0s autopkgtest [13:24:23]: starting date and time: 2024-11-01 13:24:23+0000
  0s autopkgtest [13:24:23]: git checkout: 6f3be7a8 Fix armhf LXD image generation for plucky
  0s autopkgtest [13:24:23]: host juju-7f2275-prod-proposed-migration-environment-15; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work._j8_vop8/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:liburi-perl --apt-upgrade trinityrnaseq --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=liburi-perl/5.30-1 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest-ppc64el --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-15@bos03-ppc64el-5.secgroup --name adt-plucky-ppc64el-trinityrnaseq-20241101-132423-juju-7f2275-prod-proposed-migration-environment-15-626e0f4e-d0ea-43d4-b36c-500b06d57ff5 --image adt/ubuntu-plucky-ppc64el-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-15 --net-id=net_prod-proposed-migration-ppc64el -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,keyserver.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/
112s autopkgtest [13:26:15]: testbed dpkg architecture: ppc64el
113s autopkgtest [13:26:16]: testbed apt version: 2.9.8
113s autopkgtest [13:26:16]: @@@@@@@@@@@@@@@@@@@@ test bed setup
114s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease [73.9 kB]
114s Get:2 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse Sources [51.2 kB]
114s Get:3 http://ftpmaster.internal/ubuntu plucky-proposed/restricted Sources [7016 B]
114s Get:4 http://ftpmaster.internal/ubuntu plucky-proposed/main Sources [196 kB]
114s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/universe Sources [3097 kB]
114s Get:6 http://ftpmaster.internal/ubuntu plucky-proposed/main ppc64el Packages [230 kB]
114s Get:7 http://ftpmaster.internal/ubuntu plucky-proposed/universe ppc64el Packages [1739 kB]
114s Get:8 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse ppc64el Packages [25.8 kB]
115s Fetched 5419 kB in 2s (3358 kB/s)
115s Reading package lists...
123s Reading package lists...
123s Hit:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease
123s Building dependency tree...
123s Reading state information...
123s Calculating upgrade...
123s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
123s Reading package lists...
123s Building dependency tree...
123s Reading state information...
123s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
123s Reading package lists...
123s Building dependency tree...
123s Reading state information...
123s Calculating upgrade...
123s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
123s Reading package lists...
123s Building dependency tree...
123s Reading state information...
123s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
123s Hit:2 http://ftpmaster.internal/ubuntu plucky InRelease
123s Hit:3 http://ftpmaster.internal/ubuntu plucky-updates InRelease
123s Hit:4 http://ftpmaster.internal/ubuntu plucky-security InRelease
123s Reading package lists...
125s autopkgtest [13:26:28]: testbed running kernel: Linux 6.11.0-8-generic #8-Ubuntu SMP Mon Sep 16 13:49:23 UTC 2024
126s autopkgtest [13:26:29]: @@@@@@@@@@@@@@@@@@@@ apt-source trinityrnaseq
140s Get:1 http://ftpmaster.internal/ubuntu plucky/universe trinityrnaseq 2.15.1+dfsg-5build1 (dsc) [2629 B]
140s Get:2 http://ftpmaster.internal/ubuntu plucky/universe trinityrnaseq 2.15.1+dfsg-5build1 (tar) [307 MB]
140s Get:3 http://ftpmaster.internal/ubuntu plucky/universe trinityrnaseq 2.15.1+dfsg-5build1 (diff) [39.4 kB]
140s gpgv: Signature made Sun Apr 14 18:57:26 2024 UTC
140s gpgv:                using RSA key AC0A4FF12611B6FCCF01C111393587D97D86500B
140s gpgv: Can't check signature: No public key
140s dpkg-source: warning: cannot verify inline signature for ./trinityrnaseq_2.15.1+dfsg-5build1.dsc: no acceptable signature found
149s autopkgtest [13:26:52]: testing package trinityrnaseq version 2.15.1+dfsg-5build1
149s autopkgtest [13:26:52]: build not needed
169s autopkgtest [13:27:12]: test run-tests: preparing testbed
173s Reading package lists...
173s Building dependency tree...
173s Reading state information...
173s Starting pkgProblemResolver with broken count: 1
173s Starting 2 pkgProblemResolver with broken count: 1
173s Investigating (0) autopkgtest-satdep:ppc64el < none -> 0 @un puN Ib >
173s Broken autopkgtest-satdep:ppc64el Depends on trinityrnaseq:ppc64el < none | 2.15.1+dfsg-5build1 @un uH >
173s   Considering trinityrnaseq:ppc64el 1 as a solution to autopkgtest-satdep:ppc64el 9998
173s   Re-Instated libgomp1:ppc64el
173s   Re-Instated libdeflate0:ppc64el
173s   Re-Instated libhtscodecs2:ppc64el
173s   Re-Instated libhts3t64:ppc64el
173s   Re-Instated ca-certificates-java:ppc64el
173s   Re-Instated java-common:ppc64el
173s   Re-Instated liblcms2-2:ppc64el
173s   Re-Instated libjpeg-turbo8:ppc64el
173s   Re-Instated libjpeg8:ppc64el
173s   Re-Instated libpcsclite1:ppc64el
173s   Re-Instated openjdk-21-jre-headless:ppc64el
173s   Re-Instated default-jre-headless:ppc64el
173s   Re-Instated jaligner:ppc64el
173s   Re-Instated libgetopt-java:ppc64el
173s   Re-Instated libatinject-jsr330-api-java:ppc64el
173s   Re-Instated liberror-prone-java:ppc64el
173s   Re-Instated libjsr305-java:ppc64el
173s   Re-Instated libguava-java:ppc64el
173s   Re-Instated libjung-free-java:ppc64el
173s   Re-Instated bowtie:ppc64el
173s   Re-Instated bowtie2:ppc64el
173s   Re-Instated libencode-locale-perl:ppc64el
173s   Re-Instated libtimedate-perl:ppc64el
173s   Re-Instated libhttp-date-perl:ppc64el
173s   Re-Instated libfile-listing-perl:ppc64el
173s   Re-Instated libhtml-tagset-perl:ppc64el
173s   Re-Instated liburi-perl:ppc64el
173s   Re-Instated libhtml-parser-perl:ppc64el
173s   Re-Instated libhtml-tree-perl:ppc64el
173s   Re-Instated libclone-perl:ppc64el
173s   Re-Instated libio-html-perl:ppc64el
173s   Re-Instated liblwp-mediatypes-perl:ppc64el
173s   Re-Instated libhttp-message-perl:ppc64el
173s   Re-Instated libhttp-cookies-perl:ppc64el
173s   Re-Instated libhttp-negotiate-perl:ppc64el
173s   Re-Instated perl-openssl-defaults:ppc64el
173s   Re-Instated libnet-ssleay-perl:ppc64el
173s   Re-Instated libio-socket-ssl-perl:ppc64el
173s   Re-Instated libnet-http-perl:ppc64el
173s   Re-Instated liblwp-protocol-https-perl:ppc64el
173s   Re-Instated libtry-tiny-perl:ppc64el
173s   Re-Instated libwww-robotrules-perl:ppc64el
173s   Re-Instated libwww-perl:ppc64el
173s   Re-Instated samtools:ppc64el
173s   Re-Instated libjellyfish-2.0-2:ppc64el
173s   Re-Instated jellyfish:ppc64el
173s   Re-Instated zip:ppc64el
