0s autopkgtest [02:16:57]: starting date and time: 2024-11-14 02:16:57+0000 0s autopkgtest [02:16:57]: git checkout: 6f3be7a8 Fix armhf LXD image generation for plucky 0s autopkgtest [02:16:57]: host juju-7f2275-prod-proposed-migration-environment-15; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.9d6lsm77/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:python3-defaults,src:python3-stdlib-extensions --apt-upgrade seqmagick --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 '--env=ADT_TEST_TRIGGERS=python3-defaults/3.12.7-1 python3-stdlib-extensions/3.12.7-1' -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest-ppc64el --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-15@bos03-ppc64el-28.secgroup --name adt-plucky-ppc64el-seqmagick-20241114-021657-juju-7f2275-prod-proposed-migration-environment-15-c8567e08-9eae-4004-94b8-701fd7db8ad5 --image adt/ubuntu-plucky-ppc64el-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-15 --net-id=net_prod-proposed-migration-ppc64el -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,keyserver.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/ 134s autopkgtest [02:19:11]: testbed dpkg architecture: ppc64el 134s autopkgtest [02:19:11]: testbed apt version: 2.9.8 134s autopkgtest [02:19:11]: @@@@@@@@@@@@@@@@@@@@ test bed setup 135s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease [73.9 kB] 135s Get:2 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse Sources [17.2 kB] 136s Get:3 http://ftpmaster.internal/ubuntu plucky-proposed/universe Sources [990 kB] 136s Get:4 http://ftpmaster.internal/ubuntu plucky-proposed/restricted Sources [7016 B] 136s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/main Sources [99.6 kB] 136s Get:6 http://ftpmaster.internal/ubuntu plucky-proposed/main ppc64el Packages [109 kB] 136s Get:7 http://ftpmaster.internal/ubuntu plucky-proposed/universe ppc64el Packages [692 kB] 136s Get:8 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse ppc64el Packages [20.8 kB] 136s Fetched 2009 kB in 1s (1930 kB/s) 136s Reading package lists... 139s Reading package lists... 139s Building dependency tree... 139s Reading state information... 139s Calculating upgrade... 139s The following NEW packages will be installed: 139s python3.13-gdbm 139s The following packages will be upgraded: 139s bpfcc-tools bpftrace libbpfcc libgnutls30t64 libjson-glib-1.0-0 139s libjson-glib-1.0-common libnewt0.52 libpython3-stdlib libutempter0 python3 139s python3-bpfcc python3-gdbm python3-minimal python3-newt whiptail 139s 15 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. 139s Need to get 4700 kB of archives. 139s After this operation, 215 kB of additional disk space will be used. 139s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed/main ppc64el python3-minimal ppc64el 3.12.7-1 [27.4 kB] 139s Get:2 http://ftpmaster.internal/ubuntu plucky-proposed/main ppc64el python3 ppc64el 3.12.7-1 [24.0 kB] 139s Get:3 http://ftpmaster.internal/ubuntu plucky-proposed/main ppc64el libpython3-stdlib ppc64el 3.12.7-1 [10.0 kB] 139s Get:4 http://ftpmaster.internal/ubuntu plucky/main ppc64el libgnutls30t64 ppc64el 3.8.8-2ubuntu1 [1072 kB] 140s Get:5 http://ftpmaster.internal/ubuntu plucky/main ppc64el python3-newt ppc64el 0.52.24-2ubuntu4 [21.8 kB] 140s Get:6 http://ftpmaster.internal/ubuntu plucky/main ppc64el libnewt0.52 ppc64el 0.52.24-2ubuntu4 [62.1 kB] 140s Get:7 http://ftpmaster.internal/ubuntu plucky/main ppc64el whiptail ppc64el 0.52.24-2ubuntu4 [19.5 kB] 140s Get:8 http://ftpmaster.internal/ubuntu plucky/main ppc64el python3.13-gdbm ppc64el 3.13.0-2 [31.5 kB] 140s Get:9 http://ftpmaster.internal/ubuntu plucky-proposed/main ppc64el python3-gdbm ppc64el 3.12.7-1 [8640 B] 140s Get:10 http://ftpmaster.internal/ubuntu plucky/main ppc64el libbpfcc ppc64el 0.30.0+ds-1ubuntu5 [696 kB] 140s Get:11 http://ftpmaster.internal/ubuntu plucky/main ppc64el python3-bpfcc all 0.30.0+ds-1ubuntu5 [40.4 kB] 140s Get:12 http://ftpmaster.internal/ubuntu plucky/main ppc64el bpfcc-tools all 0.30.0+ds-1ubuntu5 [697 kB] 140s Get:13 http://ftpmaster.internal/ubuntu plucky/main ppc64el bpftrace ppc64el 0.21.2-2ubuntu2 [1898 kB] 140s Get:14 http://ftpmaster.internal/ubuntu plucky/main ppc64el libjson-glib-1.0-common all 1.10.0+ds-3 [5586 B] 140s Get:15 http://ftpmaster.internal/ubuntu plucky/main ppc64el libjson-glib-1.0-0 ppc64el 1.10.0+ds-3 [76.0 kB] 140s Get:16 http://ftpmaster.internal/ubuntu plucky/main ppc64el libutempter0 ppc64el 1.2.1-4 [9850 B] 141s Fetched 4700 kB in 1s (4342 kB/s) 141s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 73767 files and directories currently installed.) 141s Preparing to unpack .../python3-minimal_3.12.7-1_ppc64el.deb ... 141s Unpacking python3-minimal (3.12.7-1) over (3.12.6-0ubuntu1) ... 141s Setting up python3-minimal (3.12.7-1) ... 141s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 73767 files and directories currently installed.) 141s Preparing to unpack .../python3_3.12.7-1_ppc64el.deb ... 141s Unpacking python3 (3.12.7-1) over (3.12.6-0ubuntu1) ... 141s Preparing to unpack .../libpython3-stdlib_3.12.7-1_ppc64el.deb ... 141s Unpacking libpython3-stdlib:ppc64el (3.12.7-1) over (3.12.6-0ubuntu1) ... 141s Preparing to unpack .../libgnutls30t64_3.8.8-2ubuntu1_ppc64el.deb ... 141s Unpacking libgnutls30t64:ppc64el (3.8.8-2ubuntu1) over (3.8.6-2ubuntu1) ... 141s Setting up libgnutls30t64:ppc64el (3.8.8-2ubuntu1) ... 141s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 73767 files and directories currently installed.) 141s Preparing to unpack .../00-python3-newt_0.52.24-2ubuntu4_ppc64el.deb ... 141s Unpacking python3-newt:ppc64el (0.52.24-2ubuntu4) over (0.52.24-2ubuntu3) ... 141s Preparing to unpack .../01-libnewt0.52_0.52.24-2ubuntu4_ppc64el.deb ... 141s Unpacking libnewt0.52:ppc64el (0.52.24-2ubuntu4) over (0.52.24-2ubuntu3) ... 141s Preparing to unpack .../02-whiptail_0.52.24-2ubuntu4_ppc64el.deb ... 141s Unpacking whiptail (0.52.24-2ubuntu4) over (0.52.24-2ubuntu3) ... 142s Selecting previously unselected package python3.13-gdbm. 142s Preparing to unpack .../03-python3.13-gdbm_3.13.0-2_ppc64el.deb ... 142s Unpacking python3.13-gdbm (3.13.0-2) ... 142s Preparing to unpack .../04-python3-gdbm_3.12.7-1_ppc64el.deb ... 142s Unpacking python3-gdbm:ppc64el (3.12.7-1) over (3.12.6-1ubuntu1) ... 142s Preparing to unpack .../05-libbpfcc_0.30.0+ds-1ubuntu5_ppc64el.deb ... 142s Unpacking libbpfcc:ppc64el (0.30.0+ds-1ubuntu5) over (0.30.0+ds-1ubuntu4) ... 142s Preparing to unpack .../06-python3-bpfcc_0.30.0+ds-1ubuntu5_all.deb ... 142s Unpacking python3-bpfcc (0.30.0+ds-1ubuntu5) over (0.30.0+ds-1ubuntu4) ... 142s Preparing to unpack .../07-bpfcc-tools_0.30.0+ds-1ubuntu5_all.deb ... 142s Unpacking bpfcc-tools (0.30.0+ds-1ubuntu5) over (0.30.0+ds-1ubuntu4) ... 142s Preparing to unpack .../08-bpftrace_0.21.2-2ubuntu2_ppc64el.deb ... 142s Unpacking bpftrace (0.21.2-2ubuntu2) over (0.21.2-2) ... 