0s autopkgtest [23:15:11]: starting date and time: 2024-11-01 23:15:11+0000
  0s autopkgtest [23:15:11]: git checkout: 6f3be7a8 Fix armhf LXD image generation for plucky
  0s autopkgtest [23:15:11]: host juju-7f2275-prod-proposed-migration-environment-15; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.r0m6ejk3/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:htslib --apt-upgrade trinityrnaseq --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=htslib/1.20+ds-2 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest-ppc64el --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-15@bos03-ppc64el-28.secgroup --name adt-plucky-ppc64el-trinityrnaseq-20241101-231511-juju-7f2275-prod-proposed-migration-environment-15-6bbdf971-a4c4-470e-ac16-601dd3018c70 --image adt/ubuntu-plucky-ppc64el-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-15 --net-id=net_prod-proposed-migration-ppc64el -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,keyserver.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/
132s autopkgtest [23:17:23]: testbed dpkg architecture: ppc64el
132s autopkgtest [23:17:23]: testbed apt version: 2.9.8
132s autopkgtest [23:17:23]: @@@@@@@@@@@@@@@@@@@@ test bed setup
133s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease [73.9 kB]
133s Get:2 http://ftpmaster.internal/ubuntu plucky-proposed/restricted Sources [7016 B]
134s Get:3 http://ftpmaster.internal/ubuntu plucky-proposed/main Sources [176 kB]
134s Get:4 http://ftpmaster.internal/ubuntu plucky-proposed/universe Sources [2639 kB]
137s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse Sources [41.0 kB]
137s Get:6 http://ftpmaster.internal/ubuntu plucky-proposed/main ppc64el Packages [211 kB]
138s Get:7 http://ftpmaster.internal/ubuntu plucky-proposed/universe ppc64el Packages [1767 kB]
140s Get:8 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse ppc64el Packages [22.3 kB]
141s Fetched 4937 kB in 8s (647 kB/s)
141s Reading package lists...
144s Reading package lists...
144s Building dependency tree...
144s Reading state information...
144s Calculating upgrade...
145s The following packages will be upgraded:
145s   libblockdev-crypto3 libblockdev-fs3 libblockdev-loop3 libblockdev-mdraid3
145s   libblockdev-nvme3 libblockdev-part3 libblockdev-swap3 libblockdev-utils3
145s   libblockdev3 libevdev2 libftdi1-2 libinih1 libpipeline1 nano
145s   python3-lazr.uri
145s 15 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
145s Need to get 664 kB of archives.
145s After this operation, 151 kB of additional disk space will be used.
145s Get:1 http://ftpmaster.internal/ubuntu plucky/main ppc64el libevdev2 ppc64el 1.13.3+dfsg-1 [39.2 kB]
145s Get:2 http://ftpmaster.internal/ubuntu plucky/main ppc64el libpipeline1 ppc64el 1.5.8-1 [34.4 kB]
145s Get:3 http://ftpmaster.internal/ubuntu plucky/main ppc64el nano ppc64el 8.2-1 [329 kB]
146s Get:4 http://ftpmaster.internal/ubuntu plucky/main ppc64el libblockdev-utils3 ppc64el 3.2.0-2 [20.6 kB]
146s Get:5 http://ftpmaster.internal/ubuntu plucky/main ppc64el libblockdev-crypto3 ppc64el 3.2.0-2 [24.8 kB]
146s Get:6 http://ftpmaster.internal/ubuntu plucky/main ppc64el libblockdev-fs3 ppc64el 3.2.0-2 [40.6 kB]
146s Get:7 http://ftpmaster.internal/ubuntu plucky/main ppc64el libblockdev-loop3 ppc64el 3.2.0-2 [7712 B]
146s Get:8 http://ftpmaster.internal/ubuntu plucky/main ppc64el libblockdev-mdraid3 ppc64el 3.2.0-2 [14.2 kB]
146s Get:9 http://ftpmaster.internal/ubuntu plucky/main ppc64el libblockdev-nvme3 ppc64el 3.2.0-2 [20.2 kB]
146s Get:10 http://ftpmaster.internal/ubuntu plucky/main ppc64el libblockdev-part3 ppc64el 3.2.0-2 [17.5 kB]
146s Get:11 http://ftpmaster.internal/ubuntu plucky/main ppc64el libblockdev-swap3 ppc64el 3.2.0-2 [8540 B]
146s Get:12 http://ftpmaster.internal/ubuntu plucky/main ppc64el libblockdev3 ppc64el 3.2.0-2 [54.1 kB]
146s Get:13 http://ftpmaster.internal/ubuntu plucky/main ppc64el libftdi1-2 ppc64el 1.5-7 [32.1 kB]
146s Get:14 http://ftpmaster.internal/ubuntu plucky/main ppc64el libinih1 ppc64el 58-1ubuntu1 [7816 B]
146s Get:15 http://ftpmaster.internal/ubuntu plucky/main ppc64el python3-lazr.uri all 1.0.6-4 [13.6 kB]
146s Fetched 664 kB in 1s (581 kB/s)
147s (Reading database ... 
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(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 73549 files and directories currently installed.)
147s Preparing to unpack .../00-libevdev2_1.13.3+dfsg-1_ppc64el.deb ...
147s Unpacking libevdev2:ppc64el (1.13.3+dfsg-1) over (1.13.2+dfsg-1) ...
147s Preparing to unpack .../01-libpipeline1_1.5.8-1_ppc64el.deb ...
147s Unpacking libpipeline1:ppc64el (1.5.8-1) over (1.5.7-2) ...
147s Preparing to unpack .../02-nano_8.2-1_ppc64el.deb ...
147s Unpacking nano (8.2-1) over (8.1-1) ...
147s Preparing to unpack .../03-libblockdev-utils3_3.2.0-2_ppc64el.deb ...
147s Unpacking libblockdev-utils3:ppc64el (3.2.0-2) over (3.1.1-2) ...
147s Preparing to unpack .../04-libblockdev-crypto3_3.2.0-2_ppc64el.deb ...
147s Unpacking libblockdev-crypto3:ppc64el (3.2.0-2) over (3.1.1-2) ...
147s Preparing to unpack .../05-libblockdev-fs3_3.2.0-2_ppc64el.deb ...
147s Unpacking libblockdev-fs3:ppc64el (3.2.0-2) over (3.1.1-2) ...
147s Preparing to unpack .../06-libblockdev-loop3_3.2.0-2_ppc64el.deb ...
147s Unpacking libblockdev-loop3:ppc64el (3.2.0-2) over (3.1.1-2) ...
147s Preparing to unpack .../07-libblockdev-mdraid3_3.2.0-2_ppc64el.deb ...
147s Unpacking libblockdev-mdraid3:ppc64el (3.2.0-2) over (3.1.1-2) ...
147s Preparing to unpack .../08-libblockdev-nvme3_3.2.0-2_ppc64el.deb ...
147s Unpacking libblockdev-nvme3:ppc64el (3.2.0-2) over (3.1.1-2) ...
147s Preparing to unpack .../09-libblockdev-part3_3.2.0-2_ppc64el.deb ...
147s Unpacking libblockdev-part3:ppc64el (3.2.0-2) over (3.1.1-2) ...
147s Preparing to unpack .../10-libblockdev-swap3_3.2.0-2_ppc64el.deb ...
147s Unpacking libblockdev-swap3:ppc64el (3.2.0-2) over (3.1.1-2) ...
147s Preparing to unpack .../11-libblockdev3_3.2.0-2_ppc64el.deb ...
147s Unpacking libblockdev3:ppc64el (3.2.0-2) over (3.1.1-2) ...
147s Preparing to unpack .../12-libftdi1-2_1.5-7_ppc64el.deb ...
147s Unpacking libftdi1-2:ppc64el (1.5-7) over (1.5-6build5) ...
147s Preparing to unpack .../13-libinih1_58-1ubuntu1_ppc64el.deb ...
147s Unpacking libinih1:ppc64el (58-1ubuntu1) over (55-1ubuntu2) ...
148s Preparing to unpack .../14-python3-lazr.uri_1.0.6-4_all.deb ...
148s Unpacking python3-lazr.uri (1.0.6-4) over (1.0.6-3) ...
148s Setting up libpipeline1:ppc64el (1.5.8-1) ...
148s Setting up libinih1:ppc64el (58-1ubuntu1) ...
148s Setting up python3-lazr.uri (1.0.6-4) ...
148s Setting up libftdi1-2:ppc64el (1.5-7) ...
148s Setting up libblockdev-utils3:ppc64el (3.2.0-2) ...
148s Setting up libblockdev-nvme3:ppc64el (3.2.0-2) ...
148s Setting up nano (8.2-1) ...
148s Setting up libblockdev-fs3:ppc64el (3.2.0-2) ...
148s Setting up libevdev2:ppc64el (1.13.3+dfsg-1) ...
148s Setting up libblockdev-mdraid3:ppc64el (3.2.0-2) ...
148s Setting up libblockdev-crypto3:ppc64el (3.2.0-2) ...
148s Setting up libblockdev-swap3:ppc64el (3.2.0-2) ...