173s   Re-Instated unzip:ppc64el
173s   Re-Instated libpaper1:ppc64el
173s   Re-Instated libpaper-utils:ppc64el
173s   Re-Instated xdg-utils:ppc64el
173s   Re-Instated libblas3:ppc64el
173s   Re-Instated fonts-dejavu-mono:ppc64el
173s   Re-Instated fonts-dejavu-core:ppc64el
173s   Re-Instated fontconfig-config:ppc64el
173s   Re-Instated libfontconfig1:ppc64el
173s   Re-Instated libpixman-1-0:ppc64el
173s   Re-Instated libxcb-render0:ppc64el
173s   Re-Instated libxcb-shm0:ppc64el
173s   Re-Instated libxrender1:ppc64el
173s   Re-Instated libcairo2:ppc64el
173s   Re-Instated libgfortran5:ppc64el
173s   Re-Instated liblapack3:ppc64el
173s   Re-Instated fontconfig:ppc64el
173s   Re-Instated libgraphite2-3:ppc64el
173s   Re-Instated libharfbuzz0b:ppc64el
173s   Re-Instated libthai-data:ppc64el
173s   Re-Instated libdatrie1:ppc64el
173s   Re-Instated libthai0:ppc64el
173s   Re-Instated libpango-1.0-0:ppc64el
173s   Re-Instated libpangoft2-1.0-0:ppc64el
173s   Re-Instated libpangocairo-1.0-0:ppc64el
173s   Re-Instated libtcl8.6:ppc64el
173s   Re-Instated libjbig0:ppc64el
173s   Re-Instated liblerc4:ppc64el
173s   Re-Instated libsharpyuv0:ppc64el
173s   Re-Instated libwebp7:ppc64el
173s   Re-Instated libtiff6:ppc64el
173s   Re-Instated libxft2:ppc64el
173s   Re-Instated x11-common:ppc64el
173s   Re-Instated libxss1:ppc64el
173s   Re-Instated libtk8.6:ppc64el
173s   Re-Instated libice6:ppc64el
173s   Re-Instated libsm6:ppc64el
173s   Re-Instated libxt6t64:ppc64el
173s   Re-Instated r-base-core:ppc64el
173s   Re-Instated rsem:ppc64el
173s   Re-Instated libbamtools2.5.2:ppc64el
173s   Re-Instated libboost-filesystem1.83.0:ppc64el
173s   Re-Instated libboost-program-options1.83.0:ppc64el
173s   Re-Instated libboost-thread1.83.0:ppc64el
173s   Re-Instated libprotobuf32t64:ppc64el
173s   Re-Instated berkeley-express:ppc64el
173s   Re-Instated libjbzip2-java:ppc64el
173s   Re-Instated libgdk-pixbuf2.0-common:ppc64el
173s   Re-Instated libgdk-pixbuf-2.0-0:ppc64el
173s   Re-Instated gtk-update-icon-cache:ppc64el
173s   Re-Instated hicolor-icon-theme:ppc64el
173s   Re-Instated humanity-icon-theme:ppc64el
173s   Re-Instated ubuntu-mono:ppc64el
173s   Re-Instated adwaita-icon-theme:ppc64el
173s   Re-Instated at-spi2-common:ppc64el
173s   Re-Instated libatk1.0-0t64:ppc64el
173s   Re-Instated libxi6:ppc64el
173s   Re-Instated libatspi2.0-0t64:ppc64el
173s   Re-Instated libatk-bridge2.0-0t64:ppc64el
173s   Re-Instated libcairo-gobject2:ppc64el
173s   Re-Instated libcolord2:ppc64el
173s   Re-Instated libavahi-common-data:ppc64el
173s   Re-Instated libavahi-common3:ppc64el
173s   Re-Instated libavahi-client3:ppc64el
173s   Re-Instated libcups2t64:ppc64el
173s   Re-Instated libepoxy0:ppc64el
173s   Re-Instated libwayland-client0:ppc64el
173s   Re-Instated libwayland-cursor0:ppc64el
173s   Re-Instated libwayland-egl1:ppc64el
173s   Re-Instated libxcomposite1:ppc64el
173s   Re-Instated libxfixes3:ppc64el
173s   Re-Instated libxcursor1:ppc64el
173s   Re-Instated libxdamage1:ppc64el
173s   Re-Instated libxinerama1:ppc64el
173s   Re-Instated libxrandr2:ppc64el
173s   Re-Instated libdconf1:ppc64el
173s   Re-Instated dconf-service:ppc64el
173s   Re-Instated dconf-gsettings-backend:ppc64el
173s   Re-Instated libgtk-3-common:ppc64el
173s   Re-Instated libgtk-3-0t64:ppc64el
173s   Re-Instated libglvnd0:ppc64el
173s   Re-Instated libglapi-mesa:ppc64el
173s   Re-Instated libx11-xcb1:ppc64el
173s   Re-Instated libxcb-dri2-0:ppc64el
173s   Re-Instated libxcb-dri3-0:ppc64el
173s   Re-Instated libxcb-glx0:ppc64el
173s   Re-Instated libxcb-present0:ppc64el
173s   Re-Instated libxcb-randr0:ppc64el
173s   Re-Instated libxcb-sync1:ppc64el
173s   Re-Instated libxcb-xfixes0:ppc64el
173s   Re-Instated libxshmfence1:ppc64el
173s   Re-Instated libxxf86vm1:ppc64el
173s   Re-Instated libdrm-amdgpu1:ppc64el
173s   Re-Instated libdrm-radeon1:ppc64el
173s   Re-Instated mesa-libgallium:ppc64el
173s   Re-Instated libvulkan1:ppc64el
173s   Re-Instated libwayland-server0:ppc64el
173s   Re-Instated libgbm1:ppc64el
173s   Re-Instated libgl1-mesa-dri:ppc64el
173s   Re-Instated libglx-mesa0:ppc64el
173s   Re-Instated libglx0:ppc64el
173s   Re-Instated libgl1:ppc64el
173s   Re-Instated libasound2-data:ppc64el
173s   Re-Instated libasound2t64:ppc64el
173s   Re-Instated libgif7:ppc64el
173s   Re-Instated libxtst6:ppc64el
173s   Re-Instated openjdk-21-jre:ppc64el
173s   Re-Instated default-jre:ppc64el
173s   Re-Instated trimmomatic:ppc64el
173s   Re-Instated parafly:ppc64el
173s   Re-Instated ncbi-data:ppc64el
173s   Re-Instated libmbedcrypto7t64:ppc64el
173s   Re-Instated libmbedx509-1t64:ppc64el
173s   Re-Instated libmbedtls14t64:ppc64el
173s   Re-Instated ncbi-blast+:ppc64el
173s   Re-Instated python3-numpy:ppc64el
173s   Re-Instated python3-pysam:ppc64el
173s   Re-Instated python3-htseq:ppc64el
173s   Re-Instated subread:ppc64el
173s   Re-Instated kallisto:ppc64el
173s   Re-Instated trinityrnaseq:ppc64el
173s Broken autopkgtest-satdep:ppc64el Depends on trinityrnaseq-examples:ppc64el < none | 2.15.1+dfsg-5build1 @un uH >
173s   Considering trinityrnaseq-examples:ppc64el 1 as a solution to autopkgtest-satdep:ppc64el 9998
173s   Re-Instated trinityrnaseq-examples:ppc64el
173s Broken autopkgtest-satdep:ppc64el Depends on r-cran-tidyverse:ppc64el < none | 2.0.0+dfsg-1 @un uH >
173s   Considering r-cran-tidyverse:ppc64el 1 as a solution to autopkgtest-satdep:ppc64el 9998
173s   Re-Instated r-cran-backports:ppc64el
173s   Re-Instated r-cran-cli:ppc64el
173s   Re-Instated r-cran-generics:ppc64el
173s   Re-Instated r-cran-glue:ppc64el
173s   Re-Instated r-cran-rlang:ppc64el
173s   Re-Instated r-cran-lifecycle:ppc64el
173s   Re-Instated r-cran-magrittr:ppc64el
173s   Re-Instated r-cran-fansi:ppc64el
173s   Re-Instated r-cran-utf8:ppc64el
173s   Re-Instated r-cran-vctrs:ppc64el
173s   Re-Instated r-cran-pillar:ppc64el
173s   Re-Instated r-cran-r6:ppc64el
173s   Re-Instated r-cran-pkgconfig:ppc64el
173s   Re-Instated r-cran-tibble:ppc64el
173s   Re-Instated r-cran-withr:ppc64el
173s   Re-Instated r-cran-tidyselect:ppc64el
173s   Re-Instated r-cran-dplyr:ppc64el
173s   Re-Instated r-cran-purrr:ppc64el
173s   Re-Instated r-cran-stringi:ppc64el
173s   Re-Instated r-cran-stringr:ppc64el
173s   Re-Instated r-cran-cpp11:ppc64el
173s   Re-Instated r-cran-tidyr:ppc64el
173s   Re-Instated r-cran-broom:ppc64el
173s   Re-Instated r-cran-fastmap:ppc64el
173s   Re-Instated r-cran-cachem:ppc64el
173s   Re-Instated r-cran-memoise:ppc64el
173s   Re-Instated r-cran-conflicted:ppc64el