142s Preparing to unpack .../09-libjson-glib-1.0-common_1.10.0+ds-3_all.deb ... 142s Unpacking libjson-glib-1.0-common (1.10.0+ds-3) over (1.10.0+ds-2) ... 142s Preparing to unpack .../10-libjson-glib-1.0-0_1.10.0+ds-3_ppc64el.deb ... 142s Unpacking libjson-glib-1.0-0:ppc64el (1.10.0+ds-3) over (1.10.0+ds-2) ... 142s Preparing to unpack .../11-libutempter0_1.2.1-4_ppc64el.deb ... 142s Unpacking libutempter0:ppc64el (1.2.1-4) over (1.2.1-3build1) ... 142s Setting up libnewt0.52:ppc64el (0.52.24-2ubuntu4) ... 142s Setting up libutempter0:ppc64el (1.2.1-4) ... 142s Setting up whiptail (0.52.24-2ubuntu4) ... 142s Setting up libjson-glib-1.0-common (1.10.0+ds-3) ... 142s Setting up libbpfcc:ppc64el (0.30.0+ds-1ubuntu5) ... 142s Setting up python3.13-gdbm (3.13.0-2) ... 142s Setting up libpython3-stdlib:ppc64el (3.12.7-1) ... 142s Setting up bpftrace (0.21.2-2ubuntu2) ... 142s Setting up python3 (3.12.7-1) ... 142s Setting up python3-newt:ppc64el (0.52.24-2ubuntu4) ... 142s Setting up libjson-glib-1.0-0:ppc64el (1.10.0+ds-3) ... 142s Setting up python3-bpfcc (0.30.0+ds-1ubuntu5) ... 143s Setting up python3-gdbm:ppc64el (3.12.7-1) ... 143s Setting up bpfcc-tools (0.30.0+ds-1ubuntu5) ... 143s Processing triggers for man-db (2.12.1-3) ... 144s Processing triggers for libc-bin (2.40-1ubuntu3) ... 144s Reading package lists... 144s Building dependency tree... 144s Reading state information... 145s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 145s Hit:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease 145s Hit:2 http://ftpmaster.internal/ubuntu plucky InRelease 145s Hit:3 http://ftpmaster.internal/ubuntu plucky-updates InRelease 145s Hit:4 http://ftpmaster.internal/ubuntu plucky-security InRelease 146s Reading package lists... 146s Reading package lists... 146s Building dependency tree... 146s Reading state information... 147s Calculating upgrade... 147s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 147s Reading package lists... 147s Building dependency tree... 147s Reading state information... 147s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 150s autopkgtest [02:19:27]: testbed running kernel: Linux 6.11.0-8-generic #8-Ubuntu SMP Mon Sep 16 13:49:23 UTC 2024 150s autopkgtest [02:19:27]: @@@@@@@@@@@@@@@@@@@@ apt-source seqmagick 152s Get:1 http://ftpmaster.internal/ubuntu plucky/universe seqmagick 0.8.6-3 (dsc) [2262 B] 152s Get:2 http://ftpmaster.internal/ubuntu plucky/universe seqmagick 0.8.6-3 (tar) [665 kB] 152s Get:3 http://ftpmaster.internal/ubuntu plucky/universe seqmagick 0.8.6-3 (diff) [6012 B] 152s gpgv: Signature made Tue Aug 6 20:16:33 2024 UTC 152s gpgv: using RSA key 8F91B227C7D6F2B1948C8236793CF67E8F0D11DA 152s gpgv: issuer "emollier@debian.org" 152s gpgv: Can't check signature: No public key 152s dpkg-source: warning: cannot verify inline signature for ./seqmagick_0.8.6-3.dsc: no acceptable signature found 153s autopkgtest [02:19:30]: testing package seqmagick version 0.8.6-3 153s autopkgtest [02:19:30]: build not needed 154s autopkgtest [02:19:31]: test run-unit-test: preparing testbed 157s Reading package lists... 157s Building dependency tree... 157s Reading state information... 157s Starting pkgProblemResolver with broken count: 0 157s Starting 2 pkgProblemResolver with broken count: 0 157s Done 158s The following additional packages will be installed: 158s fontconfig-config fonts-dejavu-core fonts-dejavu-mono fonts-urw-base35 158s libblas3 libcairo2 libdeflate0 libfontconfig1 libfontenc1 libgfortran5 158s libgomp1 libgraphite2-3 libharfbuzz0b libimagequant0 libjbig0 libjpeg-turbo8 158s libjpeg8 liblapack3 liblcms2-2 liblerc4 libopenjp2-7 libpixman-1-0 libraqm0 158s libsharpyuv0 libtiff6 libwebp7 libwebpdemux2 libwebpmux3 libxcb-render0 158s libxcb-shm0 libxrender1 python3-biopython python3-cairo python3-freetype 158s python3-numpy python3-pil python3-pygtrie python3-reportlab 158s python3-rlpycairo seqmagick sgml-base w3c-sgml-lib x11-common 158s xfonts-encodings xfonts-utils xml-core 158s Suggested packages: 158s fonts-freefont-otf | fonts-freefont-ttf fonts-texgyre liblcms2-utils 158s python3-tk bwa clustalo clustalw dialign dssp emboss fasttree mafft muscle3 158s phylip phyml prank probcons python3-mysqldb python3-matplotlib python3-mmtf 158s python3-rdflib python3-psycopg2 python3-scipy raxml samtools t-coffee wise 158s gcc gfortran python-numpy-doc python3-dev python3-pytest python-pil-doc 158s python-pygtrie-doc pdf-viewer python3-egenix-mxtexttools 158s python-reportlab-doc rl-accel rl-renderpm sgml-base-doc debhelper 158s Recommended packages: 158s python-biopython-doc ncbi-blast+ python3-olefile fonts-dejavu-extra 158s The following NEW packages will be installed: 158s autopkgtest-satdep fontconfig-config fonts-dejavu-core fonts-dejavu-mono 158s fonts-urw-base35 libblas3 libcairo2 libdeflate0 libfontconfig1 libfontenc1 158s libgfortran5 libgomp1 libgraphite2-3 libharfbuzz0b libimagequant0 libjbig0 158s libjpeg-turbo8 libjpeg8 liblapack3 liblcms2-2 liblerc4 libopenjp2-7 158s libpixman-1-0 libraqm0 libsharpyuv0 libtiff6 libwebp7 libwebpdemux2 158s libwebpmux3 libxcb-render0 libxcb-shm0 libxrender1 python3-biopython 158s python3-cairo python3-freetype python3-numpy python3-pil python3-pygtrie 158s python3-reportlab python3-rlpycairo seqmagick sgml-base w3c-sgml-lib 158s x11-common xfonts-encodings xfonts-utils xml-core 158s 0 upgraded, 47 newly installed, 0 to remove and 0 not upgraded. 158s Need to get 29.1 MB/29.1 MB of archives. 158s After this operation, 92.4 MB of additional disk space will be used. 158s Get:1 /tmp/autopkgtest.XY56JQ/1-autopkgtest-satdep.deb autopkgtest-satdep ppc64el 0 [712 B] 158s Get:2 http://ftpmaster.internal/ubuntu plucky/main ppc64el sgml-base all 1.31 [11.4 kB] 158s Get:3 http://ftpmaster.internal/ubuntu plucky/main ppc64el fonts-dejavu-mono all 2.37-8 [502 kB] 158s Get:4 http://ftpmaster.internal/ubuntu plucky/main ppc64el fonts-dejavu-core all 2.37-8 [835 kB] 159s Get:5 http://ftpmaster.internal/ubuntu plucky/main ppc64el libfontenc1 ppc64el 1:1.1.8-1build1 [15.8 kB] 159s Get:6 http://ftpmaster.internal/ubuntu plucky/main ppc64el x11-common all 1:7.7+23ubuntu3 [21.7 kB] 159s Get:7 http://ftpmaster.internal/ubuntu plucky/main ppc64el xfonts-encodings all 1:1.0.5-0ubuntu2 [578 kB] 159s Get:8 http://ftpmaster.internal/ubuntu plucky/main ppc64el xfonts-utils ppc64el 1:7.7+7 [114 kB] 159s Get:9 http://ftpmaster.internal/ubuntu plucky/main ppc64el fonts-urw-base35 all 20200910-8 [11.0 MB] 161s Get:10 http://ftpmaster.internal/ubuntu plucky/main ppc64el fontconfig-config ppc64el 2.15.0-1.1ubuntu2 [37.4 kB] 161s Get:11 http://ftpmaster.internal/ubuntu plucky/main ppc64el libblas3 ppc64el 3.12.0-3build2 [222 kB] 161s Get:12 http://ftpmaster.internal/ubuntu plucky/main ppc64el libfontconfig1 ppc64el 2.15.0-1.1ubuntu2 [190 kB] 161s Get:13 http://ftpmaster.internal/ubuntu plucky/main ppc64el libpixman-1-0 ppc64el 0.44.0-3 [334 kB] 161s Get:14 http://ftpmaster.internal/ubuntu plucky/main ppc64el