0s autopkgtest [02:49:46]: starting date and time: 2024-11-14 02:49:46+0000 0s autopkgtest [02:49:46]: git checkout: 6f3be7a8 Fix armhf LXD image generation for plucky 0s autopkgtest [02:49:46]: host juju-7f2275-prod-proposed-migration-environment-20; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.nr9kz4ho/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:python3-defaults,src:python3-stdlib-extensions --apt-upgrade tiddit --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 '--env=ADT_TEST_TRIGGERS=python3-defaults/3.12.7-1 python3-stdlib-extensions/3.12.7-1' -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest-ppc64el --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-20@bos03-ppc64el-25.secgroup --name adt-plucky-ppc64el-tiddit-20241114-024946-juju-7f2275-prod-proposed-migration-environment-20-8b6dd9bf-3ec8-4eb3-acb4-eeb8d6172902 --image adt/ubuntu-plucky-ppc64el-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-20 --net-id=net_prod-proposed-migration-ppc64el -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,keyserver.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/ 110s autopkgtest [02:51:36]: testbed dpkg architecture: ppc64el 110s autopkgtest [02:51:36]: testbed apt version: 2.9.8 110s autopkgtest [02:51:36]: @@@@@@@@@@@@@@@@@@@@ test bed setup 111s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease [73.9 kB] 112s Get:2 http://ftpmaster.internal/ubuntu plucky-proposed/universe Sources [977 kB] 112s Get:3 http://ftpmaster.internal/ubuntu plucky-proposed/restricted Sources [7016 B] 112s Get:4 http://ftpmaster.internal/ubuntu plucky-proposed/main Sources [96.9 kB] 112s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse Sources [15.4 kB] 112s Get:6 http://ftpmaster.internal/ubuntu plucky-proposed/main ppc64el Packages [107 kB] 112s Get:7 http://ftpmaster.internal/ubuntu plucky-proposed/universe ppc64el Packages [699 kB] 112s Get:8 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse ppc64el Packages [8544 B] 112s Fetched 1985 kB in 1s (2187 kB/s) 112s Reading package lists... 115s Reading package lists... 115s Building dependency tree... 115s Reading state information... 115s Calculating upgrade... 115s The following NEW packages will be installed: 115s python3.13-gdbm 115s The following packages will be upgraded: 115s bpfcc-tools bpftrace libbpfcc libgnutls30t64 libjson-glib-1.0-0 115s libjson-glib-1.0-common libnewt0.52 libpython3-stdlib libutempter0 python3 115s python3-bpfcc python3-gdbm python3-minimal python3-newt whiptail 115s 15 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. 115s Need to get 4700 kB of archives. 115s After this operation, 215 kB of additional disk space will be used. 115s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed/main ppc64el python3-minimal ppc64el 3.12.7-1 [27.4 kB] 115s Get:2 http://ftpmaster.internal/ubuntu plucky-proposed/main ppc64el python3 ppc64el 3.12.7-1 [24.0 kB] 115s Get:3 http://ftpmaster.internal/ubuntu plucky-proposed/main ppc64el libpython3-stdlib ppc64el 3.12.7-1 [10.0 kB] 115s Get:4 http://ftpmaster.internal/ubuntu plucky/main ppc64el libgnutls30t64 ppc64el 3.8.8-2ubuntu1 [1072 kB] 116s Get:5 