148s Setting up libblockdev-loop3:ppc64el (3.2.0-2) ...
148s Setting up libblockdev3:ppc64el (3.2.0-2) ...
148s Installing new version of config file /etc/libblockdev/3/conf.d/00-default.cfg ...
148s Setting up libblockdev-part3:ppc64el (3.2.0-2) ...
148s Processing triggers for libc-bin (2.40-1ubuntu3) ...
148s Processing triggers for man-db (2.12.1-3) ...
150s Processing triggers for install-info (7.1.1-1) ...
150s Reading package lists...
151s Building dependency tree...
151s Reading state information...
151s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
152s Hit:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease
152s Hit:2 http://ftpmaster.internal/ubuntu plucky InRelease
152s Hit:3 http://ftpmaster.internal/ubuntu plucky-updates InRelease
152s Hit:4 http://ftpmaster.internal/ubuntu plucky-security InRelease
153s Reading package lists...
154s Reading package lists...
154s Building dependency tree...
154s Reading state information...
154s Calculating upgrade...
154s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
154s Reading package lists...
155s Building dependency tree...
155s Reading state information...
155s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
158s autopkgtest [23:17:49]: testbed running kernel: Linux 6.11.0-8-generic #8-Ubuntu SMP Mon Sep 16 13:49:23 UTC 2024
158s autopkgtest [23:17:49]: @@@@@@@@@@@@@@@@@@@@ apt-source trinityrnaseq
305s Get:1 http://ftpmaster.internal/ubuntu plucky/universe trinityrnaseq 2.15.1+dfsg-5build1 (dsc) [2629 B]
305s Get:2 http://ftpmaster.internal/ubuntu plucky/universe trinityrnaseq 2.15.1+dfsg-5build1 (tar) [307 MB]
305s Get:3 http://ftpmaster.internal/ubuntu plucky/universe trinityrnaseq 2.15.1+dfsg-5build1 (diff) [39.4 kB]
305s gpgv: Signature made Sun Apr 14 18:57:26 2024 UTC
305s gpgv:                using RSA key AC0A4FF12611B6FCCF01C111393587D97D86500B
305s gpgv: Can't check signature: No public key
305s dpkg-source: warning: cannot verify inline signature for ./trinityrnaseq_2.15.1+dfsg-5build1.dsc: no acceptable signature found
319s autopkgtest [23:20:30]: testing package trinityrnaseq version 2.15.1+dfsg-5build1
319s autopkgtest [23:20:30]: build not needed
337s autopkgtest [23:20:48]: test run-tests: preparing testbed
338s Reading package lists...
338s Building dependency tree...
338s Reading state information...
339s Starting pkgProblemResolver with broken count: 1
339s Starting 2 pkgProblemResolver with broken count: 1
339s Investigating (0) autopkgtest-satdep:ppc64el < none -> 0 @un puN Ib >
339s Broken autopkgtest-satdep:ppc64el Depends on trinityrnaseq:ppc64el < none | 2.15.1+dfsg-5build1 @un uH >
339s   Considering trinityrnaseq:ppc64el 1 as a solution to autopkgtest-satdep:ppc64el 9998
339s   Re-Instated libgomp1:ppc64el
339s   Re-Instated libdeflate0:ppc64el
339s   Re-Instated libhtscodecs2:ppc64el
339s   Re-Instated libhts3t64:ppc64el
339s   Re-Instated ca-certificates-java:ppc64el
339s   Re-Instated java-common:ppc64el
339s   Re-Instated liblcms2-2:ppc64el
339s   Re-Instated libjpeg-turbo8:ppc64el
339s   Re-Instated libjpeg8:ppc64el
339s   Re-Instated libpcsclite1:ppc64el
339s   Re-Instated openjdk-21-jre-headless:ppc64el
339s   Re-Instated default-jre-headless:ppc64el
339s   Re-Instated jaligner:ppc64el
339s   Re-Instated libgetopt-java:ppc64el
339s   Re-Instated libatinject-jsr330-api-java:ppc64el
339s   Re-Instated liberror-prone-java:ppc64el
339s   Re-Instated libjsr305-java:ppc64el
339s   Re-Instated libguava-java:ppc64el
339s   Re-Instated libjung-free-java:ppc64el
339s   Re-Instated bowtie:ppc64el
339s   Re-Instated bowtie2:ppc64el
339s   Re-Instated libencode-locale-perl:ppc64el
339s   Re-Instated libtimedate-perl:ppc64el
339s   Re-Instated libhttp-date-perl:ppc64el
339s   Re-Instated libfile-listing-perl:ppc64el
339s   Re-Instated libhtml-tagset-perl:ppc64el
339s   Re-Instated liburi-perl:ppc64el
339s   Re-Instated libhtml-parser-perl:ppc64el
339s   Re-Instated libhtml-tree-perl:ppc64el
339s   Re-Instated libclone-perl:ppc64el
339s   Re-Instated libio-html-perl:ppc64el
339s   Re-Instated liblwp-mediatypes-perl:ppc64el
339s   Re-Instated libhttp-message-perl:ppc64el
339s   Re-Instated libhttp-cookies-perl:ppc64el
339s   Re-Instated libhttp-negotiate-perl:ppc64el
339s   Re-Instated perl-openssl-defaults:ppc64el
339s   Re-Instated libnet-ssleay-perl:ppc64el
339s   Re-Instated libio-socket-ssl-perl:ppc64el
339s   Re-Instated libnet-http-perl:ppc64el
339s   Re-Instated liblwp-protocol-https-perl:ppc64el
339s   Re-Instated libtry-tiny-perl:ppc64el
339s   Re-Instated libwww-robotrules-perl:ppc64el
339s   Re-Instated libwww-perl:ppc64el
339s   Re-Instated samtools:ppc64el
339s   Re-Instated libjellyfish-2.0-2:ppc64el
339s   Re-Instated jellyfish:ppc64el
339s   Re-Instated zip:ppc64el
339s   Re-Instated unzip:ppc64el
339s   Re-Instated libpaper1:ppc64el
339s   Re-Instated libpaper-utils:ppc64el
339s   Re-Instated xdg-utils:ppc64el
339s   Re-Instated libblas3:ppc64el
339s   Re-Instated fonts-dejavu-mono:ppc64el
339s   Re-Instated fonts-dejavu-core:ppc64el
339s   Re-Instated fontconfig-config:ppc64el
339s   Re-Instated libfontconfig1:ppc64el
339s   Re-Instated libpixman-1-0:ppc64el
339s   Re-Instated libxcb-render0:ppc64el
339s   Re-Instated libxcb-shm0:ppc64el
339s   Re-Instated libxrender1:ppc64el
339s   Re-Instated libcairo2:ppc64el
339s   Re-Instated libgfortran5:ppc64el
339s   Re-Instated liblapack3:ppc64el
339s   Re-Instated fontconfig:ppc64el
339s   Re-Instated libgraphite2-3:ppc64el
339s   Re-Instated libharfbuzz0b:ppc64el
339s   Re-Instated libthai-data:ppc64el
339s   Re-Instated libdatrie1:ppc64el
339s   Re-Instated libthai0:ppc64el
339s   Re-Instated libpango-1.0-0:ppc64el
339s   Re-Instated libpangoft2-1.0-0:ppc64el
339s   Re-Instated libpangocairo-1.0-0:ppc64el
339s   Re-Instated libtcl8.6:ppc64el
339s   Re-Instated libjbig0:ppc64el
339s   Re-Instated liblerc4:ppc64el
339s   Re-Instated libsharpyuv0:ppc64el
339s   Re-Instated libwebp7:ppc64el
339s   Re-Instated libtiff6:ppc64el
339s   Re-Instated libxft2:ppc64el
339s   Re-Instated x11-common:ppc64el
339s   Re-Instated libxss1:ppc64el
339s   Re-Instated libtk8.6:ppc64el
339s   Re-Instated libice6:ppc64el
339s   Re-Instated libsm6:ppc64el
339s   Re-Instated libxt6t64:ppc64el