libxcb-render0 ppc64el 1.17.0-2 [17.2 kB] 161s Get:15 http://ftpmaster.internal/ubuntu plucky/main ppc64el libxcb-shm0 ppc64el 1.17.0-2 [5980 B] 161s Get:16 http://ftpmaster.internal/ubuntu plucky/main ppc64el libxrender1 ppc64el 1:0.9.10-1.1build1 [23.1 kB] 161s Get:17 http://ftpmaster.internal/ubuntu plucky/main ppc64el libcairo2 ppc64el 1.18.2-2 [747 kB] 161s Get:18 http://ftpmaster.internal/ubuntu plucky/main ppc64el libdeflate0 ppc64el 1.22-1 [63.3 kB] 161s Get:19 http://ftpmaster.internal/ubuntu plucky/main ppc64el libgfortran5 ppc64el 14.2.0-8ubuntu1 [571 kB] 161s Get:20 http://ftpmaster.internal/ubuntu plucky/main ppc64el libgomp1 ppc64el 14.2.0-8ubuntu1 [161 kB] 161s Get:21 http://ftpmaster.internal/ubuntu plucky/main ppc64el libgraphite2-3 ppc64el 1.3.14-2ubuntu1 [84.6 kB] 161s Get:22 http://ftpmaster.internal/ubuntu plucky/main ppc64el libharfbuzz0b ppc64el 10.0.1-1 [596 kB] 161s Get:23 http://ftpmaster.internal/ubuntu plucky/main ppc64el libimagequant0 ppc64el 2.18.0-1build1 [43.2 kB] 161s Get:24 http://ftpmaster.internal/ubuntu plucky/main ppc64el libjpeg-turbo8 ppc64el 2.1.5-2ubuntu2 [219 kB] 161s Get:25 http://ftpmaster.internal/ubuntu plucky/main ppc64el libjpeg8 ppc64el 8c-2ubuntu11 [2148 B] 161s Get:26 http://ftpmaster.internal/ubuntu plucky/main ppc64el liblapack3 ppc64el 3.12.0-3build2 [2806 kB] 162s Get:27 http://ftpmaster.internal/ubuntu plucky/main ppc64el liblcms2-2 ppc64el 2.16-2 [243 kB] 162s Get:28 http://ftpmaster.internal/ubuntu plucky/main ppc64el liblerc4 ppc64el 4.0.0+ds-4ubuntu2 [270 kB] 162s Get:29 http://ftpmaster.internal/ubuntu plucky/main ppc64el libraqm0 ppc64el 0.10.1-1build1 [19.4 kB] 162s Get:30 http://ftpmaster.internal/ubuntu plucky/main ppc64el libsharpyuv0 ppc64el 1.4.0-0.1 [22.0 kB] 162s Get:31 http://ftpmaster.internal/ubuntu plucky/main ppc64el libjbig0 ppc64el 2.1-6.1ubuntu2 [35.9 kB] 162s Get:32 http://ftpmaster.internal/ubuntu plucky/main ppc64el libwebp7 ppc64el 1.4.0-0.1 [309 kB] 162s Get:33 http://ftpmaster.internal/ubuntu plucky/main ppc64el libtiff6 ppc64el 4.5.1+git230720-4ubuntu4 [272 kB] 162s Get:34 http://ftpmaster.internal/ubuntu plucky/main ppc64el libwebpdemux2 ppc64el 1.4.0-0.1 [14.1 kB] 162s Get:35 http://ftpmaster.internal/ubuntu plucky/main ppc64el libwebpmux3 ppc64el 1.4.0-0.1 [31.4 kB] 162s Get:36 http://ftpmaster.internal/ubuntu plucky/main ppc64el python3-numpy ppc64el 1:1.26.4+ds-11build1 [4434 kB] 162s Get:37 http://ftpmaster.internal/ubuntu plucky/main ppc64el libopenjp2-7 ppc64el 2.5.0-2ubuntu1 [246 kB] 162s Get:38 http://ftpmaster.internal/ubuntu plucky/main ppc64el python3-pil ppc64el 10.4.0-1ubuntu1 [581 kB] 162s Get:39 http://ftpmaster.internal/ubuntu plucky/main ppc64el python3-cairo ppc64el 1.26.1-2 [129 kB] 162s Get:40 http://ftpmaster.internal/ubuntu plucky/universe ppc64el python3-freetype all 2.5.1-1 [92.3 kB] 162s Get:41 http://ftpmaster.internal/ubuntu plucky/universe ppc64el python3-rlpycairo all 0.3.0-3 [9130 B] 162s Get:42 http://ftpmaster.internal/ubuntu plucky/universe ppc64el python3-reportlab all 4.2.5-1 [1107 kB] 162s Get:43 http://ftpmaster.internal/ubuntu plucky/main ppc64el xml-core all 0.19 [20.3 kB] 162s Get:44 http://ftpmaster.internal/ubuntu plucky/universe ppc64el w3c-sgml-lib all 1.3-3 [280 kB] 162s Get:45 http://ftpmaster.internal/ubuntu plucky/universe ppc64el python3-biopython ppc64el 1.84+dfsg-4 [1738 kB] 162s Get:46 http://ftpmaster.internal/ubuntu plucky/universe ppc64el python3-pygtrie all 2.2-2 [16.0 kB] 162s Get:47 http://ftpmaster.internal/ubuntu plucky/universe ppc64el seqmagick all 0.8.6-3 [38.6 kB] 163s Fetched 29.1 MB in 4s (6514 kB/s) 163s Selecting previously unselected package sgml-base. 163s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 73775 files and directories currently installed.) 163s Preparing to unpack .../00-sgml-base_1.31_all.deb ... 163s Unpacking sgml-base (1.31) ... 163s Selecting previously unselected package fonts-dejavu-mono. 163s Preparing to unpack .../01-fonts-dejavu-mono_2.37-8_all.deb ... 163s Unpacking fonts-dejavu-mono (2.37-8) ... 163s Selecting previously unselected package fonts-dejavu-core. 163s Preparing to unpack .../02-fonts-dejavu-core_2.37-8_all.deb ... 163s Unpacking fonts-dejavu-core (2.37-8) ... 163s Selecting previously unselected package libfontenc1:ppc64el. 163s Preparing to unpack .../03-libfontenc1_1%3a1.1.8-1build1_ppc64el.deb ... 163s Unpacking libfontenc1:ppc64el (1:1.1.8-1build1) ... 163s Selecting previously unselected package x11-common. 163s Preparing to unpack .../04-x11-common_1%3a7.7+23ubuntu3_all.deb ... 163s Unpacking x11-common (1:7.7+23ubuntu3) ... 163s Selecting previously unselected package xfonts-encodings. 163s Preparing to unpack .../05-xfonts-encodings_1%3a1.0.5-0ubuntu2_all.deb ... 163s Unpacking xfonts-encodings (1:1.0.5-0ubuntu2) ... 163s Selecting previously unselected package xfonts-utils. 163s Preparing to unpack .../06-xfonts-utils_1%3a7.7+7_ppc64el.deb ... 163s Unpacking xfonts-utils (1:7.7+7) ... 163s Selecting previously unselected package fonts-urw-base35. 163s Preparing to unpack .../07-fonts-urw-base35_20200910-8_all.deb ... 163s Unpacking fonts-urw-base35 (20200910-8) ... 163s Selecting previously unselected package fontconfig-config. 163s Preparing to unpack .../08-fontconfig-config_2.15.0-1.1ubuntu2_ppc64el.deb ... 163s Unpacking fontconfig-config (2.15.0-1.1ubuntu2) ... 163s Selecting previously unselected package libblas3:ppc64el. 163s Preparing to unpack .../09-libblas3_3.12.0-3build2_ppc64el.deb ... 163s Unpacking libblas3:ppc64el (3.12.0-3build2) ... 163s Selecting previously unselected package libfontconfig1:ppc64el. 163s Preparing to unpack .../10-libfontconfig1_2.15.0-1.1ubuntu2_ppc64el.deb ... 163s Unpacking libfontconfig1:ppc64el (2.15.0-1.1ubuntu2) ... 163s Selecting previously unselected package libpixman-1-0:ppc64el. 163s Preparing to unpack .../11-libpixman-1-0_0.44.0-3_ppc64el.deb ... 163s Unpacking libpixman-1-0:ppc64el (0.44.0-3) ... 163s Selecting previously unselected package libxcb-render0:ppc64el. 163s Preparing to unpack .../12-libxcb-render0_1.17.0-2_ppc64el.deb ... 163s Unpacking libxcb-render0:ppc64el (1.17.0-2) ... 163s Selecting previously unselected package libxcb-shm0:ppc64el. 163s Preparing to unpack .../13-libxcb-shm0_1.17.0-2_ppc64el.deb ... 163s Unpacking libxcb-shm0:ppc64el (1.17.0-2) ... 163s Selecting previously unselected package libxrender1:ppc64el. 163s Preparing to unpack .../14-libxrender1_1%3a0.9.10-1.1build1_ppc64el.deb ... 163s Unpacking libxrender1:ppc64el (1:0.9.10-1.1build1) ... 163s Selecting previously unselected package libcairo2:ppc64el. 163s Preparing to unpack .../15-libcairo2_1.18.2-2_ppc64el.deb ... 163s Unpacking libcairo2:ppc64el (1.18.2-2) ... 164s Selecting previously unselected package libdeflate0:ppc64el. 164s Preparing to unpack .../16-libdeflate0_1.22-1_ppc64el.deb ... 164s Unpacking libdeflate0:ppc64el (1.22-1) ... 