http://ftpmaster.internal/ubuntu plucky/main ppc64el python3-newt ppc64el 0.52.24-2ubuntu4 [21.8 kB] 116s Get:6 http://ftpmaster.internal/ubuntu plucky/main ppc64el libnewt0.52 ppc64el 0.52.24-2ubuntu4 [62.1 kB] 116s Get:7 http://ftpmaster.internal/ubuntu plucky/main ppc64el whiptail ppc64el 0.52.24-2ubuntu4 [19.5 kB] 116s Get:8 http://ftpmaster.internal/ubuntu plucky/main ppc64el python3.13-gdbm ppc64el 3.13.0-2 [31.5 kB] 116s Get:9 http://ftpmaster.internal/ubuntu plucky-proposed/main ppc64el python3-gdbm ppc64el 3.12.7-1 [8640 B] 116s Get:10 http://ftpmaster.internal/ubuntu plucky/main ppc64el libbpfcc ppc64el 0.30.0+ds-1ubuntu5 [696 kB] 116s Get:11 http://ftpmaster.internal/ubuntu plucky/main ppc64el python3-bpfcc all 0.30.0+ds-1ubuntu5 [40.4 kB] 116s Get:12 http://ftpmaster.internal/ubuntu plucky/main ppc64el bpfcc-tools all 0.30.0+ds-1ubuntu5 [697 kB] 116s Get:13 http://ftpmaster.internal/ubuntu plucky/main ppc64el bpftrace ppc64el 0.21.2-2ubuntu2 [1898 kB] 116s Get:14 http://ftpmaster.internal/ubuntu plucky/main ppc64el libjson-glib-1.0-common all 1.10.0+ds-3 [5586 B] 116s Get:15 http://ftpmaster.internal/ubuntu plucky/main ppc64el libjson-glib-1.0-0 ppc64el 1.10.0+ds-3 [76.0 kB] 116s Get:16 http://ftpmaster.internal/ubuntu plucky/main ppc64el libutempter0 ppc64el 1.2.1-4 [9850 B] 116s Fetched 4700 kB in 1s (5985 kB/s) 117s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 73767 files and directories currently installed.) 117s Preparing to unpack .../python3-minimal_3.12.7-1_ppc64el.deb ... 117s Unpacking python3-minimal (3.12.7-1) over (3.12.6-0ubuntu1) ... 117s Setting up python3-minimal (3.12.7-1) ... 117s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 73767 files and directories currently installed.) 117s Preparing to unpack .../python3_3.12.7-1_ppc64el.deb ... 117s Unpacking python3 (3.12.7-1) over (3.12.6-0ubuntu1) ... 117s Preparing to unpack .../libpython3-stdlib_3.12.7-1_ppc64el.deb ... 117s Unpacking libpython3-stdlib:ppc64el (3.12.7-1) over (3.12.6-0ubuntu1) ... 117s Preparing to unpack .../libgnutls30t64_3.8.8-2ubuntu1_ppc64el.deb ... 117s Unpacking libgnutls30t64:ppc64el (3.8.8-2ubuntu1) over (3.8.6-2ubuntu1) ... 117s Setting up libgnutls30t64:ppc64el (3.8.8-2ubuntu1) ... 117s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 73767 files and directories currently installed.) 117s Preparing to unpack .../00-python3-newt_0.52.24-2ubuntu4_ppc64el.deb ... 117s Unpacking python3-newt:ppc64el (0.52.24-2ubuntu4) over (0.52.24-2ubuntu3) ... 117s Preparing to unpack .../01-libnewt0.52_0.52.24-2ubuntu4_ppc64el.deb ... 117s Unpacking libnewt0.52:ppc64el (0.52.24-2ubuntu4) over (0.52.24-2ubuntu3) ... 117s Preparing to unpack .../02-whiptail_0.52.24-2ubuntu4_ppc64el.deb ... 117s Unpacking whiptail (0.52.24-2ubuntu4) over (0.52.24-2ubuntu3) ... 117s Selecting previously unselected package python3.13-gdbm. 117s Preparing to unpack .../03-python3.13-gdbm_3.13.0-2_ppc64el.deb ... 117s Unpacking python3.13-gdbm (3.13.0-2) ... 117s Preparing to unpack .../04-python3-gdbm_3.12.7-1_ppc64el.deb ... 117s Unpacking python3-gdbm:ppc64el (3.12.7-1) over (3.12.6-1ubuntu1) ... 