339s   Re-Instated r-base-core:ppc64el
339s   Re-Instated rsem:ppc64el
339s   Re-Instated libbamtools2.5.2:ppc64el
339s   Re-Instated libboost-filesystem1.83.0:ppc64el
339s   Re-Instated libboost-program-options1.83.0:ppc64el
339s   Re-Instated libboost-thread1.83.0:ppc64el
339s   Re-Instated libprotobuf32t64:ppc64el
339s   Re-Instated berkeley-express:ppc64el
339s   Re-Instated libjbzip2-java:ppc64el
339s   Re-Instated libgdk-pixbuf2.0-common:ppc64el
339s   Re-Instated libgdk-pixbuf-2.0-0:ppc64el
339s   Re-Instated gtk-update-icon-cache:ppc64el
339s   Re-Instated hicolor-icon-theme:ppc64el
339s   Re-Instated humanity-icon-theme:ppc64el
339s   Re-Instated ubuntu-mono:ppc64el
339s   Re-Instated adwaita-icon-theme:ppc64el
339s   Re-Instated at-spi2-common:ppc64el
339s   Re-Instated libatk1.0-0t64:ppc64el
339s   Re-Instated libxi6:ppc64el
339s   Re-Instated libatspi2.0-0t64:ppc64el
339s   Re-Instated libatk-bridge2.0-0t64:ppc64el
339s   Re-Instated libcairo-gobject2:ppc64el
339s   Re-Instated libcolord2:ppc64el
339s   Re-Instated libavahi-common-data:ppc64el
339s   Re-Instated libavahi-common3:ppc64el
339s   Re-Instated libavahi-client3:ppc64el
339s   Re-Instated libcups2t64:ppc64el
339s   Re-Instated libepoxy0:ppc64el
339s   Re-Instated libwayland-client0:ppc64el
339s   Re-Instated libwayland-cursor0:ppc64el
339s   Re-Instated libwayland-egl1:ppc64el
339s   Re-Instated libxcomposite1:ppc64el
339s   Re-Instated libxfixes3:ppc64el
339s   Re-Instated libxcursor1:ppc64el
339s   Re-Instated libxdamage1:ppc64el
339s   Re-Instated libxinerama1:ppc64el
339s   Re-Instated libxrandr2:ppc64el
339s   Re-Instated libdconf1:ppc64el
339s   Re-Instated dconf-service:ppc64el
339s   Re-Instated dconf-gsettings-backend:ppc64el
339s   Re-Instated libgtk-3-common:ppc64el
339s   Re-Instated libgtk-3-0t64:ppc64el
339s   Re-Instated libglvnd0:ppc64el
339s   Re-Instated libglapi-mesa:ppc64el
339s   Re-Instated libx11-xcb1:ppc64el
339s   Re-Instated libxcb-dri2-0:ppc64el
339s   Re-Instated libxcb-dri3-0:ppc64el
339s   Re-Instated libxcb-glx0:ppc64el
339s   Re-Instated libxcb-present0:ppc64el
339s   Re-Instated libxcb-randr0:ppc64el
339s   Re-Instated libxcb-sync1:ppc64el
339s   Re-Instated libxcb-xfixes0:ppc64el
339s   Re-Instated libxshmfence1:ppc64el
339s   Re-Instated libxxf86vm1:ppc64el
339s   Re-Instated libdrm-amdgpu1:ppc64el
339s   Re-Instated libdrm-radeon1:ppc64el
339s   Re-Instated mesa-libgallium:ppc64el
339s   Re-Instated libvulkan1:ppc64el
339s   Re-Instated libwayland-server0:ppc64el
339s   Re-Instated libgbm1:ppc64el
339s   Re-Instated libgl1-mesa-dri:ppc64el
339s   Re-Instated libglx-mesa0:ppc64el
339s   Re-Instated libglx0:ppc64el
339s   Re-Instated libgl1:ppc64el
339s   Re-Instated libasound2-data:ppc64el
339s   Re-Instated libasound2t64:ppc64el
339s   Re-Instated libgif7:ppc64el
339s   Re-Instated libxtst6:ppc64el
339s   Re-Instated openjdk-21-jre:ppc64el
339s   Re-Instated default-jre:ppc64el
339s   Re-Instated trimmomatic:ppc64el
339s   Re-Instated parafly:ppc64el
339s   Re-Instated ncbi-data:ppc64el
339s   Re-Instated libmbedcrypto7t64:ppc64el
339s   Re-Instated libmbedx509-1t64:ppc64el
339s   Re-Instated libmbedtls14t64:ppc64el
339s   Re-Instated ncbi-blast+:ppc64el
339s   Re-Instated python3-numpy:ppc64el
339s   Re-Instated python3-pysam:ppc64el
339s   Re-Instated python3-htseq:ppc64el
339s   Re-Instated subread:ppc64el
339s   Re-Instated kallisto:ppc64el
339s   Re-Instated trinityrnaseq:ppc64el
339s Broken autopkgtest-satdep:ppc64el Depends on trinityrnaseq-examples:ppc64el < none | 2.15.1+dfsg-5build1 @un uH >
339s   Considering trinityrnaseq-examples:ppc64el 1 as a solution to autopkgtest-satdep:ppc64el 9998
339s   Re-Instated trinityrnaseq-examples:ppc64el
339s Broken autopkgtest-satdep:ppc64el Depends on r-cran-tidyverse:ppc64el < none | 2.0.0+dfsg-1 @un uH >
339s   Considering r-cran-tidyverse:ppc64el 1 as a solution to autopkgtest-satdep:ppc64el 9998
339s   Re-Instated r-cran-backports:ppc64el
339s   Re-Instated r-cran-cli:ppc64el
339s   Re-Instated r-cran-generics:ppc64el
339s   Re-Instated r-cran-glue:ppc64el
339s   Re-Instated r-cran-rlang:ppc64el
339s   Re-Instated r-cran-lifecycle:ppc64el
339s   Re-Instated r-cran-magrittr:ppc64el
339s   Re-Instated r-cran-fansi:ppc64el
339s   Re-Instated r-cran-utf8:ppc64el
339s   Re-Instated r-cran-vctrs:ppc64el
339s   Re-Instated r-cran-pillar:ppc64el
339s   Re-Instated r-cran-r6:ppc64el
339s   Re-Instated r-cran-pkgconfig:ppc64el
339s   Re-Instated r-cran-tibble:ppc64el
339s   Re-Instated r-cran-withr:ppc64el
339s   Re-Instated r-cran-tidyselect:ppc64el
339s   Re-Instated r-cran-dplyr:ppc64el
339s   Re-Instated r-cran-purrr:ppc64el
339s   Re-Instated r-cran-stringi:ppc64el
339s   Re-Instated r-cran-stringr:ppc64el
339s   Re-Instated r-cran-cpp11:ppc64el
339s   Re-Instated r-cran-tidyr:ppc64el
339s   Re-Instated r-cran-broom:ppc64el
339s   Re-Instated r-cran-fastmap:ppc64el
339s   Re-Instated r-cran-cachem:ppc64el
339s   Re-Instated r-cran-memoise:ppc64el
339s   Re-Instated r-cran-conflicted:ppc64el
339s   Re-Instated r-cran-blob:ppc64el
339s   Re-Instated r-cran-dbi:ppc64el
339s   Re-Instated r-cran-dbplyr:ppc64el
339s   Re-Instated r-cran-data.table:ppc64el
339s   Re-Instated r-cran-dtplyr:ppc64el
339s   Re-Instated r-cran-ellipsis:ppc64el
339s   Re-Instated r-cran-forcats:ppc64el
339s   Re-Instated r-cran-gtable:ppc64el
339s   Re-Instated r-cran-isoband:ppc64el
339s   Re-Instated r-cran-mass:ppc64el
339s   Re-Instated r-cran-lattice:ppc64el
339s   Re-Instated r-cran-nlme:ppc64el
339s   Re-Instated r-cran-matrix:ppc64el
339s   Re-Instated r-cran-mgcv:ppc64el
339s   Re-Instated r-cran-farver:ppc64el
339s   Re-Instated r-cran-labeling:ppc64el
339s   Re-Instated r-cran-colorspace:ppc64el
339s   Re-Instated r-cran-munsell:ppc64el
339s   Re-Instated r-cran-rcolorbrewer:ppc64el
339s   Re-Instated r-cran-viridislite:ppc64el
339s   Re-Instated r-cran-scales:ppc64el
339s   Re-Instated r-cran-ggplot2:ppc64el
339s   Re-Instated r-cran-fs:ppc64el
339s   Re-Instated r-cran-curl:ppc64el
339s   Re-Instated r-cran-jsonlite:ppc64el
339s   Re-Instated r-cran-mime:ppc64el
339s   Re-Instated r-cran-sys:ppc64el
339s   Re-Instated r-cran-askpass:ppc64el
