0s autopkgtest [12:25:46]: starting date and time: 2025-03-13 12:25:46+0000 0s autopkgtest [12:25:46]: git checkout: 325255d2 Merge branch 'pin-any-arch' into 'ubuntu/production' 0s autopkgtest [12:25:46]: host juju-7f2275-prod-proposed-migration-environment-20; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.eukc8qn4/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:cctbx --apt-upgrade cctbx --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 '--env=ADT_TEST_TRIGGERS=cctbx/2024.10+ds2+~3.22.1+ds1-4build2' -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest-s390x --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-20@bos03-s390x-29.secgroup --name adt-plucky-s390x-cctbx-20250313-104327-juju-7f2275-prod-proposed-migration-environment-20-664f4011-9de0-43bc-8e50-5bb7c9458efd --image adt/ubuntu-plucky-s390x-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-20 --net-id=net_prod-proposed-migration-s390x -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,keyserver.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com,radosgw.ps5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/ 56s autopkgtest [12:26:42]: testbed dpkg architecture: s390x 56s autopkgtest [12:26:42]: testbed apt version: 2.9.32ubuntu1 57s autopkgtest [12:26:43]: @@@@@@@@@@@@@@@@@@@@ test bed setup 57s autopkgtest [12:26:43]: testbed release detected to be: None 57s autopkgtest [12:26:43]: updating testbed package index (apt update) 58s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease [110 kB] 58s Hit:2 http://ftpmaster.internal/ubuntu plucky InRelease 58s Hit:3 http://ftpmaster.internal/ubuntu plucky-updates InRelease 58s Hit:4 http://ftpmaster.internal/ubuntu plucky-security InRelease 58s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/main Sources [46.1 kB] 58s Get:6 http://ftpmaster.internal/ubuntu plucky-proposed/restricted Sources [2420 B] 58s Get:7 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse Sources [11.5 kB] 58s Get:8 http://ftpmaster.internal/ubuntu plucky-proposed/universe Sources [384 kB] 58s Get:9 http://ftpmaster.internal/ubuntu plucky-proposed/main s390x Packages [66.4 kB] 58s Get:10 http://ftpmaster.internal/ubuntu plucky-proposed/universe s390x Packages [290 kB] 58s Get:11 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse s390x Packages [2512 B] 58s Fetched 913 kB in 1s (1144 kB/s) 59s Reading package lists... 59s Reading package lists... 60s Building dependency tree... 60s Reading state information... 60s Calculating upgrade... 60s Calculating upgrade... 60s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 60s Reading package lists... 60s Building dependency tree... 60s Reading state information... 60s Solving dependencies... 60s The following packages will be REMOVED: 60s linux-image-6.11.0-8-generic* 60s 0 upgraded, 0 newly installed, 1 to remove and 0 not upgraded. 60s After this operation, 10.5 MB disk space will be freed. 60s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 81495 files and directories currently installed.) 60s Removing linux-image-6.11.0-8-generic (6.11.0-8.8) ... 61s I: /boot/vmlinuz.old is now a symlink to vmlinuz-6.14.0-7-generic 61s I: /boot/initrd.img.old is now a symlink to initrd.img-6.14.0-7-generic 61s /etc/kernel/postrm.d/initramfs-tools: 61s update-initramfs: Deleting /boot/initrd.img-6.11.0-8-generic 61s /etc/kernel/postrm.d/zz-zipl: 61s Using config file '/etc/zipl.conf' 61s Building bootmap in '/boot' 61s Adding IPL section 'ubuntu' (default) 61s Preparing boot device for LD-IPL: vda (0000). 61s Done. 61s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 81491 files and directories currently installed.) 61s Purging configuration files for linux-image-6.11.0-8-generic (6.11.0-8.8) ... 61s rmdir: failed to remove '/lib/modules/6.11.0-8-generic': Directory not empty 61s autopkgtest [12:26:47]: upgrading testbed (apt dist-upgrade and autopurge) 61s Reading package lists... 61s Building dependency tree... 61s Reading state information... 61s Calculating upgrade...Starting pkgProblemResolver with broken count: 0 61s Starting 2 pkgProblemResolver with broken count: 0 61s Done 61s Entering ResolveByKeep 62s 62s Calculating upgrade... 62s The following packages were automatically installed and are no longer required: 62s libnsl2 libpython3.12-minimal libpython3.12-stdlib libpython3.12t64 62s linux-headers-6.11.0-8 linux-headers-6.11.0-8-generic 62s linux-modules-6.11.0-8-generic linux-tools-6.11.0-8 62s linux-tools-6.11.0-8-generic 62s Use 'sudo apt autoremove' to remove them. 62s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 62s Reading package lists... 62s Building dependency tree... 62s Reading state information... 62s Starting pkgProblemResolver with broken count: 0 62s Starting 2 pkgProblemResolver with broken count: 0 62s Done 62s Solving dependencies... 62s The following packages will be REMOVED: 62s libnsl2* libpython3.12-minimal* libpython3.12-stdlib* libpython3.12t64* 62s linux-headers-6.11.0-8* linux-headers-6.11.0-8-generic* 62s linux-modules-6.11.0-8-generic* linux-tools-6.11.0-8* 62s linux-tools-6.11.0-8-generic* 62s 0 upgraded, 0 newly installed, 9 to remove and 0 not upgraded. 62s After this operation, 167 MB disk space will be freed. 62s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 81491 files and directories currently installed.) 63s Removing linux-tools-6.11.0-8-generic (6.11.0-8.8) ... 63s Removing linux-tools-6.11.0-8 (6.11.0-8.8) ... 63s Removing libpython3.12t64:s390x (3.12.9-1) ... 63s Removing libpython3.12-stdlib:s390x (3.12.9-1) ... 63s Removing libnsl2:s390x (1.3.0-3build3) ... 63s Removing libpython3.12-minimal:s390x (3.12.9-1) ... 63s Removing linux-headers-6.11.0-8-generic (6.11.0-8.8) ... 63s Removing linux-headers-6.11.0-8 (6.11.0-8.8) ... 63s Removing linux-modules-6.11.0-8-generic (6.11.0-8.8) ... 63s Processing triggers for libc-bin (2.41-1ubuntu1) ... 64s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 56391 files and directories currently installed.) 64s Purging configuration files for libpython3.12-minimal:s390x (3.12.9-1) ... 64s Purging configuration files for linux-modules-6.11.0-8-generic (6.11.0-8.8) ... 64s autopkgtest [12:26:50]: rebooting testbed after setup commands that affected boot 82s autopkgtest [12:27:08]: testbed running kernel: Linux 6.14.0-7-generic #7-Ubuntu SMP Fri Feb 28 10:57:32 UTC 2025 84s autopkgtest [12:27:10]: @@@@@@@@@@@@@@@@@@@@ apt-source cctbx 88s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed/universe cctbx 2024.10+ds2+~3.22.1+ds1-4build2 (dsc) [4106 B] 88s Get:2 http://ftpmaster.internal/ubuntu plucky-proposed/universe cctbx 2024.10+ds2+~3.22.1+ds1-4build2 (tar) [378 kB] 88s Get:3 http://ftpmaster.internal/ubuntu plucky-proposed/universe cctbx 2024.10+ds2+~3.22.1+ds1-4build2 (tar) [23.9 MB] 88s Get:4 http://ftpmaster.internal/ubuntu plucky-proposed/universe cctbx 2024.10+ds2+~3.22.1+ds1-4build2 (diff) [418 kB] 88s gpgv: Signature made Tue Mar 4 14:45:06 2025 UTC 88s gpgv: using RSA key 25E3FF2D7F469DBE7D0D4E50AFCFEC8E669CE1C2 88s gpgv: Can't check signature: No public key 88s dpkg-source: warning: cannot verify inline signature for ./cctbx_2024.10+ds2+~3.22.1+ds1-4build2.dsc: no acceptable signature found 90s autopkgtest [12:27:16]: testing package cctbx version 2024.10+ds2+~3.22.1+ds1-4build2 91s autopkgtest [12:27:17]: build not needed 97s autopkgtest [12:27:23]: test cctbx: preparing testbed 97s Reading package lists... 97s Building dependency tree... 97s Reading state information... 97s Starting pkgProblemResolver with broken count: 0 97s Starting 2 pkgProblemResolver with broken count: 0 97s Done 97s The following NEW packages will be installed: 97s adwaita-icon-theme at-spi2-common blt cpp cpp-14 cpp-14-s390x-linux-gnu 97s cpp-s390x-linux-gnu dconf-gsettings-backend dconf-service fontconfig 97s fontconfig-config fonts-dejavu-core fonts-dejavu-mono fonts-font-awesome 97s fonts-lato fonts-lyx g++ g++-14 g++-14-s390x-linux-gnu g++-s390x-linux-gnu 97s gcc gcc-14 gcc-14-s390x-linux-gnu gcc-s390x-linux-gnu gtk-update-icon-cache 97s hicolor-icon-theme libaec0 libann-cctbx-dev libann-cctbx0 libantlr3c-3.4-0 97s libasan8 libatk-bridge2.0-0t64 libatk1.0-0t64 libatspi2.0-0t64 97s libavahi-client3 libavahi-common-data libavahi-common3 libblas3 97s libboost-numpy1.83.0 libboost-python-dev libboost-python1.83-dev 97s libboost-python1.83.0 libboost-thread1.83.0 libboost-timer1.83.0 97s libboost1.83-dev libcairo-gobject2 libcairo2 libcbf1t64 libcc1-0 97s libccp4-data libccp4-dev libccp4c0t64 libccp4f0t64 libcctbx-dev libcctbx0 97s libcolord2 libcups2t64 libdatrie1 libdconf1 libdeflate0 97s libdouble-conversion3 libegl-mesa0 libegl1 libepoxy0 libexpat1-dev 97s libfontconfig1 libfreetype6 libgbm1 libgcc-14-dev libgdk-pixbuf-2.0-0 97s libgdk-pixbuf2.0-common libgfortran5 libgl1 libgl1-mesa-dri libglew2.2 97s libglu1-mesa libglvnd0 libglx-mesa0 libglx0 libgomp1 libgraphite2-3 97s libgtk-3-0t64 libgtk-3-common libharfbuzz0b libhdf5-310 libhdf5-hl-310 97s libice6 libimagequant0 libinput-bin libinput10 libisl23 libitm1 libjbig0 97s libjpeg-turbo8 libjpeg8 libjs-jquery libjs-jquery-ui libjs-sphinxdoc 97s libjs-underscore liblapack3 liblbfgsb0 liblcms2-2 liblzf1 libmd4c0 97s libmmdb2-0 libmpc3 libmtdev1t64 libnetcdf22 libnotify4 libopengl0 97s libopenjp2-7 libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 97s libpcre2-16-0 libpcre2-32-0 libpixman-1-0 libpython3-dev libpython3.13-dev 97s libqhull-r8.0 libqt5core5t64 libqt5dbus5t64 libqt5designer5 libqt5gui5t64 97s libqt5help5 libqt5network5t64 libqt5opengl5t64 libqt5printsupport5t64 97s libqt5sql5t64 libqt5test5t64 libqt5widgets5t64 libqt5xml5t64 libraqm0 97s libsharpyuv0 libsm6 libssm2 libstdc++-14-dev libsz2 libtcl8.6 libthai-data 97s libthai0 libtiff6 libtk8.6 libubsan1 libvulkan1 libwacom-common libwacom9 97s libwayland-client0 libwayland-cursor0 libwayland-egl1 libwayland-server0 97s libwebp7 libwebpdemux2 libwebpmux3 libwxbase3.2-1t64 libwxgtk-gl3.2-1t64 97s libwxgtk3.2-1t64 libx11-xcb1 libxcb-dri3-0 libxcb-glx0 libxcb-icccm4 97s libxcb-image0 libxcb-keysyms1 libxcb-present0 libxcb-randr0 97s libxcb-render-util0 libxcb-render0 libxcb-shape0 libxcb-shm0 libxcb-sync1 97s libxcb-util1 libxcb-xfixes0 libxcb-xinerama0 libxcb-xinput0 libxcb-xkb1 97s libxcomposite1 libxcursor1 libxdamage1 libxfixes3 libxft2 libxi6 97s libxinerama1 libxkbcommon-x11-0 libxrandr2 libxrender1 libxshmfence1 97s libxslt1.1 libxss1 libxtst6 libxxf86vm1 mesa-libgallium pymol-data 97s python-matplotlib-data python3-all python3-brotli python3-cctbx 97s python3-contourpy python3-cycler python3-dateutil python3-decorator 97s python3-dev python3-flexcache python3-flexparser python3-fonttools 97s python3-fs python3-h5py python3-h5py-serial python3-hdf5plugin 97s python3-iniconfig python3-kiwisolver python3-legacy-cgi python3-lxml 97s python3-lz4 python3-matplotlib python3-mpmath python3-mrcfile 97s python3-natsort python3-numpy python3-numpy-dev python3-nxmx python3-opengl 97s python3-ordered-set python3-packaging python3-pil python3-pil.imagetk 97s python3-pint python3-platformdirs python3-pluggy python3-procrunner 97s python3-pycbf python3-pymol python3-pyqt5 python3-pyqt5.qtopengl 97s python3-pyqt5.sip python3-pytest python3-scipy python3-six python3-sympy 97s python3-tk python3-tqdm python3-ufolib2 python3-wxgtk4.0 python3.12-tk 97s python3.13-dev python3.13-tk sphinx-rtd-theme-common tk8.6-blt2.5 97s unicode-data x11-common zlib1g-dev 98s 0 upgraded, 250 newly installed, 0 to remove and 0 not upgraded. 98s Need to get 237 MB of archives. 98s After this operation, 1113 MB of additional disk space will be used. 98s Get:1 http://ftpmaster.internal/ubuntu plucky/main s390x fonts-lato all 2.015-1 [2781 kB] 98s Get:2 http://ftpmaster.internal/ubuntu plucky/main s390x python3-numpy-dev s390x 1:2.2.3+ds-4 [147 kB] 98s Get:3 http://ftpmaster.internal/ubuntu plucky/main s390x libblas3 s390x 3.12.1-2 [252 kB] 98s Get:4 http://ftpmaster.internal/ubuntu plucky/main s390x libgfortran5 s390x 15-20250222-0ubuntu1 [620 kB] 98s Get:5 http://ftpmaster.internal/ubuntu plucky/main s390x liblapack3 s390x 3.12.1-2 [2971 kB] 98s Get:6 http://ftpmaster.internal/ubuntu plucky/main s390x python3-numpy s390x 1:2.2.3+ds-4 [4396 kB] 98s Get:7 http://ftpmaster.internal/ubuntu plucky/main s390x libgdk-pixbuf2.0-common all 2.42.12+dfsg-2 [8004 B] 98s Get:8 http://ftpmaster.internal/ubuntu plucky/main s390x libjpeg-turbo8 s390x 2.1.5-3ubuntu2 [147 kB] 98s Get:9 http://ftpmaster.internal/ubuntu plucky/main s390x libjpeg8 s390x 8c-2ubuntu11 [2146 B] 98s Get:10 http://ftpmaster.internal/ubuntu plucky/main s390x libdeflate0 s390x 1.23-1 [46.1 kB] 98s Get:11 http://ftpmaster.internal/ubuntu plucky/main s390x libjbig0 s390x 2.1-6.1ubuntu2 [33.1 kB] 98s Get:12 http://ftpmaster.internal/ubuntu plucky/main s390x libsharpyuv0 s390x 1.5.0-0.1 [16.7 kB] 98s Get:13 http://ftpmaster.internal/ubuntu plucky/main s390x libwebp7 s390x 1.5.0-0.1 [210 kB] 98s Get:14 http://ftpmaster.internal/ubuntu plucky/main s390x libtiff6 s390x 4.5.1+git230720-4ubuntu4 [217 kB] 98s Get:15 http://ftpmaster.internal/ubuntu plucky/main s390x libgdk-pixbuf-2.0-0 s390x 2.42.12+dfsg-2 [154 kB] 98s Get:16 http://ftpmaster.internal/ubuntu plucky/main s390x gtk-update-icon-cache s390x 4.17.5+ds-3ubuntu1 [53.2 kB] 98s Get:17 http://ftpmaster.internal/ubuntu plucky/main s390x hicolor-icon-theme all 0.18-2 [13.3 kB] 98s Get:18 http://ftpmaster.internal/ubuntu plucky/main s390x adwaita-icon-theme all 48~beta-3 [578 kB] 98s Get:19 http://ftpmaster.internal/ubuntu plucky/main s390x at-spi2-common all 2.55.90-1 [9072 B] 98s Get:20 http://ftpmaster.internal/ubuntu plucky/main s390x libtcl8.6 s390x 8.6.16+dfsg-1 [1034 kB] 98s Get:21 http://ftpmaster.internal/ubuntu plucky/main s390x libfreetype6 s390x 2.13.3+dfsg-1 [431 kB] 98s Get:22 http://ftpmaster.internal/ubuntu plucky/main s390x fonts-dejavu-mono all 2.37-8 [502 kB] 99s Get:23 http://ftpmaster.internal/ubuntu plucky/main s390x fonts-dejavu-core all 2.37-8 [835 kB] 99s Get:24 http://ftpmaster.internal/ubuntu plucky/main s390x fontconfig-config s390x 2.15.0-2ubuntu1 [37.5 kB] 99s Get:25 http://ftpmaster.internal/ubuntu plucky/main s390x libfontconfig1 s390x 2.15.0-2ubuntu1 [150 kB] 99s Get:26 http://ftpmaster.internal/ubuntu plucky/main s390x libxrender1 s390x 1:0.9.10-1.1build1 [20.4 kB] 99s Get:27 http://ftpmaster.internal/ubuntu plucky/main s390x libxft2 s390x 2.3.6-1build1 [49.6 kB] 99s Get:28 http://ftpmaster.internal/ubuntu plucky/main s390x x11-common all 1:7.7+23ubuntu3 [21.7 kB] 99s Get:29 http://ftpmaster.internal/ubuntu plucky/main s390x libxss1 s390x 1:1.2.3-1build3 [7396 B] 99s Get:30 http://ftpmaster.internal/ubuntu plucky/main s390x libtk8.6 s390x 8.6.16-1 [830 kB] 99s Get:31 http://ftpmaster.internal/ubuntu plucky/main s390x tk8.6-blt2.5 s390x 2.5.3+dfsg-8 [657 kB] 99s Get:32 http://ftpmaster.internal/ubuntu plucky/main s390x blt s390x 2.5.3+dfsg-8 [4826 B] 99s Get:33 http://ftpmaster.internal/ubuntu plucky/main s390x libisl23 s390x 0.27-1 [704 kB] 99s Get:34 http://ftpmaster.internal/ubuntu plucky/main s390x libmpc3 s390x 1.3.1-1build2 [57.8 kB] 99s Get:35 http://ftpmaster.internal/ubuntu plucky/main s390x cpp-14-s390x-linux-gnu s390x 14.2.0-17ubuntu3 [9572 kB] 99s Get:36 http://ftpmaster.internal/ubuntu plucky/main s390x cpp-14 s390x 14.2.0-17ubuntu3 [1028 B] 99s Get:37 http://ftpmaster.internal/ubuntu plucky/main s390x cpp-s390x-linux-gnu s390x 4:14.2.0-1ubuntu1 [5556 B] 99s Get:38 http://ftpmaster.internal/ubuntu plucky/main s390x cpp s390x 4:14.2.0-1ubuntu1 [22.4 kB] 99s Get:39 http://ftpmaster.internal/ubuntu plucky/main s390x libdconf1 s390x 0.40.0-5 [40.0 kB] 99s Get:40 http://ftpmaster.internal/ubuntu plucky/main s390x dconf-service s390x 0.40.0-5 [28.4 kB] 99s Get:41 http://ftpmaster.internal/ubuntu plucky/main s390x dconf-gsettings-backend s390x 0.40.0-5 [22.8 kB] 99s Get:42 http://ftpmaster.internal/ubuntu plucky/main s390x fontconfig s390x 2.15.0-2ubuntu1 [191 kB] 99s Get:43 http://ftpmaster.internal/ubuntu plucky/main s390x fonts-font-awesome all 5.0.10+really4.7.0~dfsg-4.1 [516 kB] 99s Get:44 http://ftpmaster.internal/ubuntu plucky/universe s390x fonts-lyx all 2.4.3-1 [171 kB] 99s Get:45 http://ftpmaster.internal/ubuntu plucky/main s390x libcc1-0 s390x 15-20250222-0ubuntu1 [49.2 kB] 99s Get:46 http://ftpmaster.internal/ubuntu plucky/main s390x libgomp1 s390x 15-20250222-0ubuntu1 [152 kB] 99s Get:47 http://ftpmaster.internal/ubuntu plucky/main s390x libitm1 s390x 15-20250222-0ubuntu1 [31.2 kB] 99s Get:48 http://ftpmaster.internal/ubuntu plucky/main s390x libasan8 s390x 15-20250222-0ubuntu1 [2970 kB] 99s Get:49 http://ftpmaster.internal/ubuntu plucky/main s390x libubsan1 s390x 15-20250222-0ubuntu1 [1212 kB] 99s Get:50 http://ftpmaster.internal/ubuntu plucky/main s390x libgcc-14-dev s390x 14.2.0-17ubuntu3 [1037 kB] 99s Get:51 http://ftpmaster.internal/ubuntu plucky/main s390x gcc-14-s390x-linux-gnu s390x 14.2.0-17ubuntu3 [18.7 MB] 100s Get:52 http://ftpmaster.internal/ubuntu plucky/main s390x gcc-14 s390x 14.2.0-17ubuntu3 [526 kB] 100s Get:53 http://ftpmaster.internal/ubuntu plucky/main s390x gcc-s390x-linux-gnu s390x 4:14.2.0-1ubuntu1 [1204 B] 100s Get:54 http://ftpmaster.internal/ubuntu plucky/main s390x gcc s390x 4:14.2.0-1ubuntu1 [5004 B] 100s Get:55 http://ftpmaster.internal/ubuntu plucky/main s390x libstdc++-14-dev s390x 14.2.0-17ubuntu3 [2611 kB] 100s Get:56 http://ftpmaster.internal/ubuntu plucky/main s390x g++-14-s390x-linux-gnu s390x 14.2.0-17ubuntu3 [11.0 MB] 100s Get:57 http://ftpmaster.internal/ubuntu plucky/main s390x g++-14 s390x 14.2.0-17ubuntu3 [21.8 kB] 100s Get:58 http://ftpmaster.internal/ubuntu plucky/main s390x g++-s390x-linux-gnu s390x 4:14.2.0-1ubuntu1 [956 B] 100s Get:59 http://ftpmaster.internal/ubuntu plucky/main s390x g++ s390x 4:14.2.0-1ubuntu1 [1080 B] 100s Get:60 http://ftpmaster.internal/ubuntu plucky/universe s390x libaec0 s390x 1.1.3-1 [25.7 kB] 100s Get:61 http://ftpmaster.internal/ubuntu plucky/universe s390x libann-cctbx0 s390x 1.1.2+doc-9build1 [36.2 kB] 100s Get:62 http://ftpmaster.internal/ubuntu plucky/universe s390x libann-cctbx-dev s390x 1.1.2+doc-9build1 [48.1 kB] 100s Get:63 http://ftpmaster.internal/ubuntu plucky/universe s390x libantlr3c-3.4-0 s390x 3.4+dfsg-4build2 [51.3 kB] 100s Get:64 http://ftpmaster.internal/ubuntu plucky/main s390x libatk1.0-0t64 s390x 2.55.90-1 [54.9 kB] 100s Get:65 http://ftpmaster.internal/ubuntu plucky/main s390x libxi6 s390x 2:1.8.2-1 [35.4 kB] 100s Get:66 http://ftpmaster.internal/ubuntu plucky/main s390x libatspi2.0-0t64 s390x 2.55.90-1 [83.8 kB] 100s Get:67 http://ftpmaster.internal/ubuntu plucky/main s390x libatk-bridge2.0-0t64 s390x 2.55.90-1 [66.7 kB] 100s Get:68 http://ftpmaster.internal/ubuntu plucky/main s390x libavahi-common-data s390x 0.8-16ubuntu1 [30.9 kB] 100s Get:69 http://ftpmaster.internal/ubuntu plucky/main s390x libavahi-common3 s390x 0.8-16ubuntu1 [23.5 kB] 100s Get:70 http://ftpmaster.internal/ubuntu plucky/main s390x libavahi-client3 s390x 0.8-16ubuntu1 [26.3 kB] 100s Get:71 http://ftpmaster.internal/ubuntu plucky/main s390x libboost-python1.83.0 s390x 1.83.0-4.1ubuntu1 [325 kB] 100s Get:72 http://ftpmaster.internal/ubuntu plucky/universe s390x libboost-numpy1.83.0 s390x 1.83.0-4.1ubuntu1 [243 kB] 100s Get:73 http://ftpmaster.internal/ubuntu plucky/main s390x libboost1.83-dev s390x 1.83.0-4.1ubuntu1 [10.7 MB] 101s Get:74 http://ftpmaster.internal/ubuntu plucky/main s390x libexpat1-dev s390x 2.6.4-1 [146 kB] 101s Get:75 http://ftpmaster.internal/ubuntu plucky/main s390x zlib1g-dev s390x 1:1.3.dfsg+really1.3.1-1ubuntu1 [898 kB] 101s Get:76 http://ftpmaster.internal/ubuntu plucky/main s390x libpython3.13-dev s390x 3.13.2-1 [5596 kB] 101s Get:77 http://ftpmaster.internal/ubuntu plucky/main s390x libpython3-dev s390x 3.13.2-2 [10.7 kB] 101s Get:78 http://ftpmaster.internal/ubuntu plucky/main s390x python3.13-dev s390x 3.13.2-1 [508 kB] 101s Get:79 http://ftpmaster.internal/ubuntu plucky/main s390x libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [328 kB] 101s Get:80 http://ftpmaster.internal/ubuntu plucky/main s390x libjs-underscore all 1.13.4~dfsg+~1.11.4-3 [118 kB] 101s Get:81 http://ftpmaster.internal/ubuntu plucky/main s390x libjs-sphinxdoc all 8.1.3-4 [30.9 kB] 101s Get:82 http://ftpmaster.internal/ubuntu plucky/main s390x python3-dev s390x 3.13.2-2 [26.7 kB] 101s Get:83 http://ftpmaster.internal/ubuntu plucky/universe s390x libboost-python1.83-dev s390x 1.83.0-4.1ubuntu1 [336 kB] 101s Get:84 http://ftpmaster.internal/ubuntu plucky/universe s390x libboost-python-dev s390x 1.83.0.2ubuntu1 [4518 B] 101s Get:85 http://ftpmaster.internal/ubuntu plucky/main s390x libboost-thread1.83.0 s390x 1.83.0-4.1ubuntu1 [279 kB] 101s Get:86 http://ftpmaster.internal/ubuntu plucky/universe s390x libboost-timer1.83.0 s390x 1.83.0-4.1ubuntu1 [241 kB] 101s Get:87 http://ftpmaster.internal/ubuntu plucky/main s390x libpixman-1-0 s390x 0.44.0-3 [201 kB] 101s Get:88 http://ftpmaster.internal/ubuntu plucky/main s390x libxcb-render0 s390x 1.17.0-2 [17.0 kB] 101s Get:89 http://ftpmaster.internal/ubuntu plucky/main s390x libxcb-shm0 s390x 1.17.0-2 [5862 B] 101s Get:90 http://ftpmaster.internal/ubuntu plucky/main s390x libcairo2 s390x 1.18.2-2 [580 kB] 101s Get:91 http://ftpmaster.internal/ubuntu plucky/main s390x libcairo-gobject2 s390x 1.18.2-2 [127 kB] 101s Get:92 http://ftpmaster.internal/ubuntu plucky/universe s390x libsz2 s390x 1.1.3-1 [5442 B] 101s Get:93 http://ftpmaster.internal/ubuntu plucky/universe s390x libhdf5-310 s390x 1.14.5+repack-3 [1477 kB] 101s Get:94 http://ftpmaster.internal/ubuntu plucky/universe s390x libcbf1t64 s390x 0.9.7+dfsg1-5build1 [391 kB] 101s Get:95 http://ftpmaster.internal/ubuntu plucky/universe s390x libccp4-data all 8.0.0-4 [65.2 kB] 101s Get:96 http://ftpmaster.internal/ubuntu plucky/universe s390x libccp4c0t64 s390x 8.0.0-4 [104 kB] 101s Get:97 http://ftpmaster.internal/ubuntu plucky/universe s390x libmmdb2-0 s390x 2.0.22-1 [351 kB] 101s Get:98 http://ftpmaster.internal/ubuntu plucky/universe s390x libccp4f0t64 s390x 8.0.0-4 [224 kB] 101s Get:99 http://ftpmaster.internal/ubuntu plucky/universe s390x libccp4-dev s390x 8.0.0-4 [42.4 kB] 101s Get:100 http://ftpmaster.internal/ubuntu plucky-proposed/universe s390x libcctbx0 s390x 2024.10+ds2+~3.22.1+ds1-4build2 [2003 kB] 101s Get:101 http://ftpmaster.internal/ubuntu plucky-proposed/universe s390x libcctbx-dev s390x 2024.10+ds2+~3.22.1+ds1-4build2 [1192 kB] 101s Get:102 http://ftpmaster.internal/ubuntu plucky/main s390x liblcms2-2 s390x 2.16-2 [175 kB] 102s Get:103 http://ftpmaster.internal/ubuntu plucky/main s390x libcolord2 s390x 1.4.7-3 [149 kB] 102s Get:104 http://ftpmaster.internal/ubuntu plucky/main s390x libcups2t64 s390x 2.4.11-0ubuntu2 [282 kB] 102s Get:105 http://ftpmaster.internal/ubuntu plucky/main s390x libdatrie1 s390x 0.2.13-3build1 [20.6 kB] 102s Get:106 http://ftpmaster.internal/ubuntu plucky/universe s390x libdouble-conversion3 s390x 3.3.1-1 [43.3 kB] 102s Get:107 http://ftpmaster.internal/ubuntu plucky/main s390x libwayland-server0 s390x 1.23.1-3 [37.3 kB] 102s Get:108 http://ftpmaster.internal/ubuntu plucky/main s390x libx11-xcb1 s390x 2:1.8.10-2 [7954 B] 102s Get:109 http://ftpmaster.internal/ubuntu plucky/main s390x libxcb-dri3-0 s390x 1.17.0-2 [7616 B] 102s Get:110 http://ftpmaster.internal/ubuntu plucky/main s390x libxcb-present0 s390x 1.17.0-2 [6244 B] 102s Get:111 http://ftpmaster.internal/ubuntu plucky/main s390x libxcb-randr0 s390x 1.17.0-2 [19.2 kB] 102s Get:112 http://ftpmaster.internal/ubuntu plucky/main s390x libxcb-sync1 s390x 1.17.0-2 [9488 B] 102s Get:113 http://ftpmaster.internal/ubuntu plucky/main s390x libxcb-xfixes0 s390x 1.17.0-2 [10.5 kB] 102s Get:114 http://ftpmaster.internal/ubuntu plucky/main s390x libxshmfence1 s390x 1.3-1build5 [4772 B] 102s Get:115 http://ftpmaster.internal/ubuntu plucky/main s390x mesa-libgallium s390x 25.0.1-2ubuntu1 [8056 kB] 102s Get:116 http://ftpmaster.internal/ubuntu plucky/main s390x libgbm1 s390x 25.0.1-2ubuntu1 [34.5 kB] 102s Get:117 http://ftpmaster.internal/ubuntu plucky/main s390x libwayland-client0 s390x 1.23.1-3 [28.2 kB] 102s Get:118 http://ftpmaster.internal/ubuntu plucky/main s390x libegl-mesa0 s390x 25.0.1-2ubuntu1 [126 kB] 102s Get:119 http://ftpmaster.internal/ubuntu plucky/main s390x libepoxy0 s390x 1.5.10-2 [222 kB] 102s Get:120 http://ftpmaster.internal/ubuntu plucky/main s390x libvulkan1 s390x 1.4.304.0-1 [147 kB] 102s Get:121 http://ftpmaster.internal/ubuntu plucky/main s390x libgl1-mesa-dri s390x 25.0.1-2ubuntu1 [35.4 kB] 102s Get:122 http://ftpmaster.internal/ubuntu plucky/main s390x libglvnd0 s390x 1.7.0-1build1 [110 kB] 102s Get:123 http://ftpmaster.internal/ubuntu plucky/main s390x libxcb-glx0 s390x 1.17.0-2 [26.0 kB] 102s Get:124 http://ftpmaster.internal/ubuntu plucky/main s390x libxxf86vm1 s390x 1:1.1.4-1build4 [9630 B] 102s Get:125 http://ftpmaster.internal/ubuntu plucky/main s390x libglx-mesa0 s390x 25.0.1-2ubuntu1 [161 kB] 103s Get:126 http://ftpmaster.internal/ubuntu plucky/main s390x libglx0 s390x 1.7.0-1build1 [32.2 kB] 103s Get:127 http://ftpmaster.internal/ubuntu plucky/main s390x libgl1 s390x 1.7.0-1build1 [142 kB] 103s Get:128 http://ftpmaster.internal/ubuntu plucky/universe s390x libglew2.2 s390x 2.2.0-4build1 [195 kB] 103s Get:129 http://ftpmaster.internal/ubuntu plucky/main s390x libgraphite2-3 s390x 1.3.14-2ubuntu1 [79.8 kB] 103s Get:130 http://ftpmaster.internal/ubuntu plucky/main s390x libharfbuzz0b s390x 10.2.0-1 [538 kB] 103s Get:131 http://ftpmaster.internal/ubuntu plucky/main s390x libthai-data all 0.1.29-2build1 [158 kB] 103s Get:132 http://ftpmaster.internal/ubuntu plucky/main s390x libthai0 s390x 0.1.29-2build1 [20.7 kB] 103s Get:133 http://ftpmaster.internal/ubuntu plucky/main s390x libpango-1.0-0 s390x 1.56.1-1 [253 kB] 103s Get:134 http://ftpmaster.internal/ubuntu plucky/main s390x libpangoft2-1.0-0 s390x 1.56.1-1 [50.3 kB] 103s Get:135 http://ftpmaster.internal/ubuntu plucky/main s390x libpangocairo-1.0-0 s390x 1.56.1-1 [28.3 kB] 103s Get:136 http://ftpmaster.internal/ubuntu plucky/main s390x libwayland-cursor0 s390x 1.23.1-3 [11.5 kB] 103s Get:137 http://ftpmaster.internal/ubuntu plucky/main s390x libwayland-egl1 s390x 1.23.1-3 [6078 B] 103s Get:138 http://ftpmaster.internal/ubuntu plucky/main s390x libxcomposite1 s390x 1:0.4.6-1 [6588 B] 103s Get:139 http://ftpmaster.internal/ubuntu plucky/main s390x libxfixes3 s390x 1:6.0.0-2build1 [11.3 kB] 103s Get:140 http://ftpmaster.internal/ubuntu plucky/main s390x libxcursor1 s390x 1:1.2.3-1 [23.4 kB] 103s Get:141 http://ftpmaster.internal/ubuntu plucky/main s390x libxdamage1 s390x 1:1.1.6-1build1 [6156 B] 103s Get:142 http://ftpmaster.internal/ubuntu plucky/main s390x libxinerama1 s390x 2:1.1.4-3build1 [6476 B] 103s Get:143 http://ftpmaster.internal/ubuntu plucky/main s390x libxrandr2 s390x 2:1.5.4-1 [20.8 kB] 103s Get:144 http://ftpmaster.internal/ubuntu plucky/main s390x libgtk-3-common all 3.24.48-3ubuntu1 [1424 kB] 103s Get:145 http://ftpmaster.internal/ubuntu plucky/main s390x libgtk-3-0t64 s390x 3.24.48-3ubuntu1 [2949 kB] 103s Get:146 http://ftpmaster.internal/ubuntu plucky/universe s390x libhdf5-hl-310 s390x 1.14.5+repack-3 [61.0 kB] 103s Get:147 http://ftpmaster.internal/ubuntu plucky/main s390x libice6 s390x 2:1.1.1-1 [45.4 kB] 103s Get:148 http://ftpmaster.internal/ubuntu plucky/main s390x libimagequant0 s390x 2.18.0-1build1 [43.3 kB] 103s Get:149 http://ftpmaster.internal/ubuntu plucky/main s390x libwacom-common all 2.14.0-1 [103 kB] 103s Get:150 http://ftpmaster.internal/ubuntu plucky/main s390x libwacom9 s390x 2.14.0-1 [27.1 kB] 103s Get:151 http://ftpmaster.internal/ubuntu plucky/main s390x libinput-bin s390x 1.27.1-1 [23.3 kB] 103s Get:152 http://ftpmaster.internal/ubuntu plucky/main s390x libmtdev1t64 s390x 1.1.7-1 [15.6 kB] 103s Get:153 http://ftpmaster.internal/ubuntu plucky/main s390x libinput10 s390x 1.27.1-1 [139 kB] 103s Get:154 http://ftpmaster.internal/ubuntu plucky/universe s390x libjs-jquery-ui all 1.13.2+dfsg-1 [252 kB] 103s Get:155 http://ftpmaster.internal/ubuntu plucky/universe s390x liblbfgsb0 s390x 3.0+dfsg.4-1build1 [32.4 kB] 103s Get:156 http://ftpmaster.internal/ubuntu plucky/universe s390x liblzf1 s390x 3.6-4 [7020 B] 103s Get:157 http://ftpmaster.internal/ubuntu plucky/universe s390x libmd4c0 s390x 0.5.2-2 [47.7 kB] 104s Get:158 http://ftpmaster.internal/ubuntu plucky/universe s390x libnetcdf22 s390x 1:4.9.3-1 [533 kB] 104s Get:159 http://ftpmaster.internal/ubuntu plucky/main s390x libnotify4 s390x 0.8.4-1 [25.9 kB] 104s Get:160 http://ftpmaster.internal/ubuntu plucky/main s390x libpcre2-16-0 s390x 10.45-1 [259 kB] 104s Get:161 http://ftpmaster.internal/ubuntu plucky/main s390x libpcre2-32-0 s390x 10.45-1 [245 kB] 104s Get:162 http://ftpmaster.internal/ubuntu plucky/universe s390x libqhull-r8.0 s390x 2020.2-6build1 [199 kB] 104s Get:163 http://ftpmaster.internal/ubuntu plucky/universe s390x libqt5core5t64 s390x 5.15.15+dfsg-4ubuntu1 [2242 kB] 104s Get:164 http://ftpmaster.internal/ubuntu plucky/universe s390x libqt5dbus5t64 s390x 5.15.15+dfsg-4ubuntu1 [240 kB] 104s Get:165 http://ftpmaster.internal/ubuntu plucky/main s390x libegl1 s390x 1.7.0-1build1 [31.8 kB] 104s Get:166 http://ftpmaster.internal/ubuntu plucky/universe s390x libqt5network5t64 s390x 5.15.15+dfsg-4ubuntu1 [788 kB] 104s Get:167 http://ftpmaster.internal/ubuntu plucky/main s390x libsm6 s390x 2:1.2.4-1 [18.4 kB] 104s Get:168 http://ftpmaster.internal/ubuntu plucky/main s390x libxcb-icccm4 s390x 0.4.2-1 [11.4 kB] 104s Get:169 http://ftpmaster.internal/ubuntu plucky/main s390x libxcb-util1 s390x 0.4.1-1 [10.7 kB] 104s Get:170 http://ftpmaster.internal/ubuntu plucky/main s390x libxcb-image0 s390x 0.4.0-2build1 [12.0 kB] 104s Get:171 http://ftpmaster.internal/ubuntu plucky/main s390x libxcb-keysyms1 s390x 0.4.1-1 [8908 B] 104s Get:172 http://ftpmaster.internal/ubuntu plucky/main s390x libxcb-render-util0 s390x 0.3.10-1 [10.3 kB] 104s Get:173 http://ftpmaster.internal/ubuntu plucky/main s390x libxcb-shape0 s390x 1.17.0-2 [6202 B] 104s Get:174 http://ftpmaster.internal/ubuntu plucky/main s390x libxcb-xinerama0 s390x 1.17.0-2 [5430 B] 104s Get:175 http://ftpmaster.internal/ubuntu plucky/main s390x libxcb-xinput0 s390x 1.17.0-2 [35.8 kB] 104s Get:176 http://ftpmaster.internal/ubuntu plucky/main s390x libxcb-xkb1 s390x 1.17.0-2 [34.5 kB] 104s Get:177 http://ftpmaster.internal/ubuntu plucky/main s390x libxkbcommon-x11-0 s390x 1.7.0-2 [14.8 kB] 104s Get:178 http://ftpmaster.internal/ubuntu plucky/universe s390x libqt5gui5t64 s390x 5.15.15+dfsg-4ubuntu1 [4187 kB] 104s Get:179 http://ftpmaster.internal/ubuntu plucky/universe s390x libqt5widgets5t64 s390x 5.15.15+dfsg-4ubuntu1 [2718 kB] 104s Get:180 http://ftpmaster.internal/ubuntu plucky/universe s390x libqt5xml5t64 s390x 5.15.15+dfsg-4ubuntu1 [129 kB] 104s Get:181 http://ftpmaster.internal/ubuntu plucky/universe s390x libqt5designer5 s390x 5.15.15-6build1 [2900 kB] 105s Get:182 http://ftpmaster.internal/ubuntu plucky/universe s390x libqt5sql5t64 s390x 5.15.15+dfsg-4ubuntu1 [130 kB] 105s Get:183 http://ftpmaster.internal/ubuntu plucky/universe s390x libqt5help5 s390x 5.15.15-6build1 [172 kB] 105s Get:184 http://ftpmaster.internal/ubuntu plucky/universe s390x libqt5opengl5t64 s390x 5.15.15+dfsg-4ubuntu1 [156 kB] 105s Get:185 http://ftpmaster.internal/ubuntu plucky/universe s390x libqt5printsupport5t64 s390x 5.15.15+dfsg-4ubuntu1 [218 kB] 105s Get:186 http://ftpmaster.internal/ubuntu plucky/universe s390x libqt5test5t64 s390x 5.15.15+dfsg-4ubuntu1 [156 kB] 105s Get:187 http://ftpmaster.internal/ubuntu plucky/main s390x libraqm0 s390x 0.10.2-1 [15.8 kB] 105s Get:188 http://ftpmaster.internal/ubuntu plucky/universe s390x libssm2 s390x 1.4.0-2build1 [97.8 kB] 105s Get:189 http://ftpmaster.internal/ubuntu plucky/main s390x libwebpdemux2 s390x 1.5.0-0.1 [12.6 kB] 105s Get:190 http://ftpmaster.internal/ubuntu plucky/main s390x libwebpmux3 s390x 1.5.0-0.1 [25.8 kB] 105s Get:191 http://ftpmaster.internal/ubuntu plucky/universe s390x libwxbase3.2-1t64 s390x 3.2.6+dfsg-2ubuntu1 [915 kB] 105s Get:192 http://ftpmaster.internal/ubuntu plucky/main s390x libxtst6 s390x 2:1.2.5-1 [13.5 kB] 105s Get:193 http://ftpmaster.internal/ubuntu plucky/universe s390x libwxgtk3.2-1t64 s390x 3.2.6+dfsg-2ubuntu1 [4737 kB] 106s Get:194 http://ftpmaster.internal/ubuntu plucky/universe s390x libwxgtk-gl3.2-1t64 s390x 3.2.6+dfsg-2ubuntu1 [52.9 kB] 106s Get:195 http://ftpmaster.internal/ubuntu plucky/main s390x libxslt1.1 s390x 1.1.39-0exp1ubuntu2 [169 kB] 106s Get:196 http://ftpmaster.internal/ubuntu plucky/universe s390x pymol-data all 3.0.0+dfsg-3build2 [1394 kB] 106s Get:197 http://ftpmaster.internal/ubuntu plucky/universe s390x python-matplotlib-data all 3.8.3-7build1 [2934 kB] 106s Get:198 http://ftpmaster.internal/ubuntu plucky/main s390x python3-all s390x 3.13.2-2 [886 B] 106s Get:199 http://ftpmaster.internal/ubuntu plucky/universe s390x python3-brotli s390x 1.1.0-2build4 [380 kB] 106s Get:200 http://ftpmaster.internal/ubuntu plucky/main s390x python3-legacy-cgi all 2.6.2-1 [16.6 kB] 106s Get:201 http://ftpmaster.internal/ubuntu plucky/universe s390x python3-pycbf s390x 0.9.7+dfsg1-5build1 [152 kB] 106s Get:202 http://ftpmaster.internal/ubuntu plucky/universe s390x python3-h5py-serial s390x 3.13.0-1 [1185 kB] 106s Get:203 http://ftpmaster.internal/ubuntu plucky/universe s390x python3-h5py all 3.13.0-1 [7978 B] 106s Get:204 http://ftpmaster.internal/ubuntu plucky/universe s390x python3-hdf5plugin all 5.0.0-1 [23.1 kB] 106s Get:205 http://ftpmaster.internal/ubuntu plucky/main s390x python3-dateutil all 2.9.0-3 [80.2 kB] 106s Get:206 http://ftpmaster.internal/ubuntu plucky/main s390x libopenjp2-7 s390x 2.5.0-2ubuntu3 [208 kB] 106s Get:207 http://ftpmaster.internal/ubuntu plucky/main s390x python3-pil s390x 11.1.0-5build1 [498 kB] 106s Get:208 http://ftpmaster.internal/ubuntu plucky/main s390x python3.12-tk s390x 3.12.9-1 [117 kB] 106s Get:209 http://ftpmaster.internal/ubuntu plucky/main s390x python3.13-tk s390x 3.13.2-1 [108 kB] 106s Get:210 http://ftpmaster.internal/ubuntu plucky/main s390x python3-tk s390x 3.13.1-1 [9770 B] 106s Get:211 http://ftpmaster.internal/ubuntu plucky/universe s390x python3-pil.imagetk s390x 11.1.0-5build1 [9668 B] 106s Get:212 http://ftpmaster.internal/ubuntu plucky/universe s390x python3-contourpy s390x 1.3.1-1build1 [197 kB] 106s Get:213 http://ftpmaster.internal/ubuntu plucky/universe s390x python3-cycler all 0.12.1-1 [9716 B] 106s Get:214 http://ftpmaster.internal/ubuntu plucky/main s390x python3-platformdirs all 4.3.6-1 [16.8 kB] 106s Get:215 http://ftpmaster.internal/ubuntu plucky/universe s390x python3-fs all 2.4.16-7 [90.8 kB] 106s Get:216 http://ftpmaster.internal/ubuntu plucky/main s390x python3-lxml s390x 5.3.1-1build1 [1370 kB] 106s Get:217 http://ftpmaster.internal/ubuntu plucky/universe s390x python3-lz4 s390x 4.4.0+dfsg-1build1 [26.6 kB] 106s Get:218 http://ftpmaster.internal/ubuntu plucky/main s390x python3-decorator all 5.1.1-5 [10.1 kB] 106s Get:219 http://ftpmaster.internal/ubuntu plucky/universe s390x python3-scipy s390x 1.14.1-4ubuntu2 [18.0 MB] 107s Get:220 http://ftpmaster.internal/ubuntu plucky/universe s390x python3-mpmath all 1.3.0-1 [425 kB] 107s Get:221 http://ftpmaster.internal/ubuntu plucky/universe s390x python3-sympy all 1.13.3-5 [4229 kB] 107s Get:222 http://ftpmaster.internal/ubuntu plucky/universe s390x python3-ufolib2 all 0.17.0+dfsg1-1 [33.5 kB] 107s Get:223 http://ftpmaster.internal/ubuntu plucky/universe s390x unicode-data all 15.1.0-1 [8878 kB] 108s Get:224 http://ftpmaster.internal/ubuntu plucky/universe s390x python3-fonttools s390x 4.55.3-2build1 [1496 kB] 108s Get:225 http://ftpmaster.internal/ubuntu plucky/universe s390x python3-kiwisolver s390x 1.4.7-3build1 [55.0 kB] 108s Get:226 http://ftpmaster.internal/ubuntu plucky/main s390x python3-packaging all 24.2-1 [51.5 kB] 108s Get:227 http://ftpmaster.internal/ubuntu plucky/universe s390x python3-matplotlib s390x 3.8.3-7build1 [17.3 MB] 108s Get:228 http://ftpmaster.internal/ubuntu plucky/main s390x sphinx-rtd-theme-common all 3.0.2+dfsg-2 [1014 kB] 108s Get:229 http://ftpmaster.internal/ubuntu plucky/universe s390x python3-mrcfile all 1.5.4-2 [116 kB] 108s Get:230 http://ftpmaster.internal/ubuntu plucky/universe s390x python3-natsort all 8.0.2-2 [33.8 kB] 108s Get:231 http://ftpmaster.internal/ubuntu plucky/main s390x python3-flexcache all 0.3-2 [13.4 kB] 108s Get:232 http://ftpmaster.internal/ubuntu plucky/main s390x python3-flexparser all 0.4-1 [43.8 kB] 108s Get:233 http://ftpmaster.internal/ubuntu plucky/main s390x python3-pint all 0.24.4-1 [203 kB] 108s Get:234 http://ftpmaster.internal/ubuntu plucky/universe s390x python3-nxmx all 0.0.4-1 [16.4 kB] 108s Get:235 http://ftpmaster.internal/ubuntu plucky/universe s390x python3-ordered-set all 4.1.0-1 [9778 B] 109s Get:236 http://ftpmaster.internal/ubuntu plucky/universe s390x python3-procrunner all 2.3.3-2 [12.0 kB] 109s Get:237 http://ftpmaster.internal/ubuntu plucky/main s390x libopengl0 s390x 1.7.0-1build1 [48.0 kB] 109s Get:238 http://ftpmaster.internal/ubuntu plucky/main s390x libglu1-mesa s390x 9.0.2-1.1build1 [176 kB] 109s Get:239 http://ftpmaster.internal/ubuntu plucky/universe s390x python3-opengl all 3.1.7+dfsg-1 [612 kB] 109s Get:240 http://ftpmaster.internal/ubuntu plucky/universe s390x python3-pyqt5.sip s390x 12.17.0-1build1 [66.5 kB] 109s Get:241 http://ftpmaster.internal/ubuntu plucky/universe s390x python3-pyqt5 s390x 5.15.11+dfsg-2 [2880 kB] 109s Get:242 http://ftpmaster.internal/ubuntu plucky/universe s390x python3-pyqt5.qtopengl s390x 5.15.11+dfsg-2 [140 kB] 109s Get:243 http://ftpmaster.internal/ubuntu plucky/universe s390x python3-pymol s390x 3.0.0+dfsg-3build2 [4251 kB] 109s Get:244 http://ftpmaster.internal/ubuntu plucky/main s390x python3-six all 1.17.0-1 [13.2 kB] 109s Get:245 http://ftpmaster.internal/ubuntu plucky/universe s390x python3-tqdm all 4.67.1-2 [92.5 kB] 109s Get:246 http://ftpmaster.internal/ubuntu plucky/universe s390x python3-wxgtk4.0 s390x 4.2.2+dfsg-3build1 [7757 kB] 109s Get:247 http://ftpmaster.internal/ubuntu plucky-proposed/universe s390x python3-cctbx s390x 2024.10+ds2+~3.22.1+ds1-4build2 [28.1 MB] 110s Get:248 http://ftpmaster.internal/ubuntu plucky/universe s390x python3-iniconfig all 1.1.1-2 [6024 B] 110s Get:249 http://ftpmaster.internal/ubuntu plucky/universe s390x python3-pluggy all 1.5.0-1 [21.0 kB] 110s Get:250 http://ftpmaster.internal/ubuntu plucky/universe s390x python3-pytest all 8.3.4-1 [252 kB] 111s Fetched 237 MB in 13s (18.4 MB/s) 111s Selecting previously unselected package fonts-lato. 111s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 56389 files and directories currently installed.) 111s Preparing to unpack .../000-fonts-lato_2.015-1_all.deb ... 111s Unpacking fonts-lato (2.015-1) ... 111s Selecting previously unselected package python3-numpy-dev:s390x. 111s Preparing to unpack .../001-python3-numpy-dev_1%3a2.2.3+ds-4_s390x.deb ... 111s Unpacking python3-numpy-dev:s390x (1:2.2.3+ds-4) ... 111s Selecting previously unselected package libblas3:s390x. 111s Preparing to unpack .../002-libblas3_3.12.1-2_s390x.deb ... 111s Unpacking libblas3:s390x (3.12.1-2) ... 111s Selecting previously unselected package libgfortran5:s390x. 111s Preparing to unpack .../003-libgfortran5_15-20250222-0ubuntu1_s390x.deb ... 111s Unpacking libgfortran5:s390x (15-20250222-0ubuntu1) ... 111s Selecting previously unselected package liblapack3:s390x. 111s Preparing to unpack .../004-liblapack3_3.12.1-2_s390x.deb ... 111s Unpacking liblapack3:s390x (3.12.1-2) ... 111s Selecting previously unselected package python3-numpy. 111s Preparing to unpack .../005-python3-numpy_1%3a2.2.3+ds-4_s390x.deb ... 111s Unpacking python3-numpy (1:2.2.3+ds-4) ... 111s Selecting previously unselected package libgdk-pixbuf2.0-common. 111s Preparing to unpack .../006-libgdk-pixbuf2.0-common_2.42.12+dfsg-2_all.deb ... 111s Unpacking libgdk-pixbuf2.0-common (2.42.12+dfsg-2) ... 111s Selecting previously unselected package libjpeg-turbo8:s390x. 111s Preparing to unpack .../007-libjpeg-turbo8_2.1.5-3ubuntu2_s390x.deb ... 111s Unpacking libjpeg-turbo8:s390x (2.1.5-3ubuntu2) ... 112s Selecting previously unselected package libjpeg8:s390x. 112s Preparing to unpack .../008-libjpeg8_8c-2ubuntu11_s390x.deb ... 112s Unpacking libjpeg8:s390x (8c-2ubuntu11) ... 112s Selecting previously unselected package libdeflate0:s390x. 112s Preparing to unpack .../009-libdeflate0_1.23-1_s390x.deb ... 112s Unpacking libdeflate0:s390x (1.23-1) ... 112s Selecting previously unselected package libjbig0:s390x. 112s Preparing to unpack .../010-libjbig0_2.1-6.1ubuntu2_s390x.deb ... 112s Unpacking libjbig0:s390x (2.1-6.1ubuntu2) ... 112s Selecting previously unselected package libsharpyuv0:s390x. 112s Preparing to unpack .../011-libsharpyuv0_1.5.0-0.1_s390x.deb ... 112s Unpacking libsharpyuv0:s390x (1.5.0-0.1) ... 112s Selecting previously unselected package libwebp7:s390x. 112s Preparing to unpack .../012-libwebp7_1.5.0-0.1_s390x.deb ... 112s Unpacking libwebp7:s390x (1.5.0-0.1) ... 112s Selecting previously unselected package libtiff6:s390x. 112s Preparing to unpack .../013-libtiff6_4.5.1+git230720-4ubuntu4_s390x.deb ... 112s Unpacking libtiff6:s390x (4.5.1+git230720-4ubuntu4) ... 112s Selecting previously unselected package libgdk-pixbuf-2.0-0:s390x. 112s Preparing to unpack .../014-libgdk-pixbuf-2.0-0_2.42.12+dfsg-2_s390x.deb ... 112s Unpacking libgdk-pixbuf-2.0-0:s390x (2.42.12+dfsg-2) ... 112s Selecting previously unselected package gtk-update-icon-cache. 112s Preparing to unpack .../015-gtk-update-icon-cache_4.17.5+ds-3ubuntu1_s390x.deb ... 112s No diversion 'diversion of /usr/sbin/update-icon-caches to /usr/sbin/update-icon-caches.gtk2 by libgtk-3-bin', none removed. 112s No diversion 'diversion of /usr/share/man/man8/update-icon-caches.8.gz to /usr/share/man/man8/update-icon-caches.gtk2.8.gz by libgtk-3-bin', none removed. 112s Unpacking gtk-update-icon-cache (4.17.5+ds-3ubuntu1) ... 112s Selecting previously unselected package hicolor-icon-theme. 112s Preparing to unpack .../016-hicolor-icon-theme_0.18-2_all.deb ... 112s Unpacking hicolor-icon-theme (0.18-2) ... 112s Selecting previously unselected package adwaita-icon-theme. 112s Preparing to unpack .../017-adwaita-icon-theme_48~beta-3_all.deb ... 112s Unpacking adwaita-icon-theme (48~beta-3) ... 112s Selecting previously unselected package at-spi2-common. 112s Preparing to unpack .../018-at-spi2-common_2.55.90-1_all.deb ... 112s Unpacking at-spi2-common (2.55.90-1) ... 112s Selecting previously unselected package libtcl8.6:s390x. 112s Preparing to unpack .../019-libtcl8.6_8.6.16+dfsg-1_s390x.deb ... 112s Unpacking libtcl8.6:s390x (8.6.16+dfsg-1) ... 112s Selecting previously unselected package libfreetype6:s390x. 112s Preparing to unpack .../020-libfreetype6_2.13.3+dfsg-1_s390x.deb ... 112s Unpacking libfreetype6:s390x (2.13.3+dfsg-1) ... 112s Selecting previously unselected package fonts-dejavu-mono. 112s Preparing to unpack .../021-fonts-dejavu-mono_2.37-8_all.deb ... 112s Unpacking fonts-dejavu-mono (2.37-8) ... 112s Selecting previously unselected package fonts-dejavu-core. 112s Preparing to unpack .../022-fonts-dejavu-core_2.37-8_all.deb ... 112s Unpacking fonts-dejavu-core (2.37-8) ... 112s Selecting previously unselected package fontconfig-config. 112s Preparing to unpack .../023-fontconfig-config_2.15.0-2ubuntu1_s390x.deb ... 112s Unpacking fontconfig-config (2.15.0-2ubuntu1) ... 112s Selecting previously unselected package libfontconfig1:s390x. 112s Preparing to unpack .../024-libfontconfig1_2.15.0-2ubuntu1_s390x.deb ... 112s Unpacking libfontconfig1:s390x (2.15.0-2ubuntu1) ... 112s Selecting previously unselected package libxrender1:s390x. 112s Preparing to unpack .../025-libxrender1_1%3a0.9.10-1.1build1_s390x.deb ... 112s Unpacking libxrender1:s390x (1:0.9.10-1.1build1) ... 112s Selecting previously unselected package libxft2:s390x. 112s Preparing to unpack .../026-libxft2_2.3.6-1build1_s390x.deb ... 112s Unpacking libxft2:s390x (2.3.6-1build1) ... 112s Selecting previously unselected package x11-common. 112s Preparing to unpack .../027-x11-common_1%3a7.7+23ubuntu3_all.deb ... 112s Unpacking x11-common (1:7.7+23ubuntu3) ... 112s Selecting previously unselected package libxss1:s390x. 112s Preparing to unpack .../028-libxss1_1%3a1.2.3-1build3_s390x.deb ... 112s Unpacking libxss1:s390x (1:1.2.3-1build3) ... 112s Selecting previously unselected package libtk8.6:s390x. 112s Preparing to unpack .../029-libtk8.6_8.6.16-1_s390x.deb ... 112s Unpacking libtk8.6:s390x (8.6.16-1) ... 112s Selecting previously unselected package tk8.6-blt2.5. 112s Preparing to unpack .../030-tk8.6-blt2.5_2.5.3+dfsg-8_s390x.deb ... 112s Unpacking tk8.6-blt2.5 (2.5.3+dfsg-8) ... 112s Selecting previously unselected package blt. 112s Preparing to unpack .../031-blt_2.5.3+dfsg-8_s390x.deb ... 112s Unpacking blt (2.5.3+dfsg-8) ... 112s Selecting previously unselected package libisl23:s390x. 112s Preparing to unpack .../032-libisl23_0.27-1_s390x.deb ... 112s Unpacking libisl23:s390x (0.27-1) ... 112s Selecting previously unselected package libmpc3:s390x. 112s Preparing to unpack .../033-libmpc3_1.3.1-1build2_s390x.deb ... 112s Unpacking libmpc3:s390x (1.3.1-1build2) ... 112s Selecting previously unselected package cpp-14-s390x-linux-gnu. 112s Preparing to unpack .../034-cpp-14-s390x-linux-gnu_14.2.0-17ubuntu3_s390x.deb ... 112s Unpacking cpp-14-s390x-linux-gnu (14.2.0-17ubuntu3) ... 112s Selecting previously unselected package cpp-14. 112s Preparing to unpack .../035-cpp-14_14.2.0-17ubuntu3_s390x.deb ... 112s Unpacking cpp-14 (14.2.0-17ubuntu3) ... 112s Selecting previously unselected package cpp-s390x-linux-gnu. 112s Preparing to unpack .../036-cpp-s390x-linux-gnu_4%3a14.2.0-1ubuntu1_s390x.deb ... 112s Unpacking cpp-s390x-linux-gnu (4:14.2.0-1ubuntu1) ... 112s Selecting previously unselected package cpp. 112s Preparing to unpack .../037-cpp_4%3a14.2.0-1ubuntu1_s390x.deb ... 112s Unpacking cpp (4:14.2.0-1ubuntu1) ... 112s Selecting previously unselected package libdconf1:s390x. 112s Preparing to unpack .../038-libdconf1_0.40.0-5_s390x.deb ... 112s Unpacking libdconf1:s390x (0.40.0-5) ... 112s Selecting previously unselected package dconf-service. 112s Preparing to unpack .../039-dconf-service_0.40.0-5_s390x.deb ... 112s Unpacking dconf-service (0.40.0-5) ... 112s Selecting previously unselected package dconf-gsettings-backend:s390x. 112s Preparing to unpack .../040-dconf-gsettings-backend_0.40.0-5_s390x.deb ... 112s Unpacking dconf-gsettings-backend:s390x (0.40.0-5) ... 112s Selecting previously unselected package fontconfig. 112s Preparing to unpack .../041-fontconfig_2.15.0-2ubuntu1_s390x.deb ... 112s Unpacking fontconfig (2.15.0-2ubuntu1) ... 112s Selecting previously unselected package fonts-font-awesome. 112s Preparing to unpack .../042-fonts-font-awesome_5.0.10+really4.7.0~dfsg-4.1_all.deb ... 112s Unpacking fonts-font-awesome (5.0.10+really4.7.0~dfsg-4.1) ... 112s Selecting previously unselected package fonts-lyx. 112s Preparing to unpack .../043-fonts-lyx_2.4.3-1_all.deb ... 112s Unpacking fonts-lyx (2.4.3-1) ... 112s Selecting previously unselected package libcc1-0:s390x. 112s Preparing to unpack .../044-libcc1-0_15-20250222-0ubuntu1_s390x.deb ... 112s Unpacking libcc1-0:s390x (15-20250222-0ubuntu1) ... 112s Selecting previously unselected package libgomp1:s390x. 112s Preparing to unpack .../045-libgomp1_15-20250222-0ubuntu1_s390x.deb ... 112s Unpacking libgomp1:s390x (15-20250222-0ubuntu1) ... 112s Selecting previously unselected package libitm1:s390x. 112s Preparing to unpack .../046-libitm1_15-20250222-0ubuntu1_s390x.deb ... 112s Unpacking libitm1:s390x (15-20250222-0ubuntu1) ... 112s Selecting previously unselected package libasan8:s390x. 112s Preparing to unpack .../047-libasan8_15-20250222-0ubuntu1_s390x.deb ... 112s Unpacking libasan8:s390x (15-20250222-0ubuntu1) ... 112s Selecting previously unselected package libubsan1:s390x. 112s Preparing to unpack .../048-libubsan1_15-20250222-0ubuntu1_s390x.deb ... 112s Unpacking libubsan1:s390x (15-20250222-0ubuntu1) ... 112s Selecting previously unselected package libgcc-14-dev:s390x. 112s Preparing to unpack .../049-libgcc-14-dev_14.2.0-17ubuntu3_s390x.deb ... 112s Unpacking libgcc-14-dev:s390x (14.2.0-17ubuntu3) ... 112s Selecting previously unselected package gcc-14-s390x-linux-gnu. 112s Preparing to unpack .../050-gcc-14-s390x-linux-gnu_14.2.0-17ubuntu3_s390x.deb ... 112s Unpacking gcc-14-s390x-linux-gnu (14.2.0-17ubuntu3) ... 113s Selecting previously unselected package gcc-14. 113s Preparing to unpack .../051-gcc-14_14.2.0-17ubuntu3_s390x.deb ... 113s Unpacking gcc-14 (14.2.0-17ubuntu3) ... 113s Selecting previously unselected package gcc-s390x-linux-gnu. 113s Preparing to unpack .../052-gcc-s390x-linux-gnu_4%3a14.2.0-1ubuntu1_s390x.deb ... 113s Unpacking gcc-s390x-linux-gnu (4:14.2.0-1ubuntu1) ... 113s Selecting previously unselected package gcc. 113s Preparing to unpack .../053-gcc_4%3a14.2.0-1ubuntu1_s390x.deb ... 113s Unpacking gcc (4:14.2.0-1ubuntu1) ... 113s Selecting previously unselected package libstdc++-14-dev:s390x. 113s Preparing to unpack .../054-libstdc++-14-dev_14.2.0-17ubuntu3_s390x.deb ... 113s Unpacking libstdc++-14-dev:s390x (14.2.0-17ubuntu3) ... 113s Selecting previously unselected package g++-14-s390x-linux-gnu. 113s Preparing to unpack .../055-g++-14-s390x-linux-gnu_14.2.0-17ubuntu3_s390x.deb ... 113s Unpacking g++-14-s390x-linux-gnu (14.2.0-17ubuntu3) ... 113s Selecting previously unselected package g++-14. 113s Preparing to unpack .../056-g++-14_14.2.0-17ubuntu3_s390x.deb ... 113s Unpacking g++-14 (14.2.0-17ubuntu3) ... 113s Selecting previously unselected package g++-s390x-linux-gnu. 113s Preparing to unpack .../057-g++-s390x-linux-gnu_4%3a14.2.0-1ubuntu1_s390x.deb ... 113s Unpacking g++-s390x-linux-gnu (4:14.2.0-1ubuntu1) ... 113s Selecting previously unselected package g++. 113s Preparing to unpack .../058-g++_4%3a14.2.0-1ubuntu1_s390x.deb ... 113s Unpacking g++ (4:14.2.0-1ubuntu1) ... 113s Selecting previously unselected package libaec0:s390x. 113s Preparing to unpack .../059-libaec0_1.1.3-1_s390x.deb ... 113s Unpacking libaec0:s390x (1.1.3-1) ... 113s Selecting previously unselected package libann-cctbx0. 113s Preparing to unpack .../060-libann-cctbx0_1.1.2+doc-9build1_s390x.deb ... 113s Unpacking libann-cctbx0 (1.1.2+doc-9build1) ... 113s Selecting previously unselected package libann-cctbx-dev. 113s Preparing to unpack .../061-libann-cctbx-dev_1.1.2+doc-9build1_s390x.deb ... 113s Unpacking libann-cctbx-dev (1.1.2+doc-9build1) ... 113s Selecting previously unselected package libantlr3c-3.4-0:s390x. 113s Preparing to unpack .../062-libantlr3c-3.4-0_3.4+dfsg-4build2_s390x.deb ... 113s Unpacking libantlr3c-3.4-0:s390x (3.4+dfsg-4build2) ... 113s Selecting previously unselected package libatk1.0-0t64:s390x. 113s Preparing to unpack .../063-libatk1.0-0t64_2.55.90-1_s390x.deb ... 113s Unpacking libatk1.0-0t64:s390x (2.55.90-1) ... 113s Selecting previously unselected package libxi6:s390x. 113s Preparing to unpack .../064-libxi6_2%3a1.8.2-1_s390x.deb ... 113s Unpacking libxi6:s390x (2:1.8.2-1) ... 113s Selecting previously unselected package libatspi2.0-0t64:s390x. 113s Preparing to unpack .../065-libatspi2.0-0t64_2.55.90-1_s390x.deb ... 113s Unpacking libatspi2.0-0t64:s390x (2.55.90-1) ... 113s Selecting previously unselected package libatk-bridge2.0-0t64:s390x. 113s Preparing to unpack .../066-libatk-bridge2.0-0t64_2.55.90-1_s390x.deb ... 113s Unpacking libatk-bridge2.0-0t64:s390x (2.55.90-1) ... 113s Selecting previously unselected package libavahi-common-data:s390x. 113s Preparing to unpack .../067-libavahi-common-data_0.8-16ubuntu1_s390x.deb ... 113s Unpacking libavahi-common-data:s390x (0.8-16ubuntu1) ... 113s Selecting previously unselected package libavahi-common3:s390x. 113s Preparing to unpack .../068-libavahi-common3_0.8-16ubuntu1_s390x.deb ... 113s Unpacking libavahi-common3:s390x (0.8-16ubuntu1) ... 113s Selecting previously unselected package libavahi-client3:s390x. 113s Preparing to unpack .../069-libavahi-client3_0.8-16ubuntu1_s390x.deb ... 113s Unpacking libavahi-client3:s390x (0.8-16ubuntu1) ... 113s Selecting previously unselected package libboost-python1.83.0. 113s Preparing to unpack .../070-libboost-python1.83.0_1.83.0-4.1ubuntu1_s390x.deb ... 113s Unpacking libboost-python1.83.0 (1.83.0-4.1ubuntu1) ... 113s Selecting previously unselected package libboost-numpy1.83.0. 113s Preparing to unpack .../071-libboost-numpy1.83.0_1.83.0-4.1ubuntu1_s390x.deb ... 113s Unpacking libboost-numpy1.83.0 (1.83.0-4.1ubuntu1) ... 113s Selecting previously unselected package libboost1.83-dev:s390x. 113s Preparing to unpack .../072-libboost1.83-dev_1.83.0-4.1ubuntu1_s390x.deb ... 113s Unpacking libboost1.83-dev:s390x (1.83.0-4.1ubuntu1) ... 114s Selecting previously unselected package libexpat1-dev:s390x. 114s Preparing to unpack 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libxcb-shm0:s390x. 115s Preparing to unpack .../088-libxcb-shm0_1.17.0-2_s390x.deb ... 115s Unpacking libxcb-shm0:s390x (1.17.0-2) ... 115s Selecting previously unselected package libcairo2:s390x. 115s Preparing to unpack .../089-libcairo2_1.18.2-2_s390x.deb ... 115s Unpacking libcairo2:s390x (1.18.2-2) ... 115s Selecting previously unselected package libcairo-gobject2:s390x. 115s Preparing to unpack .../090-libcairo-gobject2_1.18.2-2_s390x.deb ... 115s Unpacking libcairo-gobject2:s390x (1.18.2-2) ... 115s Selecting previously unselected package libsz2:s390x. 115s Preparing to unpack .../091-libsz2_1.1.3-1_s390x.deb ... 115s Unpacking libsz2:s390x (1.1.3-1) ... 115s Selecting previously unselected package libhdf5-310:s390x. 115s Preparing to unpack .../092-libhdf5-310_1.14.5+repack-3_s390x.deb ... 115s Unpacking libhdf5-310:s390x (1.14.5+repack-3) ... 115s Selecting previously unselected package libcbf1t64:s390x. 115s Preparing to unpack .../093-libcbf1t64_0.9.7+dfsg1-5build1_s390x.deb ... 115s Unpacking libcbf1t64:s390x (0.9.7+dfsg1-5build1) ... 115s Selecting previously unselected package libccp4-data. 115s Preparing to unpack .../094-libccp4-data_8.0.0-4_all.deb ... 115s Unpacking libccp4-data (8.0.0-4) ... 115s Selecting previously unselected package libccp4c0t64:s390x. 115s Preparing to unpack .../095-libccp4c0t64_8.0.0-4_s390x.deb ... 115s Unpacking libccp4c0t64:s390x (8.0.0-4) ... 115s Selecting previously unselected package libmmdb2-0:s390x. 115s Preparing to unpack .../096-libmmdb2-0_2.0.22-1_s390x.deb ... 115s Unpacking libmmdb2-0:s390x (2.0.22-1) ... 115s Selecting previously unselected package libccp4f0t64:s390x. 115s Preparing to unpack .../097-libccp4f0t64_8.0.0-4_s390x.deb ... 115s Unpacking libccp4f0t64:s390x (8.0.0-4) ... 115s Selecting previously unselected package libccp4-dev:s390x. 115s Preparing to unpack .../098-libccp4-dev_8.0.0-4_s390x.deb ... 115s Unpacking libccp4-dev:s390x (8.0.0-4) ... 115s Selecting previously unselected package libcctbx0. 115s Preparing to unpack .../099-libcctbx0_2024.10+ds2+~3.22.1+ds1-4build2_s390x.deb ... 115s Unpacking libcctbx0 (2024.10+ds2+~3.22.1+ds1-4build2) ... 115s Selecting previously unselected package libcctbx-dev. 115s Preparing to unpack .../100-libcctbx-dev_2024.10+ds2+~3.22.1+ds1-4build2_s390x.deb ... 115s Unpacking libcctbx-dev (2024.10+ds2+~3.22.1+ds1-4build2) ... 115s Selecting previously unselected package liblcms2-2:s390x. 115s Preparing to unpack .../101-liblcms2-2_2.16-2_s390x.deb ... 115s Unpacking liblcms2-2:s390x (2.16-2) ... 115s Selecting previously unselected package libcolord2:s390x. 115s Preparing to unpack .../102-libcolord2_1.4.7-3_s390x.deb ... 115s Unpacking libcolord2:s390x (1.4.7-3) ... 115s Selecting previously unselected package libcups2t64:s390x. 115s Preparing to unpack .../103-libcups2t64_2.4.11-0ubuntu2_s390x.deb ... 115s Unpacking libcups2t64:s390x (2.4.11-0ubuntu2) ... 115s Selecting previously unselected package libdatrie1:s390x. 115s Preparing to unpack .../104-libdatrie1_0.2.13-3build1_s390x.deb ... 115s Unpacking libdatrie1:s390x (0.2.13-3build1) ... 115s Selecting previously unselected package libdouble-conversion3:s390x. 115s Preparing to unpack .../105-libdouble-conversion3_3.3.1-1_s390x.deb ... 115s Unpacking libdouble-conversion3:s390x (3.3.1-1) ... 115s Selecting previously unselected package libwayland-server0:s390x. 115s Preparing to unpack .../106-libwayland-server0_1.23.1-3_s390x.deb ... 115s Unpacking libwayland-server0:s390x (1.23.1-3) ... 115s Selecting previously unselected package libx11-xcb1:s390x. 115s Preparing to unpack .../107-libx11-xcb1_2%3a1.8.10-2_s390x.deb ... 115s Unpacking libx11-xcb1:s390x (2:1.8.10-2) ... 115s Selecting previously unselected package libxcb-dri3-0:s390x. 115s Preparing to unpack .../108-libxcb-dri3-0_1.17.0-2_s390x.deb ... 115s Unpacking libxcb-dri3-0:s390x (1.17.0-2) ... 115s Selecting previously unselected package libxcb-present0:s390x. 115s Preparing to unpack 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Unpacking mesa-libgallium:s390x (25.0.1-2ubuntu1) ... 115s Selecting previously unselected package libgbm1:s390x. 115s Preparing to unpack .../115-libgbm1_25.0.1-2ubuntu1_s390x.deb ... 115s Unpacking libgbm1:s390x (25.0.1-2ubuntu1) ... 115s Selecting previously unselected package libwayland-client0:s390x. 115s Preparing to unpack .../116-libwayland-client0_1.23.1-3_s390x.deb ... 115s Unpacking libwayland-client0:s390x (1.23.1-3) ... 115s Selecting previously unselected package libegl-mesa0:s390x. 115s Preparing to unpack .../117-libegl-mesa0_25.0.1-2ubuntu1_s390x.deb ... 115s Unpacking libegl-mesa0:s390x (25.0.1-2ubuntu1) ... 115s Selecting previously unselected package libepoxy0:s390x. 115s Preparing to unpack .../118-libepoxy0_1.5.10-2_s390x.deb ... 115s Unpacking libepoxy0:s390x (1.5.10-2) ... 115s Selecting previously unselected package libvulkan1:s390x. 115s Preparing to unpack .../119-libvulkan1_1.4.304.0-1_s390x.deb ... 115s Unpacking libvulkan1:s390x (1.4.304.0-1) ... 115s Selecting previously unselected package libgl1-mesa-dri:s390x. 115s Preparing to unpack .../120-libgl1-mesa-dri_25.0.1-2ubuntu1_s390x.deb ... 115s Unpacking libgl1-mesa-dri:s390x (25.0.1-2ubuntu1) ... 115s Selecting previously unselected package libglvnd0:s390x. 115s Preparing to unpack .../121-libglvnd0_1.7.0-1build1_s390x.deb ... 115s Unpacking libglvnd0:s390x (1.7.0-1build1) ... 115s Selecting previously unselected package libxcb-glx0:s390x. 115s Preparing to unpack .../122-libxcb-glx0_1.17.0-2_s390x.deb ... 115s Unpacking libxcb-glx0:s390x (1.17.0-2) ... 115s Selecting previously unselected package libxxf86vm1:s390x. 115s Preparing to unpack .../123-libxxf86vm1_1%3a1.1.4-1build4_s390x.deb ... 115s Unpacking libxxf86vm1:s390x (1:1.1.4-1build4) ... 115s Selecting previously unselected package libglx-mesa0:s390x. 115s Preparing to unpack .../124-libglx-mesa0_25.0.1-2ubuntu1_s390x.deb ... 115s Unpacking libglx-mesa0:s390x (25.0.1-2ubuntu1) ... 115s Selecting previously unselected package libglx0:s390x. 115s Preparing to unpack .../125-libglx0_1.7.0-1build1_s390x.deb ... 115s Unpacking libglx0:s390x (1.7.0-1build1) ... 115s Selecting previously unselected package libgl1:s390x. 115s Preparing to unpack .../126-libgl1_1.7.0-1build1_s390x.deb ... 115s Unpacking libgl1:s390x (1.7.0-1build1) ... 115s Selecting previously unselected package libglew2.2:s390x. 115s Preparing to unpack .../127-libglew2.2_2.2.0-4build1_s390x.deb ... 115s Unpacking libglew2.2:s390x (2.2.0-4build1) ... 115s Selecting previously unselected package libgraphite2-3:s390x. 115s Preparing to unpack .../128-libgraphite2-3_1.3.14-2ubuntu1_s390x.deb ... 115s Unpacking libgraphite2-3:s390x (1.3.14-2ubuntu1) ... 115s Selecting previously unselected package libharfbuzz0b:s390x. 115s Preparing to unpack .../129-libharfbuzz0b_10.2.0-1_s390x.deb ... 115s Unpacking libharfbuzz0b:s390x (10.2.0-1) ... 115s Selecting previously unselected package libthai-data. 115s Preparing to unpack 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.../140-libxdamage1_1%3a1.1.6-1build1_s390x.deb ... 115s Unpacking libxdamage1:s390x (1:1.1.6-1build1) ... 115s Selecting previously unselected package libxinerama1:s390x. 115s Preparing to unpack .../141-libxinerama1_2%3a1.1.4-3build1_s390x.deb ... 115s Unpacking libxinerama1:s390x (2:1.1.4-3build1) ... 115s Selecting previously unselected package libxrandr2:s390x. 115s Preparing to unpack .../142-libxrandr2_2%3a1.5.4-1_s390x.deb ... 115s Unpacking libxrandr2:s390x (2:1.5.4-1) ... 115s Selecting previously unselected package libgtk-3-common. 115s Preparing to unpack .../143-libgtk-3-common_3.24.48-3ubuntu1_all.deb ... 115s Unpacking libgtk-3-common (3.24.48-3ubuntu1) ... 115s Selecting previously unselected package libgtk-3-0t64:s390x. 115s Preparing to unpack .../144-libgtk-3-0t64_3.24.48-3ubuntu1_s390x.deb ... 115s Unpacking libgtk-3-0t64:s390x (3.24.48-3ubuntu1) ... 116s Selecting previously unselected package libhdf5-hl-310:s390x. 116s Preparing to unpack .../145-libhdf5-hl-310_1.14.5+repack-3_s390x.deb ... 116s Unpacking libhdf5-hl-310:s390x (1.14.5+repack-3) ... 116s Selecting previously unselected package libice6:s390x. 116s Preparing to unpack .../146-libice6_2%3a1.1.1-1_s390x.deb ... 116s Unpacking libice6:s390x (2:1.1.1-1) ... 116s Selecting previously unselected package libimagequant0:s390x. 116s Preparing to unpack .../147-libimagequant0_2.18.0-1build1_s390x.deb ... 116s Unpacking libimagequant0:s390x (2.18.0-1build1) ... 116s Selecting previously unselected package libwacom-common. 116s Preparing to unpack .../148-libwacom-common_2.14.0-1_all.deb ... 116s Unpacking libwacom-common (2.14.0-1) ... 116s Selecting previously unselected package libwacom9:s390x. 116s Preparing to unpack .../149-libwacom9_2.14.0-1_s390x.deb ... 116s Unpacking libwacom9:s390x (2.14.0-1) ... 116s Selecting previously unselected package libinput-bin. 116s Preparing to unpack .../150-libinput-bin_1.27.1-1_s390x.deb ... 116s Unpacking libinput-bin (1.27.1-1) ... 116s Selecting previously unselected package libmtdev1t64:s390x. 116s Preparing to unpack .../151-libmtdev1t64_1.1.7-1_s390x.deb ... 116s Unpacking libmtdev1t64:s390x (1.1.7-1) ... 116s Selecting previously unselected package libinput10:s390x. 116s Preparing to unpack .../152-libinput10_1.27.1-1_s390x.deb ... 116s Unpacking libinput10:s390x (1.27.1-1) ... 116s Selecting previously unselected package libjs-jquery-ui. 116s Preparing to unpack .../153-libjs-jquery-ui_1.13.2+dfsg-1_all.deb ... 116s Unpacking libjs-jquery-ui (1.13.2+dfsg-1) ... 116s Selecting previously unselected package liblbfgsb0:s390x. 116s Preparing to unpack .../154-liblbfgsb0_3.0+dfsg.4-1build1_s390x.deb ... 116s Unpacking liblbfgsb0:s390x (3.0+dfsg.4-1build1) ... 116s Selecting previously unselected package liblzf1:s390x. 116s Preparing to unpack .../155-liblzf1_3.6-4_s390x.deb ... 116s Unpacking liblzf1:s390x (3.6-4) ... 116s Selecting previously unselected package libmd4c0:s390x. 116s Preparing to unpack .../156-libmd4c0_0.5.2-2_s390x.deb ... 116s Unpacking libmd4c0:s390x (0.5.2-2) ... 116s Selecting previously unselected package libnetcdf22:s390x. 116s Preparing to unpack .../157-libnetcdf22_1%3a4.9.3-1_s390x.deb ... 116s Unpacking libnetcdf22:s390x (1:4.9.3-1) ... 116s Selecting previously unselected package libnotify4:s390x. 116s Preparing to unpack .../158-libnotify4_0.8.4-1_s390x.deb ... 116s Unpacking libnotify4:s390x (0.8.4-1) ... 116s Selecting previously unselected package libpcre2-16-0:s390x. 116s Preparing to unpack .../159-libpcre2-16-0_10.45-1_s390x.deb ... 116s Unpacking libpcre2-16-0:s390x (10.45-1) ... 116s Selecting previously unselected package libpcre2-32-0:s390x. 116s Preparing to unpack .../160-libpcre2-32-0_10.45-1_s390x.deb ... 116s Unpacking libpcre2-32-0:s390x (10.45-1) ... 116s Selecting previously unselected package libqhull-r8.0:s390x. 116s Preparing to unpack .../161-libqhull-r8.0_2020.2-6build1_s390x.deb ... 116s Unpacking libqhull-r8.0:s390x (2020.2-6build1) ... 116s Selecting previously unselected package libqt5core5t64:s390x. 116s Preparing to unpack .../162-libqt5core5t64_5.15.15+dfsg-4ubuntu1_s390x.deb ... 116s Unpacking libqt5core5t64:s390x (5.15.15+dfsg-4ubuntu1) ... 116s Selecting previously unselected package libqt5dbus5t64:s390x. 116s Preparing to unpack .../163-libqt5dbus5t64_5.15.15+dfsg-4ubuntu1_s390x.deb ... 116s Unpacking libqt5dbus5t64:s390x (5.15.15+dfsg-4ubuntu1) ... 116s Selecting previously unselected package libegl1:s390x. 116s Preparing to unpack .../164-libegl1_1.7.0-1build1_s390x.deb ... 116s Unpacking libegl1:s390x (1.7.0-1build1) ... 116s Selecting previously unselected package libqt5network5t64:s390x. 116s Preparing to unpack .../165-libqt5network5t64_5.15.15+dfsg-4ubuntu1_s390x.deb ... 116s Unpacking libqt5network5t64:s390x (5.15.15+dfsg-4ubuntu1) ... 116s Selecting previously unselected package libsm6:s390x. 116s Preparing to unpack .../166-libsm6_2%3a1.2.4-1_s390x.deb ... 116s Unpacking libsm6:s390x (2:1.2.4-1) ... 