...
301s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
301s Hit:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease
301s Hit:2 http://ftpmaster.internal/ubuntu plucky InRelease
302s Hit:3 http://ftpmaster.internal/ubuntu plucky-updates InRelease
302s Hit:4 http://ftpmaster.internal/ubuntu plucky-security InRelease
302s Reading package lists...
302s Reading package lists...
302s Building dependency tree...
302s Reading state information...
303s Calculating upgrade...
303s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
303s Reading package lists...
303s Building dependency tree...
303s Reading state information...
303s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
308s Reading package lists...
308s Building dependency tree...
308s Reading state information...
308s Starting pkgProblemResolver with broken count: 0
308s Starting 2 pkgProblemResolver with broken count: 0
308s Done
308s The following additional packages will be installed:
308s   libblas3 libdeflate0 libgfortran5 libhts3t64 libhtscodecs2 liblapack3
308s   libpython3.13-minimal libpython3.13-stdlib python3-all python3-click
308s   python3-colorama python3-coloredlogs python3-cyvcf2 python3-humanfriendly
308s   python3-numpy python3.13 python3.13-minimal
308s Suggested packages:
308s   gcc gfortran python-numpy-doc python3-dev python3-pytest python3.13-venv
308s   python3.13-doc binfmt-support
308s The following NEW packages will be installed:
308s   autopkgtest-satdep libblas3 libdeflate0 libgfortran5 libhts3t64
308s   libhtscodecs2 liblapack3 libpython3.13-minimal libpython3.13-stdlib
308s   python3-all python3-click python3-colorama python3-coloredlogs
308s   python3-cyvcf2 python3-humanfriendly python3-numpy python3.13
308s   python3.13-minimal
308s 0 upgraded, 18 newly installed, 0 to remove and 0 not upgraded.
308s Need to get 15.5 MB/15.5 MB of archives.
308s After this operation, 62.7 MB of additional disk space will be used.
308s Get:1 /tmp/autopkgtest.KFn35o/2-autopkgtest-satdep.deb autopkgtest-satdep s390x 0 [720 B]
309s Get:2 http://ftpmaster.internal/ubuntu plucky/main s390x libpython3.13-minimal s390x 3.13.0-2 [877 kB]
309s Get:3 http://ftpmaster.internal/ubuntu plucky/main s390x python3.13-minimal s390x 3.13.0-2 [2172 kB]
309s Get:4 http://ftpmaster.internal/ubuntu plucky/main s390x libblas3 s390x 3.12.0-3build2 [238 kB]
309s Get:5 http://ftpmaster.internal/ubuntu plucky/main s390x libdeflate0 s390x 1.22-1 [46.1 kB]
309s Get:6 http://ftpmaster.internal/ubuntu plucky/main s390x libgfortran5 s390x 14.2.0-8ubuntu1 [587 kB]
309s Get:7 http://ftpmaster.internal/ubuntu plucky/universe s390x libhtscodecs2 s390x 1.6.1-1 [91.1 kB]
309s Get:8 http://ftpmaster.internal/ubuntu plucky/universe s390x libhts3t64 s390x 1.20+ds-1 [470 kB]
310s Get:9 http://ftpmaster.internal/ubuntu plucky/main s390x liblapack3 s390x 3.12.0-3build2 [2953 kB]
310s Get:10 http://ftpmaster.internal/ubuntu plucky/main s390x libpython3.13-stdlib s390x 3.13.0-2 [2086 kB]
310s Get:11 http://ftpmaster.internal/ubuntu plucky/main s390x python3.13 s390x 3.13.0-2 [719 kB]
310s Get:12 http://ftpmaster.internal/ubuntu plucky-proposed/main s390x python3-all s390x 3.12.7-1 [890 B]
310s Get:13 http://ftpmaster.internal/ubuntu plucky/main s390x python3-colorama all 0.4.6-4 [32.1 kB]
310s Get:14 http://ftpmaster.internal/ubuntu plucky/main s390x python3-click all 8.1.7-2 [79.5 kB]
310s Get:15 http://ftpmaster.internal/ubuntu plucky/universe s390x python3-humanfriendly all 10.0-6 [70.8 kB]
310s Get:16 http://ftpmaster.internal/ubuntu plucky/universe s390x python3-coloredlogs all 15.0.1-1 [38.2 kB]
310s Get:17 http://ftpmaster.internal/ubuntu plucky/main s390x python3-numpy s390x 1:1.26.4+ds-11build1 [4113 kB]
310s Get:18 http://ftpmaster.internal/ubuntu plucky/universe s390x python3-cyvcf2 s390x 0.31.1-2 [932 kB]
311s Fetched 15.5 MB in 2s (7351 kB/s)
311s Selecting previously unselected package libpython3.13-minimal:s390x.