339s   Re-Instated r-cran-openssl:ppc64el
339s   Re-Instated r-cran-httr:ppc64el
339s   Re-Instated r-cran-rappdirs:ppc64el
339s   Re-Instated r-cran-gargle:ppc64el
339s   Re-Instated r-cran-uuid:ppc64el
339s   Re-Instated r-cran-googledrive:ppc64el
339s   Re-Instated r-cran-rematch:ppc64el
339s   Re-Instated r-cran-cellranger:ppc64el
339s   Re-Instated r-cran-ids:ppc64el
339s   Re-Instated r-cran-rematch2:ppc64el
339s   Re-Instated r-cran-googlesheets4:ppc64el
339s   Re-Instated r-cran-hms:ppc64el
339s   Re-Instated r-cran-clipr:ppc64el
339s   Re-Instated r-cran-crayon:ppc64el
339s   Re-Instated r-cran-bit:ppc64el
339s   Re-Instated r-cran-bit64:ppc64el
339s   Re-Instated r-cran-tzdb:ppc64el
339s   Re-Instated r-cran-prettyunits:ppc64el
339s   Re-Instated r-cran-progress:ppc64el
339s   Re-Instated r-cran-vroom:ppc64el
339s   Re-Instated r-cran-littler:ppc64el
339s   Re-Instated littler:ppc64el
339s   Re-Instated r-cran-pkgkitten:ppc64el
339s   Re-Instated r-cran-rcpp:ppc64el
339s   Re-Instated r-cran-readr:ppc64el
339s   Re-Instated r-cran-haven:ppc64el
339s   Re-Instated r-cran-timechange:ppc64el
339s   Re-Instated r-cran-lubridate:ppc64el
339s   Re-Instated r-cran-modelr:ppc64el
339s   Re-Instated r-cran-systemfonts:ppc64el
339s   Re-Instated r-cran-textshaping:ppc64el
339s   Re-Instated r-cran-ragg:ppc64el
339s   Re-Instated r-cran-readxl:ppc64el
339s   Re-Instated r-cran-ps:ppc64el
339s   Re-Instated r-cran-processx:ppc64el
339s   Re-Instated r-cran-callr:ppc64el
339s   Re-Instated r-cran-evaluate:ppc64el
339s   Re-Instated r-cran-xfun:ppc64el
339s   Re-Instated libjs-highlight.js:ppc64el
339s   Re-Instated libjs-jquery:ppc64el
339s   Re-Instated r-cran-highr:ppc64el
339s   Re-Instated r-cran-yaml:ppc64el
339s   Re-Instated fonts-mathjax:ppc64el
339s   Re-Instated libjs-mathjax:ppc64el
339s   Re-Instated fonts-glyphicons-halflings:ppc64el
339s   Re-Instated libjs-bootstrap:ppc64el
339s   Re-Instated libjs-jquery-datatables:ppc64el
339s   Re-Instated node-normalize.css:ppc64el
339s   Re-Instated r-cran-knitr:ppc64el
339s   Re-Instated r-cran-base64enc:ppc64el
339s   Re-Instated r-cran-digest:ppc64el
339s   Re-Instated r-cran-htmltools:ppc64el
339s   Re-Instated r-cran-jquerylib:ppc64el
339s   Re-Instated r-cran-sass:ppc64el
339s   Re-Instated node-bootstrap-sass:ppc64el
339s   Re-Instated javascript-common:ppc64el
339s   Re-Instated libjs-popper.js:ppc64el
339s   Re-Instated libjs-bootstrap4:ppc64el
339s   Re-Instated r-cran-bslib:ppc64el
339s   Re-Instated r-cran-fontawesome:ppc64el
339s   Re-Instated r-cran-tinytex:ppc64el
339s   Re-Instated libjs-jquery-ui:ppc64el
339s   Re-Instated libjs-modernizr:ppc64el
339s   Re-Instated libjs-prettify:ppc64el
339s   Re-Instated fonts-font-awesome:ppc64el
339s   Re-Instated pandoc-data:ppc64el
339s   Re-Instated liblua5.4-0:ppc64el
339s   Re-Instated pandoc:ppc64el
339s   Re-Instated r-cran-later:ppc64el
339s   Re-Instated r-cran-promises:ppc64el
339s   Re-Instated r-cran-httpuv:ppc64el
339s   Re-Instated r-cran-xtable:ppc64el
339s   Re-Instated r-cran-sourcetools:ppc64el
339s   Re-Instated r-cran-commonmark:ppc64el
339s   Re-Instated libjs-json:ppc64el
339s   Re-Instated libjs-es5-shim:ppc64el
339s   Re-Instated libjs-twitter-bootstrap-datepicker:ppc64el
339s   Re-Instated libjs-sifter.js:ppc64el
339s   Re-Instated libjs-microplugin.js:ppc64el
339s   Re-Instated libjs-jquery-selectize.js:ppc64el
339s   Re-Instated libjs-d3:ppc64el
339s   Re-Instated node-html5shiv:ppc64el
339s   Re-Instated r-cran-shiny:ppc64el
339s   Re-Instated r-cran-rmarkdown:ppc64el
339s   Re-Instated r-cran-rstudioapi:ppc64el
339s   Re-Instated r-cran-reprex:ppc64el
339s   Re-Instated r-cran-selectr:ppc64el
339s   Re-Instated r-cran-xml2:ppc64el
339s   Re-Instated r-cran-rvest:ppc64el
339s   Re-Instated r-cran-tidyverse:ppc64el
339s Broken autopkgtest-satdep:ppc64el Depends on libpicard-java:ppc64el < none | 3.1.1+dfsg-1 @un uH >
339s   Considering libpicard-java:ppc64el 1 as a solution to autopkgtest-satdep:ppc64el 9998
339s   Re-Instated libapache-pom-java:ppc64el
339s   Re-Instated libcommons-parent-java:ppc64el
339s   Re-Instated libcommons-compress-java:ppc64el
339s   Re-Instated libcommons-logging-java:ppc64el
339s   Re-Instated libcommons-jexl2-java:ppc64el
339s   Re-Instated libmjson-java:ppc64el
339s     Reinst Failed early because of libngs-java:ppc64el
339s     Reinst Failed because of libhtsjdk-java:ppc64el
339s Broken autopkgtest-satdep:ppc64el Depends on salmon:ppc64el < none @un H >
339s Broken autopkgtest-satdep:ppc64el Depends on r-bioc-edger:ppc64el < none | 4.2.1+dfsg-1 @un uH >
339s   Considering r-bioc-edger:ppc64el 1 as a solution to autopkgtest-satdep:ppc64el 9998
339s   Re-Instated r-bioc-biocgenerics:ppc64el
339s   Re-Instated r-cran-statmod:ppc64el
339s   Re-Instated r-bioc-limma:ppc64el
339s   Re-Instated r-cran-locfit:ppc64el
339s   Re-Instated r-bioc-edger:ppc64el
339s Broken autopkgtest-satdep:ppc64el Depends on r-bioc-deseq2:ppc64el < none | 1.44.0+dfsg-1 @un uH >
339s   Considering r-bioc-deseq2:ppc64el 1 as a solution to autopkgtest-satdep:ppc64el 9998
339s   Re-Instated r-bioc-s4vectors:ppc64el
339s   Re-Instated r-bioc-iranges:ppc64el
339s   Re-Instated r-bioc-ucsc.utils:ppc64el
339s   Re-Instated r-bioc-genomeinfodbdata:ppc64el
339s   Re-Instated r-bioc-genomeinfodb:ppc64el
339s   Re-Instated zlib1g-dev:ppc64el
339s   Re-Instated r-bioc-zlibbioc:ppc64el
339s   Re-Instated r-bioc-xvector:ppc64el
339s   Re-Instated r-bioc-genomicranges:ppc64el
339s   Re-Instated r-cran-matrixstats:ppc64el
339s   Re-Instated r-bioc-matrixgenerics:ppc64el
339s   Re-Instated r-bioc-biobase:ppc64el
339s   Re-Instated r-cran-abind:ppc64el
339s   Re-Instated r-bioc-s4arrays:ppc64el
339s   Re-Instated r-bioc-sparsearray:ppc64el
339s   Re-Instated r-bioc-delayedarray:ppc64el
339s   Re-Instated r-bioc-summarizedexperiment:ppc64el
339s   Re-Instated r-cran-formatr:ppc64el
339s   Re-Instated r-cran-lambda.r:ppc64el
339s   Re-Instated r-cran-futile.options:ppc64el
339s   Re-Instated r-cran-futile.logger:ppc64el
339s   Re-Instated r-cran-snow:ppc64el
339s   Re-Instated r-cran-codetools:ppc64el
339s   Re-Instated libitm1:ppc64el
339s   Re-Instated libasan8:ppc64el
339s   Re-Instated liblsan0:ppc64el