117s Preparing to unpack .../05-libbpfcc_0.30.0+ds-1ubuntu5_ppc64el.deb ... 117s Unpacking libbpfcc:ppc64el (0.30.0+ds-1ubuntu5) over (0.30.0+ds-1ubuntu4) ... 117s Preparing to unpack .../06-python3-bpfcc_0.30.0+ds-1ubuntu5_all.deb ... 117s Unpacking python3-bpfcc (0.30.0+ds-1ubuntu5) over (0.30.0+ds-1ubuntu4) ... 117s Preparing to unpack .../07-bpfcc-tools_0.30.0+ds-1ubuntu5_all.deb ... 117s Unpacking bpfcc-tools (0.30.0+ds-1ubuntu5) over (0.30.0+ds-1ubuntu4) ... 118s Preparing to unpack .../08-bpftrace_0.21.2-2ubuntu2_ppc64el.deb ... 118s Unpacking bpftrace (0.21.2-2ubuntu2) over (0.21.2-2) ... 118s Preparing to unpack .../09-libjson-glib-1.0-common_1.10.0+ds-3_all.deb ... 118s Unpacking libjson-glib-1.0-common (1.10.0+ds-3) over (1.10.0+ds-2) ... 118s Preparing to unpack .../10-libjson-glib-1.0-0_1.10.0+ds-3_ppc64el.deb ... 118s Unpacking libjson-glib-1.0-0:ppc64el (1.10.0+ds-3) over (1.10.0+ds-2) ... 118s Preparing to unpack .../11-libutempter0_1.2.1-4_ppc64el.deb ... 118s Unpacking libutempter0:ppc64el (1.2.1-4) over (1.2.1-3build1) ... 118s Setting up libnewt0.52:ppc64el (0.52.24-2ubuntu4) ... 118s Setting up libutempter0:ppc64el (1.2.1-4) ... 118s Setting up whiptail (0.52.24-2ubuntu4) ... 118s Setting up libjson-glib-1.0-common (1.10.0+ds-3) ... 118s Setting up libbpfcc:ppc64el (0.30.0+ds-1ubuntu5) ... 118s Setting up python3.13-gdbm (3.13.0-2) ... 118s Setting up libpython3-stdlib:ppc64el (3.12.7-1) ... 118s Setting up bpftrace (0.21.2-2ubuntu2) ... 118s Setting up python3 (3.12.7-1) ... 118s Setting up python3-newt:ppc64el (0.52.24-2ubuntu4) ... 118s Setting up libjson-glib-1.0-0:ppc64el (1.10.0+ds-3) ... 118s Setting up python3-bpfcc (0.30.0+ds-1ubuntu5) ... 118s Setting up python3-gdbm:ppc64el (3.12.7-1) ... 118s Setting up bpfcc-tools (0.30.0+ds-1ubuntu5) ... 118s Processing triggers for man-db (2.12.1-3) ... 120s Processing triggers for libc-bin (2.40-1ubuntu3) ... 120s Reading package lists... 120s Building dependency tree... 120s Reading state information... 120s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 121s Hit:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease 121s Hit:2 http://ftpmaster.internal/ubuntu plucky InRelease 121s Hit:3 http://ftpmaster.internal/ubuntu plucky-updates InRelease 121s Hit:4 http://ftpmaster.internal/ubuntu plucky-security InRelease 122s Reading package lists... 122s Reading package lists... 122s Building dependency tree... 122s Reading state information... 122s Calculating upgrade... 123s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 123s Reading package lists... 123s Building dependency tree... 123s Reading state information... 123s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 126s autopkgtest [02:51:52]: testbed running kernel: Linux 6.11.0-8-generic #8-Ubuntu SMP Mon Sep 16 13:49:23 UTC 2024 126s autopkgtest [02:51:52]: @@@@@@@@@@@@@@@@@@@@ apt-source tiddit 128s Get:1 http://ftpmaster.internal/ubuntu plucky/universe tiddit 3.6.1+dfsg-1build1 (dsc) [2105 B] 128s Get:2 http://ftpmaster.internal/ubuntu plucky/universe tiddit 3.6.1+dfsg-1build1 (tar) [19.5 kB] 128s Get:3 http://ftpmaster.internal/ubuntu plucky/universe tiddit 3.6.1+dfsg-1build1 (diff) [1732 kB] 