311s (Reading database ... 
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(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 55517 files and directories currently installed.)
311s Preparing to unpack .../00-libpython3.13-minimal_3.13.0-2_s390x.deb ...
311s Unpacking libpython3.13-minimal:s390x (3.13.0-2) ...
311s Selecting previously unselected package python3.13-minimal.
311s Preparing to unpack .../01-python3.13-minimal_3.13.0-2_s390x.deb ...
311s Unpacking python3.13-minimal (3.13.0-2) ...
311s Selecting previously unselected package libblas3:s390x.
311s Preparing to unpack .../02-libblas3_3.12.0-3build2_s390x.deb ...
311s Unpacking libblas3:s390x (3.12.0-3build2) ...
311s Selecting previously unselected package libdeflate0:s390x.
311s Preparing to unpack .../03-libdeflate0_1.22-1_s390x.deb ...
311s Unpacking libdeflate0:s390x (1.22-1) ...
311s Selecting previously unselected package libgfortran5:s390x.
311s Preparing to unpack .../04-libgfortran5_14.2.0-8ubuntu1_s390x.deb ...
311s Unpacking libgfortran5:s390x (14.2.0-8ubuntu1) ...
311s Selecting previously unselected package libhtscodecs2:s390x.
311s Preparing to unpack .../05-libhtscodecs2_1.6.1-1_s390x.deb ...
311s Unpacking libhtscodecs2:s390x (1.6.1-1) ...
311s Selecting previously unselected package libhts3t64:s390x.
311s Preparing to unpack .../06-libhts3t64_1.20+ds-1_s390x.deb ...
311s Unpacking libhts3t64:s390x (1.20+ds-1) ...
311s Selecting previously unselected package liblapack3:s390x.
311s Preparing to unpack .../07-liblapack3_3.12.0-3build2_s390x.deb ...
311s Unpacking liblapack3:s390x (3.12.0-3build2) ...
311s Selecting previously unselected package libpython3.13-stdlib:s390x.
311s Preparing to unpack .../08-libpython3.13-stdlib_3.13.0-2_s390x.deb ...
311s Unpacking libpython3.13-stdlib:s390x (3.13.0-2) ...
311s Selecting previously unselected package python3.13.
311s Preparing to unpack .../09-python3.13_3.13.0-2_s390x.deb ...
311s Unpacking python3.13 (3.13.0-2) ...
311s Selecting previously unselected package python3-all.
311s Preparing to unpack .../10-python3-all_3.12.7-1_s390x.deb ...
311s Unpacking python3-all (3.12.7-1) ...
311s Selecting previously unselected package python3-colorama.
311s Preparing to unpack .../11-python3-colorama_0.4.6-4_all.deb ...
311s Unpacking python3-colorama (0.4.6-4) ...
311s Selecting previously unselected package python3-click.
311s Preparing to unpack .../12-python3-click_8.1.7-2_all.deb ...
311s Unpacking python3-click (8.1.7-2) ...
311s Selecting previously unselected package python3-humanfriendly.
311s Preparing to unpack .../13-python3-humanfriendly_10.0-6_all.deb ...
311s Unpacking python3-humanfriendly (10.0-6) ...
311s Selecting previously unselected package python3-coloredlogs.
311s Preparing to unpack .../14-python3-coloredlogs_15.0.1-1_all.deb ...
311s Unpacking python3-coloredlogs (15.0.1-1) ...
311s Selecting previously unselected package python3-numpy.
311s Preparing to unpack .../15-python3-numpy_1%3a1.26.4+ds-11build1_s390x.deb ...
311s Unpacking python3-numpy (1:1.26.4+ds-11build1) ...
311s Selecting previously unselected package python3-cyvcf2.
311s Preparing to unpack .../16-python3-cyvcf2_0.31.1-2_s390x.deb ...
311s Unpacking python3-cyvcf2 (0.31.1-2) ...