116s Selecting previously unselected package libxcb-icccm4:s390x. 116s Preparing to unpack .../167-libxcb-icccm4_0.4.2-1_s390x.deb ... 116s Unpacking libxcb-icccm4:s390x (0.4.2-1) ... 116s Selecting previously unselected package libxcb-util1:s390x. 116s Preparing to unpack .../168-libxcb-util1_0.4.1-1_s390x.deb ... 116s Unpacking libxcb-util1:s390x (0.4.1-1) ... 116s Selecting previously unselected package libxcb-image0:s390x. 116s Preparing to unpack .../169-libxcb-image0_0.4.0-2build1_s390x.deb ... 116s Unpacking libxcb-image0:s390x (0.4.0-2build1) ... 116s Selecting previously unselected package libxcb-keysyms1:s390x. 116s Preparing to unpack .../170-libxcb-keysyms1_0.4.1-1_s390x.deb ... 116s Unpacking libxcb-keysyms1:s390x (0.4.1-1) ... 116s Selecting previously unselected package libxcb-render-util0:s390x. 116s Preparing to unpack .../171-libxcb-render-util0_0.3.10-1_s390x.deb ... 116s Unpacking libxcb-render-util0:s390x (0.3.10-1) ... 116s Selecting previously unselected package libxcb-shape0:s390x. 116s Preparing to unpack .../172-libxcb-shape0_1.17.0-2_s390x.deb ... 116s Unpacking libxcb-shape0:s390x (1.17.0-2) ... 116s Selecting previously unselected package libxcb-xinerama0:s390x. 116s Preparing to unpack .../173-libxcb-xinerama0_1.17.0-2_s390x.deb ... 116s Unpacking libxcb-xinerama0:s390x (1.17.0-2) ... 116s Selecting previously unselected package libxcb-xinput0:s390x. 116s Preparing to unpack .../174-libxcb-xinput0_1.17.0-2_s390x.deb ... 116s Unpacking libxcb-xinput0:s390x (1.17.0-2) ... 116s Selecting previously unselected package libxcb-xkb1:s390x. 116s Preparing to unpack .../175-libxcb-xkb1_1.17.0-2_s390x.deb ... 116s Unpacking libxcb-xkb1:s390x (1.17.0-2) ... 116s Selecting previously unselected package libxkbcommon-x11-0:s390x. 116s Preparing to unpack .../176-libxkbcommon-x11-0_1.7.0-2_s390x.deb ... 116s Unpacking libxkbcommon-x11-0:s390x (1.7.0-2) ... 116s Selecting previously unselected package libqt5gui5t64:s390x. 116s Preparing to unpack .../177-libqt5gui5t64_5.15.15+dfsg-4ubuntu1_s390x.deb ... 116s Unpacking libqt5gui5t64:s390x (5.15.15+dfsg-4ubuntu1) ... 116s Selecting previously unselected package libqt5widgets5t64:s390x. 116s Preparing to unpack .../178-libqt5widgets5t64_5.15.15+dfsg-4ubuntu1_s390x.deb ... 116s Unpacking libqt5widgets5t64:s390x (5.15.15+dfsg-4ubuntu1) ... 116s Selecting previously unselected package libqt5xml5t64:s390x. 116s Preparing to unpack .../179-libqt5xml5t64_5.15.15+dfsg-4ubuntu1_s390x.deb ... 116s Unpacking libqt5xml5t64:s390x (5.15.15+dfsg-4ubuntu1) ... 116s Selecting previously unselected package libqt5designer5:s390x. 116s Preparing to unpack .../180-libqt5designer5_5.15.15-6build1_s390x.deb ... 116s Unpacking libqt5designer5:s390x (5.15.15-6build1) ... 116s Selecting previously unselected package libqt5sql5t64:s390x. 116s Preparing to unpack .../181-libqt5sql5t64_5.15.15+dfsg-4ubuntu1_s390x.deb ... 116s Unpacking libqt5sql5t64:s390x (5.15.15+dfsg-4ubuntu1) ... 116s Selecting previously unselected package libqt5help5:s390x. 116s Preparing to unpack .../182-libqt5help5_5.15.15-6build1_s390x.deb ... 116s Unpacking libqt5help5:s390x (5.15.15-6build1) ... 116s Selecting previously unselected package libqt5opengl5t64:s390x. 116s Preparing to unpack .../183-libqt5opengl5t64_5.15.15+dfsg-4ubuntu1_s390x.deb ... 116s Unpacking libqt5opengl5t64:s390x (5.15.15+dfsg-4ubuntu1) ... 116s Selecting previously unselected package libqt5printsupport5t64:s390x. 116s Preparing to unpack .../184-libqt5printsupport5t64_5.15.15+dfsg-4ubuntu1_s390x.deb ... 116s Unpacking libqt5printsupport5t64:s390x (5.15.15+dfsg-4ubuntu1) ... 116s Selecting previously unselected package libqt5test5t64:s390x. 116s Preparing to unpack .../185-libqt5test5t64_5.15.15+dfsg-4ubuntu1_s390x.deb ... 116s Unpacking libqt5test5t64:s390x (5.15.15+dfsg-4ubuntu1) ... 116s Selecting previously unselected package libraqm0:s390x. 116s Preparing to unpack .../186-libraqm0_0.10.2-1_s390x.deb ... 116s Unpacking libraqm0:s390x (0.10.2-1) ... 116s Selecting previously unselected package libssm2:s390x. 116s Preparing to unpack .../187-libssm2_1.4.0-2build1_s390x.deb ... 116s Unpacking libssm2:s390x (1.4.0-2build1) ... 116s Selecting previously unselected package libwebpdemux2:s390x. 116s Preparing to unpack .../188-libwebpdemux2_1.5.0-0.1_s390x.deb ... 116s Unpacking libwebpdemux2:s390x (1.5.0-0.1) ... 116s Selecting previously unselected package libwebpmux3:s390x. 116s Preparing to unpack .../189-libwebpmux3_1.5.0-0.1_s390x.deb ... 116s Unpacking libwebpmux3:s390x (1.5.0-0.1) ... 116s Selecting previously unselected package libwxbase3.2-1t64:s390x. 116s Preparing to unpack .../190-libwxbase3.2-1t64_3.2.6+dfsg-2ubuntu1_s390x.deb ... 116s Unpacking libwxbase3.2-1t64:s390x (3.2.6+dfsg-2ubuntu1) ... 116s Selecting previously unselected package libxtst6:s390x. 116s Preparing to unpack .../191-libxtst6_2%3a1.2.5-1_s390x.deb ... 116s Unpacking libxtst6:s390x (2:1.2.5-1) ... 116s Selecting previously unselected package libwxgtk3.2-1t64:s390x. 116s Preparing to unpack .../192-libwxgtk3.2-1t64_3.2.6+dfsg-2ubuntu1_s390x.deb ... 116s Unpacking libwxgtk3.2-1t64:s390x (3.2.6+dfsg-2ubuntu1) ... 116s Selecting previously unselected package libwxgtk-gl3.2-1t64:s390x. 116s Preparing to unpack .../193-libwxgtk-gl3.2-1t64_3.2.6+dfsg-2ubuntu1_s390x.deb ... 116s Unpacking libwxgtk-gl3.2-1t64:s390x (3.2.6+dfsg-2ubuntu1) ... 116s Selecting previously unselected package libxslt1.1:s390x. 116s Preparing to unpack .../194-libxslt1.1_1.1.39-0exp1ubuntu2_s390x.deb ... 116s Unpacking libxslt1.1:s390x (1.1.39-0exp1ubuntu2) ... 116s Selecting previously unselected package pymol-data. 116s Preparing to unpack .../195-pymol-data_3.0.0+dfsg-3build2_all.deb ... 116s Unpacking pymol-data (3.0.0+dfsg-3build2) ... 117s Selecting previously unselected package python-matplotlib-data. 117s Preparing to unpack .../196-python-matplotlib-data_3.8.3-7build1_all.deb ... 117s Unpacking python-matplotlib-data (3.8.3-7build1) ... 117s Selecting previously unselected package python3-all. 117s Preparing to unpack .../197-python3-all_3.13.2-2_s390x.deb ... 117s Unpacking python3-all (3.13.2-2) ... 117s Selecting previously unselected package python3-brotli. 117s Preparing to unpack .../198-python3-brotli_1.1.0-2build4_s390x.deb ... 117s Unpacking python3-brotli (1.1.0-2build4) ... 117s Selecting previously unselected package python3-legacy-cgi. 117s Preparing to unpack .../199-python3-legacy-cgi_2.6.2-1_all.deb ... 117s Unpacking python3-legacy-cgi (2.6.2-1) ... 117s Selecting previously unselected package python3-pycbf. 117s Preparing to unpack .../200-python3-pycbf_0.9.7+dfsg1-5build1_s390x.deb ... 117s Unpacking python3-pycbf (0.9.7+dfsg1-5build1) ... 117s Selecting previously unselected package python3-h5py-serial. 117s Preparing to unpack .../201-python3-h5py-serial_3.13.0-1_s390x.deb ... 117s Unpacking python3-h5py-serial (3.13.0-1) ... 117s Selecting previously unselected package python3-h5py. 117s Preparing to unpack .../202-python3-h5py_3.13.0-1_all.deb ... 117s Unpacking python3-h5py (3.13.0-1) ... 117s Selecting previously unselected package python3-hdf5plugin. 117s Preparing to unpack .../203-python3-hdf5plugin_5.0.0-1_all.deb ... 117s Unpacking python3-hdf5plugin (5.0.0-1) ... 117s Selecting previously unselected package python3-dateutil. 117s Preparing to unpack .../204-python3-dateutil_2.9.0-3_all.deb ... 117s Unpacking python3-dateutil (2.9.0-3) ... 117s Selecting previously unselected package libopenjp2-7:s390x. 117s Preparing to unpack .../205-libopenjp2-7_2.5.0-2ubuntu3_s390x.deb ... 117s Unpacking libopenjp2-7:s390x (2.5.0-2ubuntu3) ... 117s Selecting previously unselected package python3-pil:s390x. 117s Preparing to unpack .../206-python3-pil_11.1.0-5build1_s390x.deb ... 117s Unpacking python3-pil:s390x (11.1.0-5build1) ... 117s Selecting previously unselected package python3.12-tk. 117s Preparing to unpack .../207-python3.12-tk_3.12.9-1_s390x.deb ... 117s Unpacking python3.12-tk (3.12.9-1) ... 117s Selecting previously unselected package python3.13-tk. 117s Preparing to unpack .../208-python3.13-tk_3.13.2-1_s390x.deb ... 117s Unpacking python3.13-tk (3.13.2-1) ... 117s Selecting previously unselected package python3-tk:s390x. 117s Preparing to unpack .../209-python3-tk_3.13.1-1_s390x.deb ... 117s Unpacking python3-tk:s390x (3.13.1-1) ... 117s Selecting previously unselected package python3-pil.imagetk:s390x. 117s Preparing to unpack .../210-python3-pil.imagetk_11.1.0-5build1_s390x.deb ... 117s Unpacking python3-pil.imagetk:s390x (11.1.0-5build1) ... 117s Selecting previously unselected package python3-contourpy. 117s Preparing to unpack .../211-python3-contourpy_1.3.1-1build1_s390x.deb ... 117s Unpacking python3-contourpy (1.3.1-1build1) ... 117s Selecting previously unselected package python3-cycler. 117s Preparing to unpack .../212-python3-cycler_0.12.1-1_all.deb ... 117s Unpacking python3-cycler (0.12.1-1) ... 117s Selecting previously unselected package python3-platformdirs. 117s Preparing to unpack .../213-python3-platformdirs_4.3.6-1_all.deb ... 117s Unpacking python3-platformdirs (4.3.6-1) ... 117s Selecting previously unselected package python3-fs. 117s Preparing to unpack .../214-python3-fs_2.4.16-7_all.deb ... 117s Unpacking python3-fs (2.4.16-7) ... 117s Selecting previously unselected package python3-lxml:s390x. 117s Preparing to unpack .../215-python3-lxml_5.3.1-1build1_s390x.deb ... 117s Unpacking python3-lxml:s390x (5.3.1-1build1) ... 117s Selecting previously unselected package python3-lz4. 117s Preparing to unpack .../216-python3-lz4_4.4.0+dfsg-1build1_s390x.deb ... 117s Unpacking python3-lz4 (4.4.0+dfsg-1build1) ... 117s Selecting previously unselected package python3-decorator. 117s Preparing to unpack .../217-python3-decorator_5.1.1-5_all.deb ... 117s Unpacking python3-decorator (5.1.1-5) ... 117s Selecting previously unselected package python3-scipy. 117s Preparing to unpack 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... 118s Selecting previously unselected package python3-kiwisolver. 118s Preparing to unpack .../224-python3-kiwisolver_1.4.7-3build1_s390x.deb ... 118s Unpacking python3-kiwisolver (1.4.7-3build1) ... 118s Selecting previously unselected package python3-packaging. 118s Preparing to unpack .../225-python3-packaging_24.2-1_all.deb ... 118s Unpacking python3-packaging (24.2-1) ... 118s Selecting previously unselected package python3-matplotlib. 118s Preparing to unpack .../226-python3-matplotlib_3.8.3-7build1_s390x.deb ... 118s Unpacking python3-matplotlib (3.8.3-7build1) ... 118s Selecting previously unselected package sphinx-rtd-theme-common. 118s Preparing to unpack .../227-sphinx-rtd-theme-common_3.0.2+dfsg-2_all.deb ... 118s Unpacking sphinx-rtd-theme-common (3.0.2+dfsg-2) ... 118s Selecting previously unselected package python3-mrcfile. 118s Preparing to unpack .../228-python3-mrcfile_1.5.4-2_all.deb ... 118s Unpacking python3-mrcfile (1.5.4-2) ... 118s Selecting previously unselected package python3-natsort. 118s Preparing to unpack .../229-python3-natsort_8.0.2-2_all.deb ... 118s Unpacking python3-natsort (8.0.2-2) ... 118s Selecting previously unselected package python3-flexcache. 118s Preparing to unpack .../230-python3-flexcache_0.3-2_all.deb ... 118s Unpacking python3-flexcache (0.3-2) ... 118s Selecting previously unselected package python3-flexparser. 118s Preparing to unpack .../231-python3-flexparser_0.4-1_all.deb ... 118s Unpacking python3-flexparser (0.4-1) ... 118s Selecting previously unselected package python3-pint. 118s Preparing to unpack .../232-python3-pint_0.24.4-1_all.deb ... 118s Unpacking python3-pint (0.24.4-1) ... 118s Selecting previously unselected package python3-nxmx. 118s Preparing to unpack .../233-python3-nxmx_0.0.4-1_all.deb ... 118s Unpacking python3-nxmx (0.0.4-1) ... 118s Selecting previously unselected package python3-ordered-set. 118s Preparing to unpack .../234-python3-ordered-set_4.1.0-1_all.deb ... 118s Unpacking python3-ordered-set (4.1.0-1) ... 118s Selecting previously unselected package python3-procrunner. 118s Preparing to unpack .../235-python3-procrunner_2.3.3-2_all.deb ... 118s Unpacking python3-procrunner (2.3.3-2) ... 118s Selecting previously unselected package libopengl0:s390x. 118s Preparing to unpack .../236-libopengl0_1.7.0-1build1_s390x.deb ... 118s Unpacking libopengl0:s390x (1.7.0-1build1) ... 118s Selecting previously unselected package libglu1-mesa:s390x. 118s Preparing to unpack .../237-libglu1-mesa_9.0.2-1.1build1_s390x.deb ... 118s Unpacking libglu1-mesa:s390x (9.0.2-1.1build1) ... 118s Selecting previously unselected package python3-opengl. 118s Preparing to unpack .../238-python3-opengl_3.1.7+dfsg-1_all.deb ... 118s Unpacking python3-opengl (3.1.7+dfsg-1) ... 118s Selecting previously unselected package python3-pyqt5.sip. 118s Preparing to unpack .../239-python3-pyqt5.sip_12.17.0-1build1_s390x.deb ... 118s Unpacking python3-pyqt5.sip (12.17.0-1build1) ... 118s Selecting previously unselected package python3-pyqt5. 118s Preparing to unpack .../240-python3-pyqt5_5.15.11+dfsg-2_s390x.deb ... 118s Unpacking python3-pyqt5 (5.15.11+dfsg-2) ... 118s Selecting previously unselected package python3-pyqt5.qtopengl. 118s Preparing to unpack .../241-python3-pyqt5.qtopengl_5.15.11+dfsg-2_s390x.deb ... 118s Unpacking python3-pyqt5.qtopengl (5.15.11+dfsg-2) ... 118s Selecting previously unselected package python3-pymol. 118s Preparing to unpack .../242-python3-pymol_3.0.0+dfsg-3build2_s390x.deb ... 118s Unpacking python3-pymol (3.0.0+dfsg-3build2) ... 118s Selecting previously unselected package python3-six. 118s Preparing to unpack .../243-python3-six_1.17.0-1_all.deb ... 118s Unpacking python3-six (1.17.0-1) ... 118s Selecting previously unselected package python3-tqdm. 118s Preparing to unpack .../244-python3-tqdm_4.67.1-2_all.deb ... 118s Unpacking python3-tqdm (4.67.1-2) ... 118s Selecting previously unselected package python3-wxgtk4.0. 118s Preparing to unpack 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libxcb-dri3-0:s390x (1.17.0-2) ... 119s Setting up liblcms2-2:s390x (2.16-2) ... 119s Setting up python3-iniconfig (1.1.1-2) ... 120s Setting up libpixman-1-0:s390x (0.44.0-3) ... 120s Setting up libsharpyuv0:s390x (1.5.0-0.1) ... 120s Setting up libwayland-server0:s390x (1.23.1-3) ... 120s Setting up libx11-xcb1:s390x (2:1.8.10-2) ... 120s Setting up libdouble-conversion3:s390x (3.3.1-1) ... 120s Setting up fonts-lato (2.015-1) ... 120s Setting up libxdamage1:s390x (1:1.1.6-1build1) ... 120s Setting up libxcb-xfixes0:s390x (1.17.0-2) ... 120s Setting up libantlr3c-3.4-0:s390x (3.4+dfsg-4build2) ... 120s Setting up hicolor-icon-theme (0.18-2) ... 120s Setting up libxi6:s390x (2:1.8.2-1) ... 120s Setting up libxcb-xinput0:s390x (1.17.0-2) ... 120s Setting up libxrender1:s390x (1:0.9.10-1.1build1) ... 120s Setting up libdatrie1:s390x (0.2.13-3build1) ... 120s Setting up libmmdb2-0:s390x (2.0.22-1) ... 120s Setting up libboost-timer1.83.0:s390x (1.83.0-4.1ubuntu1) ... 120s Setting up python3-lz4 (4.4.0+dfsg-1build1) ... 120s Setting up libxcb-render0:s390x (1.17.0-2) ... 120s Setting up libglvnd0:s390x (1.7.0-1build1) ... 120s Setting up fonts-lyx (2.4.3-1) ... 120s Setting up libxcb-glx0:s390x (1.17.0-2) ... 120s Setting up python3-tqdm (4.67.1-2) ... 120s Setting up libgdk-pixbuf2.0-common (2.42.12+dfsg-2) ... 120s Setting up libxcb-keysyms1:s390x (0.4.1-1) ... 120s Setting up libxcb-shape0:s390x (1.17.0-2) ... 120s Setting up x11-common (1:7.7+23ubuntu3) ... 120s Setting up libdeflate0:s390x (1.23-1) ... 120s Setting up libboost-thread1.83.0:s390x (1.83.0-4.1ubuntu1) ... 120s Setting up libqhull-r8.0:s390x (2020.2-6build1) ... 120s Setting up libxcb-render-util0:s390x (0.3.10-1) ... 120s Setting up python3-all (3.13.2-2) ... 120s Setting up python3-ordered-set (4.1.0-1) ... 120s Setting up libxcb-shm0:s390x (1.17.0-2) ... 120s Setting up libxcb-icccm4:s390x (0.4.2-1) ... 120s Setting up libccp4-data (8.0.0-4) ... 120s Setting up libgomp1:s390x (15-20250222-0ubuntu1) ... 120s Setting up libjbig0:s390x (2.1-6.1ubuntu2) ... 120s Setting up libpcre2-16-0:s390x (10.45-1) ... 120s Setting up libaec0:s390x (1.1.3-1) ... 120s Setting up libcolord2:s390x (1.4.7-3) ... 120s Setting up python3-platformdirs (4.3.6-1) ... 120s Setting up libopengl0:s390x (1.7.0-1build1) ... 120s Setting up python3-natsort (8.0.2-2) ... 120s Setting up libxcb-util1:s390x (0.4.1-1) ... 120s Setting up libxxf86vm1:s390x (1:1.1.4-1build4) ... 120s Setting up libxcb-xkb1:s390x (1.17.0-2) ... 120s Setting up libxcb-image0:s390x (0.4.0-2build1) ... 120s Setting up python3-fs (2.4.16-7) ... 120s Setting up libxcb-present0:s390x (1.17.0-2) ... 120s Setting up libdconf1:s390x (0.40.0-5) ... 120s Setting up unicode-data (15.1.0-1) ... 120s Setting up python3-six (1.17.0-1) ... 120s Setting up libqt5core5t64:s390x (5.15.15+dfsg-4ubuntu1) ... 120s Setting up python3-decorator (5.1.1-5) ... 121s Setting up libboost-numpy1.83.0 (1.83.0-4.1ubuntu1) ... 121s Setting up libpcre2-32-0:s390x (10.45-1) ... 121s Setting up libblas3:s390x (3.12.1-2) ... 121s update-alternatives: using /usr/lib/s390x-linux-gnu/blas/libblas.so.3 to provide /usr/lib/s390x-linux-gnu/libblas.so.3 (libblas.so.3-s390x-linux-gnu) in auto mode 121s Setting up python3-packaging (24.2-1) ... 121s Setting up libxcb-xinerama0:s390x (1.17.0-2) ... 121s Setting up python3-flexparser (0.4-1) ... 121s Setting up libexpat1-dev:s390x (2.6.4-1) ... 121s Setting up libfreetype6:s390x (2.13.3+dfsg-1) ... 121s Setting up libann-cctbx0 (1.1.2+doc-9build1) ... 121s Setting up libepoxy0:s390x (1.5.10-2) ... 121s Setting up libxfixes3:s390x (1:6.0.0-2build1) ... 121s Setting up libxcb-sync1:s390x (1.17.0-2) ... 121s Setting up python3-brotli (1.1.0-2build4) ... 121s Setting up libavahi-common-data:s390x (0.8-16ubuntu1) ... 121s Setting up libatspi2.0-0t64:s390x (2.55.90-1) ... 121s Setting up liblzf1:s390x (3.6-4) ... 121s Setting up python3-cycler (0.12.1-1) ... 121s Setting up libxinerama1:s390x (2:1.1.4-3build1) ... 121s Setting up libimagequant0:s390x (2.18.0-1build1) ... 121s Setting up pymol-data (3.0.0+dfsg-3build2) ... 121s Setting up libxkbcommon-x11-0:s390x (1.7.0-2) ... 121s Setting up fonts-dejavu-mono (2.37-8) ... 121s Setting up python3-kiwisolver (1.4.7-3build1) ... 121s Setting up libmpc3:s390x (1.3.1-1build2) ... 121s Setting up python3-numpy-dev:s390x (1:2.2.3+ds-4) ... 121s Setting up libxrandr2:s390x (2:1.5.4-1) ... 121s Setting up libtcl8.6:s390x (8.6.16+dfsg-1) ... 121s Setting up fonts-dejavu-core (2.37-8) ... 121s Setting up libjpeg-turbo8:s390x (2.1.5-3ubuntu2) ... 121s Setting up libgfortran5:s390x (15-20250222-0ubuntu1) ... 121s Setting up libvulkan1:s390x (1.4.304.0-1) ... 121s Setting up python3-pluggy (1.5.0-1) ... 121s Setting up libwebp7:s390x (1.5.0-0.1) ... 121s Setting up libubsan1:s390x (15-20250222-0ubuntu1) ... 121s Setting up python3-legacy-cgi (2.6.2-1) ... 121s Setting up zlib1g-dev:s390x (1:1.3.dfsg+really1.3.1-1ubuntu1) ... 121s Setting up python3-pyqt5.sip (12.17.0-1build1) ... 121s Setting up libmtdev1t64:s390x (1.1.7-1) ... 121s Setting up libxshmfence1:s390x (1.3-1build5) ... 121s Setting up at-spi2-common (2.55.90-1) ... 121s Setting up libccp4c0t64:s390x (8.0.0-4) ... 121s Setting up libxcb-randr0:s390x (1.17.0-2) ... 121s Setting up libasan8:s390x (15-20250222-0ubuntu1) ... 121s Setting up libxslt1.1:s390x (1.1.39-0exp1ubuntu2) ... 121s Setting up libqt5sql5t64:s390x (5.15.15+dfsg-4ubuntu1) ... 121s Setting up libmd4c0:s390x (0.5.2-2) ... 121s Setting up libopenjp2-7:s390x (2.5.0-2ubuntu3) ... 121s Setting up libharfbuzz0b:s390x (10.2.0-1) ... 121s Setting up libthai-data (0.1.29-2build1) ... 121s Setting up python3-dateutil (2.9.0-3) ... 121s Setting up python3-flexcache (0.3-2) ... 121s Setting up libglu1-mesa:s390x (9.0.2-1.1build1) ... 121s Setting up libwayland-egl1:s390x (1.23.1-3) ... 121s Setting up libxss1:s390x (1:1.2.3-1build3) ... 121s Setting up libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... 121s Setting up libwxbase3.2-1t64:s390x (3.2.6+dfsg-2ubuntu1) ... 121s Setting up python3-mpmath (1.3.0-1) ... 122s Setting up libisl23:s390x (0.27-1) ... 122s Setting up python-matplotlib-data (3.8.3-7build1) ... 122s Setting up libwebpmux3:s390x (1.5.0-0.1) ... 122s Setting up libxcomposite1:s390x (1:0.4.6-1) ... 122s Setting up fonts-font-awesome (5.0.10+really4.7.0~dfsg-4.1) ... 122s Setting up sphinx-rtd-theme-common (3.0.2+dfsg-2) ... 122s Setting up libcc1-0:s390x (15-20250222-0ubuntu1) ... 122s Setting up python3-procrunner (2.3.3-2) ... 122s Setting up libsz2:s390x (1.1.3-1) ... 122s Setting up libitm1:s390x (15-20250222-0ubuntu1) ... 122s Setting up libjs-underscore (1.13.4~dfsg+~1.11.4-3) ... 122s Setting up libann-cctbx-dev (1.1.2+doc-9build1) ... 122s Setting up libwacom-common (2.14.0-1) ... 122s Setting up libwayland-client0:s390x (1.23.1-3) ... 122s Setting up libjpeg8:s390x (8c-2ubuntu11) ... 122s Setting up python3-sympy (1.13.3-5) ... 126s Setting up libice6:s390x (2:1.1.1-1) ... 126s Setting up mesa-libgallium:s390x (25.0.1-2ubuntu1) ... 126s Setting up liblapack3:s390x (3.12.1-2) ... 126s update-alternatives: using /usr/lib/s390x-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/s390x-linux-gnu/liblapack.so.3 (liblapack.so.3-s390x-linux-gnu) in auto mode 126s Setting up libqt5dbus5t64:s390x (5.15.15+dfsg-4ubuntu1) ... 126s Setting up libssm2:s390x (1.4.0-2build1) ... 126s Setting up libatk1.0-0t64:s390x (2.55.90-1) ... 126s Setting up libgbm1:s390x (25.0.1-2ubuntu1) ... 126s Setting up libwacom9:s390x (2.14.0-1) ... 126s Setting up fontconfig-config (2.15.0-2ubuntu1) ... 126s Setting up python3-pytest (8.3.4-1) ... 126s Setting up libxtst6:s390x (2:1.2.5-1) ... 126s Setting up libwebpdemux2:s390x (1.5.0-0.1) ... 126s Setting up libxcursor1:s390x (1:1.2.3-1) ... 126s Setting up libgl1-mesa-dri:s390x (25.0.1-2ubuntu1) ... 126s Setting up libqt5network5t64:s390x (5.15.15+dfsg-4ubuntu1) ... 126s Setting up libavahi-common3:s390x (0.8-16ubuntu1) ... 126s Setting up libqt5xml5t64:s390x (5.15.15+dfsg-4ubuntu1) ... 126s Setting up dconf-service (0.40.0-5) ... 126s Setting up libqt5test5t64:s390x (5.15.15+dfsg-4ubuntu1) ... 126s Setting up libccp4f0t64:s390x (8.0.0-4) ... 126s Setting up libinput-bin (1.27.1-1) ... 126s Setting up python3-pint (0.24.4-1) ... 126s Setting up libthai0:s390x (0.1.29-2build1) ... 126s Setting up libegl-mesa0:s390x (25.0.1-2ubuntu1) ... 126s Setting up libjs-jquery-ui (1.13.2+dfsg-1) ... 126s Setting up libraqm0:s390x (0.10.2-1) ... 126s Setting up libpython3.13-dev:s390x (3.13.2-1) ... 126s Setting up python3-numpy (1:2.2.3+ds-4) ... 128s Setting up libjs-sphinxdoc (8.1.3-4) ... 128s Setting up cpp-14-s390x-linux-gnu (14.2.0-17ubuntu3) ... 128s Setting up cpp-14 (14.2.0-17ubuntu3) ... 128s Setting up libhdf5-310:s390x (1.14.5+repack-3) ... 128s Setting up python3-lxml:s390x (5.3.1-1build1) ... 128s Setting up libtiff6:s390x (4.5.1+git230720-4ubuntu4) ... 128s Setting up libwayland-cursor0:s390x (1.23.1-3) ... 128s Setting up libegl1:s390x (1.7.0-1build1) ... 128s Setting up libgdk-pixbuf-2.0-0:s390x (2.42.12+dfsg-2) ... 128s Setting up python3-contourpy (1.3.1-1build1) ... 128s Setting up libfontconfig1:s390x (2.15.0-2ubuntu1) ... 128s Setting up libgcc-14-dev:s390x (14.2.0-17ubuntu3) ... 128s Setting up libstdc++-14-dev:s390x (14.2.0-17ubuntu3) ... 128s Setting up libsm6:s390x (2:1.2.4-1) ... 128s Setting up libavahi-client3:s390x (0.8-16ubuntu1) ... 128s Setting up liblbfgsb0:s390x (3.0+dfsg.4-1build1) ... 128s Setting up python3-mrcfile (1.5.4-2) ... 128s Setting up libatk-bridge2.0-0t64:s390x (2.55.90-1) ... 128s Setting up libinput10:s390x (1.27.1-1) ... 128s Setting up gtk-update-icon-cache (4.17.5+ds-3ubuntu1) ... 128s Setting up libhdf5-hl-310:s390x (1.14.5+repack-3) ... 128s Setting up fontconfig (2.15.0-2ubuntu1) ... 130s Regenerating fonts cache... done. 130s Setting up libxft2:s390x (2.3.6-1build1) ... 130s Setting up libboost1.83-dev:s390x (1.83.0-4.1ubuntu1) ... 130s Setting up libglx-mesa0:s390x (25.0.1-2ubuntu1) ... 130s Setting up python3-scipy (1.14.1-4ubuntu2) ... 132s Setting up libpython3-dev:s390x (3.13.2-2) ... 132s Setting up libcbf1t64:s390x (0.9.7+dfsg1-5build1) ... 132s Setting up libglx0:s390x (1.7.0-1build1) ... 132s Setting up dconf-gsettings-backend:s390x (0.40.0-5) ... 132s Setting up cpp-s390x-linux-gnu (4:14.2.0-1ubuntu1) ... 132s Setting up libccp4-dev:s390x (8.0.0-4) ... 132s Setting up python3.13-dev (3.13.2-1) ... 132s Setting up libtk8.6:s390x (8.6.16-1) ... 132s Setting up libpango-1.0-0:s390x (1.56.1-1) ... 132s Setting up python3.12-tk (3.12.9-1) ... 132s Setting up libnetcdf22:s390x (1:4.9.3-1) ... 132s Setting up python3-h5py-serial (3.13.0-1) ... 132s Setting up libcairo2:s390x (1.18.2-2) ... 132s Setting up python3.13-tk (3.13.2-1) ... 133s Setting up python3-pil:s390x (11.1.0-5build1) ... 133s Setting up gcc-14-s390x-linux-gnu (14.2.0-17ubuntu3) ... 133s Setting up libgl1:s390x (1.7.0-1build1) ... 133s Setting up gcc-s390x-linux-gnu (4:14.2.0-1ubuntu1) ... 133s Setting up adwaita-icon-theme (48~beta-3) ... 133s update-alternatives: using /usr/share/icons/Adwaita/cursor.theme to provide /usr/share/icons/default/index.theme (x-cursor-theme) in auto mode 133s Setting up libnotify4:s390x (0.8.4-1) ... 133s Setting up python3-dev (3.13.2-2) ... 133s Setting up libboost-python1.83-dev (1.83.0-4.1ubuntu1) ... 133s Setting up python3-pycbf (0.9.7+dfsg1-5build1) ... 133s Setting up python3-h5py (3.13.0-1) ... 133s Setting up g++-14-s390x-linux-gnu (14.2.0-17ubuntu3) ... 133s Setting up libglew2.2:s390x (2.2.0-4build1) ... 133s Setting up python3-hdf5plugin (5.0.0-1) ... 133s Setting up cpp (4:14.2.0-1ubuntu1) ... 133s Setting up libcairo-gobject2:s390x (1.18.2-2) ... 133s Setting up libpangoft2-1.0-0:s390x (1.56.1-1) ... 133s Setting up python3-nxmx (0.0.4-1) ... 133s Setting up libcups2t64:s390x (2.4.11-0ubuntu2) ... 133s Setting up libgtk-3-common (3.24.48-3ubuntu1) ... 133s Setting up libpangocairo-1.0-0:s390x (1.56.1-1) ... 133s Setting up libcctbx0 (2024.10+ds2+~3.22.1+ds1-4build2) ... 133s Setting up tk8.6-blt2.5 (2.5.3+dfsg-8) ... 133s Setting up blt (2.5.3+dfsg-8) ... 133s Setting up python3-tk:s390x (3.13.1-1) ... 133s Setting up g++-s390x-linux-gnu (4:14.2.0-1ubuntu1) ... 133s Setting up python3-opengl (3.1.7+dfsg-1) ... 133s /usr/lib/python3/dist-packages/OpenGL/GL/AMD/vertex_shader_tessellator.py:1: SyntaxWarning: invalid escape sequence '\ ' 133s '''OpenGL extension AMD.vertex_shader_tessellator 134s Setting up gcc-14 (14.2.0-17ubuntu3) ... 134s Setting up libboost-python-dev (1.83.0.2ubuntu1) ... 134s Setting up libqt5gui5t64:s390x (5.15.15+dfsg-4ubuntu1) ... 134s Setting up python3-pil.imagetk:s390x (11.1.0-5build1) ... 134s Setting up g++-14 (14.2.0-17ubuntu3) ... 134s Setting up libcctbx-dev (2024.10+ds2+~3.22.1+ds1-4build2) ... 134s Setting up libqt5widgets5t64:s390x (5.15.15+dfsg-4ubuntu1) ... 134s Setting up libqt5help5:s390x (5.15.15-6build1) ... 134s Setting up gcc (4:14.2.0-1ubuntu1) ... 134s Setting up g++ (4:14.2.0-1ubuntu1) ... 134s update-alternatives: using /usr/bin/g++ to provide /usr/bin/c++ (c++) in auto mode 134s Setting up libqt5opengl5t64:s390x (5.15.15+dfsg-4ubuntu1) ... 134s Setting up libqt5printsupport5t64:s390x (5.15.15+dfsg-4ubuntu1) ... 134s Setting up libqt5designer5:s390x (5.15.15-6build1) ... 134s Setting up python3-pyqt5 (5.15.11+dfsg-2) ... 134s Setting up python3-pyqt5.qtopengl (5.15.11+dfsg-2) ... 134s Setting up python3-pymol (3.0.0+dfsg-3build2) ... 135s Setting up python3-fonttools (4.55.3-2build1) ... 135s Setting up python3-ufolib2 (0.17.0+dfsg1-1) ... 135s Setting up python3-matplotlib (3.8.3-7build1) ... 136s Processing triggers for libc-bin (2.41-1ubuntu1) ... 136s Processing triggers for man-db (2.13.0-1) ... 137s Processing triggers for libglib2.0-0t64:s390x (2.84.0-1) ... 137s Setting up libgtk-3-0t64:s390x (3.24.48-3ubuntu1) ... 137s Processing triggers for udev (257.3-1ubuntu3) ... 138s Setting up libwxgtk3.2-1t64:s390x (3.2.6+dfsg-2ubuntu1) ... 138s Setting up libwxgtk-gl3.2-1t64:s390x (3.2.6+dfsg-2ubuntu1) ... 138s Setting up python3-wxgtk4.0 (4.2.2+dfsg-3build1) ... 139s Setting up python3-cctbx (2024.10+ds2+~3.22.1+ds1-4build2) ... 141s /usr/lib/python3/dist-packages/iotbx/pdb/utils.py:8: SyntaxWarning: invalid escape sequence '\{' 141s """ Iterator to generate strings of length n_chars, using upper-case, 141s /usr/lib/python3/dist-packages/iotbx/pdb/utils.py:46: SyntaxWarning: invalid escape sequence '\/' 141s special_characters = """[]_,.;:"&<>()\/\{}'`~!@#$%*|+-""" 148s /usr/lib/python3/dist-packages/xfel/merging/application/errors/error_modifier_mm24.py:724: SyntaxWarning: invalid escape sequence '\o' 148s width=pairwise_differences_db, label='$\omega_{hkl}$' 148s /usr/lib/python3/dist-packages/xfel/merging/application/errors/error_modifier_mm24.py:739: SyntaxWarning: invalid escape sequence '\o' 148s axes[0].set_ylabel('Distribution of $\omega_{hbk}$') 148s /usr/lib/python3/dist-packages/xfel/merging/application/errors/error_modifier_mm24.py:740: SyntaxWarning: invalid escape sequence '\o' 148s axes[0].set_xlabel('Normalized PD ($\omega_{hbk}$)') 148s /usr/lib/python3/dist-packages/xfel/merging/application/errors/error_modifier_mm24.py:759: SyntaxWarning: invalid escape sequence '\o' 148s axes[1].set_xlabel('Sorted Normalized PD ($\omega_{hbk}$)') 148s /usr/lib/python3/dist-packages/xfel/merging/application/errors/error_modifier_mm24.py:778: SyntaxWarning: invalid escape sequence '\s' 148s axes[2].set_ylabel('Standard Deviation of $I_{hbk}/\sigma_{hbk}$') 148s /usr/lib/python3/dist-packages/xfel/merging/application/errors/error_modifier_mm24.py:807: SyntaxWarning: invalid escape sequence '\m' 148s axes_sadd.set_ylabel('$s_{\mathrm{fac}}^2 \\times s_{\mathrm{add}}^2$') 148s Processing triggers for libc-bin (2.41-1ubuntu1) ... 149s autopkgtest [12:28:15]: test cctbx: [----------------------- 149s Testing cctbx with python3.13: 150s Running 546 tests on 2 processors: 150s libtbx.python "/usr/lib/python3/dist-packages/annlib_adaptbx/annlib_adaptbx/sample.py" 150s libtbx.python "/usr/lib/python3/dist-packages/annlib_adaptbx/annlib_adaptbx/self_match.py" 150s "/usr/lib/cctbx/python3.13/boost_adaptbx/tests/tst_optional_copy" 150s libtbx.python "/usr/lib/python3/dist-packages/boost_adaptbx/tests/tst_libc_backtrace.py" 150s libtbx.python "/usr/lib/python3/dist-packages/boost_adaptbx/tests/tst_rational.py" 150s libtbx.python "/usr/lib/python3/dist-packages/boost_adaptbx/tests/tst_optional.py" 150s libtbx.python "/usr/lib/python3/dist-packages/boost_adaptbx/tests/tst_std_pair.py" 150s libtbx.python "/usr/lib/python3/dist-packages/boost_adaptbx/tests/tst_tuple.py" 150s libtbx.python "/usr/lib/python3/dist-packages/boost_adaptbx/tests/tst_stdout.py" 150s libtbx.python "/usr/lib/python3/dist-packages/boost_adaptbx/tests/tst_stderr_stdout.py" 150s libtbx.python "/usr/lib/python3/dist-packages/boost_adaptbx/tests/tst_deprecation_tools.py" 150s libtbx.python "/usr/lib/python3/dist-packages/boost_adaptbx/tests/tst_python_streambuf.py" 150s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_sf_low_res_accuracy.py" 150s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_miller_double_step_filtration.py" 150s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_map_is_periodic.py" 150s libtbx.python "/usr/lib/python3/dist-packages/cctbx/miller/tst_reindexing.py" 150s libtbx.python "/usr/lib/python3/dist-packages/cctbx/miller/tst_map_to_asu_isym.py" 150s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_miller_data_manipulation.py" 150s libtbx.python "/usr/lib/python3/dist-packages/cctbx/omz/tst_bfgs.py" 150s libtbx.python "/usr/lib/python3/dist-packages/cctbx/omz/tst_dev.py" P31 150s libtbx.python "/usr/lib/python3/dist-packages/cctbx/geometry/tests/tst_geometry.py" 150s libtbx.python "/usr/lib/python3/dist-packages/cctbx/covariance/tests/tst_covariance.py" 150s libtbx.python "/usr/lib/python3/dist-packages/cctbx/symmetry_search/tests/tst_goodness_of_symmetry.py" 150s libtbx.python "/usr/lib/python3/dist-packages/cctbx/symmetry_search/tests/tst_from_map.py" P312 150s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_adp_aniso_restraints.py" 150s libtbx.python "/usr/lib/python3/dist-packages/cctbx/math/boost_python/tst_math.py" 150s libtbx.python "/usr/lib/python3/dist-packages/cctbx/xray/boost_python/tst_targets_fd.py" 150s libtbx.python "/usr/lib/python3/dist-packages/cctbx/xray/boost_python/tst_xray.py" 150s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_xray.py" I41/acd 150s libtbx.python "/usr/lib/python3/dist-packages/cctbx/xray/targets/tst_r1.py" 150s libtbx.python "/usr/lib/python3/dist-packages/cctbx/xray/targets/tst_shelxl_wght_ls.py" 150s libtbx.python "/usr/lib/python3/dist-packages/cctbx/xray/boost_python/tst_f_model.py" 150s libtbx.python "/usr/lib/python3/dist-packages/cctbx/array_family/boost_python/tst_flex.py" 150s libtbx.python "/usr/lib/python3/dist-packages/cctbx/uctbx/boost_python/tst_uctbx.py" 150s libtbx.python "/usr/lib/python3/dist-packages/cctbx/uctbx/boost_python/tst_crystal_orientation.py" 150s libtbx.python "/usr/lib/python3/dist-packages/cctbx/sgtbx/boost_python/tst_sgtbx.py" 150s libtbx.python "/usr/lib/python3/dist-packages/cctbx/sgtbx/boost_python/tst_N_fold_rot.py" 150s libtbx.python "/usr/lib/python3/dist-packages/cctbx/crystal/tst_ext.py" 150s libtbx.python "/usr/lib/python3/dist-packages/cctbx/crystal/tst_distance_based_connectivity.py" 150s libtbx.python "/usr/lib/python3/dist-packages/cctbx/crystal/tst_super_cell.py" 150s libtbx.python "/usr/lib/python3/dist-packages/cctbx/adptbx/boost_python/tst_adptbx.py" 150s libtbx.python "/usr/lib/python3/dist-packages/cctbx/miller/boost_python/tst_miller.py" 150s libtbx.python "/usr/lib/python3/dist-packages/cctbx/eltbx/tests/tst_chemical_elements.py" 150s libtbx.python "/usr/lib/python3/dist-packages/cctbx/eltbx/tests/tst_xray_scattering.py" 150s libtbx.python "/usr/lib/python3/dist-packages/cctbx/eltbx/tests/tst_henke.py" 150s libtbx.python "/usr/lib/python3/dist-packages/cctbx/eltbx/tests/tst_icsd_radii.py" 150s libtbx.python "/usr/lib/python3/dist-packages/cctbx/eltbx/tests/tst_covalent_radii.py" 150s libtbx.python "/usr/lib/python3/dist-packages/cctbx/eltbx/tests/tst_neutron.py" 150s libtbx.python "/usr/lib/python3/dist-packages/cctbx/eltbx/tests/tst_sasaki.py" 150s libtbx.python "/usr/lib/python3/dist-packages/cctbx/eltbx/tests/tst_tiny_pse.py" 150s libtbx.python "/usr/lib/python3/dist-packages/cctbx/eltbx/tests/tst_wavelengths.py" 150s libtbx.python "/usr/lib/python3/dist-packages/cctbx/eltbx/tests/tst_formula.py" 150s libtbx.python "/usr/lib/python3/dist-packages/cctbx/eltbx/tests/tst_attenuation_coefficient.py" 150s libtbx.python "/usr/lib/python3/dist-packages/cctbx/maptbx/boost_python/tst_maptbx.py" 150s libtbx.python "/usr/lib/python3/dist-packages/cctbx/maptbx/tst_bcr.py" 150s libtbx.python "/usr/lib/python3/dist-packages/cctbx/maptbx/tst_loft.py" 150s libtbx.python "/usr/lib/python3/dist-packages/cctbx/dmtbx/boost_python/tst_dmtbx.py" 150s libtbx.python "/usr/lib/python3/dist-packages/cctbx/translation_search/boost_python/tst_translation_search.py" 150s libtbx.python "/usr/lib/python3/dist-packages/cctbx/geometry_restraints/tst_ext.py" 150s libtbx.python "/usr/lib/python3/dist-packages/cctbx/geometry_restraints/tst_proxy_registry.py" 150s libtbx.python "/usr/lib/python3/dist-packages/cctbx/geometry_restraints/tst_nonbonded_overlaps.py" 150s libtbx.python "/usr/lib/python3/dist-packages/cctbx/geometry_restraints/tst_process_nonbonded_proxies.py" 150s libtbx.python "/usr/lib/python3/dist-packages/cctbx/geometry_restraints/tst_angle_derivs.py" 150s libtbx.python "/usr/lib/python3/dist-packages/cctbx/geometry_restraints/tst_motif.py" 150s libtbx.python "/usr/lib/python3/dist-packages/cctbx/adp_restraints/tst_ext.py" 150s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_math_module.py" 150s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_krivy_gruber.py" --Quick 150s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_sgtbx.py" 150s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_itvb_2001_table_a1427_hall_symbols.py" 150s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_space_group_type_tidy_cb_op_t.py" 150s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_sgtbx_denominators.py" P31 150s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_sgtbx_subgroups.py" 150s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_sgtbx_lattice_symmetry.py" 150s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_adp_constraints.py" P3 150s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_adp_constraints_cartesian.py" 150s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_sgtbx_site_constraints.py" 150s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_reflection_statistics.py" 150s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_sgtbx_harker.py" 150s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_sgtbx_special_op_simplifier.py" 150s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_twin_target.py" 150s libtbx.python "/usr/lib/python3/dist-packages/cctbx/sgtbx/symbol_confidence.py" 150s libtbx.python "/usr/lib/python3/dist-packages/cctbx/sgtbx/bravais_types.py" 150s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_miller_lookup_utils.py" 150s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_crystal.py" I41/acd 150s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_direct_space_asu.py" I41/acd 150s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_pair_asu_table.py" 150s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_crystal_asu_clusters.py" 150s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_coordination_sequences.py" 150s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_crystal_close_packing.py" R-3mr 150s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_fourier_transform_real_part_at_x.py" P31 150s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_miller.py" P31 150s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_mem.py" 150s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_mem_2.py" 150s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_reciprocal_space_asu.py" P312 150s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_triplet_generator.py" P41 150s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_emma.py" P31 150s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_expand_to_p1.py" P31 150s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_change_basis.py" P31 150s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_wilson_plot.py" P31 150s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_xray_derivatives.py" P31 150s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_xray_fast_gradients.py" P31 150s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_xray_minimization.py" --F P31 150s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_xray_minimization.py" --F_sq P31 150s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_maptbx_structure_factors.py" P31 150s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_map_weights_for_symmetry_summation.py" Pmmm 150s libtbx.python "/usr/lib/python3/dist-packages/cctbx/maptbx/tst_real_space_refinement_simple.py" 150s libtbx.python "/usr/lib/python3/dist-packages/cctbx/maptbx/tst_interpolation.py" 150s libtbx.python "/usr/lib/python3/dist-packages/cctbx/maptbx/tst_interpolation_2.py" 150s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_loc_res.py" 150s libtbx.python "/usr/lib/python3/dist-packages/cctbx/maptbx/tst_target_and_gradients.py" 150s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_miller_merge_equivalents.py" P31 150s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_grouped_data.py" P31 150s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_miller_fft_map.py" P31 150s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_sampled_model_density.py" P31 150s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_fast_nv1995.py" F222 150s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_geometry_restraints.py" 150s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_geometry_restraints_lbfgs.py" 150s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_geometry_restraints_2.py" 150s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_grm_pickling.py" 150s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_french_wilson.py" 150s libtbx.python "/usr/lib/python3/dist-packages/cctbx/development/make_cns_input.py" P31 150s libtbx.python "/usr/lib/python3/dist-packages/cctbx/development/tst_cns_epsilon.py" P31 150s libtbx.python "/usr/lib/python3/dist-packages/cctbx/development/tst_cns_hl.py" P31 150s libtbx.python "/usr/lib/python3/dist-packages/cctbx/development/run_shelx76.py" P31 150s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_pointgroup_tools.py" 150s libtbx.python "/usr/lib/python3/dist-packages/cctbx/sgtbx/sub_lattice_tools.py" 150s libtbx.python "/usr/lib/python3/dist-packages/cctbx/sgtbx/rational_matrices_point_groups.py" 150s libtbx.python "/usr/lib/python3/dist-packages/cctbx/sgtbx/cosets.py" 150s libtbx.python "/usr/lib/python3/dist-packages/cctbx/sgtbx/reticular_pg_tools.py" 150s libtbx.python "/usr/lib/python3/dist-packages/cctbx/sgtbx/reticular_twin_laws.py" 150s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_find_best_cell.py" 150s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_amplitude_normalisation.py" 150s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_statistics_graphs.py" 150s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_web_change_basis.py" 150s libtbx.python "/usr/lib/python3/dist-packages/cctbx/sgtbx/direct_space_asu/proto/tst_asu.py" 150s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_sgtbx_tidy_pickling.py" 150s libtbx.python "/usr/lib/python3/dist-packages/cctbx/masks/tests/tst_flood_fill.py" 150s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_r_free_utils.py" 150s libtbx.python "/usr/lib/python3/dist-packages/cctbx/xray/observations/tst_observations.py" 150s libtbx.python "/usr/lib/python3/dist-packages/cctbx/maptbx/tst_ccp.py" 150s libtbx.python "/usr/lib/python3/dist-packages/cctbx/maptbx/tst_mask.py" 150s libtbx.python "/usr/lib/python3/dist-packages/cctbx/maptbx/tst_map_peak_3d_as_2d.py" 150s libtbx.python "/usr/lib/python3/dist-packages/cctbx/maptbx/tst_asymmetric_map.py" 150s libtbx.python "/usr/lib/python3/dist-packages/cctbx/maptbx/tst_peak_volume_estimate.py" 150s libtbx.python "/usr/lib/python3/dist-packages/cctbx/maptbx/tst_resolution_from_map_and_model.py" 150s libtbx.python "/usr/lib/python3/dist-packages/cctbx/maptbx/tst_atom_curves.py" 150s libtbx.python "/usr/lib/python3/dist-packages/cctbx/maptbx/tst_atom_radius_as_central_peak_width.py" 150s libtbx.python "/usr/lib/python3/dist-packages/cctbx/maptbx/tst_get_percentile_cutoffs.py" 150s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_maptbx_box.py" 150s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_create_models_or_maps.py" 150s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_sphericity.py" 150s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_miller_statistics.py" 150s libtbx.python "/usr/lib/python3/dist-packages/cctbx/merging/brehm_diederichs.py" 150s libtbx.python "/usr/lib/python3/dist-packages/cctbx/multipolar/regression/tst_multipolar.py" 150s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_connectivity.py" 150s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_connectivity_allsym.py" 150s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_diffuse.py" 150s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_grm_modifications.py" 150s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_prepare_map_for_docking.py" 150s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_wavelength_units.py" 150s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_fcalc_fft_stability.py" 150s libtbx.python "/usr/lib/python3/dist-packages/cma_es/tst_cma_es.py" 150s libtbx.python "/usr/lib/python3/dist-packages/fable/tst_ext.py" 150s libtbx.python "/usr/lib/python3/dist-packages/fable/tst_equivalence.py" 150s libtbx.python "/usr/lib/python3/dist-packages/fable/tst_read.py" 150s libtbx.python "/usr/lib/python3/dist-packages/fable/tst_cout.py" 150s libtbx.python "/usr/lib/python3/dist-packages/fable/test/tst_show_calls.py" 150s libtbx.python "/usr/lib/python3/dist-packages/fable/test/tst_command_line.py" 150s libtbx.python "/usr/lib/python3/dist-packages/fable/test/tst_separate_files.py" 150s libtbx.python "/usr/lib/python3/dist-packages/fable/tst_cout_compile.py" stop 150s libtbx.python "/usr/lib/python3/dist-packages/fable/test/tst_io.py" 150s libtbx.python "/usr/lib/python3/dist-packages/gltbx/tst_ellipsoids.py" 150s libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_mrc_io.py" 150s libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_wildcard.py" 150s libtbx.python "/usr/lib/python3/dist-packages/iotbx/gui_tools/tst.py" 150s libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_simple_parser.py" 150s libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_phil.py" 150s libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_pdb_cif_inputs.py" 150s libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_data_manager.py" 150s libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_map_manager_wrapping.py" 150s libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_map_manager.py" 150s libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_map_model_manager.py" 150s libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_map_model_manager_2.py" 150s libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_map_model_manager_3.py" 150s libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_map_model_manager_4.py" 150s libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_map_model_manager_model_sharpening_5.py" 150s libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_map_model_manager_model_sharpening_5_cif.py" 150s libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_map_model_manager_call_consistency.py" 150s libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_map_model_manager_external_sharpening_7.py" 150s libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_map_model_manager_half_map_sharpening_6.py" 150s libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_map_model_manager_tls_from_map_8.py" 150s libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_map_model_manager_cif.py" 150s libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_map_model_manager_9_remove_origin_shift_and_unit_cell_crystal_symmetry.py" 150s libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_map_model_manager_9_remove_origin_shift_and_unit_cell_crystal_symmetry_cif.py" 150s libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_map_model_manager_local_resolution_10.py" 150s libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_map_tools.py" 150s libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_patterson.py" 150s libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_restraints_merge.py" 150s libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_atom_selections_10k.py" 150s libtbx.python "/usr/lib/python3/dist-packages/iotbx/ranges.py" 150s libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_crystal_symmetry_from_any.py" 150s libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_poscar.py" 150s libtbx.python "/usr/lib/python3/dist-packages/iotbx/kriber/tst_strudat.py" 150s libtbx.python "/usr/lib/python3/dist-packages/iotbx/cif/tests/tst_geometry.py" 150s libtbx.python "/usr/lib/python3/dist-packages/iotbx/cif/tests/tst_lex_parse_build.py" 150s libtbx.python "/usr/lib/python3/dist-packages/iotbx/cif/tests/tst_model.py" 150s libtbx.python "/usr/lib/python3/dist-packages/iotbx/cif/tests/tst_restraints.py" 150s libtbx.python 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150s libtbx.python "/usr/lib/python3/dist-packages/iotbx/pdb/modified_aa_names.py" 150s libtbx.python "/usr/lib/python3/dist-packages/iotbx/pdb/modified_rna_dna_names.py" 150s libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/secondary_structure/tst_sheet.py" 150s libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/secondary_structure/tst_annotation.py" 150s libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/secondary_structure/tst_annotation_long.py" 150s libtbx.python "/usr/lib/python3/dist-packages/iotbx/pdb/secondary_structure.py" 150s libtbx.python "/usr/lib/python3/dist-packages/iotbx/pdb/tst_atom_selection_string.py" 150s libtbx.python "/usr/lib/python3/dist-packages/iotbx/pdb/tst_secondary_structure.py" 150s libtbx.python "/usr/lib/python3/dist-packages/iotbx/pdb/tst_utils.py" 150s libtbx.python "/usr/lib/python3/dist-packages/iotbx/pdb/tst_secondary_structure_2.py" 150s libtbx.python 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150s libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_lattice_symmetry.py" 150s libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_reflection_statistics.py" Fdd2 P31m 150s libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_data_plots.py" 150s libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_csv_utils.py" 150s libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_file_reader.py" 150s libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_bioinformatics.py" 150s libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_box_around_molecule.py" 150s libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_mmcif_segids.py" 150s libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_mmcif_input.py" 150s libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_hierarchy_forward_compatible_pdb.py" 150s libtbx.python 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libtbx.python "/usr/lib/python3/dist-packages/iotbx/xds/tests/tst_xparm.py" 150s libtbx.python "/usr/lib/python3/dist-packages/iotbx/xds/tests/tst_xds_inp.py" 150s libtbx.python "/usr/lib/python3/dist-packages/iotbx/xds/tests/tst_integrate_hkl.py" 150s libtbx.python "/usr/lib/python3/dist-packages/iotbx/xds/tests/tst_spots_xds.py" 150s libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_pdb_as_cif.py" 150s libtbx.python "/usr/lib/python3/dist-packages/iotbx/scalepack/tst_no_merge_original_index.py" 150s libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_export_scalepack_unmerged.py" 150s libtbx.python "/usr/lib/python3/dist-packages/iotbx/dsn6/tst.py" P31 150s libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/ncs/tst_mtrix_biomt_cmdl.py" 150s libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/ncs/tst_mmcif_biomt_reduction_output.py" 150s libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/ncs/tst_ncs_search_ligs.py" 150s libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/ncs/tst_ncs_search_broken_chain.py" 150s libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/ncs/tst_ncs_search_shortcut_1.py" 150s libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/ncs/tst_ncs_groups_preprocessing.py" 150s libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/ncs/tst_ncs_input.py" 150s libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/ncs/tst_ncs_user_selections.py" 150s libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/ncs/tst_ncs.py" 150s libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/ncs/tst_ncs_without_validation.py" 150s libtbx.python "/usr/lib/python3/dist-packages/iotbx/pdb/tst_read_mtrix_records_from_cif.py" 150s libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_show_systematic_absences.py" 150s libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_miller_sort_asu.py" 150s libtbx.python 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"/usr/lib/cctbx/python3.13/scitbx/array_family/tst_rectangular_full_packed" 150s libtbx.python "/usr/lib/python3/dist-packages/scitbx/array_family/boost_python/tst_flex_argument_passing.py" 150s "/usr/lib/cctbx/python3.13/scitbx/serialization/tst_base_256" 150s libtbx.python "/usr/lib/python3/dist-packages/scitbx/math/tests/tst_minimum_covering_ellipsoid.py" 150s libtbx.python "/usr/lib/python3/dist-packages/scitbx/math/tests/tst_gaussian_fit_1d_analytical.py" 150s libtbx.python "/usr/lib/python3/dist-packages/scitbx/math/tests/tst_cubic_equation.py" 150s "/usr/lib/cctbx/python3.13/scitbx/math/tests/tst" 150s "/usr/lib/cctbx/python3.13/scitbx/matrix/tests/tst_givens" 150s "/usr/lib/cctbx/python3.13/scitbx/matrix/tests/tst_householder" 150s "/usr/lib/cctbx/python3.13/scitbx/matrix/tests/tst_svd" 150s "/usr/lib/cctbx/python3.13/scitbx/matrix/tests/tst_cholesky" 150s libtbx.python "/usr/lib/python3/dist-packages/scitbx/matrix/tests/tst_row_echelon.py" 150s libtbx.python "/usr/lib/python3/dist-packages/scitbx/matrix/tests/tst_householder.py" 150s libtbx.python "/usr/lib/python3/dist-packages/scitbx/linalg/tests/tst_matrix.py" 150s libtbx.python "/usr/lib/python3/dist-packages/scitbx/linalg/tests/tst_cholesky.py" 150s libtbx.python "/usr/lib/python3/dist-packages/scitbx/linalg/tests/tst_svd.py" 150s libtbx.python "/usr/lib/python3/dist-packages/scitbx/linalg/tests/tst_eigensystem.py" 150s libtbx.python "/usr/lib/python3/dist-packages/scitbx/linalg/tests/tst_lapack_svd.py" 150s libtbx.python "/usr/lib/python3/dist-packages/scitbx/linalg/tests/tst_lapack_dsyev.py" 150s libtbx.python "/usr/lib/python3/dist-packages/scitbx/error/tst_error.py" 150s libtbx.python "/usr/lib/python3/dist-packages/scitbx/stl/tst_map.py" 150s libtbx.python "/usr/lib/python3/dist-packages/scitbx/stl/tst_set.py" 150s libtbx.python "/usr/lib/python3/dist-packages/scitbx/stl/tst_vector.py" 150s libtbx.python "/usr/lib/python3/dist-packages/scitbx/array_family/boost_python/regression_test.py" 150s libtbx.python "/usr/lib/python3/dist-packages/scitbx/array_family/boost_python/tst_flex.py" 150s libtbx.python "/usr/lib/python3/dist-packages/scitbx/array_family/boost_python/tst_numpy_bridge.py" 150s libtbx.python "/usr/lib/python3/dist-packages/scitbx/array_family/boost_python/tst_smart_selection.py" 150s libtbx.python "/usr/lib/python3/dist-packages/scitbx/array_family/boost_python/tst_shared.py" 150s libtbx.python "/usr/lib/python3/dist-packages/scitbx/array_family/boost_python/tst_integer_offsets_vs_pointers.py" 150s libtbx.python "/usr/lib/python3/dist-packages/scitbx/array_family/boost_python/tst_cost_of_m_handle_in_af_shared.py" 150s libtbx.python "/usr/lib/python3/dist-packages/scitbx/tests/tst_cubicle_neighbors.py" 150s libtbx.python "/usr/lib/python3/dist-packages/scitbx/tests/tst_r3_utils.py" 150s libtbx.python "/usr/lib/python3/dist-packages/scitbx/tests/tst_regular_grid_on_unit_sphere.py" 150s libtbx.python "/usr/lib/python3/dist-packages/scitbx/matrix/__init__.py" 150s libtbx.python "/usr/lib/python3/dist-packages/scitbx/python_utils/tst_random_transform.py" 150s libtbx.python "/usr/lib/python3/dist-packages/scitbx/python_utils/tst_graph.py" 150s libtbx.python "/usr/lib/python3/dist-packages/scitbx/python_utils/tst_robust.py" 150s libtbx.python "/usr/lib/python3/dist-packages/scitbx/math/superpose.py" 150s libtbx.python "/usr/lib/python3/dist-packages/scitbx/math/spe.py" 150s libtbx.python "/usr/lib/python3/dist-packages/scitbx/math/incremental_SO3_sampling.py" 150s libtbx.python "/usr/lib/python3/dist-packages/scitbx/math/tests/tst_curve_fitting.py" 150s libtbx.python "/usr/lib/python3/dist-packages/scitbx/math/tests/tst_weighted_correlation.py" 150s libtbx.python "/usr/lib/python3/dist-packages/scitbx/math/tests/tst_similarity_indices.py" 150s libtbx.python "/usr/lib/python3/dist-packages/scitbx/math/tests/tst_exp_functions.py" 150s libtbx.python "/usr/lib/python3/dist-packages/scitbx/math/tests/tst_fit_quadratic_function.py" 150s libtbx.python "/usr/lib/python3/dist-packages/scitbx/math/tests/tst_gcd.py" 150s libtbx.python "/usr/lib/python3/dist-packages/scitbx/math/tests/tst_math.py" 150s libtbx.python "/usr/lib/python3/dist-packages/scitbx/math/tests/tst_r3_rotation.py" 150s libtbx.python "/usr/lib/python3/dist-packages/scitbx/math/tests/tst_resample.py" 150s libtbx.python "/usr/lib/python3/dist-packages/scitbx/math/tests/tst_line_search.py" 150s libtbx.python "/usr/lib/python3/dist-packages/scitbx/math/tests/tst_gaussian.py" 150s libtbx.python "/usr/lib/python3/dist-packages/scitbx/math/tests/tst_quadrature.py" 150s libtbx.python "/usr/lib/python3/dist-packages/scitbx/math/tests/tst_bessel.py" 150s libtbx.python "/usr/lib/python3/dist-packages/scitbx/math/tests/tst_halton.py" 150s libtbx.python "/usr/lib/python3/dist-packages/scitbx/math/tests/tst_euler_angles.py" 150s libtbx.python "/usr/lib/python3/dist-packages/scitbx/math/tests/tst_superpose.py" 150s libtbx.python "/usr/lib/python3/dist-packages/scitbx/math/tests/tst_uniform_rotation_matrix.py" 150s libtbx.python "/usr/lib/python3/dist-packages/scitbx/math/tst_zernike.py" 150s libtbx.python "/usr/lib/python3/dist-packages/scitbx/math/tst_zernike_mom.py" 150s libtbx.python "/usr/lib/python3/dist-packages/scitbx/math/sieve_of_eratosthenes.py" 150s libtbx.python "/usr/lib/python3/dist-packages/scitbx/math/besselk.py" 150s libtbx.python "/usr/lib/python3/dist-packages/scitbx/math/scale_curves.py" 150s libtbx.python "/usr/lib/python3/dist-packages/scitbx/math/tests/tst_fit_peak.py" 150s libtbx.python "/usr/lib/python3/dist-packages/scitbx/math/tests/tst_clustering.py" 150s libtbx.python "/usr/lib/python3/dist-packages/scitbx/math/tests/tst_orthonormal_basis.py" 150s libtbx.python "/usr/lib/python3/dist-packages/scitbx/math/tests/tst_g_function.py" 150s libtbx.python "/usr/lib/python3/dist-packages/scitbx/math/tests/tst_angle_derivative.py" 150s libtbx.python "/usr/lib/python3/dist-packages/scitbx/math/tests/tst_periodogram.py" 150s libtbx.python "/usr/lib/python3/dist-packages/scitbx/math/tests/tst_error_propagation_matrix_inverse.py" 150s libtbx.python "/usr/lib/python3/dist-packages/scitbx/math/tests/tst_tetrahedron.py" 150s libtbx.python "/usr/lib/python3/dist-packages/scitbx/math/tst_undirected_graph.py" 150s libtbx.python "/usr/lib/python3/dist-packages/scitbx/math/tst_so3_lie_algebra.py" 150s libtbx.python "/usr/lib/python3/dist-packages/scitbx/minpack/tst.py" 150s libtbx.python "/usr/lib/python3/dist-packages/scitbx/lbfgs/tst_ext.py" 150s libtbx.python "/usr/lib/python3/dist-packages/scitbx/lbfgs/tst_curvatures.py" 150s libtbx.python "/usr/lib/python3/dist-packages/scitbx/lbfgs/tst_lbfgs_fem.py" 150s libtbx.python "/usr/lib/python3/dist-packages/scitbx/lbfgs/tst_func_free_line_search.py" 150s "/usr/lib/cctbx/python3.13/scitbx/lbfgs/tst_lbfgs" 150s libtbx.python "/usr/lib/python3/dist-packages/scitbx/lbfgsb/boost_python/tst_lbfgsb.py" 150s libtbx.python "/usr/lib/python3/dist-packages/scitbx/fftpack/boost_python/tst_fftpack.py" 150s libtbx.python "/usr/lib/python3/dist-packages/scitbx/examples/flex_grid.py" 150s libtbx.python "/usr/lib/python3/dist-packages/scitbx/examples/flex_array_loops.py" 150s libtbx.python "/usr/lib/python3/dist-packages/scitbx/examples/principal_axes_of_inertia.py" 150s libtbx.python "/usr/lib/python3/dist-packages/scitbx/examples/lbfgs_recipe.py" 150s libtbx.python "/usr/lib/python3/dist-packages/scitbx/examples/lbfgs_linear_least_squares_fit.py" 150s libtbx.python "/usr/lib/python3/dist-packages/scitbx/examples/chebyshev_lsq_example.py" 150s libtbx.python "/usr/lib/python3/dist-packages/scitbx/examples/immoptibox_ports.py" 150s libtbx.python "/usr/lib/python3/dist-packages/scitbx/examples/rigid_body_refinement_core.py" 150s libtbx.python "/usr/lib/python3/dist-packages/scitbx/examples/integrating_a_weighted_sinc_function.py" 150s libtbx.python "/usr/lib/python3/dist-packages/scitbx/examples/minimizer_comparisons.py" 150s libtbx.python "/usr/lib/python3/dist-packages/scitbx/graph/tst_utils.py" 150s libtbx.python "/usr/lib/python3/dist-packages/scitbx/graph/rigidity.py" 150s libtbx.python "/usr/lib/python3/dist-packages/scitbx/graph/tst_rigidity.py" 150s libtbx.python "/usr/lib/python3/dist-packages/scitbx/graph/rigidity_matrix_symbolic.py" 150s libtbx.python "/usr/lib/python3/dist-packages/scitbx/graph/tst_tardy_tree_find_paths.py" 150s libtbx.python "/usr/lib/python3/dist-packages/scitbx/graph/tst_tardy_tree.py" 150s libtbx.python "/usr/lib/python3/dist-packages/scitbx/graph/test_cases_tardy_pdb.py" 150s libtbx.python "/usr/lib/python3/dist-packages/scitbx/rigid_body/essence/tst_basic.py" 150s libtbx.python "/usr/lib/python3/dist-packages/scitbx/rigid_body/essence/tst_tardy.py" 150s libtbx.python "/usr/lib/python3/dist-packages/scitbx/rigid_body/essence/tst_energy_plots.py" 150s libtbx.python "/usr/lib/python3/dist-packages/scitbx/rigid_body/tst.py" 150s libtbx.python "/usr/lib/python3/dist-packages/scitbx/rigid_body/proto/free_motion_reference_impl.py" 150s libtbx.python "/usr/lib/python3/dist-packages/scitbx/rigid_body/proto/tst_featherstone.py" 150s libtbx.python "/usr/lib/python3/dist-packages/scitbx/rigid_body/proto/tst_free_motion.py" 150s libtbx.python "/usr/lib/python3/dist-packages/scitbx/rigid_body/proto/tst_free_motion_hard.py" 150s libtbx.python "/usr/lib/python3/dist-packages/scitbx/rigid_body/proto/tst_joint_lib.py" 150s libtbx.python "/usr/lib/python3/dist-packages/scitbx/rigid_body/proto/tst_singular.py" 150s libtbx.python "/usr/lib/python3/dist-packages/scitbx/rigid_body/proto/tst_spherical_refinement.py" 150s libtbx.python "/usr/lib/python3/dist-packages/scitbx/rigid_body/proto/tst_molecules.py" 150s libtbx.python "/usr/lib/python3/dist-packages/scitbx/sparse/tests/tst_sparse.py" 150s libtbx.python "/usr/lib/python3/dist-packages/scitbx/sparse/tests/tst_lu_factorization.py" 150s libtbx.python "/usr/lib/python3/dist-packages/scitbx/iso_surface/tst_iso_surface.py" 150s libtbx.python "/usr/lib/python3/dist-packages/scitbx/tests/simplex.py" 150s libtbx.python "/usr/lib/python3/dist-packages/scitbx/tests/differential_evolution.py" 150s libtbx.python "/usr/lib/python3/dist-packages/scitbx/tests/golden_section_search.py" 150s libtbx.python "/usr/lib/python3/dist-packages/scitbx/tests/direct_search_simulated_annealing.py" 150s libtbx.python "/usr/lib/python3/dist-packages/scitbx/random/tests/tst_random.py" 150s libtbx.python "/usr/lib/python3/dist-packages/scitbx/lstbx/tests/tst_normal_equations.py" 150s libtbx.python "/usr/lib/python3/dist-packages/scitbx/lstbx/tests/test_problems.py" 150s libtbx.python "/usr/lib/python3/dist-packages/scitbx/glmtbx/tests/tst.py" 150s libtbx.python "/usr/lib/python3/dist-packages/scitbx/dtmin/regression/tst_dtmin_basic.py" 150s libtbx.python "/usr/lib/python3/dist-packages/scitbx/dtmin/regression/tst_dtmin_booth.py" 150s libtbx.python "/usr/lib/python3/dist-packages/scitbx/dtmin/regression/tst_dtmin_twisted.py" 150s libtbx.python "/usr/lib/python3/dist-packages/scitbx/suffixtree/test/tst_single.py" 150s libtbx.python "/usr/lib/python3/dist-packages/smtbx/absolute_structure/tests/tst_absolute_structure.py" --fix_random_seeds 150s libtbx.python "/usr/lib/python3/dist-packages/smtbx/ab_initio/tests/tst_ab_initio_ext.py" 150s libtbx.python "/usr/lib/python3/dist-packages/smtbx/ab_initio/tests/tst_charge_flipping.py" --fix_seed --on=E "hall: P 1" "hall: P 3" "hall: -P 2ybc" 150s libtbx.python "/usr/lib/python3/dist-packages/smtbx/masks/tests/tst_masks.py" 150s libtbx.python "/usr/lib/python3/dist-packages/smtbx/structure_factors/direct/tests/tst_standard_xray.py" 150s libtbx.python "/usr/lib/python3/dist-packages/smtbx/refinement/tests/tst_weighting_schemes.py" --fix_random_seeds 150s libtbx.python "/usr/lib/python3/dist-packages/smtbx/refinement/constraints/tests/tst_lbfgs.py" 150s "/usr/lib/cctbx/python3.13/smtbx/refinement/constraints/tests/tst_reparametrisation" 150s libtbx.python "/usr/lib/python3/dist-packages/smtbx/refinement/constraints/tests/tst_occupancies.py" 150s "/usr/lib/cctbx/python3.13/smtbx/refinement/constraints/tests/tst_geometrical_hydrogens" 150s libtbx.python "/usr/lib/python3/dist-packages/smtbx/refinement/constraints/tests/tst_same_group.py" 150s "/usr/lib/cctbx/python3.13/smtbx/refinement/constraints/tests/tst_special_position" 150s libtbx.python "/usr/lib/python3/dist-packages/smtbx/refinement/constraints/tests/tst_reparametrisation.py" 150s libtbx.python "/usr/lib/python3/dist-packages/smtbx/refinement/constraints/tests/tst_constrained_structure.py" --normal_eqns_solving_method=naive 150s libtbx.python "/usr/lib/python3/dist-packages/smtbx/refinement/constraints/tests/tst_disorder.py" 150s libtbx.python "/usr/lib/python3/dist-packages/smtbx/refinement/constraints/tests/tst_constrained_structure.py" --normal_eqns_solving_method=levenberg-marquardt 150s libtbx.python "/usr/lib/python3/dist-packages/smtbx/refinement/constraints/tests/tst_rigid.py" 150s libtbx.python "/usr/lib/python3/dist-packages/smtbx/refinement/constraints/tests/tst_direction.py" 150s libtbx.python "/usr/lib/python3/dist-packages/smtbx/refinement/restraints/tests/tst_adp_restraints.py" 150s libtbx.python "/usr/lib/python3/dist-packages/smtbx/refinement/restraints/tests/tst_manager.py" 