173s   Re-Instated r-cran-blob:ppc64el
173s   Re-Instated r-cran-dbi:ppc64el
173s   Re-Instated r-cran-dbplyr:ppc64el
173s   Re-Instated r-cran-data.table:ppc64el
173s   Re-Instated r-cran-dtplyr:ppc64el
173s   Re-Instated r-cran-ellipsis:ppc64el
173s   Re-Instated r-cran-forcats:ppc64el
173s   Re-Instated r-cran-gtable:ppc64el
173s   Re-Instated r-cran-isoband:ppc64el
173s   Re-Instated r-cran-mass:ppc64el
173s   Re-Instated r-cran-lattice:ppc64el
173s   Re-Instated r-cran-nlme:ppc64el
173s   Re-Instated r-cran-matrix:ppc64el
173s   Re-Instated r-cran-mgcv:ppc64el
173s   Re-Instated r-cran-farver:ppc64el
173s   Re-Instated r-cran-labeling:ppc64el
173s   Re-Instated r-cran-colorspace:ppc64el
173s   Re-Instated r-cran-munsell:ppc64el
173s   Re-Instated r-cran-rcolorbrewer:ppc64el
173s   Re-Instated r-cran-viridislite:ppc64el
173s   Re-Instated r-cran-scales:ppc64el
173s   Re-Instated r-cran-ggplot2:ppc64el
173s   Re-Instated r-cran-fs:ppc64el
173s   Re-Instated r-cran-curl:ppc64el
173s   Re-Instated r-cran-jsonlite:ppc64el
173s   Re-Instated r-cran-mime:ppc64el
173s   Re-Instated r-cran-sys:ppc64el
173s   Re-Instated r-cran-askpass:ppc64el
173s   Re-Instated r-cran-openssl:ppc64el
173s   Re-Instated r-cran-httr:ppc64el
173s   Re-Instated r-cran-rappdirs:ppc64el
173s   Re-Instated r-cran-gargle:ppc64el
173s   Re-Instated r-cran-uuid:ppc64el
173s   Re-Instated r-cran-googledrive:ppc64el
173s   Re-Instated r-cran-rematch:ppc64el
173s   Re-Instated r-cran-cellranger:ppc64el
173s   Re-Instated r-cran-ids:ppc64el
173s   Re-Instated r-cran-rematch2:ppc64el
173s   Re-Instated r-cran-googlesheets4:ppc64el
173s   Re-Instated r-cran-hms:ppc64el
173s   Re-Instated r-cran-clipr:ppc64el
173s   Re-Instated r-cran-crayon:ppc64el
173s   Re-Instated r-cran-bit:ppc64el
173s   Re-Instated r-cran-bit64:ppc64el
173s   Re-Instated r-cran-tzdb:ppc64el
173s   Re-Instated r-cran-prettyunits:ppc64el
173s   Re-Instated r-cran-progress:ppc64el
173s   Re-Instated r-cran-vroom:ppc64el
173s   Re-Instated r-cran-littler:ppc64el
173s   Re-Instated littler:ppc64el
173s   Re-Instated r-cran-pkgkitten:ppc64el
173s   Re-Instated r-cran-rcpp:ppc64el
173s   Re-Instated r-cran-readr:ppc64el
173s   Re-Instated r-cran-haven:ppc64el
173s   Re-Instated r-cran-timechange:ppc64el
173s   Re-Instated r-cran-lubridate:ppc64el
173s   Re-Instated r-cran-modelr:ppc64el
173s   Re-Instated r-cran-systemfonts:ppc64el
173s   Re-Instated r-cran-textshaping:ppc64el
173s   Re-Instated r-cran-ragg:ppc64el
173s   Re-Instated r-cran-readxl:ppc64el
173s   Re-Instated r-cran-ps:ppc64el
173s   Re-Instated r-cran-processx:ppc64el
173s   Re-Instated r-cran-callr:ppc64el
173s   Re-Instated r-cran-evaluate:ppc64el
173s   Re-Instated r-cran-xfun:ppc64el
173s   Re-Instated libjs-highlight.js:ppc64el
173s   Re-Instated libjs-jquery:ppc64el
173s   Re-Instated r-cran-highr:ppc64el
173s   Re-Instated r-cran-yaml:ppc64el
173s   Re-Instated fonts-mathjax:ppc64el
173s   Re-Instated libjs-mathjax:ppc64el
173s   Re-Instated fonts-glyphicons-halflings:ppc64el
173s   Re-Instated libjs-bootstrap:ppc64el
173s   Re-Instated libjs-jquery-datatables:ppc64el
173s   Re-Instated node-normalize.css:ppc64el
173s   Re-Instated r-cran-knitr:ppc64el
173s   Re-Instated r-cran-base64enc:ppc64el
173s   Re-Instated r-cran-digest:ppc64el
173s   Re-Instated r-cran-htmltools:ppc64el
173s   Re-Instated r-cran-jquerylib:ppc64el
173s   Re-Instated r-cran-sass:ppc64el
173s   Re-Instated node-bootstrap-sass:ppc64el
173s   Re-Instated javascript-common:ppc64el
173s   Re-Instated libjs-popper.js:ppc64el
173s   Re-Instated libjs-bootstrap4:ppc64el
173s   Re-Instated r-cran-bslib:ppc64el
173s   Re-Instated r-cran-fontawesome:ppc64el
173s   Re-Instated r-cran-tinytex:ppc64el
173s   Re-Instated libjs-jquery-ui:ppc64el
173s   Re-Instated libjs-modernizr:ppc64el
173s   Re-Instated libjs-prettify:ppc64el
173s   Re-Instated fonts-font-awesome:ppc64el
173s   Re-Instated pandoc-data:ppc64el
173s   Re-Instated liblua5.4-0:ppc64el
173s   Re-Instated pandoc:ppc64el
173s   Re-Instated r-cran-later:ppc64el
173s   Re-Instated r-cran-promises:ppc64el
173s   Re-Instated r-cran-httpuv:ppc64el
173s   Re-Instated r-cran-xtable:ppc64el
173s   Re-Instated r-cran-sourcetools:ppc64el
173s   Re-Instated r-cran-commonmark:ppc64el
173s   Re-Instated libjs-json:ppc64el
173s   Re-Instated libjs-es5-shim:ppc64el
173s   Re-Instated libjs-twitter-bootstrap-datepicker:ppc64el
173s   Re-Instated libjs-sifter.js:ppc64el
173s   Re-Instated libjs-microplugin.js:ppc64el
173s   Re-Instated libjs-jquery-selectize.js:ppc64el
173s   Re-Instated libjs-d3:ppc64el
173s   Re-Instated node-html5shiv:ppc64el
173s   Re-Instated r-cran-shiny:ppc64el
173s   Re-Instated r-cran-rmarkdown:ppc64el
173s   Re-Instated r-cran-rstudioapi:ppc64el
173s   Re-Instated r-cran-reprex:ppc64el
173s   Re-Instated r-cran-selectr:ppc64el
173s   Re-Instated r-cran-xml2:ppc64el
173s   Re-Instated r-cran-rvest:ppc64el
173s   Re-Instated r-cran-tidyverse:ppc64el
173s Broken autopkgtest-satdep:ppc64el Depends on libpicard-java:ppc64el < none | 3.1.1+dfsg-1 @un uH >
173s   Considering libpicard-java:ppc64el 1 as a solution to autopkgtest-satdep:ppc64el 9998
173s   Re-Instated libapache-pom-java:ppc64el
173s   Re-Instated libcommons-parent-java:ppc64el
173s   Re-Instated libcommons-compress-java:ppc64el
173s   Re-Instated libcommons-logging-java:ppc64el
173s   Re-Instated libcommons-jexl2-java:ppc64el
173s   Re-Instated libmjson-java:ppc64el
173s     Reinst Failed early because of libngs-java:ppc64el
173s     Reinst Failed because of libhtsjdk-java:ppc64el
173s Broken autopkgtest-satdep:ppc64el Depends on salmon:ppc64el < none @un H >
173s Broken autopkgtest-satdep:ppc64el Depends on r-bioc-edger:ppc64el < none | 4.2.1+dfsg-1 @un uH >
173s   Considering r-bioc-edger:ppc64el 1 as a solution to autopkgtest-satdep:ppc64el 9998
173s   Re-Instated r-bioc-biocgenerics:ppc64el
173s   Re-Instated r-cran-statmod:ppc64el
173s   Re-Instated r-bioc-limma:ppc64el
173s   Re-Instated r-cran-locfit:ppc64el
173s   Re-Instated r-bioc-edger:ppc64el
173s Broken autopkgtest-satdep:ppc64el Depends on r-bioc-deseq2:ppc64el < none | 1.44.0+dfsg-1 @un uH >
173s   Considering r-bioc-deseq2:ppc64el 1 as a solution to autopkgtest-satdep:ppc64el 9998
173s   Re-Instated r-bioc-s4vectors:ppc64el
173s   Re-Instated r-bioc-iranges:ppc64el
173s   Re-Instated r-bioc-ucsc.utils:ppc64el
173s   Re-Instated r-bioc-genomeinfodbdata:ppc64el
173s   Re-Instated r-bioc-genomeinfodb:ppc64el
173s   Re-Instated zlib1g-dev:ppc64el