311s Selecting previously unselected package autopkgtest-satdep.
311s Preparing to unpack .../17-2-autopkgtest-satdep.deb ...
311s Unpacking autopkgtest-satdep (0) ...
311s Setting up libhtscodecs2:s390x (1.6.1-1) ...
311s Setting up python3-colorama (0.4.6-4) ...
312s Setting up libdeflate0:s390x (1.22-1) ...
312s Setting up python3-click (8.1.7-2) ...
312s Setting up libpython3.13-minimal:s390x (3.13.0-2) ...
312s Setting up libblas3:s390x (3.12.0-3build2) ...
312s update-alternatives: using /usr/lib/s390x-linux-gnu/blas/libblas.so.3 to provide /usr/lib/s390x-linux-gnu/libblas.so.3 (libblas.so.3-s390x-linux-gnu) in auto mode
312s Setting up python3-humanfriendly (10.0-6) ...
312s Setting up libgfortran5:s390x (14.2.0-8ubuntu1) ...
312s Setting up libhts3t64:s390x (1.20+ds-1) ...
312s Setting up python3.13-minimal (3.13.0-2) ...
313s Setting up python3-coloredlogs (15.0.1-1) ...
313s Setting up libpython3.13-stdlib:s390x (3.13.0-2) ...
313s Setting up liblapack3:s390x (3.12.0-3build2) ...
313s update-alternatives: using /usr/lib/s390x-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/s390x-linux-gnu/liblapack.so.3 (liblapack.so.3-s390x-linux-gnu) in auto mode
313s Setting up python3.13 (3.13.0-2) ...
314s Setting up python3-all (3.12.7-1) ...
314s Setting up python3-numpy (1:1.26.4+ds-11build1) ...
318s Setting up python3-cyvcf2 (0.31.1-2) ...
318s Setting up autopkgtest-satdep (0) ...
318s Processing triggers for systemd (256.5-2ubuntu4) ...
318s Processing triggers for man-db (2.12.1-3) ...
319s Processing triggers for libc-bin (2.40-1ubuntu3) ...
320s (Reading database ... 57353 files and directories currently installed.)
320s Removing autopkgtest-satdep (0) ...
323s autopkgtest [10:50:15]: test autodep8-python3: set -e ; for py in $(py3versions -r 2>/dev/null) ; do cd "$AUTOPKGTEST_TMP" ; echo "Testing with $py:" ; $py -c "import cyvcf2; print(cyvcf2)" ; done
323s autopkgtest [10:50:15]: test autodep8-python3: [-----------------------
323s Testing with python3.13:
323s Traceback (most recent call last):
323s   File "<string>", line 1, in <module>
323s     import cyvcf2; print(cyvcf2)
323s     ^^^^^^^^^^^^^
323s   File "/usr/lib/python3/dist-packages/cyvcf2/__init__.py", line 1, in <module>
323s     from .cyvcf2 import (VCF, Variant, Writer, r_ as r_unphased, par_relatedness,
323s                          par_het)
323s ModuleNotFoundError: No module named 'cyvcf2.cyvcf2'
323s autopkgtest [10:50:15]: test autodep8-python3: -----------------------]
324s autopkgtest [10:50:16]: test autodep8-python3:  - - - - - - - - - - results - - - - - - - - - -
324s autodep8-python3     FAIL non-zero exit status 1
326s autopkgtest [10:50:18]: @@@@@@@@@@@@@@@@@@@@ summary
326s run-unit-test        FAIL non-zero exit status 2
326s autodep8-python3     FAIL non-zero exit status 1
341s nova [W] Using flock in prodstack6-s390x
341s Creating nova instance adt-plucky-s390x-cyvcf2-20241113-104451-juju-7f2275-prod-proposed-migration-environment-15-3f588155-18bc-4c53-9946-4eccb02d6be8 from image adt/ubuntu-plucky-s390x-server-20241113.img (UUID e740277e-1f72-40ae-bfbe-46030537c71c)...
341s nova [W] Using flock in prodstack6-s390x
341s Creating nova instance adt-plucky-s390x-cyvcf2-20241113-104451-juju-7f2275-prod-proposed-migration-environment-15-3f588155-18bc-4c53-9946-4eccb02d6be8 from image adt/ubuntu-plucky-s390x-server-20241113.img (UUID e740277e-1f72-40ae-bfbe-46030537c71c)...