150s libtbx.python "/usr/lib/python3/dist-packages/smtbx/refinement/restraints/tests/tst_restraints.py" --verbose --scatterers=5 --resolution=0.2 150s libtbx.python "/usr/lib/python3/dist-packages/smtbx/regression/tst_commandline_refine.py" 150s libtbx.python "/usr/lib/python3/dist-packages/smtbx/regression/tst_commandline_anomrefine.py" 150s libtbx.python "/usr/lib/python3/dist-packages/smtbx/tests/tst_utils.py" 150s libtbx.python "/usr/lib/python3/dist-packages/smtbx/refinement/tests/tst_least_squares.py" 150s libtbx.python "/usr/lib/python3/dist-packages/rstbx/dps_core/tst_iotbx_converter.py" 150s libtbx.python "/usr/lib/python3/dist-packages/rstbx/diffraction/tst_predict.py" 150s libtbx.python "/usr/lib/python3/dist-packages/rstbx/diffraction/tst_ewald_sphere.py" 150s libtbx.python "/usr/lib/python3/dist-packages/rstbx/diffraction/tst_partial_derivatives.py" 150s libtbx.python "/usr/lib/python3/dist-packages/rstbx/diffraction/fastbragg/tst_bragg_minimal.py" 150s libtbx.python "/usr/lib/python3/dist-packages/rstbx/sublattice_support/tst_sublattice.py" 150s libtbx.python -c "from rstbx.run_tests import run; run()" 150s libtbx.python "/usr/lib/python3/dist-packages/spotfinder/core_toolbox/boost_python/tst_small_image.py" 150s libtbx.python "/usr/lib/python3/dist-packages/spotfinder/diffraction/geometry.py" 150s libtbx.python "/usr/lib/python3/dist-packages/spotfinder/math_support/sphere_formulae.py" 150s 150s libtbx.python "/usr/lib/python3/dist-packages/annlib_adaptbx/annlib_adaptbx/self_match.py" [OK] 0.1s 150s Time: 0.12 150s Return code: 0 150s OKs: 1 150s Standard out: 150s OK 150s "/usr/lib/cctbx/python3.13/boost_adaptbx/tests/tst_optional_copy" [OK] 0.0s 150s Time: 0.01 150s Return code: 0 150s OKs: 1 150s Standard out: 150s OK 150s Standard error: 150s show_stack(1): /usr/lib/python3/dist-packages/boost_adaptbx/tests/tst_libc_backtrace.py(9) run 150s show_stack(2): /usr/lib/python3/dist-packages/boost_adaptbx/tests/tst_libc_backtrace.py(15) 150s libc backtrace (21 frames, most recent call last): 150s /usr/bin/python3.13() [0x11f913a] 150s /lib/s390x-linux-gnu/libc.so.6(__libc_start_main+0xb4) [0x3ffa142be44] 150s /lib/s390x-linux-gnu/libc.so.6(+0x2bd46) [0x3ffa142bd46] 150s /usr/bin/python3.13(Py_BytesMain+0x38) [0x11fa7a8] 150s /usr/bin/python3.13(Py_RunMain+0x316) [0x12617f6] 150s /usr/bin/python3.13() [0x126407c] 150s /usr/bin/python3.13() [0x1264326] 150s /usr/bin/python3.13() [0x1265018] 150s /usr/bin/python3.13() [0x123b5ac] 150s /usr/bin/python3.13() [0x1242652] 150s /usr/bin/python3.13(PyEval_EvalCode+0x100) [0x12131d0] 150s /usr/bin/python3.13(_PyEval_EvalFrameDefault+0x37c2) [0x10dd4e2] 150s /usr/bin/python3.13(PyObject_Vectorcall+0x9a) [0x10bd7fa] 150s /usr/bin/python3.13(_PyObject_MakeTpCall+0x2ac) [0x10b6dfc] 150s /lib/s390x-linux-gnu/libboost_python313.so.1.83.0(+0x238f6) [0x3ffa0aa38f6] 150s /lib/s390x-linux-gnu/libboost_python313.so.1.83.0(boost::python::handle_exception_impl(boost::function0)+0x88) [0x3ffa0aa3648] 150s /lib/s390x-linux-gnu/libboost_python313.so.1.83.0(+0x26e7a) [0x3ffa0aa6e7a] 150s /lib/s390x-linux-gnu/libboost_python313.so.1.83.0(boost::python::objects::function::call(_object*, _object*) const+0x80) [0x3ffa0aa69b0] 150s /usr/lib/python3/dist-packages/boost_python_meta_ext.cpython-313-s390x-linux-gnu.so(+0x1a406) [0x3ffa0b9a406] 150s /usr/lib/python3/dist-packages/boost_python_meta_ext.cpython-313-s390x-linux-gnu.so(+0x24d2c) [0x3ffa0ba4d2c] 150s /usr/lib/python3/dist-packages/boost_python_meta_ext.cpython-313-s390x-linux-gnu.so(+0x2467e) [0x3ffa0ba467e] 150s libtbx.python "/usr/lib/python3/dist-packages/boost_adaptbx/tests/tst_libc_backtrace.py" [OK] 0.0s 150s Time: 0.04 150s Return code: 0 150s OKs: 1 150s Standard out: 150s OK 150s libtbx.python "/usr/lib/python3/dist-packages/boost_adaptbx/tests/tst_rational.py" [OK] 0.1s 150s Time: 0.07 150s Return code: 0 150s OKs: 1 150s Standard out: 150s OK 150s libtbx.python "/usr/lib/python3/dist-packages/boost_adaptbx/tests/tst_optional.py" [OK] 0.1s 150s Time: 0.06 150s Return code: 0 150s OKs: 1 150s Standard out: 150s exercise_wstring: 150s OK 150s libtbx.python "/usr/lib/python3/dist-packages/annlib_adaptbx/annlib_adaptbx/sample.py" [OK] 0.4s 150s Time: 0.35 150s Return code: 0 150s OKs: 1 150s Standard out: 150s OK 150s libtbx.python "/usr/lib/python3/dist-packages/boost_adaptbx/tests/tst_std_pair.py" [OK] 0.1s 150s Time: 0.06 150s Return code: 0 150s OKs: 1 150s Standard out: 150s OK 150s libtbx.python "/usr/lib/python3/dist-packages/boost_adaptbx/tests/tst_tuple.py" [OK] 0.0s 150s Time: 0.03 150s Return code: 0 150s OKs: 1 150s Standard out: 150s OK 150s libtbx.python "/usr/lib/python3/dist-packages/boost_adaptbx/tests/tst_stderr_stdout.py" [OK] 0.0s 150s Time: 0.04 150s Return code: 0 150s OKs: 1 150s Standard out: 150s OK 150s libtbx.python "/usr/lib/python3/dist-packages/boost_adaptbx/tests/tst_stdout.py" [OK] 0.1s 150s Time: 0.07 150s Return code: 0 150s OKs: 1 150s Standard out: 150s OK 150s libtbx.python "/usr/lib/python3/dist-packages/boost_adaptbx/tests/tst_deprecation_tools.py" [OK] 0.0s 150s Time: 0.04 150s Return code: 0 150s OKs: 1 150s Standard out: 150s OK 152s Standard error: 152s Traceback (most recent call last): 152s File "/usr/lib/python3/dist-packages/boost_adaptbx/tests/tst_python_streambuf.py", line 7, in 152s import StringIO 152s ModuleNotFoundError: No module named 'StringIO' 152s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 152s 1 152s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 152s libtbx.python "/usr/lib/python3/dist-packages/boost_adaptbx/tests/tst_python_streambuf.py" [EXPECTED FAIL] 1.5s 152s Time: 1.46 152s Return code: 1 152s OKs: 0 153s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 153s 139 153s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 153s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_sf_low_res_accuracy.py" [FAIL] 2.7s 153s Time: 2.67 153s Return code: 139 153s OKs: 0 153s Standard error: 153s Segmentation fault (core dumped) 155s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 155s 139 155s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 155s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_miller_double_step_filtration.py" [FAIL] 3.7s 155s Time: 3.69 155s Return code: 139 155s OKs: 0 155s Standard error: 155s Segmentation fault (core dumped) 158s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 158s 139 158s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 158s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_map_is_periodic.py" [FAIL] 4.8s 158s Time: 4.79 158s Return code: 139 158s OKs: 0 158s Standard error: 158s Segmentation fault (core dumped) 158s libtbx.python "/usr/lib/python3/dist-packages/cctbx/miller/tst_map_to_asu_isym.py" [OK] 0.3s 158s Time: 0.28 158s Return code: 0 158s OKs: 1 158s Standard out: 158s OK 160s Standard error: 160s Segmentation fault (core dumped) 160s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 160s 139 160s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 160s libtbx.python "/usr/lib/python3/dist-packages/cctbx/miller/tst_reindexing.py" [FAIL] 4.7s 160s Time: 4.66 160s Return code: 139 160s OKs: 0 162s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 162s 139 162s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 162s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_miller_data_manipulation.py" [FAIL] 4.4s 162s Time: 4.37 162s Return code: 139 162s OKs: 0 162s Standard error: 162s Segmentation fault (core dumped) 165s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 165s 139 165s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 165s libtbx.python "/usr/lib/python3/dist-packages/cctbx/omz/tst_bfgs.py" [FAIL] 4.4s 165s Time: 4.39 165s Return code: 139 165s OKs: 0 165s Standard error: 165s Segmentation fault (core dumped) 167s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 167s 139 167s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 167s libtbx.python "/usr/lib/python3/dist-packages/cctbx/omz/tst_dev.py" P31 [FAIL] 4.4s 167s Time: 4.44 167s Return code: 139 167s OKs: 0 167s Standard error: 167s Segmentation fault (core dumped) 169s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 169s 139 169s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 169s libtbx.python "/usr/lib/python3/dist-packages/cctbx/geometry/tests/tst_geometry.py" [FAIL] 4.7s 169s Time: 4.75 169s Return code: 139 169s OKs: 0 169s Standard error: 169s Segmentation fault (core dumped) 171s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 171s 139 171s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 171s libtbx.python "/usr/lib/python3/dist-packages/cctbx/covariance/tests/tst_covariance.py" [FAIL] 4.7s 171s Time: 4.71 171s Return code: 139 171s OKs: 0 171s Standard error: 171s Segmentation fault (core dumped) 174s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 174s 139 174s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 174s libtbx.python "/usr/lib/python3/dist-packages/cctbx/symmetry_search/tests/tst_goodness_of_symmetry.py" [FAIL] 4.7s 174s Time: 4.67 174s Return code: 139 174s OKs: 0 174s Standard error: 174s Segmentation fault (core dumped) 174s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_adp_aniso_restraints.py" [OK] 0.2s 174s Time: 0.16 174s Return code: 0 174s OKs: 1 174s Standard out: 174s Skipping exercise(): chem_data directory not available 174s OK 174s libtbx.python "/usr/lib/python3/dist-packages/cctbx/math/boost_python/tst_math.py" [OK] 0.1s 174s Time: 0.07 174s Return code: 0 174s OKs: 1 174s Standard out: 174s OK 175s libtbx.python "/usr/lib/python3/dist-packages/cctbx/xray/boost_python/tst_targets_fd.py" [OK] 0.3s 175s Time: 0.28 175s Return code: 0 175s OKs: 1 175s Standard out: 175s OK 176s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 176s 139 176s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 176s libtbx.python "/usr/lib/python3/dist-packages/cctbx/symmetry_search/tests/tst_from_map.py" P312 [FAIL] 4.7s 176s Time: 4.69 176s Return code: 139 176s OKs: 0 176s Standard error: 176s Segmentation fault (core dumped) 179s Standard error: 179s Segmentation fault (core dumped) 179s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 179s 139 179s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 179s libtbx.python "/usr/lib/python3/dist-packages/cctbx/xray/boost_python/tst_xray.py" [FAIL] 4.5s 179s Time: 4.46 179s Return code: 139 179s OKs: 0 181s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 181s 139 181s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 181s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_xray.py" I41/acd [FAIL] 5.2s 181s Time: 5.19 181s Return code: 139 181s OKs: 0 181s Standard error: 181s Segmentation fault (core dumped) 184s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 184s 139 184s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 184s libtbx.python "/usr/lib/python3/dist-packages/cctbx/xray/targets/tst_r1.py" [FAIL] 4.9s 184s Time: 4.93 184s Return code: 139 184s OKs: 0 184s Standard error: 184s Segmentation fault (core dumped) 186s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 186s 139 186s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 186s libtbx.python "/usr/lib/python3/dist-packages/cctbx/xray/targets/tst_shelxl_wght_ls.py" [FAIL] 4.7s 186s Time: 4.71 186s Return code: 139 186s OKs: 0 186s Standard error: 186s Segmentation fault (core dumped) 188s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 188s 139 188s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 188s libtbx.python "/usr/lib/python3/dist-packages/cctbx/xray/boost_python/tst_f_model.py" [FAIL] 4.7s 188s Time: 4.73 188s Return code: 139 188s OKs: 0 188s Standard error: 188s Segmentation fault (core dumped) 191s Standard error: 191s Segmentation fault (core dumped) 191s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 191s 139 191s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 191s libtbx.python "/usr/lib/python3/dist-packages/cctbx/array_family/boost_python/tst_flex.py" [FAIL] 4.8s 191s Time: 4.83 191s Return code: 139 191s OKs: 0 193s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 193s 139 193s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 193s libtbx.python "/usr/lib/python3/dist-packages/cctbx/uctbx/boost_python/tst_uctbx.py" [FAIL] 4.7s 193s Time: 4.73 193s Return code: 139 193s OKs: 0 193s Standard error: 193s Segmentation fault (core dumped) 196s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 196s 139 196s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 196s libtbx.python "/usr/lib/python3/dist-packages/cctbx/uctbx/boost_python/tst_crystal_orientation.py" [FAIL] 4.4s 196s Time: 4.44 196s Return code: 139 196s OKs: 0 196s Standard error: 196s Segmentation fault (core dumped) 196s libtbx.python "/usr/lib/python3/dist-packages/cctbx/sgtbx/boost_python/tst_N_fold_rot.py" [OK] 0.1s 196s Time: 0.14 196s Return code: 0 196s OKs: 1 196s Standard out: 196s OK 198s Standard error: 198s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 198s 139 198s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 198s libtbx.python "/usr/lib/python3/dist-packages/cctbx/sgtbx/boost_python/tst_sgtbx.py" [FAIL] 4.7s 198s Time: 4.74 198s Return code: 139 198s OKs: 0 198s Segmentation fault (core dumped) 200s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 200s 139 200s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 200s libtbx.python "/usr/lib/python3/dist-packages/cctbx/crystal/tst_ext.py" [FAIL] 5.0s 200s Standard error: 200s Segmentation fault (core dumped) 200s Time: 5.01 200s Return code: 139 200s OKs: 0 203s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 203s 139 203s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 203s libtbx.python "/usr/lib/python3/dist-packages/cctbx/crystal/tst_distance_based_connectivity.py" [FAIL] 4.8s 203s Time: 4.76 203s Return code: 139 203s OKs: 0 203s Standard error: 203s Segmentation fault (core dumped) 206s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 206s 139 206s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 206s libtbx.python "/usr/lib/python3/dist-packages/cctbx/crystal/tst_super_cell.py" [FAIL] 5.7s 206s Time: 5.69 206s Return code: 139 206s OKs: 0 206s Standard error: 206s Segmentation fault (core dumped) 209s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 209s 139 209s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 209s libtbx.python "/usr/lib/python3/dist-packages/cctbx/adptbx/boost_python/tst_adptbx.py" [FAIL] 6.0s 209s Time: 6.03 209s Return code: 139 209s OKs: 0 209s Standard error: 209s Segmentation fault (core dumped) 209s libtbx.python "/usr/lib/python3/dist-packages/cctbx/eltbx/tests/tst_chemical_elements.py" [OK] 0.1s 209s Time: 0.06 209s Return code: 0 209s OKs: 1 209s Standard out: 209s OK 211s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 211s 139 211s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 211s libtbx.python "/usr/lib/python3/dist-packages/cctbx/miller/boost_python/tst_miller.py" [FAIL] 5.0s 211s Time: 5.01 211s Return code: 139 211s OKs: 0 211s Standard error: 211s Segmentation fault (core dumped) 211s libtbx.python "/usr/lib/python3/dist-packages/cctbx/eltbx/tests/tst_henke.py" [OK] 0.1s 211s Time: 0.06 211s Return code: 0 211s OKs: 1 211s Standard out: 211s OK 211s libtbx.python "/usr/lib/python3/dist-packages/cctbx/eltbx/tests/tst_icsd_radii.py" [OK] 0.1s 211s Time: 0.06 211s Return code: 0 211s OKs: 1 211s Standard out: 211s OK 211s libtbx.python "/usr/lib/python3/dist-packages/cctbx/eltbx/tests/tst_covalent_radii.py" [OK] 0.1s 211s Time: 0.06 211s Return code: 0 211s OKs: 1 211s Standard out: 211s OK 211s libtbx.python "/usr/lib/python3/dist-packages/cctbx/eltbx/tests/tst_neutron.py" [OK] 0.1s 211s Time: 0.06 211s Return code: 0 211s OKs: 1 211s Standard out: 211s OK 211s libtbx.python "/usr/lib/python3/dist-packages/cctbx/eltbx/tests/tst_sasaki.py" [OK] 0.1s 211s Time: 0.06 211s Return code: 0 211s OKs: 1 211s Standard out: 211s OK 212s libtbx.python "/usr/lib/python3/dist-packages/cctbx/eltbx/tests/tst_tiny_pse.py" [OK] 0.1s 212s Time: 0.06 212s Return code: 0 212s OKs: 1 212s Standard out: 212s OK 212s libtbx.python "/usr/lib/python3/dist-packages/cctbx/eltbx/tests/tst_wavelengths.py" [OK] 0.1s 212s Time: 0.06 212s Return code: 0 212s OKs: 1 212s Standard out: 212s OK 213s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 213s 139 213s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 213s libtbx.python "/usr/lib/python3/dist-packages/cctbx/eltbx/tests/tst_xray_scattering.py" [FAIL] 4.6s 213s Time: 4.64 213s Return code: 139 213s OKs: 0 213s Standard error: 213s Segmentation fault (core dumped) 216s Standard error: 216s Segmentation fault (core dumped) 216s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 216s 139 216s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 216s libtbx.python "/usr/lib/python3/dist-packages/cctbx/eltbx/tests/tst_formula.py" [FAIL] 3.9s 216s Time: 3.91 216s Return code: 139 216s OKs: 0 218s Standard error: 218s Segmentation fault (core dumped) 218s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 218s 139 218s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 218s libtbx.python "/usr/lib/python3/dist-packages/cctbx/eltbx/tests/tst_attenuation_coefficient.py" [FAIL] 4.2s 218s Time: 4.19 218s Return code: 139 218s OKs: 0 220s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 220s 139 220s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 220s libtbx.python "/usr/lib/python3/dist-packages/cctbx/maptbx/boost_python/tst_maptbx.py" [FAIL] 4.5s 220s Time: 4.54 220s Return code: 139 220s OKs: 0 220s Standard error: 220s Segmentation fault (core dumped) 223s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 223s 139 223s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 223s libtbx.python "/usr/lib/python3/dist-packages/cctbx/maptbx/tst_bcr.py" [FAIL] 5.7s 223s Time: 5.68 223s Return code: 139 223s OKs: 0 223s Standard error: 223s Segmentation fault (core dumped) 226s Standard error: 226s Segmentation fault (core dumped) 226s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 226s 139 226s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 226s libtbx.python "/usr/lib/python3/dist-packages/cctbx/maptbx/tst_loft.py" [FAIL] 5.7s 226s Time: 5.69 226s Return code: 139 226s OKs: 0 228s Standard error: 228s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 228s 139 228s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 228s libtbx.python "/usr/lib/python3/dist-packages/cctbx/dmtbx/boost_python/tst_dmtbx.py" [FAIL] 4.6s 228s Time: 4.61 228s Return code: 139 228s OKs: 0 228s Segmentation fault (core dumped) 230s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 230s 139 230s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 230s libtbx.python "/usr/lib/python3/dist-packages/cctbx/translation_search/boost_python/tst_translation_search.py" [FAIL] 4.4s 230s Time: 4.37 230s Return code: 139 230s OKs: 0 230s Standard error: 230s Segmentation fault (core dumped) 230s libtbx.python "/usr/lib/python3/dist-packages/cctbx/geometry_restraints/tst_proxy_registry.py" [OK] 0.2s 230s Time: 0.15 230s Return code: 0 230s OKs: 1 230s Standard out: 230s OK 231s libtbx.python "/usr/lib/python3/dist-packages/cctbx/geometry_restraints/tst_nonbonded_overlaps.py" [OK] 0.5s 231s Time: 0.48 231s Return code: 0 231s OKs: 0 231s Standard out: 231s chem_data not present, skipping 231s libtbx.python "/usr/lib/python3/dist-packages/cctbx/geometry_restraints/tst_process_nonbonded_proxies.py" [OK] 0.5s 231s Time: 0.49 231s Return code: 0 231s OKs: 0 231s Standard out: 231s Test skipped, need monomer library 233s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 233s 139 233s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 233s libtbx.python "/usr/lib/python3/dist-packages/cctbx/geometry_restraints/tst_ext.py" [FAIL] 4.9s 233s Standard error: 233s Segmentation fault (core dumped) 233s Time: 4.87 233s Return code: 139 233s OKs: 0 233s libtbx.python "/usr/lib/python3/dist-packages/cctbx/geometry_restraints/tst_motif.py" [OK] 0.2s 233s Time: 0.16 233s Return code: 0 233s OKs: 0 233s Standard out: 233s u+s,u,s: 0.13 0.12 0.01 235s Standard error: 235s Segmentation fault (core dumped) 235s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 235s 139 235s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 235s libtbx.python "/usr/lib/python3/dist-packages/cctbx/geometry_restraints/tst_angle_derivs.py" [FAIL] 3.8s 235s Time: 3.78 235s Return code: 139 235s OKs: 0 235s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_math_module.py" [OK] 0.1s 235s Time: 0.06 235s Return code: 0 235s OKs: 1 235s Standard out: 235s OK 238s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 238s 139 238s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 238s libtbx.python "/usr/lib/python3/dist-packages/cctbx/adp_restraints/tst_ext.py" [FAIL] 4.6s 238s Time: 4.59 238s Return code: 139 238s OKs: 0 238s Standard error: 238s Segmentation fault (core dumped) 240s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 240s 139 240s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 240s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_krivy_gruber.py" --Quick [FAIL] 4.7s 240s Time: 4.67 240s Return code: 139 240s OKs: 0 240s Standard error: 240s Segmentation fault (core dumped) 240s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_itvb_2001_table_a1427_hall_symbols.py" [OK] 0.1s 240s Time: 0.13 240s Return code: 0 240s OKs: 1 240s Standard out: 240s Skipping exercise(): input file not available 240s OK 242s Standard error: 242s Segmentation fault (core dumped) 242s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 242s 139 242s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 242s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_sgtbx.py" [FAIL] 4.5s 242s Time: 4.47 242s Return code: 139 242s OKs: 0 244s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 244s 139 244s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 244s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_space_group_type_tidy_cb_op_t.py" [FAIL] 4.3s 244s Time: 4.26 244s Return code: 139 244s OKs: 0 244s Standard error: 244s Segmentation fault (core dumped) 246s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 246s 139 246s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 246s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_sgtbx_denominators.py" P31 [FAIL] 4.2s 246s Time: 4.23 246s Return code: 139 246s OKs: 0 246s Standard error: 246s Segmentation fault (core dumped) 248s Standard error: 248s Segmentation fault (core dumped) 248s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 248s 139 248s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 248s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_sgtbx_subgroups.py" [FAIL] 4.2s 248s Time: 4.20 248s Return code: 139 248s OKs: 0 250s Standard error: 250s Segmentation fault (core dumped) 250s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 250s 139 250s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 250s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_sgtbx_lattice_symmetry.py" [FAIL] 4.2s 250s Time: 4.24 250s Return code: 139 250s OKs: 0 253s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 253s 139 253s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 253s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_adp_constraints.py" P3 [FAIL] 4.4s 253s Standard error: 253s Segmentation fault (core dumped) 253s Time: 4.44 253s Return code: 139 253s OKs: 0 253s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_sgtbx_site_constraints.py" [OK] 0.3s 253s Time: 0.25 253s Return code: 0 253s OKs: 0 253s Standard out: 253s Skipping process_zeolite_atlas(): input file not available 253s u+s,u,s: 0.21 0.20 0.01 255s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 255s 139 255s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 255s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_adp_constraints_cartesian.py" [FAIL] 4.5s 255s Time: 4.48 255s Return code: 139 255s OKs: 0 255s Standard error: 255s Segmentation fault (core dumped) 257s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 257s 139 257s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 257s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_reflection_statistics.py" [FAIL] 4.3s 257s Standard error: 257s Segmentation fault (core dumped) 257s Time: 4.29 257s Return code: 139 257s OKs: 0 260s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 260s 139 260s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 260s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_sgtbx_harker.py" [FAIL] 4.6s 260s Time: 4.60 260s Return code: 139 260s OKs: 0 260s Standard error: 260s Segmentation fault (core dumped) 262s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 262s 139 262s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 262s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_sgtbx_special_op_simplifier.py" [FAIL] 4.6s 262s Time: 4.59 262s Return code: 139 262s OKs: 0 262s Standard error: 262s Segmentation fault (core dumped) 264s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 264s 139 264s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 264s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_twin_target.py" [FAIL] 4.8s 264s Time: 4.77 264s Return code: 139 264s OKs: 0 264s Standard error: 264s Segmentation fault (core dumped) 266s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 266s 139 266s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 266s libtbx.python "/usr/lib/python3/dist-packages/cctbx/sgtbx/symbol_confidence.py" [FAIL] 4.5s 266s Time: 4.51 266s Return code: 139 266s OKs: 0 266s Standard error: 266s Segmentation fault (core dumped) 269s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 269s 139 269s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 269s libtbx.python "/usr/lib/python3/dist-packages/cctbx/sgtbx/bravais_types.py" [FAIL] 4.2s 269s Time: 4.22 269s Return code: 139 269s OKs: 0 269s Standard error: 269s Segmentation fault (core dumped) 272s Standard error: 272s Segmentation fault (core dumped) 272s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 272s 139 272s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 272s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_miller_lookup_utils.py" [FAIL] 4.5s 272s Time: 4.45 272s Return code: 139 272s OKs: 0 273s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 273s 139 273s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 273s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_crystal.py" I41/acd [FAIL] 4.7s 273s Time: 4.74 273s Return code: 139 273s OKs: 0 273s Standard error: 273s Segmentation fault (core dumped) 276s Standard error: 276s Segmentation fault (core dumped) 276s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 276s 139 276s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 276s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_direct_space_asu.py" I41/acd [FAIL] 4.8s 276s Time: 4.79 276s Return code: 139 276s OKs: 0 278s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 278s 139 278s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 278s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_pair_asu_table.py" [FAIL] 4.8s 278s Time: 4.85 278s Return code: 139 278s OKs: 0 278s Standard error: 278s Segmentation fault (core dumped) 278s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_coordination_sequences.py" [OK] 0.2s 278s Time: 0.25 278s Return code: 0 278s OKs: 1 278s Standard out: 278s Skipping exercise(): input file not available 278s OK 280s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 280s 139 280s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 280s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_crystal_asu_clusters.py" [FAIL] 4.6s 280s Time: 4.62 280s Return code: 139 280s OKs: 0 280s Standard error: 280s Segmentation fault (core dumped) 283s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 283s 139 283s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 283s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_crystal_close_packing.py" R-3mr [FAIL] 4.4s 283s Time: 4.42 283s Return code: 139 283s OKs: 0 283s Standard error: 283s Segmentation fault (core dumped) 285s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 285s 139 285s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 285s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_fourier_transform_real_part_at_x.py" P31 [FAIL] 4.6s 285s Time: 4.61 285s Return code: 139 285s OKs: 0 285s Standard error: 285s Segmentation fault (core dumped) 288s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 288s 139 288s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 288s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_miller.py" P31 [FAIL] 4.9s 288s Time: 4.87 288s Return code: 139 288s OKs: 0 288s Standard error: 288s Segmentation fault (core dumped) 288s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_mem_2.py" [OK] 0.2s 288s Time: 0.19 288s Return code: 0 288s OKs: 0 288s Standard out: 288s Skipping test: phenix not available 290s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 290s 139 290s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 290s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_mem.py" [FAIL] 5.2s 290s Time: 5.19 290s Return code: 139 290s OKs: 0 290s Standard error: 290s Segmentation fault (core dumped) 292s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 292s 139 292s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 292s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_reciprocal_space_asu.py" P312 [FAIL] 4.5s 292s Time: 4.53 292s Return code: 139 292s OKs: 0 292s Standard error: 292s Segmentation fault (core dumped) 295s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 295s 139 295s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 295s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_triplet_generator.py" P41 [FAIL] 4.7s 295s Time: 4.65 295s Return code: 139 295s OKs: 0 295s Standard error: 295s Segmentation fault (core dumped) 297s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 297s 139 297s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 297s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_emma.py" P31 [FAIL] 5.1s 297s Time: 5.06 297s Return code: 139 297s OKs: 0 297s Standard error: 297s Segmentation fault (core dumped) 300s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 300s 139 300s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 300s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_expand_to_p1.py" P31 [FAIL] 5.0s 300s Time: 5.04 300s Return code: 139 300s OKs: 0 300s Standard error: 300s Segmentation fault (core dumped) 302s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 302s 139 302s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 302s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_change_basis.py" P31 [FAIL] 4.7s 302s Time: 4.72 302s Return code: 139 302s OKs: 0 302s Standard error: 302s Segmentation fault (core dumped) 305s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 305s 139 305s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 305s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_wilson_plot.py" P31 [FAIL] 4.7s 305s Time: 4.73 305s Return code: 139 305s OKs: 0 305s Standard error: 305s Segmentation fault (core dumped) 307s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 307s 139 307s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 307s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_xray_derivatives.py" P31 [FAIL] 4.7s 307s Time: 4.71 307s Return code: 139 307s OKs: 0 307s Standard error: 307s Segmentation fault (core dumped) 309s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 309s 139 309s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 309s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_xray_fast_gradients.py" P31 [FAIL] 4.9s 309s Time: 4.85 309s Return code: 139 309s OKs: 0 309s Standard error: 309s Segmentation fault (core dumped) 312s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 312s 139 312s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 312s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_xray_minimization.py" --F P31 [FAIL] 4.8s 312s Time: 4.83 312s Return code: 139 312s OKs: 0 312s Standard error: 312s Segmentation fault (core dumped) 312s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 312s 139 312s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 312s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_xray_minimization.py" --F_sq P31 [FAIL] 2.4s 312s Time: 2.38 312s Return code: 139 312s OKs: 0 312s Standard error: 312s Segmentation fault (core dumped) 314s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 314s 139 314s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 314s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_map_weights_for_symmetry_summation.py" Pmmm [FAIL] 2.5s 314s Time: 2.51 314s Return code: 139 314s OKs: 0 314s Standard error: 314s Segmentation fault (core dumped) 317s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 317s 139 317s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 317s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_maptbx_structure_factors.py" P31 [FAIL] 4.9s 317s Time: 4.92 317s Return code: 139 317s OKs: 0 317s Standard error: 317s Segmentation fault (core dumped) 319s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 319s 139 319s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 319s libtbx.python "/usr/lib/python3/dist-packages/cctbx/maptbx/tst_real_space_refinement_simple.py" [FAIL] 4.9s 319s Time: 4.90 319s Return code: 139 319s OKs: 0 319s Standard error: 319s Segmentation fault (core dumped) 321s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 321s 139 321s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 321s libtbx.python "/usr/lib/python3/dist-packages/cctbx/maptbx/tst_interpolation.py" [FAIL] 4.8s 321s Time: 4.76 321s Return code: 139 321s OKs: 0 321s Standard error: 321s Segmentation fault (core dumped) 324s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 324s 139 324s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 324s libtbx.python "/usr/lib/python3/dist-packages/cctbx/maptbx/tst_interpolation_2.py" [FAIL] 4.6s 324s Time: 4.61 324s Return code: 139 324s OKs: 0 324s Standard error: 324s Segmentation fault (core dumped) 327s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 327s 139 327s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 327s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_loc_res.py" [FAIL] 5.7s 327s Time: 5.74 327s Return code: 139 327s OKs: 0 327s Standard error: 327s Segmentation fault (core dumped) 330s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 330s 139 330s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 330s libtbx.python "/usr/lib/python3/dist-packages/cctbx/maptbx/tst_target_and_gradients.py" [FAIL] 5.7s 330s Time: 5.75 330s Return code: 139 330s OKs: 0 330s Standard error: 330s Segmentation fault (core dumped) 332s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 332s 139 332s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 332s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_miller_merge_equivalents.py" P31 [FAIL] 4.7s 332s Time: 4.70 332s Return code: 139 332s OKs: 0 332s Standard error: 332s Segmentation fault (core dumped) 334s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 334s 139 334s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 334s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_grouped_data.py" P31 [FAIL] 4.7s 334s Time: 4.67 334s Return code: 139 334s OKs: 0 334s Standard error: 334s Segmentation fault (core dumped) 337s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 337s 139 337s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 337s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_miller_fft_map.py" P31 [FAIL] 4.7s 337s Time: 4.68 337s Return code: 139 337s OKs: 0 337s Standard error: 337s Segmentation fault (core dumped) 339s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 339s 139 339s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 339s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_sampled_model_density.py" P31 [FAIL] 4.7s 339s Time: 4.73 339s Return code: 139 339s OKs: 0 339s Standard error: 339s Segmentation fault (core dumped) 339s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_geometry_restraints.py" [OK] 0.5s 339s Time: 0.48 339s Return code: 0 339s OKs: 1 339s Standard out: 339s OK 341s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 341s 139 341s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 341s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_fast_nv1995.py" F222 [FAIL] 4.8s 341s Time: 4.75 341s Return code: 139 341s OKs: 0 341s Standard error: 341s Segmentation fault (core dumped) 344s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 344s 139 344s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 344s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_geometry_restraints_lbfgs.py" [FAIL] 4.5s 344s Time: 4.47 344s Return code: 139 344s OKs: 0 344s Standard error: 344s Segmentation fault (core dumped) 344s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_grm_pickling.py" [OK] 0.3s 344s Time: 0.29 344s Return code: 0 344s OKs: 0 344s Standard out: 344s Can not initialize monomer_library, skipping test. 347s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 347s 139 347s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 347s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_geometry_restraints_2.py" [FAIL] 5.5s 347s Time: 5.47 347s Return code: 139 347s OKs: 0 347s Standard error: 347s Segmentation fault (core dumped) 349s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 349s 139 349s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 349s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_french_wilson.py" [FAIL] 5.0s 349s Time: 4.97 349s Return code: 139 349s OKs: 0 349s Standard error: 349s Segmentation fault (core dumped) 349s libtbx.python "/usr/lib/python3/dist-packages/cctbx/development/tst_cns_epsilon.py" P31 [OK] 0.2s 349s Time: 0.18 349s Return code: 0 349s OKs: 0 349s Standard out: 349s Skipping tests: cns not available. 349s u+s,u,s: 0.14 0.13 0.01 350s libtbx.python "/usr/lib/python3/dist-packages/cctbx/development/tst_cns_hl.py" P31 [OK] 0.2s 350s Time: 0.16 350s Return code: 0 350s OKs: 0 350s Standard out: 350s Skipping tests: cns not available. 350s u+s,u,s: 0.13 0.12 0.01 350s libtbx.python "/usr/lib/python3/dist-packages/cctbx/development/run_shelx76.py" P31 [OK] 0.2s 350s Time: 0.16 350s Return code: 0 350s OKs: 0 350s Standard out: 350s shelx76 not available. 352s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 352s 139 352s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 352s libtbx.python "/usr/lib/python3/dist-packages/cctbx/development/make_cns_input.py" P31 [FAIL] 4.7s 352s Time: 4.73 352s Return code: 139 352s OKs: 0 352s Standard error: 352s Segmentation fault (core dumped) 354s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 354s 139 354s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 354s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_pointgroup_tools.py" [FAIL] 4.2s 354s Time: 4.18 354s Return code: 139 354s OKs: 0 354s Standard error: 354s Segmentation fault (core dumped) 356s Standard error: 356s Segmentation fault (core dumped) 356s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 356s 139 356s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 356s libtbx.python "/usr/lib/python3/dist-packages/cctbx/sgtbx/sub_lattice_tools.py" [FAIL] 4.6s 356s Time: 4.57 356s Return code: 139 356s OKs: 0 358s Standard error: 358s Segmentation fault (core dumped) 358s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 358s 139 358s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 358s libtbx.python "/usr/lib/python3/dist-packages/cctbx/sgtbx/rational_matrices_point_groups.py" [FAIL] 4.5s 358s Time: 4.50 358s Return code: 139 358s OKs: 0 361s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 361s 139 361s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 361s libtbx.python "/usr/lib/python3/dist-packages/cctbx/sgtbx/cosets.py" [FAIL] 4.5s 361s Time: 4.49 361s Return code: 139 361s OKs: 0 361s Standard error: 361s Segmentation fault (core dumped) 363s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 363s 139 363s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 363s libtbx.python "/usr/lib/python3/dist-packages/cctbx/sgtbx/reticular_pg_tools.py" [FAIL] 4.5s 363s Time: 4.50 363s Return code: 139 363s OKs: 0 363s Standard error: 363s Segmentation fault (core dumped) 365s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 365s 139 365s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 365s libtbx.python "/usr/lib/python3/dist-packages/cctbx/sgtbx/reticular_twin_laws.py" [FAIL] 4.5s 365s Time: 4.51 365s Return code: 139 365s OKs: 0 365s Standard error: 365s Segmentation fault (core dumped) 367s Standard error: 367s Segmentation fault (core dumped) 367s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 367s 139 367s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 367s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_find_best_cell.py" [FAIL] 4.4s 367s Time: 4.44 367s Return code: 139 367s OKs: 0 370s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 370s 139 370s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 370s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_amplitude_normalisation.py" [FAIL] 4.5s 370s Time: 4.47 370s Return code: 139 370s OKs: 0 370s Standard error: 370s Segmentation fault (core dumped) 372s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 372s 139 372s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 372s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_statistics_graphs.py" [FAIL] 4.7s 372s Time: 4.67 372s Return code: 139 372s OKs: 0 372s Standard error: 372s Segmentation fault (core dumped) 374s Standard error: 374s Segmentation fault (core dumped) 374s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 374s 139 374s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 374s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_web_change_basis.py" [FAIL] 4.5s 374s Time: 4.51 374s Return code: 139 374s OKs: 0 376s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 376s 139 376s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 376s libtbx.python "/usr/lib/python3/dist-packages/cctbx/sgtbx/direct_space_asu/proto/tst_asu.py" [FAIL] 4.4s 376s Time: 4.37 376s Return code: 139 376s OKs: 0 376s Standard error: 376s Segmentation fault (core dumped) 379s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 379s 139 379s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 379s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_sgtbx_tidy_pickling.py" [FAIL] 4.6s 379s Time: 4.57 379s Return code: 139 379s OKs: 0 379s Standard error: 379s Segmentation fault (core dumped) 381s Standard error: 381s Segmentation fault (core dumped) 381s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 381s 139 381s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 381s libtbx.python "/usr/lib/python3/dist-packages/cctbx/masks/tests/tst_flood_fill.py" [FAIL] 4.6s 381s Time: 4.58 381s Return code: 139 381s OKs: 0 381s libtbx.python "/usr/lib/python3/dist-packages/cctbx/xray/observations/tst_observations.py" [OK] 0.2s 381s Time: 0.18 381s Return code: 0 381s OKs: 1 381s Standard out: 381s OK 383s Standard error: 383s Segmentation fault (core dumped) 383s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 383s 139 383s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 383s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_r_free_utils.py" [FAIL] 4.6s 383s Time: 4.64 383s Return code: 139 383s OKs: 0 386s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 386s 139 386s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 386s libtbx.python "/usr/lib/python3/dist-packages/cctbx/maptbx/tst_ccp.py" [FAIL] 4.7s 386s Time: 4.69 386s Return code: 139 386s OKs: 0 386s Standard error: 386s Segmentation fault (core dumped) 388s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 388s 139 388s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 388s libtbx.python "/usr/lib/python3/dist-packages/cctbx/maptbx/tst_mask.py" [FAIL] 4.9s 388s Time: 4.93 388s Return code: 139 388s OKs: 0 388s Standard error: 388s Segmentation fault (core dumped) 391s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 391s 139 391s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 391s libtbx.python "/usr/lib/python3/dist-packages/cctbx/maptbx/tst_map_peak_3d_as_2d.py" [FAIL] 4.9s 391s Time: 4.91 391s Return code: 139 391s OKs: 0 391s Standard error: 391s Segmentation fault (core dumped) 393s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 393s 139 393s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 393s libtbx.python "/usr/lib/python3/dist-packages/cctbx/maptbx/tst_asymmetric_map.py" [FAIL] 4.8s 393s Time: 4.81 393s Return code: 139 393s OKs: 0 393s Standard error: 393s Segmentation fault (core dumped) 395s Standard error: 395s Segmentation fault (core dumped) 395s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 395s 139 395s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 395s libtbx.python "/usr/lib/python3/dist-packages/cctbx/maptbx/tst_peak_volume_estimate.py" [FAIL] 4.7s 395s Time: 4.71 395s Return code: 139 395s OKs: 0 398s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 398s 139 398s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 398s libtbx.python "/usr/lib/python3/dist-packages/cctbx/maptbx/tst_resolution_from_map_and_model.py" [FAIL] 4.8s 398s Time: 4.78 398s Return code: 139 398s OKs: 0 398s Standard error: 398s Segmentation fault (core dumped) 400s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 400s 139 400s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 400s libtbx.python "/usr/lib/python3/dist-packages/cctbx/maptbx/tst_atom_curves.py" [FAIL] 4.7s 400s Time: 4.74 400s Return code: 139 400s OKs: 0 400s Standard error: 400s Segmentation fault (core dumped) 403s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 403s 139 403s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 403s libtbx.python "/usr/lib/python3/dist-packages/cctbx/maptbx/tst_atom_radius_as_central_peak_width.py" [FAIL] 4.8s 403s Time: 4.82 403s Return code: 139 403s OKs: 0 403s Standard error: 403s Segmentation fault (core dumped) 403s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_maptbx_box.py" [OK] 0.5s 403s Time: 0.50 403s Return code: 0 403s OKs: 0 403s Standard out: 403s phenix is not available, skipping test 404s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_create_models_or_maps.py" [OK] 0.5s 404s Time: 0.48 404s Return code: 0 404s OKs: 1 404s Standard out: 404s Skipping exercise(): chem_data directory not available 404s OK 405s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 405s 139 405s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 405s libtbx.python "/usr/lib/python3/dist-packages/cctbx/maptbx/tst_get_percentile_cutoffs.py" [FAIL] 5.0s 405s Time: 4.96 405s Return code: 139 405s OKs: 0 405s Standard error: 405s Segmentation fault (core dumped) 408s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 408s 139 408s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 408s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_sphericity.py" [FAIL] 3.9s 408s Time: 3.92 408s Return code: 139 408s OKs: 0 408s Standard error: 408s Segmentation fault (core dumped) 408s libtbx.python "/usr/lib/python3/dist-packages/cctbx/merging/brehm_diederichs.py" [OK] 0.2s 408s Time: 0.17 408s Return code: 0 408s OKs: 1 408s Standard out: 408s OK 408s libtbx.python "/usr/lib/python3/dist-packages/cctbx/multipolar/regression/tst_multipolar.py" [OK] 0.1s 408s Time: 0.11 408s Return code: 0 408s OKs: 3 408s Standard out: 408s OK 408s 0 408s 1 408s 2 408s OK 408s Skipping exercise(): chem_data directory not available 408s OK 410s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 410s 139 410s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 410s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_miller_statistics.py" [FAIL] 4.8s 410s Time: 4.85 410s Return code: 139 410s OKs: 0 410s Standard error: 410s Segmentation fault (core dumped) 413s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 413s 139 413s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 413s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_connectivity.py" [FAIL] 4.6s 413s Time: 4.64 413s Return code: 139 413s OKs: 0 413s Standard error: 413s Segmentation fault (core dumped) 415s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 415s 139 415s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 415s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_connectivity_allsym.py" [FAIL] 4.9s 415s Time: 4.90 415s Return code: 139 415s OKs: 0 415s Standard error: 415s Segmentation fault (core dumped) 415s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_grm_modifications.py" [OK] 0.5s 415s Time: 0.53 415s Return code: 0 415s OKs: 1 415s Standard out: 415s Can not initialize monomer_library, skipping test. 415s OK 419s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 419s 1 419s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 419s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_diffuse.py" [FAIL] 6.1s 419s Time: 6.07 419s Return code: 1 419s OKs: 0 419s Standard error: 419s Segmentation fault (core dumped) 419s Traceback (most recent call last): 419s File "/usr/lib/python3/dist-packages/cctbx/regression/tst_diffuse.py", line 140, in 419s exercise() 419s ~~~~~~~~^^ 419s File "/usr/lib/python3/dist-packages/cctbx/regression/tst_diffuse.py", line 126, in exercise 419s assert not easy_run.call(cmd) 419s ^^^^^^^^^^^^^^^^^^^^^^ 419s AssertionError 420s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_wavelength_units.py" [OK] 1.4s 420s Time: 1.43 420s Return code: 0 420s OKs: 1 420s Standard out: 420s OK 421s Standard error: 421s Segmentation fault (core dumped) 421s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 421s 139 421s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 421s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_prepare_map_for_docking.py" [FAIL] 5.4s 421s Time: 5.42 421s Return code: 139 421s OKs: 0 423s Standard error: 423s Segmentation fault (core dumped) 423s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 423s 139 423s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 423s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_fcalc_fft_stability.py" [EXPECTED UNSTABLE] 3.2s 423s Time: 3.23 423s Return code: 139 423s OKs: 0 423s libtbx.python "/usr/lib/python3/dist-packages/fable/tst_ext.py" [OK] 0.1s 423s Time: 0.07 423s Return code: 0 423s OKs: 1 423s Standard out: 423s OK 423s libtbx.python "/usr/lib/python3/dist-packages/fable/tst_equivalence.py" [OK] 0.1s 423s Time: 0.07 423s Return code: 0 423s OKs: 1 423s Standard out: 423s OK 424s libtbx.python "/usr/lib/python3/dist-packages/fable/tst_read.py" [OK] 0.5s 424s Time: 0.45 424s Return code: 0 424s OKs: 1 424s Standard out: 424s OK 424s libtbx.python "/usr/lib/python3/dist-packages/fable/tst_cout.py" [OK] 0.3s 424s Time: 0.31 424s Return code: 0 424s OKs: 1 424s Standard out: 424s OK 424s libtbx.python "/usr/lib/python3/dist-packages/fable/test/tst_show_calls.py" [OK] 0.3s 424s Time: 0.26 424s Return code: 0 424s OKs: 1 424s Standard out: 424s OK 425s Standard error: 425s Segmentation fault (core dumped) 425s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 425s 139 425s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 425s libtbx.python "/usr/lib/python3/dist-packages/cma_es/tst_cma_es.py" [FAIL] 4.5s 425s Time: 4.48 425s Return code: 139 425s OKs: 0 429s libtbx.python "/usr/lib/python3/dist-packages/fable/test/tst_command_line.py" [OK] 4.8s 429s Time: 4.80 429s Return code: 0 429s OKs: 1 429s Standard out: 429s fable.split "/usr/lib/python3/dist-packages/fable/test/valid/subroutine_1.f" 429s fable.read --each "/usr/lib/python3/dist-packages/fable/test/valid/write_star.f" 429s fable.read --warnings "/usr/lib/python3/dist-packages/fable/test/valid/equivalence_mixed.f" 429s fable.show_calls --write-graphviz-dot=tmp.dot --top-procedure=sub "/usr/lib/python3/dist-packages/fable/test/valid/external_arg_layers.f" 429s fable.show_calls "/usr/lib/python3/dist-packages/fable/test/valid/dependency_cycle.f" 429s fable.fem_include_search_paths --with-quotes 429s fable.cout --each "/usr/lib/python3/dist-packages/fable/test/valid/write_star.f" 429s fable.cout "/usr/lib/python3/dist-packages/fable/test/valid/common_variants.f" 429s fable.cout "/usr/lib/python3/dist-packages/fable/test/valid/subroutine_3.f" --top-procedure=sub3 --fortran-file-comments 429s fable.cout --compile "/usr/lib/python3/dist-packages/fable/test/valid/write_star.f" 429s fable.cout --namespace=test --run "/usr/lib/python3/dist-packages/fable/test/valid/write_star.f" 429s fable.cout --example 429s fable.cout /usr/lib/python3/dist-packages/fable/test/valid/sf.f --namespace example --run 429s fable.cout "/usr/lib/python3/dist-packages/fable/test/valid/dynamic_parameters_1.f" --dynamic-parameter="int root_size=1" 429s OK 432s libtbx.python "/usr/lib/python3/dist-packages/fable/tst_cout_compile.py" stop [OK] 2.8s 432s Time: 2.83 432s Return code: 0 432s OKs: 1 432s Standard out: 432s g++ -o "stop_bare_fem" -Wall -Wno-sign-compare -Winvalid-pch -Wno-deprecated-declarations -g -O0 -I"/usr/lib/python3/dist-packages/fable" -I"/usr/lib/python3/dist-packages" "stop_bare_fem.cpp" 432s g++ -o "stop_integer_fem" -Wall -Wno-sign-compare -Winvalid-pch -Wno-deprecated-declarations -g -O0 -I"/usr/lib/python3/dist-packages/fable" -I"/usr/lib/python3/dist-packages" "stop_integer_fem.cpp" 432s g++ -o "stop_string_fem" -Wall -Wno-sign-compare -Winvalid-pch -Wno-deprecated-declarations -g -O0 -I"/usr/lib/python3/dist-packages/fable" -I"/usr/lib/python3/dist-packages" "stop_string_fem.cpp" 432s OK 432s usr+sys time: 0.07 seconds 432s wall clock time: 2.80 seconds 434s libtbx.python "/usr/lib/python3/dist-packages/fable/test/tst_separate_files.py" [OK] 8.7s 434s Time: 8.71 434s Return code: 0 434s OKs: 1 434s Standard out: 434s g++ -o "top.o" -c -Wall -Wno-sign-compare -Winvalid-pch -Wno-deprecated-declarations -g -O0 -I"/usr/lib/python3/dist-packages/fable" -I"/usr/lib/python3/dist-packages" "top.cpp" 434s g++ -o "functions.o" -c -Wall -Wno-sign-compare -Winvalid-pch -Wno-deprecated-declarations -g -O0 -I"/usr/lib/python3/dist-packages/fable" -I"/usr/lib/python3/dist-packages" "functions.cpp" 434s g++ -o "tst_separate_files" -Wall -Wno-sign-compare -Winvalid-pch -Wno-deprecated-declarations -g -O0 -I"/usr/lib/python3/dist-packages/fable" -I"/usr/lib/python3/dist-packages" "top.o" "functions.o" 434s g++ -o "top.o" -c -Wall -Wno-sign-compare -Winvalid-pch -Wno-deprecated-declarations -g -O0 -I"/usr/lib/python3/dist-packages/fable" -I"/usr/lib/python3/dist-packages" "top.cpp" 434s g++ -o "subs.o" -c -Wall -Wno-sign-compare -Winvalid-pch -Wno-deprecated-declarations -g -O0 -I"/usr/lib/python3/dist-packages/fable" -I"/usr/lib/python3/dist-packages" "subs.cpp" 434s g++ -o "tst_separate_files" -Wall -Wno-sign-compare -Winvalid-pch -Wno-deprecated-declarations -g -O0 -I"/usr/lib/python3/dist-packages/fable" -I"/usr/lib/python3/dist-packages" "top.o" "subs.o" 434s g++ -o "top.o" -c -Wall -Wno-sign-compare -Winvalid-pch -Wno-deprecated-declarations -g -O0 -I"/usr/lib/python3/dist-packages/fable" -I"/usr/lib/python3/dist-packages" "top.cpp" 434s g++ -o "subs.o" -c -Wall -Wno-sign-compare -Winvalid-pch -Wno-deprecated-declarations -g -O0 -I"/usr/lib/python3/dist-packages/fable" -I"/usr/lib/python3/dist-packages" "subs.cpp" 434s g++ -o "functions.o" -c -Wall -Wno-sign-compare -Winvalid-pch -Wno-deprecated-declarations -g -O0 -I"/usr/lib/python3/dist-packages/fable" -I"/usr/lib/python3/dist-packages" "functions.cpp" 434s g++ -o "tst_separate_files" -Wall -Wno-sign-compare -Winvalid-pch -Wno-deprecated-declarations -g -O0 -I"/usr/lib/python3/dist-packages/fable" -I"/usr/lib/python3/dist-packages" "top.o" "subs.o" "functions.o" 434s g++ -o "top.o" -c -Wall -Wno-sign-compare -Winvalid-pch -Wno-deprecated-declarations -g -O0 -I"/usr/lib/python3/dist-packages/fable" -I"/usr/lib/python3/dist-packages" "top.cpp" 434s g++ -o "subs.o" -c -Wall -Wno-sign-compare -Winvalid-pch -Wno-deprecated-declarations -g -O0 -I"/usr/lib/python3/dist-packages/fable" -I"/usr/lib/python3/dist-packages" "subs.cpp" 434s g++ -o "tst_separate_files" -Wall -Wno-sign-compare -Winvalid-pch -Wno-deprecated-declarations -g -O0 -I"/usr/lib/python3/dist-packages/fable" -I"/usr/lib/python3/dist-packages" "top.o" "subs.o" 434s g++ -o "top.o" -c -Wall -Wno-sign-compare -Winvalid-pch -Wno-deprecated-declarations -g -O0 -I"/usr/lib/python3/dist-packages/fable" -I"/usr/lib/python3/dist-packages" "top.cpp" 434s g++ -o "subs.o" -c -Wall -Wno-sign-compare -Winvalid-pch -Wno-deprecated-declarations -g -O0 -I"/usr/lib/python3/dist-packages/fable" -I"/usr/lib/python3/dist-packages" "subs.cpp" 434s g++ -o "functions.o" -c -Wall -Wno-sign-compare -Winvalid-pch -Wno-deprecated-declarations -g -O0 -I"/usr/lib/python3/dist-packages/fable" -I"/usr/lib/python3/dist-packages" "functions.cpp" 434s g++ -o "tst_separate_files" -Wall -Wno-sign-compare -Winvalid-pch -Wno-deprecated-declarations -g -O0 -I"/usr/lib/python3/dist-packages/fable" -I"/usr/lib/python3/dist-packages" "top.o" "subs.o" "functions.o" 434s OK 434s usr+sys time: 0.16 seconds 434s wall clock time: 8.69 seconds 434s libtbx.python "/usr/lib/python3/dist-packages/gltbx/tst_ellipsoids.py" [OK] 0.2s 434s Time: 0.24 434s Return code: 0 434s OKs: 1 434s Standard out: 434s OK 437s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 437s 139 437s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 437s libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_mrc_io.py" [FAIL] 2.5s 437s Time: 2.49 437s Return code: 139 437s OKs: 0 437s Standard error: 437s Segmentation fault (core dumped) 437s libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_wildcard.py" [OK] 0.1s 437s Time: 0.06 437s Return code: 0 437s OKs: 1 437s Standard out: 437s OK 438s libtbx.python "/usr/lib/python3/dist-packages/fable/test/tst_io.py" [OK] 6.1s 438s Time: 6.15 438s Return code: 0 438s OKs: 1 438s Standard out: 438s OK 438s usr+sys time: 0.11 seconds 438s wall clock time: 6.12 seconds 438s libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_simple_parser.py" [OK] 0.0s 438s Time: 0.05 438s Return code: 0 438s OKs: 1 438s Standard out: 438s OK 440s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 440s 139 440s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 440s libtbx.python "/usr/lib/python3/dist-packages/iotbx/gui_tools/tst.py" [FAIL] 2.8s 440s Time: 2.79 440s Return code: 139 440s OKs: 0 440s Standard error: 440s Segmentation fault (core dumped) 440s libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_pdb_cif_inputs.py" [OK] 0.2s 440s Time: 0.19 440s Return code: 0 440s OKs: 1 440s Standard out: 440s OK 442s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 442s 139 442s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 442s libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_phil.py" [FAIL] 3.5s 442s Time: 3.52 442s Return code: 139 442s OKs: 0 442s Standard error: 442s Segmentation fault (core dumped) 445s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 445s 139 445s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 445s libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_data_manager.py" [FAIL] 5.6s 445s Time: 5.60 445s Return code: 139 445s OKs: 0 445s Standard error: 445s Segmentation fault (core dumped) 448s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 448s 139 448s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 448s libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_map_manager_wrapping.py" [FAIL] 6.1s 448s Time: 6.07 448s Return code: 139 448s OKs: 0 448s Standard error: 448s Segmentation fault (core dumped) 448s libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_map_model_manager.py" [OK] 0.5s 448s Time: 0.49 448s Return code: 0 448s OKs: 1 448s Standard out: 448s Skip test_01, chem_data not available 448s OK 449s libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_map_model_manager_2.py" [OK] 0.5s 449s Time: 0.50 449s Return code: 0 449s OKs: 0 449s Standard out: 449s chem_data is not available, skipping 449s libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_map_model_manager_3.py" [OK] 0.5s 449s Time: 0.49 449s Return code: 0 449s OKs: 1 449s Standard out: 449s Skipped: Requires phenix module 449s OK 449s libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_map_model_manager_4.py" [OK] 0.1s 449s Time: 0.11 449s Return code: 0 449s OKs: 1 449s Standard out: 449s Skipping tst_map_model_manager_4 tests becuase Phenix is not available. 449s OK 450s libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_map_model_manager_model_sharpening_5.py" [OK] 0.5s 450s Time: 0.47 450s Return code: 0 450s OKs: 1 450s Standard out: 450s Skip test_01, chem_data not available 450s OK 450s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 450s 139 450s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 450s libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_map_manager.py" [FAIL] 4.9s 450s Time: 4.91 450s Return code: 139 450s OKs: 0 450s Standard error: 450s Segmentation fault (core dumped) 450s libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_map_model_manager_model_sharpening_5_cif.py" [OK] 0.5s 450s Time: 0.48 450s Return code: 0 450s OKs: 1 450s Standard out: 450s Skip test_01, chem_data not available 450s OK 451s libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_map_model_manager_call_consistency.py" [OK] 0.5s 451s Time: 0.48 451s Return code: 0 451s OKs: 1 451s Standard out: 451s 451s Expected and actual args in calls for with_bounds 451s 451s box.with_bounds.__init__ : 451s Expected :['log', 'lower_bounds', 'map_manager', 'model', 'model_can_be_outside_bounds', 'require_match_unit_cell_crystal_symmetry', 'self', 'stay_inside_current_map', 'upper_bounds', 'use_cubic_boxing', 'wrapping'] 451s Found : ['log', 'lower_bounds', 'map_manager', 'model', 'model_can_be_outside_bounds', 'require_match_unit_cell_crystal_symmetry', 'self', 'stay_inside_current_map', 'upper_bounds', 'use_cubic_boxing', 'wrapping'] 451s 451s box_all_maps_with_bounds_and_shift_origin : 451s Expected :['extract_box', 'lower_bounds', 'model_can_be_outside_bounds', 'require_match_unit_cell_crystal_symmetry', 'self', 'stay_inside_current_map', 'upper_bounds', 'use_cubic_boxing'] 451s Found : ['boundary_to_smoothing_ratio', 'extract_box', 'lower_bounds', 'model_can_be_outside_bounds', 'require_match_unit_cell_crystal_symmetry', 'self', 'soft_mask_around_edges', 'soft_mask_radius', 'stay_inside_current_map', 'upper_bounds', 'use_cubic_boxing'] 451s 451s extract_all_maps_with_bounds : 451s Expected :['lower_bounds', 'model_can_be_outside_bounds', 'require_match_unit_cell_crystal_symmetry', 'self', 'stay_inside_current_map', 'upper_bounds', 'use_cubic_boxing'] 451s Found : ['boundary_to_smoothing_ratio', 'lower_bounds', 'model_can_be_outside_bounds', 'require_match_unit_cell_crystal_symmetry', 'self', 'soft_mask_around_edges', 'soft_mask_radius', 'stay_inside_current_map', 'upper_bounds', 'use_cubic_boxing'] 451s 451s Expected and actual args in calls for around_model 451s 451s box.around_model.__init__ : 451s Expected :['box_cushion', 'log', 'map_manager', 'model', 'model_can_be_outside_bounds', 'require_match_unit_cell_crystal_symmetry', 'self', 'stay_inside_current_map', 'use_cubic_boxing', 'wrapping'] 451s Found : ['box_cushion', 'log', 'map_manager', 'model', 'model_can_be_outside_bounds', 'require_match_unit_cell_crystal_symmetry', 'self', 'stay_inside_current_map', 'use_cubic_boxing', 'wrapping'] 451s 451s box_all_maps_around_model_and_shift_origin : 451s Expected :['box_cushion', 'extract_box', 'model_can_be_outside_bounds', 'require_match_unit_cell_crystal_symmetry', 'select_unique_by_ncs', 'selection', 'selection_string', 'self', 'stay_inside_current_map', 'use_cubic_boxing'] 451s Found : ['boundary_to_smoothing_ratio', 'box_cushion', 'extract_box', 'model_can_be_outside_bounds', 'require_match_unit_cell_crystal_symmetry', 'select_unique_by_ncs', 'selection', 'selection_string', 'self', 'soft_mask_around_edges', 'soft_mask_radius', 'stay_inside_current_map', 'use_cubic_boxing'] 451s 451s extract_all_maps_around_model : 451s Expected :['box_cushion', 'model_can_be_outside_bounds', 'require_match_unit_cell_crystal_symmetry', 'select_unique_by_ncs', 'selection', 'selection_string', 'self', 'stay_inside_current_map', 'use_cubic_boxing'] 451s Found : ['boundary_to_smoothing_ratio', 'box_cushion', 'model_can_be_outside_bounds', 'require_match_unit_cell_crystal_symmetry', 'select_unique_by_ncs', 'selection', 'selection_string', 'self', 'soft_mask_around_edges', 'soft_mask_radius', 'stay_inside_current_map', 'use_cubic_boxing'] 451s 451s Expected and actual args in calls for around_density 451s 451s box.around_density.