173s   Re-Instated r-bioc-zlibbioc:ppc64el
173s   Re-Instated r-bioc-xvector:ppc64el
173s   Re-Instated r-bioc-genomicranges:ppc64el
173s   Re-Instated r-cran-matrixstats:ppc64el
173s   Re-Instated r-bioc-matrixgenerics:ppc64el
173s   Re-Instated r-bioc-biobase:ppc64el
173s   Re-Instated r-cran-abind:ppc64el
173s   Re-Instated r-bioc-s4arrays:ppc64el
173s   Re-Instated r-bioc-sparsearray:ppc64el
173s   Re-Instated r-bioc-delayedarray:ppc64el
173s   Re-Instated r-bioc-summarizedexperiment:ppc64el
173s   Re-Instated r-cran-formatr:ppc64el
173s   Re-Instated r-cran-lambda.r:ppc64el
173s   Re-Instated r-cran-futile.options:ppc64el
173s   Re-Instated r-cran-futile.logger:ppc64el
173s   Re-Instated r-cran-snow:ppc64el
173s   Re-Instated r-cran-codetools:ppc64el
173s   Re-Instated libitm1:ppc64el
173s   Re-Instated libasan8:ppc64el
173s   Re-Instated liblsan0:ppc64el
173s   Re-Instated libtsan2:ppc64el
173s   Re-Instated libubsan1:ppc64el
173s   Re-Instated libquadmath0:ppc64el
173s   Re-Instated libgcc-14-dev:ppc64el
173s   Re-Instated libstdc++-14-dev:ppc64el
173s   Re-Instated libboost1.83-dev:ppc64el
173s   Re-Instated libboost-dev:ppc64el
173s   Re-Instated r-cran-bh:ppc64el
173s   Re-Instated r-bioc-biocparallel:ppc64el
173s   Re-Instated r-cran-rcpparmadillo:ppc64el
173s   Re-Instated r-bioc-deseq2:ppc64el
173s Broken autopkgtest-satdep:ppc64el Depends on r-cran-cluster:ppc64el < none | 2.1.6-1build1 @un uH >
173s   Considering r-cran-cluster:ppc64el 1 as a solution to autopkgtest-satdep:ppc64el 9998
173s   Re-Instated r-cran-cluster:ppc64el
173s Broken autopkgtest-satdep:ppc64el Depends on r-bioc-qvalue:ppc64el < none | 2.36.0-1 @un uH >
173s   Considering r-bioc-qvalue:ppc64el 1 as a solution to autopkgtest-satdep:ppc64el 9998
173s   Re-Instated r-cran-plyr:ppc64el
173s   Re-Instated r-cran-reshape2:ppc64el
173s   Re-Instated r-bioc-qvalue:ppc64el
173s Broken autopkgtest-satdep:ppc64el Depends on r-cran-fastcluster:ppc64el < none | 1.2.6-1build1 @un uH >
173s   Considering r-cran-fastcluster:ppc64el 1 as a solution to autopkgtest-satdep:ppc64el 9998
173s   Re-Instated r-cran-fastcluster:ppc64el
173s Broken autopkgtest-satdep:ppc64el Depends on r-bioc-goseq:ppc64el < none | 1.56.0-1 @un uH >
173s   Considering r-bioc-goseq:ppc64el 1 as a solution to autopkgtest-satdep:ppc64el 9998
173s   Re-Instated r-cran-biasedurn:ppc64el
173s   Re-Instated r-cran-xml:ppc64el
173s   Re-Instated r-bioc-biostrings:ppc64el
173s   Re-Instated r-cran-bitops:ppc64el
173s   Re-Instated r-bioc-rhtslib:ppc64el
173s   Re-Instated r-bioc-rsamtools:ppc64el
173s   Re-Instated r-bioc-genomicalignments:ppc64el
173s   Re-Instated r-bioc-biocio:ppc64el
173s   Re-Instated r-cran-rcurl:ppc64el
173s   Re-Instated r-cran-rjson:ppc64el
173s   Re-Instated r-cran-restfulr:ppc64el
173s   Re-Instated r-bioc-rtracklayer:ppc64el
173s   Re-Instated r-cran-plogr:ppc64el
173s   Re-Instated r-cran-rsqlite:ppc64el
173s   Re-Instated r-cran-png:ppc64el
173s   Re-Instated r-bioc-keggrest:ppc64el
173s   Re-Instated r-bioc-annotationdbi:ppc64el
173s   Re-Instated libjs-lunr:ppc64el
173s   Re-Instated r-cran-bookdown:ppc64el
173s   Re-Instated r-cran-biocmanager:ppc64el
173s   Re-Instated tex-common:ppc64el
173s   Re-Instated libio-string-perl:ppc64el
173s   Re-Instated liblatex-tounicode-perl:ppc64el
173s   Re-Instated libbibtex-parser-perl:ppc64el
173s   Re-Instated libkpathsea6:ppc64el
173s   Re-Instated libptexenc1:ppc64el
173s   Re-Instated libsynctex2:ppc64el
173s   Re-Instated libtexlua53-5:ppc64el
173s   Re-Instated t1utils:ppc64el
173s   Re-Instated libmpfi0:ppc64el
173s   Re-Instated libpotrace0:ppc64el
173s   Re-Instated libteckit0:ppc64el
173s   Re-Instated libxmu6:ppc64el
173s   Re-Instated libxpm4:ppc64el
173s   Re-Instated libxaw7:ppc64el
173s   Re-Instated libzzip-0-13t64:ppc64el
173s   Re-Instated texlive-binaries:ppc64el
173s   Re-Instated texlive-base:ppc64el
173s   Re-Instated fonts-lmodern:ppc64el
173s   Re-Instated texlive-latex-base:ppc64el
173s   Re-Instated texlive-bibtex-extra:ppc64el
173s   Re-Instated r-bioc-biocversion:ppc64el
173s   Re-Instated r-bioc-biocstyle:ppc64el
173s   Re-Instated r-bioc-genomicfeatures:ppc64el
173s   Re-Instated r-cran-httr2:ppc64el
173s   Re-Instated r-cran-filelock:ppc64el
173s   Re-Instated r-bioc-biocfilecache:ppc64el
173s   Re-Instated r-bioc-biomart:ppc64el
173s   Re-Instated r-bioc-txdbmaker:ppc64el
173s   Re-Instated r-bioc-genelendatabase:ppc64el
173s   Re-Instated r-bioc-go.db:ppc64el
173s   Re-Instated r-bioc-goseq:ppc64el
173s Broken autopkgtest-satdep:ppc64el Depends on r-cran-argparse:ppc64el < none | 2.2.3+dfsg-1 @un uH >
173s   Considering r-cran-argparse:ppc64el 1 as a solution to autopkgtest-satdep:ppc64el 9998
173s   Re-Instated r-cran-findpython:ppc64el
173s   Re-Instated r-cran-argparse:ppc64el
173s Broken autopkgtest-satdep:ppc64el Depends on r-cran-goplot:ppc64el < none | 1.0.2-2 @un uH >
173s   Considering r-cran-goplot:ppc64el 1 as a solution to autopkgtest-satdep:ppc64el 9998
173s   Re-Instated r-cran-ggdendro:ppc64el
173s   Re-Instated r-cran-gridextra:ppc64el
173s   Re-Instated r-cran-goplot:ppc64el
173s Broken autopkgtest-satdep:ppc64el Depends on r-cran-kernsmooth:ppc64el < none | 2.23-24-1 @un uH >
173s   Considering r-cran-kernsmooth:ppc64el 1 as a solution to autopkgtest-satdep:ppc64el 9998
173s   Re-Instated r-cran-kernsmooth:ppc64el
173s Broken autopkgtest-satdep:ppc64el Depends on hisat2:ppc64el < none | 2.2.1-5 @un uH >
173s   Considering hisat2:ppc64el 1 as a solution to autopkgtest-satdep:ppc64el 9998
173s   Re-Instated hisat2:ppc64el
173s Broken autopkgtest-satdep:ppc64el Depends on python3-hisat2:ppc64el < none | 2.2.1-5 @un uH >
173s   Considering python3-hisat2:ppc64el 1 as a solution to autopkgtest-satdep:ppc64el 9998
173s   Re-Instated python3-hisat2:ppc64el
173s Broken autopkgtest-satdep:ppc64el Depends on r-bioc-dexseq:ppc64el < none | 1.50.0+dfsg-1 @un uH >
173s   Considering r-bioc-dexseq:ppc64el 1 as a solution to autopkgtest-satdep:ppc64el 9998
173s   Re-Instated r-cran-hwriter:ppc64el
173s   Re-Instated r-bioc-annotate:ppc64el
173s   Re-Instated r-bioc-geneplotter:ppc64el
173s   Re-Instated r-cran-survival:ppc64el
173s   Re-Instated r-bioc-genefilter:ppc64el
173s   Re-Instated r-bioc-dexseq:ppc64el
173s Done
173s Some packages could not be installed. This may mean that you have
173s requested an impossible situation or if you are using the unstable
173s distribution that some required packages have not yet been created
173s or been moved out of Incoming.