128s gpgv: Signature made Wed Apr 10 17:41:17 2024 UTC 128s gpgv: using RSA key 25E3FF2D7F469DBE7D0D4E50AFCFEC8E669CE1C2 128s gpgv: Can't check signature: No public key 128s dpkg-source: warning: cannot verify inline signature for ./tiddit_3.6.1+dfsg-1build1.dsc: no acceptable signature found 128s autopkgtest [02:51:54]: testing package tiddit version 3.6.1+dfsg-1build1 129s autopkgtest [02:51:55]: build not needed 130s autopkgtest [02:51:56]: test run-unit-test: preparing testbed 133s Reading package lists... 133s Building dependency tree... 133s Reading state information... 134s Starting pkgProblemResolver with broken count: 0 134s Starting 2 pkgProblemResolver with broken count: 0 134s Done 134s The following additional packages will be installed: 134s libblas3 libdeflate0 libgfortran5 libhts3t64 libhtscodecs2 liblapack3 134s python3-joblib python3-numpy python3-pysam samtools tiddit 134s Suggested packages: 134s python-joblib-doc gcc gfortran python-numpy-doc python3-dev python3-pytest 134s cwltool 134s Recommended packages: 134s python3-pytest python3-simplejson python3-psutil 134s The following NEW packages will be installed: 134s autopkgtest-satdep libblas3 libdeflate0 libgfortran5 libhts3t64 134s libhtscodecs2 liblapack3 python3-joblib python3-numpy python3-pysam samtools 134s tiddit 134s 0 upgraded, 12 newly installed, 0 to remove and 0 not upgraded. 134s Need to get 13.8 MB/13.8 MB of archives. 134s After this operation, 78.4 MB of additional disk space will be used. 134s Get:1 /tmp/autopkgtest.fOOx17/1-autopkgtest-satdep.deb autopkgtest-satdep ppc64el 0 [716 B] 134s Get:2 http://ftpmaster.internal/ubuntu plucky/main ppc64el libblas3 ppc64el 3.12.0-3build2 [222 kB] 134s Get:3 http://ftpmaster.internal/ubuntu plucky/main ppc64el libdeflate0 ppc64el 1.22-1 [63.3 kB] 134s Get:4 http://ftpmaster.internal/ubuntu plucky/main ppc64el libgfortran5 ppc64el 14.2.0-8ubuntu1 [571 kB] 134s Get:5 http://ftpmaster.internal/ubuntu plucky/universe ppc64el libhtscodecs2 ppc64el 1.6.1-1 [113 kB] 134s Get:6 http://ftpmaster.internal/ubuntu plucky/universe ppc64el libhts3t64 ppc64el 1.20+ds-1 [567 kB] 135s Get:7 http://ftpmaster.internal/ubuntu plucky/main ppc64el liblapack3 ppc64el 3.12.0-3build2 [2806 kB] 135s Get:8 http://ftpmaster.internal/ubuntu plucky/universe ppc64el python3-joblib all 1.3.2-5 [206 kB] 135s Get:9 http://ftpmaster.internal/ubuntu plucky/main ppc64el python3-numpy ppc64el 1:1.26.4+ds-11build1 [4434 kB] 135s Get:10 http://ftpmaster.internal/ubuntu plucky/universe ppc64el python3-pysam ppc64el 0.22.1+ds-2 [3818 kB] 136s Get:11 http://ftpmaster.internal/ubuntu plucky/universe ppc64el samtools ppc64el 1.20-3 [676 kB] 136s Get:12 http://ftpmaster.internal/ubuntu plucky/universe ppc64el tiddit ppc64el 3.6.1+dfsg-1build1 [358 kB] 136s Fetched 13.8 MB in 2s (7971 kB/s) 136s Selecting previously unselected package libblas3:ppc64el. 136s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 73775 files and directories currently installed.) 136s Preparing to unpack .../00-libblas3_3.12.0-3build2_ppc64el.deb ... 136s Unpacking libblas3:ppc64el (3.12.0-3build2) ... 