339s   Re-Instated libtsan2:ppc64el
339s   Re-Instated libubsan1:ppc64el
339s   Re-Instated libquadmath0:ppc64el
339s   Re-Instated libgcc-14-dev:ppc64el
339s   Re-Instated libstdc++-14-dev:ppc64el
339s   Re-Instated libboost1.83-dev:ppc64el
339s   Re-Instated libboost-dev:ppc64el
339s   Re-Instated r-cran-bh:ppc64el
339s   Re-Instated r-bioc-biocparallel:ppc64el
339s   Re-Instated r-cran-rcpparmadillo:ppc64el
339s   Re-Instated r-bioc-deseq2:ppc64el
339s Broken autopkgtest-satdep:ppc64el Depends on r-cran-cluster:ppc64el < none | 2.1.6-1build1 @un uH >
339s   Considering r-cran-cluster:ppc64el 1 as a solution to autopkgtest-satdep:ppc64el 9998
339s   Re-Instated r-cran-cluster:ppc64el
339s Broken autopkgtest-satdep:ppc64el Depends on r-bioc-qvalue:ppc64el < none | 2.36.0-1 @un uH >
339s   Considering r-bioc-qvalue:ppc64el 1 as a solution to autopkgtest-satdep:ppc64el 9998
339s   Re-Instated r-cran-plyr:ppc64el
339s   Re-Instated r-cran-reshape2:ppc64el
339s   Re-Instated r-bioc-qvalue:ppc64el
339s Broken autopkgtest-satdep:ppc64el Depends on r-cran-fastcluster:ppc64el < none | 1.2.6-1build1 @un uH >
339s   Considering r-cran-fastcluster:ppc64el 1 as a solution to autopkgtest-satdep:ppc64el 9998
339s   Re-Instated r-cran-fastcluster:ppc64el
339s Broken autopkgtest-satdep:ppc64el Depends on r-bioc-goseq:ppc64el < none | 1.56.0-1 @un uH >
339s   Considering r-bioc-goseq:ppc64el 1 as a solution to autopkgtest-satdep:ppc64el 9998
339s   Re-Instated r-cran-biasedurn:ppc64el
339s   Re-Instated r-cran-xml:ppc64el
339s   Re-Instated r-bioc-biostrings:ppc64el
339s   Re-Instated r-cran-bitops:ppc64el
339s   Re-Instated r-bioc-rhtslib:ppc64el
339s   Re-Instated r-bioc-rsamtools:ppc64el
339s   Re-Instated r-bioc-genomicalignments:ppc64el
339s   Re-Instated r-bioc-biocio:ppc64el
339s   Re-Instated r-cran-rcurl:ppc64el
339s   Re-Instated r-cran-rjson:ppc64el
339s   Re-Instated r-cran-restfulr:ppc64el
339s   Re-Instated r-bioc-rtracklayer:ppc64el
339s   Re-Instated r-cran-plogr:ppc64el
339s   Re-Instated r-cran-rsqlite:ppc64el
339s   Re-Instated r-cran-png:ppc64el
339s   Re-Instated r-bioc-keggrest:ppc64el
339s   Re-Instated r-bioc-annotationdbi:ppc64el
339s   Re-Instated libjs-lunr:ppc64el
339s   Re-Instated r-cran-bookdown:ppc64el
339s   Re-Instated r-cran-biocmanager:ppc64el
339s   Re-Instated tex-common:ppc64el
339s   Re-Instated libio-string-perl:ppc64el
339s   Re-Instated liblatex-tounicode-perl:ppc64el
339s   Re-Instated libbibtex-parser-perl:ppc64el
339s   Re-Instated libkpathsea6:ppc64el
339s   Re-Instated libptexenc1:ppc64el
339s   Re-Instated libsynctex2:ppc64el
339s   Re-Instated libtexlua53-5:ppc64el
339s   Re-Instated t1utils:ppc64el
339s   Re-Instated libmpfi0:ppc64el
339s   Re-Instated libpotrace0:ppc64el
339s   Re-Instated libteckit0:ppc64el
339s   Re-Instated libxmu6:ppc64el
339s   Re-Instated libxpm4:ppc64el
339s   Re-Instated libxaw7:ppc64el
339s   Re-Instated libzzip-0-13t64:ppc64el
339s   Re-Instated texlive-binaries:ppc64el
339s   Re-Instated texlive-base:ppc64el
339s   Re-Instated fonts-lmodern:ppc64el
339s   Re-Instated texlive-latex-base:ppc64el
339s   Re-Instated texlive-bibtex-extra:ppc64el
339s   Re-Instated r-bioc-biocversion:ppc64el
339s   Re-Instated r-bioc-biocstyle:ppc64el
339s   Re-Instated r-bioc-genomicfeatures:ppc64el
339s   Re-Instated r-cran-httr2:ppc64el
339s   Re-Instated r-cran-filelock:ppc64el
339s   Re-Instated r-bioc-biocfilecache:ppc64el
339s   Re-Instated r-bioc-biomart:ppc64el
339s   Re-Instated r-bioc-txdbmaker:ppc64el
339s   Re-Instated r-bioc-genelendatabase:ppc64el
339s   Re-Instated r-bioc-go.db:ppc64el
339s   Re-Instated r-bioc-goseq:ppc64el
339s Broken autopkgtest-satdep:ppc64el Depends on r-cran-argparse:ppc64el < none | 2.2.3+dfsg-1 @un uH >
339s   Considering r-cran-argparse:ppc64el 1 as a solution to autopkgtest-satdep:ppc64el 9998
339s   Re-Instated r-cran-findpython:ppc64el
339s   Re-Instated r-cran-argparse:ppc64el
339s Broken autopkgtest-satdep:ppc64el Depends on r-cran-goplot:ppc64el < none | 1.0.2-2 @un uH >
339s   Considering r-cran-goplot:ppc64el 1 as a solution to autopkgtest-satdep:ppc64el 9998
339s   Re-Instated r-cran-ggdendro:ppc64el
339s   Re-Instated r-cran-gridextra:ppc64el
339s   Re-Instated r-cran-goplot:ppc64el
339s Broken autopkgtest-satdep:ppc64el Depends on r-cran-kernsmooth:ppc64el < none | 2.23-24-1 @un uH >
339s   Considering r-cran-kernsmooth:ppc64el 1 as a solution to autopkgtest-satdep:ppc64el 9998
339s   Re-Instated r-cran-kernsmooth:ppc64el
339s Broken autopkgtest-satdep:ppc64el Depends on hisat2:ppc64el < none | 2.2.1-5 @un uH >
339s   Considering hisat2:ppc64el 1 as a solution to autopkgtest-satdep:ppc64el 9998
339s   Re-Instated hisat2:ppc64el
339s Broken autopkgtest-satdep:ppc64el Depends on python3-hisat2:ppc64el < none | 2.2.1-5 @un uH >
339s   Considering python3-hisat2:ppc64el 1 as a solution to autopkgtest-satdep:ppc64el 9998
339s   Re-Instated python3-hisat2:ppc64el
339s Broken autopkgtest-satdep:ppc64el Depends on r-bioc-dexseq:ppc64el < none | 1.50.0+dfsg-1 @un uH >
339s   Considering r-bioc-dexseq:ppc64el 1 as a solution to autopkgtest-satdep:ppc64el 9998
339s   Re-Instated r-cran-hwriter:ppc64el
339s   Re-Instated r-bioc-annotate:ppc64el
339s   Re-Instated r-bioc-geneplotter:ppc64el
339s   Re-Instated r-cran-survival:ppc64el
339s   Re-Instated r-bioc-genefilter:ppc64el
339s   Re-Instated r-bioc-dexseq:ppc64el
339s Done
339s Some packages could not be installed. This may mean that you have
339s requested an impossible situation or if you are using the unstable
339s distribution that some required packages have not yet been created
339s or been moved out of Incoming.
339s The following information may help to resolve the situation:
339s 
339s The following packages have unmet dependencies:
339s  autopkgtest-satdep : Depends: libpicard-java but it is not going to be installed
339s                       Depends: salmon but it is not installable
339s E: Unable to correct problems, you have held broken packages.
339s autopkgtest: WARNING: Test dependencies are unsatisfiable with using apt pinning. Retrying with using all packages from plucky-proposed
340s Reading package lists...
340s Building dependency tree...
340s Reading state information...