173s The following information may help to resolve the situation:
173s 
173s The following packages have unmet dependencies:
173s  autopkgtest-satdep : Depends: libpicard-java but it is not going to be installed
173s                       Depends: salmon but it is not installable
173s E: Unable to correct problems, you have held broken packages.
173s autopkgtest: WARNING: Test dependencies are unsatisfiable with using apt pinning. Retrying with using all packages from plucky-proposed
174s Reading package lists...
174s Building dependency tree...
174s Reading state information...
174s Starting pkgProblemResolver with broken count: 1
175s Starting 2 pkgProblemResolver with broken count: 1
175s Investigating (0) autopkgtest-satdep:ppc64el < none -> 0 @un puN Ib >
175s Broken autopkgtest-satdep:ppc64el Depends on trinityrnaseq:ppc64el < none | 2.15.1+dfsg-5build1 @un uH >
175s   Considering trinityrnaseq:ppc64el 1 as a solution to autopkgtest-satdep:ppc64el 9998
175s   Re-Instated libgomp1:ppc64el
175s   Re-Instated libdeflate0:ppc64el
175s   Re-Instated libhtscodecs2:ppc64el
175s   Re-Instated libhts3t64:ppc64el
175s   Re-Instated ca-certificates-java:ppc64el
175s   Re-Instated java-common:ppc64el
175s   Re-Instated liblcms2-2:ppc64el
175s   Re-Instated libjpeg-turbo8:ppc64el
175s   Re-Instated libjpeg8:ppc64el
175s   Re-Instated libpcsclite1:ppc64el
175s   Re-Instated openjdk-21-jre-headless:ppc64el
175s   Re-Instated default-jre-headless:ppc64el
175s   Re-Instated jaligner:ppc64el
175s   Re-Instated libgetopt-java:ppc64el
175s   Re-Instated libatinject-jsr330-api-java:ppc64el
175s   Re-Instated liberror-prone-java:ppc64el
175s   Re-Instated libjsr305-java:ppc64el
175s   Re-Instated libguava-java:ppc64el
175s   Re-Instated libjung-free-java:ppc64el
175s   Re-Instated bowtie:ppc64el
175s   Re-Instated bowtie2:ppc64el
175s   Re-Instated libencode-locale-perl:ppc64el
175s   Re-Instated libtimedate-perl:ppc64el
175s   Re-Instated libhttp-date-perl:ppc64el
175s   Re-Instated libfile-listing-perl:ppc64el
175s   Re-Instated libhtml-tagset-perl:ppc64el
175s   Re-Instated liburi-perl:ppc64el
175s   Re-Instated libhtml-parser-perl:ppc64el
175s   Re-Instated libhtml-tree-perl:ppc64el
175s   Re-Instated libclone-perl:ppc64el
175s   Re-Instated libio-html-perl:ppc64el
175s   Re-Instated liblwp-mediatypes-perl:ppc64el
175s   Re-Instated libhttp-message-perl:ppc64el
175s   Re-Instated libhttp-cookies-perl:ppc64el
175s   Re-Instated libhttp-negotiate-perl:ppc64el
175s   Re-Instated perl-openssl-defaults:ppc64el
175s   Re-Instated libnet-ssleay-perl:ppc64el
175s   Re-Instated libio-socket-ssl-perl:ppc64el
175s   Re-Instated libnet-http-perl:ppc64el
175s   Re-Instated liblwp-protocol-https-perl:ppc64el
175s   Re-Instated libtry-tiny-perl:ppc64el
175s   Re-Instated libwww-robotrules-perl:ppc64el
175s   Re-Instated libwww-perl:ppc64el
175s   Re-Instated samtools:ppc64el
175s   Re-Instated libjellyfish-2.0-2:ppc64el
175s   Re-Instated jellyfish:ppc64el
175s   Re-Instated zip:ppc64el
175s   Re-Instated unzip:ppc64el
175s   Re-Instated libpaper1:ppc64el
175s   Re-Instated libpaper-utils:ppc64el
175s   Re-Instated xdg-utils:ppc64el
175s   Re-Instated libblas3:ppc64el
175s   Re-Instated fonts-dejavu-mono:ppc64el
175s   Re-Instated fonts-dejavu-core:ppc64el
175s   Re-Instated fontconfig-config:ppc64el
175s   Re-Instated libfontconfig1:ppc64el
175s   Re-Instated libpixman-1-0:ppc64el
175s   Re-Instated libxcb-render0:ppc64el
175s   Re-Instated libxcb-shm0:ppc64el
175s   Re-Instated libxrender1:ppc64el
175s   Re-Instated libcairo2:ppc64el
175s   Re-Instated libgfortran5:ppc64el
175s   Re-Instated liblapack3:ppc64el
175s   Re-Instated fontconfig:ppc64el
175s   Re-Instated libgraphite2-3:ppc64el
175s   Re-Instated libharfbuzz0b:ppc64el
175s   Re-Instated libthai-data:ppc64el
175s   Re-Instated libdatrie1:ppc64el
175s   Re-Instated libthai0:ppc64el
175s   Re-Instated libpango-1.0-0:ppc64el
175s   Re-Instated libpangoft2-1.0-0:ppc64el
175s   Re-Instated libpangocairo-1.0-0:ppc64el
175s   Re-Instated libtcl8.6:ppc64el
175s   Re-Instated libjbig0:ppc64el
175s   Re-Instated liblerc4:ppc64el
175s   Re-Instated libsharpyuv0:ppc64el
175s   Re-Instated libwebp7:ppc64el
175s   Re-Instated libtiff6:ppc64el
175s   Re-Instated libxft2:ppc64el
175s   Re-Instated x11-common:ppc64el
175s   Re-Instated libxss1:ppc64el
175s   Re-Instated libtk8.6:ppc64el
175s   Re-Instated libice6:ppc64el
175s   Re-Instated libsm6:ppc64el
175s   Re-Instated libxt6t64:ppc64el
175s   Re-Instated r-base-core:ppc64el
175s   Re-Instated rsem:ppc64el
175s   Re-Instated libbamtools2.5.2:ppc64el
175s   Re-Instated libboost-filesystem1.83.0:ppc64el
175s   Re-Instated libboost-program-options1.83.0:ppc64el
175s   Re-Instated libboost-thread1.83.0:ppc64el
175s   Re-Instated libprotobuf32t64:ppc64el
175s   Re-Instated berkeley-express:ppc64el
175s   Re-Instated libjbzip2-java:ppc64el
175s   Re-Instated libgdk-pixbuf2.0-common:ppc64el
175s   Re-Instated libgdk-pixbuf-2.0-0:ppc64el
175s   Re-Instated gtk-update-icon-cache:ppc64el
175s   Re-Instated hicolor-icon-theme:ppc64el
175s   Re-Instated humanity-icon-theme:ppc64el
175s   Re-Instated ubuntu-mono:ppc64el
175s   Re-Instated adwaita-icon-theme:ppc64el
175s   Re-Instated at-spi2-common:ppc64el
175s   Re-Instated libatk1.0-0t64:ppc64el
175s   Re-Instated libxi6:ppc64el
175s   Re-Instated libatspi2.0-0t64:ppc64el
175s   Re-Instated libatk-bridge2.0-0t64:ppc64el
175s   Re-Instated libcairo-gobject2:ppc64el
175s   Re-Instated libcolord2:ppc64el
175s   Re-Instated libavahi-common-data:ppc64el
175s   Re-Instated libavahi-common3:ppc64el
175s   Re-Instated libavahi-client3:ppc64el
175s   Re-Instated libcups2t64:ppc64el
175s   Re-Instated libepoxy0:ppc64el
175s   Re-Instated libwayland-client0:ppc64el
175s   Re-Instated libwayland-cursor0:ppc64el
175s   Re-Instated libwayland-egl1:ppc64el
175s   Re-Instated libxcomposite1:ppc64el
175s   Re-Instated libxfixes3:ppc64el
175s   Re-Instated libxcursor1:ppc64el
175s   Re-Instated libxdamage1:ppc64el