136s Selecting previously unselected package libdeflate0:ppc64el. 136s Preparing to unpack .../01-libdeflate0_1.22-1_ppc64el.deb ... 136s Unpacking libdeflate0:ppc64el (1.22-1) ... 136s Selecting previously unselected package libgfortran5:ppc64el. 136s Preparing to unpack .../02-libgfortran5_14.2.0-8ubuntu1_ppc64el.deb ... 136s Unpacking libgfortran5:ppc64el (14.2.0-8ubuntu1) ... 136s Selecting previously unselected package libhtscodecs2:ppc64el. 136s Preparing to unpack .../03-libhtscodecs2_1.6.1-1_ppc64el.deb ... 136s Unpacking libhtscodecs2:ppc64el (1.6.1-1) ... 136s Selecting previously unselected package libhts3t64:ppc64el. 136s Preparing to unpack .../04-libhts3t64_1.20+ds-1_ppc64el.deb ... 136s Unpacking libhts3t64:ppc64el (1.20+ds-1) ... 136s Selecting previously unselected package liblapack3:ppc64el. 136s Preparing to unpack .../05-liblapack3_3.12.0-3build2_ppc64el.deb ... 136s Unpacking liblapack3:ppc64el (3.12.0-3build2) ... 136s Selecting previously unselected package python3-joblib. 136s Preparing to unpack .../06-python3-joblib_1.3.2-5_all.deb ... 136s Unpacking python3-joblib (1.3.2-5) ... 136s Selecting previously unselected package python3-numpy. 136s Preparing to unpack .../07-python3-numpy_1%3a1.26.4+ds-11build1_ppc64el.deb ... 136s Unpacking python3-numpy (1:1.26.4+ds-11build1) ... 136s Selecting previously unselected package python3-pysam. 136s Preparing to unpack .../08-python3-pysam_0.22.1+ds-2_ppc64el.deb ... 136s Unpacking python3-pysam (0.22.1+ds-2) ... 137s Selecting previously unselected package samtools. 137s Preparing to unpack .../09-samtools_1.20-3_ppc64el.deb ... 137s Unpacking samtools (1.20-3) ... 137s Selecting previously unselected package tiddit. 137s Preparing to unpack .../10-tiddit_3.6.1+dfsg-1build1_ppc64el.deb ... 137s Unpacking tiddit (3.6.1+dfsg-1build1) ... 137s Selecting previously unselected package autopkgtest-satdep. 137s Preparing to unpack .../11-1-autopkgtest-satdep.deb ... 137s Unpacking autopkgtest-satdep (0) ... 137s Setting up libhtscodecs2:ppc64el (1.6.1-1) ... 137s Setting up python3-joblib (1.3.2-5) ... 137s Setting up libdeflate0:ppc64el (1.22-1) ... 137s Setting up libblas3:ppc64el (3.12.0-3build2) ... 137s update-alternatives: using /usr/lib/powerpc64le-linux-gnu/blas/libblas.so.3 to provide /usr/lib/powerpc64le-linux-gnu/libblas.so.3 (libblas.so.3-powerpc64le-linux-gnu) in auto mode 137s Setting up libgfortran5:ppc64el (14.2.0-8ubuntu1) ... 137s Setting up libhts3t64:ppc64el (1.20+ds-1) ... 137s Setting up liblapack3:ppc64el (3.12.0-3build2) ... 137s update-alternatives: using /usr/lib/powerpc64le-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/powerpc64le-linux-gnu/liblapack.so.3 (liblapack.so.3-powerpc64le-linux-gnu) in auto mode 137s Setting up python3-pysam (0.22.1+ds-2) ... 137s Setting up samtools (1.20-3) ... 137s Setting up python3-numpy (1:1.26.4+ds-11build1) ... 139s Setting up tiddit (3.6.1+dfsg-1build1) ... 140s Setting up autopkgtest-satdep (0) ... 140s Processing triggers for man-db (2.12.1-3) ... 140s Processing triggers for libc-bin (2.40-1ubuntu3) ... 143s (Reading database ... 75327 files and directories currently installed.) 143s Removing autopkgtest-satdep (0) ... 