340s Starting pkgProblemResolver with broken count: 1
340s Starting 2 pkgProblemResolver with broken count: 1
340s Investigating (0) autopkgtest-satdep:ppc64el < none -> 0 @un puN Ib >
340s Broken autopkgtest-satdep:ppc64el Depends on trinityrnaseq:ppc64el < none | 2.15.2+dfsg-1 @un uH >
340s   Considering trinityrnaseq:ppc64el 1 as a solution to autopkgtest-satdep:ppc64el 9998
340s   Re-Instated libgomp1:ppc64el
340s   Re-Instated libdeflate0:ppc64el
340s   Re-Instated libhtscodecs2:ppc64el
340s   Re-Instated libhts3t64:ppc64el
340s   Re-Instated ca-certificates-java:ppc64el
340s   Re-Instated java-common:ppc64el
340s   Re-Instated liblcms2-2:ppc64el
340s   Re-Instated libjpeg-turbo8:ppc64el
340s   Re-Instated libjpeg8:ppc64el
340s   Re-Instated libpcsclite1:ppc64el
340s   Re-Instated openjdk-21-jre-headless:ppc64el
340s   Re-Instated default-jre-headless:ppc64el
340s   Re-Instated jaligner:ppc64el
340s   Re-Instated libgetopt-java:ppc64el
340s   Re-Instated libatinject-jsr330-api-java:ppc64el
340s   Re-Instated liberror-prone-java:ppc64el
340s   Re-Instated libjsr305-java:ppc64el
340s   Re-Instated libguava-java:ppc64el
340s   Re-Instated libjung-free-java:ppc64el
340s   Re-Instated bowtie:ppc64el
340s   Re-Instated bowtie2:ppc64el
340s   Re-Instated libencode-locale-perl:ppc64el
340s   Re-Instated libtimedate-perl:ppc64el
340s   Re-Instated libhttp-date-perl:ppc64el
340s   Re-Instated libfile-listing-perl:ppc64el
340s   Re-Instated libhtml-tagset-perl:ppc64el
340s   Re-Instated liburi-perl:ppc64el
340s   Re-Instated libhtml-parser-perl:ppc64el
340s   Re-Instated libhtml-tree-perl:ppc64el
340s   Re-Instated libclone-perl:ppc64el
340s   Re-Instated libio-html-perl:ppc64el
340s   Re-Instated liblwp-mediatypes-perl:ppc64el
340s   Re-Instated libhttp-message-perl:ppc64el
340s   Re-Instated libhttp-cookies-perl:ppc64el
340s   Re-Instated libhttp-negotiate-perl:ppc64el
340s   Re-Instated perl-openssl-defaults:ppc64el
340s   Re-Instated libnet-ssleay-perl:ppc64el
340s   Re-Instated libio-socket-ssl-perl:ppc64el
340s   Re-Instated libnet-http-perl:ppc64el
340s   Re-Instated liblwp-protocol-https-perl:ppc64el
340s   Re-Instated libtry-tiny-perl:ppc64el
340s   Re-Instated libwww-robotrules-perl:ppc64el
340s   Re-Instated libwww-perl:ppc64el
340s   Re-Instated samtools:ppc64el
340s   Re-Instated libjellyfish-2.0-2:ppc64el
340s   Re-Instated jellyfish:ppc64el
340s   Re-Instated zip:ppc64el
340s   Re-Instated unzip:ppc64el
340s   Re-Instated libpaper1:ppc64el
340s   Re-Instated libpaper-utils:ppc64el
340s   Re-Instated xdg-utils:ppc64el
340s   Re-Instated libblas3:ppc64el
340s   Re-Instated fonts-dejavu-mono:ppc64el
340s   Re-Instated fonts-dejavu-core:ppc64el
340s   Re-Instated fontconfig-config:ppc64el
340s   Re-Instated libfontconfig1:ppc64el
340s   Re-Instated libpixman-1-0:ppc64el
340s   Re-Instated libxcb-render0:ppc64el
340s   Re-Instated libxcb-shm0:ppc64el
340s   Re-Instated libxrender1:ppc64el
340s   Re-Instated libcairo2:ppc64el
340s   Re-Instated libgfortran5:ppc64el
340s   Re-Instated liblapack3:ppc64el
341s   Re-Instated fontconfig:ppc64el
341s   Re-Instated libgraphite2-3:ppc64el
341s   Re-Instated libharfbuzz0b:ppc64el
341s   Re-Instated libthai-data:ppc64el
341s   Re-Instated libdatrie1:ppc64el
341s   Re-Instated libthai0:ppc64el
341s   Re-Instated libpango-1.0-0:ppc64el
341s   Re-Instated libpangoft2-1.0-0:ppc64el
341s   Re-Instated libpangocairo-1.0-0:ppc64el
341s   Re-Instated libtcl8.6:ppc64el
341s   Re-Instated libjbig0:ppc64el
341s   Re-Instated liblerc4:ppc64el
341s   Re-Instated libsharpyuv0:ppc64el
341s   Re-Instated libwebp7:ppc64el
341s   Re-Instated libtiff6:ppc64el
341s   Re-Instated libxft2:ppc64el
341s   Re-Instated x11-common:ppc64el
341s   Re-Instated libxss1:ppc64el
341s   Re-Instated libtk8.6:ppc64el
341s   Re-Instated libice6:ppc64el
341s   Re-Instated libsm6:ppc64el
341s   Re-Instated libxt6t64:ppc64el
341s   Re-Instated r-base-core:ppc64el
341s   Re-Instated rsem:ppc64el
341s   Re-Instated libbamtools2.5.2:ppc64el
341s   Re-Instated libboost-filesystem1.83.0:ppc64el
341s   Re-Instated libboost-program-options1.83.0:ppc64el
341s   Re-Instated libboost-thread1.83.0:ppc64el
341s   Re-Instated libprotobuf32t64:ppc64el
341s   Re-Instated berkeley-express:ppc64el
341s   Re-Instated libjbzip2-java:ppc64el
341s   Re-Instated libgdk-pixbuf2.0-common:ppc64el
341s   Re-Instated libgdk-pixbuf-2.0-0:ppc64el
341s   Re-Instated gtk-update-icon-cache:ppc64el
341s   Re-Instated hicolor-icon-theme:ppc64el
341s   Re-Instated humanity-icon-theme:ppc64el
341s   Re-Instated ubuntu-mono:ppc64el
341s   Re-Instated adwaita-icon-theme:ppc64el
341s   Re-Instated at-spi2-common:ppc64el
341s   Re-Instated libatk1.0-0t64:ppc64el
341s   Re-Instated libxi6:ppc64el
341s   Re-Instated libatspi2.0-0t64:ppc64el
341s   Re-Instated libatk-bridge2.0-0t64:ppc64el
341s   Re-Instated libcairo-gobject2:ppc64el
341s   Re-Instated libcolord2:ppc64el
341s   Re-Instated libavahi-common-data:ppc64el
341s   Re-Instated libavahi-common3:ppc64el
341s   Re-Instated libavahi-client3:ppc64el
341s   Re-Instated libcups2t64:ppc64el
341s   Re-Instated libepoxy0:ppc64el
341s   Re-Instated libwayland-client0:ppc64el
341s   Re-Instated libwayland-cursor0:ppc64el
341s   Re-Instated libwayland-egl1:ppc64el
341s   Re-Instated libxcomposite1:ppc64el
341s   Re-Instated libxfixes3:ppc64el
341s   Re-Instated libxcursor1:ppc64el
341s   Re-Instated libxdamage1:ppc64el
341s   Re-Instated libxinerama1:ppc64el
341s   Re-Instated libxrandr2:ppc64el
341s   Re-Instated libdconf1:ppc64el
341s   Re-Instated dconf-service:ppc64el
341s   Re-Instated dconf-gsettings-backend:ppc64el
341s   Re-Instated libgtk-3-common:ppc64el
341s   Re-Instated libgtk-3-0t64:ppc64el
341s   Re-Instated libglvnd0:ppc64el
341s   Re-Instated libglapi-mesa:ppc64el
341s   Re-Instated libx11-xcb1:ppc64el
341s   Re-Instated libxcb-dri2-0:ppc64el
341s   Re-Instated libxcb-dri3-0:ppc64el
341s   Re-Instated libxcb-glx0:ppc64el
341s   Re-Instated libxcb-present0:ppc64el
341s   Re-Instated libxcb-randr0:ppc64el
341s   Re-Instated libxcb-sync1:ppc64el
341s   Re-Instated libxcb-xfixes0:ppc64el
341s   Re-Instated libxshmfence1:ppc64el
341s   Re-Instated libxxf86vm1:ppc64el
341s   Re-Instated libdrm-amdgpu1:ppc64el
341s   Re-Instated libdrm-radeon1:ppc64el
341s   Re-Instated mesa-libgallium:ppc64el
341s   Re-Instated libvulkan1:ppc64el
341s   Re-Instated libwayland-server0:ppc64el
341s   Re-Instated libgbm1:ppc64el
341s   Re-Instated libgl1-mesa-dri:ppc64el
341s   Re-Instated libglx-mesa0:ppc64el
341s   Re-Instated libglx0:ppc64el
341s   Re-Instated libgl1:ppc64el
341s   Re-Instated libasound2-data:ppc64el
341s   Re-Instated libasound2t64:ppc64el
341s   Re-Instated libgif7:ppc64el
341s   Re-Instated libxtst6:ppc64el
341s   Re-Instated openjdk-21-jre:ppc64el
341s   Re-Instated default-jre:ppc64el
341s   Re-Instated trimmomatic:ppc64el
341s   Re-Instated parafly:ppc64el
341s   Re-Instated ncbi-data:ppc64el
341s   Re-Instated libmbedcrypto7t64:ppc64el
341s   Re-Instated libmbedx509-1t64:ppc64el
341s   Re-Instated libmbedtls14t64:ppc64el
341s   Re-Instated ncbi-blast+:ppc64el
341s   Re-Instated python3-numpy:ppc64el
341s   Re-Instated python3-pysam:ppc64el
341s   Re-Instated python3-htseq:ppc64el
341s   Re-Instated subread:ppc64el
341s   Re-Instated kallisto:ppc64el
341s   Re-Instated trinityrnaseq:ppc64el