175s   Re-Instated libxinerama1:ppc64el
175s   Re-Instated libxrandr2:ppc64el
175s   Re-Instated libdconf1:ppc64el
175s   Re-Instated dconf-service:ppc64el
175s   Re-Instated dconf-gsettings-backend:ppc64el
175s   Re-Instated libgtk-3-common:ppc64el
175s   Re-Instated libgtk-3-0t64:ppc64el
175s   Re-Instated libglvnd0:ppc64el
175s   Re-Instated libglapi-mesa:ppc64el
175s   Re-Instated libx11-xcb1:ppc64el
175s   Re-Instated libxcb-dri2-0:ppc64el
175s   Re-Instated libxcb-dri3-0:ppc64el
175s   Re-Instated libxcb-glx0:ppc64el
175s   Re-Instated libxcb-present0:ppc64el
175s   Re-Instated libxcb-randr0:ppc64el
175s   Re-Instated libxcb-sync1:ppc64el
175s   Re-Instated libxcb-xfixes0:ppc64el
175s   Re-Instated libxshmfence1:ppc64el
175s   Re-Instated libxxf86vm1:ppc64el
175s   Re-Instated libdrm-amdgpu1:ppc64el
175s   Re-Instated libdrm-radeon1:ppc64el
175s   Re-Instated mesa-libgallium:ppc64el
175s   Re-Instated libvulkan1:ppc64el
175s   Re-Instated libwayland-server0:ppc64el
175s   Re-Instated libgbm1:ppc64el
175s   Re-Instated libgl1-mesa-dri:ppc64el
175s   Re-Instated libglx-mesa0:ppc64el
175s   Re-Instated libglx0:ppc64el
175s   Re-Instated libgl1:ppc64el
175s   Re-Instated libasound2-data:ppc64el
175s   Re-Instated libasound2t64:ppc64el
175s   Re-Instated libgif7:ppc64el
175s   Re-Instated libxtst6:ppc64el
175s   Re-Instated openjdk-21-jre:ppc64el
175s   Re-Instated default-jre:ppc64el
175s   Re-Instated trimmomatic:ppc64el
175s   Re-Instated parafly:ppc64el
175s   Re-Instated ncbi-data:ppc64el
175s   Re-Instated libmbedcrypto7t64:ppc64el
175s   Re-Instated libmbedx509-1t64:ppc64el
175s   Re-Instated libmbedtls14t64:ppc64el
175s   Re-Instated ncbi-blast+:ppc64el
175s   Re-Instated python3-numpy:ppc64el
175s   Re-Instated python3-pysam:ppc64el
175s   Re-Instated python3-htseq:ppc64el
175s   Re-Instated subread:ppc64el
175s   Re-Instated kallisto:ppc64el
175s   Re-Instated trinityrnaseq:ppc64el
175s Broken autopkgtest-satdep:ppc64el Depends on trinityrnaseq-examples:ppc64el < none | 2.15.1+dfsg-5build1 @un uH >
175s   Considering trinityrnaseq-examples:ppc64el 1 as a solution to autopkgtest-satdep:ppc64el 9998
175s   Re-Instated trinityrnaseq-examples:ppc64el
175s Broken autopkgtest-satdep:ppc64el Depends on r-cran-tidyverse:ppc64el < none | 2.0.0+dfsg-1 @un uH >
175s   Considering r-cran-tidyverse:ppc64el 1 as a solution to autopkgtest-satdep:ppc64el 9998
175s   Re-Instated r-cran-backports:ppc64el
175s   Re-Instated r-cran-cli:ppc64el
175s   Re-Instated r-cran-generics:ppc64el
175s   Re-Instated r-cran-glue:ppc64el
175s   Re-Instated r-cran-rlang:ppc64el
175s   Re-Instated r-cran-lifecycle:ppc64el
175s   Re-Instated r-cran-magrittr:ppc64el
175s   Re-Instated r-cran-fansi:ppc64el
175s   Re-Instated r-cran-utf8:ppc64el
175s   Re-Instated r-cran-vctrs:ppc64el
175s   Re-Instated r-cran-pillar:ppc64el
175s   Re-Instated r-cran-r6:ppc64el
175s   Re-Instated r-cran-pkgconfig:ppc64el
175s   Re-Instated r-cran-tibble:ppc64el
175s   Re-Instated r-cran-withr:ppc64el
175s   Re-Instated r-cran-tidyselect:ppc64el
175s   Re-Instated r-cran-dplyr:ppc64el
175s   Re-Instated r-cran-purrr:ppc64el
175s   Re-Instated r-cran-stringi:ppc64el
175s   Re-Instated r-cran-stringr:ppc64el
175s   Re-Instated r-cran-cpp11:ppc64el
175s   Re-Instated r-cran-tidyr:ppc64el
175s   Re-Instated r-cran-broom:ppc64el
175s   Re-Instated r-cran-fastmap:ppc64el
175s   Re-Instated r-cran-cachem:ppc64el
175s   Re-Instated r-cran-memoise:ppc64el
175s   Re-Instated r-cran-conflicted:ppc64el
175s   Re-Instated r-cran-blob:ppc64el
175s   Re-Instated r-cran-dbi:ppc64el
175s   Re-Instated r-cran-dbplyr:ppc64el
175s   Re-Instated r-cran-data.table:ppc64el
175s   Re-Instated r-cran-dtplyr:ppc64el
175s   Re-Instated r-cran-ellipsis:ppc64el
175s   Re-Instated r-cran-forcats:ppc64el
175s   Re-Instated r-cran-gtable:ppc64el
175s   Re-Instated r-cran-isoband:ppc64el
175s   Re-Instated r-cran-mass:ppc64el
175s   Re-Instated r-cran-lattice:ppc64el
175s   Re-Instated r-cran-nlme:ppc64el
175s   Re-Instated r-cran-matrix:ppc64el
175s   Re-Instated r-cran-mgcv:ppc64el
175s   Re-Instated r-cran-farver:ppc64el
175s   Re-Instated r-cran-labeling:ppc64el
175s   Re-Instated r-cran-colorspace:ppc64el
175s   Re-Instated r-cran-munsell:ppc64el
175s   Re-Instated r-cran-rcolorbrewer:ppc64el
175s   Re-Instated r-cran-viridislite:ppc64el
175s   Re-Instated r-cran-scales:ppc64el
175s   Re-Instated r-cran-ggplot2:ppc64el
175s   Re-Instated r-cran-fs:ppc64el
175s   Re-Instated r-cran-curl:ppc64el
175s   Re-Instated r-cran-jsonlite:ppc64el
175s   Re-Instated r-cran-mime:ppc64el
175s   Re-Instated r-cran-sys:ppc64el
175s   Re-Instated r-cran-askpass:ppc64el
175s   Re-Instated r-cran-openssl:ppc64el
175s   Re-Instated r-cran-httr:ppc64el
175s   Re-Instated r-cran-rappdirs:ppc64el
175s   Re-Instated r-cran-gargle:ppc64el
175s   Re-Instated r-cran-uuid:ppc64el
175s   Re-Instated r-cran-googledrive:ppc64el
175s   Re-Instated r-cran-rematch:ppc64el
175s   Re-Instated r-cran-cellranger:ppc64el
175s   Re-Instated r-cran-ids:ppc64el
175s   Re-Instated r-cran-rematch2:ppc64el
175s   Re-Instated r-cran-googlesheets4:ppc64el
175s   Re-Instated r-cran-hms:ppc64el
175s   Re-Instated r-cran-clipr:ppc64el
175s   Re-Instated r-cran-crayon:ppc64el
175s   Re-Instated r-cran-bit:ppc64el
175s   Re-Instated r-cran-bit64:ppc64el
175s   Re-Instated r-cran-tzdb:ppc64el
175s   Re-Instated r-cran-prettyunits:ppc64el
175s   Re-Instated r-cran-progress:ppc64el
175s   Re-Instated r-cran-vroom:ppc64el
175s   Re-Instated r-cran-littler:ppc64el
175s   Re-Instated littler:ppc64el
175s   Re-Instated r-cran-pkgkitten:ppc64el
175s   Re-Instated r-cran-rcpp:ppc64el
175s   Re-Instated r-cran-readr:ppc64el
175s   Re-Instated r-cran-haven:ppc64el
175s   Re-Instated r-cran-timechange:ppc64el
175s   Re-Instated r-cran-lubridate:ppc64el
175s   Re-Instated r-cran-modelr:ppc64el
175s   Re-Instated r-cran-systemfonts:ppc64el
175s   Re-Instated r-cran-textshaping:ppc64el
175s   Re-Instated r-cran-ragg:ppc64el