164s Selecting previously unselected package libgfortran5:ppc64el. 164s Preparing to unpack .../17-libgfortran5_14.2.0-8ubuntu1_ppc64el.deb ... 164s Unpacking libgfortran5:ppc64el (14.2.0-8ubuntu1) ... 164s Selecting previously unselected package libgomp1:ppc64el. 164s Preparing to unpack .../18-libgomp1_14.2.0-8ubuntu1_ppc64el.deb ... 164s Unpacking libgomp1:ppc64el (14.2.0-8ubuntu1) ... 164s Selecting previously unselected package libgraphite2-3:ppc64el. 164s Preparing to unpack .../19-libgraphite2-3_1.3.14-2ubuntu1_ppc64el.deb ... 164s Unpacking libgraphite2-3:ppc64el (1.3.14-2ubuntu1) ... 164s Selecting previously unselected package libharfbuzz0b:ppc64el. 164s Preparing to unpack .../20-libharfbuzz0b_10.0.1-1_ppc64el.deb ... 164s Unpacking libharfbuzz0b:ppc64el (10.0.1-1) ... 164s Selecting previously unselected package libimagequant0:ppc64el. 164s Preparing to unpack .../21-libimagequant0_2.18.0-1build1_ppc64el.deb ... 164s Unpacking libimagequant0:ppc64el (2.18.0-1build1) ... 164s Selecting previously unselected package libjpeg-turbo8:ppc64el. 164s Preparing to unpack .../22-libjpeg-turbo8_2.1.5-2ubuntu2_ppc64el.deb ... 164s Unpacking libjpeg-turbo8:ppc64el (2.1.5-2ubuntu2) ... 164s Selecting previously unselected package libjpeg8:ppc64el. 164s Preparing to unpack .../23-libjpeg8_8c-2ubuntu11_ppc64el.deb ... 164s Unpacking libjpeg8:ppc64el (8c-2ubuntu11) ... 164s Selecting previously unselected package liblapack3:ppc64el. 164s Preparing to unpack .../24-liblapack3_3.12.0-3build2_ppc64el.deb ... 164s Unpacking liblapack3:ppc64el (3.12.0-3build2) ... 164s Selecting previously unselected package liblcms2-2:ppc64el. 164s Preparing to unpack .../25-liblcms2-2_2.16-2_ppc64el.deb ... 164s Unpacking liblcms2-2:ppc64el (2.16-2) ... 164s Selecting previously unselected package liblerc4:ppc64el. 164s Preparing to unpack .../26-liblerc4_4.0.0+ds-4ubuntu2_ppc64el.deb ... 164s Unpacking liblerc4:ppc64el (4.0.0+ds-4ubuntu2) ... 164s Selecting previously unselected package libraqm0:ppc64el. 164s Preparing to unpack .../27-libraqm0_0.10.1-1build1_ppc64el.deb ... 164s Unpacking libraqm0:ppc64el (0.10.1-1build1) ... 164s Selecting previously unselected package libsharpyuv0:ppc64el. 164s Preparing to unpack .../28-libsharpyuv0_1.4.0-0.1_ppc64el.deb ... 164s Unpacking libsharpyuv0:ppc64el (1.4.0-0.1) ... 164s Selecting previously unselected package libjbig0:ppc64el. 164s Preparing to unpack .../29-libjbig0_2.1-6.1ubuntu2_ppc64el.deb ... 164s Unpacking libjbig0:ppc64el (2.1-6.1ubuntu2) ... 164s Selecting previously unselected package libwebp7:ppc64el. 164s Preparing to unpack .../30-libwebp7_1.4.0-0.1_ppc64el.deb ... 164s Unpacking libwebp7:ppc64el (1.4.0-0.1) ... 164s Selecting previously unselected package libtiff6:ppc64el. 164s Preparing to unpack .../31-libtiff6_4.5.1+git230720-4ubuntu4_ppc64el.deb ... 164s Unpacking libtiff6:ppc64el (4.5.1+git230720-4ubuntu4) ... 164s Selecting previously unselected package libwebpdemux2:ppc64el. 164s Preparing to unpack .../32-libwebpdemux2_1.4.0-0.1_ppc64el.deb ... 164s Unpacking libwebpdemux2:ppc64el (1.4.0-0.1) ... 164s Selecting previously unselected package libwebpmux3:ppc64el. 164s Preparing to unpack .../33-libwebpmux3_1.4.0-0.1_ppc64el.deb ... 164s Unpacking libwebpmux3:ppc64el (1.4.0-0.1) ... 164s Selecting previously unselected package python3-numpy. 164s Preparing to unpack .../34-python3-numpy_1%3a1.26.4+ds-11build1_ppc64el.deb ... 164s Unpacking python3-numpy (1:1.26.4+ds-11build1) ... 164s Selecting previously unselected package libopenjp2-7:ppc64el. 164s Preparing to unpack .../35-libopenjp2-7_2.5.0-2ubuntu1_ppc64el.deb ... 164s Unpacking libopenjp2-7:ppc64el (2.5.0-2ubuntu1) ... 164s Selecting previously unselected package python3-pil:ppc64el. 164s Preparing to unpack .../36-python3-pil_10.4.0-1ubuntu1_ppc64el.deb ... 164s Unpacking python3-pil:ppc64el (10.4.0-1ubuntu1) ... 164s Selecting previously unselected package python3-cairo. 164s Preparing to unpack .../37-python3-cairo_1.26.1-2_ppc64el.deb ... 164s Unpacking python3-cairo (1.26.1-2) ... 164s Selecting previously unselected package python3-freetype. 164s Preparing to unpack .../38-python3-freetype_2.5.1-1_all.deb ... 164s Unpacking python3-freetype (2.5.1-1) ... 164s Selecting previously unselected package python3-rlpycairo. 164s Preparing to unpack .../39-python3-rlpycairo_0.3.0-3_all.deb ... 164s Unpacking python3-rlpycairo (0.3.0-3) ... 164s Selecting previously unselected package python3-reportlab. 164s Preparing to unpack .../40-python3-reportlab_4.2.5-1_all.deb ... 164s Unpacking python3-reportlab (4.2.5-1) ... 164s Selecting previously unselected package xml-core. 164s Preparing to unpack .../41-xml-core_0.19_all.deb ... 164s Unpacking xml-core (0.19) ... 165s Selecting previously unselected package w3c-sgml-lib. 165s Preparing to unpack .../42-w3c-sgml-lib_1.3-3_all.deb ... 165s Unpacking w3c-sgml-lib (1.3-3) ... 165s Selecting previously unselected package python3-biopython. 165s Preparing to unpack .../43-python3-biopython_1.84+dfsg-4_ppc64el.deb ... 165s Unpacking python3-biopython (1.84+dfsg-4) ... 165s Selecting previously unselected package python3-pygtrie. 165s Preparing to unpack .../44-python3-pygtrie_2.2-2_all.deb ... 165s Unpacking python3-pygtrie (2.2-2) ... 165s Selecting previously unselected package seqmagick. 165s Preparing to unpack .../45-seqmagick_0.8.6-3_all.deb ... 165s Unpacking seqmagick (0.8.6-3) ... 165s Selecting previously unselected package autopkgtest-satdep. 165s Preparing to unpack .../46-1-autopkgtest-satdep.deb ... 165s Unpacking autopkgtest-satdep (0) ... 165s Setting up libgraphite2-3:ppc64el (1.3.14-2ubuntu1) ... 165s Setting up liblcms2-2:ppc64el (2.16-2) ... 165s Setting up libpixman-1-0:ppc64el (0.44.0-3) ... 165s Setting up libsharpyuv0:ppc64el (1.4.0-0.1) ... 165s Setting up liblerc4:ppc64el (4.0.0+ds-4ubuntu2) ... 165s Setting up libxrender1:ppc64el (1:0.9.10-1.1build1) ... 165s Setting up libxcb-render0:ppc64el (1.17.0-2) ... 165s Setting up x11-common (1:7.7+23ubuntu3) ... 165s Setting up libdeflate0:ppc64el (1.22-1) ... 165s Setting up libxcb-shm0:ppc64el (1.17.0-2) ... 165s Setting up libgomp1:ppc64el (14.2.0-8ubuntu1) ... 165s Setting up python3-freetype (2.5.1-1) ... 165s Setting up libjbig0:ppc64el (2.1-6.1ubuntu2) ... 165s Setting up libfontenc1:ppc64el (1:1.1.8-1build1) ... 165s Setting up python3-pygtrie (2.2-2) ... 165s Setting up libblas3:ppc64el (3.12.0-3build2) ... 165s update-alternatives: using /usr/lib/powerpc64le-linux-gnu/blas/libblas.so.3 to provide /usr/lib/powerpc64le-linux-gnu/libblas.so.3 (libblas.so.3-powerpc64le-linux-gnu) in auto mode 165s Setting up xfonts-encodings (1:1.0.5-0ubuntu2) ... 165s Setting up libimagequant0:ppc64el (2.18.0-1build1) ... 165s Setting up fonts-dejavu-mono (2.37-8) ... 165s Setting up fonts-dejavu-core (2.37-8) ... 165s Setting up libjpeg-turbo8:ppc64el (2.1.5-2ubuntu2) ... 166s Setting up libgfortran5:ppc64el (14.2.0-8ubuntu1) ... 166s Setting up libwebp7:ppc64el (1.4.0-0.1) ... 