341s Broken autopkgtest-satdep:ppc64el Depends on trinityrnaseq-examples:ppc64el < none | 2.15.2+dfsg-1 @un uH >
341s   Considering trinityrnaseq-examples:ppc64el 1 as a solution to autopkgtest-satdep:ppc64el 9998
341s   Re-Instated trinityrnaseq-examples:ppc64el
341s Broken autopkgtest-satdep:ppc64el Depends on r-cran-tidyverse:ppc64el < none | 2.0.0+dfsg-1 @un uH >
341s   Considering r-cran-tidyverse:ppc64el 1 as a solution to autopkgtest-satdep:ppc64el 9998
341s   Re-Instated r-cran-backports:ppc64el
341s   Re-Instated r-cran-cli:ppc64el
341s   Re-Instated r-cran-generics:ppc64el
341s   Re-Instated r-cran-glue:ppc64el
341s   Re-Instated r-cran-rlang:ppc64el
341s   Re-Instated r-cran-lifecycle:ppc64el
341s   Re-Instated r-cran-magrittr:ppc64el
341s   Re-Instated r-cran-fansi:ppc64el
341s   Re-Instated r-cran-utf8:ppc64el
341s   Re-Instated r-cran-vctrs:ppc64el
341s   Re-Instated r-cran-pillar:ppc64el
341s   Re-Instated r-cran-r6:ppc64el
341s   Re-Instated r-cran-pkgconfig:ppc64el
341s   Re-Instated r-cran-tibble:ppc64el
341s   Re-Instated r-cran-withr:ppc64el
341s   Re-Instated r-cran-tidyselect:ppc64el
341s   Re-Instated r-cran-dplyr:ppc64el
341s   Re-Instated r-cran-purrr:ppc64el
341s   Re-Instated r-cran-stringi:ppc64el
341s   Re-Instated r-cran-stringr:ppc64el
341s   Re-Instated r-cran-cpp11:ppc64el
341s   Re-Instated r-cran-tidyr:ppc64el
341s   Re-Instated r-cran-broom:ppc64el
341s   Re-Instated r-cran-fastmap:ppc64el
341s   Re-Instated r-cran-cachem:ppc64el
341s   Re-Instated r-cran-memoise:ppc64el
341s   Re-Instated r-cran-conflicted:ppc64el
341s   Re-Instated r-cran-blob:ppc64el
341s   Re-Instated r-cran-dbi:ppc64el
341s   Re-Instated r-cran-dbplyr:ppc64el
341s   Re-Instated r-cran-data.table:ppc64el
341s   Re-Instated r-cran-dtplyr:ppc64el
341s   Re-Instated r-cran-ellipsis:ppc64el
341s   Re-Instated r-cran-forcats:ppc64el
341s   Re-Instated r-cran-gtable:ppc64el
341s   Re-Instated r-cran-isoband:ppc64el
341s   Re-Instated r-cran-mass:ppc64el
341s   Re-Instated r-cran-lattice:ppc64el
341s   Re-Instated r-cran-nlme:ppc64el
341s   Re-Instated r-cran-matrix:ppc64el
341s   Re-Instated r-cran-mgcv:ppc64el
341s   Re-Instated r-cran-farver:ppc64el
341s   Re-Instated r-cran-labeling:ppc64el
341s   Re-Instated r-cran-colorspace:ppc64el
341s   Re-Instated r-cran-munsell:ppc64el
341s   Re-Instated r-cran-rcolorbrewer:ppc64el
341s   Re-Instated r-cran-viridislite:ppc64el
341s   Re-Instated r-cran-scales:ppc64el
341s   Re-Instated r-cran-ggplot2:ppc64el
341s   Re-Instated r-cran-fs:ppc64el
341s   Re-Instated r-cran-curl:ppc64el
341s   Re-Instated r-cran-jsonlite:ppc64el
341s   Re-Instated r-cran-mime:ppc64el
341s   Re-Instated r-cran-sys:ppc64el
341s   Re-Instated r-cran-askpass:ppc64el
341s   Re-Instated r-cran-openssl:ppc64el
341s   Re-Instated r-cran-httr:ppc64el
341s   Re-Instated r-cran-rappdirs:ppc64el
341s   Re-Instated r-cran-gargle:ppc64el
341s   Re-Instated r-cran-uuid:ppc64el
341s   Re-Instated r-cran-googledrive:ppc64el
341s   Re-Instated r-cran-rematch:ppc64el
341s   Re-Instated r-cran-cellranger:ppc64el
341s   Re-Instated r-cran-ids:ppc64el
341s   Re-Instated r-cran-rematch2:ppc64el
341s   Re-Instated r-cran-googlesheets4:ppc64el
341s   Re-Instated r-cran-hms:ppc64el
341s   Re-Instated r-cran-clipr:ppc64el
341s   Re-Instated r-cran-crayon:ppc64el
341s   Re-Instated r-cran-bit:ppc64el
341s   Re-Instated r-cran-bit64:ppc64el
341s   Re-Instated r-cran-tzdb:ppc64el
341s   Re-Instated r-cran-prettyunits:ppc64el
341s   Re-Instated r-cran-progress:ppc64el
341s   Re-Instated r-cran-vroom:ppc64el
341s   Re-Instated r-cran-littler:ppc64el
341s   Re-Instated littler:ppc64el
341s   Re-Instated r-cran-pkgkitten:ppc64el
341s   Re-Instated r-cran-rcpp:ppc64el
341s   Re-Instated r-cran-readr:ppc64el
341s   Re-Instated r-cran-haven:ppc64el
341s   Re-Instated r-cran-timechange:ppc64el
341s   Re-Instated r-cran-lubridate:ppc64el
341s   Re-Instated r-cran-modelr:ppc64el
341s   Re-Instated r-cran-systemfonts:ppc64el
341s   Re-Instated r-cran-textshaping:ppc64el
341s   Re-Instated r-cran-ragg:ppc64el
341s   Re-Instated r-cran-readxl:ppc64el
341s   Re-Instated r-cran-ps:ppc64el
341s   Re-Instated r-cran-processx:ppc64el
341s   Re-Instated r-cran-callr:ppc64el
341s   Re-Instated r-cran-evaluate:ppc64el
341s   Re-Instated r-cran-xfun:ppc64el
341s   Re-Instated libjs-highlight.js:ppc64el
341s   Re-Instated libjs-jquery:ppc64el
341s   Re-Instated r-cran-highr:ppc64el
341s   Re-Instated r-cran-yaml:ppc64el
341s   Re-Instated fonts-mathjax:ppc64el
341s   Re-Instated libjs-mathjax:ppc64el
341s   Re-Instated fonts-glyphicons-halflings:ppc64el
341s   Re-Instated libjs-bootstrap:ppc64el
341s   Re-Instated libjs-jquery-datatables:ppc64el
341s   Re-Instated node-normalize.css:ppc64el
341s   Re-Instated r-cran-knitr:ppc64el
341s   Re-Instated r-cran-base64enc:ppc64el
341s   Re-Instated r-cran-digest:ppc64el
341s   Re-Instated r-cran-htmltools:ppc64el
341s   Re-Instated r-cran-jquerylib:ppc64el
341s   Re-Instated r-cran-sass:ppc64el
341s   Re-Instated node-bootstrap-sass:ppc64el
341s   Re-Instated javascript-common:ppc64el
341s   Re-Instated libjs-popper.js:ppc64el
341s   Re-Instated libjs-bootstrap4:ppc64el
341s   Re-Instated r-cran-bslib:ppc64el
341s   Re-Instated r-cran-fontawesome:ppc64el
341s   Re-Instated r-cran-tinytex:ppc64el
341s   Re-Instated libjs-jquery-ui:ppc64el
341s   Re-Instated libjs-modernizr:ppc64el
341s   Re-Instated libjs-prettify:ppc64el
341s   Re-Instated fonts-font-awesome:ppc64el
341s   Re-Instated pandoc-data:ppc64el
341s   Re-Instated liblua5.4-0:ppc64el
341s   Re-Instated pandoc:ppc64el
341s   Re-Instated r-cran-later:ppc64el
341s   Re-Instated r-cran-promises:ppc64el
341s   Re-Instated r-cran-httpuv:ppc64el
341s   Re-Instated r-cran-xtable:ppc64el
341s   Re-Instated r-cran-sourcetools:ppc64el
341s   Re-Instated r-cran-commonmark:ppc64el
341s     Reinst Failed early because of r-cran-cachem:ppc64el
341s     Reinst Failed because of r-cran-shiny:ppc64el
341s     Reinst Failed because of r-cran-rmarkdown:ppc64el
341s     Reinst Failed because of r-cran-reprex:ppc64el
341s Broken autopkgtest-satdep:ppc64el Depends on libpicard-java:ppc64el < none | 3.1.1+dfsg-1 @un uH >
341s   Considering libpicard-java:ppc64el 1 as a solution to autopkgtest-satdep:ppc64el 9998
341s   Re-Instated libapache-pom-java:ppc64el
341s   Re-Instated libcommons-parent-java:ppc64el
341s   Re-Instated libcommons-codec-java:ppc64el
341s   Re-Instated libcommons-io-java:ppc64el
341s   Re-Instated libcommons-compress-java:ppc64el
341s   Re-Instated libcommons-logging-java:ppc64el
341s   Re-Instated libcommons-jexl2-java:ppc64el
341s   Re-Instated libmjson-java:ppc64el
341s     Reinst Failed early because of libngs-java:ppc64el
341s     Reinst Failed because of libhtsjdk-java:ppc64el
341s Broken autopkgtest-satdep:ppc64el Depends on salmon:ppc64el < none @un H >
341s Broken autopkgtest-satdep:ppc64el Depends on r-bioc-edger:ppc64el < none | 4.2.1+dfsg-1 @un uH >
341s   Considering r-bioc-edger:ppc64el 1 as a solution to autopkgtest-satdep:ppc64el 9998
341s   Re-Instated r-bioc-biocgenerics:ppc64el
341s   Re-Instated r-cran-statmod:ppc64el
341s   Re-Instated r-bioc-limma:ppc64el
341s   Re-Instated r-cran-locfit:ppc64el
341s   Re-Instated r-bioc-edger:ppc64el
341s Broken autopkgtest-satdep:ppc64el Depends on r-bioc-deseq2:ppc64el < none | 1.44.0+dfsg-1 @un uH >