__init__ : 451s Expected :['box_cushion', 'get_half_height_width', 'log', 'map_manager', 'model', 'model_can_be_outside_bounds', 'require_match_unit_cell_crystal_symmetry', 'self', 'stay_inside_current_map', 'threshold', 'use_cubic_boxing', 'wrapping'] 451s Found : ['box_cushion', 'get_half_height_width', 'log', 'map_manager', 'model', 'model_can_be_outside_bounds', 'require_match_unit_cell_crystal_symmetry', 'self', 'stay_inside_current_map', 'threshold', 'use_cubic_boxing', 'wrapping'] 451s 451s box_all_maps_around_density_and_shift_origin : 451s Expected :['box_cushion', 'extract_box', 'get_half_height_width', 'map_id', 'model_can_be_outside_bounds', 'require_match_unit_cell_crystal_symmetry', 'self', 'stay_inside_current_map', 'threshold', 'use_cubic_boxing'] 451s Found : ['boundary_to_smoothing_ratio', 'box_cushion', 'extract_box', 'get_half_height_width', 'map_id', 'model_can_be_outside_bounds', 'require_match_unit_cell_crystal_symmetry', 'self', 'soft_mask_around_edges', 'soft_mask_radius', 'stay_inside_current_map', 'threshold', 'use_cubic_boxing'] 451s 451s extract_all_maps_around_density : 451s Expected :['box_cushion', 'get_half_height_width', 'map_id', 'model_can_be_outside_bounds', 'require_match_unit_cell_crystal_symmetry', 'self', 'stay_inside_current_map', 'threshold', 'use_cubic_boxing'] 451s Found : ['boundary_to_smoothing_ratio', 'box_cushion', 'get_half_height_width', 'map_id', 'model_can_be_outside_bounds', 'require_match_unit_cell_crystal_symmetry', 'self', 'soft_mask_around_edges', 'soft_mask_radius', 'stay_inside_current_map', 'threshold', 'use_cubic_boxing'] 451s 451s Expected and actual args in calls for around_mask 451s 451s box.around_mask.__init__ : 451s Expected :['box_cushion', 'log', 'map_manager', 'mask_as_map_manager', 'model', 'model_can_be_outside_bounds', 'require_match_unit_cell_crystal_symmetry', 'self', 'stay_inside_current_map', 'use_cubic_boxing', 'wrapping'] 451s Found : ['box_cushion', 'log', 'map_manager', 'mask_as_map_manager', 'model', 'model_can_be_outside_bounds', 'require_match_unit_cell_crystal_symmetry', 'self', 'stay_inside_current_map', 'use_cubic_boxing', 'wrapping'] 451s 451s box_all_maps_around_mask_and_shift_origin : 451s Expected :['box_cushion', 'extract_box', 'mask_id', 'model_can_be_outside_bounds', 'require_match_unit_cell_crystal_symmetry', 'self', 'stay_inside_current_map', 'use_cubic_boxing'] 451s Found : ['boundary_to_smoothing_ratio', 'box_cushion', 'extract_box', 'mask_id', 'model_can_be_outside_bounds', 'require_match_unit_cell_crystal_symmetry', 'self', 'soft_mask_around_edges', 'soft_mask_radius', 'stay_inside_current_map', 'use_cubic_boxing'] 451s 451s extract_all_maps_around_mask : 451s Expected :['box_cushion', 'mask_id', 'model_can_be_outside_bounds', 'require_match_unit_cell_crystal_symmetry', 'self', 'stay_inside_current_map', 'use_cubic_boxing'] 451s Found : ['boundary_to_smoothing_ratio', 'box_cushion', 'mask_id', 'model_can_be_outside_bounds', 'require_match_unit_cell_crystal_symmetry', 'self', 'soft_mask_around_edges', 'soft_mask_radius', 'stay_inside_current_map', 'use_cubic_boxing'] 451s 451s Expected and actual args in calls for around_unique 451s 451s box.around_unique.__init__ : 451s Expected :['box_cushion', 'chain_type', 'keep_low_density', 'keep_this_region_only', 'log', 'map_manager', 'mask_expand_ratio', 'model', 'molecular_mass', 'regions_to_keep', 'require_match_unit_cell_crystal_symmetry', 'residues_per_region', 'resolution', 'self', 'sequence', 'soft_mask', 'solvent_content', 'stay_inside_current_map', 'symmetry', 'target_ncs_au_model', 'use_cubic_boxing', 'use_symmetry_in_extract_unique', 'wrapping'] 451s Found : ['box_cushion', 'chain_type', 'keep_low_density', 'keep_this_region_only', 'log', 'map_manager', 'mask_expand_ratio', 'model', 'molecular_mass', 'regions_to_keep', 'require_match_unit_cell_crystal_symmetry', 'residues_per_region', 'resolution', 'self', 'sequence', 'soft_mask', 'solvent_content', 'stay_inside_current_map', 'symmetry', 'target_ncs_au_model', 'use_cubic_boxing', 'use_symmetry_in_extract_unique', 'wrapping'] 451s 451s box_all_maps_around_unique_and_shift_origin : 451s Expected :['box_cushion', 'chain_type', 'extract_box', 'keep_low_density', 'keep_this_region_only', 'mask_expand_ratio', 'molecular_mass', 'regions_to_keep', 'require_match_unit_cell_crystal_symmetry', 'residues_per_region', 'resolution', 'self', 'sequence', 'soft_mask', 'solvent_content', 'stay_inside_current_map', 'symmetry', 'target_ncs_au_model', 'use_cubic_boxing', 'use_symmetry_in_extract_unique'] 451s Found : ['boundary_to_smoothing_ratio', 'box_cushion', 'chain_type', 'extract_box', 'keep_low_density', 'keep_this_region_only', 'mask_expand_ratio', 'molecular_mass', 'regions_to_keep', 'require_match_unit_cell_crystal_symmetry', 'residues_per_region', 'resolution', 'self', 'sequence', 'soft_mask', 'soft_mask_around_edges', 'soft_mask_radius', 'solvent_content', 'stay_inside_current_map', 'symmetry', 'target_ncs_au_model', 'use_cubic_boxing', 'use_symmetry_in_extract_unique'] 451s 451s extract_all_maps_around_unique : 451s Expected :['box_cushion', 'chain_type', 'keep_low_density', 'keep_this_region_only', 'mask_expand_ratio', 'molecular_mass', 'regions_to_keep', 'require_match_unit_cell_crystal_symmetry', 'residues_per_region', 'resolution', 'self', 'sequence', 'soft_mask', 'solvent_content', 'stay_inside_current_map', 'symmetry', 'target_ncs_au_model', 'use_cubic_boxing', 'use_symmetry_in_extract_unique'] 451s Found : ['boundary_to_smoothing_ratio', 'box_cushion', 'chain_type', 'keep_low_density', 'keep_this_region_only', 'mask_expand_ratio', 'molecular_mass', 'regions_to_keep', 'require_match_unit_cell_crystal_symmetry', 'residues_per_region', 'resolution', 'self', 'sequence', 'soft_mask', 'soft_mask_around_edges', 'soft_mask_radius', 'solvent_content', 'stay_inside_current_map', 'symmetry', 'target_ncs_au_model', 'use_cubic_boxing', 'use_symmetry_in_extract_unique'] 451s 451s Expected and actual args in calls for around_atoms 451s 451s cctbx.maptbx.mask.create_mask_around_atoms.__init__ : 451s Expected :['invert_mask', 'map_manager', 'mask_atoms_atom_radius', 'model', 'n_real', 'self', 'wrapping', 'xray_structure'] 451s Found : ['invert_mask', 'map_manager', 'mask_atoms_atom_radius', 'model', 'n_real', 'self', 'wrapping', 'xray_structure'] 451s 451s map_model_manager.create_mask_around_atoms : 451s Expected :['invert_mask', 'mask_atoms_atom_radius', 'mask_id', 'model', 'self', 'soft_mask', 'soft_mask_radius'] 451s Found : ['invert_mask', 'mask_atoms_atom_radius', 'mask_id', 'model', 'self', 'soft_mask', 'soft_mask_radius'] 451s 451s Expected and actual args in calls for around_edges 451s 451s cctbx.maptbx.mask.create_mask_around_edges.__init__ : 451s Expected :['boundary_radius', 'map_manager', 'self'] 451s Found : ['boundary_radius', 'map_manager', 'self'] 451s 451s map_model_manager.create_mask_around_edges : 451s Expected :['boundary_radius', 'mask_id', 'self'] 451s Found : ['boundary_radius', 'boundary_to_smoothing_ratio', 'mask_id', 'self', 'soft_mask_radius'] 451s 451s Expected and actual args in calls for around_density 451s 451s cctbx.maptbx.mask.create_mask_around_density.__init__ : 451s Expected :['map_manager', 'molecular_mass', 'resolution', 'self', 'sequence', 'solvent_content'] 451s Found : ['map_manager', 'molecular_mass', 'resolution', 'self', 'sequence', 'solvent_content'] 451s 451s map_model_manager.create_mask_around_density : 451s Expected :['map_id', 'mask_id', 'resolution', 'self', 'soft_mask', 'soft_mask_radius', 'solvent_content'] 451s Found : ['map_id', 'mask_id', 'resolution', 'self', 'soft_mask', 'soft_mask_radius', 'solvent_content'] 451s OK 451s libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_map_model_manager_external_sharpening_7.py" [OK] 0.5s 451s Time: 0.48 451s Return code: 0 451s OKs: 1 451s Standard out: 451s Skip test_01, chem_data not available 451s OK 451s libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_map_model_manager_half_map_sharpening_6.py" [OK] 0.5s 451s Time: 0.48 451s Return code: 0 451s OKs: 1 451s Standard out: 451s Skip test_01, chem_data not available 451s OK 451s libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_map_model_manager_tls_from_map_8.py" [OK] 0.5s 451s Time: 0.48 451s Return code: 0 451s OKs: 1 451s Standard out: 451s Skip test_01, chem_data not available 451s OK 452s libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_map_model_manager_cif.py" [OK] 0.5s 452s Time: 0.48 452s Return code: 0 452s OKs: 1 452s Standard out: 452s Skip test_01, chem_data not available 452s OK 455s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 455s 139 455s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 455s libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_map_model_manager_9_remove_origin_shift_and_unit_cell_crystal_symmetry.py" [FAIL] 4.0s 455s Time: 4.00 455s Return code: 139 455s OKs: 0 455s Standard error: 455s Segmentation fault (core dumped) 456s libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_map_model_manager_local_resolution_10.py" [OK] 0.5s 456s Time: 0.48 456s Return code: 0 456s OKs: 1 456s Standard out: 456s Skip test_01, chem_data not available 456s OK 459s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 459s 139 459s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 459s libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_map_model_manager_9_remove_origin_shift_and_unit_cell_crystal_symmetry_cif.py" [FAIL] 7.0s 459s Time: 7.05 459s Return code: 139 459s OKs: 0 459s Standard error: 459s Segmentation fault (core dumped) 459s libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_patterson.py" [OK] 0.0s 459s Time: 0.05 459s Return code: 0 459s OKs: 1 459s Standard out: 459s phenix_regression not available, skipping 459s OK 459s libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_restraints_merge.py" [OK] 0.2s 459s Time: 0.20 459s Return code: 0 459s OKs: 0 461s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 461s 139 461s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 461s libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_map_tools.py" [FAIL] 5.5s 461s Time: 5.47 461s Return code: 139 461s OKs: 0 461s Standard error: 461s Segmentation fault (core dumped) 461s libtbx.python "/usr/lib/python3/dist-packages/iotbx/ranges.py" [OK] 0.0s 461s Time: 0.02 461s Return code: 0 461s OKs: 1 461s Standard out: 461s OK 464s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 464s 139 464s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 464s libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_atom_selections_10k.py" [FAIL] 4.7s 464s Time: 4.67 464s Return code: 139 464s OKs: 0 464s Standard error: 464s Segmentation fault (core dumped) 464s libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_poscar.py" [OK] 0.1s 464s Time: 0.06 464s Return code: 0 464s OKs: 1 464s Standard out: 464s Skipping POSCAR tests: input files not available 464s OK 466s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 466s 139 466s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 466s libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_crystal_symmetry_from_any.py" [FAIL] 5.1s 466s Time: 5.08 466s Return code: 139 466s OKs: 0 466s Standard error: 466s Segmentation fault (core dumped) 469s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 469s 139 469s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 469s libtbx.python "/usr/lib/python3/dist-packages/iotbx/kriber/tst_strudat.py" [FAIL] 4.9s 469s Time: 4.95 469s Return code: 139 469s OKs: 0 469s Standard error: 469s Segmentation fault (core dumped) 471s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 471s 139 471s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 471s libtbx.python "/usr/lib/python3/dist-packages/iotbx/cif/tests/tst_geometry.py" [FAIL] 4.7s 471s Time: 4.72 471s Return code: 139 471s OKs: 0 471s Standard error: 471s Segmentation fault (core dumped) 474s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 474s 139 474s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 474s libtbx.python "/usr/lib/python3/dist-packages/iotbx/cif/tests/tst_lex_parse_build.py" [FAIL] 5.1s 474s Standard error: 474s Segmentation fault (core dumped) 474s Time: 5.09 474s Return code: 139 474s OKs: 0 476s Standard error: 476s Segmentation fault (core dumped) 476s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 476s 139 476s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 476s libtbx.python "/usr/lib/python3/dist-packages/iotbx/cif/tests/tst_model.py" [FAIL] 5.1s 476s Time: 5.12 476s Return code: 139 476s OKs: 0 478s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 478s 1 478s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 478s libtbx.python "/usr/lib/python3/dist-packages/iotbx/cif/tests/tst_validation.py" [FAIL] 1.4s 478s Time: 1.43 478s Return code: 1 478s OKs: 0 478s Standard out: 478s Skipping tst_validation.exercise_smart_load() because of URLError. 478s Standard error: 478s Traceback (most recent call last): 478s File "/usr/lib/python3.13/urllib/request.py", line 1541, in ftp_open 478s fw = self.connect_ftp(user, passwd, host, port, dirs, req.timeout) 478s File "/usr/lib/python3.13/urllib/request.py", line 1561, in connect_ftp 478s return ftpwrapper(user, passwd, host, port, dirs, timeout, 478s persistent=False) 478s File "/usr/lib/python3.13/urllib/request.py", line 2409, in __init__ 478s self.init() 478s ~~~~~~~~~^^ 478s File "/usr/lib/python3.13/urllib/request.py", line 2418, in init 478s self.ftp.connect(self.host, self.port, self.timeout) 478s ~~~~~~~~~~~~~~~~^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 478s File "/usr/lib/python3.13/ftplib.py", line 158, in connect 478s self.sock = socket.create_connection((self.host, self.port), self.timeout, 478s ~~~~~~~~~~~~~~~~~~~~~~~~^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 478s source_address=self.source_address) 478s ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 478s File "/usr/lib/python3.13/socket.py", line 864, in create_connection 478s raise exceptions[0] 478s File "/usr/lib/python3.13/socket.py", line 849, in create_connection 478s sock.connect(sa) 478s ~~~~~~~~~~~~^^^^ 478s ConnectionRefusedError: [Errno 111] Connection refused 478s 478s The above exception was the direct cause of the following exception: 478s 478s Traceback (most recent call last): 478s File "/usr/lib/python3/dist-packages/iotbx/cif/tests/tst_validation.py", line 327, in 478s exercise(sys.argv[1:]) 478s ~~~~~~~~^^^^^^^^^^^^^^ 478s File "/usr/lib/python3/dist-packages/iotbx/cif/tests/tst_validation.py", line 26, in exercise 478s exercise_validation() 478s ~~~~~~~~~~~~~~~~~~~^^ 478s File "/usr/lib/python3/dist-packages/iotbx/cif/tests/tst_validation.py", line 29, in exercise_validation 478s cd = validation.smart_load_dictionary(name="cif_core.dic") 478s File "/usr/lib/python3/dist-packages/iotbx/cif/validation.py", line 111, in smart_load_dictionary 478s url = locate_dictionary(name, registry_location=registry_location) 478s File "/usr/lib/python3/dist-packages/iotbx/cif/validation.py", line 129, in locate_dictionary 478s cm = cif.reader(file_object=urlopen(registry_location)).model() 478s ~~~~~~~^^^^^^^^^^^^^^^^^^^ 478s File "/usr/lib/python3.13/urllib/request.py", line 189, in urlopen 478s return opener.open(url, data, timeout) 478s ~~~~~~~~~~~^^^^^^^^^^^^^^^^^^^^ 478s File "/usr/lib/python3.13/urllib/request.py", line 489, in open 478s response = self._open(req, data) 478s File "/usr/lib/python3.13/urllib/request.py", line 506, in _open 478s result = self._call_chain(self.handle_open, protocol, protocol + 478s '_open', req) 478s File "/usr/lib/python3.13/urllib/request.py", line 466, in _call_chain 478s result = func(*args) 478s File "/usr/lib/python3.13/urllib/request.py", line 1558, in ftp_open 478s raise URLError(exp) from exp 478s urllib.error.URLError: 478s libtbx.python "/usr/lib/python3/dist-packages/iotbx/cif/tests/tst_parser.py" [OK] 0.2s 478s Time: 0.18 478s Return code: 0 478s OKs: 0 478s Standard out: 478s 1 0 0 478s 1 0 0 478s 1 0 0 478s 1 0 0 478s 1 0 0 478s 1 0 0 478s 1 0 0 478s 1 0 0 478s 1 0 0 478s 0 0 0 478s 0 0 0 478s 1 0 0 478s 0 0 0 478s 0 0 0 478s 1 0 0 478s 1 0 0 478s 1 0 0 478s 1 0 0 478s 1 0 0 478s 1 0 0 478s 1 0 0 478s 1 0 0 478s 1 0 0 478s 1 0 0 478s 1 0 0 478s 1 0 0 478s 0 0 0 478s 1 0 0 478s 1 0 0 478s 1 0 0 478s 1 0 0 478s 1 0 0 478s 0 0 0 478s 0 1 0 478s 0 1 0 478s 0 0 0 478s 0 1 0 478s 0 1 0 478s 0 1 0 478s 0 1 0 478s 0 1 0 478s 0 1 0 478s 0 1 0 478s 0 1 0 478s 0 1 0 478s 0 1 0 478s 0 1 0 478s 0 1 0 478s 0 1 0 478s 0 1 0 478s 0 1 0 478s 0 1 0 478s 0 1 0 478s 0 1 0 478s 0 1 0 478s 0 1 0 478s 0 1 0 478s 0 1 0 478s 0 1 0 478s 0 1 0 478s 0 1 0 478s 0 1 0 478s 0 1 0 478s 0 1 0 478s 0 1 0 478s 0 1 0 478s 0 1 0 478s 0 1 0 478s 0 1 0 478s 0 1 0 478s 0 1 0 478s 0 1 0 478s 0 1 0 478s 0 1 0 478s 0 1 0 478s 0 1 0 478s 0 1 0 478s 0 1 0 478s 0 1 0 478s 0 1 0 478s 0 1 0 478s 0 1 0 478s 0 1 0 478s 0 1 0 478s 0 1 0 478s 0 1 0 478s 0 1 0 478s 0 1 0 478s 0 1 0 478s 0 1 0 478s 0 1 0 478s 0 1 0 478s 0 1 0 478s 0 1 0 478s 0 1 0 478s 0 1 0 478s 0 1 0 478s 0 1 0 478s 0 1 0 478s 0 1 0 478s 0 1 0 478s 0 1 0 478s 0 1 0 478s 0 1 0 478s 0 1 0 478s 0 1 0 478s 0 1 0 478s 0 1 0 478s 0 1 0 478s 0 1 0 478s 0 1 0 478s 0 1 0 478s 0 1 0 478s 0 1 0 478s 0 1 0 478s 0 1 0 478s 0 1 0 478s 0 1 0 478s 0 1 0 478s 0 1 0 478s 0 1 0 478s 0 1 0 478s 0 1 0 478s 0 1 0 478s 0 1 0 478s 0 1 0 478s 0 1 0 478s 1 0 0 478s 2 0 0 478s 2 0 0 478s 2 0 0 478s 2 0 0 478s 2 0 0 478s 2 0 0 478s 2 0 0 478s 2 0 0 478s 2 0 0 478s 2 0 0 478s 2 0 0 478s 2 0 0 478s 2 0 0 478s 2 0 0 478s 2 0 0 478s 2 0 0 478s 2 0 0 478s 2 0 0 478s 2 0 0 478s 2 0 0 478s 2 0 0 478s 2 0 0 478s 2 0 0 478s 2 0 0 478s 2 0 0 478s 2 0 0 478s 2 0 0 478s 2 0 0 478s 2 0 0 478s 2 0 0 478s 2 0 0 478s 2 0 0 478s 2 0 0 478s 2 0 0 478s 2 0 0 478s 2 0 0 478s 2 0 0 478s 2 0 0 478s 2 0 0 478s 2 0 0 478s 2 0 0 478s 2 0 0 478s 2 0 0 478s 2 0 0 478s 2 0 0 478s 2 0 0 478s 2 0 0 478s 2 0 0 478s 2 0 0 478s 2 0 0 478s 2 0 0 478s 2 0 0 478s 2 0 0 478s 2 0 0 478s 2 0 0 478s 2 0 0 478s 2 0 0 478s 2 0 0 478s 2 0 0 478s 2 0 0 478s 2 0 0 478s 2 0 0 478s 2 0 0 478s 2 0 0 478s 2 0 0 478s 2 0 0 478s 2 0 0 478s 2 0 0 478s 2 0 0 478s 2 0 0 478s 2 0 0 478s 2 0 0 478s 2 0 0 478s 2 0 0 478s 2 0 0 478s 2 0 0 478s 2 0 0 478s 2 0 0 478s 2 0 0 478s 2 0 0 478s 2 0 0 478s 2 0 0 478s 2 0 0 478s 2 0 0 478s 2 0 0 478s 2 0 0 478s 2 0 0 478s 2 0 0 478s 2 0 0 478s 2 0 0 478s 2 0 0 478s 2 0 0 478s 2 0 0 478s 2 0 0 478s 2 0 0 478s 2 0 0 478s 2 0 0 478s 2 0 0 478s 2 0 0 478s 2 0 0 478s 2 0 0 478s 2 0 0 478s 2 0 0 478s 2 0 0 478s 2 0 0 478s 2 0 0 478s 2 0 0 478s 2 0 0 478s 2 0 0 478s 2 0 0 478s 2 0 0 478s 2 0 0 478s 2 0 0 478s 2 0 0 478s 2 0 0 478s 2 0 0 478s 2 0 0 478s 2 0 0 478s 2 0 0 478s 2 0 0 478s 2 0 0 478s 2 0 0 478s 2 0 0 478s 2 0 0 478s 2 0 0 478s 2 0 0 478s 2 0 0 478s 2 0 0 478s libtbx.python "/usr/lib/python3/dist-packages/iotbx/cif/tests/tst_citations.py" [OK] 0.2s 478s Time: 0.25 478s Return code: 0 478s OKs: 1 478s Standard out: 478s OK 478s libtbx.python "/usr/lib/python3/dist-packages/iotbx/cif/tests/tst_model_builder.py" [OK] 0.2s 478s Time: 0.17 478s Return code: 0 478s OKs: 0 479s Standard error: 479s Segmentation fault (core dumped) 479s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 479s 139 479s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 479s libtbx.python "/usr/lib/python3/dist-packages/iotbx/cif/tests/tst_restraints.py" [FAIL] 4.9s 479s Time: 4.90 479s Return code: 139 479s OKs: 0 481s Standard error: 481s Segmentation fault (core dumped) 481s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 481s 139 481s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 481s libtbx.python "/usr/lib/python3/dist-packages/iotbx/shelx/tst_lex_parse_build.py" [FAIL] 3.1s 481s Time: 3.11 481s Return code: 139 481s OKs: 0 484s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 484s 139 484s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 484s libtbx.python "/usr/lib/python3/dist-packages/iotbx/shelx/tst_hklf.py" [FAIL] 5.0s 484s Time: 5.03 484s Return code: 139 484s OKs: 0 484s Standard error: 484s Segmentation fault (core dumped) 486s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 486s 139 486s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 486s libtbx.python "/usr/lib/python3/dist-packages/iotbx/shelx/tst_writer.py" [FAIL] 4.8s 486s Time: 4.80 486s Return code: 139 486s OKs: 0 486s Standard error: 486s Segmentation fault (core dumped) 489s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 489s 139 489s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 489s libtbx.python "/usr/lib/python3/dist-packages/iotbx/shelx/tst_fvar_encoding.py" [FAIL] 4.7s 489s Time: 4.74 489s Return code: 139 489s OKs: 0 489s Standard error: 489s Segmentation fault (core dumped) 489s libtbx.python "/usr/lib/python3/dist-packages/iotbx/pdb/tst_mmcif.py" [OK] 0.2s 489s Time: 0.19 489s Return code: 0 489s OKs: 1 489s Standard out: 489s OK 491s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 491s 134 491s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 491s libtbx.python "/usr/lib/python3/dist-packages/iotbx/pdb/tst_pdb.py" [FAIL] 5.0s 491s Time: 5.02 491s Return code: 134 491s OKs: 0 491s Standard error: 491s *** buffer overflow detected ***: terminated 491s Aborted (core dumped) 493s libtbx.python "/usr/lib/python3/dist-packages/iotbx/pdb/tst_mmcif_hierarchy_2.py" [OK] 1.7s 493s Time: 1.67 493s Return code: 0 493s OKs: 1 493s Standard out: 493s OK 493s libtbx.python "/usr/lib/python3/dist-packages/iotbx/pdb/tst_tls.py" [OK] 0.5s 493s Time: 0.47 493s Return code: 0 493s OKs: 1 493s Standard out: 493s Skipping exercise_mmcif_tls(): missing phenix_regression directory. 493s OK 493s libtbx.python "/usr/lib/python3/dist-packages/iotbx/pdb/hybrid_36.py" exercise [OK] 0.1s 493s Time: 0.08 493s Return code: 0 493s OKs: 1 493s Standard out: 493s OK 494s "/usr/lib/cctbx/python3.13/iotbx/pdb/hybrid_36_fem" [OK] 0.9s 494s Time: 0.92 494s Return code: 0 494s OKs: 0 495s Standard error: 495s *** buffer overflow detected ***: terminated 495s Aborted (core dumped) 495s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 495s 134 495s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 495s libtbx.python "/usr/lib/python3/dist-packages/iotbx/pdb/tst_mmcif_hierarchy.py" [FAIL] 6.0s 495s Time: 5.98 495s Return code: 134 495s OKs: 0 495s libtbx.python "/usr/lib/python3/dist-packages/iotbx/pdb/tst_hierarchy_atom_sort.py" [OK] 0.2s 495s Time: 0.24 495s Return code: 0 495s OKs: 1 495s Standard out: 495s OK 495s libtbx.python "/usr/lib/python3/dist-packages/iotbx/pdb/tst_hierarchy_flip_symmetric.py" [OK] 0.2s 495s Time: 0.18 495s Return code: 0 495s OKs: 0 495s Standard out: 495s chem_data is missing, skipping test 495s libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_selected_hierarchy_flip.py" [OK] 0.2s 495s Time: 0.20 495s Return code: 0 495s OKs: 0 498s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 498s 139 498s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 498s libtbx.python "/usr/lib/python3/dist-packages/iotbx/pdb/tst_hierarchy.py" [FAIL] 3.4s 498s Time: 3.41 498s Return code: 139 498s OKs: 0 498s Standard error: 498s Segmentation fault (core dumped) 500s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 500s 139 500s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 500s libtbx.python "/usr/lib/python3/dist-packages/iotbx/pdb/tst_ext.py" [FAIL] 5.0s 500s Time: 5.03 500s Return code: 139 500s OKs: 0 500s Standard error: 500s Segmentation fault (core dumped) 501s libtbx.python "/usr/lib/python3/dist-packages/iotbx/pdb/tst_rna_dna_atom_names.py" [OK] 0.2s 501s Time: 0.19 501s Return code: 0 501s OKs: 1 501s Standard out: 501s OK 501s libtbx.python "/usr/lib/python3/dist-packages/iotbx/pdb/tst_atom_name_interpretation.py" [OK] 0.2s 501s Time: 0.17 501s Return code: 0 501s OKs: 1 501s Standard out: 501s OK 501s libtbx.python "/usr/lib/python3/dist-packages/iotbx/pdb/tst_extract_rfactors_resolutions_sigma.py" [OK] 0.2s 501s Time: 0.17 501s Return code: 0 501s OKs: 1 501s Standard out: 501s OK 501s libtbx.python "/usr/lib/python3/dist-packages/iotbx/pdb/modified_aa_names.py" [OK] 0.0s 501s Time: 0.02 501s Return code: 0 501s OKs: 0 501s Standard out: 501s 2141 501s libtbx.python "/usr/lib/python3/dist-packages/iotbx/pdb/modified_rna_dna_names.py" [OK] 0.0s 501s Time: 0.02 501s Return code: 0 501s OKs: 0 501s Standard out: 501s 792 501s libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/secondary_structure/tst_sheet.py" [OK] 0.2s 501s Time: 0.17 501s Return code: 0 501s OKs: 1 501s Standard out: 501s OK 501s u+s,u,s: 0.14 0.13 0.01 503s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 503s 139 503s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 503s libtbx.python "/usr/lib/python3/dist-packages/iotbx/pdb/tst_atom_selection.py" [FAIL] 5.1s 503s Time: 5.11 503s Return code: 139 503s OKs: 0 503s Standard error: 503s Segmentation fault (core dumped) 503s libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/secondary_structure/tst_annotation_long.py" [OK] 0.2s 503s Time: 0.20 503s Return code: 0 503s OKs: 1 503s Standard out: 503s OK time = 0.011 503s libtbx.python "/usr/lib/python3/dist-packages/iotbx/pdb/secondary_structure.py" [OK] 0.2s 503s Time: 0.19 503s Return code: 0 503s OKs: 0 506s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 506s 139 506s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 506s libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/secondary_structure/tst_annotation.py" [FAIL] 4.6s 506s Time: 4.65 506s Return code: 139 506s OKs: 0 506s Standard error: 506s Segmentation fault (core dumped) 506s libtbx.python "/usr/lib/python3/dist-packages/iotbx/pdb/tst_secondary_structure.py" [OK] 0.6s 506s Time: 0.60 506s Return code: 0 506s OKs: 5 506s Standard out: 506s OK 506s OK 506s OK 506s OK 506s OK 508s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 508s 139 508s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 508s libtbx.python "/usr/lib/python3/dist-packages/iotbx/pdb/tst_atom_selection_string.py" [FAIL] 5.1s 508s Time: 5.12 508s Return code: 139 508s OKs: 0 508s Standard error: 508s Segmentation fault (core dumped) 510s libtbx.python "/usr/lib/python3/dist-packages/iotbx/pdb/tst_secondary_structure_2.py" [OK] 1.5s 510s Time: 1.45 510s Return code: 0 510s OKs: 2 510s Standard out: 510s OK 510s OK 510s libtbx.python "/usr/lib/python3/dist-packages/iotbx/pdb/remediation/tst_remediator.py" [OK] 0.5s 510s Time: 0.49 510s Return code: 0 510s OKs: 0 510s Standard out: 510s chem_data is not available for remediator tests, skipping 510s libtbx.python "/usr/lib/python3/dist-packages/iotbx/examples/pdb_to_map_simple.py" [OK] 0.2s 510s Time: 0.18 510s Return code: 0 510s OKs: 0 510s Standard out: 510s Usage: iotbx.python pdb_to_map_simple.py [options] pdb_file... 510s 510s Options: 510s -h, --help show this help message and exit 510s --d_min=FLOAT high-resolution limit for structure-factor calculation 511s Standard error: 511s Segmentation fault (core dumped) 511s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 511s 139 511s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 511s libtbx.python "/usr/lib/python3/dist-packages/iotbx/pdb/tst_utils.py" [FAIL] 4.5s 511s Time: 4.51 511s Return code: 139 511s OKs: 0 511s libtbx.python "/usr/lib/python3/dist-packages/iotbx/examples/pdb_tardy_conf_sampling_simple.py" [OK] 0.2s 511s Time: 0.18 511s Return code: 0 511s OKs: 0 511s Standard out: 511s Time importing extensions: 0.15 511s skipping test: phenix_regression not available. 513s Standard error: 513s *** buffer overflow detected ***: terminated 513s Aborted (core dumped) 513s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 513s 134 513s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 513s libtbx.python "/usr/lib/python3/dist-packages/iotbx/examples/pdb_truncate_to_ala/tst.py" [FAIL] 2.9s 513s Time: 2.90 513s Return code: 134 513s OKs: 0 517s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 517s 139 517s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 517s libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_examples.py" [FAIL] 5.7s 517s Time: 5.70 517s Return code: 139 517s OKs: 0 517s Standard error: 517s Segmentation fault (core dumped) 519s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 519s 139 519s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 519s libtbx.python "/usr/lib/python3/dist-packages/iotbx/cns/space_group_symbols.py" [FAIL] 5.5s 519s Time: 5.50 519s Return code: 139 519s OKs: 0 519s Standard error: 519s Segmentation fault (core dumped) 521s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 521s 139 521s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 521s libtbx.python "/usr/lib/python3/dist-packages/iotbx/cns/tst_cns.py" [FAIL] 4.5s 521s Time: 4.51 521s Return code: 139 521s OKs: 0 521s Standard error: 521s Segmentation fault (core dumped) 524s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 524s 139 524s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 524s libtbx.python "/usr/lib/python3/dist-packages/iotbx/scalepack/tst_merge.py" P31 [FAIL] 4.7s 524s Standard error: 524s Segmentation fault (core dumped) 524s Time: 4.73 524s Return code: 139 524s OKs: 0 526s Standard error: 526s Segmentation fault (core dumped) 526s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 526s 139 526s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 526s libtbx.python "/usr/lib/python3/dist-packages/iotbx/scalepack/no_merge_original_index.py" [FAIL] 4.7s 526s Time: 4.69 526s Return code: 139 526s OKs: 0 528s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 528s 139 528s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 528s libtbx.python "/usr/lib/python3/dist-packages/iotbx/ccp4_map/tst.py" [FAIL] 4.7s 528s Standard error: 528s Segmentation fault (core dumped) 528s Time: 4.68 528s Return code: 139 528s OKs: 0 531s Standard error: 531s Segmentation fault (core dumped) 531s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 531s 139 531s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 531s libtbx.python "/usr/lib/python3/dist-packages/iotbx/mtz/tst_ext.py" [FAIL] 5.3s 531s Time: 5.26 531s Return code: 139 531s OKs: 0 534s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 534s 139 534s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 534s libtbx.python "/usr/lib/python3/dist-packages/iotbx/mtz/tst_extract_from_symmetry_lib.py" [FAIL] 5.4s 534s Time: 5.38 534s Return code: 139 534s OKs: 0 534s Standard error: 534s /usr/lib/python3/dist-packages/ccp4io_adaptbx/__init__.py:25: UserWarning: ccp4io_adaptbx: cannot locate syminfo.lib 534s warnings.warn("ccp4io_adaptbx: cannot locate syminfo.lib") 534s Segmentation fault (core dumped) 534s libtbx.python "/usr/lib/python3/dist-packages/iotbx/mtz/tst_miller_dict.py" [OK] 0.2s 534s Time: 0.20 534s Return code: 0 534s OKs: 0 534s libtbx.python "/usr/lib/python3/dist-packages/iotbx/mtz/tst_unmerged.py" [OK] 0.2s 534s Time: 0.18 534s Return code: 0 534s OKs: 0 534s Standard out: 534s Title: . 534s Space group symbol from file: I23 534s Space group number from file: 197 534s Space group from matrices: I 2 3 (No. 197) 534s Point group symbol from file: PG23 534s Number of batches: 45 534s Number of crystals: 2 534s Number of Miller indices: 13 534s Resolution range: 39.0022 31.8451 534s History: 534s From MTZUTILS 21/11/2017 16:26:11 after history: 534s From MOSFLM run on 1/ 7/08 534s From MOSFLM run on 1/ 7/08 534s Crystal 1: 534s Name: HKL_base 534s Project: HKL_base 534s Id: 1 534s Unit cell: (78.0043, 78.0043, 78.0043, 90, 90, 90) 534s Number of datasets: 1 534s Dataset 1: 534s Name: HKL_base 534s Id: 0 534s Wavelength: 0 534s Number of columns: 18 534s label #valid %valid min max type 534s H 13 100.00% 0.00 1.00 H: index h,k,l 534s K 13 100.00% 2.00 2.00 H: index h,k,l 534s L 13 100.00% 0.00 1.00 H: index h,k,l 534s M_ISYM 13 100.00% 6.00 272.00 Y: M/ISYM, packed partial/reject flag and symmetry number 534s BATCH 13 100.00% 16.00 43.00 B: BATCH number 534s I 13 100.00% -19.71 7.39 J: intensity 534s SIGI 13 100.00% 0.41 3.05 Q: standard deviation 534s IPR 13 100.00% -10.84 4.99 J: intensity 534s SIGIPR 13 100.00% 0.41 3.05 Q: standard deviation 534s FRACTIONCALC 13 100.00% 0.07 1.15 R: real 534s XDET 13 100.00% 1099.43 1215.80 R: real 534s YDET 13 100.00% 1110.92 1201.06 R: real 534s ROT 13 100.00% 15.33 41.55 R: real 534s WIDTH 13 100.00% 0.37 2.19 R: real 534s LP 13 100.00% 0.00 0.03 R: real 534s MPART 13 100.00% 0.00 303.00 I: integer 534s FLAG 13 100.00% 0.00 40.00 I: integer 534s BGPKRATIOS 13 100.00% 8.04 10610.05 R: real 534s Crystal 2: 534s Name: DEFAULT 534s Project: AUTOMATIC 534s Id: 2 534s Unit cell: (78.0043, 78.0043, 78.0043, 90, 90, 90) 534s Number of datasets: 1 534s Dataset 1: 534s Name: NATIVE_SWEEP1 534s Id: 1 534s Wavelength: 0.979 534s Number of columns: 0 534s asu: (1, 2, 1) orig: (-1, 1, -2) M/ISYM: 15 534s asu: (1, 2, 1) orig: (1, -1, 2) M/ISYM: 272 534s asu: (1, 2, 1) orig: (1, -1, 2) M/ISYM: 272 534s asu: (1, 2, 1) orig: (-1, 2, 1) M/ISYM: 6 534s asu: (1, 2, 1) orig: (1, -2, -1) M/ISYM: 261 534s asu: (1, 2, 1) orig: (-1, 2, -1) M/ISYM: 263 534s asu: (1, 2, 1) orig: (1, -2, -1) M/ISYM: 261 534s asu: (1, 2, 1) orig: (-1, 2, -1) M/ISYM: 263 534s asu: (1, 2, 1) orig: (1, -2, 1) M/ISYM: 264 534s asu: (1, 2, 1) orig: (1, -2, 1) M/ISYM: 264 534s asu: (0, 2, 0) orig: (0, 0, -2) M/ISYM: 266 534s asu: (0, 2, 0) orig: (0, 0, -2) M/ISYM: 266 534s asu: (0, 2, 0) orig: (0, 0, -2) M/ISYM: 266 536s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 536s 139 536s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 536s libtbx.python "/usr/lib/python3/dist-packages/iotbx/mtz/tst_dano.py" [FAIL] 4.8s 536s Time: 4.77 536s Return code: 139 536s OKs: 0 536s Standard error: 536s Segmentation fault (core dumped) 536s libtbx.python "/usr/lib/python3/dist-packages/iotbx/examples/tst_mtz_free_flipper.py" [OK] 0.2s 536s Time: 0.19 536s Return code: 0 536s OKs: 0 536s Standard out: 536s Skipping exercise(): input file not available 536s u+s,u,s: 0.16 0.14 0.02 539s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 539s 139 539s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 539s libtbx.python "/usr/lib/python3/dist-packages/iotbx/mtz/tst.py" P31 [FAIL] 4.5s 539s Time: 4.46 539s Return code: 139 539s OKs: 0 539s Standard error: 539s Segmentation fault (core dumped) 539s libtbx.python "/usr/lib/python3/dist-packages/iotbx/detectors/tst_adsc.py" [OK] 0.1s 539s Time: 0.14 539s Return code: 0 539s OKs: 1 539s Standard out: 539s Skipping exercise_adscread(): input file not available 539s OK 539s libtbx.python "/usr/lib/python3/dist-packages/iotbx/detectors/tst_detectors.py" [OK] 0.0s 539s Time: 0.05 539s Return code: 0 539s OKs: 0 539s Standard out: 539s bpcx_regression not configured, skipping test 541s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 541s 139 541s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 541s libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_reflection_file_utils.py" [FAIL] 5.2s 541s Time: 5.16 541s Return code: 139 541s OKs: 0 541s Standard error: 541s Segmentation fault (core dumped) 544s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 544s 139 544s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 544s libtbx.python "/usr/lib/python3/dist-packages/iotbx/xplor/tst_xplormap.py" [FAIL] 5.0s 544s Time: 5.02 544s Return code: 139 544s OKs: 0 544s Standard error: 544s Segmentation fault (core dumped) 544s libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_pdbx_mmcif_tutorial.py" [OK] 0.0s 544s Time: 0.05 544s Return code: 0 544s OKs: 1 544s Standard out: 544s phenix_regression not configured, skipping tst_pdbx_mmcif_tutorial.py 544s OK 546s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 546s 139 546s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 546s libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_phases.py" P31 [FAIL] 4.8s 546s Time: 4.82 546s Return code: 139 546s OKs: 0 546s Standard error: 546s Segmentation fault (core dumped) 550s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 550s 1 550s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 550s libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_lattice_symmetry.py" [FAIL] 6.3s 550s Standard error: 550s Traceback (most recent call last): 550s File "/usr/lib/python3/dist-packages/iotbx/regression/tst_lattice_symmetry.py", line 477, in 550s exercise(sys.argv[1:]) 550s ~~~~~~~~^^^^^^^^^^^^^^ 550s File "/usr/lib/python3/dist-packages/iotbx/regression/tst_lattice_symmetry.py", line 22, in exercise 550s run_and_compare( 550s ~~~~~~~~~~~~~~~^ 550s ['iotbx.lattice_symmetry' 550s ^^^^^^^^^^^^^^^^^^^^^^^^^ 550s ...<31 lines>... 550s 550s 550s """) 550s ^^^^ 550s File "/usr/lib/python3/dist-packages/iotbx/regression/tst_lattice_symmetry.py", line 17, in run_and_compare 550s command=command).raise_if_errors().stdout_lines 550s ~~~~~~~~~~~~~~~^^ 550s File "/usr/lib/python3/dist-packages/libtbx/easy_run.py", line 46, in raise_if_errors 550s raise Error(msg) 550s RuntimeError: child process stderr output: 550s command: 'iotbx.lattice_symmetry --unit_cell="12.7923,12.8923,29.4356,102.846,103.846,22.7475"' 550s Segmentation fault (core dumped) 550s Time: 6.30 550s Return code: 1 550s OKs: 0 550s libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_data_plots.py" [OK] 0.1s 550s Time: 0.05 550s Return code: 0 550s OKs: 1 550s Standard out: 550s OK 550s libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_csv_utils.py" [OK] 0.1s 550s Time: 0.12 550s Return code: 0 550s OKs: 1 550s Standard out: 550s OK 552s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 552s 139 552s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 552s libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_reflection_statistics.py" Fdd2 P31m [FAIL] 5.4s 552s Time: 5.37 552s Return code: 139 552s OKs: 0 552s Standard error: 552s Segmentation fault (core dumped) 552s libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_bioinformatics.py" [OK] 0.1s 552s Time: 0.08 552s Return code: 0 552s OKs: 3 552s Standard out: 552s Testing guess_chain_types ... OK 552s Testing merge_sequences ... OK 552s testEquality (__main__.test_sequence.testEquality) ... ok 552s testNonEquality (__main__.test_sequence.testNonEquality) ... ok 552s testFormat (__main__.test_fasta_sequence.testFormat) ... ok 552s testStr (__main__.test_fasta_sequence.testStr) ... ok 552s testFormat (__main__.test_pir_sequence.testFormat) ... ok 552s testStr (__main__.test_pir_sequence.testStr) ... ok 552s testConservationCode (__main__.test_midline.testConservationCode) ... ok 552s testMidline (__main__.test_midline.testMidline) ... ok 552s test__str__ (__main__.test_alignment.test__str__) ... ok 552s test_copy (__main__.test_alignment.test_copy) ... ok 552s test_error (__main__.test_alignment.test_error) ... ok 552s test_extend (__main__.test_alignment.test_extend) ... ok 552s test_identity_count (__main__.test_alignment.test_identity_count) ... ok 552s test_identity_fraction (__main__.test_alignment.test_identity_fraction) ... ok 552s test_length (__main__.test_alignment.test_length) ... ok 552s test_multiplicity (__main__.test_alignment.test_multiplicity) ... ok 552s test__str__ (__main__.test_fasta_alignment.test__str__) ... ok 552s test_copy (__main__.test_fasta_alignment.test_copy) ... ok 552s test_error (__main__.test_fasta_alignment.test_error) ... ok 552s test_format (__main__.test_fasta_alignment.test_format) ... ok 552s test__str__ (__main__.test_pir_alignment.test__str__) ... ok 552s test_copy (__main__.test_pir_alignment.test_copy) ... ok 552s test_error (__main__.test_pir_alignment.test_error) ... ok 552s test_format (__main__.test_pir_alignment.test_format) ... ok 552s test__str__ (__main__.test_clustal_alignment.test__str__) ... ok 552s test_copy (__main__.test_clustal_alignment.test_copy) ... ok 552s test_format (__main__.test_clustal_alignment.test_format) ... ok 552s testFasta (__main__.test_sequence_parse.testFasta) ... ok 552s testPir (__main__.test_sequence_parse.testPir) ... ok 552s testSequence (__main__.test_sequence_parse.testSequence) ... ok 552s testTolerantPir (__main__.test_sequence_parse.testTolerantPir) ... ok 552s test_dbfetch_parse (__main__.test_sequence_parse.test_dbfetch_parse) ... ok 552s test_filename_selection (__main__.test_sequence_parse.test_filename_selection) ... ok 552s test_known_formats (__main__.test_sequence_parse.test_known_formats) ... ok 552s test_ls_parse (__main__.test_sequence_parse.test_ls_parse) ... ok 552s test_tf_parse (__main__.test_sequence_parse.test_tf_parse) ... ok 552s testAli (__main__.test_alignment_parse.testAli) ... ok 552s testClustal (__main__.test_alignment_parse.testClustal) ... ok 552s testFasta (__main__.test_alignment_parse.testFasta) ... ok 552s testPir (__main__.test_alignment_parse.testPir) ... ok 552s test_filename_selection (__main__.test_alignment_parse.test_filename_selection) ... ok 552s test_known_formats (__main__.test_alignment_parse.test_known_formats) ... ok 552s test_process_header (__main__.test_hhsearch_parser.test_process_header) ... ok 552s test_process_hits (__main__.test_hhsearch_parser.test_process_hits) ... ok 552s test_process_header (__main__.test_hhalign_parser.test_process_header) ... ok 552s test_process_hits (__main__.test_hhalign_parser.test_process_hits) ... ok 552s 552s ---------------------------------------------------------------------- 552s Ran 46 tests in 0.004s 552s 552s OK 554s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 554s 139 554s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 554s libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_file_reader.py" [FAIL] 3.9s 554s Time: 3.85 554s Return code: 139 554s OKs: 0 554s Standard error: 554s Segmentation fault (core dumped) 559s Standard error: 559s *** buffer overflow detected ***: terminated 559s Aborted (core dumped) 559s Traceback (most recent call last): 559s File "/usr/lib/python3/dist-packages/iotbx/regression/tst_box_around_molecule.py", line 138, in 559s exercise() 559s ~~~~~~~~^^ 559s File "/usr/lib/python3/dist-packages/iotbx/regression/tst_box_around_molecule.py", line 48, in exercise 559s assert not easy_run.call("iotbx.pdb.box_around_molecule %s.pdb" % ( 559s ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 559s prefix)) 559s ^^^^^^^^ 559s AssertionError 559s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 559s 1 559s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 559s libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_box_around_molecule.py" [FAIL] 7.1s 559s Time: 7.13 559s Return code: 1 559s OKs: 0 559s Standard out: 559s Starting iotbx.pdb.box_around_molecule 559s on Thu Mar 13 12:34:58 2025 by ubuntu 559s =============================================================================== 559s 559s libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_mmcif_input.py" [OK] 0.2s 559s Time: 0.18 559s Return code: 0 559s OKs: 0 560s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 560s 134 560s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 560s libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_mmcif_segids.py" [FAIL] 5.9s 560s Time: 5.86 560s Return code: 134 560s OKs: 0 560s Standard error: 560s *** buffer overflow detected ***: terminated 560s Aborted (core dumped) 560s libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_mmcif_multimodel.py" [OK] 0.5s 560s Time: 0.47 560s Return code: 0 560s OKs: 0 560s Standard out: 560s ['_MutableMapping__marker', '__abstractmethods__', '__class__', '__class_getitem__', '__contains__', '__copy__', '__deepcopy__', '__delattr__', '__delitem__', '__dict__', '__dir__', '__doc__', '__eq__', '__firstlineno__', '__format__', '__ge__', '__getattribute__', '__getitem__', '__getstate__', '__gt__', '__hash__', '__init__', '__init_subclass__', '__iter__', '__le__', '__len__', '__lt__', '__module__', '__ne__', '__new__', '__reduce__', '__reduce_ex__', '__repr__', '__reversed__', '__setattr__', '__setitem__', '__sizeof__', '__slots__', '__static_attributes__', '__str__', '__subclasshook__', '__weakref__', '_abc_impl', '_items', '_set', 'add_data_item', 'add_loop', 'clear', 'copy', 'deepcopy', 'difference', 'get', 'get_loop', 'get_loop_or_row', 'get_loop_with_defaults', 'get_looped_item', 'get_single_item', 'item_keys', 'items', 'iterloops', 'keys', 'keys_lower', 'loop_keys', 'loops', 'pop', 'popitem', 'saves', 'setdefault', 'show', 'sort', 'update', 'validate', 'values'] 560s ['_atom_site.group_PDB', '_atom_site.id', '_atom_site.label_atom_id', '_atom_site.label_alt_id', '_atom_site.label_comp_id', '_atom_site.auth_asym_id', '_atom_site.auth_seq_id', '_atom_site.pdbx_PDB_ins_code', '_atom_site.Cartn_x', '_atom_site.Cartn_y', '_atom_site.Cartn_z', '_atom_site.occupancy', '_atom_site.B_iso_or_equiv', '_atom_site.type_symbol', '_atom_site.pdbx_formal_charge', '_atom_site.label_asym_id', '_atom_site.label_entity_id', '_atom_site.label_seq_id', '_atom_site.pdbx_PDB_model_num', '_chem_comp.id', '_struct_asym.id'] 561s libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_add_conformations.py" [OK] 0.2s 561s Time: 0.18 561s Return code: 0 561s OKs: 0 561s Standard out: 561s phenix_regression not available, skipping test. 562s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 562s 134 562s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 562s libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_hierarchy_forward_compatible_pdb.py" [FAIL] 3.5s 562s Time: 3.51 562s Return code: 134 562s OKs: 0 562s Standard error: 562s *** buffer overflow detected ***: terminated 562s Aborted (core dumped) 563s libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_reindex.py" [OK] 0.1s 563s Time: 0.05 563s Return code: 0 563s OKs: 1 563s Standard out: 563s Skipping 563s OK 565s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 565s 139 565s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 565s libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_symmetry.py" [FAIL] 4.1s 565s Time: 4.05 565s Return code: 139 565s OKs: 0 565s Standard error: 565s Segmentation fault (core dumped) 567s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 567s 139 567s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 567s libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_reflection_file_editor.py" [FAIL] 4.6s 567s Time: 4.62 567s Return code: 139 567s OKs: 0 567s Standard error: 567s Segmentation fault (core dumped) 567s libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_pdb_as_fasta.py" [OK] 0.2s 567s Time: 0.20 567s Return code: 0 567s OKs: 1 567s Standard out: 567s OK 568s libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_pdb_link_records.py" [OK] 0.2s 568s Time: 0.21 568s Return code: 0 568s OKs: 0 568s Standard out: 568s Can not initialize monomer_library, skipping test. 568s libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_merging_statistics.py" [OK] 0.1s 568s Time: 0.13 568s Return code: 0 568s OKs: 1 568s Standard out: 568s phenix_regression not configured, skipping. 568s OK 571s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 571s 1 571s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 571s libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_split_models.py" [FAIL] 6.2s 571s Time: 6.17 571s Return code: 1 571s OKs: 0 571s Standard error: 571s Traceback (most recent call last): 571s File "/usr/lib/python3/dist-packages/iotbx/regression/tst_split_models.py", line 60, in 571s exercise() 571s ~~~~~~~~^^ 571s File "/usr/lib/python3/dist-packages/iotbx/regression/tst_split_models.py", line 48, in exercise 571s assert (len(out.stdout_lines) == 2) and (len(out.stderr_lines) == 0) 571s ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 571s AssertionError 572s Standard error: 572s Segmentation fault (core dumped) 572s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 572s 139 572s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 572s libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_simple_map_coefficients.py" [FAIL] 4.3s 572s Time: 4.29 572s Return code: 139 572s OKs: 0 572s libtbx.python "/usr/lib/python3/dist-packages/iotbx/xds/tests/tst_xparm.py" [OK] 0.1s 572s Time: 0.07 572s Return code: 0 572s OKs: 3 572s Standard out: 572s OK 572s OK 572s OK 572s libtbx.python "/usr/lib/python3/dist-packages/iotbx/xds/tests/tst_xds_inp.py" [OK] 0.1s 572s Time: 0.06 572s Return code: 0 572s OKs: 1 572s Standard out: 572s OK 577s Standard error: 577s Segmentation fault (core dumped) 577s Traceback (most recent call last): 577s File "/usr/lib/python3/dist-packages/iotbx/regression/tst_sort_atoms.py", line 815, in 577s exercise_1() 577s ~~~~~~~~~~^^ 577s File "/usr/lib/python3/dist-packages/iotbx/regression/tst_sort_atoms.py", line 806, in exercise_1 577s assert not easy_run.call(cmd) 577s ^^^^^^^^^^^^^^^^^^^^^^ 577s AssertionError 577s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 577s 1 577s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 577s libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_sort_atoms.py" [FAIL] 5.7s 577s Time: 5.68 577s Return code: 1 577s OKs: 0 577s Standard out: 577s iotbx.pdb.sort_atoms tst_sort_atoms_1.pdb 577s libtbx.python "/usr/lib/python3/dist-packages/iotbx/xds/tests/tst_spots_xds.py" [OK] 0.1s 577s Time: 0.05 577s Return code: 0 577s OKs: 1 577s Standard out: 577s OK 577s libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_pdb_as_cif.py" [OK] 0.3s 577s Time: 0.29 577s Return code: 0 577s OKs: 1 577s Standard out: 577s Can not initialize monomer_library, skipping tst_pdb_as_cif. 577s OK 578s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 578s 139 578s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 578s libtbx.python "/usr/lib/python3/dist-packages/iotbx/xds/tests/tst_integrate_hkl.py" [FAIL] 5.9s 578s Time: 5.89 578s Return code: 139 578s OKs: 0 578s Standard error: 578s Segmentation fault (core dumped) 580s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 580s 139 580s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 580s libtbx.python "/usr/lib/python3/dist-packages/iotbx/scalepack/tst_no_merge_original_index.py" [FAIL] 3.4s 580s Time: 3.38 580s Return code: 139 580s OKs: 0 580s Standard error: 580s Segmentation fault (core dumped) 583s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 583s 139 583s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 583s libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_export_scalepack_unmerged.py" [FAIL] 5.0s 583s Time: 4.97 583s Return code: 139 583s OKs: 0 583s Standard error: 583s Segmentation fault (core dumped) 583s libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/ncs/tst_mtrix_biomt_cmdl.py" [OK] 0.2s 583s Time: 0.19 583s Return code: 0 583s OKs: 0 583s Standard out: 583s Skipping tests: phenix not found 584s libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/ncs/tst_mmcif_biomt_reduction_output.py" [OK] 0.5s 584s Time: 0.49 584s Return code: 0 584s OKs: 0 584s Standard out: 584s chem_data is not available, skipping 585s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 585s 139 585s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 585s libtbx.python "/usr/lib/python3/dist-packages/iotbx/dsn6/tst.py" P31 [FAIL] 5.1s 585s Time: 5.10 585s Return code: 139 585s OKs: 0 585s Standard error: 585s Segmentation fault (core dumped) 588s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 588s 139 588s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 588s libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/ncs/tst_ncs_search_ligs.py" [FAIL] 4.3s 588s Time: 4.32 588s Return code: 139 588s OKs: 0 588s Standard error: 588s Segmentation fault (core dumped) 591s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 591s 139 591s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 591s libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/ncs/tst_ncs_search_broken_chain.py" [FAIL] 5.2s 591s Time: 5.22 591s Return code: 139 591s OKs: 0 591s Standard error: 591s Segmentation fault (core dumped) 593s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 593s 139 593s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 593s libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/ncs/tst_ncs_search_shortcut_1.py" [FAIL] 5.2s 593s Time: 5.22 593s Return code: 139 593s OKs: 0 593s Standard error: 593s Segmentation fault (core dumped) 597s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 597s 139 597s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 597s libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/ncs/tst_ncs_groups_preprocessing.py" [FAIL] 6.1s 597s Time: 6.10 597s Return code: 139 597s OKs: 0 597s Standard error: 597s Segmentation fault (core dumped) 599s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 599s 139 599s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 599s libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/ncs/tst_ncs_input.py" [FAIL] 6.1s 599s Time: 6.14 599s Return code: 139 599s OKs: 0 599s Standard error: 599s Segmentation fault (core dumped) 602s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 602s 139 602s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 602s libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/ncs/tst_ncs_user_selections.py" [FAIL] 5.3s 602s Time: 5.30 602s Return code: 139 602s OKs: 0 602s Standard error: 602s Segmentation fault (core dumped) 605s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 605s 139 605s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 605s libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/ncs/tst_ncs.py" [FAIL] 6.1s 605s Time: 6.13 605s Return code: 139 605s OKs: 0 605s Standard error: 605s Segmentation fault (core dumped) 608s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 608s 139 608s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 608s libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/ncs/tst_ncs_without_validation.py" [FAIL] 6.1s 608s Time: 6.06 608s Return code: 139 608s OKs: 0 608s Standard error: 608s Segmentation fault (core dumped) 611s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 611s 139 611s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 611s libtbx.python "/usr/lib/python3/dist-packages/iotbx/pdb/tst_read_mtrix_records_from_cif.py" [FAIL] 5.9s 611s Time: 5.95 611s Return code: 139 611s OKs: 0 611s Standard error: 611s Segmentation fault (core dumped) 614s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 614s 139 614s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 614s libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_show_systematic_absences.py" [FAIL] 6.0s 614s Time: 6.02 614s Return code: 139 614s OKs: 0 614s Standard error: 614s Segmentation fault (core dumped) 614s libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_reflection_file_reader.py" [OK] 0.3s 614s Time: 0.26 614s Return code: 0 614s OKs: 1 614s Standard out: 614s OK 616s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 616s 139 616s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 616s libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_miller_sort_asu.py" [FAIL] 5.0s 616s Time: 5.00 616s Return code: 139 616s OKs: 0 616s Standard error: 616s Segmentation fault (core dumped) 616s libtbx.python "/usr/lib/python3/dist-packages/iotbx/bioinformatics/test/tst_alignment_as_hsearch.py" [OK] 0.1s 616s Time: 0.08 616s Return code: 0 616s OKs: 0 617s libtbx.python "/usr/lib/python3/dist-packages/iotbx/bioinformatics/test/tst_ebi_wu_blast_xml.py" [OK] 0.1s 617s Time: 0.08 617s Return code: 0 617s OKs: 0 617s libtbx.python "/usr/lib/python3/dist-packages/iotbx/bioinformatics/test/tst_ncbi_blast_xml.py" [OK] 0.1s 617s Time: 0.08 617s Return code: 0 617s OKs: 0 617s libtbx.python "/usr/lib/python3/dist-packages/iotbx/bioinformatics/pdb_info.py" [OK] 0.8s 617s Time: 0.76 617s Return code: 0 617s OKs: 0 620s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 620s 134 620s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 620s libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_xray_scale.py" [FAIL] 5.4s 620s Time: 5.44 620s Return code: 134 620s OKs: 0 620s Standard error: 620s *** buffer overflow detected ***: terminated 620s Aborted (core dumped) 623s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 623s 139 623s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 623s libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_cif_as_pdb_1atom.py" [FAIL] 5.7s 623s Time: 5.70 623s Return code: 139 623s OKs: 0 623s Standard error: 623s Segmentation fault (core dumped) 626s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 626s 139 626s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 626s libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_cif_1.py" [FAIL] 6.7s 626s Time: 6.68 626s Return code: 139 626s OKs: 0 626s Standard error: 626s Segmentation fault (core dumped) 631s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 631s 1 631s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 631s libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_split_data_cif.py" [FAIL] 8.0s 631s Time: 8.03 631s Return code: 1 631s OKs: 0 631s Standard error: 631s Traceback (most recent call last): 631s File "/usr/lib/python3/dist-packages/iotbx/regression/tst_split_data_cif.py", line 395, in 631s tst_1() 631s ~~~~~^^ 631s File "/usr/lib/python3/dist-packages/iotbx/regression/tst_split_data_cif.py", line 370, in tst_1 631s assert os.path.isfile('%s.cif_%s_000.mtz' % (prefix, bn)) 631s ~~~~~~~~~~~~~~^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 631s AssertionError 633s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 633s 134 633s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 633s libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_all_chain_ids.py" [FAIL] 6.8s 633s Time: 6.80 633s Return code: 134 633s OKs: 0 633s Standard error: 633s *** buffer overflow detected ***: terminated 633s Aborted (core dumped) 636s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 636s 139 636s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 636s libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_extract_xtal_data.py" [FAIL] 4.8s 636s Time: 4.85 636s Return code: 139 636s OKs: 0 636s Standard error: 636s Segmentation fault (core dumped) 636s libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_mtz_as_cif.py" [OK] 0.3s 636s Time: 0.27 636s Return code: 0 636s OKs: 1 636s Standard out: 636s Skipping 1akg.mtz test: input file not available 636s Skipping 1zff.mtz test: input file not available 636s Skipping l.mtz test: input file not available 636s Skipping outside_4_exptl_fobs_phases_freeR_flags.mtz test: input file not available 636s Skipping r1wqzsf.mtz test: input file not available 636s Skipping ur0013.sf.mtz test: input file not available 636s Skipping 1aba_test.mtz test: input file not available 636s OK 636s libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_group_rounding.py" [OK] 0.2s 636s Time: 0.18 636s Return code: 0 636s OKs: 0 640s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 640s 139 640s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 640s libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_cli_parser.py" [FAIL] 6.3s 640s Time: 6.30 640s Return code: 139 640s OKs: 0 640s Standard error: 640s Segmentation fault (core dumped) 640s libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_hierarchy_merge_atoms_at_end_to_residues.py" [OK] 0.2s 640s Time: 0.19 640s Return code: 0 640s OKs: 1 640s Standard out: 640s [('1', 22), ('3', 17), ('1', 1), ('3', 1)] 640s [('1', 22), ('3', 18), ('1', 1)] 640s OK 641s libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_hierarchy_long_chain_ids_1.py" [OK] 0.8s 641s Time: 0.83 641s Return code: 0 641s OKs: 1 641s Standard out: 641s 641s total number of: 641s models: 1 641s chains: 3 641s alt. conf.: 0 641s residues: 12 641s atoms: 174 641s anisou: 0 641s number of atom element+charge types: 4 641s histogram of atom element+charge frequency: 641s " H " 78 641s " C " 60 641s " O " 21 641s " N " 15 641s residue name classes: 641s "common_amino_acid" 12 641s number of chain ids: 3 641s histogram of chain id frequency: 641s "A" 1 641s "A-2" 1 641s "A-5" 1 641s number of alt. conf. ids: 0 641s number of residue names: 4 641s histogram of residue name frequency: 641s "ASN" 3 641s "PHE" 3 641s "SER" 3 641s "THR" 3 641s Can not initialize monomer_library, skipping test. 641s OK. Time: 0.344 641s libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_hierarchy_long_resname_1.py" [OK] 0.5s 641s Time: 0.49 641s Return code: 0 641s OKs: 1 641s Standard out: 641s OK. Time: 0.312 642s libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_hierarchy_long_resname_2.py" [OK] 0.5s 642s Time: 0.50 642s Return code: 0 642s OKs: 1 642s Standard out: 642s Can not initialize monomer_library, skipping test. 642s OK. Time: 0.011 642s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 642s 134 642s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 642s libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_hierarchy_occupancies_rounding.py" [FAIL] 5.5s 642s Standard error: 642s *** buffer overflow detected ***: terminated 642s Aborted (core dumped) 642s Time: 5.55 642s Return code: 134 642s OKs: 0 642s libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_hierarchy_long_resname_3.py" [OK] 0.5s 642s Time: 0.49 642s Return code: 0 642s OKs: 1 642s Standard out: 642s Can not initialize monomer_library, skipping test. 642s OK. Time: 0.012 642s libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_hierarchy_copy_select.py" [OK] 0.2s 642s Time: 0.20 642s Return code: 0 642s OKs: 1 642s Standard out: 642s There is no info: pdb=" N " 642s And no parent: None 642s Info is gone: pdb=" N " 642s Info is still here: pdb=" N GLY A 1 " 642s OK. Time: 0.022 642s libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_hierarchy_id_str.py" [OK] 0.2s 642s Time: 0.18 642s Return code: 0 642s OKs: 0 642s Standard out: 642s u+s,u,s: 0.15 0.14 0.01 643s libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_hierarchy_long_resname_4.py" [OK] 0.5s 643s Time: 0.50 643s Return code: 0 643s OKs: 1 643s Standard out: 643s Can not initialize monomer_library, skipping test. 643s OK. Time: 0.011 643s libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_hierarchy_altlocs.py" [OK] 0.2s 643s Time: 0.18 643s Return code: 0 643s OKs: 1 643s Standard out: 643s OK 645s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 645s 139 645s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 645s libtbx.python "/usr/lib/python3/dist-packages/iotbx/detectors/tst_debug_write.py" [FAIL] 2.2s 645s Time: 2.24 645s Return code: 139 645s OKs: 0 645s Standard error: 645s Segmentation fault (core dumped) 648s Standard error: 648s Segmentation fault (core dumped) 648s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 648s 139 648s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 648s libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/ncs/tst_ncs_reordered_chains.py" [EXPECTED FAIL] 2.9s 648s Time: 2.88 648s Return code: 139 648s OKs: 0 651s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 651s 134 651s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 651s libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_mmcif_to_from_hierarchy.py" [EXPECTED FAIL] 3.3s 651s Time: 3.35 651s Return code: 134 651s OKs: 0 651s Standard error: 651s *** buffer overflow detected ***: terminated 651s Aborted (core dumped) 651s libtbx.python "/usr/lib/python3/dist-packages/libtbx/metric_prefixes.py" [OK] 0.0s 651s Time: 0.02 651s Return code: 0 651s OKs: 1 651s Standard out: 651s OK 655s libtbx.python "/usr/lib/python3/dist-packages/libtbx/tst_utils.py" [OK] 4.2s 655s Time: 4.19 655s Return code: 0 655s OKs: 0 655s Standard out: 655s Skipping exercise_retrieve_unless_exists 655s ### USER = ubuntu 655s ### PID = 10456 655s multiprocessing problem: None 655s base36_timestamp(): 00m87c2d4n now 655s base36_timestamp(): zzydazd000 year 115855 CE 655s get_svn_revision(): None 655s get_build_tag(): None 655s u+s,u,s: 0.06 0.06 0.00 656s libtbx.python "/usr/lib/python3/dist-packages/libtbx/test_utils/__init__.py" [OK] 0.5s 656s Time: 0.49 656s Return code: 0 656s OKs: 1 656s Standard out: 656s OK 656s libtbx.python "/usr/lib/python3/dist-packages/libtbx/queuing_system_utils/pbs_utils.py" [OK] 0.0s 656s Time: 0.02 656s Return code: 0 656s OKs: 1 656s Standard out: 656s *** MY_PBS_ARRAY_SIZE = None 656s *** MY_PBS_ARRAYID_OFFSET = None 656s *** PBS_ARRAYID = None 656s *** OMPI_MCA_ns_nds_num_procs = None 656s *** OMPI_MCA_ns_nds_vpid = None 656s n,i: 1 0 656s OK 656s libtbx.python "/usr/lib/python3/dist-packages/libtbx/queuing_system_utils/sge_utils.py" [OK] 0.0s 656s Time: 0.02 656s Return code: 0 656s OKs: 1 656s Standard out: 656s *** JOB_ID = None 656s *** SGE_ARCH = None 656s *** SGE_TASK_FIRST = None 656s *** SGE_TASK_LAST = None 656s *** SGE_TASK_ID = None 656s OK 656s libtbx.python "/usr/lib/python3/dist-packages/libtbx/introspection.py" [OK] 0.0s 656s Time: 0.04 656s Return code: 0 656s OKs: 1 656s Standard out: 656s number of processors: 2 656s Virtual memory size: 21,385,216 656s Resident set size: 12,681,216 656s Stack size: 139,264 656s Virtual memory size: 21,512,192 exact max: 29,515,776 656s Resident set size: 13,090,816 approx. max: 21,000,192 656s Stack size: 139,264 approx. max: 139,264 656s Memory total: 4,190,973,952 656s Memory free: 64,999,424 656s OK 680s libtbx.python "/usr/lib/python3/dist-packages/libtbx/tst_thread_utils.py" [OK] 24.1s 680s Time: 24.07 680s Return code: 0 680s OKs: 1 680s Standard out: 680s OK 682s libtbx.python "/usr/lib/python3/dist-packages/libtbx/tst_easy_mp.py" [OK] 1.7s 682s Time: 1.69 682s Return code: 0 682s OKs: 1 682s Standard out: 682s multiprocessing pool size: 2 682s wall clock time: 0.00 seconds 682s OK 683s libtbx.python "/usr/lib/python3/dist-packages/libtbx/tst_easy_mp_state.py" [OK] 1.0s 683s Time: 1.01 683s Return code: 0 683s OKs: 3 683s Standard out: 683s Running threading test with 1 processes, 1 threads, 3 tasks 683s (0x3ffb2aaaba0-11654) object in state -init- 683s (0x3ffb2aaaba0-11654) changing state from -init- to MN8950 683s (0x3ffb2aaaba0-11654) changing state from MN8950 to KH59G6 683s (0x3ffb2aaaba0-11654) changing state from KH59G6 to UN633U 683s (0x3ffb2aaaba0-11654) object in state UN633U 683s OK 683s Running threading test with 2 processes, 1 threads, 3 tasks 683s (0x3ffb2989d10-11654) object in state -init- 683s (0x3ffb2989d10-11654) changing state from -init- to 6MQEC3 683s (0x3ffb2989d10-11654) changing state from 6MQEC3 to FHMUBW 683s (0x3ffb2989d10-11654) changing state from FHMUBW to 18ST6X 683s (0x3ffb2989d10-11654) object in state 18ST6X 683s OK 683s Running multiprocessing test with 1 processes, 1 threads, 3 tasks 683s (0x3ffb2989d10-11654) object in state -init- 683s (0x3ffb2989d10-11654) changing state from -init- to GVDAHT 683s (0x3ffb2989d10-11654) changing state from GVDAHT to EWI7LP 683s (0x3ffb2989d10-11654) changing state from EWI7LP to OZJEX2 683s (0x3ffb2989d10-11654) object in state OZJEX2 683s OK 683s libtbx.python "/usr/lib/python3/dist-packages/libtbx/tst_easy_pickle.py" [OK] 0.0s 683s Time: 0.05 683s Return code: 0 683s OKs: 1 683s Standard out: 683s test.dat 683s dump: 0.00 s 683s load buffered: 0.00 s 683s load direct: 0.00 s 683s test.dat.gz 683s dump: 0.00 s 683s load buffered: 0.00 s 683s load direct: 0.00 s 683s dumps/loads 683s dump: 0.00 s 683s load buffered: 0.00 s 683s OK 683s libtbx.python "/usr/lib/python3/dist-packages/libtbx/tst_fully_buffered_timeout.py" [OK] 0.1s 683s Time: 0.05 683s Return code: 0 683s OKs: 0 683s Standard out: 683s Skipping test: probe not configured 689s libtbx.python "/usr/lib/python3/dist-packages/libtbx/tst_scheduling.py" [OK] 6.1s 689s Time: 6.15 689s Return code: 0 689s OKs: 0 690s libtbx.python "/usr/lib/python3/dist-packages/libtbx/easy_run.py" [OK] 1.3s 690s Time: 1.33 690s Return code: 0 690s OKs: 1 690s Standard out: 690s OK 690s libtbx.python "/usr/lib/python3/dist-packages/libtbx/tst_containers.py" [OK] 0.0s 690s Time: 0.02 690s Return code: 0 690s OKs: 1 690s Standard out: 690s OK 690s libtbx.python "/usr/lib/python3/dist-packages/libtbx/tst_path.py" [OK] 0.0s 690s Time: 0.04 690s Return code: 0 690s OKs: 1 690s Standard out: 690s OK 691s libtbx.python "/usr/lib/python3/dist-packages/libtbx/tst_math_utils.py" [OK] 0.2s 691s Time: 0.24 691s Return code: 0 691s OKs: 1 691s Standard out: 691s OK 691s libtbx.python "/usr/lib/python3/dist-packages/libtbx/assert_utils.py" [OK] 0.1s 691s Time: 0.09 691s Return code: 0 691s OKs: 1 691s Standard out: 691s OK 691s libtbx.python "/usr/lib/python3/dist-packages/libtbx/tst_str_utils.py" [OK] 0.2s 691s Time: 0.21 691s Return code: 0 691s OKs: 1 691s Standard out: 691s OK 691s libtbx.python "/usr/lib/python3/dist-packages/libtbx/table_utils.py" [OK] 0.0s 691s Time: 0.03 691s Return code: 0 691s OKs: 1 691s Standard out: 691s OK 693s libtbx.python "/usr/lib/python3/dist-packages/libtbx/tst_dlite.py" [OK] 2.0s 693s Time: 2.04 693s Return code: 0 693s OKs: 1 693s Standard out: 693s OK 693s libtbx.python "/usr/lib/python3/dist-packages/libtbx/phil/tst_tokenizer.py" [OK] 0.0s 693s Time: 0.04 693s Return code: 0 693s OKs: 1 693s Standard out: 693s OK 693s libtbx.python "/usr/lib/python3/dist-packages/libtbx/phil/tst.py" [OK] 0.2s 693s Time: 0.20 693s Return code: 0 693s OKs: 1 693s Standard out: 693s OK 693s libtbx.python "/usr/lib/python3/dist-packages/libtbx/phil/tst_experimental.py" [OK] 0.0s 693s Time: 0.04 693s Return code: 0 693s OKs: 1 693s Standard out: 693s OK 693s libtbx.python "/usr/lib/python3/dist-packages/libtbx/phil/tst_interface.py" [OK] 0.1s 693s Time: 0.07 693s Return code: 0 693s OKs: 1 693s Standard out: 693s phenix module not available: skipping advanced tests 693s phaser module not available: skipping advanced tests 693s OK 693s libtbx.python "/usr/lib/python3/dist-packages/libtbx/tst_object_oriented_patterns.py" [OK] 0.1s 693s Time: 0.05 693s Return code: 0 693s OKs: 0 693s libtbx.python "/usr/lib/python3/dist-packages/libtbx/find_reference_cycles.py" [OK] 0.0s 693s Time: 0.03 693s Return code: 0 693s OKs: 1 693s Standard out: 693s OK 693s libtbx.python "/usr/lib/python3/dist-packages/libtbx/tst_binary_search.py" [OK] 0.0s 693s Time: 0.02 693s Return code: 0 693s OKs: 1 693s Standard out: 693s OK 693s libtbx.python "/usr/lib/python3/dist-packages/libtbx/tst_topological_sort.py" [OK] 0.0s 693s Time: 0.02 693s Return code: 0 693s OKs: 1 693s Standard out: 693s OK 693s libtbx.python "/usr/lib/python3/dist-packages/libtbx/clusterTests.py" [OK] 0.1s 693s Time: 0.13 693s Return code: 0 693s OKs: 1 693s Standard out: 693s ---------------------------------------------------------------------- 693s Ran 13 tests in 0.085s 693s 693s OK 694s libtbx.python "/usr/lib/python3/dist-packages/libtbx/tst_citations.py" [OK] 0.1s 694s Time: 0.13 694s Return code: 0 694s OKs: 1 694s Standard out: 694s OK 694s libtbx.python "/usr/lib/python3/dist-packages/libtbx/tst_python_code_parsing.py" [OK] 0.0s 694s Time: 0.03 694s Return code: 0 694s OKs: 1 694s Standard out: 694s OK 694s libtbx.python "/usr/lib/python3/dist-packages/libtbx/tst_representation.py" [OK] 0.0s 694s Time: 0.02 694s Return code: 0 694s OKs: 0 694s Standard out: 694s 99999999999999950039963891867 694s 99999999999999963917751699682 694s 99999999999999977795539507496 694s 99999999999999991673327315311 694s 100000000000000005551115123125 694s 100000000000000019428902930940 694s 100000000000000033306690738754 694s 100000000000000047184478546569 694s 100000000000000061062266354383 694s 100000000000000074940054162198 694s 100000000000000088817841970012 694s 100000000000000102695629777826 694s 100000000000000116573417585641 694s 100000000000000130451205393455 694s 100000000000000144328993201270 694s 100000000000000158206781009084 694s 100000000000000172084568816899 694s 100000000000000185962356624713 694s 100000000000000199840144432528 694s 100000000000000213717932240342 694s 100000000000000227595720048157 694s 100000000000000241473507855971 694s 100000000000000255351295663786 694s 100000000000000269229083471600 694s 100000000000000283106871279414 694s 100000000000000296984659087229 694s 100000000000000310862446895043 694s 100000000000000324740234702858 694s 100000000000000338618022510672 694s 100000000000000352495810318487 694s BEst 450359962737049.6 694s 900719925474099.2 694s 55.32192809488736 694s 56.32192809488736 694s True 694s libtbx.python "/usr/lib/python3/dist-packages/libtbx/tst_find_unused_imports.py" [OK] 0.0s 694s Time: 0.02 694s Return code: 0 694s OKs: 1 694s Standard out: 694s OK 694s libtbx.python "/usr/lib/python3/dist-packages/libtbx/tst_program_template.py" [OK] 0.2s 694s Time: 0.21 694s Return code: 0 694s OKs: 0 694s libtbx.python "/usr/lib/python3/dist-packages/libtbx/tst_version.py" [OK] 0.0s 694s Time: 0.04 694s Return code: 0 694s OKs: 0 694s libtbx.python "/usr/lib/python3/dist-packages/libtbx/tst_easy_mp_multicore.py" [OK] 0.3s 694s Time: 0.27 694s Return code: 0 694s OKs: 0 694s Standard out: 694s [1] 1 694s [2] 2 694s [3] 6 694s [4] 24 694s [5] 120 694s [6] 720 694s [7] 5040 700s libtbx.python "/usr/lib/python3/dist-packages/libtbx/tst_runtime_utils.py" [OK] 5.9s 700s Time: 5.91 700s Return code: 0 700s OKs: 1 700s Standard out: 700s OK 701s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 701s 1 701s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 701s libtbx.python "/usr/lib/python3/dist-packages/libtbx/tst_xmlrpc_utils.py" [EXPECTED FAIL] 1.3s 701s Time: 1.29 701s Return code: 1 701s OKs: 0 701s Standard error: 701s Traceback (most recent call last): 701s File "/usr/lib/python3/dist-packages/libtbx/tst_xmlrpc_utils.py", line 42, in 701s exercise() 701s ~~~~~~~~^^ 701s File "/usr/lib/python3/dist-packages/libtbx/tst_xmlrpc_utils.py", line 15, in exercise 701s server = xmlrpc_utils.external_program_server(command=full_cmd, 701s program_id="TEST", 701s timeout=None, 701s cache_requests=True, 701s log=log) 701s TypeError: external_program_server.