166s Setting up libopenjp2-7:ppc64el (2.5.0-2ubuntu1) ... 166s Setting up libharfbuzz0b:ppc64el (10.0.1-1) ... 166s Setting up sgml-base (1.31) ... 166s Setting up libwebpmux3:ppc64el (1.4.0-0.1) ... 166s Setting up libjpeg8:ppc64el (8c-2ubuntu11) ... 166s Setting up liblapack3:ppc64el (3.12.0-3build2) ... 166s update-alternatives: using /usr/lib/powerpc64le-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/powerpc64le-linux-gnu/liblapack.so.3 (liblapack.so.3-powerpc64le-linux-gnu) in auto mode 166s Setting up fontconfig-config (2.15.0-1.1ubuntu2) ... 166s Setting up libwebpdemux2:ppc64el (1.4.0-0.1) ... 166s Setting up xfonts-utils (1:7.7+7) ... 166s Setting up libraqm0:ppc64el (0.10.1-1build1) ... 166s Setting up python3-numpy (1:1.26.4+ds-11build1) ... 168s Setting up libtiff6:ppc64el (4.5.1+git230720-4ubuntu4) ... 168s Setting up xml-core (0.19) ... 168s Setting up libfontconfig1:ppc64el (2.15.0-1.1ubuntu2) ... 168s Setting up fonts-urw-base35 (20200910-8) ... 168s Setting up libcairo2:ppc64el (1.18.2-2) ... 168s Setting up python3-pil:ppc64el (10.4.0-1ubuntu1) ... 169s Setting up python3-cairo (1.26.1-2) ... 169s Setting up python3-rlpycairo (0.3.0-3) ... 169s Setting up python3-reportlab (4.2.5-1) ... 170s Processing triggers for libc-bin (2.40-1ubuntu3) ... 170s Processing triggers for man-db (2.12.1-3) ... 171s Processing triggers for sgml-base (1.31) ... 171s Setting up w3c-sgml-lib (1.3-3) ... 204s Setting up python3-biopython (1.84+dfsg-4) ... 206s Setting up seqmagick (0.8.6-3) ... 206s Setting up autopkgtest-satdep (0) ... 209s (Reading database ... 77080 files and directories currently installed.) 209s Removing autopkgtest-satdep (0) ... 210s autopkgtest [02:20:27]: test run-unit-test: [----------------------- 210s ++ find examples/ -name '*.sh' 210s + for f in `find examples/ -name '*.sh'` 210s ++ dirname examples/apply-function/run_filter.sh 210s + cd examples/apply-function 210s ++ basename examples/apply-function/run_filter.sh 210s + /bin/bash run_filter.sh 211s + cd - 211s + for f in `find examples/ -name '*.sh'` 211s ++ dirname examples/include-from-file/do_filter.sh 211s /tmp/autopkgtest.XY56JQ/autopkgtest_tmp 211s + cd examples/include-from-file 211s ++ basename examples/include-from-file/do_filter.sh 211s + /bin/bash do_filter.sh 211s /tmp/autopkgtest.XY56JQ/autopkgtest_tmp 211s PASS 211s + cd - 211s + echo PASS 211s autopkgtest [02:20:28]: test run-unit-test: -----------------------] 212s autopkgtest [02:20:29]: test run-unit-test: - - - - - - - - - - results - - - - - - - - - - 212s run-unit-test PASS 212s autopkgtest [02:20:29]: test pybuild-autopkgtest: preparing testbed 213s Reading package lists... 213s Building dependency tree... 213s Reading state information... 214s Starting pkgProblemResolver with broken count: 0 214s Starting 2 pkgProblemResolver with broken count: 0 214s Done 214s The following additional packages will be installed: 214s autoconf automake autopoint autotools-dev build-essential cpp cpp-14 214s cpp-14-powerpc64le-linux-gnu cpp-powerpc64le-linux-gnu debhelper debugedit 214s dh-autoreconf dh-python dh-strip-nondeterminism dwz g++ g++-14 214s g++-14-powerpc64le-linux-gnu g++-powerpc64le-linux-gnu gcc gcc-14 214s gcc-14-powerpc64le-linux-gnu gcc-powerpc64le-linux-gnu gettext 214s intltool-debian libarchive-zip-perl libasan8 libcc1-0 libdebhelper-perl 214s libfile-stripnondeterminism-perl libgcc-14-dev libisl23 libitm1 liblsan0 214s libmpc3 libpython3.13-minimal libpython3.13-stdlib libquadmath0 214s libstdc++-14-dev libtool libtsan2 libubsan1 m4 po-debconf 214s pybuild-plugin-autopkgtest python3-all python3-iniconfig python3-packaging 214s python3-pluggy python3-pytest python3.13 python3.13-minimal 214s Suggested packages: 214s autoconf-archive gnu-standards autoconf-doc cpp-doc gcc-14-locales 214s cpp-14-doc dh-make flit python3-build python3-installer python3-wheel 214s gcc-14-doc gcc-multilib manpages-dev flex bison gdb gcc-doc 214s gdb-powerpc64le-linux-gnu gettext-doc libasprintf-dev libgettextpo-dev 214s libstdc++-14-doc libtool-doc gfortran | fortran95-compiler gcj-jdk m4-doc 214s libmail-box-perl python3.13-venv python3.13-doc binfmt-support 214s Recommended packages: 214s libarchive-cpio-perl libltdl-dev libmail-sendmail-perl 214s The following NEW packages will be installed: 214s autoconf automake autopkgtest-satdep autopoint autotools-dev build-essential 214s cpp cpp-14 cpp-14-powerpc64le-linux-gnu cpp-powerpc64le-linux-gnu debhelper 214s debugedit dh-autoreconf dh-python dh-strip-nondeterminism dwz g++ g++-14 214s g++-14-powerpc64le-linux-gnu g++-powerpc64le-linux-gnu gcc gcc-14 214s gcc-14-powerpc64le-linux-gnu gcc-powerpc64le-linux-gnu gettext 214s intltool-debian libarchive-zip-perl libasan8 libcc1-0 libdebhelper-perl 214s libfile-stripnondeterminism-perl libgcc-14-dev libisl23 libitm1 liblsan0 214s libmpc3 libpython3.13-minimal libpython3.13-stdlib libquadmath0 214s libstdc++-14-dev libtool libtsan2 libubsan1 m4 po-debconf 214s pybuild-plugin-autopkgtest python3-all python3-iniconfig python3-packaging 214s python3-pluggy python3-pytest python3.13 python3.13-minimal 214s 0 upgraded, 53 newly installed, 0 to remove and 0 not upgraded. 214s Need to get 68.5 MB/68.5 MB of archives. 214s After this operation, 250 MB of additional disk space will be used. 214s Get:1 /tmp/autopkgtest.XY56JQ/2-autopkgtest-satdep.deb autopkgtest-satdep ppc64el 0 [792 B] 214s Get:2 http://ftpmaster.internal/ubuntu plucky/main ppc64el libpython3.13-minimal ppc64el 3.13.0-2 [881 kB] 214s Get:3 http://ftpmaster.internal/ubuntu plucky/main ppc64el python3.13-minimal ppc64el 3.13.0-2 [2302 kB] 215s Get:4 http://ftpmaster.internal/ubuntu plucky/main ppc64el m4 ppc64el 1.4.19-4build1 [278 kB] 215s Get:5 http://ftpmaster.internal/ubuntu plucky/main ppc64el autoconf all 2.72-3 [382 kB] 215s Get:6 http://ftpmaster.internal/ubuntu plucky/main ppc64el autotools-dev all 20220109.1 [44.9 kB] 215s Get:7 http://ftpmaster.internal/ubuntu plucky/main ppc64el automake all 1:1.16.5-1.3ubuntu1 [558 kB] 215s Get:8 http://ftpmaster.internal/ubuntu plucky/main ppc64el autopoint all 0.22.5-2 [616 kB] 215s Get:9 http://ftpmaster.internal/ubuntu plucky/main ppc64el libisl23 ppc64el 0.27-1 [882 kB] 215s Get:10 http://ftpmaster.internal/ubuntu plucky/main ppc64el libmpc3 ppc64el 1.3.1-1build2 [62.1 kB] 215s Get:11 http://ftpmaster.internal/ubuntu plucky/main ppc64el cpp-14-powerpc64le-linux-gnu ppc64el 14.2.0-8ubuntu1 [10.5 MB] 215s Get:12 http://ftpmaster.internal/ubuntu plucky/main ppc64el cpp-14 ppc64el 14.2.0-8ubuntu1 [1034 B] 215s Get:13 http://ftpmaster.internal/ubuntu plucky/main ppc64el cpp-powerpc64le-linux-gnu ppc64el 4:14.1.0-2ubuntu1 [5456 B] 215s Get:14 http://ftpmaster.internal/ubuntu plucky/main ppc64el cpp ppc64el 4:14.1.0-2ubuntu1 [22.5 kB] 215s Get:15 http://ftpmaster.internal/ubuntu plucky/main ppc64el libcc1-0 ppc64el 14.2.0-8ubuntu1 [48.1 kB] 215s Get:16 http://ftpmaster.internal/ubuntu