341s   Considering r-bioc-deseq2:ppc64el 1 as a solution to autopkgtest-satdep:ppc64el 9998
341s   Re-Instated r-bioc-s4vectors:ppc64el
341s   Re-Instated r-bioc-iranges:ppc64el
341s   Re-Instated r-bioc-ucsc.utils:ppc64el
341s   Re-Instated r-bioc-genomeinfodbdata:ppc64el
341s   Re-Instated r-bioc-genomeinfodb:ppc64el
341s   Re-Instated zlib1g-dev:ppc64el
341s   Re-Instated r-bioc-zlibbioc:ppc64el
341s   Re-Instated r-bioc-xvector:ppc64el
341s   Re-Instated r-bioc-genomicranges:ppc64el
341s   Re-Instated r-cran-matrixstats:ppc64el
341s   Re-Instated r-bioc-matrixgenerics:ppc64el
341s   Re-Instated r-bioc-biobase:ppc64el
341s   Re-Instated r-cran-abind:ppc64el
341s   Re-Instated r-bioc-s4arrays:ppc64el
341s   Re-Instated r-bioc-sparsearray:ppc64el
341s   Re-Instated r-bioc-delayedarray:ppc64el
341s   Re-Instated r-bioc-summarizedexperiment:ppc64el
341s   Re-Instated r-cran-formatr:ppc64el
341s   Re-Instated r-cran-lambda.r:ppc64el
341s   Re-Instated r-cran-futile.options:ppc64el
341s   Re-Instated r-cran-futile.logger:ppc64el
341s   Re-Instated r-cran-snow:ppc64el
341s   Re-Instated r-cran-codetools:ppc64el
341s   Re-Instated libitm1:ppc64el
341s   Re-Instated libasan8:ppc64el
341s   Re-Instated liblsan0:ppc64el
341s   Re-Instated libtsan2:ppc64el
341s   Re-Instated libubsan1:ppc64el
341s   Re-Instated libquadmath0:ppc64el
341s   Re-Instated libgcc-14-dev:ppc64el
341s   Re-Instated libstdc++-14-dev:ppc64el
341s   Re-Instated libboost1.83-dev:ppc64el
341s   Re-Instated libboost-dev:ppc64el
341s   Re-Instated r-cran-bh:ppc64el
341s   Re-Instated r-bioc-biocparallel:ppc64el
341s   Re-Instated r-cran-rcpparmadillo:ppc64el
341s   Re-Instated r-bioc-deseq2:ppc64el
341s Broken autopkgtest-satdep:ppc64el Depends on r-cran-cluster:ppc64el < none | 2.1.6-1build1 @un uH >
341s   Considering r-cran-cluster:ppc64el 1 as a solution to autopkgtest-satdep:ppc64el 9998
341s   Re-Instated r-cran-cluster:ppc64el
341s Broken autopkgtest-satdep:ppc64el Depends on r-bioc-qvalue:ppc64el < none | 2.36.0-1 @un uH >
341s   Considering r-bioc-qvalue:ppc64el 1 as a solution to autopkgtest-satdep:ppc64el 9998
341s   Re-Instated r-cran-plyr:ppc64el
341s   Re-Instated r-cran-reshape2:ppc64el
341s   Re-Instated r-bioc-qvalue:ppc64el
341s Broken autopkgtest-satdep:ppc64el Depends on r-cran-fastcluster:ppc64el < none | 1.2.6-1build1 @un uH >
341s   Considering r-cran-fastcluster:ppc64el 1 as a solution to autopkgtest-satdep:ppc64el 9998
341s   Re-Instated r-cran-fastcluster:ppc64el
341s Broken autopkgtest-satdep:ppc64el Depends on r-bioc-goseq:ppc64el < none | 1.56.0-1 @un uH >
341s   Considering r-bioc-goseq:ppc64el 1 as a solution to autopkgtest-satdep:ppc64el 9998
341s   Re-Instated r-cran-biasedurn:ppc64el
341s   Re-Instated r-cran-xml:ppc64el
341s   Re-Instated r-bioc-biostrings:ppc64el
341s   Re-Instated r-cran-bitops:ppc64el
341s   Re-Instated r-bioc-rhtslib:ppc64el
341s   Re-Instated r-bioc-rsamtools:ppc64el
341s   Re-Instated r-bioc-genomicalignments:ppc64el
341s   Re-Instated r-bioc-biocio:ppc64el
341s   Re-Instated r-cran-rcurl:ppc64el
341s   Re-Instated r-cran-rjson:ppc64el
341s   Re-Instated r-cran-restfulr:ppc64el
341s   Re-Instated r-bioc-rtracklayer:ppc64el
341s   Re-Instated r-cran-plogr:ppc64el
341s   Re-Instated r-cran-rsqlite:ppc64el
341s   Re-Instated r-cran-png:ppc64el
341s   Re-Instated r-bioc-keggrest:ppc64el
341s   Re-Instated r-bioc-annotationdbi:ppc64el
341s     Reinst Failed because of r-cran-rmarkdown:ppc64el
341s     Reinst Failed because of r-cran-bookdown:ppc64el
341s     Reinst Failed because of r-bioc-biocstyle:ppc64el
341s     Reinst Failed because of r-bioc-genomicfeatures:ppc64el
341s     Reinst Failed because of r-bioc-genelendatabase:ppc64el
341s Broken autopkgtest-satdep:ppc64el Depends on r-cran-argparse:ppc64el < none | 2.2.3+dfsg-1 @un uH >
341s   Considering r-cran-argparse:ppc64el 1 as a solution to autopkgtest-satdep:ppc64el 9998
341s   Re-Instated r-cran-findpython:ppc64el
341s   Re-Instated r-cran-argparse:ppc64el
341s Broken autopkgtest-satdep:ppc64el Depends on r-cran-goplot:ppc64el < none | 1.0.2-2 @un uH >
341s   Considering r-cran-goplot:ppc64el 1 as a solution to autopkgtest-satdep:ppc64el 9998
341s   Re-Instated r-cran-ggdendro:ppc64el
341s   Re-Instated r-cran-gridextra:ppc64el
341s   Re-Instated r-cran-goplot:ppc64el
341s Broken autopkgtest-satdep:ppc64el Depends on r-cran-kernsmooth:ppc64el < none | 2.23-24-1 @un uH >
341s   Considering r-cran-kernsmooth:ppc64el 1 as a solution to autopkgtest-satdep:ppc64el 9998
341s   Re-Instated r-cran-kernsmooth:ppc64el
341s Broken autopkgtest-satdep:ppc64el Depends on hisat2:ppc64el < none | 2.2.1-5 @un uH >
341s   Considering hisat2:ppc64el 1 as a solution to autopkgtest-satdep:ppc64el 9998
341s   Re-Instated hisat2:ppc64el
341s Broken autopkgtest-satdep:ppc64el Depends on python3-hisat2:ppc64el < none | 2.2.1-5 @un uH >
341s   Considering python3-hisat2:ppc64el 1 as a solution to autopkgtest-satdep:ppc64el 9998
341s   Re-Instated python3-hisat2:ppc64el
341s Broken autopkgtest-satdep:ppc64el Depends on r-bioc-dexseq:ppc64el < none | 1.50.0+dfsg-1 @un uH >
341s   Considering r-bioc-dexseq:ppc64el 1 as a solution to autopkgtest-satdep:ppc64el 9998
341s     Reinst Failed early because of r-cran-curl:ppc64el
341s     Reinst Failed because of r-cran-httr2:ppc64el
341s     Reinst Failed because of r-bioc-biomart:ppc64el
341s Done
341s Some packages could not be installed. This may mean that you have
341s requested an impossible situation or if you are using the unstable
341s distribution that some required packages have not yet been created
341s or been moved out of Incoming.
341s The following information may help to resolve the situation:
341s 
341s The following packages have unmet dependencies:
341s  autopkgtest-satdep : Depends: r-cran-tidyverse but it is not going to be installed
341s                       Depends: libpicard-java but it is not going to be installed
341s                       Depends: salmon but it is not installable
341s                       Depends: r-bioc-goseq but it is not going to be installed
341s                       Depends: r-bioc-dexseq but it is not going to be installed
341s E: Unable to correct problems, you have held broken packages.
341s autopkgtest: WARNING: Test dependencies are unsatisfiable - calling apt install on test deps directly for further data about failing dependencies in test logs
341s Reading package lists...
341s Building dependency tree...
341s Reading state information...
341s Package salmon is not available, but is referred to by another package.
341s This may mean that the package is missing, has been obsoleted, or
341s is only available from another source
341s 
341s E: Package 'salmon' has no installation candidate
341s run-tests            SKIP installation fails and skip-not-installable set
341s autopkgtest [23:20:52]: @@@@@@@@@@@@@@@@@@@@ summary
341s run-tests            SKIP installation fails and skip-not-installable set
346s nova [W] Using flock in prodstack6-ppc64el
346s flock: timeout while waiting to get lock
346s Creating nova instance adt-plucky-ppc64el-trinityrnaseq-20241101-231511-juju-7f2275-prod-proposed-migration-environment-15-6bbdf971-a4c4-470e-ac16-601dd3018c70 from image adt/ubuntu-plucky-ppc64el-server-20241101.img (UUID d479b61b-bfab-4ebe-8e06-591f77402620)...