__init__() got an unexpected keyword argument 'command' 704s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 704s 139 704s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 704s libtbx.python "/usr/lib/python3/dist-packages/scitbx/tests/tst_smoothing.py" [FAIL] 2.3s 704s Time: 2.31 704s Return code: 139 704s OKs: 0 704s Standard error: 704s Segmentation fault (core dumped) 706s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 706s 139 706s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 706s libtbx.python "/usr/lib/python3/dist-packages/scitbx/tests/tst_genetic_algorithm_with_mp.py" [FAIL] 2.2s 706s Time: 2.21 706s Return code: 139 706s OKs: 0 706s Standard error: 706s Segmentation fault (core dumped) 708s Standard error: 708s Segmentation fault (core dumped) 708s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 708s 139 708s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 708s libtbx.python "/usr/lib/python3/dist-packages/scitbx/tests/tst_basic.py" [FAIL] 2.5s 708s Time: 2.48 708s Return code: 139 708s OKs: 1 708s Standard out: 708s b'\n\xc3\x85 LATIN CAPITAL LETTER A WITH RING ABOVE\n\xc2\xb0 DEGREE SIGN\n\xce\x91 GREEK CAPITAL LETTER ALPHA\n\xce\x92 GREEK CAPITAL LETTER BETA\n\xce\x93 GREEK CAPITAL LETTER GAMMA = gamma function\n\xce\x94 GREEK CAPITAL LETTER DELTA\n\xce\x95 GREEK CAPITAL LETTER EPSILON\n\xce\x96 GREEK CAPITAL LETTER ZETA\n\xce\x97 GREEK CAPITAL LETTER ETA\n\xce\x98 GREEK CAPITAL LETTER THETA\n\xce\x99 GREEK CAPITAL LETTER IOTA = iota adscript\n\xce\x9a GREEK CAPITAL LETTER KAPPA\n\xce\x9b GREEK CAPITAL LETTER LAMDA\n\xce\x9c GREEK CAPITAL LETTER MU\n\xce\x9d GREEK CAPITAL LETTER NU\n\xce\x9e GREEK CAPITAL LETTER XI\n\xce\x9f GREEK CAPITAL LETTER OMICRON\n\xce\xa0 GREEK CAPITAL LETTER PI\n\xce\xa1 GREEK CAPITAL LETTER RHO\n\xce\xa3 GREEK CAPITAL LETTER SIGMA\n\xce\xa4 GREEK CAPITAL LETTER TAU\n\xce\xa5 GREEK CAPITAL LETTER UPSILON\n\xce\xa6 GREEK CAPITAL LETTER PHI\n\xce\xa7 GREEK CAPITAL LETTER CHI\n\xce\xa8 GREEK CAPITAL LETTER PSI\n\xce\xa9 GREEK CAPITAL LETTER OMEGA\n\xcf\x86 GREEK SMALL LETTER PHI\n\xcf\x87 GREEK SMALL LETTER CHI\n\xcf\x88 GREEK SMALL LETTER PSI\n\xcf\x89 GREEK SMALL LETTER OMEGA\n\xce\xb2 greek small letter beta\n\xce\xb8 greek small letter theta\n\xce\xa5 greek capital letter upsilon\n\xcf\x86 greek small letter phi\n\xcf\x80 greek small letter pi\n\xce\xb2 GREEK SMALL LETTER BETA\n\xc3\x9f latin small letter sharp s\n\xce\xb3 GREEK SMALL LETTER GAMMA\n\xce\xb4 GREEK SMALL LETTER DELTA\n\xce\xb5 GREEK SMALL LETTER EPSILON\n\xce\xb6 GREEK SMALL LETTER ZETA\n\xce\xb7 GREEK SMALL LETTER ETA\n\xce\xb8 GREEK SMALL LETTER THETA\n\xce\xb9 GREEK SMALL LETTER IOTA\n\xce\xba GREEK SMALL LETTER KAPPA\n\xce\xbb GREEK SMALL LETTER LAMDA = lambda\n\xce\xbc GREEK SMALL LETTER MU\n\xc2\xb5 micro sign\n\xce\xbd GREEK SMALL LETTER NU\n\xce\xbe GREEK SMALL LETTER XI\n\xce\xbf GREEK SMALL LETTER OMICRON\n\xcf\x80 GREEK SMALL LETTER PI math constant 3.141592...\n\xcf\x81 GREEK SMALL LETTER RHO\n\xcf\x82 GREEK SMALL LETTER FINAL SIGMA\n\xcf\x83 GREEK SMALL LETTER SIGMA\n\xcf\x84 GREEK SMALL LETTER TAU\n\xcf\x85 GREEK SMALL LETTER UPSILON\n' 708s Size of an empty container. 708s Some of those containers store a pointer to a raw storage: 708s the 'cumulative' entry refers to the total memory footprint 708s whereas the other entry does not include the raw storage. 708s 708s int : 4 708s af::ref : 32 708s scitbx::auto_array : 8 708s boost::shared_array : 16 708s boost::ptr_vector : 24 708s std::vector : 24 708s af::shared : 16 708s af::shared [cumulative] : 64 708s std::valarray : 16 708s af::versa : 24 708s af::versa > : 280 708s af::versa > [cumulative] : 328 708s 708s double : 8 708s af::ref : 32 708s scitbx::auto_array : 8 708s boost::shared_array : 16 708s boost::ptr_vector : 24 708s std::vector : 24 708s af::shared : 16 708s af::shared [cumulative] : 64 708s std::valarray : 16 708s af::versa : 24 708s af::versa > : 280 708s af::versa > [cumulative] : 328 708s 708s OK 708s "/usr/lib/cctbx/python3.13/scitbx/array_family/tst_af_1" [OK] 0.0s 708s Time: 0.00 708s Return code: 0 708s OKs: 1 708s Standard out: 708s Total OK: 511 708s "/usr/lib/cctbx/python3.13/scitbx/array_family/tst_af_2" [OK] 0.0s 708s Time: 0.00 708s Return code: 0 708s OKs: 1 708s Standard out: 708s Total OK: 268 708s "/usr/lib/cctbx/python3.13/scitbx/array_family/tst_af_3" [OK] 0.0s 708s Time: 0.00 708s Return code: 0 708s OKs: 1 708s Standard out: 708s Total OK: 164 708s "/usr/lib/cctbx/python3.13/scitbx/array_family/tst_af_4" [OK] 0.0s 708s Time: 0.00 708s Return code: 0 708s OKs: 1 708s Standard out: 708s Total OK: 1420 708s "/usr/lib/cctbx/python3.13/scitbx/array_family/tst_af_5" [OK] 0.0s 708s Time: 0.00 708s Return code: 0 708s OKs: 1 708s Standard out: 708s Total OK: 23 708s "/usr/lib/cctbx/python3.13/scitbx/array_family/tst_vec3" [OK] 0.0s 708s Time: 0.00 708s Return code: 0 708s OKs: 1 708s Standard out: 708s Total OK: 83 708s "/usr/lib/cctbx/python3.13/scitbx/array_family/tst_unsigned_float_arithmetic" [OK] 0.0s 708s Time: 0.00 708s Return code: 0 708s OKs: 1 708s Standard out: 708s OK 708s "/usr/lib/cctbx/python3.13/scitbx/array_family/tst_mat3" [OK] 0.0s 708s Time: 0.00 708s Return code: 0 708s OKs: 1 708s Standard out: 708s Total OK: 129 708s "/usr/lib/cctbx/python3.13/scitbx/array_family/tst_sym_mat3" [OK] 0.0s 708s Time: 0.00 708s Return code: 0 708s OKs: 1 708s Standard out: 708s Total OK: 91 708s "/usr/lib/cctbx/python3.13/scitbx/array_family/tst_ref_matrix_facet" [OK] 0.0s 708s Time: 0.00 708s Return code: 0 708s OKs: 1 708s Standard out: 708s OK 708s "/usr/lib/cctbx/python3.13/scitbx/array_family/tst_accessors" [OK] 0.0s 708s Time: 0.00 708s Return code: 0 708s OKs: 1 708s Standard out: 708s Total OK: 1730 708s "/usr/lib/cctbx/python3.13/scitbx/array_family/tst_optional_copy" [OK] 0.0s 708s Time: 0.00 708s Return code: 0 708s OKs: 1 708s Standard out: 708s OK 708s "/usr/lib/cctbx/python3.13/scitbx/array_family/tst_rectangular_full_packed" [OK] 0.0s 708s Time: 0.00 708s Return code: 0 708s OKs: 0 708s Standard out: 708s Test of accessor for rectangular full packed format skipped 709s libtbx.python "/usr/lib/python3/dist-packages/scitbx/array_family/boost_python/tst_flex_argument_passing.py" [OK] 0.1s 709s Time: 0.09 709s Return code: 0 709s OKs: 1 709s Standard out: 709s OK 709s "/usr/lib/cctbx/python3.13/scitbx/serialization/tst_base_256" [OK] 0.3s 709s Time: 0.30 709s Return code: 0 709s OKs: 1 709s Standard out: 709s OK 711s libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_fetch.py" [OK] 68.5s 711s Time: 68.51 711s Return code: 0 711s OKs: 1 711s Standard out: 711s data_r1yjpsf 711s # 711s loop_ 711s _audit.revision_id 711s _audit.creation_date 711s _audit.update_record 711s 1_0 2005-06-14 'Initial release' 711s 1_1 2013-05-08 'Status correction and format standardization' 711s # 711s _cell.entry_id 1yjp 711s _cell.length_a 21.937 711s _cell.length_b 4.866 711s _cell.length_c 23.477 711s _cell.angle_alpha 90.000 711s _cell.angle_beta 107.080 711s _cell.angle_gamma 90.000 711s # 711s _diffrn_radiation_wavelength.id 1 711s _diffrn_radiation_wavelength.wavelength 0.97500 711s # 711s _entry.id 1yjp 711s # 711s _exptl_crystal.id 1 711s # 711s _reflns_scale.group_code 1 711s # 711s _symmetry.entry_id 1yjp 711s _symmetry.space_group_name_H-M 'P 1 21 1' 711s # 711s # 711s loop_ 711s _refln.crystal_id 711s _refln.wavelength_id 711s _refln.scale_group_code 711s _refln.index_h 711s _refln.index_k 711s _refln.index_l 711s _refln.status 711s _refln.F_meas_au 711s _refln.F_meas_sigma_au 711s 1 1 1 -12 0 2 o 3.49 2.34 711s 1 1 1 -12 0 3 o 3.31 2.43 711s 1 1 1 -12 0 4 o 7.32 4.25 711s 1 1 1 -12 0 5 o 8.88 5.39 711s 1 1 1 -11 0 1 o 9.46 4.13 711s 1 1 1 -11 0 2 o 4.91 3.21 711s 1 1 1 -11 0 3 o 6.37 3.70 711s 1 1 1 -11 0 4 o 8.50 4.91 711s 1 1 1 -11 0 5 o 17.44 8.06 711s 1 1 1 -11 0 6 o 5.89 3.64 711s 1 1 1 -11 0 8 o 6.39 3.90 711s 1 1 1 -11 1 2 o 5.69 2.18 711s 1 1 1 -11 1 3 o 6.53 2.53 711s 1 1 1 -11 1 5 o 7.26 3.20 711s 1 1 1 -11 1 6 o 11.05 3.47 711s 1 1 1 -10 0 2 o 6.32 3.74 711s 1 1 1 -10 0 3 o 9.36 4.67 711s 1 1 1 -10 0 5 o 7.20 4.12 711s 1 1 1 -10 0 6 o 4.88 3.25 711s 1 1 1 -10 0 7 o 11.84 5.41 711s 1 1 1 -10 0 8 o 14.49 6.53 711s 1 1 1 -10 0 9 o 6.21 3.91 711s 1 1 1 -10 0 10 o 5.55 3.37 711s 1 1 1 -10 1 1 o 4.58 1.49 711s 1 1 1 -10 1 3 o 12.40 3.65 711s 1 1 1 -10 1 4 o 9.07 2.47 711s 1 1 1 -10 1 5 o 17.23 6.02 711s 1 1 1 -10 1 6 o 4.60 2.10 711s 1 1 1 -10 1 7 o 6.34 2.43 711s 1 1 1 -10 1 8 o 9.04 2.92 711s 1 1 1 -9 0 2 o 8.10 3.98 711s 1 1 1 -9 0 3 o 14.22 5.11 711s 1 1 1 -9 0 5 o 6.01 3.78 711s 1 1 1 -9 0 6 o 10.48 4.68 711s 1 1 1 -9 0 7 o 8.79 4.52 711s 1 1 1 -9 0 8 o 6.15 3.63 711s 1 1 1 -9 0 9 o 10.27 4.16 711s 1 1 1 -9 0 10 o 4.38 3.04 711s 1 1 1 -9 0 11 o 7.27 4.16 711s 1 1 1 -9 1 3 o 10.75 2.38 711s 1 1 1 -9 1 4 o 11.86 1.95 711s 1 1 1 -9 1 5 o 10.95 3.27 711s 1 1 1 -9 1 6 o 13.31 2.59 711s 1 1 1 -9 1 7 o 8.06 2.92 711s 1 1 1 -9 1 8 o 14.75 2.87 711s 1 1 1 -9 1 9 o 9.04 2.82 711s 1 1 1 -8 0 2 f 15.88 3.97 711s 1 1 1 -8 0 3 o 26.78 5.79 711s 1 1 1 -8 0 5 o 32.83 7.52 711s 1 1 1 -8 0 7 o 12.74 3.54 711s 1 1 1 -8 0 8 o 29.46 9.29 711s 1 1 1 -8 0 9 f 22.09 3.59 711s 1 1 1 -8 0 10 o 18.81 5.24 711s 1 1 1 -8 0 11 o 12.76 7.11 711s 1 1 1 -8 1 1 o 6.26 2.08 711s 1 1 1 -8 1 2 o 6.97 2.14 711s 1 1 1 -8 1 4 o 19.24 4.18 711s 1 1 1 -8 1 5 o 15.46 2.43 711s 1 1 1 -8 1 6 o 16.87 2.78 711s 1 1 1 -8 1 7 o 15.66 2.34 711s 1 1 1 -8 1 8 o 7.07 2.43 711s 1 1 1 -8 1 9 o 8.81 2.80 711s 1 1 1 -8 1 10 o 8.61 3.09 711s 1 1 1 -8 2 1 o 4.39 1.52 711s 1 1 1 -8 2 2 o 4.20 1.87 711s 1 1 1 -8 2 3 o 6.14 1.87 711s 1 1 1 -8 2 4 o 9.38 2.80 711s 1 1 1 -7 0 3 o 23.46 3.83 711s 1 1 1 -7 0 4 o 37.35 7.40 711s 1 1 1 -7 0 6 o 7.44 3.60 711s 1 1 1 -7 0 7 o 43.94 5.36 711s 1 1 1 -7 0 8 o 18.96 2.98 711s 1 1 1 -7 0 9 o 4.95 3.22 711s 1 1 1 -7 0 10 o 31.73 4.61 711s 1 1 1 -7 0 11 o 6.31 3.82 711s 1 1 1 -7 0 12 o 5.05 3.33 711s 1 1 1 -7 1 1 o 8.89 1.60 711s 1 1 1 -7 1 2 o 13.70 1.71 711s 1 1 1 -7 1 3 o 21.03 2.45 711s 1 1 1 -7 1 4 f 7.57 2.36 711s 1 1 1 -7 1 5 o 11.31 3.34 711s 1 1 1 -7 1 6 o 19.93 3.06 711s 1 1 1 -7 1 7 o 22.86 3.28 711s 1 1 1 -7 1 8 o 10.32 2.58 711s 1 1 1 -7 1 9 f 5.13 2.34 711s 1 1 1 -7 1 10 o 9.91 3.03 711s 1 1 1 -7 1 11 o 5.61 2.33 711s 1 1 1 -7 2 1 o 12.28 3.86 711s 1 1 1 -7 2 2 o 11.29 3.50 711s 1 1 1 -7 2 3 f 7.22 2.40 711s 1 1 1 -7 2 4 o 11.13 2.74 711s 1 1 1 -7 2 5 o 7.86 2.92 711s 1 1 1 -7 2 6 o 5.23 2.15 711s 1 1 1 -6 0 2 o 35.03 5.13 711s 1 1 1 -6 0 3 o 15.64 3.61 711s 1 1 1 -6 0 4 o 12.60 4.22 711s 1 1 1 -6 0 5 o 21.36 2.47 711s 1 1 1 -6 0 6 o 31.19 3.17 711s 1 1 1 -6 0 7 o 33.66 3.99 711s 1 1 1 -6 0 8 o 13.70 4.22 711s 1 1 1 -6 0 9 o 10.99 4.16 711s 1 1 1 -6 0 10 o 24.56 3.98 711s 1 1 1 -6 0 11 o 4.41 3.08 711s 1 1 1 -6 0 12 o 4.07 2.83 711s 1 1 1 -6 1 1 o 10.24 1.40 711s 1 1 1 -6 1 2 o 20.59 2.28 711s 1 1 1 -6 1 3 o 32.14 3.57 711s 1 1 1 -6 1 4 f 11.60 2.18 711s 1 1 1 -6 1 5 o 22.15 2.66 711s 1 1 1 -6 1 6 o 7.68 2.64 711s 1 1 1 -6 1 7 o 6.39 2.58 711s 1 1 1 -6 1 8 o 6.60 2.60 711s 1 1 1 -6 1 9 o 8.21 2.82 711s 1 1 1 -6 1 10 o 13.25 3.07 711s 1 1 1 -6 1 11 o 10.62 3.80 711s 1 1 1 -6 2 1 o 13.78 2.98 711s 1 1 1 -6 2 2 o 5.95 2.11 711s 1 1 1 -6 2 3 o 8.96 3.00 711s 1 1 1 -6 2 4 o 4.88 2.17 711s 1 1 1 -6 2 5 o 7.35 2.58 711s 1 1 1 -6 2 6 o 6.93 2.91 711s 1 1 1 -6 2 7 o 8.14 2.74 711s 1 1 1 -5 0 2 o 44.04 6.46 711s 1 1 1 -5 0 3 o 15.30 3.69 711s 1 1 1 -5 0 4 o 16.95 2.51 711s 1 1 1 -5 0 5 o 14.82 4.54 711s 1 1 1 -5 0 6 o 29.73 3.15 711s 1 1 1 -5 0 7 f 55.71 13.43 711s 1 1 1 -5 0 8 o 15.06 3.67 711s 1 1 1 -5 0 9 o 8.76 4.15 711s 1 1 1 -5 0 10 o 4.69 3.13 711s 1 1 1 -5 0 11 o 16.56 5.19 711s 1 1 1 -5 0 12 o 5.59 3.77 711s 1 1 1 -5 1 1 o 26.70 2.49 711s 1 1 1 -5 1 2 o 38.67 3.63 711s 1 1 1 -5 1 3 o 20.45 2.09 711s 1 1 1 -5 1 4 o 6.46 2.54 711s 1 1 1 -5 1 5 o 20.55 2.58 711s 1 1 1 -5 1 6 o 28.68 2.67 711s 1 1 1 -5 1 7 o 5.68 2.48 711s 1 1 1 -5 1 8 o 6.99 2.70 711s 1 1 1 -5 1 9 o 20.74 2.59 711s 1 1 1 -5 1 10 o 14.70 3.00 711s 1 1 1 -5 1 11 o 8.62 2.89 711s 1 1 1 -5 2 1 o 6.26 2.16 711s 1 1 1 -5 2 2 o 7.93 2.10 711s 1 1 1 -5 2 3 o 19.90 4.18 711s 1 1 1 -5 2 4 o 4.98 2.02 711s 1 1 1 -5 2 5 o 16.85 3.60 711s 1 1 1 -5 2 7 o 8.15 2.74 711s 1 1 1 -5 2 8 o 8.89 2.75 711s 1 1 1 -4 0 2 o 4.55 2.74 711s 1 1 1 -4 0 3 o 23.50 2.52 711s 1 1 1 -4 0 4 o 19.15 3.81 711s 1 1 1 -4 0 7 o 20.06 2.98 711s 1 1 1 -4 0 8 o 28.85 3.55 711s 1 1 1 -4 0 9 o 5.36 3.45 711s 1 1 1 -4 0 10 o 25.68 3.87 711s 1 1 1 -4 0 11 o 23.28 3.81 711s 1 1 1 -4 0 12 o 11.39 4.82 711s 1 1 1 -4 0 13 o 7.07 3.96 711s 1 1 1 -4 1 1 o 31.99 4.35 711s 1 1 1 -4 1 2 o 18.48 1.94 711s 1 1 1 -4 1 3 f 18.93 2.01 711s 1 1 1 -4 1 4 o 38.05 3.65 711s 1 1 1 -4 1 5 o 36.34 3.49 711s 1 1 1 -4 1 6 o 18.08 3.24 711s 1 1 1 -4 1 7 o 20.11 2.29 711s 1 1 1 -4 1 8 o 11.25 2.61 711s 1 1 1 -4 1 9 o 27.09 3.02 711s 1 1 1 -4 1 10 o 17.78 3.55 711s 1 1 1 -4 1 11 o 10.45 3.55 711s 1 1 1 -4 1 12 o 7.42 2.61 711s 1 1 1 -4 2 1 o 7.72 2.01 711s 1 1 1 -4 2 2 o 30.88 3.36 711s 1 1 1 -4 2 3 o 19.14 2.65 711s 1 1 1 -4 2 4 o 4.44 2.00 711s 1 1 1 -4 2 5 f 26.44 8.10 711s 1 1 1 -4 2 6 o 10.83 3.21 711s 1 1 1 -4 2 7 o 6.03 2.73 711s 1 1 1 -4 2 8 o 12.78 2.87 711s 1 1 1 -3 0 2 o 3.40 2.13 711s 1 1 1 -3 0 3 o 5.40 2.78 711s 1 1 1 -3 0 4 o 11.52 2.39 711s 1 1 1 -3 0 5 o 55.13 5.36 711s 1 1 1 -3 0 6 f 31.55 3.22 711s 1 1 1 -3 0 7 o 6.95 4.11 711s 1 1 1 -3 0 8 o 6.00 3.79 711s 1 1 1 -3 0 9 o 23.03 3.41 711s 1 1 1 -3 0 10 o 4.79 3.36 711s 1 1 1 -3 0 11 o 10.46 5.21 711s 1 1 1 -3 0 12 o 11.53 6.07 711s 1 1 1 -3 0 13 o 3.22 2.15 711s 1 1 1 -3 1 1 o 53.95 5.22 711s 1 1 1 -3 1 2 o 21.50 3.03 711s 1 1 1 -3 1 3 o 42.88 4.08 711s 1 1 1 -3 1 4 o 42.70 6.13 711s 1 1 1 -3 1 5 o 41.12 3.18 711s 1 1 1 -3 1 6 o 17.31 2.67 711s 1 1 1 -3 1 7 o 35.59 4.21 711s 1 1 1 -3 1 8 o 18.53 2.36 711s 1 1 1 -3 1 9 o 11.55 2.71 711s 1 1 1 -3 1 10 o 11.41 2.79 711s 1 1 1 -3 1 11 o 6.92 2.69 711s 1 1 1 -3 1 12 o 7.03 2.45 711s 1 1 1 -3 2 1 o 18.65 2.01 711s 1 1 1 -3 2 2 o 16.33 1.93 711s 1 1 1 -3 2 3 o 32.88 5.01 711s 1 1 1 -3 2 4 o 9.99 2.93 711s 1 1 1 -3 2 5 o 20.62 2.93 711s 1 1 1 -3 2 6 o 9.18 3.06 711s 1 1 1 -3 2 7 o 6.90 2.83 711s 1 1 1 -3 2 8 o 5.26 2.23 711s 1 1 1 -2 0 1 o 37.92 5.29 711s 1 1 1 -2 0 2 o 25.98 3.53 711s 1 1 1 -2 0 3 o 20.20 2.27 711s 1 1 1 -2 0 4 o 43.74 4.27 711s 1 1 1 -2 0 5 o 32.34 3.28 711s 1 1 1 -2 0 6 o 61.28 6.06 711s 1 1 1 -2 0 7 o 39.92 3.91 711s 1 1 1 -2 0 8 o 5.73 3.51 711s 1 1 1 -2 0 9 o 34.44 8.22 711s 1 1 1 -2 0 10 o 5.00 3.24 711s 1 1 1 -2 0 11 o 5.95 3.63 711s 1 1 1 -2 0 12 o 7.57 4.58 711s 1 1 1 -2 1 1 o 5.64 1.74 711s 1 1 1 -2 1 2 o 27.80 2.66 711s 1 1 1 -2 1 3 f 58.08 5.70 711s 1 1 1 -2 1 4 o 17.13 2.16 711s 1 1 1 -2 1 5 o 17.82 1.84 711s 1 1 1 -2 1 6 o 38.29 4.36 711s 1 1 1 -2 1 7 o 21.32 2.41 711s 1 1 1 -2 1 8 o 14.24 2.30 711s 1 1 1 -2 1 9 o 23.48 2.71 711s 1 1 1 -2 1 10 f 12.02 2.17 711s 1 1 1 -2 1 11 o 15.91 5.89 711s 1 1 1 -2 1 12 o 7.00 2.53 711s 1 1 1 -2 2 1 o 15.73 2.27 711s 1 1 1 -2 2 2 o 24.74 2.59 711s 1 1 1 -2 2 3 o 16.53 2.59 711s 1 1 1 -2 2 4 o 6.46 2.78 711s 1 1 1 -2 2 5 o 13.27 4.40 711s 1 1 1 -2 2 6 o 5.58 2.29 711s 1 1 1 -2 2 7 o 6.76 2.38 711s 1 1 1 -2 2 8 o 5.29 2.14 711s 1 1 1 -1 0 1 o 28.12 3.79 711s 1 1 1 -1 0 2 o 21.59 2.21 711s 1 1 1 -1 0 3 o 33.14 3.24 711s 1 1 1 -1 0 4 o 43.39 4.18 711s 1 1 1 -1 0 5 f 46.52 4.56 711s 1 1 1 -1 0 6 o 76.28 14.50 711s 1 1 1 -1 0 7 o 5.12 3.18 711s 1 1 1 -1 0 9 o 37.08 8.90 711s 1 1 1 -1 0 10 o 6.65 3.72 711s 1 1 1 -1 0 11 o 6.86 4.45 711s 1 1 1 -1 0 12 o 4.18 2.86 711s 1 1 1 -1 1 1 o 36.99 3.46 711s 1 1 1 -1 1 2 o 40.11 3.76 711s 1 1 1 -1 1 3 o 15.12 3.05 711s 1 1 1 -1 1 4 o 11.44 2.42 711s 1 1 1 -1 1 5 f 7.66 2.37 711s 1 1 1 -1 1 6 o 37.21 3.40 711s 1 1 1 -1 1 7 o 13.99 2.19 711s 1 1 1 -1 1 8 o 23.42 2.40 711s 1 1 1 -1 1 9 o 12.59 2.48 711s 1 1 1 -1 1 10 o 14.84 2.83 711s 1 1 1 -1 1 11 o 13.90 3.02 711s 1 1 1 -1 2 1 o 7.71 2.59 711s 1 1 1 -1 2 2 o 5.95 2.09 711s 1 1 1 -1 2 3 o 25.96 3.59 711s 1 1 1 -1 2 4 o 16.53 2.52 711s 1 1 1 -1 2 5 o 12.51 2.97 711s 1 1 1 -1 2 6 o 12.40 3.34 711s 1 1 1 -1 2 7 o 5.97 2.01 711s 1 1 1 -1 2 8 o 8.24 2.40 711s 1 1 1 0 0 1 o 40.04 3.82 711s 1 1 1 0 0 2 o 58.22 5.69 711s 1 1 1 0 0 3 o 47.47 4.60 711s 1 1 1 0 0 4 o 7.98 2.75 711s 1 1 1 0 0 5 o 50.74 7.60 711s 1 1 1 0 0 6 o 14.87 1.94 711s 1 1 1 0 0 7 o 3.62 2.41 711s 1 1 1 0 0 8 o 36.19 7.98 711s 1 1 1 0 0 9 o 10.11 5.01 711s 1 1 1 0 0 10 o 18.08 3.24 711s 1 1 1 0 0 11 o 12.35 4.26 711s 1 1 1 0 0 12 o 9.41 4.38 711s 1 1 1 0 1 1 o 92.10 11.26 711s 1 1 1 0 1 2 o 47.48 4.50 711s 1 1 1 0 1 3 o 22.08 2.22 711s 1 1 1 0 1 4 o 8.62 2.51 711s 1 1 1 0 1 5 o 24.16 1.98 711s 1 1 1 0 1 6 o 16.72 1.95 711s 1 1 1 0 1 7 o 5.50 2.46 711s 1 1 1 0 1 8 o 21.06 2.19 711s 1 1 1 0 1 9 o 5.99 2.45 711s 1 1 1 0 1 10 o 8.62 3.03 711s 1 1 1 0 1 11 o 9.15 3.06 711s 1 1 1 0 2 0 o 27.82 5.58 711s 1 1 1 0 2 1 o 29.68 4.10 711s 1 1 1 0 2 2 o 37.82 4.30 711s 1 1 1 0 2 3 o 14.42 1.91 711s 1 1 1 0 2 4 o 13.55 2.70 711s 1 1 1 0 2 5 o 8.67 3.07 711s 1 1 1 0 2 6 o 22.77 5.53 711s 1 1 1 0 2 7 o 5.74 2.12 711s 1 1 1 0 2 8 o 9.78 2.64 711s 1 1 1 1 0 1 o 10.19 1.09 711s 1 1 1 1 0 2 o 20.07 1.88 711s 1 1 1 1 0 3 o 28.76 2.81 711s 1 1 1 1 0 4 o 3.16 2.18 711s 1 1 1 1 0 5 o 35.75 3.54 711s 1 1 1 1 0 6 f 52.32 5.12 711s 1 1 1 1 0 7 o 37.09 5.54 711s 1 1 1 1 0 8 o 6.52 3.32 711s 1 1 1 1 0 9 o 3.67 2.45 711s 1 1 1 1 0 10 o 6.03 3.17 711s 1 1 1 1 0 11 o 3.13 2.20 711s 1 1 1 1 0 12 o 4.06 2.74 711s 1 1 1 1 1 0 o 34.97 2.64 711s 1 1 1 1 1 1 o 15.45 1.46 711s 1 1 1 1 1 2 o 27.96 2.66 711s 1 1 1 1 1 3 o 55.14 5.35 711s 1 1 1 1 1 4 o 14.46 1.65 711s 1 1 1 1 1 5 o 7.23 2.19 711s 1 1 1 1 1 6 o 10.31 2.54 711s 1 1 1 1 1 7 o 11.70 2.22 711s 1 1 1 1 1 8 o 11.24 2.14 711s 1 1 1 1 1 9 o 7.60 2.88 711s 1 1 1 1 1 10 o 8.83 2.34 711s 1 1 1 1 1 11 o 12.55 3.17 711s 1 1 1 1 2 0 o 24.36 5.60 711s 1 1 1 1 2 1 o 13.12 2.09 711s 1 1 1 1 2 2 o 10.37 2.52 711s 1 1 1 1 2 3 o 14.39 1.98 711s 1 1 1 1 2 4 o 26.67 8.23 711s 1 1 1 1 2 5 o 22.53 5.20 711s 1 1 1 1 2 6 o 13.94 2.61 711s 1 1 1 1 2 7 o 7.45 2.38 711s 1 1 1 1 2 8 o 4.51 2.05 711s 1 1 1 2 0 1 o 13.06 1.30 711s 1 1 1 2 0 2 o 10.37 1.36 711s 1 1 1 2 0 3 o 20.89 2.04 711s 1 1 1 2 0 4 o 45.12 4.31 711s 1 1 1 2 0 5 o 15.37 1.91 711s 1 1 1 2 0 6 o 28.38 2.79 711s 1 1 1 2 0 7 o 16.02 2.31 711s 1 1 1 2 0 8 o 3.40 2.35 711s 1 1 1 2 0 9 o 4.23 2.72 711s 1 1 1 2 0 10 o 3.89 2.43 711s 1 1 1 2 0 11 o 10.26 3.01 711s 1 1 1 2 1 0 o 34.61 2.64 711s 1 1 1 2 1 1 o 53.93 5.22 711s 1 1 1 2 1 2 o 20.62 2.08 711s 1 1 1 2 1 3 o 44.45 3.37 711s 1 1 1 2 1 4 o 24.41 2.00 711s 1 1 1 2 1 5 o 40.33 4.58 711s 1 1 1 2 1 6 o 41.76 5.03 711s 1 1 1 2 1 7 o 28.20 3.43 711s 1 1 1 2 1 8 o 33.56 3.76 711s 1 1 1 2 1 9 o 4.41 1.97 711s 1 1 1 2 1 10 o 15.24 3.10 711s 1 1 1 2 2 0 o 25.09 3.38 711s 1 1 1 2 2 1 o 9.96 2.30 711s 1 1 1 2 2 2 o 15.79 2.28 711s 1 1 1 2 2 3 f 23.73 2.57 711s 1 1 1 2 2 4 o 31.55 3.47 711s 1 1 1 2 2 5 o 22.42 5.53 711s 1 1 1 2 2 6 o 21.84 3.98 711s 1 1 1 2 2 7 o 11.92 3.24 711s 1 1 1 3 0 1 o 20.22 2.60 711s 1 1 1 3 0 2 o 15.58 1.67 711s 1 1 1 3 0 3 o 43.75 4.24 711s 1 1 1 3 0 4 o 53.24 5.13 711s 1 1 1 3 0 5 o 9.04 2.60 711s 1 1 1 3 0 6 o 16.05 2.16 711s 1 1 1 3 0 7 o 10.18 3.61 711s 1 1 1 3 0 8 f 21.57 2.93 711s 1 1 1 3 0 9 o 5.10 2.75 711s 1 1 1 3 0 10 o 9.06 4.48 711s 1 1 1 3 0 11 o 7.20 4.29 711s 1 1 1 3 1 0 o 6.01 1.35 711s 1 1 1 3 1 1 o 38.17 5.32 711s 1 1 1 3 1 2 o 88.61 10.65 711s 1 1 1 3 1 3 o 46.76 4.49 711s 1 1 1 3 1 4 o 21.38 1.98 711s 1 1 1 3 1 5 o 10.82 1.68 711s 1 1 1 3 1 6 o 9.92 1.96 711s 1 1 1 3 1 7 o 13.79 1.74 711s 1 1 1 3 1 8 o 18.26 2.25 711s 1 1 1 3 1 9 o 10.74 2.36 711s 1 1 1 3 1 10 o 4.53 1.95 711s 1 1 1 3 2 0 o 36.54 6.90 711s 1 1 1 3 2 1 o 7.87 2.79 711s 1 1 1 3 2 2 o 18.30 2.61 711s 1 1 1 3 2 3 o 17.39 2.45 711s 1 1 1 3 2 4 o 17.18 2.74 711s 1 1 1 3 2 5 o 13.02 2.60 711s 1 1 1 3 2 6 o 4.72 1.98 711s 1 1 1 4 0 1 o 3.64 2.08 711s 1 1 1 4 0 2 o 63.80 6.24 711s 1 1 1 4 0 3 o 19.19 1.93 711s 1 1 1 4 0 4 o 63.44 6.28 711s 1 1 1 4 0 5 o 30.78 6.03 711s 1 1 1 4 0 6 o 9.03 2.53 711s 1 1 1 4 0 7 o 18.16 2.40 711s 1 1 1 4 0 8 o 8.94 3.14 711s 1 1 1 4 0 9 o 6.87 3.36 711s 1 1 1 4 0 10 o 9.58 4.40 711s 1 1 1 4 1 0 o 24.37 2.38 711s 1 1 1 4 1 1 o 49.48 4.80 711s 1 1 1 4 1 2 o 10.45 1.03 711s 1 1 1 4 1 3 o 15.01 1.64 711s 1 1 1 4 1 4 o 4.52 1.88 711s 1 1 1 4 1 5 f 35.40 3.27 711s 1 1 1 4 1 6 o 8.15 2.10 711s 1 1 1 4 1 7 o 9.72 1.59 711s 1 1 1 4 1 8 o 5.93 1.88 711s 1 1 1 4 1 9 o 13.31 3.66 711s 1 1 1 4 2 0 o 12.03 2.31 711s 1 1 1 4 2 1 o 13.76 1.98 711s 1 1 1 4 2 2 o 10.87 2.55 711s 1 1 1 4 2 3 o 7.78 2.40 711s 1 1 1 4 2 4 o 19.45 4.53 711s 1 1 1 4 2 5 o 11.32 4.24 711s 1 1 1 4 2 6 o 7.29 3.50 711s 1 1 1 5 0 1 o 67.42 11.14 711s 1 1 1 5 0 2 o 13.50 3.13 711s 1 1 1 5 0 3 o 22.37 2.21 711s 1 1 1 5 0 4 o 56.42 6.72 711s 1 1 1 5 0 5 o 25.46 3.07 711s 1 1 1 5 0 6 o 38.61 4.82 711s 1 1 1 5 0 7 o 14.33 2.65 711s 1 1 1 5 0 8 f 4.56 2.78 711s 1 1 1 5 0 9 o 8.50 3.26 711s 1 1 1 5 1 0 o 21.65 2.85 711s 1 1 1 5 1 1 o 12.29 1.67 711s 1 1 1 5 1 2 o 11.21 3.27 711s 1 1 1 5 1 3 o 9.29 2.49 711s 1 1 1 5 1 4 o 12.76 2.42 711s 1 1 1 5 1 5 o 4.61 0.86 711s 1 1 1 5 1 6 o 21.81 2.38 711s 1 1 1 5 1 7 o 11.05 2.11 711s 1 1 1 5 1 8 o 4.27 1.64 711s 1 1 1 5 2 0 o 17.82 3.76 711s 1 1 1 5 2 1 o 13.94 3.96 711s 1 1 1 5 2 2 o 14.67 2.97 711s 1 1 1 5 2 3 o 12.27 4.35 711s 1 1 1 5 2 4 o 12.90 2.88 711s 1 1 1 5 2 5 o 8.21 2.77 711s 1 1 1 6 0 1 o 4.02 2.51 711s 1 1 1 6 0 2 o 14.11 3.04 711s 1 1 1 6 0 4 o 44.86 5.41 711s 1 1 1 6 0 5 f 22.85 4.74 711s 1 1 1 6 0 6 o 41.69 6.63 711s 1 1 1 6 0 7 o 7.42 2.96 711s 1 1 1 6 0 8 o 13.47 5.61 711s 1 1 1 6 1 0 o 25.42 2.26 711s 1 1 1 6 1 1 o 9.87 3.01 711s 1 1 1 6 1 2 o 28.37 5.85 711s 1 1 1 6 1 3 o 16.66 3.91 711s 1 1 1 6 1 4 o 23.02 5.62 711s 1 1 1 6 1 6 o 26.51 4.88 711s 1 1 1 6 1 7 o 3.67 1.58 711s 1 1 1 6 2 0 o 8.22 2.50 711s 1 1 1 6 2 2 o 9.67 2.35 711s 1 1 1 6 2 3 o 3.73 1.60 711s 1 1 1 7 0 1 o 10.99 3.37 711s 1 1 1 7 0 2 o 17.23 3.99 711s 1 1 1 7 0 3 o 5.15 2.69 711s 1 1 1 7 0 4 o 5.19 3.01 711s 1 1 1 7 0 5 o 23.76 3.00 711s 1 1 1 7 0 6 o 5.48 3.05 711s 1 1 1 7 0 7 o 6.05 3.12 711s 1 1 1 7 0 8 o 7.94 3.69 711s 1 1 1 7 1 0 o 33.08 3.93 711s 1 1 1 7 1 1 o 8.43 3.00 711s 1 1 1 7 1 2 o 10.12 3.61 711s 1 1 1 7 1 3 o 14.66 3.85 711s 1 1 1 7 1 4 o 9.43 3.13 711s 1 1 1 7 1 6 o 14.64 4.20 711s 1 1 1 7 2 0 o 14.80 3.92 711s 1 1 1 7 2 1 o 6.02 2.00 711s 1 1 1 8 0 2 o 29.07 8.06 711s 1 1 1 8 0 3 o 5.29 2.84 711s 1 1 1 8 0 4 o 22.81 5.95 711s 1 1 1 8 0 5 o 4.11 2.70 711s 1 1 1 8 1 0 o 7.24 1.50 711s 1 1 1 8 1 1 o 8.85 3.06 711s 1 1 1 8 1 2 o 6.83 3.09 711s 1 1 1 8 1 3 o 18.14 5.99 711s 1 1 1 9 0 1 o 13.49 3.22 711s 1 1 1 9 0 2 o 11.72 3.95 711s 1 1 1 10 0 2 o 7.39 3.73 711s 1 1 1 10 1 0 o 16.08 6.44 711s #END OF REFLECTIONS 711s 711s Starting iotbx.fetch_pdb 711s on Thu Mar 13 12:36:33 2025 by ubuntu 711s =============================================================================== 711s 711s Processing files: 711s ------------------------------------------------------------------------------- 711s 711s No files found 711s 711s Processing PHIL parameters: 711s ------------------------------------------------------------------------------- 711s 711s Adding command-line PHIL: 711s ------------------------- 711s action=all 711s 711s Final processed PHIL parameters: 711s ------------------------------------------------------------------------------- 711s fetch { 711s pdb_ids = "6yvd" 711s action = model data sequence half_maps *all 711s } 711s 711s 711s Starting job 711s =============================================================================== 711s Validating inputs: 711s 711s Model in PDB format saved to /tmp/autopkgtest.iHWuYU/autopkgtest_tmp/python3.13/6yvd.pdb 711s Model in mmCIF format saved to /tmp/autopkgtest.iHWuYU/autopkgtest_tmp/python3.13/6yvd.cif 711s Couldn't download sf for 6yvd at https://files.rcsb.org/download/6yvd-sf.cif.gz. 711s Cryo-EM map saved to /tmp/autopkgtest.iHWuYU/autopkgtest_tmp/python3.13/emd_10944.map.gz 711s Cryo-EM half map 1 saved to /tmp/autopkgtest.iHWuYU/autopkgtest_tmp/python3.13/emd_10944_half_map_1.map.gz 711s Cryo-EM half map 2 saved to /tmp/autopkgtest.iHWuYU/autopkgtest_tmp/python3.13/emd_10944_half_map_2.map.gz 711s Sequence saved to /tmp/autopkgtest.iHWuYU/autopkgtest_tmp/python3.13/6yvd.fa 711s 711s =============================================================================== 711s Job complete 711s Total CPU time: 0.37 seconds 711s Starting iotbx.fetch_pdb 711s on Thu Mar 13 12:36:53 2025 by ubuntu 711s =============================================================================== 711s 711s Processing files: 711s ------------------------------------------------------------------------------- 711s 711s No files found 711s 711s Processing PHIL parameters: 711s ------------------------------------------------------------------------------- 711s 711s Adding command-line PHIL: 711s ------------------------- 711s action=model 711s 711s Final processed PHIL parameters: 711s ------------------------------------------------------------------------------- 711s fetch { 711s pdb_ids = "6yvd" 711s } 711s 711s 711s Starting job 711s =============================================================================== 711s Validating inputs: 711s 711s Model in PDB format saved to /tmp/autopkgtest.iHWuYU/autopkgtest_tmp/python3.13/6yvd.pdb 711s Model in mmCIF format saved to /tmp/autopkgtest.iHWuYU/autopkgtest_tmp/python3.13/6yvd.cif 711s 711s =============================================================================== 711s Job complete 711s Total CPU time: 0.33 seconds 711s Starting iotbx.fetch_pdb 711s on Thu Mar 13 12:36:58 2025 by ubuntu 711s =============================================================================== 711s 711s Processing files: 711s ------------------------------------------------------------------------------- 711s 711s No files found 711s 711s Processing PHIL parameters: 711s ------------------------------------------------------------------------------- 711s 711s Adding command-line PHIL: 711s ------------------------- 711s action=model 711s 711s Final processed PHIL parameters: 711s ------------------------------------------------------------------------------- 711s fetch { 711s pdb_ids = "6yvd" 711s } 711s 711s 711s Starting job 711s =============================================================================== 711s Validating inputs: 711s 711s Model in PDB format saved to /tmp/autopkgtest.iHWuYU/autopkgtest_tmp/python3.13/6yvd.pdb 711s Model in mmCIF format saved to /tmp/autopkgtest.iHWuYU/autopkgtest_tmp/python3.13/6yvd.cif 711s 711s =============================================================================== 711s Job complete 711s Total CPU time: 0.33 seconds 711s Starting iotbx.fetch_pdb 711s on Thu Mar 13 12:37:03 2025 by ubuntu 711s =============================================================================== 711s 711s Processing files: 711s ------------------------------------------------------------------------------- 711s 711s No files found 711s 711s Processing PHIL parameters: 711s ------------------------------------------------------------------------------- 711s 711s Adding command-line PHIL: 711s ------------------------- 711s action=data 711s 711s Final processed PHIL parameters: 711s ------------------------------------------------------------------------------- 711s fetch { 711s pdb_ids = "6yvd" 711s action = model *data sequence half_maps all 711s } 711s 711s 711s Starting job 711s =============================================================================== 711s Validating inputs: 711s 711s Couldn't download sf for 6yvd at https://files.rcsb.org/download/6yvd-sf.cif.gz. 711s Cryo-EM map saved to /tmp/autopkgtest.iHWuYU/autopkgtest_tmp/python3.13/emd_10944.map.gz 711s 711s =============================================================================== 711s Job complete 711s Total CPU time: 0.33 seconds 711s Starting iotbx.fetch_pdb 711s on Thu Mar 13 12:37:09 2025 by ubuntu 711s =============================================================================== 711s 711s Processing files: 711s ------------------------------------------------------------------------------- 711s 711s No files found 711s 711s Processing PHIL parameters: 711s ------------------------------------------------------------------------------- 711s 711s Adding command-line PHIL: 711s ------------------------- 711s action=half_maps 711s 711s Final processed PHIL parameters: 711s ------------------------------------------------------------------------------- 711s fetch { 711s pdb_ids = "6yvd" 711s action = model data sequence *half_maps all 711s } 711s 711s 711s Starting job 711s =============================================================================== 711s Validating inputs: 711s 711s Cryo-EM half map 1 saved to /tmp/autopkgtest.iHWuYU/autopkgtest_tmp/python3.13/emd_10944_half_map_1.map.gz 711s Cryo-EM half map 2 saved to /tmp/autopkgtest.iHWuYU/autopkgtest_tmp/python3.13/emd_10944_half_map_2.map.gz 711s 711s =============================================================================== 711s Job complete 711s Total CPU time: 0.34 seconds 711s Starting iotbx.fetch_pdb 711s on Thu Mar 13 12:37:17 2025 by ubuntu 711s =============================================================================== 711s 711s Processing files: 711s ------------------------------------------------------------------------------- 711s 711s No files found 711s 711s Processing PHIL parameters: 711s ------------------------------------------------------------------------------- 711s 711s Adding command-line PHIL: 711s ------------------------- 711s action=sequence 711s 711s Final processed PHIL parameters: 711s ------------------------------------------------------------------------------- 711s fetch { 711s pdb_ids = "6yvd" 711s action = model data *sequence half_maps all 711s } 711s 711s 711s Starting job 711s =============================================================================== 711s Validating inputs: 711s 711s Sequence saved to /tmp/autopkgtest.iHWuYU/autopkgtest_tmp/python3.13/6yvd.fa 711s 711s =============================================================================== 711s Job complete 711s Total CPU time: 0.32 seconds 711s Starting iotbx.fetch_pdb 711s on Thu Mar 13 12:37:18 2025 by ubuntu 711s =============================================================================== 711s 711s Processing files: 711s ------------------------------------------------------------------------------- 711s 711s No files found 711s 711s Processing PHIL parameters: 711s ------------------------------------------------------------------------------- 711s 711s Adding command-line PHIL: 711s ------------------------- 711s action=all 711s 711s Final processed PHIL parameters: 711s ------------------------------------------------------------------------------- 711s fetch { 711s pdb_ids = "6yvd" 711s action = model data sequence half_maps *all 711s } 711s 711s 711s Starting job 711s =============================================================================== 711s Validating inputs: 711s 711s Model in PDB format saved to /tmp/autopkgtest.iHWuYU/autopkgtest_tmp/python3.13/6yvd.pdb 711s Model in mmCIF format saved to /tmp/autopkgtest.iHWuYU/autopkgtest_tmp/python3.13/6yvd.cif 711s Couldn't download sf for 6yvd at https://files.rcsb.org/download/6yvd-sf.cif.gz. 711s Cryo-EM map saved to /tmp/autopkgtest.iHWuYU/autopkgtest_tmp/python3.13/emd_10944.map.gz 711s Cryo-EM half map 1 saved to /tmp/autopkgtest.iHWuYU/autopkgtest_tmp/python3.13/emd_10944_half_map_1.map.gz 711s Cryo-EM half map 2 saved to /tmp/autopkgtest.iHWuYU/autopkgtest_tmp/python3.13/emd_10944_half_map_2.map.gz 711s Sequence saved to /tmp/autopkgtest.iHWuYU/autopkgtest_tmp/python3.13/6yvd.fa 711s 711s =============================================================================== 711s Job complete 711s Total CPU time: 0.35 seconds 711s OK 711s u+s,u,s: 0.23 0.21 0.02 711s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 711s 139 711s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 711s libtbx.python "/usr/lib/python3/dist-packages/scitbx/math/tests/tst_minimum_covering_ellipsoid.py" [FAIL] 2.4s 711s Time: 2.36 711s Return code: 139 711s OKs: 0 711s Standard error: 711s Segmentation fault (core dumped) 713s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 713s 139 713s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 713s libtbx.python "/usr/lib/python3/dist-packages/scitbx/math/tests/tst_gaussian_fit_1d_analytical.py" [FAIL] 2.3s 713s Time: 2.31 713s Return code: 139 713s OKs: 0 713s Standard error: 713s Segmentation fault (core dumped) 713s "/usr/lib/cctbx/python3.13/scitbx/math/tests/tst" [OK] 0.0s 713s Time: 0.00 713s Return code: 0 713s OKs: 2 713s Standard out: 713s copysign(3.f, +0.f) = 3 instead of 0.f as per C99 713s copysign(3.f, -0.f) = -3 instead of -0.f as per C99 713s linear interpolation test OK 713s OK 713s "/usr/lib/cctbx/python3.13/scitbx/matrix/tests/tst_givens" [OK] 0.0s 713s Time: 0.00 713s Return code: 0 713s OKs: 1 713s Standard out: 713s OK 713s "/usr/lib/cctbx/python3.13/scitbx/matrix/tests/tst_householder" [OK] 0.0s 713s Time: 0.00 713s Return code: 0 713s OKs: 1 713s Standard out: 713s OK 713s "/usr/lib/cctbx/python3.13/scitbx/matrix/tests/tst_svd" [OK] 0.0s 713s Time: 0.01 713s Return code: 0 713s OKs: 1 713s Standard out: 713s OK 713s "/usr/lib/cctbx/python3.13/scitbx/matrix/tests/tst_cholesky" [OK] 0.1s 713s Time: 0.13 713s Return code: 0 713s OKs: 1 713s Standard out: 713s Exercising sizes up to 100 713s Hilbert 713s Condition 1 713s Condition 2 713s Condition 3 713s Condition 4 713s OK 714s libtbx.python "/usr/lib/python3/dist-packages/scitbx/matrix/tests/tst_row_echelon.py" [OK] 0.1s 714s Time: 0.05 714s Return code: 0 714s OKs: 1 714s Standard out: 714s OK 714s libtbx.python "/usr/lib/python3/dist-packages/scitbx/matrix/tests/tst_householder.py" [OK] 0.1s 714s Time: 0.12 714s Return code: 0 714s OKs: 1 714s Standard out: 714s OK 714s libtbx.python "/usr/lib/python3/dist-packages/scitbx/linalg/tests/tst_matrix.py" [OK] 0.1s 714s Time: 0.12 714s Return code: 0 714s OKs: 1 714s Standard out: 714s OK 715s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 715s 139 715s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 715s libtbx.python "/usr/lib/python3/dist-packages/scitbx/math/tests/tst_cubic_equation.py" [FAIL] 4.3s 715s Time: 4.27 715s Return code: 139 715s OKs: 0 715s Standard error: 715s Segmentation fault (core dumped) 718s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 718s 139 718s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 718s libtbx.python "/usr/lib/python3/dist-packages/scitbx/linalg/tests/tst_cholesky.py" [FAIL] 3.8s 718s Time: 3.84 718s Return code: 139 718s OKs: 0 718s Standard error: 718s Segmentation fault (core dumped) 720s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 720s 139 720s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 720s libtbx.python "/usr/lib/python3/dist-packages/scitbx/linalg/tests/tst_svd.py" [FAIL] 4.3s 720s Time: 4.27 720s Return code: 139 720s OKs: 0 720s Standard error: 720s Segmentation fault (core dumped) 722s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 722s 139 722s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 722s libtbx.python "/usr/lib/python3/dist-packages/scitbx/linalg/tests/tst_eigensystem.py" [FAIL] 4.3s 722s Time: 4.25 722s Return code: 139 722s OKs: 0 722s Standard error: 722s Segmentation fault (core dumped) 724s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 724s 139 724s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 724s libtbx.python "/usr/lib/python3/dist-packages/scitbx/linalg/tests/tst_lapack_svd.py" [FAIL] 4.2s 724s Time: 4.21 724s Return code: 139 724s OKs: 0 724s Standard error: 724s Segmentation fault (core dumped) 724s libtbx.python "/usr/lib/python3/dist-packages/scitbx/error/tst_error.py" [OK] 0.1s 724s Time: 0.06 724s Return code: 0 724s OKs: 1 724s Standard out: 724s OK 724s libtbx.python "/usr/lib/python3/dist-packages/scitbx/stl/tst_map.py" [OK] 0.0s 724s Time: 0.04 724s Return code: 0 724s OKs: 1 724s Standard out: 724s OK 724s libtbx.python "/usr/lib/python3/dist-packages/scitbx/stl/tst_set.py" [OK] 0.0s 724s Time: 0.05 724s Return code: 0 724s OKs: 1 724s Standard out: 724s OK 724s libtbx.python "/usr/lib/python3/dist-packages/scitbx/stl/tst_vector.py" [OK] 0.0s 724s Time: 0.04 724s Return code: 0 724s OKs: 1 724s Standard out: 724s OK 726s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 726s 139 726s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 726s libtbx.python "/usr/lib/python3/dist-packages/scitbx/linalg/tests/tst_lapack_dsyev.py" [FAIL] 4.2s 726s Time: 4.19 726s Return code: 139 726s OKs: 0 726s Standard error: 726s Segmentation fault (core dumped) 728s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 728s 139 728s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 728s libtbx.python "/usr/lib/python3/dist-packages/scitbx/array_family/boost_python/regression_test.py" [FAIL] 4.2s 728s Time: 4.16 728s Return code: 139 728s OKs: 0 728s Standard error: 728s Segmentation fault (core dumped) 731s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 731s 139 731s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 731s libtbx.python "/usr/lib/python3/dist-packages/scitbx/array_family/boost_python/tst_flex.py" [FAIL] 5.0s 731s Time: 4.95 731s Return code: 139 731s OKs: 0 731s Standard error: 731s Segmentation fault (core dumped) 733s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 733s 139 733s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 733s libtbx.python "/usr/lib/python3/dist-packages/scitbx/array_family/boost_python/tst_numpy_bridge.py" [FAIL] 4.8s 733s Time: 4.80 733s Return code: 139 733s OKs: 0 733s Standard error: 733s Segmentation fault (core dumped) 735s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 735s 139 735s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 735s libtbx.python "/usr/lib/python3/dist-packages/scitbx/array_family/boost_python/tst_smart_selection.py" [FAIL] 4.2s 735s Time: 4.16 735s Return code: 139 735s OKs: 0 735s Standard error: 735s Segmentation fault (core dumped) 737s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 737s 139 737s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 737s libtbx.python "/usr/lib/python3/dist-packages/scitbx/array_family/boost_python/tst_shared.py" [FAIL] 4.2s 737s Time: 4.16 737s Return code: 139 737s OKs: 0 737s Standard error: 737s Segmentation fault (core dumped) 740s libtbx.python "/usr/lib/python3/dist-packages/scitbx/array_family/boost_python/tst_cost_of_m_handle_in_af_shared.py" [OK] 2.9s 740s Time: 2.89 740s Return code: 0 740s OKs: 1 740s Standard out: 740s Loop over af::shared: 740s data_size=1000, n_repeats=30000 740s size+begin inside loop: 0.21 s 740s begin outside loop: 0.16 s 740s size+begin outside loop: 0.12 s 740s 740s data_size=10000, n_repeats=3000 740s size+begin inside loop: 0.21 s 740s begin outside loop: 0.14 s 740s size+begin outside loop: 0.12 s 740s 740s data_size=100000, n_repeats=300 740s size+begin inside loop: 0.23 s 740s begin outside loop: 0.19 s 740s size+begin outside loop: 0.12 s 740s 740s data_size=1000000, n_repeats=30 740s size+begin inside loop: 0.23 s 740s begin outside loop: 0.17 s 740s size+begin outside loop: 0.12 s 740s 740s data_size=10000000, n_repeats=3 740s size+begin inside loop: 0.30 s 740s begin outside loop: 0.19 s 740s size+begin outside loop: 0.12 s 740s 740s OK 740s libtbx.python "/usr/lib/python3/dist-packages/scitbx/tests/tst_cubicle_neighbors.py" [OK] 0.1s 740s Time: 0.11 740s Return code: 0 740s OKs: 1 740s Standard out: 740s OK 740s libtbx.python "/usr/lib/python3/dist-packages/scitbx/tests/tst_r3_utils.py" [OK] 0.1s 740s Time: 0.11 740s Return code: 0 740s OKs: 1 740s Standard out: 740s OK 741s libtbx.python "/usr/lib/python3/dist-packages/scitbx/tests/tst_regular_grid_on_unit_sphere.py" [OK] 0.4s 741s Time: 0.45 741s Return code: 0 741s OKs: 0 743s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 743s 139 743s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 743s libtbx.python "/usr/lib/python3/dist-packages/scitbx/matrix/__init__.py" [FAIL] 2.5s 743s Time: 2.52 743s Return code: 139 743s OKs: 0 743s Standard error: 743s Segmentation fault (core dumped) 746s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 746s 139 746s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 746s libtbx.python "/usr/lib/python3/dist-packages/scitbx/python_utils/tst_random_transform.py" [FAIL] 2.4s 746s Time: 2.38 746s Return code: 139 746s OKs: 0 746s Standard error: 746s Segmentation fault (core dumped) 746s libtbx.python "/usr/lib/python3/dist-packages/scitbx/python_utils/tst_graph.py" [OK] 0.0s 746s Time: 0.04 746s Return code: 0 746s OKs: 1 746s Standard out: 746s OK 746s libtbx.python "/usr/lib/python3/dist-packages/scitbx/python_utils/tst_robust.py" [OK] 0.1s 746s Time: 0.10 746s Return code: 0 746s OKs: 1 746s Standard out: 746s OK 748s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 748s 139 748s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 748s libtbx.python "/usr/lib/python3/dist-packages/scitbx/math/superpose.py" [FAIL] 2.2s 748s Time: 2.20 748s Return code: 139 748s OKs: 0 748s Standard error: 748s Segmentation fault (core dumped) 749s libtbx.python "/usr/lib/python3/dist-packages/scitbx/array_family/boost_python/tst_integer_offsets_vs_pointers.py" [OK] 13.7s 749s Time: 13.69 749s Return code: 0 749s OKs: 1 749s Standard out: 749s data_size = 1000 n_repeats = 30000 749s use_pointers = False 749s use_iterators = 0 time = 0.53 s overhead = 0.00 s (d[p[i]] -1.02318e-08) 749s use_iterators = 1 time = 0.20 s overhead = 0.00 s (d[*p++] -1.02318e-08) 749s use_pointers = True 749s use_iterators = 0 time = 0.24 s overhead = 0.00 s (*dp[i] -1.02318e-08) 749s use_iterators = 1 time = 0.62 s overhead = 0.00 s (**dpi++ -1.02318e-08) 749s use_iterators = 2 time = 0.08 s overhead = 0.00 s (**dpp++ -1.02318e-08) 749s data_size = 10000 n_repeats = 3000 749s use_pointers = False 749s use_iterators = 0 time = 0.53 s overhead = 0.00 s (d[p[i]] -5.72978e-08) 749s use_iterators = 1 time = 0.23 s overhead = 0.00 s (d[*p++] -5.72978e-08) 749s use_pointers = True 749s use_iterators = 0 time = 0.24 s overhead = 0.00 s (*dp[i] -5.72978e-08) 749s use_iterators = 1 time = 0.62 s overhead = 0.00 s (**dpi++ -5.72978e-08) 749s use_iterators = 2 time = 0.08 s overhead = 0.00 s (**dpp++ -5.72978e-08) 749s data_size = 100000 n_repeats = 300 749s use_pointers = False 749s use_iterators = 0 time = 0.53 s overhead = 0.00 s (d[p[i]] -2.00808e-07) 749s use_iterators = 1 time = 0.23 s overhead = 0.00 s (d[*p++] -2.00808e-07) 749s use_pointers = True 749s use_iterators = 0 time = 0.24 s overhead = 0.00 s (*dp[i] -2.00808e-07) 749s use_iterators = 1 time = 0.63 s overhead = 0.00 s (**dpi++ -2.00808e-07) 749s use_iterators = 2 time = 0.09 s overhead = 0.00 s (**dpp++ -2.00808e-07) 749s data_size = 1000000 n_repeats = 30 749s use_pointers = False 749s use_iterators = 0 time = 0.53 s overhead = 0.02 s (d[p[i]] -7.28182e-07) 749s use_iterators = 1 time = 0.28 s overhead = 0.02 s (d[*p++] -7.28182e-07) 749s use_pointers = True 749s use_iterators = 0 time = 0.27 s overhead = 0.02 s (*dp[i] -7.28182e-07) 749s use_iterators = 1 time = 0.87 s overhead = 0.02 s (**dpi++ -7.28182e-07) 749s use_iterators = 2 time = 0.18 s overhead = 0.02 s (**dpp++ -7.28182e-07) 749s data_size = 10000000 n_repeats = 3 749s use_pointers = False 749s use_iterators = 0 time = 0.77 s overhead = 0.22 s (d[p[i]] 1.51677e-07) 749s use_iterators = 1 time = 0.50 s overhead = 0.21 s (d[*p++] 1.51677e-07) 749s use_pointers = True 749s use_iterators = 0 time = 0.47 s overhead = 0.20 s (*dp[i] 1.51677e-07) 749s use_iterators = 1 time = 1.56 s overhead = 0.21 s (**dpi++ 1.51677e-07) 749s use_iterators = 2 time = 0.32 s overhead = 0.21 s (**dpp++ 1.51677e-07) 749s OK 750s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 750s 139 750s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 750s libtbx.python "/usr/lib/python3/dist-packages/scitbx/math/spe.py" [FAIL] 2.1s 750s Time: 2.09 750s Return code: 139 750s OKs: 0 750s Standard error: 750s Segmentation fault (core dumped) 754s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 754s 139 754s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 754s libtbx.python "/usr/lib/python3/dist-packages/scitbx/math/incremental_SO3_sampling.py" [FAIL] 4.8s 754s Time: 4.80 754s Return code: 139 754s OKs: 0 754s Standard error: 754s Segmentation fault (core dumped) 756s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 756s 139 756s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 756s libtbx.python "/usr/lib/python3/dist-packages/scitbx/math/tests/tst_curve_fitting.py" [FAIL] 5.7s 756s Time: 5.70 756s Return code: 139 756s OKs: 0 756s Standard error: 756s Segmentation fault (core dumped) 756s libtbx.python "/usr/lib/python3/dist-packages/scitbx/math/tests/tst_similarity_indices.py" [OK] 0.1s 756s Time: 0.11 756s Return code: 0 756s OKs: 1 756s Standard out: 756s OK 758s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 758s 139 758s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 758s libtbx.python "/usr/lib/python3/dist-packages/scitbx/math/tests/tst_weighted_correlation.py" [FAIL] 4.2s 758s Time: 4.22 758s Return code: 139 758s OKs: 0 758s Standard error: 758s Segmentation fault (core dumped) 758s libtbx.python "/usr/lib/python3/dist-packages/scitbx/math/tests/tst_fit_quadratic_function.py" [OK] 0.1s 758s Time: 0.14 758s Return code: 0 758s OKs: 1 758s Standard out: 758s OK 759s libtbx.python "/usr/lib/python3/dist-packages/scitbx/math/tests/tst_gcd.py" [OK] 0.6s 759s Time: 0.57 759s Return code: 0 759s OKs: 1 759s Standard out: 759s compare_with_boost_rational_gcd(gcd_int_simple) 759s compare_with_boost_rational_gcd(gcd_long_simple) 759s compare_with_boost_rational_gcd(gcd_long_binary) 759s gcd_int_boost 999 w=0.05 u+s=0.06 759s gcd_int_simple 999 w=0.03 u+s=0.03 759s gcd_long_boost 999 w=0.05 u+s=0.04 759s gcd_long_simple 999 w=0.03 u+s=0.04 759s gcd_unsigned_long_binary 999 w=0.11 u+s=0.10 759s gcd_long_binary 999 w=0.11 u+s=0.11 759s OK 760s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 760s 139 760s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 760s libtbx.python "/usr/lib/python3/dist-packages/scitbx/math/tests/tst_exp_functions.py" [FAIL] 4.2s 760s Time: 4.24 760s Return code: 139 760s OKs: 0 760s Standard error: 760s Segmentation fault (core dumped) 763s Standard error: 763s Segmentation fault (core dumped) 763s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 763s 139 763s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 763s libtbx.python "/usr/lib/python3/dist-packages/scitbx/math/tests/tst_math.py" [FAIL] 4.0s 763s Time: 4.03 763s Return code: 139 763s OKs: 0 763s libtbx.python "/usr/lib/python3/dist-packages/scitbx/math/tests/tst_r3_rotation.py" [OK] 2.8s 763s Time: 2.85 763s Return code: 0 763s OKs: 0 763s Standard out: 763s times unit quaternion <-> matrix 763s py: 0.03 0.02 s 763s c++: 0.04 0.05 s 763s ratio: 0.69 0.48 763s u+s,u,s: 2.81 2.80 0.01 763s libtbx.python "/usr/lib/python3/dist-packages/scitbx/math/tests/tst_line_search.py" [OK] 0.1s 763s Time: 0.12 763s Return code: 0 763s OKs: 1 763s Standard out: 763s OK 765s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 765s 139 765s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 765s libtbx.python "/usr/lib/python3/dist-packages/scitbx/math/tests/tst_resample.py" [FAIL] 2.1s 765s Time: 2.14 765s Return code: 139 765s OKs: 0 765s Standard error: 765s Segmentation fault (core dumped) 767s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 767s 139 767s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 767s libtbx.python "/usr/lib/python3/dist-packages/scitbx/math/tests/tst_gaussian.py" [FAIL] 3.8s 767s Time: 3.82 767s Return code: 139 767s OKs: 0 767s Standard error: 767s Segmentation fault (core dumped) 767s libtbx.python "/usr/lib/python3/dist-packages/scitbx/math/tests/tst_bessel.py" [OK] 0.1s 767s Time: 0.12 767s Return code: 0 767s OKs: 0 769s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 769s 139 769s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 769s libtbx.python "/usr/lib/python3/dist-packages/scitbx/math/tests/tst_quadrature.py" [FAIL] 4.3s 769s Time: 4.32 769s Return code: 139 769s OKs: 0 769s Standard error: 769s Segmentation fault (core dumped) 770s libtbx.python "/usr/lib/python3/dist-packages/scitbx/math/tests/tst_euler_angles.py" [OK] 0.6s 770s Time: 0.63 770s Return code: 0 770s OKs: 0 770s Standard out: 770s u+s,u,s: 0.60 0.59 0.01 770s libtbx.python "/usr/lib/python3/dist-packages/scitbx/math/tests/tst_superpose.py" [OK] 0.2s 770s Time: 0.18 770s Return code: 0 770s OKs: 1 770s Standard out: 770s OK 770s libtbx.python "/usr/lib/python3/dist-packages/scitbx/math/tests/tst_uniform_rotation_matrix.py" [OK] 0.1s 770s Time: 0.13 770s Return code: 0 770s OKs: 1 770s Standard out: 770s OK 771s Standard error: 771s Segmentation fault (core dumped) 771s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 771s 139 771s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 771s libtbx.python "/usr/lib/python3/dist-packages/scitbx/math/tests/tst_halton.py" [FAIL] 4.1s 771s Time: 4.07 771s Return code: 139 771s OKs: 0 771s libtbx.python "/usr/lib/python3/dist-packages/scitbx/math/tst_zernike_mom.py" [OK] 0.1s 771s Time: 0.13 771s Return code: 0 771s OKs: 1 771s Standard out: 771s OK 771s libtbx.python "/usr/lib/python3/dist-packages/scitbx/math/sieve_of_eratosthenes.py" [OK] 0.0s 771s Time: 0.02 771s Return code: 0 771s OKs: 1 771s Standard out: 771s OK 771s libtbx.python "/usr/lib/python3/dist-packages/scitbx/math/besselk.py" [OK] 0.0s 771s Time: 0.02 771s Return code: 0 771s OKs: 1 771s Standard out: 771s OK 774s Standard error: 774s Segmentation fault (core dumped) 774s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 774s 139 774s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 774s libtbx.python "/usr/lib/python3/dist-packages/scitbx/math/scale_curves.py" [FAIL] 2.3s 774s Time: 2.27 774s Return code: 139 774s OKs: 0 776s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 776s 139 776s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 776s libtbx.python "/usr/lib/python3/dist-packages/scitbx/math/tests/tst_fit_peak.py" [FAIL] 2.3s 776s Time: 2.29 776s Return code: 139 776s OKs: 0 776s Standard error: 776s Segmentation fault (core dumped) 778s Standard error: 778s Segmentation fault (core dumped) 778s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 778s 139 778s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 778s libtbx.python "/usr/lib/python3/dist-packages/scitbx/math/tests/tst_clustering.py" [FAIL] 2.1s 778s Time: 2.13 778s Return code: 139 778s OKs: 0 778s libtbx.python "/usr/lib/python3/dist-packages/scitbx/math/tests/tst_orthonormal_basis.py" [OK] 0.1s 778s Time: 0.13 778s Return code: 0 778s OKs: 1 778s Standard out: 778s OK 778s libtbx.python "/usr/lib/python3/dist-packages/scitbx/math/tests/tst_g_function.py" [OK] 0.1s 778s Time: 0.12 778s Return code: 0 778s OKs: 0 778s libtbx.python "/usr/lib/python3/dist-packages/scitbx/math/tests/tst_angle_derivative.py" [OK] 0.1s 778s Time: 0.12 778s Return code: 0 778s OKs: 1 778s Standard out: 778s OK 781s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 781s 139 781s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 781s libtbx.python "/usr/lib/python3/dist-packages/scitbx/math/tst_zernike.py" [FAIL] 10.8s 781s Time: 10.84 781s Return code: 139 781s OKs: 0 781s Standard error: 781s Segmentation fault (core dumped) 784s Standard error: 784s Segmentation fault (core dumped) 784s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 784s 139 784s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 784s libtbx.python "/usr/lib/python3/dist-packages/scitbx/math/tests/tst_periodogram.py" [FAIL] 4.6s 784s Time: 4.58 784s Return code: 139 784s OKs: 0 784s libtbx.python "/usr/lib/python3/dist-packages/scitbx/math/tests/tst_tetrahedron.py" [OK] 0.1s 784s Time: 0.14 784s Return code: 0 784s OKs: 1 784s Standard out: 784s OK 784s libtbx.python "/usr/lib/python3/dist-packages/scitbx/math/tst_undirected_graph.py" [OK] 0.1s 784s Time: 0.12 784s Return code: 0 784s OKs: 0 784s libtbx.python "/usr/lib/python3/dist-packages/scitbx/math/tst_so3_lie_algebra.py" [OK] 0.1s 784s Time: 0.11 784s Return code: 0 784s OKs: 0 784s libtbx.python "/usr/lib/python3/dist-packages/scitbx/minpack/tst.py" [OK] 0.1s 784s Time: 0.11 784s Return code: 0 784s OKs: 1 784s Standard out: 784s OK 784s libtbx.python "/usr/lib/python3/dist-packages/scitbx/lbfgs/tst_ext.py" [OK] 0.1s 784s Time: 0.10 784s Return code: 0 784s OKs: 1 784s Standard out: 784s OK 785s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 785s 139 785s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 785s libtbx.python "/usr/lib/python3/dist-packages/scitbx/math/tests/tst_error_propagation_matrix_inverse.py" [FAIL] 4.2s 785s Time: 4.23 785s Return code: 139 785s OKs: 0 785s Standard error: 785s Segmentation fault (core dumped) 787s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 787s 139 787s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 787s libtbx.python "/usr/lib/python3/dist-packages/scitbx/lbfgs/tst_curvatures.py" [FAIL] 3.5s 787s Time: 3.55 787s Return code: 139 787s OKs: 0 787s Standard error: 787s Segmentation fault (core dumped) 787s libtbx.python "/usr/lib/python3/dist-packages/scitbx/lbfgs/tst_func_free_line_search.py" [OK] 0.1s 787s Time: 0.11 787s Return code: 0 787s OKs: 1 787s Standard out: 787s The answer is: [2, -5, 500] 787s The start value is: [-100, 203, 999] 787s scitbx.lbfgs: use gradient_only line search: True 787s scitbx.lbfgs: use gradient_only line search: False 787s OK 787s "/usr/lib/cctbx/python3.13/scitbx/lbfgs/tst_lbfgs" [OK] 0.0s 787s Time: 0.00 787s Return code: 0 787s OKs: 0 787s Standard out: 787s n: 100 787s m: 5 787s xtol: 1e-16 787s f: 254.065 gnorm: 325.365 787s 1 2 0.000607303 787s f: 207.819 gnorm: 54.5204 787s 2 3 1 787s f: 206.329 gnorm: 12.6873 787s 3 4 1 787s f: 206.158 gnorm: 12.9705 787s 4 5 1 787s f: 204.568 gnorm: 36.0649 787s 5 6 1 787s f: 201.009 gnorm: 69.9702 787s 6 7 1 787s f: 132.076 gnorm: 99.1014 787s 7 11 2.30835 787s f: 131.557 gnorm: 80.1033 787s 8 13 0.152436 787s f: 120.196 gnorm: 66.244 787s 9 15 5 787s f: 105.948 gnorm: 116.627 787s 10 16 1 787s f: 87.4002 gnorm: 17.1325 787s 11 17 1 787s f: 72.7773 gnorm: 32.6968 787s 12 18 1 787s f: 67.7306 gnorm: 49.5851 787s 13 20 0.213662 787s f: 60.0913 gnorm: 52.8678 787s 14 21 1 787s f: 45.9493 gnorm: 28.0796 787s 15 22 1 787s f: 37.3669 gnorm: 39.3487 787s 16 23 1 787s f: 23.0492 gnorm: 14.5867 787s 17 24 1 787s f: 19.8468 gnorm: 17.9762 787s 18 26 0.156708 787s f: 17.6677 gnorm: 48.6045 787s 19 27 1 787s f: 13.9465 gnorm: 22.2498 787s 20 28 1 787s f: 9.11604 gnorm: 28.0105 787s 21 29 1 787s f: 5.82159 gnorm: 10.2151 787s 22 30 1 787s f: 4.75971 gnorm: 28.511 787s 23 32 0.436181 787s f: 2.35807 gnorm: 22.65 787s 24 33 1 787s f: 1.55734 gnorm: 15.4752 787s 25 34 1 787s f: 0.810498 gnorm: 2.3865 787s 26 36 0.404632 787s f: 0.508703 gnorm: 9.94499 787s 27 38 0.247512 787s f: 0.363447 gnorm: 15.2129 787s 28 39 1 787s f: 0.167247 gnorm: 9.7728 787s 29 40 1 787s f: 0.0372373 gnorm: 1.32586 787s 30 41 1 787s f: 0.0098316 gnorm: 4.14194 787s 31 42 1 787s f: 0.000471098 gnorm: 0.567595 787s 32 43 1 787s f: 3.2788e-06 gnorm: 0.027547 787s 33 44 1 787s f: 2.34044e-08 gnorm: 0.00607363 787s 34 45 1 787s f: 2.09469e-13 gnorm: 