plucky/main ppc64el libitm1 ppc64el 14.2.0-8ubuntu1 [31.9 kB] 215s Get:17 http://ftpmaster.internal/ubuntu plucky/main ppc64el libasan8 ppc64el 14.2.0-8ubuntu1 [2945 kB] 216s Get:18 http://ftpmaster.internal/ubuntu plucky/main ppc64el liblsan0 ppc64el 14.2.0-8ubuntu1 [1322 kB] 216s Get:19 http://ftpmaster.internal/ubuntu plucky/main ppc64el libtsan2 ppc64el 14.2.0-8ubuntu1 [2695 kB] 216s Get:20 http://ftpmaster.internal/ubuntu plucky/main ppc64el libubsan1 ppc64el 14.2.0-8ubuntu1 [1191 kB] 216s Get:21 http://ftpmaster.internal/ubuntu plucky/main ppc64el libquadmath0 ppc64el 14.2.0-8ubuntu1 [158 kB] 216s Get:22 http://ftpmaster.internal/ubuntu plucky/main ppc64el libgcc-14-dev ppc64el 14.2.0-8ubuntu1 [1619 kB] 216s Get:23 http://ftpmaster.internal/ubuntu plucky/main ppc64el gcc-14-powerpc64le-linux-gnu ppc64el 14.2.0-8ubuntu1 [20.6 MB] 216s Get:24 http://ftpmaster.internal/ubuntu plucky/main ppc64el gcc-14 ppc64el 14.2.0-8ubuntu1 [528 kB] 216s Get:25 http://ftpmaster.internal/ubuntu plucky/main ppc64el gcc-powerpc64le-linux-gnu ppc64el 4:14.1.0-2ubuntu1 [1222 B] 216s Get:26 http://ftpmaster.internal/ubuntu plucky/main ppc64el gcc ppc64el 4:14.1.0-2ubuntu1 [5006 B] 216s Get:27 http://ftpmaster.internal/ubuntu plucky/main ppc64el libstdc++-14-dev ppc64el 14.2.0-8ubuntu1 [2673 kB] 216s Get:28 http://ftpmaster.internal/ubuntu plucky/main ppc64el g++-14-powerpc64le-linux-gnu ppc64el 14.2.0-8ubuntu1 [12.0 MB] 217s Get:29 http://ftpmaster.internal/ubuntu plucky/main ppc64el g++-14 ppc64el 14.2.0-8ubuntu1 [19.9 kB] 217s Get:30 http://ftpmaster.internal/ubuntu plucky/main ppc64el g++-powerpc64le-linux-gnu ppc64el 4:14.1.0-2ubuntu1 [968 B] 217s Get:31 http://ftpmaster.internal/ubuntu plucky/main ppc64el g++ ppc64el 4:14.1.0-2ubuntu1 [1090 B] 217s Get:32 http://ftpmaster.internal/ubuntu plucky/main ppc64el build-essential ppc64el 12.10ubuntu1 [4936 B] 217s Get:33 http://ftpmaster.internal/ubuntu plucky/main ppc64el libdebhelper-perl all 13.20ubuntu1 [94.2 kB] 217s Get:34 http://ftpmaster.internal/ubuntu plucky/main ppc64el libtool all 2.4.7-7build1 [166 kB] 217s Get:35 http://ftpmaster.internal/ubuntu plucky/main ppc64el dh-autoreconf all 20 [16.1 kB] 217s Get:36 http://ftpmaster.internal/ubuntu plucky/main ppc64el libarchive-zip-perl all 1.68-1 [90.2 kB] 217s Get:37 http://ftpmaster.internal/ubuntu plucky/main ppc64el libfile-stripnondeterminism-perl all 1.14.0-1 [20.1 kB] 217s Get:38 http://ftpmaster.internal/ubuntu plucky/main ppc64el dh-strip-nondeterminism all 1.14.0-1 [5058 B] 217s Get:39 http://ftpmaster.internal/ubuntu plucky/main ppc64el debugedit ppc64el 1:5.1-1 [52.1 kB] 217s Get:40 http://ftpmaster.internal/ubuntu plucky/main ppc64el dwz ppc64el 0.15-1build6 [142 kB] 217s Get:41 http://ftpmaster.internal/ubuntu plucky/main ppc64el gettext ppc64el 0.22.5-2 [1082 kB] 217s Get:42 http://ftpmaster.internal/ubuntu plucky/main ppc64el intltool-debian all 0.35.0+20060710.6 [23.2 kB] 217s Get:43 http://ftpmaster.internal/ubuntu plucky/main ppc64el po-debconf all 1.0.21+nmu1 [233 kB] 217s Get:44 http://ftpmaster.internal/ubuntu plucky/main ppc64el debhelper all 13.20ubuntu1 [893 kB] 217s Get:45 http://ftpmaster.internal/ubuntu plucky/universe ppc64el dh-python all 6.20241024 [112 kB] 217s Get:46 http://ftpmaster.internal/ubuntu plucky/main ppc64el libpython3.13-stdlib ppc64el 3.13.0-2 [2148 kB] 217s Get:47 http://ftpmaster.internal/ubuntu plucky/universe ppc64el pybuild-plugin-autopkgtest all 6.20241024 [1746 B] 217s Get:48 http://ftpmaster.internal/ubuntu plucky/main ppc64el python3.13 ppc64el 3.13.0-2 [719 kB] 217s Get:49 http://ftpmaster.internal/ubuntu plucky-proposed/main ppc64el python3-all ppc64el 3.12.7-1 [888 B] 217s Get:50 http://ftpmaster.internal/ubuntu plucky/universe ppc64el python3-iniconfig all 1.1.1-2 [6024 B] 217s Get:51 http://ftpmaster.internal/ubuntu plucky/main ppc64el python3-packaging all 24.1-1 [41.4 kB] 217s Get:52 http://ftpmaster.internal/ubuntu plucky/universe ppc64el python3-pluggy all 1.5.0-1 [21.0 kB] 217s Get:53 http://ftpmaster.internal/ubuntu plucky/universe ppc64el python3-pytest all 8.3.3-1 [251 kB] 217s Fetched 68.5 MB in 3s (22.0 MB/s) 217s Selecting previously unselected package libpython3.13-minimal:ppc64el. 217s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 77080 files and directories currently installed.) 217s Preparing to unpack .../00-libpython3.13-minimal_3.13.0-2_ppc64el.deb ... 217s Unpacking libpython3.13-minimal:ppc64el (3.13.0-2) ... 217s Selecting previously unselected package python3.13-minimal. 217s Preparing to unpack .../01-python3.13-minimal_3.13.0-2_ppc64el.deb ... 217s Unpacking python3.13-minimal (3.13.0-2) ... 217s Selecting previously unselected package m4. 217s Preparing to unpack .../02-m4_1.4.19-4build1_ppc64el.deb ... 217s Unpacking m4 (1.4.19-4build1) ... 218s Selecting previously unselected package autoconf. 218s Preparing to unpack .../03-autoconf_2.72-3_all.deb ... 218s Unpacking autoconf (2.72-3) ... 218s Selecting previously unselected package autotools-dev. 218s Preparing to unpack .../04-autotools-dev_20220109.1_all.deb ... 218s Unpacking autotools-dev (20220109.1) ... 218s Selecting previously unselected package automake. 218s Preparing to unpack .../05-automake_1%3a1.16.5-1.3ubuntu1_all.deb ... 218s Unpacking automake (1:1.16.5-1.3ubuntu1) ... 218s Selecting previously unselected package autopoint. 218s Preparing to unpack .../06-autopoint_0.22.5-2_all.deb ... 218s Unpacking autopoint (0.22.5-2) ... 218s Selecting previously unselected package libisl23:ppc64el. 218s Preparing to unpack .../07-libisl23_0.27-1_ppc64el.deb ... 218s Unpacking libisl23:ppc64el (0.27-1) ... 218s Selecting previously unselected package libmpc3:ppc64el. 218s Preparing to unpack .../08-libmpc3_1.3.1-1build2_ppc64el.deb ... 218s Unpacking libmpc3:ppc64el (1.3.1-1build2) ... 218s Selecting previously unselected package cpp-14-powerpc64le-linux-gnu. 218s Preparing to unpack .../09-cpp-14-powerpc64le-linux-gnu_14.2.0-8ubuntu1_ppc64el.deb ... 218s Unpacking cpp-14-powerpc64le-linux-gnu (14.2.0-8ubuntu1) ... 218s Selecting previously unselected package cpp-14. 218s Preparing to unpack .../10-cpp-14_14.2.0-8ubuntu1_ppc64el.deb ... 218s Unpacking cpp-14 (14.2.0-8ubuntu1) ... 218s Selecting previously unselected package cpp-powerpc64le-linux-gnu. 218s Preparing to unpack .../11-cpp-powerpc64le-linux-gnu_4%3a14.1.0-2ubuntu1_ppc64el.deb ... 218s Unpacking cpp-powerpc64le-linux-gnu (4:14.1.0-2ubuntu1) ... 218s Selecting previously unselected package cpp. 218s Preparing to unpack .../12-cpp_4%3a14.1.0-2ubuntu1_ppc64el.deb ... 218s Unpacking cpp (4:14.1.0-2ubuntu1) ... 218s Selecting previously unselected package libcc1-0:ppc64el. 218s Preparing to unpack .../13-libcc1-0_14.2.0-8ubuntu1_ppc64el.deb ... 218s Unpacking libcc1-0:ppc64el (14.2.0-8ubuntu1) ... 218s Selecting previously unselected package libitm1:ppc64el. 218s Preparing to unpack .../14-libitm1_14.2.0-8ubuntu1_ppc64el.deb ... 