143s autopkgtest [02:52:09]: test run-unit-test: [----------------------- 144s Test 1 144s + echo 'Test 1' 144s + tiddit --cov --bam normal.bam -o test1 161s + tiddit --cov -w --bam normal.bam -o test1 172s + for f in test1.* 172s + '[' -s test1.bed ']' 172s + cat test1.bed 172s + tail -20 173s hs37d5 35468001 35468501 0.0 173s hs37d5 35468501 35469001 0.0 173s hs37d5 35469001 35469501 0.0 173s hs37d5 35469501 35470001 0.0 173s hs37d5 35470001 35470501 0.0 173s hs37d5 35470501 35471001 0.0 173s hs37d5 35471001 35471501 0.0 173s hs37d5 35471501 35472001 0.0 173s hs37d5 35472001 35472501 0.0 173s hs37d5 35472501 35473001 0.0 173s hs37d5 35473001 35473501 0.0 173s hs37d5 35473501 35474001 0.0 173s hs37d5 35474001 35474501 0.0 173s hs37d5 35474501 35475001 0.0 173s hs37d5 35475001 35475501 0.0 173s hs37d5 35475501 35476001 0.0 173s hs37d5 35476001 35476501 0.0 173s hs37d5 35476501 35477001 0.0 173s hs37d5 35477001 35477501 0.0 173s hs37d5 35477501 35477943 0.0 173s + for f in test1.* 173s + '[' -s test1.wig ']' 173s + cat test1.wig 173s + tail -20 173s + rm -f ./test1.bed ./test1.wig 173s 0.0 173s 0.0 173s 0.0 173s 0.0 173s 0.0 173s 0.0 173s 0.0 173s 0.0 173s 0.0 173s 0.0 173s 0.0 173s 0.0 173s 0.0 173s 0.0 173s 0.0 173s 0.0 173s 0.0 173s 0.0 173s 0.0 173s 0.0 173s + echo PASS 173s PASS 173s Test 2 173s + echo 'Test 2' 173s + tiddit --cov --bam normal.bam -o test2 190s + tiddit --cov -w --bam tumor.bam -o test2 202s + for f in test2.* 202s + '[' -s test2.bed ']' 202s + cat test2.bed 202s + tail -20 202s hs37d5 35468001 35468501 0.0 202s hs37d5 35468501 35469001 0.0 202s hs37d5 35469001 35469501 0.0 202s hs37d5 35469501 35470001 0.0 202s hs37d5 35470001 35470501 0.0 202s hs37d5 35470501 35471001 0.0 202s hs37d5 35471001 35471501 0.0 202s hs37d5 35471501 35472001 0.0 202s hs37d5 35472001 35472501 0.0 202s hs37d5 35472501 35473001 0.0 202s hs37d5 35473001 35473501 0.0 202s hs37d5 35473501 35474001 0.0 202s hs37d5 35474001 35474501 0.0 202s hs37d5 35474501 35475001 0.0 202s hs37d5 35475001 35475501 0.0 202s hs37d5 35475501 35476001 0.0 202s hs37d5 35476001 35476501 0.0 202s hs37d5 35476501 35477001 0.0 202s hs37d5 35477001 35477501 0.0 202s hs37d5 35477501 35477943 0.0 202s + for f in test2.* 202s + '[' -s test2.wig ']' 202s + cat test2.wig 202s + tail -20 202s 0.0 202s 0.0 202s 0.0 202s 0.0 202s 0.0 202s 0.0 202s 0.0 202s 0.0 202s 0.0 202s 0.0 202s 0.0 202s 0.0 202s 0.0 202s 0.0 202s 0.0 202s 0.0 202s 0.0 202s 0.0 202s 0.0 202s 0.0 202s + rm -f ./test2.bed ./test2.wig 202s + echo PASS 202s PASS 203s autopkgtest [02:53:09]: test run-unit-test: -----------------------] 203s run-unit-test PASS 203s autopkgtest [02:53:09]: test run-unit-test: - - - - - - - - - - results - - - - - - - - - - 203s autopkgtest [02:53:09]: @@@@@@@@@@@@@@@@@@@@ summary 203s run-unit-test PASS 207s nova [W] Using flock in prodstack6-ppc64el 207s flock: timeout while waiting to get lock 207s Creating nova instance adt-plucky-ppc64el-tiddit-20241114-024946-juju-7f2275-prod-proposed-migration-environment-20-8b6dd9bf-3ec8-4eb3-acb4-eeb8d6172902 from image adt/ubuntu-plucky-ppc64el-server-20241113.img (UUID 0c5715b6-5cca-4485-b8bf-b85dfd917a5f)...