1.31535e-05 787s 35 46 1 790s Standard error: 790s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 790s 139 790s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 790s libtbx.python "/usr/lib/python3/dist-packages/scitbx/lbfgsb/boost_python/tst_lbfgsb.py" [FAIL] 2.3s 790s Time: 2.30 790s Return code: 139 790s OKs: 0 790s Segmentation fault (core dumped) 792s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 792s 139 792s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 792s libtbx.python "/usr/lib/python3/dist-packages/scitbx/fftpack/boost_python/tst_fftpack.py" [FAIL] 2.3s 792s Time: 2.32 792s Return code: 139 792s OKs: 0 792s Standard error: 792s Segmentation fault (core dumped) 792s libtbx.python "/usr/lib/python3/dist-packages/scitbx/lbfgs/tst_lbfgs_fem.py" [OK] 7.2s 792s Time: 7.23 792s Return code: 0 792s OKs: 1 792s Standard out: 792s scitbx.python "/usr/lib/python3/dist-packages/scitbx/lbfgs/tst_lbfgs_fem.py" fortran 2 5 -1 0 792s scitbx.python "/usr/lib/python3/dist-packages/scitbx/lbfgs/tst_lbfgs_fem.py" raw_reference 2 5 -1 0 792s scitbx.python "/usr/lib/python3/dist-packages/scitbx/lbfgs/tst_lbfgs_fem.py" raw 2 5 -1 0 792s scitbx.python "/usr/lib/python3/dist-packages/scitbx/lbfgs/tst_lbfgs_fem.py" fortran 100 4 -1 1 792s scitbx.python "/usr/lib/python3/dist-packages/scitbx/lbfgs/tst_lbfgs_fem.py" raw_reference 100 4 -1 1 792s scitbx.python "/usr/lib/python3/dist-packages/scitbx/lbfgs/tst_lbfgs_fem.py" raw 100 4 -1 1 792s scitbx.python "/usr/lib/python3/dist-packages/scitbx/lbfgs/tst_lbfgs_fem.py" fortran 2 5 -1 2 792s scitbx.python "/usr/lib/python3/dist-packages/scitbx/lbfgs/tst_lbfgs_fem.py" raw_reference 2 5 -1 2 792s scitbx.python "/usr/lib/python3/dist-packages/scitbx/lbfgs/tst_lbfgs_fem.py" raw 2 5 -1 2 792s scitbx.python "/usr/lib/python3/dist-packages/scitbx/lbfgs/tst_lbfgs_fem.py" fortran 4 5 -1 3 792s scitbx.python "/usr/lib/python3/dist-packages/scitbx/lbfgs/tst_lbfgs_fem.py" raw_reference 4 5 -1 3 792s scitbx.python "/usr/lib/python3/dist-packages/scitbx/lbfgs/tst_lbfgs_fem.py" raw 4 5 -1 3 792s scitbx.python "/usr/lib/python3/dist-packages/scitbx/lbfgs/tst_lbfgs_fem.py" fortran 4 6 0 0 792s scitbx.python "/usr/lib/python3/dist-packages/scitbx/lbfgs/tst_lbfgs_fem.py" raw_reference 4 6 0 0 792s scitbx.python "/usr/lib/python3/dist-packages/scitbx/lbfgs/tst_lbfgs_fem.py" raw 4 6 0 0 792s scitbx.python "/usr/lib/python3/dist-packages/scitbx/lbfgs/tst_lbfgs_fem.py" fortran 14 6 0 1 792s scitbx.python "/usr/lib/python3/dist-packages/scitbx/lbfgs/tst_lbfgs_fem.py" raw_reference 14 6 0 1 792s scitbx.python "/usr/lib/python3/dist-packages/scitbx/lbfgs/tst_lbfgs_fem.py" raw 14 6 0 1 792s scitbx.python "/usr/lib/python3/dist-packages/scitbx/lbfgs/tst_lbfgs_fem.py" fortran 14 4 0 2 792s scitbx.python "/usr/lib/python3/dist-packages/scitbx/lbfgs/tst_lbfgs_fem.py" raw_reference 14 4 0 2 792s scitbx.python "/usr/lib/python3/dist-packages/scitbx/lbfgs/tst_lbfgs_fem.py" raw 14 4 0 2 792s scitbx.python "/usr/lib/python3/dist-packages/scitbx/lbfgs/tst_lbfgs_fem.py" fortran 14 2 0 3 792s scitbx.python "/usr/lib/python3/dist-packages/scitbx/lbfgs/tst_lbfgs_fem.py" raw_reference 14 2 0 3 792s scitbx.python "/usr/lib/python3/dist-packages/scitbx/lbfgs/tst_lbfgs_fem.py" raw 14 2 0 3 792s scitbx.python "/usr/lib/python3/dist-packages/scitbx/lbfgs/tst_lbfgs_fem.py" fortran 4 6 1 0 792s scitbx.python "/usr/lib/python3/dist-packages/scitbx/lbfgs/tst_lbfgs_fem.py" raw_reference 4 6 1 0 792s scitbx.python "/usr/lib/python3/dist-packages/scitbx/lbfgs/tst_lbfgs_fem.py" raw 4 6 1 0 792s scitbx.python "/usr/lib/python3/dist-packages/scitbx/lbfgs/tst_lbfgs_fem.py" fortran 14 4 1 1 792s scitbx.python "/usr/lib/python3/dist-packages/scitbx/lbfgs/tst_lbfgs_fem.py" raw_reference 14 4 1 1 792s scitbx.python "/usr/lib/python3/dist-packages/scitbx/lbfgs/tst_lbfgs_fem.py" raw 14 4 1 1 792s scitbx.python "/usr/lib/python3/dist-packages/scitbx/lbfgs/tst_lbfgs_fem.py" fortran 100 7 1 2 792s scitbx.python "/usr/lib/python3/dist-packages/scitbx/lbfgs/tst_lbfgs_fem.py" raw_reference 100 7 1 2 792s scitbx.python "/usr/lib/python3/dist-packages/scitbx/lbfgs/tst_lbfgs_fem.py" raw 100 7 1 2 792s scitbx.python "/usr/lib/python3/dist-packages/scitbx/lbfgs/tst_lbfgs_fem.py" fortran 100 7 1 3 792s scitbx.python "/usr/lib/python3/dist-packages/scitbx/lbfgs/tst_lbfgs_fem.py" raw_reference 100 7 1 3 792s scitbx.python "/usr/lib/python3/dist-packages/scitbx/lbfgs/tst_lbfgs_fem.py" raw 100 7 1 3 792s scitbx.python "/usr/lib/python3/dist-packages/scitbx/lbfgs/tst_lbfgs_fem.py" fortran 4 5 2 0 792s scitbx.python "/usr/lib/python3/dist-packages/scitbx/lbfgs/tst_lbfgs_fem.py" raw_reference 4 5 2 0 792s scitbx.python "/usr/lib/python3/dist-packages/scitbx/lbfgs/tst_lbfgs_fem.py" raw 4 5 2 0 792s scitbx.python "/usr/lib/python3/dist-packages/scitbx/lbfgs/tst_lbfgs_fem.py" fortran 100 4 2 1 792s scitbx.python "/usr/lib/python3/dist-packages/scitbx/lbfgs/tst_lbfgs_fem.py" raw_reference 100 4 2 1 792s scitbx.python "/usr/lib/python3/dist-packages/scitbx/lbfgs/tst_lbfgs_fem.py" raw 100 4 2 1 792s scitbx.python "/usr/lib/python3/dist-packages/scitbx/lbfgs/tst_lbfgs_fem.py" fortran 2 4 2 2 792s scitbx.python "/usr/lib/python3/dist-packages/scitbx/lbfgs/tst_lbfgs_fem.py" raw_reference 2 4 2 2 792s scitbx.python "/usr/lib/python3/dist-packages/scitbx/lbfgs/tst_lbfgs_fem.py" raw 2 4 2 2 792s scitbx.python "/usr/lib/python3/dist-packages/scitbx/lbfgs/tst_lbfgs_fem.py" fortran 14 6 2 3 792s scitbx.python "/usr/lib/python3/dist-packages/scitbx/lbfgs/tst_lbfgs_fem.py" raw_reference 14 6 2 3 792s scitbx.python "/usr/lib/python3/dist-packages/scitbx/lbfgs/tst_lbfgs_fem.py" raw 14 6 2 3 792s scitbx.python "/usr/lib/python3/dist-packages/scitbx/lbfgs/tst_lbfgs_fem.py" fortran 2 5 3 0 792s scitbx.python "/usr/lib/python3/dist-packages/scitbx/lbfgs/tst_lbfgs_fem.py" raw_reference 2 5 3 0 792s scitbx.python "/usr/lib/python3/dist-packages/scitbx/lbfgs/tst_lbfgs_fem.py" raw 2 5 3 0 792s scitbx.python "/usr/lib/python3/dist-packages/scitbx/lbfgs/tst_lbfgs_fem.py" fortran 4 2 3 1 792s scitbx.python "/usr/lib/python3/dist-packages/scitbx/lbfgs/tst_lbfgs_fem.py" raw_reference 4 2 3 1 792s scitbx.python "/usr/lib/python3/dist-packages/scitbx/lbfgs/tst_lbfgs_fem.py" raw 4 2 3 1 792s scitbx.python "/usr/lib/python3/dist-packages/scitbx/lbfgs/tst_lbfgs_fem.py" fortran 100 2 3 2 792s scitbx.python "/usr/lib/python3/dist-packages/scitbx/lbfgs/tst_lbfgs_fem.py" raw_reference 100 2 3 2 792s scitbx.python "/usr/lib/python3/dist-packages/scitbx/lbfgs/tst_lbfgs_fem.py" raw 100 2 3 2 792s scitbx.python "/usr/lib/python3/dist-packages/scitbx/lbfgs/tst_lbfgs_fem.py" fortran 2 7 3 3 792s scitbx.python "/usr/lib/python3/dist-packages/scitbx/lbfgs/tst_lbfgs_fem.py" raw_reference 2 7 3 3 792s scitbx.python "/usr/lib/python3/dist-packages/scitbx/lbfgs/tst_lbfgs_fem.py" raw 2 7 3 3 792s usr+sys time: 0.20 seconds 792s wall clock time: 7.10 seconds 792s OK 792s libtbx.python "/usr/lib/python3/dist-packages/scitbx/examples/flex_array_loops.py" [OK] 0.1s 792s Time: 0.09 792s Return code: 0 792s OKs: 1 792s Standard out: 792s 10.0 792s 11.0 792s 12.0 792s 792s 10.0 792s 11.0 792s 12.0 792s 792s 0 10.0 792s 1 11.0 792s 2 12.0 792s 792s 100.0 792s 110.0 792s 120.0 792s 792s 200.0 792s 210.0 792s 220.0 792s 792s OK 793s libtbx.python "/usr/lib/python3/dist-packages/scitbx/examples/principal_axes_of_inertia.py" [OK] 0.1s 793s Time: 0.10 793s Return code: 0 793s OKs: 0 793s Standard out: 793s (7.796692307692308, 1.365076923076923, 8.357692307692307) 793s (38.140037692307715, 97.02526753846156, 79.0222196923077, -19.808558307692305, 35.14258523076924, 7.6620366923076935) 793s [104.22746487361265, 97.26642591377534, 12.693634135689015] 793s [-0.43905397167468396, 0.8222124337102901, -0.36221309171382476, 0.3037216796237081, 0.5152398514117881, 0.8014243799908461, 0.8455677094610694, 0.24185658843488295, -0.4759418445014057] 793s libtbx.python "/usr/lib/python3/dist-packages/scitbx/examples/lbfgs_recipe.py" [OK] 0.1s 793s Time: 0.09 793s Return code: 0 793s OKs: 1 793s Standard out: 793s refinery 793s compute_functional_and_gradients 793s callback_after_step 793s OK 794s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 794s 139 794s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 794s libtbx.python "/usr/lib/python3/dist-packages/scitbx/examples/flex_grid.py" [FAIL] 2.1s 794s Time: 2.09 794s Return code: 139 794s OKs: 0 794s Standard error: 794s Segmentation fault (core dumped) 796s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 796s 139 796s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 796s libtbx.python "/usr/lib/python3/dist-packages/scitbx/examples/lbfgs_linear_least_squares_fit.py" [FAIL] 3.2s 796s Time: 3.23 796s Return code: 139 796s OKs: 0 796s Standard error: 796s Segmentation fault (core dumped) 798s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 798s 139 798s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 798s libtbx.python "/usr/lib/python3/dist-packages/scitbx/examples/chebyshev_lsq_example.py" [FAIL] 3.9s 798s Time: 3.88 798s Return code: 139 798s OKs: 0 798s Standard error: 798s Segmentation fault (core dumped) 798s libtbx.python "/usr/lib/python3/dist-packages/scitbx/examples/rigid_body_refinement_core.py" [OK] 0.1s 798s Time: 0.10 798s Return code: 0 798s OKs: 1 798s Standard out: 798s an ea: [0.0, 0.0, 0.0] 798s fd ea: [2.9856131013692537e-15, 8.482502921596884e-16, 3.956636706594845e-15] 798s an lt: [-0.0, -0.0, -0.0] 798s fd lt: [0.0, 0.0, 0.0] 798s 798s an ea: [1.4293798315070272, -4.7699199336056015, -3.2848275925325994] 798s fd ea: [1.4293798322739804, -4.769919932368083, -3.284827593041939] 798s an lt: [-2.6395370381698946, 3.8546779254822816, -3.7648774634679576] 798s fd lt: [-2.6395370364973303, 3.8546779261849906, -3.764877463563465] 798s 798s an ea: [-4.386454471339835, 2.1848899436111178, 5.0802158076235635] 798s fd ea: [-4.386454468985335, 2.184889945411328, 5.080215810693289] 798s an lt: [-4.688132824683539, -10.874759921610867, -1.9393316543209416] 798s fd lt: [-4.688132825947378, -10.874759922785415, -1.939331655265164] 798s 798s an ea: [-5.097458993694191, 2.0225151159319297, 4.479103261227751] 798s fd ea: [-5.097458993574833, 2.0225151207142744, 4.479103258958617] 798s an lt: [-2.8154365578392593, -5.157085781215166, -17.014046644874668] 798s fd lt: [-2.8154365576682494, -5.157085780638226, -17.014046648000658] 798s 798s OK 800s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 800s 139 800s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 800s libtbx.python "/usr/lib/python3/dist-packages/scitbx/examples/immoptibox_ports.py" [FAIL] 4.2s 800s Time: 4.21 800s Return code: 139 800s OKs: 0 800s Standard error: 800s Segmentation fault (core dumped) 802s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 802s 139 802s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 802s libtbx.python "/usr/lib/python3/dist-packages/scitbx/examples/integrating_a_weighted_sinc_function.py" [FAIL] 4.1s 802s Time: 4.10 802s Return code: 139 802s OKs: 0 802s Standard error: 802s Segmentation fault (core dumped) 802s libtbx.python "/usr/lib/python3/dist-packages/scitbx/graph/tst_utils.py" [OK] 0.0s 802s Time: 0.02 802s Return code: 0 802s OKs: 1 802s Standard out: 802s OK 802s libtbx.python "/usr/lib/python3/dist-packages/scitbx/graph/rigidity.py" [OK] 0.0s 802s Time: 0.02 802s Return code: 0 802s OKs: 0 802s Standard out: 802s double banana 3D dof (method=integer): 7 802s double banana 3D dof (method=float): 7 802s libtbx.python "/usr/lib/python3/dist-packages/scitbx/graph/tst_rigidity.py" [OK] 0.2s 802s Time: 0.20 802s Return code: 0 802s OKs: 0 802s Standard out: 802s repeat_log = {0: 85} 802s u+s,u,s: 0.18 0.18 0.00 802s libtbx.python "/usr/lib/python3/dist-packages/scitbx/graph/rigidity_matrix_symbolic.py" [OK] 0.2s 802s Time: 0.18 802s Return code: 0 802s OKs: 0 802s Standard out: 802s u+s,u,s: 0.16 0.16 0.00 804s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 804s 139 804s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 804s libtbx.python "/usr/lib/python3/dist-packages/scitbx/examples/minimizer_comparisons.py" [FAIL] 4.1s 804s Time: 4.07 804s Return code: 139 804s OKs: 0 804s Standard error: 804s Segmentation fault (core dumped) 804s libtbx.python "/usr/lib/python3/dist-packages/scitbx/graph/tst_tardy_tree_find_paths.py" [OK] 2.0s 804s Time: 1.95 804s Return code: 0 804s OKs: 1 804s Standard out: 804s OK 804s libtbx.python "/usr/lib/python3/dist-packages/scitbx/graph/test_cases_tardy_pdb.py" [OK] 0.0s 804s Time: 0.04 804s Return code: 0 804s OKs: 0 807s Standard error: 807s Segmentation fault (core dumped) 807s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 807s 139 807s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 807s libtbx.python "/usr/lib/python3/dist-packages/scitbx/graph/tst_tardy_tree.py" [FAIL] 2.5s 807s Time: 2.55 807s Return code: 139 807s OKs: 0 809s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 809s 139 809s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 809s libtbx.python "/usr/lib/python3/dist-packages/scitbx/rigid_body/essence/tst_basic.py" [FAIL] 4.4s 809s Standard error: 809s Segmentation fault (core dumped) 809s Time: 4.37 809s Return code: 139 809s OKs: 0 811s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 811s 139 811s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 811s libtbx.python "/usr/lib/python3/dist-packages/scitbx/rigid_body/essence/tst_tardy.py" [FAIL] 4.4s 811s Time: 4.36 811s Return code: 139 811s OKs: 0 811s Standard error: 811s Segmentation fault (core dumped) 813s Standard error: 813s Segmentation fault (core dumped) 813s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 813s 139 813s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 813s libtbx.python "/usr/lib/python3/dist-packages/scitbx/rigid_body/essence/tst_energy_plots.py" [FAIL] 4.3s 813s Time: 4.33 813s Return code: 139 813s OKs: 0 813s libtbx.python "/usr/lib/python3/dist-packages/scitbx/rigid_body/proto/free_motion_reference_impl.py" [OK] 0.0s 813s Time: 0.03 813s Return code: 0 813s OKs: 1 813s Standard out: 813s e_kin tot ang lin: 0.04066059413038476 0.012310594130384761 0.02835 813s e_pot: 0.6403087877704161 813s e_tot: 0.6809693819008009 813s ang acc 3D: (0.4499405243671747, -0.22736369685250066, -0.6859763000328927) 813s lin acc 3D: (0.2108121283092794, 0.3044814367238479, -0.7824311428947446) 813s 813s e_kin tot ang lin: 0.043334386720177365 0.012335145793951681 0.030999240926225684 813s e_pot: 0.6375204431681878 813s e_tot: 0.6808548298883652 813s ang acc 3D: (0.4491523283824315, -0.2233952828755118, -0.688364609039924) 813s lin acc 3D: (0.2063305410676703, 0.3022012812609254, -0.7827791077048256) 813s 813s e_kin tot ang lin: 0.04624491637806352 0.012390841212545118 0.0338540751655184 813s e_pot: 0.6344966498401754 813s e_tot: 0.6807415662182389 813s ang acc 3D: (0.4482905223840879, -0.2193464063160701, -0.6906197519803725) 813s lin acc 3D: (0.20168867739512958, 0.299808900299363, -0.7830079270607541) 813s 813s e_kin tot ang lin: 0.049389854602061224 0.01247763222642335 0.036912222375637876 813s e_pot: 0.6312398275384674 813s e_tot: 0.6806296821405287 813s ang acc 3D: (0.44735466644443667, -0.21521902126722914, -0.692740958483326) 813s lin acc 3D: (0.19688964121862268, 0.29730414639378616, -0.7831155604559972) 813s 813s e_kin tot ang lin: 0.05276668787891577 0.012595448079626585 0.04017123979928919 813s e_pot: 0.6277525800757479 813s e_tot: 0.6805192679546637 813s ang acc 3D: (0.4463443200247767, -0.2110151239756078, -0.694727476553102) 813s lin acc 3D: (0.1919366941490876, 0.29468687861617315, -0.783099948460292) 813s 813s e_kin tot ang lin: 0.05637271969939971 0.012744195480724368 0.043628524218675344 813s e_pot: 0.6240376932449352 813s e_tot: 0.6804104129443349 813s ang acc 3D: (0.4452590426839754, -0.2067367517215091, -0.6965785731789051) 813s lin acc 3D: (0.18683325327725137, 0.29195696483157874, -0.7829590159403469) 813s 813s e_kin tot ang lin: 0.060205072713709167 0.012923758676161239 0.04728131403754793 813s e_pot: 0.6200981325993219 813s e_tot: 0.680303205313031 813s ang acc 3D: (0.44409839480429714, -0.20238598167333133, -0.6982935349568492) 813s lin acc 3D: (0.18158288880693388, 0.2891142841060344, -0.7826906753299725) 813s 813s e_kin tot ang lin: 0.06426069102522652 0.013133999536143382 0.051126691489083144 813s e_pot: 0.6159370410950341 813s e_tot: 0.6801977321202606 813s ang acc 3D: (0.4428619383337592, -0.1979649297164907, -0.6998716687235316) 813s lin acc 3D: (0.17618932152521946, 0.2861587292410898, -0.7822928299444691) 813s 813s e_kin tot ang lin: 0.06853634262082685 0.013374757653013635 0.05516158496781321 813s e_pot: 0.6115577365976127 813s e_tot: 0.6800940792184396 813s ang acc 3D: (0.4415492375442347, -0.1934757492571058, -0.7013123022002559) 813s lin acc 3D: (0.17065642010895676, 0.2830902094290727, -0.7817633773339945) 813s 813s e_kin tot ang lin: 0.07302862193581516 0.013645850452066947 0.059382771483748216 813s e_pot: 0.6069637092547071 813s e_tot: 0.6799923311905223 813s ang acc 3D: (0.44015985980451133, -0.18892063000069204, -0.702614784647033) 813s lin acc 3D: (0.16498819826718966, 0.2799086530227533, -0.7811002126706817) 813s 813s OK 815s Standard error: 815s Segmentation fault (core dumped) 815s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 815s 139 815s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 815s libtbx.python "/usr/lib/python3/dist-packages/scitbx/rigid_body/tst.py" [FAIL] 4.3s 815s Time: 4.26 815s Return code: 139 815s OKs: 0 818s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 818s 139 818s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 818s libtbx.python "/usr/lib/python3/dist-packages/scitbx/rigid_body/proto/tst_featherstone.py" [FAIL] 4.3s 818s Time: 4.31 818s Return code: 139 818s OKs: 0 818s Standard error: 818s Segmentation fault (core dumped) 820s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 820s 139 820s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 820s libtbx.python "/usr/lib/python3/dist-packages/scitbx/rigid_body/proto/tst_free_motion.py" [FAIL] 4.3s 820s Time: 4.32 820s Return code: 139 820s OKs: 0 820s Standard error: 820s Segmentation fault (core dumped) 822s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 822s 139 822s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 822s libtbx.python "/usr/lib/python3/dist-packages/scitbx/rigid_body/proto/tst_free_motion_hard.py" [FAIL] 4.3s 822s Time: 4.29 822s Return code: 139 822s OKs: 0 822s Standard error: 822s Segmentation fault (core dumped) 824s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 824s 139 824s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 824s libtbx.python "/usr/lib/python3/dist-packages/scitbx/rigid_body/proto/tst_joint_lib.py" [FAIL] 4.4s 824s Time: 4.39 824s Return code: 139 824s OKs: 0 824s Standard error: 824s Segmentation fault (core dumped) 824s libtbx.python "/usr/lib/python3/dist-packages/scitbx/rigid_body/proto/tst_spherical_refinement.py" [OK] 0.2s 824s Time: 0.25 824s Return code: 0 824s OKs: 1 824s Standard out: 824s OK 824s usr+sys time: 0.22 seconds 824s wall clock time: 0.23 seconds 826s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 826s 139 826s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 826s libtbx.python "/usr/lib/python3/dist-packages/scitbx/rigid_body/proto/tst_singular.py" [FAIL] 4.4s 826s Time: 4.39 826s Return code: 139 826s OKs: 0 826s Standard error: 826s Segmentation fault (core dumped) 828s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 828s 139 828s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 828s libtbx.python "/usr/lib/python3/dist-packages/scitbx/rigid_body/proto/tst_molecules.py" [FAIL] 4.1s 828s Time: 4.07 828s Return code: 139 828s OKs: 0 828s Standard error: 828s Segmentation fault (core dumped) 831s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 831s 139 831s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 831s libtbx.python "/usr/lib/python3/dist-packages/scitbx/sparse/tests/tst_sparse.py" [FAIL] 4.3s 831s Time: 4.31 831s Return code: 139 831s OKs: 0 831s Standard error: 831s Segmentation fault (core dumped) 833s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 833s 139 833s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 833s libtbx.python "/usr/lib/python3/dist-packages/scitbx/sparse/tests/tst_lu_factorization.py" [FAIL] 4.3s 833s Standard error: 833s Segmentation fault (core dumped) 833s Time: 4.30 833s Return code: 139 833s OKs: 0 835s Standard error: 835s Segmentation fault (core dumped) 835s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 835s 139 835s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 835s libtbx.python "/usr/lib/python3/dist-packages/scitbx/iso_surface/tst_iso_surface.py" [FAIL] 4.3s 835s Time: 4.28 835s Return code: 139 835s OKs: 0 837s Standard error: 837s Segmentation fault (core dumped) 837s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 837s 139 837s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 837s libtbx.python "/usr/lib/python3/dist-packages/scitbx/tests/simplex.py" [FAIL] 4.2s 837s Time: 4.20 837s Return code: 139 837s OKs: 0 837s libtbx.python "/usr/lib/python3/dist-packages/scitbx/tests/golden_section_search.py" [OK] 0.0s 837s Time: 0.02 837s Return code: 0 837s OKs: 0 839s Standard error: 839s Segmentation fault (core dumped) 839s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 839s 139 839s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 839s libtbx.python "/usr/lib/python3/dist-packages/scitbx/tests/differential_evolution.py" [FAIL] 4.0s 839s Time: 3.99 839s Return code: 139 839s OKs: 0 841s Standard error: 841s Segmentation fault (core dumped) 841s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 841s 139 841s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 841s libtbx.python "/usr/lib/python3/dist-packages/scitbx/tests/direct_search_simulated_annealing.py" [FAIL] 3.9s 841s Time: 3.87 841s Return code: 139 841s OKs: 0 843s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 843s 139 843s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 843s libtbx.python "/usr/lib/python3/dist-packages/scitbx/random/tests/tst_random.py" [FAIL] 4.5s 843s Time: 4.48 843s Return code: 139 843s OKs: 0 843s Standard error: 843s Segmentation fault (core dumped) 843s libtbx.python "/usr/lib/python3/dist-packages/scitbx/lstbx/tests/test_problems.py" [OK] 0.1s 843s Time: 0.12 843s Return code: 0 843s OKs: 0 845s libtbx.python "/usr/lib/python3/dist-packages/scitbx/glmtbx/tests/tst.py" [OK] 1.6s 845s Time: 1.57 845s Return code: 0 845s OKs: 2 845s Standard out: 845s OK 845s OK 845s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 845s 139 845s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 845s libtbx.python "/usr/lib/python3/dist-packages/scitbx/lstbx/tests/tst_normal_equations.py" [FAIL] 4.6s 845s Time: 4.63 845s Return code: 139 845s OKs: 0 845s Standard error: 845s Segmentation fault (core dumped) 847s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 847s 139 847s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 847s libtbx.python "/usr/lib/python3/dist-packages/scitbx/dtmin/regression/tst_dtmin_basic.py" [FAIL] 2.4s 847s Time: 2.36 847s Return code: 139 847s OKs: 0 847s Standard error: 847s Segmentation fault (core dumped) 849s Standard error: 849s Segmentation fault (core dumped) 849s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 849s 139 849s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 849s libtbx.python "/usr/lib/python3/dist-packages/scitbx/dtmin/regression/tst_dtmin_booth.py" [FAIL] 3.9s 849s Time: 3.89 849s Return code: 139 849s OKs: 0 849s libtbx.python "/usr/lib/python3/dist-packages/scitbx/suffixtree/test/tst_single.py" [OK] 0.1s 849s Time: 0.05 849s Return code: 0 849s OKs: 0 851s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 851s 139 851s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 851s libtbx.python "/usr/lib/python3/dist-packages/scitbx/dtmin/regression/tst_dtmin_twisted.py" [FAIL] 4.0s 851s Time: 3.99 851s Return code: 139 851s OKs: 0 851s Standard error: 851s Segmentation fault (core dumped) 854s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 854s 139 854s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 854s libtbx.python "/usr/lib/python3/dist-packages/smtbx/absolute_structure/tests/tst_absolute_structure.py" --fix_random_seeds [FAIL] 4.5s 854s Standard error: 854s Segmentation fault (core dumped) 854s Time: 4.51 854s Return code: 139 854s OKs: 0 856s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 856s 139 856s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 856s libtbx.python "/usr/lib/python3/dist-packages/smtbx/ab_initio/tests/tst_ab_initio_ext.py" [FAIL] 4.9s 856s Time: 4.93 856s Return code: 139 856s OKs: 0 856s Standard error: 856s Segmentation fault (core dumped) 859s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 859s 139 859s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 859s libtbx.python "/usr/lib/python3/dist-packages/smtbx/ab_initio/tests/tst_charge_flipping.py" --fix_seed --on=E "hall: P 1" "hall: P 3" "hall: -P 2ybc" [FAIL] 4.8s 859s Time: 4.79 859s Return code: 139 859s OKs: 0 859s Standard error: 859s Segmentation fault (core dumped) 861s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 861s 139 861s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 861s libtbx.python "/usr/lib/python3/dist-packages/smtbx/masks/tests/tst_masks.py" [FAIL] 5.0s 861s Time: 5.02 861s Return code: 139 861s OKs: 0 861s Standard error: 861s Segmentation fault (core dumped) 864s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 864s 139 864s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 864s libtbx.python "/usr/lib/python3/dist-packages/smtbx/structure_factors/direct/tests/tst_standard_xray.py" [FAIL] 5.2s 864s Time: 5.19 864s Return code: 139 864s OKs: 0 864s Standard error: 864s Segmentation fault (core dumped) 866s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 866s 139 866s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 866s libtbx.python "/usr/lib/python3/dist-packages/smtbx/refinement/tests/tst_weighting_schemes.py" --fix_random_seeds [FAIL] 5.1s 866s Time: 5.08 866s Return code: 139 866s OKs: 0 866s Standard error: 866s Segmentation fault (core dumped) 866s "/usr/lib/cctbx/python3.13/smtbx/refinement/constraints/tests/tst_reparametrisation" [OK] 0.0s 866s Time: 0.00 866s Return code: 0 866s OKs: 1 866s Standard out: 866s sizeof(parameter) = 32 866s OK 869s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 869s 139 869s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 869s libtbx.python "/usr/lib/python3/dist-packages/smtbx/refinement/constraints/tests/tst_lbfgs.py" [FAIL] 5.1s 869s Time: 5.07 869s Return code: 139 869s OKs: 0 869s "/usr/lib/cctbx/python3.13/smtbx/refinement/constraints/tests/tst_geometrical_hydrogens" [OK] 0.0s 869s Time: 0.00 869s Return code: 0 869s OKs: 1 869s Standard out: 869s OK 869s Standard error: 869s Segmentation fault (core dumped) 872s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 872s 139 872s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 872s libtbx.python "/usr/lib/python3/dist-packages/smtbx/refinement/constraints/tests/tst_occupancies.py" [FAIL] 5.4s 872s Time: 5.37 872s Return code: 139 872s OKs: 0 872s "/usr/lib/cctbx/python3.13/smtbx/refinement/constraints/tests/tst_special_position" [OK] 0.0s 872s Time: 0.01 872s Return code: 0 872s OKs: 1 872s Standard out: 872s OK 872s Standard error: 872s Segmentation fault (core dumped) 874s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 874s 139 874s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 874s libtbx.python "/usr/lib/python3/dist-packages/smtbx/refinement/constraints/tests/tst_same_group.py" [FAIL] 5.3s 874s Time: 5.32 874s Return code: 139 874s OKs: 0 874s Standard error: 874s Segmentation fault (core dumped) 877s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 877s 139 877s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 877s libtbx.python "/usr/lib/python3/dist-packages/smtbx/refinement/constraints/tests/tst_reparametrisation.py" [FAIL] 5.1s 877s Time: 5.09 877s Return code: 139 877s OKs: 0 877s Standard error: 877s Segmentation fault (core dumped) 879s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 879s 139 879s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 879s libtbx.python "/usr/lib/python3/dist-packages/smtbx/refinement/constraints/tests/tst_constrained_structure.py" --normal_eqns_solving_method=naive [FAIL] 5.2s 879s Time: 5.20 879s Return code: 139 879s OKs: 0 879s Standard error: 879s Segmentation fault (core dumped) 882s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 882s 139 882s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 882s libtbx.python "/usr/lib/python3/dist-packages/smtbx/refinement/constraints/tests/tst_disorder.py" [FAIL] 5.2s 882s Time: 5.24 882s Return code: 139 882s OKs: 0 882s Standard error: 882s Segmentation fault (core dumped) 882s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 882s 139 882s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 882s libtbx.python "/usr/lib/python3/dist-packages/smtbx/refinement/constraints/tests/tst_constrained_structure.py" --normal_eqns_solving_method=levenberg-marquardt [FAIL] 2.6s 882s Time: 2.65 882s Return code: 139 882s OKs: 0 882s Standard error: 882s Segmentation fault (core dumped) 885s Standard error: 885s Segmentation fault (core dumped) 885s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 885s 139 885s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 885s libtbx.python "/usr/lib/python3/dist-packages/smtbx/refinement/constraints/tests/tst_direction.py" [FAIL] 2.8s 885s Time: 2.76 885s Return code: 139 885s OKs: 0 887s Standard error: 887s Segmentation fault (core dumped) 887s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 887s 139 887s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 887s libtbx.python "/usr/lib/python3/dist-packages/smtbx/refinement/constraints/tests/tst_rigid.py" [FAIL] 5.3s 887s Time: 5.30 887s Return code: 139 887s OKs: 0 890s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 890s 139 890s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 890s libtbx.python "/usr/lib/python3/dist-packages/smtbx/refinement/restraints/tests/tst_adp_restraints.py" [FAIL] 5.0s 890s Time: 5.03 890s Return code: 139 890s OKs: 0 890s Standard error: 890s Segmentation fault (core dumped) 892s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 892s 139 892s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 892s libtbx.python "/usr/lib/python3/dist-packages/smtbx/refinement/restraints/tests/tst_manager.py" [FAIL] 5.0s 892s Standard error: 892s Segmentation fault (core dumped) 892s Time: 5.01 892s Return code: 139 892s OKs: 0 895s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 895s 139 895s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 895s libtbx.python "/usr/lib/python3/dist-packages/smtbx/refinement/restraints/tests/tst_restraints.py" --verbose --scatterers=5 --resolution=0.2 [FAIL] 5.1s 895s Time: 5.06 895s Return code: 139 895s OKs: 0 895s Standard error: 895s Segmentation fault (core dumped) 898s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 898s 139 898s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 898s libtbx.python "/usr/lib/python3/dist-packages/smtbx/regression/tst_commandline_refine.py" [FAIL] 5.4s 898s Standard error: 898s Segmentation fault (core dumped) 898s Time: 5.37 898s Return code: 139 898s OKs: 0 902s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 902s 1 902s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 902s libtbx.python "/usr/lib/python3/dist-packages/smtbx/regression/tst_commandline_anomrefine.py" [FAIL] 6.8s 902s Time: 6.79 902s Return code: 1 902s OKs: 0 902s Standard out: 902s smtbx.anom_refine /usr/lib/python3/dist-packages/smtbx/regression/test_data/thpp.cif /usr/lib/python3/dist-packages/smtbx/regression/test_data/thpp.hkl F -e13000 -t -O -d0 -s0 -c25 902s Standard error: 902s Traceback (most recent call last): 902s File "/usr/lib/python3/dist-packages/smtbx/regression/tst_commandline_anomrefine.py", line 37, in 902s run() 902s ~~~^^ 902s File "/usr/lib/python3/dist-packages/smtbx/regression/tst_commandline_anomrefine.py", line 27, in run 902s run_buf.raise_if_errors() 902s ~~~~~~~~~~~~~~~~~~~~~~~^^ 902s File "/usr/lib/python3/dist-packages/libtbx/easy_run.py", line 46, in raise_if_errors 902s raise Error(msg) 902s RuntimeError: child process stderr output: 902s command: 'smtbx.anom_refine /usr/lib/python3/dist-packages/smtbx/regression/test_data/thpp.cif /usr/lib/python3/dist-packages/smtbx/regression/test_data/thpp.hkl F -e13000 -t -O -d0 -s0 -c25' 902s Segmentation fault (core dumped) 903s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 903s 139 903s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 903s libtbx.python "/usr/lib/python3/dist-packages/smtbx/tests/tst_utils.py" [FAIL] 5.3s 903s Time: 5.27 903s Return code: 139 903s OKs: 0 903s Standard error: 903s Segmentation fault (core dumped) 906s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 906s 139 906s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 906s libtbx.python "/usr/lib/python3/dist-packages/smtbx/refinement/tests/tst_least_squares.py" [EXPECTED UNSTABLE] 3.9s 906s Time: 3.93 906s Return code: 139 906s OKs: 0 906s Standard error: 906s Segmentation fault (core dumped) 906s libtbx.python "/usr/lib/python3/dist-packages/rstbx/diffraction/tst_predict.py" [OK] 0.2s 906s Time: 0.16 906s Return code: 0 906s OKs: 1 906s Standard out: 906s OK 906s libtbx.python "/usr/lib/python3/dist-packages/rstbx/diffraction/tst_ewald_sphere.py" [OK] 0.1s 906s Time: 0.14 906s Return code: 0 906s OKs: 1 906s Standard out: 906s OK 906s libtbx.python "/usr/lib/python3/dist-packages/rstbx/diffraction/tst_partial_derivatives.py" [OK] 0.1s 906s Time: 0.12 906s Return code: 0 906s OKs: 1 906s Standard out: 906s OK 908s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 908s 139 908s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 908s libtbx.python "/usr/lib/python3/dist-packages/rstbx/dps_core/tst_iotbx_converter.py" [FAIL] 4.8s 908s Time: 4.83 908s Return code: 139 908s OKs: 0 908s Standard error: 908s Segmentation fault (core dumped) 910s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 910s 139 910s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 910s libtbx.python "/usr/lib/python3/dist-packages/rstbx/diffraction/fastbragg/tst_bragg_minimal.py" [FAIL] 4.3s 910s Time: 4.31 910s Return code: 139 910s OKs: 0 910s Standard error: 910s Segmentation fault (core dumped) 913s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 913s 139 913s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 913s libtbx.python "/usr/lib/python3/dist-packages/rstbx/sublattice_support/tst_sublattice.py" [FAIL] 4.8s 913s Time: 4.78 913s Return code: 139 913s OKs: 0 913s Standard error: 913s Segmentation fault (core dumped) 913s libtbx.python "/usr/lib/python3/dist-packages/spotfinder/core_toolbox/boost_python/tst_small_image.py" [OK] 0.5s 913s Time: 0.45 913s Return code: 0 913s OKs: 1 913s Standard out: 913s OK 913s libtbx.python "/usr/lib/python3/dist-packages/spotfinder/diffraction/geometry.py" [OK] 0.2s 913s Time: 0.17 913s Return code: 0 913s OKs: 1 913s Standard out: 913s OK 913s libtbx.python "/usr/lib/python3/dist-packages/spotfinder/math_support/sphere_formulae.py" [OK] 0.0s 913s Time: 0.03 913s Return code: 0 913s OKs: 1 913s Standard out: 913s OK 914s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 914s 139 914s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 914s libtbx.python -c "from rstbx.run_tests import run; run()" [FAIL] 3.7s 914s Time: 3.71 914s Return code: 139 914s OKs: 0 914s Standard error: 914s Segmentation fault (core dumped) 914s ================================================================================ 914s 914s Tests finished. Elapsed time: 764.39s 914s 914s Distribution of test runtimes: 914s 0.0s - 6.9s: 537 914s 6.9s - 13.7s: 7 914s 13.7s - 20.6s: 0 914s 20.6s - 27.4s: 1 914s 27.4s - 34.3s: 0 914s 34.3s - 41.1s: 0 914s 41.1s - 48.0s: 0 914s 48.0s - 54.8s: 0 914s 54.8s - 61.7s: 0 914s 61.7s - 68.5s: 1 914s 914s 914s Warning: the following are 5 longest jobs: 914s libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_fetch.py": 68.5s 914s libtbx.python "/usr/lib/python3/dist-packages/libtbx/tst_thread_utils.py": 24.1s 914s libtbx.python "/usr/lib/python3/dist-packages/scitbx/array_family/boost_python/tst_integer_offsets_vs_pointers.py": 13.7s 914s libtbx.python "/usr/lib/python3/dist-packages/scitbx/math/tst_zernike.py": 10.8s 914s libtbx.python "/usr/lib/python3/dist-packages/fable/test/tst_separate_files.py": 8.7s 914s Please try to reduce overall runtime - consider splitting up these tests. 914s 914s 914s Error: the following jobs returned non-zero exit codes or suspicious stderr output: 914s 914s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_sf_low_res_accuracy.py" [FAIL] 2.7s 914s Time: 2.67 914s Return code: 139 914s OKs: 0 914s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_miller_double_step_filtration.py" [FAIL] 3.7s 914s Time: 3.69 914s Return code: 139 914s OKs: 0 914s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_map_is_periodic.py" [FAIL] 4.8s 914s Time: 4.79 914s Return code: 139 914s OKs: 0 914s libtbx.python "/usr/lib/python3/dist-packages/cctbx/miller/tst_reindexing.py" [FAIL] 4.7s 914s Time: 4.66 914s Return code: 139 914s OKs: 0 914s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_miller_data_manipulation.py" [FAIL] 4.4s 914s Time: 4.37 914s Return code: 139 914s OKs: 0 914s libtbx.python "/usr/lib/python3/dist-packages/cctbx/omz/tst_bfgs.py" [FAIL] 4.4s 914s Time: 4.39 914s Return code: 139 914s OKs: 0 914s libtbx.python "/usr/lib/python3/dist-packages/cctbx/omz/tst_dev.py" P31 [FAIL] 4.4s 914s Time: 4.44 914s Return code: 139 914s OKs: 0 914s libtbx.python "/usr/lib/python3/dist-packages/cctbx/geometry/tests/tst_geometry.py" [FAIL] 4.7s 914s Time: 4.75 914s Return code: 139 914s OKs: 0 914s libtbx.python "/usr/lib/python3/dist-packages/cctbx/covariance/tests/tst_covariance.py" [FAIL] 4.7s 914s Time: 4.71 914s Return code: 139 914s OKs: 0 914s libtbx.python "/usr/lib/python3/dist-packages/cctbx/symmetry_search/tests/tst_goodness_of_symmetry.py" [FAIL] 4.7s 914s Time: 4.67 914s Return code: 139 914s OKs: 0 914s libtbx.python "/usr/lib/python3/dist-packages/cctbx/symmetry_search/tests/tst_from_map.py" P312 [FAIL] 4.7s 914s Time: 4.69 914s Return code: 139 914s OKs: 0 914s libtbx.python "/usr/lib/python3/dist-packages/cctbx/xray/boost_python/tst_xray.py" [FAIL] 4.5s 914s Time: 4.46 914s Return code: 139 914s OKs: 0 914s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_xray.py" I41/acd [FAIL] 5.2s 914s Time: 5.19 914s Return code: 139 914s OKs: 0 914s libtbx.python "/usr/lib/python3/dist-packages/cctbx/xray/targets/tst_r1.py" [FAIL] 4.9s 914s Time: 4.93 914s Return code: 139 914s OKs: 0 914s libtbx.python "/usr/lib/python3/dist-packages/cctbx/xray/targets/tst_shelxl_wght_ls.py" [FAIL] 4.7s 914s Time: 4.71 914s Return code: 139 914s OKs: 0 914s libtbx.python "/usr/lib/python3/dist-packages/cctbx/xray/boost_python/tst_f_model.py" [FAIL] 4.7s 914s Time: 4.73 914s Return code: 139 914s OKs: 0 914s libtbx.python "/usr/lib/python3/dist-packages/cctbx/array_family/boost_python/tst_flex.py" [FAIL] 4.8s 914s Time: 4.83 914s Return code: 139 914s OKs: 0 914s libtbx.python "/usr/lib/python3/dist-packages/cctbx/uctbx/boost_python/tst_uctbx.py" [FAIL] 4.7s 914s Time: 4.73 914s Return code: 139 914s OKs: 0 914s libtbx.python "/usr/lib/python3/dist-packages/cctbx/uctbx/boost_python/tst_crystal_orientation.py" [FAIL] 4.4s 914s Time: 4.44 914s Return code: 139 914s OKs: 0 914s libtbx.python "/usr/lib/python3/dist-packages/cctbx/sgtbx/boost_python/tst_sgtbx.py" [FAIL] 4.7s 914s Time: 4.74 914s Return code: 139 914s OKs: 0 914s libtbx.python "/usr/lib/python3/dist-packages/cctbx/crystal/tst_ext.py" [FAIL] 5.0s 914s Time: 5.01 914s Return code: 139 914s OKs: 0 914s libtbx.python "/usr/lib/python3/dist-packages/cctbx/crystal/tst_distance_based_connectivity.py" [FAIL] 4.8s 914s Time: 4.76 914s Return code: 139 914s OKs: 0 914s libtbx.python "/usr/lib/python3/dist-packages/cctbx/crystal/tst_super_cell.py" [FAIL] 5.7s 914s Time: 5.69 914s Return code: 139 914s OKs: 0 914s libtbx.python "/usr/lib/python3/dist-packages/cctbx/adptbx/boost_python/tst_adptbx.py" [FAIL] 6.0s 914s Time: 6.03 914s Return code: 139 914s OKs: 0 914s libtbx.python "/usr/lib/python3/dist-packages/cctbx/miller/boost_python/tst_miller.py" [FAIL] 5.0s 914s Time: 5.01 914s Return code: 139 914s OKs: 0 914s libtbx.python "/usr/lib/python3/dist-packages/cctbx/eltbx/tests/tst_xray_scattering.py" [FAIL] 4.6s 914s Time: 4.64 914s Return code: 139 914s OKs: 0 914s libtbx.python "/usr/lib/python3/dist-packages/cctbx/eltbx/tests/tst_formula.py" [FAIL] 3.9s 914s Time: 3.91 914s Return code: 139 914s OKs: 0 914s libtbx.python "/usr/lib/python3/dist-packages/cctbx/eltbx/tests/tst_attenuation_coefficient.py" [FAIL] 4.2s 914s Time: 4.19 914s Return code: 139 914s OKs: 0 914s libtbx.python "/usr/lib/python3/dist-packages/cctbx/maptbx/boost_python/tst_maptbx.py" [FAIL] 4.5s 914s Time: 4.54 914s Return code: 139 914s OKs: 0 914s libtbx.python "/usr/lib/python3/dist-packages/cctbx/maptbx/tst_bcr.py" [FAIL] 5.7s 914s Time: 5.68 914s Return code: 139 914s OKs: 0 914s libtbx.python "/usr/lib/python3/dist-packages/cctbx/maptbx/tst_loft.py" [FAIL] 5.7s 914s Time: 5.69 914s Return code: 139 914s OKs: 0 914s libtbx.python "/usr/lib/python3/dist-packages/cctbx/dmtbx/boost_python/tst_dmtbx.py" [FAIL] 4.6s 914s Time: 4.61 914s Return code: 139 914s OKs: 0 914s libtbx.python "/usr/lib/python3/dist-packages/cctbx/translation_search/boost_python/tst_translation_search.py" [FAIL] 4.4s 914s Time: 4.37 914s Return code: 139 914s OKs: 0 914s libtbx.python "/usr/lib/python3/dist-packages/cctbx/geometry_restraints/tst_ext.py" [FAIL] 4.9s 914s Time: 4.87 914s Return code: 139 914s OKs: 0 914s libtbx.python "/usr/lib/python3/dist-packages/cctbx/geometry_restraints/tst_angle_derivs.py" [FAIL] 3.8s 914s Time: 3.78 914s Return code: 139 914s OKs: 0 914s libtbx.python "/usr/lib/python3/dist-packages/cctbx/adp_restraints/tst_ext.py" [FAIL] 4.6s 914s Time: 4.59 914s Return code: 139 914s OKs: 0 914s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_krivy_gruber.py" --Quick [FAIL] 4.7s 914s Time: 4.67 914s Return code: 139 914s OKs: 0 914s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_sgtbx.py" [FAIL] 4.5s 914s Time: 4.47 914s Return code: 139 914s OKs: 0 914s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_space_group_type_tidy_cb_op_t.py" [FAIL] 4.3s 914s Time: 4.26 914s Return code: 139 914s OKs: 0 914s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_sgtbx_denominators.py" P31 [FAIL] 4.2s 914s Time: 4.23 914s Return code: 139 914s OKs: 0 914s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_sgtbx_subgroups.py" [FAIL] 4.2s 914s Time: 4.20 914s Return code: 139 914s OKs: 0 914s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_sgtbx_lattice_symmetry.py" [FAIL] 4.2s 914s Time: 4.24 914s Return code: 139 914s OKs: 0 914s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_adp_constraints.py" P3 [FAIL] 4.4s 914s Time: 4.44 914s Return code: 139 914s OKs: 0 914s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_adp_constraints_cartesian.py" [FAIL] 4.5s 914s Time: 4.48 914s Return code: 139 914s OKs: 0 914s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_reflection_statistics.py" [FAIL] 4.3s 914s Time: 4.29 914s Return code: 139 914s OKs: 0 914s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_sgtbx_harker.py" [FAIL] 4.6s 914s Time: 4.60 914s Return code: 139 914s OKs: 0 914s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_sgtbx_special_op_simplifier.py" [FAIL] 4.6s 914s Time: 4.59 914s Return code: 139 914s OKs: 0 914s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_twin_target.py" [FAIL] 4.8s 914s Time: 4.77 914s Return code: 139 914s OKs: 0 914s libtbx.python "/usr/lib/python3/dist-packages/cctbx/sgtbx/symbol_confidence.py" [FAIL] 4.5s 914s Time: 4.51 914s Return code: 139 914s OKs: 0 914s libtbx.python "/usr/lib/python3/dist-packages/cctbx/sgtbx/bravais_types.py" [FAIL] 4.2s 914s Time: 4.22 914s Return code: 139 914s OKs: 0 914s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_miller_lookup_utils.py" [FAIL] 4.5s 914s Time: 4.45 914s Return code: 139 914s OKs: 0 914s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_crystal.py" I41/acd [FAIL] 4.7s 914s Time: 4.74 914s Return code: 139 914s OKs: 0 914s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_direct_space_asu.py" I41/acd [FAIL] 4.8s 914s Time: 4.79 914s Return code: 139 914s OKs: 0 914s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_pair_asu_table.py" [FAIL] 4.8s 914s Time: 4.85 914s Return code: 139 914s OKs: 0 914s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_crystal_asu_clusters.py" [FAIL] 4.6s 914s Time: 4.62 914s Return code: 139 914s OKs: 0 914s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_crystal_close_packing.py" R-3mr [FAIL] 4.4s 914s Time: 4.42 914s Return code: 139 914s OKs: 0 914s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_fourier_transform_real_part_at_x.py" P31 [FAIL] 4.6s 914s Time: 4.61 914s Return code: 139 914s OKs: 0 914s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_miller.py" P31 [FAIL] 4.9s 914s Time: 4.87 914s Return code: 139 914s OKs: 0 914s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_mem.py" [FAIL] 5.2s 914s Time: 5.19 914s Return code: 139 914s OKs: 0 914s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_reciprocal_space_asu.py" P312 [FAIL] 4.5s 914s Time: 4.53 914s Return code: 139 914s OKs: 0 914s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_triplet_generator.py" P41 [FAIL] 4.7s 914s Time: 4.65 914s Return code: 139 914s OKs: 0 914s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_emma.py" P31 [FAIL] 5.1s 914s Time: 5.06 914s Return code: 139 914s OKs: 0 914s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_expand_to_p1.py" P31 [FAIL] 5.0s 914s Time: 5.04 914s Return code: 139 914s OKs: 0 914s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_change_basis.py" P31 [FAIL] 4.7s 914s Time: 4.72 914s Return code: 139 914s OKs: 0 914s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_wilson_plot.py" P31 [FAIL] 4.7s 914s Time: 4.73 914s Return code: 139 914s OKs: 0 914s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_xray_derivatives.py" P31 [FAIL] 4.7s 914s Time: 4.71 914s Return code: 139 914s OKs: 0 914s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_xray_fast_gradients.py" P31 [FAIL] 4.9s 914s Time: 4.85 914s Return code: 139 914s OKs: 0 914s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_xray_minimization.py" --F P31 [FAIL] 4.8s 914s Time: 4.83 914s Return code: 139 914s OKs: 0 914s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_xray_minimization.py" --F_sq P31 [FAIL] 2.4s 914s Time: 2.38 914s Return code: 139 914s OKs: 0 914s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_map_weights_for_symmetry_summation.py" Pmmm [FAIL] 2.5s 914s Time: 2.51 914s Return code: 139 914s OKs: 0 914s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_maptbx_structure_factors.py" P31 [FAIL] 4.9s 914s Time: 4.92 914s Return code: 139 914s OKs: 0 914s libtbx.python "/usr/lib/python3/dist-packages/cctbx/maptbx/tst_real_space_refinement_simple.py" [FAIL] 4.9s 914s Time: 4.90 914s Return code: 139 914s OKs: 0 914s libtbx.python "/usr/lib/python3/dist-packages/cctbx/maptbx/tst_interpolation.py" [FAIL] 4.8s 914s Time: 4.76 914s Return code: 139 914s OKs: 0 914s libtbx.python "/usr/lib/python3/dist-packages/cctbx/maptbx/tst_interpolation_2.py" [FAIL] 4.6s 914s Time: 4.61 914s Return code: 139 914s OKs: 0 914s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_loc_res.py" [FAIL] 5.7s 914s Time: 5.74 914s Return code: 139 914s OKs: 0 914s libtbx.python "/usr/lib/python3/dist-packages/cctbx/maptbx/tst_target_and_gradients.py" [FAIL] 5.7s 914s Time: 5.75 914s Return code: 139 914s OKs: 0 914s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_miller_merge_equivalents.py" P31 [FAIL] 4.7s 914s Time: 4.70 914s Return code: 139 914s OKs: 0 914s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_grouped_data.py" P31 [FAIL] 4.7s 914s Time: 4.67 914s Return code: 139 914s OKs: 0 914s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_miller_fft_map.py" P31 [FAIL] 4.7s 914s Time: 4.68 914s Return code: 139 914s OKs: 0 914s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_sampled_model_density.py" P31 [FAIL] 4.7s 914s Time: 4.73 914s Return code: 139 914s OKs: 0 914s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_fast_nv1995.py" F222 [FAIL] 4.8s 914s Time: 4.75 914s Return code: 139 914s OKs: 0 914s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_geometry_restraints_lbfgs.py" [FAIL] 4.5s 914s Time: 4.47 914s Return code: 139 914s OKs: 0 914s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_geometry_restraints_2.py" [FAIL] 5.5s 914s Time: 5.47 914s Return code: 139 914s OKs: 0 914s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_french_wilson.py" [FAIL] 5.0s 914s Time: 4.97 914s Return code: 139 914s OKs: 0 914s libtbx.python "/usr/lib/python3/dist-packages/cctbx/development/make_cns_input.py" P31 [FAIL] 4.7s 914s Time: 4.73 914s Return code: 139 914s OKs: 0 914s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_pointgroup_tools.py" [FAIL] 4.2s 914s Time: 4.18 914s Return code: 139 914s OKs: 0 914s libtbx.python "/usr/lib/python3/dist-packages/cctbx/sgtbx/sub_lattice_tools.py" [FAIL] 4.6s 914s Time: 4.57 914s Return code: 139 914s OKs: 0 914s libtbx.python "/usr/lib/python3/dist-packages/cctbx/sgtbx/rational_matrices_point_groups.py" [FAIL] 4.5s 914s Time: 4.50 914s Return code: 139 914s OKs: 0 914s libtbx.python "/usr/lib/python3/dist-packages/cctbx/sgtbx/cosets.py" [FAIL] 4.5s 914s Time: 4.49 914s Return code: 139 914s OKs: 0 914s libtbx.python "/usr/lib/python3/dist-packages/cctbx/sgtbx/reticular_pg_tools.py" [FAIL] 4.5s 914s Time: 4.50 914s Return code: 139 914s OKs: 0 914s libtbx.python "/usr/lib/python3/dist-packages/cctbx/sgtbx/reticular_twin_laws.py" [FAIL] 4.5s 914s Time: 4.51 914s Return code: 139 914s OKs: 0 914s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_find_best_cell.py" [FAIL] 4.4s 914s Time: 4.44 914s Return code: 139 914s OKs: 0 914s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_amplitude_normalisation.py" [FAIL] 4.5s 914s Time: 4.47 914s Return code: 139 914s OKs: 0 914s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_statistics_graphs.py" [FAIL] 4.7s 914s Time: 4.67 914s Return code: 139 914s OKs: 0 914s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_web_change_basis.py" [FAIL] 4.5s 914s Time: 4.51 914s Return code: 139 914s OKs: 0 914s libtbx.python "/usr/lib/python3/dist-packages/cctbx/sgtbx/direct_space_asu/proto/tst_asu.py" [FAIL] 4.4s 914s Time: 4.37 914s Return code: 139 914s OKs: 0 914s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_sgtbx_tidy_pickling.py" [FAIL] 4.6s 914s Time: 4.57 914s Return code: 139 914s OKs: 0 914s libtbx.python "/usr/lib/python3/dist-packages/cctbx/masks/tests/tst_flood_fill.py" [FAIL] 4.6s 914s Time: 4.58 914s Return code: 139 914s OKs: 0 914s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_r_free_utils.py" [FAIL] 4.6s 914s Time: 4.64 914s Return code: 139 914s OKs: 0 914s libtbx.python "/usr/lib/python3/dist-packages/cctbx/maptbx/tst_ccp.py" [FAIL] 4.7s 914s Time: 4.69 914s Return code: 139 914s OKs: 0 914s libtbx.python "/usr/lib/python3/dist-packages/cctbx/maptbx/tst_mask.py" [FAIL] 4.9s 914s Time: 4.93 914s Return code: 139 914s OKs: 0 914s libtbx.python "/usr/lib/python3/dist-packages/cctbx/maptbx/tst_map_peak_3d_as_2d.py" [FAIL] 4.9s 914s Time: 4.91 914s Return code: 139 914s OKs: 0 914s libtbx.python "/usr/lib/python3/dist-packages/cctbx/maptbx/tst_asymmetric_map.py" [FAIL] 4.8s 914s Time: 4.81 914s Return code: 139 914s OKs: 0 914s libtbx.python "/usr/lib/python3/dist-packages/cctbx/maptbx/tst_peak_volume_estimate.py" [FAIL] 4.7s 914s Time: 4.71 914s Return code: 139 914s OKs: 0 914s libtbx.python "/usr/lib/python3/dist-packages/cctbx/maptbx/tst_resolution_from_map_and_model.py" [FAIL] 4.8s 914s Time: 4.78 914s Return code: 139 914s OKs: 0 914s libtbx.python "/usr/lib/python3/dist-packages/cctbx/maptbx/tst_atom_curves.py" [FAIL] 4.7s 914s Time: 4.74 914s Return code: 139 914s OKs: 0 914s libtbx.python "/usr/lib/python3/dist-packages/cctbx/maptbx/tst_atom_radius_as_central_peak_width.py" [FAIL] 4.8s 914s Time: 4.82 914s Return code: 139 914s OKs: 0 914s libtbx.python "/usr/lib/python3/dist-packages/cctbx/maptbx/tst_get_percentile_cutoffs.py" [FAIL] 5.0s 914s Time: 4.96 914s Return code: 139 914s OKs: 0 914s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_sphericity.py" [FAIL] 3.9s 914s Time: 3.92 914s Return code: 139 914s OKs: 0 914s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_miller_statistics.py" [FAIL] 4.8s 914s Time: 4.85 914s Return code: 139 914s OKs: 0 914s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_connectivity.py" [FAIL] 4.6s 914s Time: 4.64 914s Return code: 139 914s OKs: 0 914s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_connectivity_allsym.py" [FAIL] 4.9s 914s Time: 4.90 914s Return code: 139 914s OKs: 0 914s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_diffuse.py" [FAIL] 6.1s 914s Time: 6.07 914s Return code: 1 914s OKs: 0 914s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_prepare_map_for_docking.py" [FAIL] 5.4s 914s Time: 5.42 914s Return code: 139 914s OKs: 0 914s libtbx.python "/usr/lib/python3/dist-packages/cma_es/tst_cma_es.py" [FAIL] 4.5s 914s Time: 4.48 914s Return code: 139 914s OKs: 0 914s libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_mrc_io.py" [FAIL] 2.5s 914s Time: 2.49 914s Return code: 139 914s OKs: 0 914s libtbx.python "/usr/lib/python3/dist-packages/iotbx/gui_tools/tst.py" [FAIL] 2.8s 914s Time: 2.79 914s Return code: 139 914s OKs: 0 914s libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_phil.py" [FAIL] 3.5s 914s Time: 3.52 914s Return code: 139 914s OKs: 0 914s libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_data_manager.py" [FAIL] 5.6s 914s Time: 5.60 914s Return code: 139 914s OKs: 0 914s libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_map_manager_wrapping.py" [FAIL] 6.1s 914s Time: 6.07 914s Return code: 139 914s OKs: 0 914s libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_map_manager.py" [FAIL] 4.9s 914s Time: 4.91 914s Return code: 139 914s OKs: 0 914s libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_map_model_manager_9_remove_origin_shift_and_unit_cell_crystal_symmetry.py" [FAIL] 4.0s 914s Time: 4.00 914s Return code: 139 914s OKs: 0 914s libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_map_model_manager_9_remove_origin_shift_and_unit_cell_crystal_symmetry_cif.py" [FAIL] 7.0s 914s Time: 7.05 914s Return code: 139 914s OKs: 0 914s libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_map_tools.py" [FAIL] 5.5s 914s Time: 5.47 914s Return code: 139 914s OKs: 0 914s libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_atom_selections_10k.py" [FAIL] 4.7s 914s Time: 4.67 914s Return code: 139 914s OKs: 0 914s libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_crystal_symmetry_from_any.py" [FAIL] 5.1s 914s Time: 5.08 914s Return code: 139 914s OKs: 0 914s libtbx.python "/usr/lib/python3/dist-packages/iotbx/kriber/tst_strudat.py" [FAIL] 4.9s 914s Time: 4.95 914s Return code: 139 914s OKs: 0 914s libtbx.python "/usr/lib/python3/dist-packages/iotbx/cif/tests/tst_geometry.py" [FAIL] 4.7s 914s Time: 4.72 914s Return code: 139 914s OKs: 0 914s libtbx.python "/usr/lib/python3/dist-packages/iotbx/cif/tests/tst_lex_parse_build.py" [FAIL] 5.1s 914s Time: 5.09 914s Return code: 139 914s OKs: 0 914s libtbx.python "/usr/lib/python3/dist-packages/iotbx/cif/tests/tst_model.py" [FAIL] 5.1s 914s Time: 5.12 914s Return code: 139 914s OKs: 0 914s libtbx.python "/usr/lib/python3/dist-packages/iotbx/cif/tests/tst_validation.py" [FAIL] 1.4s 914s Time: 1.43 914s Return code: 1 914s OKs: 0 914s libtbx.python "/usr/lib/python3/dist-packages/iotbx/cif/tests/tst_restraints.py" [FAIL] 4.9s 914s Time: 4.90 914s Return code: 139 914s OKs: 0 914s libtbx.python "/usr/lib/python3/dist-packages/iotbx/shelx/tst_lex_parse_build.py" [FAIL] 3.1s 914s Time: 3.11 914s Return code: 139 914s OKs: 0 914s libtbx.python "/usr/lib/python3/dist-packages/iotbx/shelx/tst_hklf.py" [FAIL] 5.0s 914s Time: 5.03 914s Return code: 139 914s OKs: 0 914s libtbx.python "/usr/lib/python3/dist-packages/iotbx/shelx/tst_writer.py" [FAIL] 4.8s 914s Time: 4.80 914s Return code: 139 914s OKs: 0 914s libtbx.python "/usr/lib/python3/dist-packages/iotbx/shelx/tst_fvar_encoding.py" [FAIL] 4.7s 914s Time: 4.74 914s Return code: 139 914s OKs: 0 914s libtbx.python "/usr/lib/python3/dist-packages/iotbx/pdb/tst_pdb.py" [FAIL] 5.0s 914s Time: 5.02 914s Return code: 134 914s OKs: 0 914s libtbx.python "/usr/lib/python3/dist-packages/iotbx/pdb/tst_mmcif_hierarchy.py" [FAIL] 6.0s 914s Time: 5.98 914s Return code: 134 914s OKs: 0 914s libtbx.python "/usr/lib/python3/dist-packages/iotbx/pdb/tst_hierarchy.py" [FAIL] 3.4s 914s Time: 3.41 914s Return code: 139 914s OKs: 0 914s libtbx.python "/usr/lib/python3/dist-packages/iotbx/pdb/tst_ext.py" [FAIL] 5.0s 914s Time: 5.03 914s Return code: 139 914s OKs: 0 914s libtbx.python "/usr/lib/python3/dist-packages/iotbx/pdb/tst_atom_selection.py" [FAIL] 5.1s 914s Time: 5.11 914s Return code: 139 914s OKs: 0 914s libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/secondary_structure/tst_annotation.py" [FAIL] 4.6s 914s Time: 4.65 914s Return code: 139 914s OKs: 0 914s libtbx.python "/usr/lib/python3/dist-packages/iotbx/pdb/tst_atom_selection_string.py" [FAIL] 5.1s 914s Time: 5.12 914s Return code: 139 914s OKs: 0 914s libtbx.python "/usr/lib/python3/dist-packages/iotbx/pdb/tst_utils.py" [FAIL] 4.5s 914s Time: 4.51 914s Return code: 139 914s OKs: 0 914s libtbx.python "/usr/lib/python3/dist-packages/iotbx/examples/pdb_truncate_to_ala/tst.py" [FAIL] 2.9s 914s Time: 2.90 914s Return code: 134 914s OKs: 0 914s libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_examples.py" [FAIL] 5.7s 914s Time: 5.70 914s Return code: 139 914s OKs: 0 914s libtbx.python "/usr/lib/python3/dist-packages/iotbx/cns/space_group_symbols.py" [FAIL] 5.5s 914s Time: 5.50 914s Return code: 139 914s OKs: 0 914s libtbx.python "/usr/lib/python3/dist-packages/iotbx/cns/tst_cns.py" [FAIL] 4.5s 914s Time: 4.51 914s Return code: 139 914s OKs: 0 914s libtbx.python "/usr/lib/python3/dist-packages/iotbx/scalepack/tst_merge.py" P31 [FAIL] 4.7s 914s Time: 4.73 914s Return code: 139 914s OKs: 0 914s libtbx.python "/usr/lib/python3/dist-packages/iotbx/scalepack/no_merge_original_index.py" [FAIL] 4.7s 914s Time: 4.69 914s Return code: 139 914s OKs: 0 914s libtbx.python "/usr/lib/python3/dist-packages/iotbx/ccp4_map/tst.py" [FAIL] 4.7s 914s Time: 4.68 914s Return code: 139 914s OKs: 0 914s libtbx.python "/usr/lib/python3/dist-packages/iotbx/mtz/tst_ext.py" [FAIL] 5.3s 914s Time: 5.26 914s Return code: 139 914s OKs: 0 914s libtbx.python "/usr/lib/python3/dist-packages/iotbx/mtz/tst_extract_from_symmetry_lib.py" [FAIL] 5.4s 914s Time: 5.38 914s Return code: 139 914s OKs: 0 914s libtbx.python "/usr/lib/python3/dist-packages/iotbx/mtz/tst_dano.py" [FAIL] 4.8s 914s Time: 4.77 914s Return code: 139 914s OKs: 0 914s libtbx.python "/usr/lib/python3/dist-packages/iotbx/mtz/tst.py" P31 [FAIL] 4.5s 914s Time: 4.46 914s Return code: 139 914s OKs: 0 914s libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_reflection_file_utils.py" [FAIL] 5.2s 914s Time: 5.16 914s Return code: 139 914s OKs: 0 914s libtbx.python "/usr/lib/python3/dist-packages/iotbx/xplor/tst_xplormap.py" [FAIL] 5.0s 914s Time: 5.02 914s Return code: 139 914s OKs: 0 914s libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_phases.py" P31 [FAIL] 4.8s 914s Time: 4.82 914s Return code: 139 914s OKs: 0 914s libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_lattice_symmetry.py" [FAIL] 6.3s 914s Time: 6.30 914s Return code: 1 914s OKs: 0 914s libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_reflection_statistics.py" Fdd2 P31m [FAIL] 5.4s 914s Time: 5.37 914s Return code: 139 914s OKs: 0 914s libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_file_reader.py" [FAIL] 3.9s 914s Time: 3.85 914s Return code: 139 914s OKs: 0 914s libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_box_around_molecule.py" [FAIL] 7.1s 914s Time: 7.13 914s Return code: 1 914s OKs: 0 914s libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_mmcif_segids.py" [FAIL] 5.9s 914s Time: 5.86 914s Return code: 134 914s OKs: 0 914s libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_hierarchy_forward_compatible_pdb.py" [FAIL] 3.5s 914s Time: 3.51 914s Return code: 134 914s OKs: 0 914s libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_symmetry.py" [FAIL] 4.1s 914s Time: 4.05 914s Return code: 139 914s OKs: 0 914s libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_reflection_file_editor.py" [FAIL] 4.6s 914s Time: 4.62 914s Return code: 139 914s OKs: 0 914s libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_split_models.py" [FAIL] 6.2s 914s Time: 6.17 914s Return code: 1 914s OKs: 0 914s libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_simple_map_coefficients.py" [FAIL] 4.3s 914s Time: 4.29 914s Return code: 139 914s OKs: 0 914s libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_sort_atoms.py" [FAIL] 5.7s 914s Time: 5.68 914s Return code: 1 914s OKs: 0 914s libtbx.python "/usr/lib/python3/dist-packages/iotbx/xds/tests/tst_integrate_hkl.py" [FAIL] 5.9s 914s Time: 5.89 914s Return code: 139 914s OKs: 0 914s libtbx.python "/usr/lib/python3/dist-packages/iotbx/scalepack/tst_no_merge_original_index.py" [FAIL] 3.4s 914s Time: 3.38 914s Return code: 139 914s OKs: 0 914s libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_export_scalepack_unmerged.py" [FAIL] 5.0s 914s Time: 4.97 914s Return code: 139 914s OKs: 0 914s libtbx.python "/usr/lib/python3/dist-packages/iotbx/dsn6/tst.py" P31 [FAIL] 5.1s 914s Time: 5.10 914s Return code: 139 914s OKs: 0 914s libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/ncs/tst_ncs_search_ligs.py" [FAIL] 4.3s 914s Time: 4.32 914s Return code: 139 914s OKs: 0 914s libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/ncs/tst_ncs_search_broken_chain.py" [FAIL] 5.2s 914s Time: 5.22 914s Return code: 139 914s OKs: 0 914s libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/ncs/tst_ncs_search_shortcut_1.py" [FAIL] 5.2s 914s Time: 5.22 914s Return code: 139 914s OKs: 0 914s libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/ncs/tst_ncs_groups_preprocessing.py" [FAIL] 6.1s 914s Time: 6.10 914s Return code: 139 914s OKs: 0 914s libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/ncs/tst_ncs_input.py" [FAIL] 6.1s 914s Time: 6.14 914s Return code: 139 914s OKs: 0 914s libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/ncs/tst_ncs_user_selections.py" [FAIL] 5.3s 914s Time: 5.30 914s Return code: 139 914s OKs: 0 914s libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/ncs/tst_ncs.py" [FAIL] 6.1s 914s Time: 6.13 914s Return code: 139 914s OKs: 0 914s libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/ncs/tst_ncs_without_validation.py" [FAIL] 6.1s 914s Time: 6.06 914s Return code: 139 914s OKs: 0 914s libtbx.python "/usr/lib/python3/dist-packages/iotbx/pdb/tst_read_mtrix_records_from_cif.py" [FAIL] 5.9s 914s Time: 5.95 914s Return code: 139 914s OKs: 0 914s libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_show_systematic_absences.py" [FAIL] 6.0s 914s Time: 6.02 914s Return code: 139 914s OKs: 0 914s libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_miller_sort_asu.py" [FAIL] 5.0s 914s Time: 5.00 914s Return code: 139 914s OKs: 0 914s libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_xray_scale.py" [FAIL] 5.4s 914s Time: 5.44 914s Return code: 134 914s OKs: 0 914s libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_cif_as_pdb_1atom.py" [FAIL] 5.7s 914s Time: 5.70 914s Return code: 139 914s OKs: 0 914s libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_cif_1.py" [FAIL] 6.7s 914s Time: 6.68 914s Return code: 139 914s OKs: 0 914s libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_split_data_cif.py" [FAIL] 8.0s 914s Time: 8.03 914s Return code: 1 914s OKs: 0 914s libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_all_chain_ids.py" [FAIL] 6.8s 914s Time: 6.80 914s Return code: 134 914s OKs: 0 914s libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_extract_xtal_data.py" [FAIL] 4.8s 914s Time: 4.85 914s Return code: 139 914s OKs: 0 914s libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_cli_parser.py" [FAIL] 6.3s 914s Time: 6.30 914s Return code: 139 914s OKs: 0 914s libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_hierarchy_occupancies_rounding.py" [FAIL] 5.5s 914s Time: 5.55 914s Return code: 134 914s OKs: 0 914s libtbx.python "/usr/lib/python3/dist-packages/iotbx/detectors/tst_debug_write.py" [FAIL] 2.2s 914s Time: 2.24 914s Return code: 139 914s OKs: 0 914s libtbx.python "/usr/lib/python3/dist-packages/scitbx/tests/tst_smoothing.py" [FAIL] 2.3s 914s Time: 2.31 914s Return code: 139 914s OKs: 0 914s libtbx.python "/usr/lib/python3/dist-packages/scitbx/tests/tst_genetic_algorithm_with_mp.py" [FAIL] 2.2s 914s Time: 2.21 914s Return code: 139 914s OKs: 0 914s libtbx.python "/usr/lib/python3/dist-packages/scitbx/tests/tst_basic.py" [FAIL] 2.5s 914s Time: 2.48 914s Return code: 139 914s OKs: 1 914s libtbx.python "/usr/lib/python3/dist-packages/scitbx/math/tests/tst_minimum_covering_ellipsoid.py" [FAIL] 2.4s 914s Time: 2.36 914s Return code: 139 914s OKs: 0 914s libtbx.python "/usr/lib/python3/dist-packages/scitbx/math/tests/tst_gaussian_fit_1d_analytical.py" [FAIL] 2.3s 914s Time: 2.31 914s Return code: 139 914s OKs: 0 914s libtbx.python "/usr/lib/python3/dist-packages/scitbx/math/tests/tst_cubic_equation.py" [FAIL] 4.3s 914s Time: 4.27 914s Return code: 139 914s OKs: 0 914s libtbx.python "/usr/lib/python3/dist-packages/scitbx/linalg/tests/tst_cholesky.py" [FAIL] 3.8s 914s Time: 3.84 914s Return code: 139 914s OKs: 0 914s libtbx.python "/usr/lib/python3/dist-packages/scitbx/linalg/tests/tst_svd.py" [FAIL] 4.3s 914s Time: 4.27 914s Return code: 139 914s OKs: 0 914s libtbx.python "/usr/lib/python3/dist-packages/scitbx/linalg/tests/tst_eigensystem.py" [FAIL] 4.3s 914s Time: 4.25 914s Return code: 139 914s OKs: 0 914s libtbx.python "/usr/lib/python3/dist-packages/scitbx/linalg/tests/tst_lapack_svd.py" [FAIL] 4.2s 914s Time: 4.21 914s Return code: 139 914s OKs: 0 914s libtbx.python "/usr/lib/python3/dist-packages/scitbx/linalg/tests/tst_lapack_dsyev.py" [FAIL] 4.2s 914s Time: 4.19 914s Return code: 139 914s OKs: 0 914s libtbx.python "/usr/lib/python3/dist-packages/scitbx/array_family/boost_python/regression_test.py" [FAIL] 4.2s 914s Time: 4.16 914s Return code: 139 914s OKs: 0 914s libtbx.python "/usr/lib/python3/dist-packages/scitbx/array_family/boost_python/tst_flex.py" [FAIL] 5.0s 914s Time: 4.95 914s Return code: 139 914s OKs: 0 914s libtbx.python "/usr/lib/python3/dist-packages/scitbx/array_family/boost_python/tst_numpy_bridge.py" [FAIL] 4.8s 914s Time: 4.80 914s Return code: 139 914s OKs: 0 914s libtbx.python "/usr/lib/python3/dist-packages/scitbx/array_family/boost_python/tst_smart_selection.py" [FAIL] 4.2s 914s Time: 4.16 914s Return code: 139 914s OKs: 0 914s libtbx.python "/usr/lib/python3/dist-packages/scitbx/array_family/boost_python/tst_shared.py" [FAIL] 4.2s 914s Time: 4.16 914s Return code: 139 914s OKs: 0 914s libtbx.python "/usr/lib/python3/dist-packages/scitbx/matrix/__init__.py" [FAIL] 2.5s 914s Time: 2.52 914s Return code: 139 914s OKs: 0 914s libtbx.python "/usr/lib/python3/dist-packages/scitbx/python_utils/tst_random_transform.py" [FAIL] 2.4s 914s Time: 2.38 914s Return code: 139 914s OKs: 0 914s libtbx.python "/usr/lib/python3/dist-packages/scitbx/math/superpose.py" [FAIL] 2.2s 914s Time: 2.20 914s Return code: 139 914s OKs: 0 914s libtbx.python "/usr/lib/python3/dist-packages/scitbx/math/spe.py" [FAIL] 2.1s 914s Time: 2.09 914s Return code: 139 914s OKs: 0 914s libtbx.python "/usr/lib/python3/dist-packages/scitbx/math/incremental_SO3_sampling.py" [FAIL] 4.8s 914s Time: 4.80 914s Return code: 139 914s OKs: 0 914s libtbx.python "/usr/lib/python3/dist-packages/scitbx/math/tests/tst_curve_fitting.py" [FAIL] 5.7s 914s Time: 5.70 914s Return code: 139 914s OKs: 0 914s libtbx.python "/usr/lib/python3/dist-packages/scitbx/math/tests/tst_weighted_correlation.py" [FAIL] 4.2s 914s Time: 4.22 914s Return code: 139 914s OKs: 0 914s libtbx.python "/usr/lib/python3/dist-packages/scitbx/math/tests/tst_exp_functions.py" [FAIL] 4.2s 914s Time: 4.24 914s Return code: 139 914s OKs: 0 914s libtbx.python "/usr/lib/python3/dist-packages/scitbx/math/tests/tst_math.py" [FAIL] 4.0s 914s Time: 4.03 914s Return code: 139 914s OKs: 0 914s libtbx.python "/usr/lib/python3/dist-packages/scitbx/math/tests/tst_resample.py" [FAIL] 2.1s 914s Time: 2.14 914s Return code: 139 914s OKs: 0 914s libtbx.python "/usr/lib/python3/dist-packages/scitbx/math/tests/tst_gaussian.py" [FAIL] 3.8s 914s Time: 3.82 914s Return code: 139 914s OKs: 0 914s libtbx.python "/usr/lib/python3/dist-packages/scitbx/math/tests/tst_quadrature.py" [FAIL] 4.3s 914s Time: 4.32 914s Return code: 139 914s OKs: 0 914s libtbx.python "/usr/lib/python3/dist-packages/scitbx/math/tests/tst_halton.py" [FAIL] 4.1s 914s Time: 4.07 914s Return code: 139 914s OKs: 0 914s libtbx.python "/usr/lib/python3/dist-packages/scitbx/math/scale_curves.py" [FAIL] 2.3s 914s Time: 2.27 914s Return code: 139 914s OKs: 0 914s libtbx.python "/usr/lib/python3/dist-packages/scitbx/math/tests/tst_fit_peak.py" [FAIL] 2.3s 914s Time: 2.29 914s Return code: 139 914s OKs: 0 914s libtbx.python "/usr/lib/python3/dist-packages/scitbx/math/tests/tst_clustering.py" [FAIL] 2.1s 914s Time: 2.13 914s Return code: 139 914s OKs: 0 914s libtbx.python "/usr/lib/python3/dist-packages/scitbx/math/tst_zernike.py" [FAIL] 10.8s 914s Time: 10.84 914s Return Standard error: 914s Segmentation fault (core dumped) 914s Standard error: 914s Segmentation fault (core dumped) 914s Standard error: 914s Segmentation fault (core dumped) 914s Standard error: 914s Segmentation fault (core dumped) 914s Standard error: 914s Segmentation fault (core dumped) 914s Standard error: 914s Segmentation fault (core dumped) 914s Standard error: 914s Segmentation fault (core dumped) 914s Standard error: 914s Segmentation fault (core dumped) 914s Standard error: 914s Segmentation fault (core dumped) 914s Standard error: 914s Segmentation fault (core dumped) 914s Standard error: 914s Segmentation fault (core dumped) 914s Standard error: 914s Segmentation fault (core dumped) 914s Standard error: 914s Segmentation fault (core dumped) 914s Standard error: 914s Segmentation fault (core dumped) 914s Standard error: 914s Segmentation fault (core dumped) 914s Standard error: 914s Segmentation fault (core dumped) 914s Standard error: 914s Segmentation fault (core dumped) 914s Standard error: 914s Segmentation fault (core dumped) 914s Standard error: 914s Segmentation fault (core dumped) 914s Standard error: 914s Segmentation fault (core dumped) 914s Standard error: 914s Segmentation fault (core dumped) 914s Standard error: 914s Segmentation fault (core dumped) 914s Standard error: 914s Segmentation fault (core dumped) 914s Standard error: 914s Segmentation fault (core dumped) 914s Standard error: 914s Segmentation fault (core dumped) 914s Standard error: 914s Segmentation fault (core dumped) 914s Standard error: 914s Segmentation fault (core dumped) 914s Standard error: 914s Segmentation fault (core dumped) 914s Standard error: 914s Segmentation fault (core dumped) 914s Standard error: 914s Segmentation fault (core dumped) 914s Standard error: 914s Segmentation fault (core dumped) 914s Standard error: 914s Segmentation fault (core dumped) 914s Standard error: 914s Segmentation fault (core dumped) 914s Standard error: 914s Segmentation fault (core dumped) 914s Standard error: 914s Segmentation fault (core dumped) 914s Standard error: 914s Segmentation fault (core dumped) 914s Standard error: 914s Segmentation fault (core dumped) 914s Standard error: 914s Segmentation fault (core dumped) 914s Standard error: 914s Segmentation fault (core dumped) 914s Standard error: 914s Segmentation fault (core dumped) 914s Standard error: 914s Segmentation fault (core dumped) 914s Standard error: 914s Segmentation fault (core dumped) 914s Standard error: 914s Segmentation fault (core dumped) 914s Standard error: 914s Segmentation fault (core dumped) 914s Standard error: 914s Segmentation fault (core dumped) 914s Standard error: 914s Segmentation fault (core dumped) 914s Standard error: 914s Segmentation fault (core dumped) 914s Standard error: 914s Segmentation fault (core dumped) 914s Standard error: 914s Segmentation fault (core dumped) 914s Standard error: 914s Segmentation fault (core dumped) 914s Standard error: 914s Segmentation fault (core dumped) 914s Standard error: 914s Segmentation fault (core dumped) 914s Standard error: 914s Segmentation fault (core dumped) 914s Standard error: 914s Segmentation fault (core dumped) 914s Standard error: 914s Segmentation fault (core dumped) 914s Standard error: 914s Segmentation fault (core dumped) 914s Standard error: 914s Segmentation fault (core dumped) 914s Standard error: 914s Segmentation fault (core dumped) 914s Standard error: 914s Segmentation fault (core dumped) 914s Standard error: 914s Segmentation fault (core dumped) 914s Standard error: 914s Segmentation fault (core dumped) 914s Standard error: 914s Segmentation fault (core dumped) 914s Standard error: 914s Segmentation fault (core dumped) 914s Standard error: 914s Segmentation fault (core dumped) 914s Standard error: 914s Segmentation fault (core dumped) 914s Standard error: 914s Segmentation fault (core dumped) 914s Standard error: 914s Segmentation fault (core dumped) 914s Standard error: 914s Segmentation fault (core dumped) 914s Standard error: 914s Segmentation fault (core dumped) 914s Standard error: 914s Segmentation fault (core dumped) 914s Standard error: 914s Segmentation fault (core dumped) 914s Standard error: 914s Segmentation fault (core dumped) 914s Standard error: 914s Segmentation fault (core dumped) 914s Standard error: 914s Segmentation fault (core dumped) 914s Standard error: 914s Segmentation fault (core dumped) 914s Standard error: 914s Segmentation fault (core dumped) 914s Standard error: 914s Segmentation fault (core dumped) 914s Standard error: 914s Segmentation fault (core dumped) 914s Standard error: 914s Segmentation fault (core dumped) 914s Standard error: 914s Segmentation fault (core dumped) 914s Standard error: 914s Segmentation fault (core dumped) 914s Standard error: 914s Segmentation fault (core dumped) 914s Standard error: 914s Segmentation fault (core dumped) 914s Standard error: 914s Segmentation fault (core dumped) 914s Standard error: 914s Segmentation fault (core dumped) 914s Standard error: 914s Segmentation fault (core dumped) 914s Standard error: 914s Segmentation fault (core dumped) 914s Standard error: 914s Segmentation fault (core dumped) 914s Standard error: 914s Segmentation fault (core dumped) 914s Standard error: 914s Segmentation fault (core dumped) 914s Standard error: 914s Segmentation fault (core dumped) 914s Standard error: 914s Segmentation fault (core dumped) 914s Standard error: 914s Segmentation fault (core dumped) 914s Standard error: 914s Segmentation fault (core dumped) 914s Standard error: 914s Segmentation fault (core dumped) 914s Standard error: 914s Segmentation fault (core dumped) 914s Standard error: 914s Segmentation fault (core dumped) 914s Standard error: 914s Segmentation fault (core dumped) 914s Standard error: 914s Segmentation fault (core dumped) 914s Standard error: 914s Segmentation fault (core dumped) 914s Standard error: 914s Segmentation fault (core dumped) 914s Standard error: 914s Segmentation fault (core dumped) 914s Standard error: 914s Segmentation fault (core dumped) 914s Standard error: 914s Segmentation fault (core dumped) 914s Standard error: 914s Segmentation fault (core dumped) 914s Standard error: 914s Segmentation fault (core dumped) 914s Standard error: 914s Segmentation fault (core dumped) 914s Standard error: 914s Segmentation fault (core dumped) 914s Standard error: 914s Segmentation fault (core dumped) 914s Standard error: 914s Segmentation fault (core dumped) 914s Standard error: 914s Segmentation fault (core dumped) 914s Standard error: 914s Segmentation fault (core dumped) 914s Standard error: 914s Segmentation fault (core dumped) 914s Traceback (most recent call last): 914s File "/usr/lib/python3/dist-packages/cctbx/regression/tst_diffuse.py", line 140, in 914s exercise() 914s ~~~~~~~~^^ 914s File "/usr/lib/python3/dist-packages/cctbx/regression/tst_diffuse.py", line 126, in exercise 914s assert not easy_run.call(cmd) 914s ^^^^^^^^^^^^^^^^^^^^^^ 914s AssertionError 914s Standard error: 914s Segmentation fault (core dumped) 914s Standard error: 914s Segmentation fault (core dumped) 914s Standard error: 914s Segmentation fault (core dumped) 914s Standard error: 914s Segmentation fault (core dumped) 914s Standard error: 914s Segmentation fault (core dumped) 914s Standard error: 914s Segmentation fault (core dumped) 914s Standard error: 914s Segmentation fault (core dumped) 914s Standard error: 914s Segmentation fault (core dumped) 914s Standard error: 914s Segmentation fault (core dumped) 914s Standard error: 914s Segmentation fault (core dumped) 914s Standard error: 914s Segmentation fault (core dumped) 914s Standard error: 914s Segmentation fault (core dumped) 914s Standard error: 914s Segmentation fault (core dumped) 914s Standard error: 914s Segmentation fault (core dumped) 914s Standard error: 914s Segmentation fault (core dumped) 914s Standard error: 914s Segmentation fault (core dumped) 914s Standard error: 914s Segmentation fault (core dumped) 914s Standard error: 914s Traceback (most recent call last): 914s File "/usr/lib/python3.13/urllib/request.py", line 1541, in ftp_open 914s fw = self.connect_ftp(user, passwd, host, port, dirs, req.timeout) 914s File "/usr/lib/python3.13/urllib/request.py", line 1561, in connect_ftp 914s return ftpwrapper(user, passwd, host, port, dirs, timeout, 914s persistent=False) 914s File "/usr/lib/python3.13/urllib/request.py", line 2409, in __init__ 914s self.init() 914s ~~~~~~~~~^^ 914s File "/usr/lib/python3.13/urllib/request.py", line 2418, in init 914s self.ftp.connect(self.host, self.port, self.timeout) 914s ~~~~~~~~~~~~~~~~^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 914s File "/usr/lib/python3.13/ftplib.py", line 158, in connect 914s self.sock = socket.create_connection((self.host, self.port), self.timeout, 914s ~~~~~~~~~~~~~~~~~~~~~~~~^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 914s source_address=self.source_address) 914s ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 914s File "/usr/lib/python3.13/socket.py", line 864, in create_connection 914s raise exceptions[0] 914s File "/usr/lib/python3.13/socket.py", line 849, in create_connection 914s sock.connect(sa) 914s ~~~~~~~~~~~~^^^^ 914s ConnectionRefusedError: [Errno 111] Connection refused 914s 914s The above exception was the direct cause of the following exception: 914s 914s Traceback (most recent call last): 914s File "/usr/lib/python3/dist-packages/iotbx/cif/tests/tst_validation.py", line 327, in 914s exercise(sys.argv[1:]) 914s ~~~~~~~~^^^^^^^^^^^^^^ 914s File "/usr/lib/python3/dist-packages/iotbx/cif/tests/tst_validation.py", line 26, in exercise 914s exercise_validation() 914s ~~~~~~~~~~~~~~~~~~~^^ 914s File "/usr/lib/python3/dist-packages/iotbx/cif/tests/tst_validation.py", line 29, in exercise_validation 914s cd = validation.smart_load_dictionary(name="cif_core.dic") 914s File "/usr/lib/python3/dist-packages/iotbx/cif/validation.py", line 111, in smart_load_dictionary 914s url = locate_dictionary(name, registry_location=registry_location) 914s File "/usr/lib/python3/dist-packages/iotbx/cif/validation.py", line 129, in locate_dictionary 914s cm = cif.reader(file_object=urlopen(registry_location)).model() 914s ~~~~~~~^^^^^^^^^^^^^^^^^^^ 914s File "/usr/lib/python3.13/urllib/request.py", line 189, in urlopen 914s return opener.open(url, data, timeout) 914s ~~~~~~~~~~~^^^^^^^^^^^^^^^^^^^^ 914s File "/usr/lib/python3.13/urllib/request.py", line 489, in open 914s response = self._open(req, data) 914s File "/usr/lib/python3.13/urllib/request.py", line 506, in _open 914s result = self._call_chain(self.handle_open, protocol, protocol + 914s '_open', req) 914s File "/usr/lib/python3.13/urllib/request.py", line 466, in _call_chain 914s result = func(*args) 914s File "/usr/lib/python3.13/urllib/request.py", line 1558, in ftp_open 914s raise URLError(exp) from exp 914s urllib.error.URLError: 914s Standard error: 914s Segmentation fault (core dumped) 914s Standard error: 914s Segmentation fault (core dumped) 914s Standard error: 914s Segmentation fault (core dumped) 914s Standard error: 914s Segmentation fault (core dumped) 914s Standard error: 914s Segmentation fault (core dumped) 914s Standard error: 914s *** buffer overflow detected ***: terminated 914s Aborted (core dumped) 914s Standard error: 914s *** buffer overflow detected ***: terminated 914s Aborted (core dumped) 914s Standard error: 914s Segmentation fault (core dumped) 914s Standard error: 914s Segmentation fault (core dumped) 914s Standard error: 914s Segmentation fault (core dumped) 914s Standard error: 914s Segmentation fault (core dumped) 914s Standard error: 914s Segmentation fault (core dumped) 914s Standard error: 914s Segmentation fault (core dumped) 914s Standard error: 914s *** buffer overflow detected ***: terminated 914s Aborted (core dumped) 914s Standard error: 914s Segmentation fault (core dumped) 914s Standard error: 914s Segmentation fault (core dumped) 914s Standard error: 914s Segmentation fault (core dumped) 914s Standard error: 914s Segmentation fault (core dumped) 914s Standard error: 914s Segmentation fault (core dumped) 914s Standard error: 914s Segmentation fault (core dumped) 914s Standard error: 914s Segmentation fault (core dumped) 914s Standard error: 914s /usr/lib/python3/dist-packages/ccp4io_adaptbx/__init__.py:25: UserWarning: ccp4io_adaptbx: cannot locate syminfo.lib 914s warnings.warn("ccp4io_adaptbx: cannot locate syminfo.lib") 914s Segmentation fault (core dumped) 914s Standard error: 914s Segmentation fault (core dumped) 914s Standard error: 914s Segmentation fault (core dumped) 914s Standard error: 914s Segmentation fault (core dumped) 914s Standard error: 914s Segmentation fault (core dumped) 914s Standard error: 914s Segmentation fault (core dumped) 914s Standard error: 914s Traceback (most recent call last): 914s File "/usr/lib/python3/dist-packages/iotbx/regression/tst_lattice_symmetry.py", line 477, in 914s exercise(sys.argv[1:]) 914s ~~~~~~~~^^^^^^^^^^^^^^ 914s File "/usr/lib/python3/dist-packages/iotbx/regression/tst_lattice_symmetry.py", line 22, in exercise 914s run_and_compare( 914s ~~~~~~~~~~~~~~~^ 914s ['iotbx.lattice_symmetry' 914s ^^^^^^^^^^^^^^^^^^^^^^^^^ 914s ...<31 lines>... 914s 914s 914s """) 914s ^^^^ 914s File "/usr/lib/python3/dist-packages/iotbx/regression/tst_lattice_symmetry.py", line 17, in run_and_compare 914s command=command).raise_if_errors().stdout_lines 914s ~~~~~~~~~~~~~~~^^ 914s File "/usr/lib/python3/dist-packages/libtbx/easy_run.py", line 46, in raise_if_errors 914s raise Error(msg) 914s RuntimeError: child process stderr output: 914s command: 'iotbx.lattice_symmetry --unit_cell="12.7923,12.8923,29.4356,102.846,103.846,22.7475"' 914s Segmentation fault (core dumped) 914s Standard error: 914s Segmentation fault (core dumped) 914s Standard error: 914s Segmentation fault (core dumped) 914s Standard error: 914s *** buffer overflow detected ***: terminated 914s Aborted (core dumped) 914s Traceback (most recent call last): 914s File "/usr/lib/python3/dist-packages/iotbx/regression/tst_box_around_molecule.py", line 138, in 914s exercise() 914s ~~~~~~~~^^ 914s File "/usr/lib/python3/dist-packages/iotbx/regression/tst_box_around_molecule.py", line 48, in exercise 914s assert not easy_run.call("iotbx.pdb.box_around_molecule %s.pdb" % ( 914s ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 914s prefix)) 914s ^^^^^^^^ 914s AssertionError 914s Standard error: 914s *** buffer overflow detected ***: terminated 914s Aborted (core dumped) 914s Standard error: 914s *** buffer overflow detected ***: terminated 914s Aborted (core dumped) 914s Standard error: 914s Segmentation fault (core dumped) 914s Standard error: 914s Segmentation fault (core dumped) 914s Standard error: 914s Traceback (most recent call last): 914s File "/usr/lib/python3/dist-packages/iotbx/regression/tst_split_models.py", line 60, in 914s exercise() 914s ~~~~~~~~^^ 914s File "/usr/lib/python3/dist-packages/iotbx/regression/tst_split_models.py", line 48, in exercise 914s assert (len(out.stdout_lines) == 2) and (len(out.stderr_lines) == 0) 914s ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 914s AssertionError 914s Standard error: 914s Segmentation fault (core dumped) 914s Standard error: 914s Segmentation fault (core dumped) 914s Traceback (most recent call last): 914s File "/usr/lib/python3/dist-packages/iotbx/regression/tst_sort_atoms.py", line 815, in 914s exercise_1() 914s ~~~~~~~~~~^^ 914s File "/usr/lib/python3/dist-packages/iotbx/regression/tst_sort_atoms.py", line 806, in exercise_1 914s assert not easy_run.call(cmd) 914s ^^^^^^^^^^^^^^^^^^^^^^ 914s AssertionError 914s Standard error: 914s Segmentation fault (core dumped) 914s Standard error: 914s Segmentation fault (core dumped) 914s Standard error: 914s Segmentation fault (core dumped) 914s Standard error: 914s Segmentation fault (core dumped) 914s Standard error: 914s Segmentation fault (core dumped) 914s Standard error: 914s Segmentation fault (core dumped) 914s Standard error: 914s Segmentation fault (core dumped) 914s Standard error: 914s Segmentation fault (core dumped) 914s Standard error: 914s Segmentation fault (core dumped) 914s Standard error: 914s Segmentation fault (core dumped) 914s Standard error: 914s Segmentation fault (core dumped) 914s Standard error: 914s Segmentation fault (core dumped) 914s Standard error: 914s Segmentation fault (core dumped) 914s Standard error: 914s Segmentation fault (core dumped) 914s Standard error: 914s Segmentation fault (core dumped) 914s Standard error: 914s *** buffer overflow detected ***: terminated 914s Aborted (core dumped) 914s Standard error: 914s Segmentation fault (core dumped) 914s Standard error: 914s Segmentation fault (core dumped) 914s Standard error: 914s Traceback (most recent call last): 914s File "/usr/lib/python3/dist-packages/iotbx/regression/tst_split_data_cif.py", line 395, in 914s tst_1() 914s ~~~~~^^ 914s File "/usr/lib/python3/dist-packages/iotbx/regression/tst_split_data_cif.py", line 370, in tst_1 914s assert os.path.isfile('%s.cif_%s_000.mtz' % (prefix, bn)) 914s ~~~~~~~~~~~~~~^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 914s AssertionError 914s Standard error: 914s *** buffer overflow detected ***: terminated 914s Aborted (core dumped) 914s Standard error: 914s Segmentation fault (core dumped) 914s Standard error: 914s Segmentation fault (core dumped) 914s Standard error: 914s *** buffer overflow detected ***: terminated 914s Aborted (core dumped) 914s Standard error: 914s Segmentation fault (core dumped) 914s Standard error: 914s Segmentation fault (core dumped) 914s Standard error: 914s Segmentation fault (core dumped) 914s Standard error: 914s Segmentation fault (core dumped) 914s Standard error: 914s Segmentation fault (core dumped) 914s Standard error: 914s Segmentation fault (core dumped) 914s Standard error: 914s Segmentation fault (core dumped) 914s Standard error: 914s Segmentation fault (core dumped) 914s Standard error: 914s Segmentation fault (core dumped) 914s Standard error: 914s Segmentation fault (core dumped) 914s Standard error: 914s Segmentation fault (core dumped) 914s Standard error: 914s Segmentation fault (core dumped) 914s Standard error: 914s Segmentation fault (core dumped) 914s Standard error: 914s Segmentation fault (core dumped) 914s Standard error: 914s Segmentation fault (core dumped) 914s Standard error: 914s Segmentation fault (core dumped) 914s Standard error: 914s Segmentation fault (core dumped) 914s Standard error: 914s Segmentation fault (core dumped) 914s Standard error: 914s Segmentation fault (core dumped) 914s Standard error: 914s Segmentation fault (core dumped) 914s Standard error: 914s Segmentation fault (core dumped) 914s Standard error: 914s Segmentation fault (core dumped) 914s Standard error: 914s Segmentation fault (core dumped) 914s Standard error: 914s Segmentation fault (core dumped) 914s Standard error: 914s Segmentation fault (core dumped) 914s Standard error: 914s Segmentation fault (core dumped) 914s Standard error: 914s Segmentation fault (core dumped) 914s Standard error: 914s Segmentation fault (core dumped) 914s Standard error: 914s Segmentation fault (core dumped) 914s Standard error: 914s Segmentation fault (core dumped) 914s Standard error: 914s Segmentation fault (core dumped) 914s Standard error: 914s Segmentation fault (core dumped) 914s Standard error: 914s Segmentation fault (core dumped) 914s Standard error: 914s Segmentation fault (core dumped) 914s Standard error: 914s Segmentation fault (core dumped) 914s Standard error: 914s Segmentation fault (core dumped) 914s Standard error: 914s Segmentation fault (core dumped) 914s Standard error: 914s Segmentation fault (core dumped) 914s Standard error: 914s Segmentation fault (core dumped) 914s Standard error: 914s Segmentation fault (core dumped) 914s Standard error: 914s Segmentation fault (core dumped) 914s Standard error: 914s Segmentation fault (core dumped) 914s Standard error: 914s Segmentation fault (core dumped) 914s Standard error: 914s Segmentation fault (core dumped) 914s Standard error: 914s Segmentation fault (core dumped) 914s Standard error: 914s Segmentation fault (core dumped) 914s Standard error: 914s Segmentation fault (core dumped) 914s Standard error: 914s Segmentation fault (core dumped) 914s Standard error: 914s Segmentation fault (core dumped) 914s Standard error: 914s Segmentation fault (core dumped) 914s Standard error: 914s Segmentation fault (core dumped) 914s Standard error: 914s Segmentation fault (core dumped) 914s Standard error: 914s Segmentation fault (core dumped) 914s Standard error: 914s Segmentation fault (core dumped) 914s Standard error: 914s Segmentation fault (core dumped) 914s Standard error: 914s Segmentation fault (core dumped) 914s Standard error: 914s Segmentation fault (core dumped) 914s Standard error: 914s Segmentation fault (core dumped) 914s Standard error: 914s Segmentation fault (core dumped) 914s Standard error: 914s Segmentation fault (core dumped) 914s Standard error: 914s Segmentation fault (core dumped) 914s Standard error: 914s Segmentation fault (core dumped) 914s Standard error: 914s Segmentation fault (core dumped) 914s Standard error: 914s Segmentation fault (core dumped) 914s Standard error: 914s Segmentation fault (core dumped) 914s Standard error: 914s Segmentation fault (core dumped) 914s Standard error: 914s Segmentation fault (core dumped) 914s Standard error: 914s Segmentation fault (core dumped) 914s Standard error: 914s Segmentation fault (core dumped) 914s Standard error: 914s Segmentation fault (core dumped) 914s Standard error: 914s Segmentation fault (core dumped) 914s Standard error: 914s Segmentation fault (core dumped) 914s Standard error: 914s Segmentation fault (core dumped) 914s Standard error: 914s Segmentation fault (core dumped) 914s Standard error: 914s Segmentation fault (core dumped) 914s Standard error: 914s Segmentation fault (core dumped) 914s Standard error: 914s Segmentation fault (core dumped) 914s Standard error: 914s Segmentation fault (core dumped) 914s Standard error: 914s Segmentation fault (core dumped) 914s Standard error: 914s Segmentation fault (core dumped) 914s Standard error: 914s Segmentation fault (core dumped) 914s Standard error: 914s Segmentation fault (core dumped) 914s Standard error: 914s Segmentation fault (core dumped) 914s Standard error: 914s Segmentation fault (core dumped) 914s Standard error: 914s Segmentation fault (core dumped) 914s Standard error: 914s Segmentation fault (core dumped) 914s Standard error: 914s Traceback (most recent call last): 914s File "/usr/lib/python3/dist-packages/smtbx/regression/tst_commandline_anomrefine.py", line 37, in 914s run() 914s ~~~^^ 914s File "/usr/lib/python3/dist-packages/smtbx/regression/tst_commandline_anomrefine.py", line 27, in run 914s run_buf.raise_if_errors() 914s ~~~~~~~~~~~~~~~~~~~~~~~^^ 914s File "/usr/lib/python3/dist-packages/libtbx/easy_run.py", line 46, in raise_if_errors 914s raise Error(msg) 914s RuntimeError: child process stderr output: 914s command: 'smtbx.anom_refine /usr/lib/python3/dist-packages/smtbx/regression/test_data/thpp.cif /usr/lib/python3/dist-packages/smtbx/regression/test_data/thpp.hkl F -e13000 -t -O -d0 -s0 -c25' 914s Segmentation fault (core dumped) 914s Standard error: 914s Segmentation fault (core dumped) 914s Standard error: 914s Segmentation fault (core dumped) 914s Standard error: 914s Segmentation fault (core dumped) 914s Standard error: 914s Segmentation fault (core dumped) 914s Standard error: 914s Segmentation fault (core dumped) 914s code: 139 914s OKs: 0 914s libtbx.python "/usr/lib/python3/dist-packages/scitbx/math/tests/tst_periodogram.py" [FAIL] 4.6s 914s Time: 4.58 914s Return code: 139 914s OKs: 0 914s libtbx.python "/usr/lib/python3/dist-packages/scitbx/math/tests/tst_error_propagation_matrix_inverse.py" [FAIL] 4.2s 914s Time: 4.23 914s Return code: 139 914s OKs: 0 914s libtbx.python "/usr/lib/python3/dist-packages/scitbx/lbfgs/tst_curvatures.py" [FAIL] 3.5s 914s Time: 3.55 914s Return code: 139 914s OKs: 0 914s libtbx.python "/usr/lib/python3/dist-packages/scitbx/lbfgsb/boost_python/tst_lbfgsb.py" [FAIL] 2.3s 914s Time: 2.30 914s Return code: 139 914s OKs: 0 914s libtbx.python "/usr/lib/python3/dist-packages/scitbx/fftpack/boost_python/tst_fftpack.py" [FAIL] 2.3s 914s Time: 2.32 914s Return code: 139 914s OKs: 0 914s libtbx.python "/usr/lib/python3/dist-packages/scitbx/examples/flex_grid.py" [FAIL] 2.1s 914s Time: 2.09 914s Return code: 139 914s OKs: 0 914s libtbx.python "/usr/lib/python3/dist-packages/scitbx/examples/lbfgs_linear_least_squares_fit.py" [FAIL] 3.2s 914s Time: 3.23 914s Return code: 139 914s OKs: 0 914s libtbx.python "/usr/lib/python3/dist-packages/scitbx/examples/chebyshev_lsq_example.py" [FAIL] 3.9s 914s Time: 3.88 914s Return code: 139 914s OKs: 0 914s libtbx.python "/usr/lib/python3/dist-packages/scitbx/examples/immoptibox_ports.py" [FAIL] 4.2s 914s Time: 4.21 914s Return code: 139 914s OKs: 0 914s libtbx.python "/usr/lib/python3/dist-packages/scitbx/examples/integrating_a_weighted_sinc_function.py" [FAIL] 4.1s 914s Time: 4.10 914s Return code: 139 914s OKs: 0 914s libtbx.python "/usr/lib/python3/dist-packages/scitbx/examples/minimizer_comparisons.py" [FAIL] 4.1s 914s Time: 4.07 914s Return code: 139 914s OKs: 0 914s libtbx.python "/usr/lib/python3/dist-packages/scitbx/graph/tst_tardy_tree.py" [FAIL] 2.5s 914s Time: 2.55 914s Return code: 139 914s OKs: 0 914s libtbx.python "/usr/lib/python3/dist-packages/scitbx/rigid_body/essence/tst_basic.py" [FAIL] 4.4s 914s Time: 4.37 914s Return code: 139 914s OKs: 0 914s libtbx.python "/usr/lib/python3/dist-packages/scitbx/rigid_body/essence/tst_tardy.py" [FAIL] 4.4s 914s Time: 4.36 914s Return code: 139 914s OKs: 0 914s libtbx.python "/usr/lib/python3/dist-packages/scitbx/rigid_body/essence/tst_energy_plots.py" [FAIL] 4.3s 914s Time: 4.33 914s Return code: 139 914s OKs: 0 914s libtbx.python "/usr/lib/python3/dist-packages/scitbx/rigid_body/tst.py" [FAIL] 4.3s 914s Time: 4.26 914s Return code: 139 914s OKs: 0 914s libtbx.python "/usr/lib/python3/dist-packages/scitbx/rigid_body/proto/tst_featherstone.py" [FAIL] 4.3s 914s Time: 4.31 914s Return code: 139 914s OKs: 0 914s libtbx.python "/usr/lib/python3/dist-packages/scitbx/rigid_body/proto/tst_free_motion.py" [FAIL] 4.3s 914s Time: 4.32 914s Return code: 139 914s OKs: 0 914s libtbx.python "/usr/lib/python3/dist-packages/scitbx/rigid_body/proto/tst_free_motion_hard.py" [FAIL] 4.3s 914s Time: 4.29 914s Return code: 139 914s OKs: 0 914s libtbx.python "/usr/lib/python3/dist-packages/scitbx/rigid_body/proto/tst_joint_lib.py" [FAIL] 4.4s 914s Time: 4.39 914s Return code: 139 914s OKs: 0 914s libtbx.python "/usr/lib/python3/dist-packages/scitbx/rigid_body/proto/tst_singular.py" [FAIL] 4.4s 914s Time: 4.39 914s Return code: 139 914s OKs: 0 914s libtbx.python "/usr/lib/python3/dist-packages/scitbx/rigid_body/proto/tst_molecules.py" [FAIL] 4.1s 914s Time: 4.07 914s Return code: 139 914s OKs: 0 914s libtbx.python "/usr/lib/python3/dist-packages/scitbx/sparse/tests/tst_sparse.py" [FAIL] 4.3s 914s Time: 4.31 914s Return code: 139 914s OKs: 0 914s libtbx.python "/usr/lib/python3/dist-packages/scitbx/sparse/tests/tst_lu_factorization.py" [FAIL] 4.3s 914s Time: 4.30 914s Return code: 139 914s OKs: 0 914s libtbx.python "/usr/lib/python3/dist-packages/scitbx/iso_surface/tst_iso_surface.py" [FAIL] 4.3s 914s Time: 4.28 914s Return code: 139 914s OKs: 0 914s libtbx.python "/usr/lib/python3/dist-packages/scitbx/tests/simplex.py" [FAIL] 4.2s 914s Time: 4.20 914s Return code: 139 914s OKs: 0 914s libtbx.python "/usr/lib/python3/dist-packages/scitbx/tests/differential_evolution.py" [FAIL] 4.0s 914s Time: 3.99 914s Return code: 139 914s OKs: 0 914s libtbx.python "/usr/lib/python3/dist-packages/scitbx/tests/direct_search_simulated_annealing.py" [FAIL] 3.9s 914s Time: 3.87 914s Return code: 139 914s OKs: 0 914s libtbx.python "/usr/lib/python3/dist-packages/scitbx/random/tests/tst_random.py" [FAIL] 4.5s 914s Time: 4.48 914s Return code: 139 914s OKs: 0 914s libtbx.python "/usr/lib/python3/dist-packages/scitbx/lstbx/tests/tst_normal_equations.py" [FAIL] 4.6s 914s Time: 4.63 914s Return code: 139 914s OKs: 0 914s libtbx.python "/usr/lib/python3/dist-packages/scitbx/dtmin/regression/tst_dtmin_basic.py" [FAIL] 2.4s 914s Time: 2.36 914s Return code: 139 914s OKs: 0 914s libtbx.python "/usr/lib/python3/dist-packages/scitbx/dtmin/regression/tst_dtmin_booth.py" [FAIL] 3.9s 914s Time: 3.89 914s Return code: 139 914s OKs: 0 914s libtbx.python "/usr/lib/python3/dist-packages/scitbx/dtmin/regression/tst_dtmin_twisted.py" [FAIL] 4.0s 914s Time: 3.99 914s Return code: 139 914s OKs: 0 914s libtbx.python "/usr/lib/python3/dist-packages/smtbx/absolute_structure/tests/tst_absolute_structure.py" --fix_random_seeds [FAIL] 4.5s 914s Time: 4.51 914s Return code: 139 914s OKs: 0 914s libtbx.python "/usr/lib/python3/dist-packages/smtbx/ab_initio/tests/tst_ab_initio_ext.py" [FAIL] 4.9s 914s Time: 4.93 914s Return code: 139 914s OKs: 0 914s libtbx.python "/usr/lib/python3/dist-packages/smtbx/ab_initio/tests/tst_charge_flipping.py" --fix_seed --on=E "hall: P 1" "hall: P 3" "hall: -P 2ybc" [FAIL] 4.8s 914s Time: 4.79 914s Return code: 139 914s OKs: 0 914s libtbx.python "/usr/lib/python3/dist-packages/smtbx/masks/tests/tst_masks.py" [FAIL] 5.0s 914s Time: 5.02 914s Return code: 139 914s OKs: 0 914s libtbx.python "/usr/lib/python3/dist-packages/smtbx/structure_factors/direct/tests/tst_standard_xray.py" [FAIL] 5.2s 914s Time: 5.19 914s Return code: 139 914s OKs: 0 914s libtbx.python "/usr/lib/python3/dist-packages/smtbx/refinement/tests/tst_weighting_schemes.py" --fix_random_seeds [FAIL] 5.1s 914s Time: 5.08 914s Return code: 139 914s OKs: 0 914s libtbx.python "/usr/lib/python3/dist-packages/smtbx/refinement/constraints/tests/tst_lbfgs.py" [FAIL] 5.1s 914s Time: 5.07 914s Return code: 139 914s OKs: 0 914s libtbx.python "/usr/lib/python3/dist-packages/smtbx/refinement/constraints/tests/tst_occupancies.py" [FAIL] 5.4s 914s Time: 5.37 914s Return code: 139 914s OKs: 0 914s libtbx.python "/usr/lib/python3/dist-packages/smtbx/refinement/constraints/tests/tst_same_group.py" [FAIL] 5.3s 914s Time: 5.32 914s Return code: 139 914s OKs: 0 914s libtbx.python "/usr/lib/python3/dist-packages/smtbx/refinement/constraints/tests/tst_reparametrisation.py" [FAIL] 5.1s 914s Time: 5.09 914s Return code: 139 914s OKs: 0 914s libtbx.python "/usr/lib/python3/dist-packages/smtbx/refinement/constraints/tests/tst_constrained_structure.py" --normal_eqns_solving_method=naive [FAIL] 5.2s 914s Time: 5.20 914s Return code: 139 914s OKs: 0 914s libtbx.python "/usr/lib/python3/dist-packages/smtbx/refinement/constraints/tests/tst_disorder.py" [FAIL] 5.2s 914s Time: 5.24 914s Return code: 139 914s OKs: 0 914s libtbx.python "/usr/lib/python3/dist-packages/smtbx/refinement/constraints/tests/tst_constrained_structure.py" --normal_eqns_solving_method=levenberg-marquardt [FAIL] 2.6s 914s Time: 2.65 914s Return code: 139 914s OKs: 0 914s libtbx.python "/usr/lib/python3/dist-packages/smtbx/refinement/constraints/tests/tst_direction.py" [FAIL] 2.8s 914s Time: 2.76 914s Return code: 139 914s OKs: 0 914s libtbx.python "/usr/lib/python3/dist-packages/smtbx/refinement/constraints/tests/tst_rigid.py" [FAIL] 5.3s 914s Time: 5.30 914s Return code: 139 914s OKs: 0 914s libtbx.python "/usr/lib/python3/dist-packages/smtbx/refinement/restraints/tests/tst_adp_restraints.py" [FAIL] 5.0s 914s Time: 5.03 914s Return code: 139 914s OKs: 0 914s libtbx.python "/usr/lib/python3/dist-packages/smtbx/refinement/restraints/tests/tst_manager.py" [FAIL] 5.0s 914s Time: 5.01 914s Return code: 139 914s OKs: 0 914s libtbx.python "/usr/lib/python3/dist-packages/smtbx/refinement/restraints/tests/tst_restraints.py" --verbose --scatterers=5 --resolution=0.2 [FAIL] 5.1s 914s Time: 5.06 914s Return code: 139 914s OKs: 0 914s libtbx.python "/usr/lib/python3/dist-packages/smtbx/regression/tst_commandline_refine.py" [FAIL] 5.4s 914s Time: 5.37 914s Return code: 139 914s OKs: 0 914s libtbx.python "/usr/lib/python3/dist-packages/smtbx/regression/tst_commandline_anomrefine.py" [FAIL] 6.8s 914s Time: 6.79 914s Return code: 1 914s OKs: 0 914s libtbx.python "/usr/lib/python3/dist-packages/smtbx/tests/tst_utils.py" [FAIL] 5.3s 914s Time: 5.27 914s Return code: 139 914s OKs: 0 914s libtbx.python "/usr/lib/python3/dist-packages/rstbx/dps_core/tst_iotbx_converter.py" [FAIL] 4.8s 914s Time: 4.83 914s Return code: 139 914s OKs: 0 914s libtbx.python "/usr/lib/python3/dist-packages/rstbx/diffraction/fastbragg/tst_bragg_minimal.py" [FAIL] 4.3s 914s Time: 4.31 914s Return code: 139 914s OKs: 0 914s libtbx.python "/usr/lib/python3/dist-packages/rstbx/sublattice_support/tst_sublattice.py" [FAIL] 4.8s 914s Time: 4.78 914s Return code: 139 914s OKs: 0 914s libtbx.python -c "from rstbx.run_tests import run; run()" [FAIL] 3.7s 914s Time: 3.71 914s Return code: 139 914s OKs: 0 914s 914s Please verify these tests manually. 914s 914s Summary: 914s Tests run : 546 914s Failures : 284 914s Warnings (possible failures) : 0 914s Known Failures ( 4) : 4 914s Known Unstable ( 3) : 2 914s Stderr output (discouraged) : 291 914s 914s See run_tests_parallel_zlog for full output. 914s 914s 914s ******************************************************************************** 914s ERROR: 284 TEST FAILURES. PLEASE FIX BEFORE COMMITTING CODE. 914s ******************************************************************************** 914s 915s autopkgtest [12:41:01]: test cctbx: -----------------------] 915s cctbx FAIL non-zero exit status 1 915s autopkgtest [12:41:01]: test cctbx: - - - - - - - - - - results - - - - - - - - - - 916s autopkgtest [12:41:02]: test dxtbx: preparing testbed 991s autopkgtest [12:42:17]: testbed dpkg architecture: s390x 991s autopkgtest [12:42:17]: testbed apt version: 2.9.32ubuntu1 992s autopkgtest [12:42:18]: @@@@@@@@@@@@@@@@@@@@ test bed setup 992s autopkgtest [12:42:18]: testbed release detected to be: plucky 992s autopkgtest [12:42:18]: updating testbed package index (apt update) 993s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease [110 kB] 993s Hit:2 http://ftpmaster.internal/ubuntu plucky InRelease 993s Hit:3 http://ftpmaster.internal/ubuntu plucky-updates InRelease 993s Hit:4 http://ftpmaster.internal/ubuntu plucky-security InRelease 993s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/restricted Sources [2420 B] 993s Get:6 http://ftpmaster.internal/ubuntu plucky-proposed/main Sources [46.1 kB] 993s Get:7 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse Sources [11.5 kB] 993s Get:8 http://ftpmaster.internal/ubuntu plucky-proposed/universe Sources [384 kB] 993s Get:9 http://ftpmaster.internal/ubuntu plucky-proposed/main s390x Packages [66.4 kB] 993s Get:10 http://ftpmaster.internal/ubuntu plucky-proposed/universe s390x Packages [290 kB] 993s Get:11 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse s390x Packages [2512 B] 994s Fetched 913 kB in 1s (1115 kB/s) 994s Reading package lists... 995s Reading package lists... 995s Building dependency tree... 995s Reading state information... 995s Calculating upgrade... 995s Calculating upgrade... 995s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 995s Reading package lists... 995s Building dependency tree... 995s Reading state information... 995s Solving dependencies... 995s The following packages will be REMOVED: 995s linux-image-6.11.0-8-generic* 996s 0 upgraded, 0 newly installed, 1 to remove and 0 not upgraded. 996s After this operation, 10.5 MB disk space will be freed. 996s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 81495 files and directories currently installed.) 996s Removing linux-image-6.11.0-8-generic (6.11.0-8.8) ... 996s I: /boot/vmlinuz.old is now a symlink to vmlinuz-6.14.0-7-generic 996s I: /boot/initrd.img.old is now a symlink to initrd.img-6.14.0-7-generic 996s /etc/kernel/postrm.d/initramfs-tools: 996s update-initramfs: Deleting /boot/initrd.img-6.11.0-8-generic 996s /etc/kernel/postrm.d/zz-zipl: 996s Using config file '/etc/zipl.conf' 996s Building bootmap in '/boot' 996s Adding IPL section 'ubuntu' (default) 996s Preparing boot device for LD-IPL: vda (0000). 996s Done. 996s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 81491 files and directories currently installed.) 996s Purging configuration files for linux-image-6.11.0-8-generic (6.11.0-8.8) ... 996s rmdir: failed to remove '/lib/modules/6.11.0-8-generic': Directory not empty 996s autopkgtest [12:42:22]: upgrading testbed (apt dist-upgrade and autopurge) 996s Reading package lists... 996s Building dependency tree... 996s Reading state information... 997s Calculating upgrade...Starting pkgProblemResolver with broken count: 0 997s Starting 2 pkgProblemResolver with broken count: 0 997s Done 997s Entering ResolveByKeep 997s 997s Calculating upgrade... 997s The following packages were automatically installed and are no longer required: 997s libnsl2 libpython3.12-minimal libpython3.12-stdlib libpython3.12t64 997s linux-headers-6.11.0-8 linux-headers-6.11.0-8-generic 997s linux-modules-6.11.0-8-generic linux-tools-6.11.0-8 997s linux-tools-6.11.0-8-generic 997s Use 'sudo apt autoremove' to remove them. 997s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 997s Reading package lists... 997s Building dependency tree... 997s Reading state information... 997s Starting pkgProblemResolver with broken count: 0 997s Starting 2 pkgProblemResolver with broken count: 0 997s Done 998s Solving dependencies... 998s The following packages will be REMOVED: 998s libnsl2* libpython3.12-minimal* libpython3.12-stdlib* libpython3.12t64* 998s linux-headers-6.11.0-8* linux-headers-6.11.0-8-generic* 998s linux-modules-6.11.0-8-generic* linux-tools-6.11.0-8* 998s linux-tools-6.11.0-8-generic* 998s 0 upgraded, 0 newly installed, 9 to remove and 0 not upgraded. 998s After this operation, 167 MB disk space will be freed. 998s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 81491 files and directories currently installed.) 998s Removing linux-tools-6.11.0-8-generic (6.11.0-8.8) ... 998s Removing linux-tools-6.11.0-8 (6.11.0-8.8) ... 998s Removing libpython3.12t64:s390x (3.12.9-1) ... 998s Removing libpython3.12-stdlib:s390x (3.12.9-1) ... 998s Removing libnsl2:s390x (1.3.0-3build3) ... 998s Removing libpython3.12-minimal:s390x (3.12.9-1) ... 998s Removing linux-headers-6.11.0-8-generic (6.11.0-8.8) ... 998s Removing linux-headers-6.11.0-8 (6.11.0-8.8) ... 999s Removing linux-modules-6.11.0-8-generic (6.11.0-8.8) ... 999s Processing triggers for libc-bin (2.41-1ubuntu1) ... 999s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 56391 files and directories currently installed.) 999s Purging configuration files for libpython3.12-minimal:s390x (3.12.9-1) ... 999s Purging configuration files for linux-modules-6.11.0-8-generic (6.11.0-8.8) ... 999s autopkgtest [12:42:25]: rebooting testbed after setup commands that affected boot 1020s Reading package lists... 1021s Building dependency tree... 1021s Reading state information... 1021s Starting pkgProblemResolver with broken count: 0 1021s Starting 2 pkgProblemResolver with broken count: 0 1021s Done 1021s The following NEW packages will be installed: 1021s adwaita-icon-theme at-spi2-common bitshuffle blt dconf-gsettings-backend 1021s dconf-service fontconfig fontconfig-config fonts-dejavu-core 1021s fonts-dejavu-mono fonts-font-awesome fonts-lato fonts-lyx 1021s gtk-update-icon-cache hicolor-icon-theme libaec0 libann-cctbx-dev 1021s libann-cctbx0 libantlr3c-3.4-0 libasan8 libatk-bridge2.0-0t64 libatk1.0-0t64 1021s libatspi2.0-0t64 libavahi-client3 libavahi-common-data libavahi-common3 1021s libblas3 libboost-numpy1.83.0 libboost-python-dev libboost-python1.83-dev 1021s libboost-python1.83.0 libboost-thread1.83.0 libboost-timer1.83.0 1021s libboost1.83-dev libcairo-gobject2 libcairo2 libcbf1t64 libccp4-data 1021s libccp4-dev libccp4c0t64 libccp4f0t64 libcctbx-dev libcctbx0 libcolord2 1021s libcups2t64 libdatrie1 libdconf1 libdeflate0 libdouble-conversion3 1021s libegl-mesa0 libegl1 libepoxy0 libevent-pthreads-2.1-7t64 libexpat1-dev 1021s libfabric1 libfontconfig1 libfreetype6 libgbm1 libgcc-14-dev 1021s libgdk-pixbuf-2.0-0 libgdk-pixbuf2.0-common libgfortran5 libgl1 1021s libgl1-mesa-dri libglew2.2 libglu1-mesa libglvnd0 libglx-mesa0 libglx0 1021s libgomp1 libgraphite2-3 libgtk-3-0t64 libgtk-3-common libharfbuzz0b 1021s libhdf5-310 libhdf5-hl-310 libhdf5-openmpi-310 libhwloc-plugins libhwloc15 1021s libice6 libimagequant0 libinput-bin libinput10 libitm1 libjbig0 1021s libjpeg-turbo8 libjpeg8 libjs-jquery libjs-jquery-ui libjs-sphinxdoc 1021s libjs-underscore liblapack3 liblbfgsb0 liblcms2-2 liblzf1 libmd4c0 1021s libmmdb2-0 libmtdev1t64 libmunge2 libnetcdf22 libnotify4 libopengl0 1021s libopenjp2-7 libopenmpi40 libpango-1.0-0 libpangocairo-1.0-0 1021s libpangoft2-1.0-0 libpciaccess0 libpcre2-16-0 libpcre2-32-0 libpixman-1-0 1021s libpmix2t64 libpython3-dev libpython3.13-dev libqhull-r8.0 libqt5core5t64 1021s libqt5dbus5t64 libqt5designer5 libqt5gui5t64 libqt5help5 libqt5network5t64 1021s libqt5opengl5t64 libqt5printsupport5t64 libqt5sql5t64 libqt5test5t64 1021s libqt5widgets5t64 libqt5xml5t64 libraqm0 librdmacm1t64 libsharpyuv0 libsm6 1021s libssm2 libstdc++-14-dev libsz2 libtcl8.6 libthai-data libthai0 libtiff6 1021s libtk8.6 libubsan1 libvulkan1 libwacom-common libwacom9 libwayland-client0 1021s libwayland-cursor0 libwayland-egl1 libwayland-server0 libwebp7 libwebpdemux2 1021s libwebpmux3 libwxbase3.2-1t64 libwxgtk-gl3.2-1t64 libwxgtk3.2-1t64 1021s libx11-xcb1 libxcb-dri3-0 libxcb-glx0 libxcb-icccm4 libxcb-image0 1021s libxcb-keysyms1 libxcb-present0 libxcb-randr0 libxcb-render-util0 1021s libxcb-render0 libxcb-shape0 libxcb-shm0 libxcb-sync1 libxcb-util1 1021s libxcb-xfixes0 libxcb-xinerama0 libxcb-xinput0 libxcb-xkb1 libxcomposite1 1021s libxcursor1 libxdamage1 libxfixes3 libxft2 libxi6 libxinerama1 1021s libxkbcommon-x11-0 libxnvctrl0 libxrandr2 libxrender1 libxshmfence1 1021s libxslt1.1 libxss1 libxtst6 libxxf86vm1 mesa-libgallium ocl-icd-libopencl1 1021s pymol-data python-matplotlib-data python3-all python3-brotli python3-cctbx 1021s python3-contourpy python3-cycler python3-dateutil python3-decorator 1021s python3-dev python3-dials-data python3-flexcache python3-flexparser 1021s python3-fonttools python3-fs python3-h5py python3-h5py-serial 1021s python3-hdf5plugin python3-importlib-resources python3-iniconfig 1021s python3-kiwisolver python3-legacy-cgi python3-lxml python3-lz4 1021s python3-matplotlib python3-mpmath python3-mrcfile python3-natsort 1021s python3-numpy python3-numpy-dev python3-nxmx python3-opengl 1021s python3-ordered-set python3-packaging python3-pil python3-pil.imagetk 1021s python3-pint python3-platformdirs python3-pluggy python3-procrunner 1021s python3-pycbf python3-pymol python3-pyqt5 python3-pyqt5.qtopengl 1021s python3-pyqt5.sip python3-pytest python3-pytest-datadir python3-pytest-mock 1021s python3-pytest-regressions python3-scipy python3-six python3-sympy 1021s python3-tk python3-tqdm python3-ufolib2 python3-wxgtk4.0 python3.12-tk 1021s python3.13-dev python3.13-tk sphinx-rtd-theme-common tk8.6-blt2.5 1021s unicode-data x11-common zlib1g-dev 1021s 0 upgraded, 253 newly installed, 0 to remove and 0 not upgraded. 1021s Need to get 202 MB of archives. 1021s After this operation, 1023 MB of additional disk space will be used. 1021s Get:1 http://ftpmaster.internal/ubuntu plucky/main s390x fonts-lato all 2.015-1 [2781 kB] 1022s Get:2 http://ftpmaster.internal/ubuntu plucky/main s390x python3-numpy-dev s390x 1:2.2.3+ds-4 [147 kB] 1022s Get:3 http://ftpmaster.internal/ubuntu plucky/main s390x libblas3 s390x 3.12.1-2 [252 kB] 1022s Get:4 http://ftpmaster.internal/ubuntu plucky/main s390x libgfortran5 s390x 15-20250222-0ubuntu1 [620 kB] 1022s Get:5 http://ftpmaster.internal/ubuntu plucky/main s390x liblapack3 s390x 3.12.1-2 [2971 kB] 1022s Get:6 http://ftpmaster.internal/ubuntu plucky/main s390x python3-numpy s390x 1:2.2.3+ds-4 [4396 kB] 1022s Get:7 http://ftpmaster.internal/ubuntu plucky/main s390x libgdk-pixbuf2.0-common all 2.42.12+dfsg-2 [8004 B] 1022s Get:8 http://ftpmaster.internal/ubuntu plucky/main s390x libjpeg-turbo8 s390x 2.1.5-3ubuntu2 [147 kB] 1022s Get:9 http://ftpmaster.internal/ubuntu plucky/main s390x libjpeg8 s390x 8c-2ubuntu11 [2146 B] 1022s Get:10 http://ftpmaster.internal/ubuntu plucky/main s390x libdeflate0 s390x 1.23-1 [46.1 kB] 1022s Get:11 http://ftpmaster.internal/ubuntu plucky/main s390x libjbig0 s390x 2.1-6.1ubuntu2 [33.1 kB] 1022s Get:12 http://ftpmaster.internal/ubuntu plucky/main s390x libsharpyuv0 s390x 1.5.0-0.1 [16.7 kB] 1022s Get:13 http://ftpmaster.internal/ubuntu plucky/main s390x libwebp7 s390x 1.5.0-0.1 [210 kB] 1022s Get:14 http://ftpmaster.internal/ubuntu plucky/main s390x libtiff6 s390x 4.5.1+git230720-4ubuntu4 [217 kB] 1022s Get:15 http://ftpmaster.internal/ubuntu plucky/main s390x libgdk-pixbuf-2.0-0 s390x 2.42.12+dfsg-2 [154 kB] 1022s Get:16 http://ftpmaster.internal/ubuntu plucky/main s390x gtk-update-icon-cache s390x 4.17.5+ds-3ubuntu1 [53.2 kB] 1022s Get:17 http://ftpmaster.internal/ubuntu plucky/main s390x hicolor-icon-theme all 0.18-2 [13.3 kB] 1022s Get:18 http://ftpmaster.internal/ubuntu plucky/main s390x adwaita-icon-theme all 48~beta-3 [578 kB] 1022s Get:19 http://ftpmaster.internal/ubuntu plucky/main s390x at-spi2-common all 2.55.90-1 [9072 B] 1022s Get:20 http://ftpmaster.internal/ubuntu plucky/universe s390x libaec0 s390x 1.1.3-1 [25.7 kB] 1022s Get:21 http://ftpmaster.internal/ubuntu plucky/universe s390x libsz2 s390x 1.1.3-1 [5442 B] 1022s Get:22 http://ftpmaster.internal/ubuntu plucky/universe s390x libhdf5-310 s390x 1.14.5+repack-3 [1477 kB] 1022s Get:23 http://ftpmaster.internal/ubuntu plucky/universe s390x libhdf5-hl-310 s390x 1.14.5+repack-3 [61.0 kB] 1022s Get:24 http://ftpmaster.internal/ubuntu plucky/universe s390x liblzf1 s390x 3.6-4 [7020 B] 1022s Get:25 http://ftpmaster.internal/ubuntu plucky/universe s390x python3-h5py-serial s390x 3.13.0-1 [1185 kB] 1022s Get:26 http://ftpmaster.internal/ubuntu plucky/universe s390x python3-h5py all 3.13.0-1 [7978 B] 1022s Get:27 http://ftpmaster.internal/ubuntu plucky/main s390x libgomp1 s390x 15-20250222-0ubuntu1 [152 kB] 1022s Get:28 http://ftpmaster.internal/ubuntu plucky/main s390x libevent-pthreads-2.1-7t64 s390x 2.1.12-stable-10 [7870 B] 1022s Get:29 http://ftpmaster.internal/ubuntu plucky/main s390x librdmacm1t64 s390x 55.0-1ubuntu1 [73.7 kB] 1022s Get:30 http://ftpmaster.internal/ubuntu plucky/universe s390x libfabric1 s390x 1.17.0-3.1 [558 kB] 1022s Get:31 http://ftpmaster.internal/ubuntu plucky/universe s390x libhwloc15 s390x 2.12.0-1 [176 kB] 1023s Get:32 http://ftpmaster.internal/ubuntu plucky/universe s390x libmunge2 s390x 0.5.16-1 [15.2 kB] 1023s Get:33 http://ftpmaster.internal/ubuntu plucky/main s390x libpciaccess0 s390x 0.17-3build1 [19.0 kB] 1023s Get:34 http://ftpmaster.internal/ubuntu plucky/main s390x libxnvctrl0 s390x 510.47.03-0ubuntu4 [12.7 kB] 1023s Get:35 http://ftpmaster.internal/ubuntu plucky/universe s390x ocl-icd-libopencl1 s390x 2.3.2-1build1 [41.1 kB] 1023s Get:36 http://ftpmaster.internal/ubuntu plucky/universe s390x libhwloc-plugins s390x 2.12.0-1 [16.1 kB] 1023s Get:37 http://ftpmaster.internal/ubuntu plucky/universe s390x libpmix2t64 s390x 5.0.6-5 [715 kB] 1023s Get:38 http://ftpmaster.internal/ubuntu plucky/universe s390x libopenmpi40 s390x 5.0.7-1 [2196 kB] 1023s Get:39 http://ftpmaster.internal/ubuntu plucky/universe s390x libhdf5-openmpi-310 s390x 1.14.5+repack-3 [1539 kB] 1023s Get:40 http://ftpmaster.internal/ubuntu plucky/universe s390x bitshuffle s390x 0.5.2-1build2 [152 kB] 1023s Get:41 http://ftpmaster.internal/ubuntu plucky/main s390x libtcl8.6 s390x 8.6.16+dfsg-1 [1034 kB] 1023s Get:42 http://ftpmaster.internal/ubuntu plucky/main s390x libfreetype6 s390x 2.13.3+dfsg-1 [431 kB] 1023s Get:43 http://ftpmaster.internal/ubuntu plucky/main s390x fonts-dejavu-mono all 2.37-8 [502 kB] 1023s Get:44 http://ftpmaster.internal/ubuntu plucky/main s390x fonts-dejavu-core all 2.37-8 [835 kB] 1023s Get:45 http://ftpmaster.internal/ubuntu plucky/main s390x fontconfig-config s390x 2.15.0-2ubuntu1 [37.5 kB] 1023s Get:46 http://ftpmaster.internal/ubuntu plucky/main s390x libfontconfig1 s390x 2.15.0-2ubuntu1 [150 kB] 1023s Get:47 http://ftpmaster.internal/ubuntu plucky/main s390x libxrender1 s390x 1:0.9.10-1.1build1 [20.4 kB] 1023s Get:48 http://ftpmaster.internal/ubuntu plucky/main s390x libxft2 s390x 2.3.6-1build1 [49.6 kB] 1023s Get:49 http://ftpmaster.internal/ubuntu plucky/main s390x x11-common all 1:7.7+23ubuntu3 [21.7 kB] 1023s Get:50 http://ftpmaster.internal/ubuntu plucky/main s390x libxss1 s390x 1:1.2.3-1build3 [7396 B] 1023s Get:51 http://ftpmaster.internal/ubuntu plucky/main s390x libtk8.6 s390x 8.6.16-1 [830 kB] 1023s Get:52 http://ftpmaster.internal/ubuntu plucky/main s390x tk8.6-blt2.5 s390x 2.5.3+dfsg-8 [657 kB] 1023s Get:53 http://ftpmaster.internal/ubuntu plucky/main s390x blt s390x 2.5.3+dfsg-8 [4826 B] 1023s Get:54 http://ftpmaster.internal/ubuntu plucky/main s390x libdconf1 s390x 0.40.0-5 [40.0 kB] 1023s Get:55 http://ftpmaster.internal/ubuntu plucky/main s390x dconf-service s390x 0.40.0-5 [28.4 kB] 1023s Get:56 http://ftpmaster.internal/ubuntu plucky/main s390x dconf-gsettings-backend s390x 0.40.0-5 [22.8 kB] 1023s Get:57 http://ftpmaster.internal/ubuntu plucky/main s390x fontconfig s390x 2.15.0-2ubuntu1 [191 kB] 1023s Get:58 http://ftpmaster.internal/ubuntu plucky/main s390x fonts-font-awesome all 5.0.10+really4.7.0~dfsg-4.1 [516 kB] 1023s Get:59 http://ftpmaster.internal/ubuntu plucky/universe s390x fonts-lyx all 2.4.3-1 [171 kB] 1023s Get:60 http://ftpmaster.internal/ubuntu plucky/universe s390x libann-cctbx0 s390x 1.1.2+doc-9build1 [36.2 kB] 1023s Get:61 http://ftpmaster.internal/ubuntu plucky/universe s390x libann-cctbx-dev s390x 1.1.2+doc-9build1 [48.1 kB] 1023s Get:62 http://ftpmaster.internal/ubuntu plucky/universe s390x libantlr3c-3.4-0 s390x 3.4+dfsg-4build2 [51.3 kB] 1023s Get:63 http://ftpmaster.internal/ubuntu plucky/main s390x libasan8 s390x 15-20250222-0ubuntu1 [2970 kB] 1023s Get:64 http://ftpmaster.internal/ubuntu plucky/main s390x libatk1.0-0t64 s390x 2.55.90-1 [54.9 kB] 1023s Get:65 http://ftpmaster.internal/ubuntu plucky/main s390x libxi6 s390x 2:1.8.2-1 [35.4 kB] 1023s Get:66 http://ftpmaster.internal/ubuntu plucky/main s390x libatspi2.0-0t64 s390x 2.55.90-1 [83.8 kB] 1023s Get:67 http://ftpmaster.internal/ubuntu plucky/main s390x libatk-bridge2.0-0t64 s390x 2.55.90-1 [66.7 kB] 1023s Get:68 http://ftpmaster.internal/ubuntu plucky/main s390x libavahi-common-data s390x 0.8-16ubuntu1 [30.9 kB] 1023s Get:69 http://ftpmaster.internal/ubuntu plucky/main s390x libavahi-common3 s390x 0.8-16ubuntu1 [23.5 kB] 1023s Get:70 http://ftpmaster.internal/ubuntu plucky/main s390x libavahi-client3 s390x 0.8-16ubuntu1 [26.3 kB] 1023s Get:71 http://ftpmaster.internal/ubuntu plucky/main s390x libboost-python1.83.0 s390x 1.83.0-4.1ubuntu1 [325 kB] 1023s Get:72 http://ftpmaster.internal/ubuntu plucky/universe s390x libboost-numpy1.83.0 s390x 1.83.0-4.1ubuntu1 [243 kB] 1023s Get:73 http://ftpmaster.internal/ubuntu plucky/main s390x libitm1 s390x 15-20250222-0ubuntu1 [31.2 kB] 1023s Get:74 http://ftpmaster.internal/ubuntu plucky/main s390x libubsan1 s390x 15-20250222-0ubuntu1 [1212 kB] 1023s Get:75 http://ftpmaster.internal/ubuntu plucky/main s390x libgcc-14-dev s390x 14.2.0-17ubuntu3 [1037 kB] 1023s Get:76 http://ftpmaster.internal/ubuntu plucky/main s390x libstdc++-14-dev s390x 14.2.0-17ubuntu3 [2611 kB] 1024s Get:77 http://ftpmaster.internal/ubuntu plucky/main s390x libboost1.83-dev s390x 1.83.0-4.1ubuntu1 [10.7 MB] 1024s Get:78 http://ftpmaster.internal/ubuntu plucky/main s390x libexpat1-dev s390x 2.6.4-1 [146 kB] 1024s Get:79 http://ftpmaster.internal/ubuntu plucky/main s390x zlib1g-dev s390x 1:1.3.dfsg+really1.3.1-1ubuntu1 [898 kB] 1025s Get:80 http://ftpmaster.internal/ubuntu plucky/main s390x libpython3.13-dev s390x 3.13.2-1 [5596 kB] 1025s Get:81 http://ftpmaster.internal/ubuntu plucky/main s390x libpython3-dev s390x 3.13.2-2 [10.7 kB] 1025s Get:82 http://ftpmaster.internal/ubuntu plucky/main s390x python3.13-dev s390x 3.13.2-1 [508 kB] 1025s Get:83 http://ftpmaster.internal/ubuntu plucky/main s390x libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [328 kB] 1025s Get:84 http://ftpmaster.internal/ubuntu plucky/main s390x libjs-underscore all 1.13.4~dfsg+~1.11.4-3 [118 kB] 1025s Get:85 http://ftpmaster.internal/ubuntu plucky/main s390x libjs-sphinxdoc all 8.1.3-4 [30.9 kB] 1025s Get:86 http://ftpmaster.internal/ubuntu plucky/main s390x python3-dev s390x 3.13.2-2 [26.7 kB] 1025s Get:87 http://ftpmaster.internal/ubuntu plucky/universe s390x libboost-python1.83-dev s390x 1.83.0-4.1ubuntu1 [336 kB] 1025s Get:88 http://ftpmaster.internal/ubuntu plucky/universe s390x libboost-python-dev s390x 1.83.0.2ubuntu1 [4518 B] 1025s Get:89 http://ftpmaster.internal/ubuntu plucky/main s390x libboost-thread1.83.0 s390x 1.83.0-4.1ubuntu1 [279 kB] 1025s Get:90 http://ftpmaster.internal/ubuntu plucky/universe s390x libboost-timer1.83.0 s390x 1.83.0-4.1ubuntu1 [241 kB] 1025s Get:91 http://ftpmaster.internal/ubuntu plucky/main s390x libpixman-1-0 s390x 0.44.0-3 [201 kB] 1025s Get:92 http://ftpmaster.internal/ubuntu plucky/main s390x libxcb-render0 s390x 1.17.0-2 [17.0 kB] 1025s Get:93 http://ftpmaster.internal/ubuntu plucky/main s390x libxcb-shm0 s390x 1.17.0-2 [5862 B] 1025s Get:94 http://ftpmaster.internal/ubuntu plucky/main s390x libcairo2 s390x 1.18.2-2 [580 kB] 1025s Get:95 http://ftpmaster.internal/ubuntu plucky/main s390x libcairo-gobject2 s390x 1.18.2-2 [127 kB] 1025s Get:96 http://ftpmaster.internal/ubuntu plucky/universe s390x libcbf1t64 s390x 0.9.7+dfsg1-5build1 [391 kB] 1025s Get:97 http://ftpmaster.internal/ubuntu plucky/universe s390x libccp4-data all 8.0.0-4 [65.2 kB] 1025s Get:98 http://ftpmaster.internal/ubuntu plucky/universe s390x libccp4c0t64 s390x 8.0.0-4 [104 kB] 1025s Get:99 http://ftpmaster.internal/ubuntu plucky/universe s390x libmmdb2-0 s390x 2.0.22-1 [351 kB] 1025s Get:100 http://ftpmaster.internal/ubuntu plucky/universe s390x libccp4f0t64 s390x 8.0.0-4 [224 kB] 1025s Get:101 http://ftpmaster.internal/ubuntu plucky/universe s390x libccp4-dev s390x 8.0.0-4 [42.4 kB] 1025s Get:102 http://ftpmaster.internal/ubuntu plucky-proposed/universe s390x libcctbx0 s390x 2024.10+ds2+~3.22.1+ds1-4build2 [2003 kB] 1026s Get:103 http://ftpmaster.internal/ubuntu plucky-proposed/universe s390x libcctbx-dev s390x 2024.10+ds2+~3.22.1+ds1-4build2 [1192 kB] 1026s Get:104 http://ftpmaster.internal/ubuntu plucky/main s390x liblcms2-2 s390x 2.16-2 [175 kB] 1026s Get:105 http://ftpmaster.internal/ubuntu plucky/main s390x libcolord2 s390x 1.4.7-3 [149 kB] 1026s Get:106 http://ftpmaster.internal/ubuntu plucky/main s390x libcups2t64 s390x 2.4.11-0ubuntu2 [282 kB] 1026s Get:107 http://ftpmaster.internal/ubuntu plucky/main s390x libdatrie1 s390x 0.2.13-3build1 [20.6 kB] 1026s Get:108 http://ftpmaster.internal/ubuntu plucky/universe s390x libdouble-conversion3 s390x 3.3.1-1 [43.3 kB] 1026s Get:109 http://ftpmaster.internal/ubuntu plucky/main s390x libwayland-server0 s390x 1.23.1-3 [37.3 kB] 1026s Get:110 http://ftpmaster.internal/ubuntu plucky/main s390x libx11-xcb1 s390x 2:1.8.10-2 [7954 B] 1026s Get:111 http://ftpmaster.internal/ubuntu plucky/main s390x libxcb-dri3-0 s390x 1.17.0-2 [7616 B] 1026s Get:112 http://ftpmaster.internal/ubuntu plucky/main s390x libxcb-present0 s390x 1.17.0-2 [6244 B] 1026s Get:113 http://ftpmaster.internal/ubuntu plucky/main s390x libxcb-randr0 s390x 1.17.0-2 [19.2 kB] 1026s Get:114 http://ftpmaster.internal/ubuntu plucky/main s390x libxcb-sync1 s390x 1.17.0-2 [9488 B] 1026s Get:115 http://ftpmaster.internal/ubuntu plucky/main s390x libxcb-xfixes0 s390x 1.17.0-2 [10.5 kB] 1026s Get:116 http://ftpmaster.internal/ubuntu plucky/main s390x libxshmfence1 s390x 1.3-1build5 [4772 B] 1026s Get:117 http://ftpmaster.internal/ubuntu plucky/main s390x mesa-libgallium s390x 25.0.1-2ubuntu1 [8056 kB] 1027s Get:118 http://ftpmaster.internal/ubuntu plucky/main s390x libgbm1 s390x 25.0.1-2ubuntu1 [34.5 kB] 1027s Get:119 http://ftpmaster.internal/ubuntu plucky/main s390x libwayland-client0 s390x 1.23.1-3 [28.2 kB] 1027s Get:120 http://ftpmaster.internal/ubuntu plucky/main s390x libegl-mesa0 s390x 25.0.1-2ubuntu1 [126 kB] 1027s Get:121 http://ftpmaster.internal/ubuntu plucky/main s390x libepoxy0 s390x 1.5.10-2 [222 kB] 1027s Get:122 http://ftpmaster.internal/ubuntu plucky/main s390x libvulkan1 s390x 1.4.304.0-1 [147 kB] 1027s Get:123 http://ftpmaster.internal/ubuntu plucky/main s390x libgl1-mesa-dri s390x 25.0.1-2ubuntu1 [35.4 kB] 1027s Get:124 http://ftpmaster.internal/ubuntu plucky/main s390x libglvnd0 s390x 1.7.0-1build1 [110 kB] 1027s Get:125 http://ftpmaster.internal/ubuntu plucky/main s390x libxcb-glx0 s390x 1.17.0-2 [26.0 kB] 1027s Get:126 http://ftpmaster.internal/ubuntu plucky/main s390x libxxf86vm1 s390x 1:1.1.4-1build4 [9630 B] 1027s Get:127 http://ftpmaster.internal/ubuntu plucky/main s390x libglx-mesa0 s390x 25.0.1-2ubuntu1 [161 kB] 1027s Get:128 http://ftpmaster.internal/ubuntu plucky/main s390x libglx0 s390x 1.7.0-1build1 [32.2 kB] 1027s Get:129 http://ftpmaster.internal/ubuntu plucky/main s390x libgl1 s390x 1.7.0-1build1 [142 kB] 1027s Get:130 http://ftpmaster.internal/ubuntu plucky/universe s390x libglew2.2 s390x 2.2.0-4build1 [195 kB] 1027s Get:131 http://ftpmaster.internal/ubuntu plucky/main s390x libgraphite2-3 s390x 1.3.14-2ubuntu1 [79.8 kB] 1027s Get:132 http://ftpmaster.internal/ubuntu plucky/main s390x libharfbuzz0b s390x 10.2.0-1 [538 kB] 1027s Get:133 http://ftpmaster.internal/ubuntu plucky/main s390x libthai-data all 0.1.29-2build1 [158 kB] 1027s Get:134 http://ftpmaster.internal/ubuntu plucky/main s390x libthai0 s390x 0.1.29-2build1 [20.7 kB] 1027s Get:135 http://ftpmaster.internal/ubuntu plucky/main s390x libpango-1.0-0 s390x 1.56.1-1 [253 kB] 1027s Get:136 http://ftpmaster.internal/ubuntu plucky/main s390x libpangoft2-1.0-0 s390x 1.56.1-1 [50.3 kB] 1027s Get:137 http://ftpmaster.internal/ubuntu plucky/main s390x libpangocairo-1.0-0 s390x 1.56.1-1 [28.3 kB] 1027s Get:138 http://ftpmaster.internal/ubuntu plucky/main s390x libwayland-cursor0 s390x 1.23.1-3 [11.5 kB] 1027s Get:139 http://ftpmaster.internal/ubuntu plucky/main s390x libwayland-egl1 s390x 1.23.1-3 [6078 B] 1027s Get:140 http://ftpmaster.internal/ubuntu plucky/main s390x libxcomposite1 s390x 1:0.4.6-1 [6588 B] 1027s Get:141 http://ftpmaster.internal/ubuntu plucky/main s390x libxfixes3 s390x 1:6.0.0-2build1 [11.3 kB] 1027s Get:142 http://ftpmaster.internal/ubuntu plucky/main s390x libxcursor1 s390x 1:1.2.3-1 [23.4 kB] 1027s Get:143 http://ftpmaster.internal/ubuntu plucky/main s390x libxdamage1 s390x 1:1.1.6-1build1 [6156 B] 1027s Get:144 http://ftpmaster.internal/ubuntu plucky/main s390x libxinerama1 s390x 2:1.1.4-3build1 [6476 B] 1027s Get:145 http://ftpmaster.internal/ubuntu plucky/main s390x libxrandr2 s390x 2:1.5.4-1 [20.8 kB] 1027s Get:146 http://ftpmaster.internal/ubuntu plucky/main s390x libgtk-3-common all 3.24.48-3ubuntu1 [1424 kB] 1027s Get:147 http://ftpmaster.internal/ubuntu plucky/main s390x libgtk-3-0t64 s390x 3.24.48-3ubuntu1 [2949 kB] 1027s Get:148 http://ftpmaster.internal/ubuntu plucky/main s390x libice6 s390x 2:1.1.1-1 [45.4 kB] 1027s Get:149 http://ftpmaster.internal/ubuntu plucky/main s390x libimagequant0 s390x 2.18.0-1build1 [43.3 kB] 