218s Unpacking libitm1:ppc64el (14.2.0-8ubuntu1) ... 218s Selecting previously unselected package libasan8:ppc64el. 218s Preparing to unpack .../15-libasan8_14.2.0-8ubuntu1_ppc64el.deb ... 218s Unpacking libasan8:ppc64el (14.2.0-8ubuntu1) ... 218s Selecting previously unselected package liblsan0:ppc64el. 218s Preparing to unpack .../16-liblsan0_14.2.0-8ubuntu1_ppc64el.deb ... 218s Unpacking liblsan0:ppc64el (14.2.0-8ubuntu1) ... 218s Selecting previously unselected package libtsan2:ppc64el. 218s Preparing to unpack .../17-libtsan2_14.2.0-8ubuntu1_ppc64el.deb ... 218s Unpacking libtsan2:ppc64el (14.2.0-8ubuntu1) ... 218s Selecting previously unselected package libubsan1:ppc64el. 218s Preparing to unpack .../18-libubsan1_14.2.0-8ubuntu1_ppc64el.deb ... 218s Unpacking libubsan1:ppc64el (14.2.0-8ubuntu1) ... 218s Selecting previously unselected package libquadmath0:ppc64el. 218s Preparing to unpack .../19-libquadmath0_14.2.0-8ubuntu1_ppc64el.deb ... 218s Unpacking libquadmath0:ppc64el (14.2.0-8ubuntu1) ... 218s Selecting previously unselected package libgcc-14-dev:ppc64el. 218s Preparing to unpack .../20-libgcc-14-dev_14.2.0-8ubuntu1_ppc64el.deb ... 218s Unpacking libgcc-14-dev:ppc64el (14.2.0-8ubuntu1) ... 218s Selecting previously unselected package gcc-14-powerpc64le-linux-gnu. 218s Preparing to unpack .../21-gcc-14-powerpc64le-linux-gnu_14.2.0-8ubuntu1_ppc64el.deb ... 218s Unpacking gcc-14-powerpc64le-linux-gnu (14.2.0-8ubuntu1) ... 219s Selecting previously unselected package gcc-14. 219s Preparing to unpack .../22-gcc-14_14.2.0-8ubuntu1_ppc64el.deb ... 219s Unpacking gcc-14 (14.2.0-8ubuntu1) ... 219s Selecting previously unselected package gcc-powerpc64le-linux-gnu. 219s Preparing to unpack .../23-gcc-powerpc64le-linux-gnu_4%3a14.1.0-2ubuntu1_ppc64el.deb ... 219s Unpacking gcc-powerpc64le-linux-gnu (4:14.1.0-2ubuntu1) ... 219s Selecting previously unselected package gcc. 219s Preparing to unpack .../24-gcc_4%3a14.1.0-2ubuntu1_ppc64el.deb ... 219s Unpacking gcc (4:14.1.0-2ubuntu1) ... 219s Selecting previously unselected package libstdc++-14-dev:ppc64el. 219s Preparing to unpack .../25-libstdc++-14-dev_14.2.0-8ubuntu1_ppc64el.deb ... 219s Unpacking libstdc++-14-dev:ppc64el (14.2.0-8ubuntu1) ... 219s Selecting previously unselected package g++-14-powerpc64le-linux-gnu. 219s Preparing to unpack .../26-g++-14-powerpc64le-linux-gnu_14.2.0-8ubuntu1_ppc64el.deb ... 219s Unpacking g++-14-powerpc64le-linux-gnu (14.2.0-8ubuntu1) ... 219s Selecting previously unselected package g++-14. 219s Preparing to unpack .../27-g++-14_14.2.0-8ubuntu1_ppc64el.deb ... 219s Unpacking g++-14 (14.2.0-8ubuntu1) ... 219s Selecting previously unselected package g++-powerpc64le-linux-gnu. 219s Preparing to unpack .../28-g++-powerpc64le-linux-gnu_4%3a14.1.0-2ubuntu1_ppc64el.deb ... 219s Unpacking g++-powerpc64le-linux-gnu (4:14.1.0-2ubuntu1) ... 219s Selecting previously unselected package g++. 219s Preparing to unpack .../29-g++_4%3a14.1.0-2ubuntu1_ppc64el.deb ... 219s Unpacking g++ (4:14.1.0-2ubuntu1) ... 219s Selecting previously unselected package build-essential. 219s Preparing to unpack .../30-build-essential_12.10ubuntu1_ppc64el.deb ... 219s Unpacking build-essential (12.10ubuntu1) ... 219s Selecting previously unselected package libdebhelper-perl. 219s Preparing to unpack .../31-libdebhelper-perl_13.20ubuntu1_all.deb ... 219s Unpacking libdebhelper-perl (13.20ubuntu1) ... 219s Selecting previously unselected package libtool. 219s Preparing to unpack .../32-libtool_2.4.7-7build1_all.deb ... 219s Unpacking libtool (2.4.7-7build1) ... 219s Selecting previously unselected package dh-autoreconf. 219s Preparing to unpack .../33-dh-autoreconf_20_all.deb ... 219s Unpacking dh-autoreconf (20) ... 219s Selecting previously unselected package libarchive-zip-perl. 219s Preparing to unpack .../34-libarchive-zip-perl_1.68-1_all.deb ... 219s Unpacking libarchive-zip-perl (1.68-1) ... 219s Selecting previously unselected package libfile-stripnondeterminism-perl. 219s Preparing to unpack .../35-libfile-stripnondeterminism-perl_1.14.0-1_all.deb ... 219s Unpacking libfile-stripnondeterminism-perl (1.14.0-1) ... 219s Selecting previously unselected package dh-strip-nondeterminism. 219s Preparing to unpack .../36-dh-strip-nondeterminism_1.14.0-1_all.deb ... 219s Unpacking dh-strip-nondeterminism (1.14.0-1) ... 219s Selecting previously unselected package debugedit. 219s Preparing to unpack .../37-debugedit_1%3a5.1-1_ppc64el.deb ... 219s Unpacking debugedit (1:5.1-1) ... 219s Selecting previously unselected package dwz. 219s Preparing to unpack .../38-dwz_0.15-1build6_ppc64el.deb ... 219s Unpacking dwz (0.15-1build6) ... 219s Selecting previously unselected package gettext. 219s Preparing to unpack .../39-gettext_0.22.5-2_ppc64el.deb ... 219s Unpacking gettext (0.22.5-2) ... 219s Selecting previously unselected package intltool-debian. 219s Preparing to unpack .../40-intltool-debian_0.35.0+20060710.6_all.deb ... 219s Unpacking intltool-debian (0.35.0+20060710.6) ... 219s Selecting previously unselected package po-debconf. 219s Preparing to unpack .../41-po-debconf_1.0.21+nmu1_all.deb ... 219s Unpacking po-debconf (1.0.21+nmu1) ... 219s Selecting previously unselected package debhelper. 220s Preparing to unpack .../42-debhelper_13.20ubuntu1_all.deb ... 220s Unpacking debhelper (13.20ubuntu1) ... 220s Selecting previously unselected package dh-python. 220s Preparing to unpack .../43-dh-python_6.20241024_all.deb ... 220s Unpacking dh-python (6.20241024) ... 220s Selecting previously unselected package libpython3.13-stdlib:ppc64el. 220s Preparing to unpack .../44-libpython3.13-stdlib_3.13.0-2_ppc64el.deb ... 220s Unpacking libpython3.13-stdlib:ppc64el (3.13.0-2) ... 220s Selecting previously unselected package pybuild-plugin-autopkgtest. 220s Preparing to unpack .../45-pybuild-plugin-autopkgtest_6.20241024_all.deb ... 220s Unpacking pybuild-plugin-autopkgtest (6.20241024) ... 220s Selecting previously unselected package python3.13. 220s Preparing to unpack .../46-python3.13_3.13.0-2_ppc64el.deb ... 220s Unpacking python3.13 (3.13.0-2) ... 220s Selecting previously unselected package python3-all. 220s Preparing to unpack .../47-python3-all_3.12.7-1_ppc64el.deb ... 220s Unpacking python3-all (3.12.7-1) ... 220s Selecting previously unselected package python3-iniconfig. 220s Preparing to unpack .../48-python3-iniconfig_1.1.1-2_all.deb ... 220s Unpacking python3-iniconfig (1.1.1-2) ... 220s Selecting previously unselected package python3-packaging. 220s Preparing to unpack .../49-python3-packaging_24.1-1_all.deb ... 220s Unpacking python3-packaging (24.1-1) ... 220s Selecting previously unselected package python3-pluggy. 220s Preparing to unpack .../50-python3-pluggy_1.5.0-1_all.deb ... 220s Unpacking python3-pluggy (1.5.0-1) ... 220s Selecting previously unselected package python3-pytest. 220s Preparing to unpack .../51-python3-pytest_8.3.3-1_all.deb ... 