175s   Re-Instated r-cran-readxl:ppc64el
175s   Re-Instated r-cran-ps:ppc64el
175s   Re-Instated r-cran-processx:ppc64el
175s   Re-Instated r-cran-callr:ppc64el
175s   Re-Instated r-cran-evaluate:ppc64el
175s   Re-Instated r-cran-xfun:ppc64el
175s   Re-Instated libjs-highlight.js:ppc64el
175s   Re-Instated libjs-jquery:ppc64el
175s   Re-Instated r-cran-highr:ppc64el
175s   Re-Instated r-cran-yaml:ppc64el
175s   Re-Instated fonts-mathjax:ppc64el
175s   Re-Instated libjs-mathjax:ppc64el
175s   Re-Instated fonts-glyphicons-halflings:ppc64el
175s   Re-Instated libjs-bootstrap:ppc64el
175s   Re-Instated libjs-jquery-datatables:ppc64el
175s   Re-Instated node-normalize.css:ppc64el
175s   Re-Instated r-cran-knitr:ppc64el
175s   Re-Instated r-cran-base64enc:ppc64el
175s   Re-Instated r-cran-digest:ppc64el
175s   Re-Instated r-cran-htmltools:ppc64el
175s   Re-Instated r-cran-jquerylib:ppc64el
175s   Re-Instated r-cran-sass:ppc64el
175s   Re-Instated node-bootstrap-sass:ppc64el
175s   Re-Instated javascript-common:ppc64el
175s   Re-Instated libjs-popper.js:ppc64el
175s   Re-Instated libjs-bootstrap4:ppc64el
175s   Re-Instated r-cran-bslib:ppc64el
175s   Re-Instated r-cran-fontawesome:ppc64el
175s   Re-Instated r-cran-tinytex:ppc64el
175s   Re-Instated libjs-jquery-ui:ppc64el
175s   Re-Instated libjs-modernizr:ppc64el
175s   Re-Instated libjs-prettify:ppc64el
175s   Re-Instated fonts-font-awesome:ppc64el
175s   Re-Instated pandoc-data:ppc64el
175s   Re-Instated liblua5.4-0:ppc64el
175s   Re-Instated pandoc:ppc64el
175s   Re-Instated r-cran-later:ppc64el
175s   Re-Instated r-cran-promises:ppc64el
175s   Re-Instated r-cran-httpuv:ppc64el
175s   Re-Instated r-cran-xtable:ppc64el
175s   Re-Instated r-cran-sourcetools:ppc64el
175s   Re-Instated r-cran-commonmark:ppc64el
175s   Re-Instated libjs-json:ppc64el
175s   Re-Instated libjs-es5-shim:ppc64el
175s   Re-Instated libjs-twitter-bootstrap-datepicker:ppc64el
175s   Re-Instated libjs-sifter.js:ppc64el
175s   Re-Instated libjs-microplugin.js:ppc64el
175s   Re-Instated libjs-jquery-selectize.js:ppc64el
175s   Re-Instated libjs-d3:ppc64el
175s   Re-Instated node-html5shiv:ppc64el
175s   Re-Instated r-cran-shiny:ppc64el
175s   Re-Instated r-cran-rmarkdown:ppc64el
175s   Re-Instated r-cran-rstudioapi:ppc64el
175s   Re-Instated r-cran-reprex:ppc64el
175s   Re-Instated r-cran-selectr:ppc64el
175s   Re-Instated r-cran-xml2:ppc64el
175s   Re-Instated r-cran-rvest:ppc64el
175s   Re-Instated r-cran-tidyverse:ppc64el
175s Broken autopkgtest-satdep:ppc64el Depends on libpicard-java:ppc64el < none | 3.1.1+dfsg-1 @un uH >
175s   Considering libpicard-java:ppc64el 1 as a solution to autopkgtest-satdep:ppc64el 9998
175s   Re-Instated libapache-pom-java:ppc64el
175s   Re-Instated libcommons-parent-java:ppc64el
175s   Re-Instated libcommons-codec-java:ppc64el
175s   Re-Instated libcommons-io-java:ppc64el
175s   Re-Instated libcommons-compress-java:ppc64el
175s   Re-Instated libcommons-logging-java:ppc64el
175s   Re-Instated libcommons-jexl2-java:ppc64el
175s   Re-Instated libmjson-java:ppc64el
175s     Reinst Failed early because of libngs-java:ppc64el
175s     Reinst Failed because of libhtsjdk-java:ppc64el
175s Broken autopkgtest-satdep:ppc64el Depends on salmon:ppc64el < none @un H >
175s Broken autopkgtest-satdep:ppc64el Depends on r-bioc-edger:ppc64el < none | 4.2.1+dfsg-1 @un uH >
175s   Considering r-bioc-edger:ppc64el 1 as a solution to autopkgtest-satdep:ppc64el 9998
175s   Re-Instated r-bioc-biocgenerics:ppc64el
175s   Re-Instated r-cran-statmod:ppc64el
175s   Re-Instated r-bioc-limma:ppc64el
175s   Re-Instated r-cran-locfit:ppc64el
175s   Re-Instated r-bioc-edger:ppc64el
175s Broken autopkgtest-satdep:ppc64el Depends on r-bioc-deseq2:ppc64el < none | 1.44.0+dfsg-1 @un uH >
175s   Considering r-bioc-deseq2:ppc64el 1 as a solution to autopkgtest-satdep:ppc64el 9998
175s   Re-Instated r-bioc-s4vectors:ppc64el
175s   Re-Instated r-bioc-iranges:ppc64el
175s   Re-Instated r-bioc-ucsc.utils:ppc64el
175s   Re-Instated r-bioc-genomeinfodbdata:ppc64el
175s   Re-Instated r-bioc-genomeinfodb:ppc64el
175s   Re-Instated zlib1g-dev:ppc64el
175s   Re-Instated r-bioc-zlibbioc:ppc64el
175s   Re-Instated r-bioc-xvector:ppc64el
175s   Re-Instated r-bioc-genomicranges:ppc64el
175s   Re-Instated r-cran-matrixstats:ppc64el
175s   Re-Instated r-bioc-matrixgenerics:ppc64el
175s   Re-Instated r-bioc-biobase:ppc64el
175s   Re-Instated r-cran-abind:ppc64el
175s   Re-Instated r-bioc-s4arrays:ppc64el
175s   Re-Instated r-bioc-sparsearray:ppc64el
175s   Re-Instated r-bioc-delayedarray:ppc64el
175s   Re-Instated r-bioc-summarizedexperiment:ppc64el
175s   Re-Instated r-cran-formatr:ppc64el
175s   Re-Instated r-cran-lambda.r:ppc64el
175s   Re-Instated r-cran-futile.options:ppc64el
175s   Re-Instated r-cran-futile.logger:ppc64el
175s   Re-Instated r-cran-snow:ppc64el
175s   Re-Instated r-cran-codetools:ppc64el
175s   Re-Instated libitm1:ppc64el
175s   Re-Instated libasan8:ppc64el
175s   Re-Instated liblsan0:ppc64el
175s   Re-Instated libtsan2:ppc64el
175s   Re-Instated libubsan1:ppc64el
175s   Re-Instated libquadmath0:ppc64el
175s   Re-Instated libgcc-14-dev:ppc64el
175s   Re-Instated libstdc++-14-dev:ppc64el
175s   Re-Instated libboost1.83-dev:ppc64el
175s   Re-Instated libboost-dev:ppc64el
175s   Re-Instated r-cran-bh:ppc64el
175s   Re-Instated r-bioc-biocparallel:ppc64el
175s   Re-Instated r-cran-rcpparmadillo:ppc64el
175s   Re-Instated r-bioc-deseq2:ppc64el
175s Broken autopkgtest-satdep:ppc64el Depends on r-cran-cluster:ppc64el < none | 2.1.6-1build1 @un uH >
175s   Considering r-cran-cluster:ppc64el 1 as a solution to autopkgtest-satdep:ppc64el 9998
175s   Re-Instated r-cran-cluster:ppc64el
175s Broken autopkgtest-satdep:ppc64el Depends on r-bioc-qvalue:ppc64el < none | 2.36.0-1 @un uH >
175s   Considering r-bioc-qvalue:ppc64el 1 as a solution to autopkgtest-satdep:ppc64el 9998
175s   Re-Instated r-cran-plyr:ppc64el
175s   Re-Instated r-cran-reshape2:ppc64el
175s   Re-Instated r-bioc-qvalue:ppc64el