1027s Get:150 http://ftpmaster.internal/ubuntu plucky/main s390x libwacom-common all 2.14.0-1 [103 kB] 1027s Get:151 http://ftpmaster.internal/ubuntu plucky/main s390x libwacom9 s390x 2.14.0-1 [27.1 kB] 1027s Get:152 http://ftpmaster.internal/ubuntu plucky/main s390x libinput-bin s390x 1.27.1-1 [23.3 kB] 1027s Get:153 http://ftpmaster.internal/ubuntu plucky/main s390x libmtdev1t64 s390x 1.1.7-1 [15.6 kB] 1027s Get:154 http://ftpmaster.internal/ubuntu plucky/main s390x libinput10 s390x 1.27.1-1 [139 kB] 1027s Get:155 http://ftpmaster.internal/ubuntu plucky/universe s390x libjs-jquery-ui all 1.13.2+dfsg-1 [252 kB] 1027s Get:156 http://ftpmaster.internal/ubuntu plucky/universe s390x liblbfgsb0 s390x 3.0+dfsg.4-1build1 [32.4 kB] 1027s Get:157 http://ftpmaster.internal/ubuntu plucky/universe s390x libmd4c0 s390x 0.5.2-2 [47.7 kB] 1027s Get:158 http://ftpmaster.internal/ubuntu plucky/universe s390x libnetcdf22 s390x 1:4.9.3-1 [533 kB] 1027s Get:159 http://ftpmaster.internal/ubuntu plucky/main s390x libnotify4 s390x 0.8.4-1 [25.9 kB] 1027s Get:160 http://ftpmaster.internal/ubuntu plucky/main s390x libpcre2-16-0 s390x 10.45-1 [259 kB] 1027s Get:161 http://ftpmaster.internal/ubuntu plucky/main s390x libpcre2-32-0 s390x 10.45-1 [245 kB] 1028s Get:162 http://ftpmaster.internal/ubuntu plucky/universe s390x libqhull-r8.0 s390x 2020.2-6build1 [199 kB] 1028s Get:163 http://ftpmaster.internal/ubuntu plucky/universe s390x libqt5core5t64 s390x 5.15.15+dfsg-4ubuntu1 [2242 kB] 1028s Get:164 http://ftpmaster.internal/ubuntu plucky/universe s390x libqt5dbus5t64 s390x 5.15.15+dfsg-4ubuntu1 [240 kB] 1028s Get:165 http://ftpmaster.internal/ubuntu plucky/main s390x libegl1 s390x 1.7.0-1build1 [31.8 kB] 1028s Get:166 http://ftpmaster.internal/ubuntu plucky/universe s390x libqt5network5t64 s390x 5.15.15+dfsg-4ubuntu1 [788 kB] 1028s Get:167 http://ftpmaster.internal/ubuntu plucky/main s390x libsm6 s390x 2:1.2.4-1 [18.4 kB] 1028s Get:168 http://ftpmaster.internal/ubuntu plucky/main s390x libxcb-icccm4 s390x 0.4.2-1 [11.4 kB] 1028s Get:169 http://ftpmaster.internal/ubuntu plucky/main s390x libxcb-util1 s390x 0.4.1-1 [10.7 kB] 1028s Get:170 http://ftpmaster.internal/ubuntu plucky/main s390x libxcb-image0 s390x 0.4.0-2build1 [12.0 kB] 1028s Get:171 http://ftpmaster.internal/ubuntu plucky/main s390x libxcb-keysyms1 s390x 0.4.1-1 [8908 B] 1028s Get:172 http://ftpmaster.internal/ubuntu plucky/main s390x libxcb-render-util0 s390x 0.3.10-1 [10.3 kB] 1028s Get:173 http://ftpmaster.internal/ubuntu plucky/main s390x libxcb-shape0 s390x 1.17.0-2 [6202 B] 1028s Get:174 http://ftpmaster.internal/ubuntu plucky/main s390x libxcb-xinerama0 s390x 1.17.0-2 [5430 B] 1028s Get:175 http://ftpmaster.internal/ubuntu plucky/main s390x libxcb-xinput0 s390x 1.17.0-2 [35.8 kB] 1028s Get:176 http://ftpmaster.internal/ubuntu plucky/main s390x libxcb-xkb1 s390x 1.17.0-2 [34.5 kB] 1028s Get:177 http://ftpmaster.internal/ubuntu plucky/main s390x libxkbcommon-x11-0 s390x 1.7.0-2 [14.8 kB] 1028s Get:178 http://ftpmaster.internal/ubuntu plucky/universe s390x libqt5gui5t64 s390x 5.15.15+dfsg-4ubuntu1 [4187 kB] 1028s Get:179 http://ftpmaster.internal/ubuntu plucky/universe s390x libqt5widgets5t64 s390x 5.15.15+dfsg-4ubuntu1 [2718 kB] 1028s Get:180 http://ftpmaster.internal/ubuntu plucky/universe s390x libqt5xml5t64 s390x 5.15.15+dfsg-4ubuntu1 [129 kB] 1028s Get:181 http://ftpmaster.internal/ubuntu plucky/universe s390x libqt5designer5 s390x 5.15.15-6build1 [2900 kB] 1029s Get:182 http://ftpmaster.internal/ubuntu plucky/universe s390x libqt5sql5t64 s390x 5.15.15+dfsg-4ubuntu1 [130 kB] 1029s Get:183 http://ftpmaster.internal/ubuntu plucky/universe s390x libqt5help5 s390x 5.15.15-6build1 [172 kB] 1029s Get:184 http://ftpmaster.internal/ubuntu plucky/universe s390x libqt5opengl5t64 s390x 5.15.15+dfsg-4ubuntu1 [156 kB] 1029s Get:185 http://ftpmaster.internal/ubuntu plucky/universe s390x libqt5printsupport5t64 s390x 5.15.15+dfsg-4ubuntu1 [218 kB] 1029s Get:186 http://ftpmaster.internal/ubuntu plucky/universe s390x libqt5test5t64 s390x 5.15.15+dfsg-4ubuntu1 [156 kB] 1029s Get:187 http://ftpmaster.internal/ubuntu plucky/main s390x libraqm0 s390x 0.10.2-1 [15.8 kB] 1029s Get:188 http://ftpmaster.internal/ubuntu plucky/universe s390x libssm2 s390x 1.4.0-2build1 [97.8 kB] 1029s Get:189 http://ftpmaster.internal/ubuntu plucky/main s390x libwebpdemux2 s390x 1.5.0-0.1 [12.6 kB] 1029s Get:190 http://ftpmaster.internal/ubuntu plucky/main s390x libwebpmux3 s390x 1.5.0-0.1 [25.8 kB] 1029s Get:191 http://ftpmaster.internal/ubuntu plucky/universe s390x libwxbase3.2-1t64 s390x 3.2.6+dfsg-2ubuntu1 [915 kB] 1029s Get:192 http://ftpmaster.internal/ubuntu plucky/main s390x libxtst6 s390x 2:1.2.5-1 [13.5 kB] 1029s Get:193 http://ftpmaster.internal/ubuntu plucky/universe s390x libwxgtk3.2-1t64 s390x 3.2.6+dfsg-2ubuntu1 [4737 kB] 1029s Get:194 http://ftpmaster.internal/ubuntu plucky/universe s390x libwxgtk-gl3.2-1t64 s390x 3.2.6+dfsg-2ubuntu1 [52.9 kB] 1029s Get:195 http://ftpmaster.internal/ubuntu plucky/main s390x libxslt1.1 s390x 1.1.39-0exp1ubuntu2 [169 kB] 1029s Get:196 http://ftpmaster.internal/ubuntu plucky/universe s390x pymol-data all 3.0.0+dfsg-3build2 [1394 kB] 1029s Get:197 http://ftpmaster.internal/ubuntu plucky/universe s390x python-matplotlib-data all 3.8.3-7build1 [2934 kB] 1029s Get:198 http://ftpmaster.internal/ubuntu plucky/main s390x python3-all s390x 3.13.2-2 [886 B] 1029s Get:199 http://ftpmaster.internal/ubuntu plucky/universe s390x python3-brotli s390x 1.1.0-2build4 [380 kB] 1030s Get:200 http://ftpmaster.internal/ubuntu plucky/main s390x python3-legacy-cgi all 2.6.2-1 [16.6 kB] 1030s Get:201 http://ftpmaster.internal/ubuntu plucky/universe s390x python3-pycbf s390x 0.9.7+dfsg1-5build1 [152 kB] 1030s Get:202 http://ftpmaster.internal/ubuntu plucky/universe s390x python3-hdf5plugin all 5.0.0-1 [23.1 kB] 1030s Get:203 http://ftpmaster.internal/ubuntu plucky/main s390x python3-dateutil all 2.9.0-3 [80.2 kB] 1031s Get:204 http://ftpmaster.internal/ubuntu plucky/main s390x libopenjp2-7 s390x 2.5.0-2ubuntu3 [208 kB] 1031s Get:205 http://ftpmaster.internal/ubuntu plucky/main s390x python3-pil s390x 11.1.0-5build1 [498 kB] 1031s Get:206 http://ftpmaster.internal/ubuntu plucky/main s390x python3.12-tk s390x 3.12.9-1 [117 kB] 1031s Get:207 http://ftpmaster.internal/ubuntu plucky/main s390x python3.13-tk s390x 3.13.2-1 [108 kB] 1031s Get:208 http://ftpmaster.internal/ubuntu plucky/main s390x python3-tk s390x 3.13.1-1 [9770 B] 1031s Get:209 http://ftpmaster.internal/ubuntu plucky/universe s390x python3-pil.imagetk s390x 11.1.0-5build1 [9668 B] 1031s Get:210 http://ftpmaster.internal/ubuntu plucky/universe s390x python3-contourpy s390x 1.3.1-1build1 [197 kB] 1031s Get:211 http://ftpmaster.internal/ubuntu plucky/universe s390x python3-cycler all 0.12.1-1 [9716 B] 1031s Get:212 http://ftpmaster.internal/ubuntu plucky/main s390x python3-platformdirs all 4.3.6-1 [16.8 kB] 1031s Get:213 http://ftpmaster.internal/ubuntu plucky/universe s390x python3-fs all 2.4.16-7 [90.8 kB] 1031s Get:214 http://ftpmaster.internal/ubuntu plucky/main s390x python3-lxml s390x 5.3.1-1build1 [1370 kB] 1031s Get:215 http://ftpmaster.internal/ubuntu plucky/universe s390x python3-lz4 s390x 4.4.0+dfsg-1build1 [26.6 kB] 1031s Get:216 http://ftpmaster.internal/ubuntu plucky/main s390x python3-decorator all 5.1.1-5 [10.1 kB] 1031s Get:217 http://ftpmaster.internal/ubuntu plucky/universe s390x python3-scipy s390x 1.14.1-4ubuntu2 [18.0 MB] 1031s Get:218 http://ftpmaster.internal/ubuntu plucky/universe s390x python3-mpmath all 1.3.0-1 [425 kB] 1031s Get:219 http://ftpmaster.internal/ubuntu plucky/universe s390x python3-sympy all 1.13.3-5 [4229 kB] 1031s Get:220 http://ftpmaster.internal/ubuntu plucky/universe s390x python3-ufolib2 all 0.17.0+dfsg1-1 [33.5 kB] 1031s Get:221 http://ftpmaster.internal/ubuntu plucky/universe s390x unicode-data all 15.1.0-1 [8878 kB] 1032s Get:222 http://ftpmaster.internal/ubuntu plucky/universe s390x python3-fonttools s390x 4.55.3-2build1 [1496 kB] 1032s Get:223 http://ftpmaster.internal/ubuntu plucky/main s390x python3-importlib-resources all 6.5.2-1 [24.5 kB] 1032s Get:224 http://ftpmaster.internal/ubuntu plucky/universe s390x python3-kiwisolver s390x 1.4.7-3build1 [55.0 kB] 1032s Get:225 http://ftpmaster.internal/ubuntu plucky/main s390x python3-packaging all 24.2-1 [51.5 kB] 1032s Get:226 http://ftpmaster.internal/ubuntu plucky/universe s390x python3-matplotlib s390x 3.8.3-7build1 [17.3 MB] 1033s Get:227 http://ftpmaster.internal/ubuntu plucky/main s390x sphinx-rtd-theme-common all 3.0.2+dfsg-2 [1014 kB] 1033s Get:228 http://ftpmaster.internal/ubuntu plucky/universe s390x python3-mrcfile all 1.5.4-2 [116 kB] 1033s Get:229 http://ftpmaster.internal/ubuntu plucky/universe s390x python3-natsort all 8.0.2-2 [33.8 kB] 1033s Get:230 http://ftpmaster.internal/ubuntu plucky/main s390x python3-flexcache all 0.3-2 [13.4 kB] 1033s Get:231 http://ftpmaster.internal/ubuntu plucky/main s390x python3-flexparser all 0.4-1 [43.8 kB] 1033s Get:232 http://ftpmaster.internal/ubuntu plucky/main s390x python3-pint all 0.24.4-1 [203 kB] 1033s Get:233 http://ftpmaster.internal/ubuntu plucky/universe s390x python3-nxmx all 0.0.4-1 [16.4 kB] 1033s Get:234 http://ftpmaster.internal/ubuntu plucky/universe s390x python3-ordered-set all 4.1.0-1 [9778 B] 1033s Get:235 http://ftpmaster.internal/ubuntu plucky/universe s390x python3-procrunner all 2.3.3-2 [12.0 kB] 1033s Get:236 http://ftpmaster.internal/ubuntu plucky/main s390x libopengl0 s390x 1.7.0-1build1 [48.0 kB] 1033s Get:237 http://ftpmaster.internal/ubuntu plucky/main s390x libglu1-mesa s390x 9.0.2-1.1build1 [176 kB] 1033s Get:238 http://ftpmaster.internal/ubuntu plucky/universe s390x python3-opengl all 3.1.7+dfsg-1 [612 kB] 1033s Get:239 http://ftpmaster.internal/ubuntu plucky/universe s390x python3-pyqt5.sip s390x 12.17.0-1build1 [66.5 kB] 1033s Get:240 http://ftpmaster.internal/ubuntu plucky/universe s390x python3-pyqt5 s390x 5.15.11+dfsg-2 [2880 kB] 1033s Get:241 http://ftpmaster.internal/ubuntu plucky/universe s390x python3-pyqt5.qtopengl s390x 5.15.11+dfsg-2 [140 kB] 1033s Get:242 http://ftpmaster.internal/ubuntu plucky/universe s390x python3-pymol s390x 3.0.0+dfsg-3build2 [4251 kB] 1033s Get:243 http://ftpmaster.internal/ubuntu plucky/main s390x python3-six all 1.17.0-1 [13.2 kB] 1033s Get:244 http://ftpmaster.internal/ubuntu plucky/universe s390x python3-tqdm all 4.67.1-2 [92.5 kB] 1033s Get:245 http://ftpmaster.internal/ubuntu plucky/universe s390x python3-wxgtk4.0 s390x 4.2.2+dfsg-3build1 [7757 kB] 1034s Get:246 http://ftpmaster.internal/ubuntu plucky-proposed/universe s390x python3-cctbx s390x 2024.10+ds2+~3.22.1+ds1-4build2 [28.1 MB] 1035s Get:247 http://ftpmaster.internal/ubuntu plucky/universe s390x python3-iniconfig all 1.1.1-2 [6024 B] 1035s Get:248 http://ftpmaster.internal/ubuntu plucky/universe s390x python3-pluggy all 1.5.0-1 [21.0 kB] 1035s Get:249 http://ftpmaster.internal/ubuntu plucky/universe s390x python3-pytest all 8.3.4-1 [252 kB] 1035s Get:250 http://ftpmaster.internal/ubuntu plucky/universe s390x python3-dials-data all 2.4.0-2 [110 kB] 1035s Get:251 http://ftpmaster.internal/ubuntu plucky/universe s390x python3-pytest-datadir all 1.4.1+ds-1 [5386 B] 1035s Get:252 http://ftpmaster.internal/ubuntu plucky/universe s390x python3-pytest-mock all 3.14.0-2 [11.7 kB] 1035s Get:253 http://ftpmaster.internal/ubuntu plucky/universe s390x python3-pytest-regressions all 2.5.0+ds-2 [39.2 kB] 1036s Fetched 202 MB in 14s (14.2 MB/s) 1036s Selecting previously unselected package fonts-lato. 1036s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 56389 files and directories currently installed.) 1036s Preparing to unpack .../000-fonts-lato_2.015-1_all.deb ... 1036s Unpacking fonts-lato (2.015-1) ... 1036s Selecting previously unselected package python3-numpy-dev:s390x. 1036s Preparing to unpack .../001-python3-numpy-dev_1%3a2.2.3+ds-4_s390x.deb ... 1036s Unpacking python3-numpy-dev:s390x (1:2.2.3+ds-4) ... 1036s Selecting previously unselected package libblas3:s390x. 1036s Preparing to unpack .../002-libblas3_3.12.1-2_s390x.deb ... 1036s Unpacking libblas3:s390x (3.12.1-2) ... 1036s Selecting previously unselected package libgfortran5:s390x. 1036s Preparing to unpack .../003-libgfortran5_15-20250222-0ubuntu1_s390x.deb ... 1036s Unpacking libgfortran5:s390x (15-20250222-0ubuntu1) ... 1036s Selecting previously unselected package liblapack3:s390x. 1036s Preparing to unpack .../004-liblapack3_3.12.1-2_s390x.deb ... 1036s Unpacking liblapack3:s390x (3.12.1-2) ... 1036s Selecting previously unselected package python3-numpy. 1036s Preparing to unpack .../005-python3-numpy_1%3a2.2.3+ds-4_s390x.deb ... 1036s Unpacking python3-numpy (1:2.2.3+ds-4) ... 1036s Selecting previously unselected package libgdk-pixbuf2.0-common. 1036s Preparing to unpack .../006-libgdk-pixbuf2.0-common_2.42.12+dfsg-2_all.deb ... 1036s Unpacking libgdk-pixbuf2.0-common (2.42.12+dfsg-2) ... 1036s Selecting previously unselected package libjpeg-turbo8:s390x. 1036s Preparing to unpack .../007-libjpeg-turbo8_2.1.5-3ubuntu2_s390x.deb ... 1036s Unpacking libjpeg-turbo8:s390x (2.1.5-3ubuntu2) ... 1037s Selecting previously unselected package libjpeg8:s390x. 1037s Preparing to unpack .../008-libjpeg8_8c-2ubuntu11_s390x.deb ... 1037s Unpacking libjpeg8:s390x (8c-2ubuntu11) ... 1037s Selecting previously unselected package libdeflate0:s390x. 1037s Preparing to unpack .../009-libdeflate0_1.23-1_s390x.deb ... 1037s Unpacking libdeflate0:s390x (1.23-1) ... 1037s Selecting previously unselected package libjbig0:s390x. 1037s Preparing to unpack .../010-libjbig0_2.1-6.1ubuntu2_s390x.deb ... 1037s Unpacking libjbig0:s390x (2.1-6.1ubuntu2) ... 1037s Selecting previously unselected package libsharpyuv0:s390x. 1037s Preparing to unpack .../011-libsharpyuv0_1.5.0-0.1_s390x.deb ... 1037s Unpacking libsharpyuv0:s390x (1.5.0-0.1) ... 1037s Selecting previously unselected package libwebp7:s390x. 1037s Preparing to unpack .../012-libwebp7_1.5.0-0.1_s390x.deb ... 1037s Unpacking libwebp7:s390x (1.5.0-0.1) ... 1037s Selecting previously unselected package libtiff6:s390x. 1037s Preparing to unpack .../013-libtiff6_4.5.1+git230720-4ubuntu4_s390x.deb ... 1037s Unpacking libtiff6:s390x (4.5.1+git230720-4ubuntu4) ... 1037s Selecting previously unselected package libgdk-pixbuf-2.0-0:s390x. 1037s Preparing to unpack .../014-libgdk-pixbuf-2.0-0_2.42.12+dfsg-2_s390x.deb ... 1037s Unpacking libgdk-pixbuf-2.0-0:s390x (2.42.12+dfsg-2) ... 1037s Selecting previously unselected package gtk-update-icon-cache. 1037s Preparing to unpack .../015-gtk-update-icon-cache_4.17.5+ds-3ubuntu1_s390x.deb ... 1037s No diversion 'diversion of /usr/sbin/update-icon-caches to /usr/sbin/update-icon-caches.gtk2 by libgtk-3-bin', none removed. 1037s No diversion 'diversion of /usr/share/man/man8/update-icon-caches.8.gz to /usr/share/man/man8/update-icon-caches.gtk2.8.gz by libgtk-3-bin', none removed. 1037s Unpacking gtk-update-icon-cache (4.17.5+ds-3ubuntu1) ... 1037s Selecting previously unselected package hicolor-icon-theme. 1037s Preparing to unpack .../016-hicolor-icon-theme_0.18-2_all.deb ... 1037s Unpacking hicolor-icon-theme (0.18-2) ... 1037s Selecting previously unselected package adwaita-icon-theme. 1037s Preparing to unpack .../017-adwaita-icon-theme_48~beta-3_all.deb ... 1037s Unpacking adwaita-icon-theme (48~beta-3) ... 1037s Selecting previously unselected package at-spi2-common. 1037s Preparing to unpack .../018-at-spi2-common_2.55.90-1_all.deb ... 1037s Unpacking at-spi2-common (2.55.90-1) ... 1037s Selecting previously unselected package libaec0:s390x. 1037s Preparing to unpack .../019-libaec0_1.1.3-1_s390x.deb ... 1037s Unpacking libaec0:s390x (1.1.3-1) ... 1037s Selecting previously unselected package libsz2:s390x. 1037s Preparing to unpack .../020-libsz2_1.1.3-1_s390x.deb ... 1037s Unpacking libsz2:s390x (1.1.3-1) ... 1037s Selecting previously unselected package libhdf5-310:s390x. 1037s Preparing to unpack .../021-libhdf5-310_1.14.5+repack-3_s390x.deb ... 1037s Unpacking libhdf5-310:s390x (1.14.5+repack-3) ... 1037s Selecting previously unselected package libhdf5-hl-310:s390x. 1037s Preparing to unpack .../022-libhdf5-hl-310_1.14.5+repack-3_s390x.deb ... 1037s Unpacking libhdf5-hl-310:s390x (1.14.5+repack-3) ... 1037s Selecting previously unselected package liblzf1:s390x. 1037s Preparing to unpack .../023-liblzf1_3.6-4_s390x.deb ... 1037s Unpacking liblzf1:s390x (3.6-4) ... 1037s Selecting previously unselected package python3-h5py-serial. 1037s Preparing to unpack .../024-python3-h5py-serial_3.13.0-1_s390x.deb ... 1037s Unpacking python3-h5py-serial (3.13.0-1) ... 1037s Selecting previously unselected package python3-h5py. 1037s Preparing to unpack .../025-python3-h5py_3.13.0-1_all.deb ... 1037s Unpacking python3-h5py (3.13.0-1) ... 1037s Selecting previously unselected package libgomp1:s390x. 1037s Preparing to unpack .../026-libgomp1_15-20250222-0ubuntu1_s390x.deb ... 1037s Unpacking libgomp1:s390x (15-20250222-0ubuntu1) ... 1037s Selecting previously unselected package libevent-pthreads-2.1-7t64:s390x. 1037s Preparing to unpack .../027-libevent-pthreads-2.1-7t64_2.1.12-stable-10_s390x.deb ... 1037s Unpacking libevent-pthreads-2.1-7t64:s390x (2.1.12-stable-10) ... 1037s Selecting previously unselected package librdmacm1t64:s390x. 1037s Preparing to unpack .../028-librdmacm1t64_55.0-1ubuntu1_s390x.deb ... 1037s Unpacking librdmacm1t64:s390x (55.0-1ubuntu1) ... 1037s Selecting previously unselected package libfabric1:s390x. 1037s Preparing to unpack .../029-libfabric1_1.17.0-3.1_s390x.deb ... 1037s Unpacking libfabric1:s390x (1.17.0-3.1) ... 1037s Selecting previously unselected package libhwloc15:s390x. 1037s Preparing to unpack .../030-libhwloc15_2.12.0-1_s390x.deb ... 1037s Unpacking libhwloc15:s390x (2.12.0-1) ... 1037s Selecting previously unselected package libmunge2:s390x. 1037s Preparing to unpack .../031-libmunge2_0.5.16-1_s390x.deb ... 1037s Unpacking libmunge2:s390x (0.5.16-1) ... 1037s Selecting previously unselected package libpciaccess0:s390x. 1037s Preparing to unpack .../032-libpciaccess0_0.17-3build1_s390x.deb ... 1037s Unpacking libpciaccess0:s390x (0.17-3build1) ... 1037s Selecting previously unselected package libxnvctrl0:s390x. 1037s Preparing to unpack .../033-libxnvctrl0_510.47.03-0ubuntu4_s390x.deb ... 1037s Unpacking libxnvctrl0:s390x (510.47.03-0ubuntu4) ... 1037s Selecting previously unselected package ocl-icd-libopencl1:s390x. 1037s Preparing to unpack .../034-ocl-icd-libopencl1_2.3.2-1build1_s390x.deb ... 1037s Unpacking ocl-icd-libopencl1:s390x (2.3.2-1build1) ... 1037s Selecting previously unselected package libhwloc-plugins:s390x. 1037s Preparing to unpack .../035-libhwloc-plugins_2.12.0-1_s390x.deb ... 1037s Unpacking libhwloc-plugins:s390x (2.12.0-1) ... 1037s Selecting previously unselected package libpmix2t64:s390x. 1037s Preparing to unpack .../036-libpmix2t64_5.0.6-5_s390x.deb ... 1037s Unpacking libpmix2t64:s390x (5.0.6-5) ... 1037s Selecting previously unselected package libopenmpi40:s390x. 1037s Preparing to unpack .../037-libopenmpi40_5.0.7-1_s390x.deb ... 1037s Unpacking libopenmpi40:s390x (5.0.7-1) ... 1037s Selecting previously unselected package libhdf5-openmpi-310:s390x. 1037s Preparing to unpack .../038-libhdf5-openmpi-310_1.14.5+repack-3_s390x.deb ... 1037s Unpacking libhdf5-openmpi-310:s390x (1.14.5+repack-3) ... 1037s Selecting previously unselected package bitshuffle. 1037s Preparing to unpack .../039-bitshuffle_0.5.2-1build2_s390x.deb ... 1037s Unpacking bitshuffle (0.5.2-1build2) ... 1037s Selecting previously unselected package libtcl8.6:s390x. 1037s Preparing to unpack .../040-libtcl8.6_8.6.16+dfsg-1_s390x.deb ... 1037s Unpacking libtcl8.6:s390x (8.6.16+dfsg-1) ... 1037s Selecting previously unselected package libfreetype6:s390x. 1037s Preparing to unpack .../041-libfreetype6_2.13.3+dfsg-1_s390x.deb ... 1037s Unpacking libfreetype6:s390x (2.13.3+dfsg-1) ... 1037s Selecting previously unselected package fonts-dejavu-mono. 1037s Preparing to unpack .../042-fonts-dejavu-mono_2.37-8_all.deb ... 1037s Unpacking fonts-dejavu-mono (2.37-8) ... 1037s Selecting previously unselected package fonts-dejavu-core. 1037s Preparing to unpack .../043-fonts-dejavu-core_2.37-8_all.deb ... 1037s Unpacking fonts-dejavu-core (2.37-8) ... 1037s Selecting previously unselected package fontconfig-config. 1037s Preparing to unpack .../044-fontconfig-config_2.15.0-2ubuntu1_s390x.deb ... 1037s Unpacking fontconfig-config (2.15.0-2ubuntu1) ... 1037s Selecting previously unselected package libfontconfig1:s390x. 1037s Preparing to unpack .../045-libfontconfig1_2.15.0-2ubuntu1_s390x.deb ... 1037s Unpacking libfontconfig1:s390x (2.15.0-2ubuntu1) ... 1037s Selecting previously unselected package libxrender1:s390x. 1037s Preparing to unpack .../046-libxrender1_1%3a0.9.10-1.1build1_s390x.deb ... 1037s Unpacking libxrender1:s390x (1:0.9.10-1.1build1) ... 1037s Selecting previously unselected package libxft2:s390x. 1037s Preparing to unpack .../047-libxft2_2.3.6-1build1_s390x.deb ... 1037s Unpacking libxft2:s390x (2.3.6-1build1) ... 1037s Selecting previously unselected package x11-common. 1037s Preparing to unpack .../048-x11-common_1%3a7.7+23ubuntu3_all.deb ... 1037s Unpacking x11-common (1:7.7+23ubuntu3) ... 1037s Selecting previously unselected package libxss1:s390x. 1037s Preparing to unpack .../049-libxss1_1%3a1.2.3-1build3_s390x.deb ... 1037s Unpacking libxss1:s390x (1:1.2.3-1build3) ... 1037s Selecting previously unselected package libtk8.6:s390x. 1037s Preparing to unpack .../050-libtk8.6_8.6.16-1_s390x.deb ... 1037s Unpacking libtk8.6:s390x (8.6.16-1) ... 1037s Selecting previously unselected package tk8.6-blt2.5. 1037s Preparing to unpack .../051-tk8.6-blt2.5_2.5.3+dfsg-8_s390x.deb ... 1037s Unpacking tk8.6-blt2.5 (2.5.3+dfsg-8) ... 1037s Selecting previously unselected package blt. 1037s Preparing to unpack .../052-blt_2.5.3+dfsg-8_s390x.deb ... 1037s Unpacking blt (2.5.3+dfsg-8) ... 1037s Selecting previously unselected package libdconf1:s390x. 1037s Preparing to unpack .../053-libdconf1_0.40.0-5_s390x.deb ... 1037s Unpacking libdconf1:s390x (0.40.0-5) ... 1037s Selecting previously unselected package dconf-service. 1037s Preparing to unpack .../054-dconf-service_0.40.0-5_s390x.deb ... 1037s Unpacking dconf-service (0.40.0-5) ... 1037s Selecting previously unselected package dconf-gsettings-backend:s390x. 1037s Preparing to unpack .../055-dconf-gsettings-backend_0.40.0-5_s390x.deb ... 1037s Unpacking dconf-gsettings-backend:s390x (0.40.0-5) ... 1037s Selecting previously unselected package fontconfig. 1037s Preparing to unpack .../056-fontconfig_2.15.0-2ubuntu1_s390x.deb ... 1037s Unpacking fontconfig (2.15.0-2ubuntu1) ... 1037s Selecting previously unselected package fonts-font-awesome. 1037s Preparing to unpack .../057-fonts-font-awesome_5.0.10+really4.7.0~dfsg-4.1_all.deb ... 1037s Unpacking fonts-font-awesome (5.0.10+really4.7.0~dfsg-4.1) ... 1037s Selecting previously unselected package fonts-lyx. 1037s Preparing to unpack .../058-fonts-lyx_2.4.3-1_all.deb ... 1037s Unpacking fonts-lyx (2.4.3-1) ... 1037s Selecting previously unselected package libann-cctbx0. 1037s Preparing to unpack .../059-libann-cctbx0_1.1.2+doc-9build1_s390x.deb ... 1037s Unpacking libann-cctbx0 (1.1.2+doc-9build1) ... 1037s Selecting previously unselected package libann-cctbx-dev. 1037s Preparing to unpack .../060-libann-cctbx-dev_1.1.2+doc-9build1_s390x.deb ... 1037s Unpacking libann-cctbx-dev (1.1.2+doc-9build1) ... 1037s Selecting previously unselected package libantlr3c-3.4-0:s390x. 1037s Preparing to unpack .../061-libantlr3c-3.4-0_3.4+dfsg-4build2_s390x.deb ... 1037s Unpacking libantlr3c-3.4-0:s390x (3.4+dfsg-4build2) ... 1037s Selecting previously unselected package libasan8:s390x. 1037s Preparing to unpack .../062-libasan8_15-20250222-0ubuntu1_s390x.deb ... 1037s Unpacking libasan8:s390x (15-20250222-0ubuntu1) ... 1037s Selecting previously unselected package libatk1.0-0t64:s390x. 1037s Preparing to unpack .../063-libatk1.0-0t64_2.55.90-1_s390x.deb ... 1037s Unpacking libatk1.0-0t64:s390x (2.55.90-1) ... 1037s Selecting previously unselected package libxi6:s390x. 1037s Preparing to unpack .../064-libxi6_2%3a1.8.2-1_s390x.deb ... 1037s Unpacking libxi6:s390x (2:1.8.2-1) ... 1037s Selecting previously unselected package libatspi2.0-0t64:s390x. 1037s Preparing to unpack .../065-libatspi2.0-0t64_2.55.90-1_s390x.deb ... 1037s Unpacking libatspi2.0-0t64:s390x (2.55.90-1) ... 1037s Selecting previously unselected package libatk-bridge2.0-0t64:s390x. 1037s Preparing to unpack .../066-libatk-bridge2.0-0t64_2.55.90-1_s390x.deb ... 1037s Unpacking libatk-bridge2.0-0t64:s390x (2.55.90-1) ... 1038s Selecting previously unselected package libavahi-common-data:s390x. 1038s Preparing to unpack .../067-libavahi-common-data_0.8-16ubuntu1_s390x.deb ... 1038s Unpacking libavahi-common-data:s390x (0.8-16ubuntu1) ... 1038s Selecting previously unselected package libavahi-common3:s390x. 1038s Preparing to unpack .../068-libavahi-common3_0.8-16ubuntu1_s390x.deb ... 1038s Unpacking libavahi-common3:s390x (0.8-16ubuntu1) ... 1038s Selecting previously unselected package libavahi-client3:s390x. 1038s Preparing to unpack .../069-libavahi-client3_0.8-16ubuntu1_s390x.deb ... 1038s Unpacking libavahi-client3:s390x (0.8-16ubuntu1) ... 1038s Selecting previously unselected package libboost-python1.83.0. 1038s Preparing to unpack .../070-libboost-python1.83.0_1.83.0-4.1ubuntu1_s390x.deb ... 1038s Unpacking libboost-python1.83.0 (1.83.0-4.1ubuntu1) ... 1038s Selecting previously unselected package libboost-numpy1.83.0. 1038s Preparing to unpack .../071-libboost-numpy1.83.0_1.83.0-4.1ubuntu1_s390x.deb ... 1038s Unpacking libboost-numpy1.83.0 (1.83.0-4.1ubuntu1) ... 1038s Selecting previously unselected package libitm1:s390x. 1038s Preparing to unpack .../072-libitm1_15-20250222-0ubuntu1_s390x.deb ... 1038s Unpacking libitm1:s390x (15-20250222-0ubuntu1) ... 1038s Selecting previously unselected package libubsan1:s390x. 1038s Preparing to unpack .../073-libubsan1_15-20250222-0ubuntu1_s390x.deb ... 1038s Unpacking libubsan1:s390x (15-20250222-0ubuntu1) ... 1038s Selecting previously unselected package libgcc-14-dev:s390x. 1038s Preparing to unpack .../074-libgcc-14-dev_14.2.0-17ubuntu3_s390x.deb ... 1038s Unpacking libgcc-14-dev:s390x (14.2.0-17ubuntu3) ... 1038s Selecting previously unselected package libstdc++-14-dev:s390x. 1038s Preparing to unpack .../075-libstdc++-14-dev_14.2.0-17ubuntu3_s390x.deb ... 1038s Unpacking libstdc++-14-dev:s390x (14.2.0-17ubuntu3) ... 1038s Selecting previously unselected package libboost1.83-dev:s390x. 1038s Preparing to unpack .../076-libboost1.83-dev_1.83.0-4.1ubuntu1_s390x.deb ... 1038s Unpacking libboost1.83-dev:s390x (1.83.0-4.1ubuntu1) ... 1039s Selecting previously unselected package libexpat1-dev:s390x. 1039s Preparing to unpack .../077-libexpat1-dev_2.6.4-1_s390x.deb ... 1039s Unpacking libexpat1-dev:s390x (2.6.4-1) ... 1039s Selecting previously unselected package zlib1g-dev:s390x. 1039s Preparing to unpack .../078-zlib1g-dev_1%3a1.3.dfsg+really1.3.1-1ubuntu1_s390x.deb ... 1039s Unpacking zlib1g-dev:s390x (1:1.3.dfsg+really1.3.1-1ubuntu1) ... 1039s Selecting previously unselected package libpython3.13-dev:s390x. 1039s Preparing to unpack .../079-libpython3.13-dev_3.13.2-1_s390x.deb ... 1039s Unpacking libpython3.13-dev:s390x (3.13.2-1) ... 1039s Selecting previously unselected package libpython3-dev:s390x. 1039s Preparing to unpack .../080-libpython3-dev_3.13.2-2_s390x.deb ... 1039s Unpacking libpython3-dev:s390x (3.13.2-2) ... 1039s Selecting previously unselected package python3.13-dev. 1039s Preparing to unpack .../081-python3.13-dev_3.13.2-1_s390x.deb ... 1039s Unpacking python3.13-dev (3.13.2-1) ... 1039s Selecting previously unselected package libjs-jquery. 1039s Preparing to unpack .../082-libjs-jquery_3.6.1+dfsg+~3.5.14-1_all.deb ... 1039s Unpacking libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... 1039s Selecting previously unselected package libjs-underscore. 1039s Preparing to unpack .../083-libjs-underscore_1.13.4~dfsg+~1.11.4-3_all.deb ... 1039s Unpacking libjs-underscore (1.13.4~dfsg+~1.11.4-3) ... 1039s Selecting previously unselected package libjs-sphinxdoc. 1039s Preparing to unpack .../084-libjs-sphinxdoc_8.1.3-4_all.deb ... 1039s Unpacking libjs-sphinxdoc (8.1.3-4) ... 1039s Selecting previously unselected package python3-dev. 1039s Preparing to unpack .../085-python3-dev_3.13.2-2_s390x.deb ... 1039s Unpacking python3-dev (3.13.2-2) ... 1039s Selecting previously unselected package libboost-python1.83-dev. 1039s Preparing to unpack .../086-libboost-python1.83-dev_1.83.0-4.1ubuntu1_s390x.deb ... 1039s Unpacking libboost-python1.83-dev (1.83.0-4.1ubuntu1) ... 1039s Selecting previously unselected package libboost-python-dev. 1039s Preparing to unpack .../087-libboost-python-dev_1.83.0.2ubuntu1_s390x.deb ... 1039s Unpacking libboost-python-dev (1.83.0.2ubuntu1) ... 1039s Selecting previously unselected package libboost-thread1.83.0:s390x. 1039s Preparing to unpack .../088-libboost-thread1.83.0_1.83.0-4.1ubuntu1_s390x.deb ... 1039s Unpacking libboost-thread1.83.0:s390x (1.83.0-4.1ubuntu1) ... 1039s Selecting previously unselected package libboost-timer1.83.0:s390x. 1039s Preparing to unpack .../089-libboost-timer1.83.0_1.83.0-4.1ubuntu1_s390x.deb ... 1039s Unpacking libboost-timer1.83.0:s390x (1.83.0-4.1ubuntu1) ... 1039s Selecting previously unselected package libpixman-1-0:s390x. 1039s Preparing to unpack .../090-libpixman-1-0_0.44.0-3_s390x.deb ... 1039s Unpacking libpixman-1-0:s390x (0.44.0-3) ... 1039s Selecting previously unselected package libxcb-render0:s390x. 1039s Preparing to unpack .../091-libxcb-render0_1.17.0-2_s390x.deb ... 1039s Unpacking libxcb-render0:s390x (1.17.0-2) ... 1039s Selecting previously unselected package libxcb-shm0:s390x. 1039s Preparing to unpack .../092-libxcb-shm0_1.17.0-2_s390x.deb ... 1039s Unpacking libxcb-shm0:s390x (1.17.0-2) ... 1039s Selecting previously unselected package libcairo2:s390x. 1039s Preparing to unpack .../093-libcairo2_1.18.2-2_s390x.deb ... 1039s Unpacking libcairo2:s390x (1.18.2-2) ... 1039s Selecting previously unselected package libcairo-gobject2:s390x. 1039s Preparing to unpack .../094-libcairo-gobject2_1.18.2-2_s390x.deb ... 1039s Unpacking libcairo-gobject2:s390x (1.18.2-2) ... 1039s Selecting previously unselected package libcbf1t64:s390x. 1039s Preparing to unpack .../095-libcbf1t64_0.9.7+dfsg1-5build1_s390x.deb ... 1039s Unpacking libcbf1t64:s390x (0.9.7+dfsg1-5build1) ... 1039s Selecting previously unselected package libccp4-data. 1039s Preparing to unpack .../096-libccp4-data_8.0.0-4_all.deb ... 1039s Unpacking libccp4-data (8.0.0-4) ... 1039s Selecting previously unselected package libccp4c0t64:s390x. 1039s Preparing to unpack .../097-libccp4c0t64_8.0.0-4_s390x.deb ... 1039s Unpacking libccp4c0t64:s390x (8.0.0-4) ... 1039s Selecting previously unselected package libmmdb2-0:s390x. 1039s Preparing to unpack .../098-libmmdb2-0_2.0.22-1_s390x.deb ... 1039s Unpacking libmmdb2-0:s390x (2.0.22-1) ... 1039s Selecting previously unselected package libccp4f0t64:s390x. 1039s Preparing to unpack .../099-libccp4f0t64_8.0.0-4_s390x.deb ... 1039s Unpacking libccp4f0t64:s390x (8.0.0-4) ... 1039s Selecting previously unselected package libccp4-dev:s390x. 1039s Preparing to unpack .../100-libccp4-dev_8.0.0-4_s390x.deb ... 1039s Unpacking libccp4-dev:s390x (8.0.0-4) ... 1039s Selecting previously unselected package libcctbx0. 1039s Preparing to unpack .../101-libcctbx0_2024.10+ds2+~3.22.1+ds1-4build2_s390x.deb ... 1039s Unpacking libcctbx0 (2024.10+ds2+~3.22.1+ds1-4build2) ... 1039s Selecting previously unselected package libcctbx-dev. 1039s Preparing to unpack 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libwayland-cursor0:s390x (1.23.1-3) ... 1041s Selecting previously unselected package libwayland-egl1:s390x. 1041s Preparing to unpack .../138-libwayland-egl1_1.23.1-3_s390x.deb ... 1041s Unpacking libwayland-egl1:s390x (1.23.1-3) ... 1041s Selecting previously unselected package libxcomposite1:s390x. 1041s Preparing to unpack .../139-libxcomposite1_1%3a0.4.6-1_s390x.deb ... 1041s Unpacking libxcomposite1:s390x (1:0.4.6-1) ... 1041s Selecting previously unselected package libxfixes3:s390x. 1041s Preparing to unpack .../140-libxfixes3_1%3a6.0.0-2build1_s390x.deb ... 1041s Unpacking libxfixes3:s390x (1:6.0.0-2build1) ... 1041s Selecting previously unselected package libxcursor1:s390x. 1041s Preparing to unpack .../141-libxcursor1_1%3a1.2.3-1_s390x.deb ... 1041s Unpacking libxcursor1:s390x (1:1.2.3-1) ... 1041s Selecting previously unselected package libxdamage1:s390x. 1041s Preparing to unpack .../142-libxdamage1_1%3a1.1.6-1build1_s390x.deb ... 1041s Unpacking libxdamage1:s390x 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previously unselected package libimagequant0:s390x. 1041s Preparing to unpack .../148-libimagequant0_2.18.0-1build1_s390x.deb ... 1041s Unpacking libimagequant0:s390x (2.18.0-1build1) ... 1041s Selecting previously unselected package libwacom-common. 1041s Preparing to unpack .../149-libwacom-common_2.14.0-1_all.deb ... 1041s Unpacking libwacom-common (2.14.0-1) ... 1041s Selecting previously unselected package libwacom9:s390x. 1041s Preparing to unpack .../150-libwacom9_2.14.0-1_s390x.deb ... 1041s Unpacking libwacom9:s390x (2.14.0-1) ... 1041s Selecting previously unselected package libinput-bin. 1041s Preparing to unpack .../151-libinput-bin_1.27.1-1_s390x.deb ... 1041s Unpacking libinput-bin (1.27.1-1) ... 1041s Selecting previously unselected package libmtdev1t64:s390x. 1041s Preparing to unpack .../152-libmtdev1t64_1.1.7-1_s390x.deb ... 1041s Unpacking libmtdev1t64:s390x (1.1.7-1) ... 1041s Selecting previously unselected package libinput10:s390x. 1041s Preparing to unpack .../153-libinput10_1.27.1-1_s390x.deb ... 1041s Unpacking libinput10:s390x (1.27.1-1) ... 1041s Selecting previously unselected package libjs-jquery-ui. 1041s Preparing to unpack .../154-libjs-jquery-ui_1.13.2+dfsg-1_all.deb ... 1041s Unpacking libjs-jquery-ui (1.13.2+dfsg-1) ... 1041s Selecting previously unselected package liblbfgsb0:s390x. 1041s Preparing to unpack .../155-liblbfgsb0_3.0+dfsg.4-1build1_s390x.deb ... 1041s Unpacking liblbfgsb0:s390x (3.0+dfsg.4-1build1) ... 1041s Selecting previously unselected package libmd4c0:s390x. 1041s Preparing to unpack .../156-libmd4c0_0.5.2-2_s390x.deb ... 1041s Unpacking libmd4c0:s390x (0.5.2-2) ... 1041s Selecting previously unselected package libnetcdf22:s390x. 1041s Preparing to unpack .../157-libnetcdf22_1%3a4.9.3-1_s390x.deb ... 1041s Unpacking libnetcdf22:s390x (1:4.9.3-1) ... 1041s Selecting previously unselected package libnotify4:s390x. 1041s Preparing to unpack .../158-libnotify4_0.8.4-1_s390x.deb ... 1041s Unpacking libnotify4:s390x (0.8.4-1) ... 1041s Selecting previously unselected package libpcre2-16-0:s390x. 1041s Preparing to unpack .../159-libpcre2-16-0_10.45-1_s390x.deb ... 1041s Unpacking libpcre2-16-0:s390x (10.45-1) ... 1041s Selecting previously unselected package libpcre2-32-0:s390x. 1041s Preparing to unpack .../160-libpcre2-32-0_10.45-1_s390x.deb ... 1041s Unpacking libpcre2-32-0:s390x (10.45-1) ... 1041s Selecting previously unselected package libqhull-r8.0:s390x. 1041s Preparing to unpack .../161-libqhull-r8.0_2020.2-6build1_s390x.deb ... 1041s Unpacking libqhull-r8.0:s390x (2020.2-6build1) ... 1041s Selecting previously unselected package libqt5core5t64:s390x. 1041s Preparing to unpack .../162-libqt5core5t64_5.15.15+dfsg-4ubuntu1_s390x.deb ... 1041s Unpacking libqt5core5t64:s390x (5.15.15+dfsg-4ubuntu1) ... 1041s Selecting previously unselected package libqt5dbus5t64:s390x. 1041s Preparing to unpack .../163-libqt5dbus5t64_5.15.15+dfsg-4ubuntu1_s390x.deb ... 1041s Unpacking libqt5dbus5t64:s390x (5.15.15+dfsg-4ubuntu1) ... 1041s Selecting previously unselected package libegl1:s390x. 1041s Preparing to unpack .../164-libegl1_1.7.0-1build1_s390x.deb ... 1041s Unpacking libegl1:s390x (1.7.0-1build1) ... 1041s Selecting previously unselected package libqt5network5t64:s390x. 1041s Preparing to unpack .../165-libqt5network5t64_5.15.15+dfsg-4ubuntu1_s390x.deb ... 1041s Unpacking libqt5network5t64:s390x (5.15.15+dfsg-4ubuntu1) ... 1041s Selecting previously unselected package libsm6:s390x. 1041s Preparing to unpack .../166-libsm6_2%3a1.2.4-1_s390x.deb ... 1041s Unpacking libsm6:s390x (2:1.2.4-1) ... 1041s Selecting previously unselected package libxcb-icccm4:s390x. 1041s Preparing to unpack .../167-libxcb-icccm4_0.4.2-1_s390x.deb ... 1041s Unpacking libxcb-icccm4:s390x (0.4.2-1) ... 1041s Selecting previously unselected package libxcb-util1:s390x. 1041s Preparing to unpack .../168-libxcb-util1_0.4.1-1_s390x.deb ... 1041s Unpacking libxcb-util1:s390x (0.4.1-1) ... 1041s Selecting previously unselected package libxcb-image0:s390x. 1041s Preparing to unpack .../169-libxcb-image0_0.4.0-2build1_s390x.deb ... 1041s Unpacking libxcb-image0:s390x (0.4.0-2build1) ... 1041s Selecting previously unselected package libxcb-keysyms1:s390x. 1041s Preparing to unpack .../170-libxcb-keysyms1_0.4.1-1_s390x.deb ... 1041s Unpacking libxcb-keysyms1:s390x (0.4.1-1) ... 1041s Selecting previously unselected package libxcb-render-util0:s390x. 1041s Preparing to unpack .../171-libxcb-render-util0_0.3.10-1_s390x.deb ... 1041s Unpacking libxcb-render-util0:s390x (0.3.10-1) ... 1041s Selecting previously unselected package libxcb-shape0:s390x. 1041s Preparing to unpack .../172-libxcb-shape0_1.17.0-2_s390x.deb ... 1041s Unpacking libxcb-shape0:s390x (1.17.0-2) ... 1041s Selecting previously unselected package libxcb-xinerama0:s390x. 1041s Preparing to unpack .../173-libxcb-xinerama0_1.17.0-2_s390x.deb ... 1041s Unpacking libxcb-xinerama0:s390x (1.17.0-2) ... 1041s Selecting previously unselected package libxcb-xinput0:s390x. 1041s Preparing to unpack .../174-libxcb-xinput0_1.17.0-2_s390x.deb ... 1041s Unpacking libxcb-xinput0:s390x (1.17.0-2) ... 1041s Selecting previously unselected package libxcb-xkb1:s390x. 1041s Preparing to unpack .../175-libxcb-xkb1_1.17.0-2_s390x.deb ... 1041s Unpacking libxcb-xkb1:s390x (1.17.0-2) ... 1041s Selecting previously unselected package libxkbcommon-x11-0:s390x. 1041s Preparing to unpack .../176-libxkbcommon-x11-0_1.7.0-2_s390x.deb ... 1041s Unpacking libxkbcommon-x11-0:s390x (1.7.0-2) ... 1041s Selecting previously unselected package libqt5gui5t64:s390x. 1041s Preparing to unpack .../177-libqt5gui5t64_5.15.15+dfsg-4ubuntu1_s390x.deb ... 1041s Unpacking libqt5gui5t64:s390x (5.15.15+dfsg-4ubuntu1) ... 1041s Selecting previously unselected package libqt5widgets5t64:s390x. 1041s Preparing to unpack .../178-libqt5widgets5t64_5.15.15+dfsg-4ubuntu1_s390x.deb ... 1041s Unpacking libqt5widgets5t64:s390x 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.../183-libqt5opengl5t64_5.15.15+dfsg-4ubuntu1_s390x.deb ... 1041s Unpacking libqt5opengl5t64:s390x (5.15.15+dfsg-4ubuntu1) ... 1041s Selecting previously unselected package libqt5printsupport5t64:s390x. 1041s Preparing to unpack .../184-libqt5printsupport5t64_5.15.15+dfsg-4ubuntu1_s390x.deb ... 1041s Unpacking libqt5printsupport5t64:s390x (5.15.15+dfsg-4ubuntu1) ... 1041s Selecting previously unselected package libqt5test5t64:s390x. 1041s Preparing to unpack .../185-libqt5test5t64_5.15.15+dfsg-4ubuntu1_s390x.deb ... 1041s Unpacking libqt5test5t64:s390x (5.15.15+dfsg-4ubuntu1) ... 1041s Selecting previously unselected package libraqm0:s390x. 1041s Preparing to unpack .../186-libraqm0_0.10.2-1_s390x.deb ... 1041s Unpacking libraqm0:s390x (0.10.2-1) ... 1041s Selecting previously unselected package libssm2:s390x. 1041s Preparing to unpack .../187-libssm2_1.4.0-2build1_s390x.deb ... 1041s Unpacking libssm2:s390x (1.4.0-2build1) ... 1041s Selecting previously unselected package libwebpdemux2:s390x. 1041s Preparing to unpack .../188-libwebpdemux2_1.5.0-0.1_s390x.deb ... 1041s Unpacking libwebpdemux2:s390x (1.5.0-0.1) ... 1041s Selecting previously unselected package libwebpmux3:s390x. 1041s Preparing to unpack .../189-libwebpmux3_1.5.0-0.1_s390x.deb ... 1041s Unpacking libwebpmux3:s390x (1.5.0-0.1) ... 1041s Selecting previously unselected package libwxbase3.2-1t64:s390x. 1041s Preparing to unpack .../190-libwxbase3.2-1t64_3.2.6+dfsg-2ubuntu1_s390x.deb ... 1041s Unpacking libwxbase3.2-1t64:s390x (3.2.6+dfsg-2ubuntu1) ... 1041s Selecting previously unselected package libxtst6:s390x. 1041s Preparing to unpack .../191-libxtst6_2%3a1.2.5-1_s390x.deb ... 1041s Unpacking libxtst6:s390x (2:1.2.5-1) ... 1041s Selecting previously unselected package libwxgtk3.2-1t64:s390x. 1041s Preparing to unpack .../192-libwxgtk3.2-1t64_3.2.6+dfsg-2ubuntu1_s390x.deb ... 1041s Unpacking libwxgtk3.2-1t64:s390x (3.2.6+dfsg-2ubuntu1) ... 1041s Selecting previously unselected package libwxgtk-gl3.2-1t64:s390x. 1041s Preparing to unpack .../193-libwxgtk-gl3.2-1t64_3.2.6+dfsg-2ubuntu1_s390x.deb ... 1041s Unpacking libwxgtk-gl3.2-1t64:s390x (3.2.6+dfsg-2ubuntu1) ... 1041s Selecting previously unselected package libxslt1.1:s390x. 1041s Preparing to unpack .../194-libxslt1.1_1.1.39-0exp1ubuntu2_s390x.deb ... 1041s Unpacking libxslt1.1:s390x (1.1.39-0exp1ubuntu2) ... 1041s Selecting previously unselected package pymol-data. 1041s Preparing to unpack .../195-pymol-data_3.0.0+dfsg-3build2_all.deb ... 1041s Unpacking pymol-data (3.0.0+dfsg-3build2) ... 1041s Selecting previously unselected package python-matplotlib-data. 1041s Preparing to unpack .../196-python-matplotlib-data_3.8.3-7build1_all.deb ... 1041s Unpacking python-matplotlib-data (3.8.3-7build1) ... 1041s Selecting previously unselected package python3-all. 1041s Preparing to unpack .../197-python3-all_3.13.2-2_s390x.deb ... 1041s Unpacking python3-all (3.13.2-2) ... 1041s Selecting previously unselected package python3-brotli. 1041s Preparing to unpack .../198-python3-brotli_1.1.0-2build4_s390x.deb ... 1041s Unpacking python3-brotli (1.1.0-2build4) ... 1041s Selecting previously unselected package python3-legacy-cgi. 1041s Preparing to unpack .../199-python3-legacy-cgi_2.6.2-1_all.deb ... 1041s Unpacking python3-legacy-cgi (2.6.2-1) ... 1041s Selecting previously unselected package python3-pycbf. 1041s Preparing to unpack .../200-python3-pycbf_0.9.7+dfsg1-5build1_s390x.deb ... 1041s Unpacking python3-pycbf (0.9.7+dfsg1-5build1) ... 1041s Selecting previously unselected package python3-hdf5plugin. 1041s Preparing to unpack .../201-python3-hdf5plugin_5.0.0-1_all.deb ... 1041s Unpacking python3-hdf5plugin (5.0.0-1) ... 1041s Selecting previously unselected package python3-dateutil. 1041s Preparing to unpack .../202-python3-dateutil_2.9.0-3_all.deb ... 1041s Unpacking python3-dateutil (2.9.0-3) ... 1041s Selecting previously unselected package libopenjp2-7:s390x. 1041s Preparing to unpack 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Selecting previously unselected package python3-lz4. 1041s Preparing to unpack .../214-python3-lz4_4.4.0+dfsg-1build1_s390x.deb ... 1041s Unpacking python3-lz4 (4.4.0+dfsg-1build1) ... 1042s Selecting previously unselected package python3-decorator. 1042s Preparing to unpack .../215-python3-decorator_5.1.1-5_all.deb ... 1042s Unpacking python3-decorator (5.1.1-5) ... 1042s Selecting previously unselected package python3-scipy. 1042s Preparing to unpack .../216-python3-scipy_1.14.1-4ubuntu2_s390x.deb ... 1042s Unpacking python3-scipy (1.14.1-4ubuntu2) ... 1042s Selecting previously unselected package python3-mpmath. 1042s Preparing to unpack .../217-python3-mpmath_1.3.0-1_all.deb ... 1042s Unpacking python3-mpmath (1.3.0-1) ... 1042s Selecting previously unselected package python3-sympy. 1042s Preparing to unpack .../218-python3-sympy_1.13.3-5_all.deb ... 1042s Unpacking python3-sympy (1.13.3-5) ... 1042s Selecting previously unselected package python3-ufolib2. 1042s Preparing to unpack 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.../245-python3-cctbx_2024.10+ds2+~3.22.1+ds1-4build2_s390x.deb ... 1043s Unpacking python3-cctbx (2024.10+ds2+~3.22.1+ds1-4build2) ... 1044s Selecting previously unselected package python3-iniconfig. 1044s Preparing to unpack .../246-python3-iniconfig_1.1.1-2_all.deb ... 1044s Unpacking python3-iniconfig (1.1.1-2) ... 1044s Selecting previously unselected package python3-pluggy. 1044s Preparing to unpack .../247-python3-pluggy_1.5.0-1_all.deb ... 1044s Unpacking python3-pluggy (1.5.0-1) ... 1044s Selecting previously unselected package python3-pytest. 1044s Preparing to unpack .../248-python3-pytest_8.3.4-1_all.deb ... 1044s Unpacking python3-pytest (8.3.4-1) ... 1044s Selecting previously unselected package python3-dials-data. 1044s Preparing to unpack .../249-python3-dials-data_2.4.0-2_all.deb ... 1044s Unpacking python3-dials-data (2.4.0-2) ... 1044s Selecting previously unselected package python3-pytest-datadir. 1044s Preparing to unpack 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... 1044s Setting up libpciaccess0:s390x (0.17-3build1) ... 1044s Setting up libdouble-conversion3:s390x (3.3.1-1) ... 1044s Setting up fonts-lato (2.015-1) ... 1044s Setting up libxdamage1:s390x (1:1.1.6-1build1) ... 1044s Setting up libxcb-xfixes0:s390x (1.17.0-2) ... 1044s Setting up libantlr3c-3.4-0:s390x (3.4+dfsg-4build2) ... 1044s Setting up hicolor-icon-theme (0.18-2) ... 1044s Setting up libxi6:s390x (2:1.8.2-1) ... 1044s Setting up libxcb-xinput0:s390x (1.17.0-2) ... 1044s Setting up libxrender1:s390x (1:0.9.10-1.1build1) ... 1044s Setting up libdatrie1:s390x (0.2.13-3build1) ... 1044s Setting up python3-importlib-resources (6.5.2-1) ... 1045s Setting up libmmdb2-0:s390x (2.0.22-1) ... 1045s Setting up libboost-timer1.83.0:s390x (1.83.0-4.1ubuntu1) ... 1045s Setting up python3-lz4 (4.4.0+dfsg-1build1) ... 1045s Setting up libxcb-render0:s390x (1.17.0-2) ... 1045s Setting up libevent-pthreads-2.1-7t64:s390x (2.1.12-stable-10) ... 1045s Setting up libglvnd0:s390x 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1046s Setting up libblas3:s390x (3.12.1-2) ... 1046s update-alternatives: using /usr/lib/s390x-linux-gnu/blas/libblas.so.3 to provide /usr/lib/s390x-linux-gnu/libblas.so.3 (libblas.so.3-s390x-linux-gnu) in auto mode 1046s Setting up python3-packaging (24.2-1) ... 1046s Setting up libxcb-xinerama0:s390x (1.17.0-2) ... 1046s Setting up python3-flexparser (0.4-1) ... 1046s Setting up libmunge2:s390x (0.5.16-1) ... 1046s Setting up libexpat1-dev:s390x (2.6.4-1) ... 1046s Setting up libfreetype6:s390x (2.13.3+dfsg-1) ... 1046s Setting up libann-cctbx0 (1.1.2+doc-9build1) ... 1046s Setting up libepoxy0:s390x (1.5.10-2) ... 1046s Setting up libxfixes3:s390x (1:6.0.0-2build1) ... 1046s Setting up libxcb-sync1:s390x (1.17.0-2) ... 1046s Setting up python3-brotli (1.1.0-2build4) ... 1046s Setting up libavahi-common-data:s390x (0.8-16ubuntu1) ... 1046s Setting up libatspi2.0-0t64:s390x (2.55.90-1) ... 1046s Setting up liblzf1:s390x (3.6-4) ... 1046s Setting up python3-cycler (0.12.1-1) ... 1046s 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libjpeg8:s390x (8c-2ubuntu11) ... 1047s Setting up libfabric1:s390x (1.17.0-3.1) ... 1047s Setting up python3-sympy (1.13.3-5) ... 1051s Setting up libice6:s390x (2:1.1.1-1) ... 1051s Setting up mesa-libgallium:s390x (25.0.1-2ubuntu1) ... 1051s Setting up liblapack3:s390x (3.12.1-2) ... 1051s update-alternatives: using /usr/lib/s390x-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/s390x-linux-gnu/liblapack.so.3 (liblapack.so.3-s390x-linux-gnu) in auto mode 1051s Setting up libqt5dbus5t64:s390x (5.15.15+dfsg-4ubuntu1) ... 1051s Setting up libssm2:s390x (1.4.0-2build1) ... 1051s Setting up libatk1.0-0t64:s390x (2.55.90-1) ... 1051s Setting up libgbm1:s390x (25.0.1-2ubuntu1) ... 1051s Setting up libwacom9:s390x (2.14.0-1) ... 1051s Setting up fontconfig-config (2.15.0-2ubuntu1) ... 1051s Setting up python3-pytest (8.3.4-1) ... 1051s Setting up libxtst6:s390x (2:1.2.5-1) ... 1051s Setting up libwebpdemux2:s390x (1.5.0-0.1) ... 1051s Setting up python3-pytest-datadir (1.4.1+ds-1) ... 1051s Setting up libxcursor1:s390x (1:1.2.3-1) ... 1051s Setting up libgl1-mesa-dri:s390x (25.0.1-2ubuntu1) ... 1051s Setting up libqt5network5t64:s390x (5.15.15+dfsg-4ubuntu1) ... 1051s Setting up libavahi-common3:s390x (0.8-16ubuntu1) ... 1051s Setting up libqt5xml5t64:s390x (5.15.15+dfsg-4ubuntu1) ... 1051s Setting up dconf-service (0.40.0-5) ... 1051s Setting up libqt5test5t64:s390x (5.15.15+dfsg-4ubuntu1) ... 1051s Setting up libhwloc-plugins:s390x (2.12.0-1) ... 1051s Setting up libccp4f0t64:s390x (8.0.0-4) ... 1051s Setting up libinput-bin (1.27.1-1) ... 1051s Setting up python3-pint (0.24.4-1) ... 1052s Setting up libthai0:s390x (0.1.29-2build1) ... 1052s Setting up libegl-mesa0:s390x (25.0.1-2ubuntu1) ... 1052s Setting up libjs-jquery-ui (1.13.2+dfsg-1) ... 1052s Setting up libraqm0:s390x (0.10.2-1) ... 1052s Setting up libpython3.13-dev:s390x (3.13.2-1) ... 1052s Setting up libpmix2t64:s390x (5.0.6-5) ... 1052s Setting up python3-numpy (1:2.2.3+ds-4) ... 1053s Setting up libjs-sphinxdoc (8.1.3-4) ... 1053s Setting up libhdf5-310:s390x (1.14.5+repack-3) ... 1053s Setting up python3-pytest-mock (3.14.0-2) ... 1053s Setting up python3-lxml:s390x (5.3.1-1build1) ... 1053s Setting up libtiff6:s390x (4.5.1+git230720-4ubuntu4) ... 1053s Setting up libwayland-cursor0:s390x (1.23.1-3) ... 1053s Setting up libegl1:s390x (1.7.0-1build1) ... 1053s Setting up libgdk-pixbuf-2.0-0:s390x (2.42.12+dfsg-2) ... 1053s Setting up python3-contourpy (1.3.1-1build1) ... 1053s Setting up libfontconfig1:s390x (2.15.0-2ubuntu1) ... 1053s Setting up libgcc-14-dev:s390x (14.2.0-17ubuntu3) ... 1053s Setting up python3-dials-data (2.4.0-2) ... 1053s Setting up libstdc++-14-dev:s390x (14.2.0-17ubuntu3) ... 1053s Setting up libsm6:s390x (2:1.2.4-1) ... 1053s Setting up libavahi-client3:s390x (0.8-16ubuntu1) ... 1053s Setting up liblbfgsb0:s390x (3.0+dfsg.4-1build1) ... 1053s Setting up python3-mrcfile (1.5.4-2) ... 1053s Setting up libatk-bridge2.0-0t64:s390x (2.55.90-1) ... 1053s Setting up libinput10:s390x (1.27.1-1) ... 1053s Setting up gtk-update-icon-cache (4.17.5+ds-3ubuntu1) ... 1053s Setting up libopenmpi40:s390x (5.0.7-1) ... 1053s Setting up libhdf5-hl-310:s390x (1.14.5+repack-3) ... 1053s Setting up fontconfig (2.15.0-2ubuntu1) ... 1055s Regenerating fonts cache... done. 1055s Setting up libxft2:s390x (2.3.6-1build1) ... 1055s Setting up libboost1.83-dev:s390x (1.83.0-4.1ubuntu1) ... 1055s Setting up libglx-mesa0:s390x (25.0.1-2ubuntu1) ... 1055s Setting up python3-scipy (1.14.1-4ubuntu2) ... 1058s Setting up libpython3-dev:s390x (3.13.2-2) ... 1058s Setting up libcbf1t64:s390x (0.9.7+dfsg1-5build1) ... 1058s Setting up libglx0:s390x (1.7.0-1build1) ... 1058s Setting up dconf-gsettings-backend:s390x (0.40.0-5) ... 1058s Setting up libccp4-dev:s390x (8.0.0-4) ... 1058s Setting up python3.13-dev (3.13.2-1) ... 1058s Setting up libtk8.6:s390x (8.6.16-1) ... 1058s Setting up libpango-1.0-0:s390x (1.56.1-1) ... 1058s Setting up python3.12-tk (3.12.9-1) ... 1058s Setting up libnetcdf22:s390x (1:4.9.3-1) ... 1058s Setting up python3-h5py-serial (3.13.0-1) ... 1058s Setting up libhdf5-openmpi-310:s390x (1.14.5+repack-3) ... 1058s Setting up libcairo2:s390x (1.18.2-2) ... 1058s Setting up python3.13-tk (3.13.2-1) ... 1058s Setting up python3-pil:s390x (11.1.0-5build1) ... 1058s Setting up libgl1:s390x (1.7.0-1build1) ... 1058s Setting up python3-pytest-regressions (2.5.0+ds-2) ... 1058s Setting up adwaita-icon-theme (48~beta-3) ... 1058s update-alternatives: using /usr/share/icons/Adwaita/cursor.theme to provide /usr/share/icons/default/index.theme (x-cursor-theme) in auto mode 1058s Setting up libnotify4:s390x (0.8.4-1) ... 1058s Setting up python3-dev (3.13.2-2) ... 1058s Setting up libboost-python1.83-dev (1.83.0-4.1ubuntu1) ... 1058s Setting up python3-pycbf (0.9.7+dfsg1-5build1) ... 1058s Setting up python3-h5py (3.13.0-1) ... 1058s Setting up libglew2.2:s390x (2.2.0-4build1) ... 1058s Setting up python3-hdf5plugin (5.0.0-1) ... 1058s Setting up libcairo-gobject2:s390x (1.18.2-2) ... 1058s Setting up libpangoft2-1.0-0:s390x (1.56.1-1) ... 1058s Setting up python3-nxmx (0.0.4-1) ... 1058s Setting up libcups2t64:s390x (2.4.11-0ubuntu2) ... 1058s Setting up libgtk-3-common (3.24.48-3ubuntu1) ... 1058s Setting up libpangocairo-1.0-0:s390x (1.56.1-1) ... 1058s Setting up libcctbx0 (2024.10+ds2+~3.22.1+ds1-4build2) ... 1058s Setting up tk8.6-blt2.5 (2.5.3+dfsg-8) ... 1058s Setting up bitshuffle (0.5.2-1build2) ... 1058s Setting up blt (2.5.3+dfsg-8) ... 1058s Setting up python3-tk:s390x (3.13.1-1) ... 1058s Setting up python3-opengl (3.1.7+dfsg-1) ... 1059s /usr/lib/python3/dist-packages/OpenGL/GL/AMD/vertex_shader_tessellator.py:1: SyntaxWarning: invalid escape sequence '\ ' 1059s '''OpenGL extension AMD.vertex_shader_tessellator 1059s Setting up libboost-python-dev (1.83.0.2ubuntu1) ... 1059s Setting up libqt5gui5t64:s390x (5.15.15+dfsg-4ubuntu1) ... 1060s Setting up python3-pil.imagetk:s390x (11.1.0-5build1) ... 1060s Setting up libcctbx-dev (2024.10+ds2+~3.22.1+ds1-4build2) ... 1060s Setting up libqt5widgets5t64:s390x (5.15.15+dfsg-4ubuntu1) ... 1060s Setting up libqt5help5:s390x (5.15.15-6build1) ... 1060s Setting up libqt5opengl5t64:s390x (5.15.15+dfsg-4ubuntu1) ... 1060s Setting up libqt5printsupport5t64:s390x (5.15.15+dfsg-4ubuntu1) ... 1060s Setting up libqt5designer5:s390x (5.15.15-6build1) ... 1060s Setting up python3-pyqt5 (5.15.11+dfsg-2) ... 1060s Setting up python3-pyqt5.qtopengl (5.15.11+dfsg-2) ... 1060s Setting up python3-pymol (3.0.0+dfsg-3build2) ... 1060s Setting up python3-fonttools (4.55.3-2build1) ... 1061s Setting up python3-ufolib2 (0.17.0+dfsg1-1) ... 1061s Setting up python3-matplotlib (3.8.3-7build1) ... 1062s Processing triggers for libc-bin (2.41-1ubuntu1) ... 1062s Processing triggers for man-db (2.13.0-1) ... 1063s Processing triggers for libglib2.0-0t64:s390x (2.84.0-1) ... 1063s Setting up libgtk-3-0t64:s390x (3.24.48-3ubuntu1) ... 1063s Processing triggers for udev (257.3-1ubuntu3) ... 1063s Setting up libwxgtk3.2-1t64:s390x (3.2.6+dfsg-2ubuntu1) ... 1063s Setting up libwxgtk-gl3.2-1t64:s390x (3.2.6+dfsg-2ubuntu1) ... 1063s Setting up python3-wxgtk4.0 (4.2.2+dfsg-3build1) ... 1064s Setting up python3-cctbx (2024.10+ds2+~3.22.1+ds1-4build2) ... 1066s /usr/lib/python3/dist-packages/iotbx/pdb/utils.py:8: SyntaxWarning: invalid escape sequence '\{' 1066s """ Iterator to generate strings of length n_chars, using upper-case, 1066s /usr/lib/python3/dist-packages/iotbx/pdb/utils.py:46: SyntaxWarning: invalid escape sequence '\/' 1066s special_characters = """[]_,.;:"&<>()\/\{}'`~!@#$%*|+-""" 1074s /usr/lib/python3/dist-packages/xfel/merging/application/errors/error_modifier_mm24.py:724: SyntaxWarning: invalid escape sequence '\o' 1074s width=pairwise_differences_db, label='$\omega_{hkl}$' 1074s /usr/lib/python3/dist-packages/xfel/merging/application/errors/error_modifier_mm24.py:739: SyntaxWarning: invalid escape sequence '\o' 1074s axes[0].set_ylabel('Distribution of $\omega_{hbk}$') 1074s /usr/lib/python3/dist-packages/xfel/merging/application/errors/error_modifier_mm24.py:740: SyntaxWarning: invalid escape sequence '\o' 1074s axes[0].set_xlabel('Normalized PD ($\omega_{hbk}$)') 1074s /usr/lib/python3/dist-packages/xfel/merging/application/errors/error_modifier_mm24.py:759: SyntaxWarning: invalid escape sequence '\o' 1074s axes[1].set_xlabel('Sorted Normalized PD ($\omega_{hbk}$)') 1074s /usr/lib/python3/dist-packages/xfel/merging/application/errors/error_modifier_mm24.py:778: SyntaxWarning: invalid escape sequence '\s' 1074s axes[2].set_ylabel('Standard Deviation of $I_{hbk}/\sigma_{hbk}$') 1074s /usr/lib/python3/dist-packages/xfel/merging/application/errors/error_modifier_mm24.py:807: SyntaxWarning: invalid escape sequence '\m' 1074s axes_sadd.set_ylabel('$s_{\mathrm{fac}}^2 \\times s_{\mathrm{add}}^2$') 1074s Processing triggers for libc-bin (2.41-1ubuntu1) ... 1091s autopkgtest [12:43:57]: test dxtbx: [----------------------- 1091s Testing dxtbx with python3.13: 1093s Fatal Python error: Segmentation fault 1093s 1093s Current thread 0x000003ff9e8f8120 (most recent call first): 1093s File "/usr/lib/python3/dist-packages/cctbx/sgtbx/__init__.py", line 102 in __init__ 1093s File "/usr/lib/python3/dist-packages/cctbx/crystal/__init__.py", line 75 in __init__ 1093s File "/tmp/autopkgtest.iHWuYU/autopkgtest_tmp/tests/test_crystal_model_equivalence.py", line 28 in 1093s File "/usr/lib/python3/dist-packages/_pytest/assertion/rewrite.py", line 184 in exec_module 1093s File "", line 935 in _load_unlocked 1093s File "", line 1331 in _find_and_load_unlocked 1093s File "", line 1360 in _find_and_load 1093s File "", line 1387 in _gcd_import 1093s File "/usr/lib/python3.13/importlib/__init__.py", line 88 in import_module 1093s File "/usr/lib/python3/dist-packages/_pytest/pathlib.py", line 587 in import_path 1093s File "/usr/lib/python3/dist-packages/_pytest/python.py", line 493 in importtestmodule 1093s File "/usr/lib/python3/dist-packages/_pytest/python.py", line 546 in _getobj 1093s File "/usr/lib/python3/dist-packages/_pytest/python.py", line 284 in obj 1093s File "/usr/lib/python3/dist-packages/_pytest/python.py", line 562 in _register_setup_module_fixture 1093s File "/usr/lib/python3/dist-packages/_pytest/python.py", line 549 in collect 1093s File "/usr/lib/python3/dist-packages/_pytest/runner.py", line 389 in collect 1093s File "/usr/lib/python3/dist-packages/_pytest/runner.py", line 341 in from_call 1093s File "/usr/lib/python3/dist-packages/_pytest/runner.py", line 391 in pytest_make_collect_report 1093s File "/usr/lib/python3/dist-packages/pluggy/_callers.py", line 103 in _multicall 1093s File "/usr/lib/python3/dist-packages/pluggy/_manager.py", line 120 in _hookexec 1093s File "/usr/lib/python3/dist-packages/pluggy/_hooks.py", line 513 in __call__ 1093s File "/usr/lib/python3/dist-packages/_pytest/runner.py", line 567 in collect_one_node 1093s File "/usr/lib/python3/dist-packages/_pytest/main.py", line 835 in _collect_one_node 1093s File "/usr/lib/python3/dist-packages/_pytest/main.py", line 970 in genitems 1093s File "/usr/lib/python3/dist-packages/_pytest/main.py", line 975 in genitems 1093s File "/usr/lib/python3/dist-packages/_pytest/main.py", line 975 in genitems 1093s File "/usr/lib/python3/dist-packages/_pytest/main.py", line 809 in perform_collect 1093s File "/usr/lib/python3/dist-packages/_pytest/main.py", line 347 in pytest_collection 1093s File "/usr/lib/python3/dist-packages/pluggy/_callers.py", line 103 in _multicall 1093s File "/usr/lib/python3/dist-packages/pluggy/_manager.py", line 120 in _hookexec 1093s File "/usr/lib/python3/dist-packages/pluggy/_hooks.py", line 513 in __call__ 1093s File "/usr/lib/python3/dist-packages/_pytest/main.py", line 336 in _main 1093s File "/usr/lib/python3/dist-packages/_pytest/main.py", line 283 in wrap_session 1093s File "/usr/lib/python3/dist-packages/_pytest/main.py", line 330 in pytest_cmdline_main 1093s File "/usr/lib/python3/dist-packages/pluggy/_callers.py", line 103 in _multicall 1093s File "/usr/lib/python3/dist-packages/pluggy/_manager.py", line 120 in _hookexec 1093s File "/usr/lib/python3/dist-packages/pluggy/_hooks.py", line 513 in __call__ 1093s File "/usr/lib/python3/dist-packages/_pytest/config/__init__.py", line 175 in main 1093s File "/usr/lib/python3/dist-packages/_pytest/config/__init__.py", line 201 in console_main 1093s File "/usr/lib/python3/dist-packages/pytest/__main__.py", line 9 in 1093s File "", line 88 in _run_code 1093s File "", line 198 in _run_module_as_main 1093s 1093s Extension modules: _brotli, yaml._yaml, h5py._debian_h5py_serial._errors, h5py._debian_h5py_serial.defs, h5py._debian_h5py_serial._objects, h5py._debian_h5py_serial.h5, numpy._core._multiarray_umath, numpy.linalg._umath_linalg, h5py._debian_h5py_serial.utils, h5py._debian_h5py_serial.h5t, h5py._debian_h5py_serial.h5s, h5py._debian_h5py_serial.h5ac, h5py._debian_h5py_serial.h5p, h5py._debian_h5py_serial.h5r, h5py._debian_h5py_serial._proxy, h5py._debian_h5py_serial._conv, h5py._debian_h5py_serial.h5z, h5py._debian_h5py_serial.h5a, h5py._debian_h5py_serial.h5d, h5py._debian_h5py_serial.h5ds, h5py._debian_h5py_serial.h5g, h5py._debian_h5py_serial.h5i, h5py._debian_h5py_serial.h5o, h5py._debian_h5py_serial.h5f, h5py._debian_h5py_serial.h5fd, h5py._debian_h5py_serial.h5pl, h5py._debian_h5py_serial.h5l, h5py._debian_h5py_serial._selector, h5py.atexit, h5py._errors, h5py.defs, h5py._objects, h5py.h5, h5py.utils, h5py.h5t, h5py.h5s, h5py.h5ac, h5py.h5p, h5py.h5r, h5py._proxy, h5py._conv, h5py.h5z, h5py.h5a, h5py.h5d, h5py.h5ds, h5py.h5g, h5py.h5i, h5py.h5o, h5py.h5f, h5py.h5fd, h5py.h5pl, h5py.h5l, h5py._selector, scipy._lib._ccallback_c, numpy.random._common, numpy.random.bit_generator, numpy.random._bounded_integers, numpy.random._mt19937, numpy.random.mtrand, numpy.random._philox, numpy.random._pcg64, numpy.random._sfc64, numpy.random._generator, scipy.sparse._sparsetools, _csparsetools, scipy.sparse._csparsetools, scipy.linalg._fblas, scipy.linalg._flapack, scipy.linalg.cython_lapack, scipy.linalg._cythonized_array_utils, scipy.linalg._solve_toeplitz, scipy.linalg._decomp_lu_cython, scipy.linalg._matfuncs_sqrtm_triu, scipy.linalg.cython_blas, scipy.linalg._matfuncs_expm, scipy.linalg._decomp_update, scipy.sparse.linalg._dsolve._superlu, scipy.sparse.linalg._eigen.arpack._arpack, scipy.sparse.linalg._propack._spropack, scipy.sparse.linalg._propack._dpropack, scipy.sparse.linalg._propack._cpropack, scipy.sparse.linalg._propack._zpropack, scipy.sparse.csgraph._tools, scipy.sparse.csgraph._shortest_path, scipy.sparse.csgraph._traversal, scipy.sparse.csgraph._min_spanning_tree, scipy.sparse.csgraph._flow, scipy.sparse.csgraph._matching, scipy.sparse.csgraph._reordering, scipy.spatial._ckdtree, scipy._lib.messagestream, scipy.spatial._qhull, scipy.spatial._voronoi, scipy.spatial._distance_wrap, scipy.spatial._hausdorff, scipy.special._ufuncs_cxx, scipy.special._ufuncs, scipy.special._specfun, scipy.special._comb, scipy.special._ellip_harm_2, scipy.spatial.transform._rotation, boost_python_meta_ext, boost_optional_ext, std_pair_ext, scitbx_array_family_flex_ext, scitbx_stl_set_ext, scitbx_stl_vector_ext, scitbx_stl_map_ext, scitbx_random_ext, cctbx_array_family_flex_ext, cctbx_crystal_ext, scitbx_array_family_shared_ext, cctbx_uctbx_ext, cctbx_sgtbx_ext, boost_rational_ext, cctbx_covariance_ext, cctbx_geometry_ext, scitbx_cubicle_neighbors_ext, dxtbx_format_image_ext, dxtbx_imageset_ext, dxtbx_ext, _pycbf, dxtbx_model_ext, cctbx_eltbx_attenuation_coefficient_ext, iotbx_detectors_ext, iotbx_detectors_bruker_ext, omptbx_ext, dxtbx_masking_ext, dxtbx_format_nexus_ext, scitbx_math_ext, scitbx_linalg_ext, cctbx_orientation_ext, scipy.interpolate._fitpack, scipy.interpolate._dfitpack, scipy.optimize._group_columns, scipy.optimize._trlib._trlib, scipy.optimize._lbfgsb, _moduleTNC, scipy.optimize._moduleTNC, scipy.optimize._cobyla, scipy.optimize._slsqp, scipy.optimize._minpack, scipy.optimize._lsq.givens_elimination, scipy.optimize._zeros, scipy.optimize._highs.cython.src._highs_wrapper, scipy.optimize._highs._highs_wrapper, scipy.optimize._highs.cython.src._highs_constants, scipy.optimize._highs._highs_constants, scipy.linalg._interpolative, scipy.optimize._bglu_dense, scipy.optimize._lsap, scipy.optimize._direct, scipy.interpolate._bspl, scipy.interpolate._ppoly, scipy.interpolate.interpnd, scipy.interpolate._rbfinterp_pythran, scipy.interpolate._rgi_cython, iotbx_cif_ext, cctbx_miller_ext, cctbx_asymmetric_map_ext, cctbx_maptbx_ext, cctbx_adptbx_ext, scitbx_fftpack_ext, cctbx_xray_ext, cctbx_eltbx_xray_scattering_ext, cctbx_math_ext, cctbx_eltbx_neutron_ext, scitbx_lbfgs_ext (total: 168) 1097s Segmentation fault (core dumped) 1098s autopkgtest [12:44:04]: test dxtbx: -----------------------] 1098s autopkgtest [12:44:04]: test dxtbx: - - - - - - - - - - results - - - - - - - - - - 1098s dxtbx FAIL non-zero exit status 139 1098s autopkgtest [12:44:04]: @@@@@@@@@@@@@@@@@@@@ summary 1098s cctbx FAIL non-zero exit status 1 1098s dxtbx FAIL non-zero exit status 139 1116s nova [W] Using flock in prodstack6-s390x 1116s Creating nova instance adt-plucky-s390x-cctbx-20250313-104327-juju-7f2275-prod-proposed-migration-environment-20-664f4011-9de0-43bc-8e50-5bb7c9458efd from image adt/ubuntu-plucky-s390x-server-20250313.img (UUID 54e7e81b-c545-49a7-82a9-0db67474751a)... 1116s nova [W] Timed out waiting for 37fa3060-c3bd-4efc-b978-1344cd3edd82 to get deleted. 1116s nova [W] Using flock in prodstack6-s390x 1116s Creating nova instance adt-plucky-s390x-cctbx-20250313-104327-juju-7f2275-prod-proposed-migration-environment-20-664f4011-9de0-43bc-8e50-5bb7c9458efd from image adt/ubuntu-plucky-s390x-server-20250313.img (UUID 54e7e81b-c545-49a7-82a9-0db67474751a)... 1116s nova [W] Timed out waiting for 886fbee1-cdb7-4878-971c-3ef4c3e6c66a to get deleted.