175s Broken autopkgtest-satdep:ppc64el Depends on r-cran-fastcluster:ppc64el < none | 1.2.6-1build1 @un uH >
175s   Considering r-cran-fastcluster:ppc64el 1 as a solution to autopkgtest-satdep:ppc64el 9998
175s   Re-Instated r-cran-fastcluster:ppc64el
175s Broken autopkgtest-satdep:ppc64el Depends on r-bioc-goseq:ppc64el < none | 1.56.0-1 @un uH >
175s   Considering r-bioc-goseq:ppc64el 1 as a solution to autopkgtest-satdep:ppc64el 9998
175s   Re-Instated r-cran-biasedurn:ppc64el
175s   Re-Instated r-cran-xml:ppc64el
175s   Re-Instated r-bioc-biostrings:ppc64el
175s   Re-Instated r-cran-bitops:ppc64el
175s   Re-Instated r-bioc-rhtslib:ppc64el
175s   Re-Instated r-bioc-rsamtools:ppc64el
175s   Re-Instated r-bioc-genomicalignments:ppc64el
175s   Re-Instated r-bioc-biocio:ppc64el
175s   Re-Instated r-cran-rcurl:ppc64el
175s   Re-Instated r-cran-rjson:ppc64el
175s   Re-Instated r-cran-restfulr:ppc64el
175s   Re-Instated r-bioc-rtracklayer:ppc64el
175s   Re-Instated r-cran-plogr:ppc64el
175s   Re-Instated r-cran-rsqlite:ppc64el
175s   Re-Instated r-cran-png:ppc64el
175s   Re-Instated r-bioc-keggrest:ppc64el
175s   Re-Instated r-bioc-annotationdbi:ppc64el
175s   Re-Instated libjs-lunr:ppc64el
175s   Re-Instated r-cran-bookdown:ppc64el
175s   Re-Instated r-cran-biocmanager:ppc64el
175s   Re-Instated tex-common:ppc64el
175s   Re-Instated libio-string-perl:ppc64el
175s   Re-Instated liblatex-tounicode-perl:ppc64el
175s   Re-Instated libbibtex-parser-perl:ppc64el
175s   Re-Instated libkpathsea6:ppc64el
175s   Re-Instated libptexenc1:ppc64el
175s   Re-Instated libsynctex2:ppc64el
175s   Re-Instated libtexlua53-5:ppc64el
175s   Re-Instated t1utils:ppc64el
175s   Re-Instated libmpfi0:ppc64el
175s   Re-Instated libpotrace0:ppc64el
175s   Re-Instated libteckit0:ppc64el
175s   Re-Instated libxmu6:ppc64el
175s   Re-Instated libxpm4:ppc64el
175s   Re-Instated libxaw7:ppc64el
175s   Re-Instated libzzip-0-13t64:ppc64el
175s   Re-Instated texlive-binaries:ppc64el
175s   Re-Instated texlive-base:ppc64el
175s   Re-Instated fonts-lmodern:ppc64el
175s   Re-Instated texlive-latex-base:ppc64el
175s   Re-Instated texlive-bibtex-extra:ppc64el
175s   Re-Instated r-bioc-biocversion:ppc64el
175s   Re-Instated r-bioc-biocstyle:ppc64el
175s   Re-Instated r-bioc-genomicfeatures:ppc64el
175s   Re-Instated r-cran-httr2:ppc64el
175s   Re-Instated r-cran-filelock:ppc64el
175s   Re-Instated r-bioc-biocfilecache:ppc64el
175s   Re-Instated r-bioc-biomart:ppc64el
175s   Re-Instated r-bioc-txdbmaker:ppc64el
175s   Re-Instated r-bioc-genelendatabase:ppc64el
175s   Re-Instated r-bioc-go.db:ppc64el
175s   Re-Instated r-bioc-goseq:ppc64el
175s Broken autopkgtest-satdep:ppc64el Depends on r-cran-argparse:ppc64el < none | 2.2.3+dfsg-1 @un uH >
175s   Considering r-cran-argparse:ppc64el 1 as a solution to autopkgtest-satdep:ppc64el 9998
175s   Re-Instated r-cran-findpython:ppc64el
175s   Re-Instated r-cran-argparse:ppc64el
175s Broken autopkgtest-satdep:ppc64el Depends on r-cran-goplot:ppc64el < none | 1.0.2-2 @un uH >
175s   Considering r-cran-goplot:ppc64el 1 as a solution to autopkgtest-satdep:ppc64el 9998
175s   Re-Instated r-cran-ggdendro:ppc64el
175s   Re-Instated r-cran-gridextra:ppc64el
175s   Re-Instated r-cran-goplot:ppc64el
175s Broken autopkgtest-satdep:ppc64el Depends on r-cran-kernsmooth:ppc64el < none | 2.23-24-1 @un uH >
175s   Considering r-cran-kernsmooth:ppc64el 1 as a solution to autopkgtest-satdep:ppc64el 9998
175s   Re-Instated r-cran-kernsmooth:ppc64el
175s Broken autopkgtest-satdep:ppc64el Depends on hisat2:ppc64el < none | 2.2.1-5 @un uH >
175s   Considering hisat2:ppc64el 1 as a solution to autopkgtest-satdep:ppc64el 9998
175s   Re-Instated hisat2:ppc64el
175s Broken autopkgtest-satdep:ppc64el Depends on python3-hisat2:ppc64el < none | 2.2.1-5 @un uH >
175s   Considering python3-hisat2:ppc64el 1 as a solution to autopkgtest-satdep:ppc64el 9998
175s   Re-Instated python3-hisat2:ppc64el
175s Broken autopkgtest-satdep:ppc64el Depends on r-bioc-dexseq:ppc64el < none | 1.50.0+dfsg-1 @un uH >
175s   Considering r-bioc-dexseq:ppc64el 1 as a solution to autopkgtest-satdep:ppc64el 9998
175s   Re-Instated r-cran-hwriter:ppc64el
175s   Re-Instated r-bioc-annotate:ppc64el
175s   Re-Instated r-bioc-geneplotter:ppc64el
175s   Re-Instated r-cran-survival:ppc64el
175s   Re-Instated r-bioc-genefilter:ppc64el
175s   Re-Instated r-bioc-dexseq:ppc64el
175s Done
175s Some packages could not be installed. This may mean that you have
175s requested an impossible situation or if you are using the unstable
175s distribution that some required packages have not yet been created
175s or been moved out of Incoming.
175s The following information may help to resolve the situation:
175s 
175s The following packages have unmet dependencies:
175s  autopkgtest-satdep : Depends: libpicard-java but it is not going to be installed
175s                       Depends: salmon but it is not installable
175s E: Unable to correct problems, you have held broken packages.
175s autopkgtest: WARNING: Test dependencies are unsatisfiable - calling apt install on test deps directly for further data about failing dependencies in test logs
176s Reading package lists...
176s Building dependency tree...
176s Reading state information...
176s Package salmon is not available, but is referred to by another package.
176s This may mean that the package is missing, has been obsoleted, or
176s is only available from another source
176s 
176s E: Package 'salmon' has no installation candidate
176s run-tests            SKIP installation fails and skip-not-installable set
176s autopkgtest [13:27:19]: @@@@@@@@@@@@@@@@@@@@ summary
176s run-tests            SKIP installation fails and skip-not-installable set
180s nova [W] Using flock in prodstack6-ppc64el
180s Creating nova instance adt-plucky-ppc64el-trinityrnaseq-20241101-132423-juju-7f2275-prod-proposed-migration-environment-15-626e0f4e-d0ea-43d4-b36c-500b06d57ff5 from image adt/ubuntu-plucky-ppc64el-server-20241101.img (UUID d479b61b-bfab-4ebe-8e06-591f77402620)...