220s Unpacking python3-pytest (8.3.3-1) ... 220s Selecting previously unselected package autopkgtest-satdep. 220s Preparing to unpack .../52-2-autopkgtest-satdep.deb ... 220s Unpacking autopkgtest-satdep (0) ... 220s Setting up dh-python (6.20241024) ... 220s Setting up python3-iniconfig (1.1.1-2) ... 220s Setting up gettext (0.22.5-2) ... 220s Setting up libarchive-zip-perl (1.68-1) ... 220s Setting up libdebhelper-perl (13.20ubuntu1) ... 220s Setting up m4 (1.4.19-4build1) ... 220s Setting up intltool-debian (0.35.0+20060710.6) ... 220s Setting up libpython3.13-minimal:ppc64el (3.13.0-2) ... 220s Setting up autotools-dev (20220109.1) ... 220s Setting up python3-packaging (24.1-1) ... 221s Setting up libquadmath0:ppc64el (14.2.0-8ubuntu1) ... 221s Setting up libmpc3:ppc64el (1.3.1-1build2) ... 221s Setting up autopoint (0.22.5-2) ... 221s Setting up autoconf (2.72-3) ... 221s Setting up python3-pluggy (1.5.0-1) ... 221s Setting up libubsan1:ppc64el (14.2.0-8ubuntu1) ... 221s Setting up dwz (0.15-1build6) ... 221s Setting up libasan8:ppc64el (14.2.0-8ubuntu1) ... 221s Setting up debugedit (1:5.1-1) ... 221s Setting up python3.13-minimal (3.13.0-2) ... 222s Setting up libtsan2:ppc64el (14.2.0-8ubuntu1) ... 222s Setting up libisl23:ppc64el (0.27-1) ... 222s Setting up libpython3.13-stdlib:ppc64el (3.13.0-2) ... 222s Setting up libcc1-0:ppc64el (14.2.0-8ubuntu1) ... 222s Setting up liblsan0:ppc64el (14.2.0-8ubuntu1) ... 222s Setting up libitm1:ppc64el (14.2.0-8ubuntu1) ... 222s Setting up automake (1:1.16.5-1.3ubuntu1) ... 222s update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode 222s Setting up libfile-stripnondeterminism-perl (1.14.0-1) ... 222s Setting up python3.13 (3.13.0-2) ... 223s Setting up python3-pytest (8.3.3-1) ... 224s Setting up po-debconf (1.0.21+nmu1) ... 224s Setting up python3-all (3.12.7-1) ... 224s Setting up cpp-14-powerpc64le-linux-gnu (14.2.0-8ubuntu1) ... 224s Setting up cpp-14 (14.2.0-8ubuntu1) ... 224s Setting up dh-strip-nondeterminism (1.14.0-1) ... 224s Setting up libgcc-14-dev:ppc64el (14.2.0-8ubuntu1) ... 224s Setting up libstdc++-14-dev:ppc64el (14.2.0-8ubuntu1) ... 224s Setting up cpp-powerpc64le-linux-gnu (4:14.1.0-2ubuntu1) ... 224s Setting up gcc-14-powerpc64le-linux-gnu (14.2.0-8ubuntu1) ... 224s Setting up g++-14-powerpc64le-linux-gnu (14.2.0-8ubuntu1) ... 224s Setting up gcc-14 (14.2.0-8ubuntu1) ... 224s Setting up gcc-powerpc64le-linux-gnu (4:14.1.0-2ubuntu1) ... 224s Setting up cpp (4:14.1.0-2ubuntu1) ... 224s Setting up g++-14 (14.2.0-8ubuntu1) ... 224s Setting up g++-powerpc64le-linux-gnu (4:14.1.0-2ubuntu1) ... 224s Setting up libtool (2.4.7-7build1) ... 224s Setting up gcc (4:14.1.0-2ubuntu1) ... 224s Setting up dh-autoreconf (20) ... 224s Setting up g++ (4:14.1.0-2ubuntu1) ... 224s update-alternatives: using /usr/bin/g++ to provide /usr/bin/c++ (c++) in auto mode 224s Setting up build-essential (12.10ubuntu1) ... 224s Setting up debhelper (13.20ubuntu1) ... 224s Setting up pybuild-plugin-autopkgtest (6.20241024) ... 224s Setting up autopkgtest-satdep (0) ... 224s Processing triggers for systemd (256.5-2ubuntu4) ... 224s Processing triggers for man-db (2.12.1-3) ... 225s Processing triggers for install-info (7.1.1-1) ... 225s Processing triggers for libc-bin (2.40-1ubuntu3) ... 228s (Reading database ... 80286 files and directories currently installed.) 228s Removing autopkgtest-satdep (0) ... 228s autopkgtest [02:20:45]: test pybuild-autopkgtest: pybuild-autopkgtest 228s autopkgtest [02:20:45]: test pybuild-autopkgtest: [----------------------- 229s # Pull test items that are otherwise uncaught by pybuild-autodep8. 229s mkdir -p ../../autopkgtest_tmp/build/seqmagick 229s cp -r /usr/lib/python3/dist-packages/seqmagick/test \ 229s ../../autopkgtest_tmp/build/seqmagick 229s pybuild-autopkgtest 229s I: pybuild base:311: cd /tmp/autopkgtest.XY56JQ/autopkgtest_tmp/build; python3.13 -m pytest 230s ============================= test session starts ============================== 230s platform linux -- Python 3.13.0, pytest-8.3.3, pluggy-1.5.0 230s rootdir: /tmp/autopkgtest.XY56JQ/autopkgtest_tmp/build 230s plugins: typeguard-4.4.1 230s collected 54 items / 4 errors 230s 230s ==================================== ERRORS ==================================== 230s _____ ERROR collecting seqmagick/test/test_subcommands_backtrans_align.py ______ 230s ImportError while importing test module '/tmp/autopkgtest.XY56JQ/autopkgtest_tmp/build/seqmagick/test/test_subcommands_backtrans_align.py'. 230s Hint: make sure your test modules/packages have valid Python names. 230s Traceback: 230s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 230s return _bootstrap._gcd_import(name[level:], package, level) 230s seqmagick/test/test_subcommands_backtrans_align.py:7: in 230s from seqmagick.subcommands import backtrans_align 230s /usr/lib/python3/dist-packages/seqmagick/subcommands/backtrans_align.py:15: in 230s from Bio import SeqIO 230s /usr/lib/python3/dist-packages/Bio/SeqIO/__init__.py:401: in 230s from Bio.SeqIO import TwoBitIO 230s /usr/lib/python3/dist-packages/Bio/SeqIO/TwoBitIO.py:80: in 230s raise MissingPythonDependencyError( 230s E Bio.MissingPythonDependencyError: Install NumPy if you want to use Bio.SeqIO with TwoBit files.See http://www.numpy.org/ 230s _________ ERROR collecting seqmagick/test/test_subcommands_convert.py __________ 230s ImportError while importing test module '/tmp/autopkgtest.XY56JQ/autopkgtest_tmp/build/seqmagick/test/test_subcommands_convert.py'. 230s Hint: make sure your test modules/packages have valid Python names. 230s Traceback: 230s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 230s return _bootstrap._gcd_import(name[level:], package, level) 230s seqmagick/test/test_subcommands_convert.py:10: in 230s from seqmagick.subcommands import convert 230s /usr/lib/python3/dist-packages/seqmagick/subcommands/convert.py:9: in 230s from Bio import SeqIO 230s /usr/lib/python3/dist-packages/Bio/SeqIO/__init__.py:401: in 230s from Bio.SeqIO import TwoBitIO 230s /usr/lib/python3/dist-packages/Bio/SeqIO/TwoBitIO.py:80: in 230s raise MissingPythonDependencyError( 230s E Bio.MissingPythonDependencyError: Install NumPy if you want to use Bio.SeqIO with TwoBit files.See http://www.numpy.org/ 230s ______ ERROR collecting seqmagick/test/test_subcommands_quality_filter.py ______ 230s ImportError while importing test module '/tmp/autopkgtest.XY56JQ/autopkgtest_tmp/build/seqmagick/test/test_subcommands_quality_filter.py'. 230s Hint: make sure your test modules/packages have valid Python names. 230s Traceback: 230s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 230s return _bootstrap._gcd_import(name[level:], package, level) 230s seqmagick/test/test_subcommands_quality_filter.py:8: in 230s from seqmagick.subcommands import quality_filter 230s /usr/lib/python3/dist-packages/seqmagick/subcommands/quality_filter.py:13: in 230s from Bio import SeqIO 230s /usr/lib/python3/dist-packages/Bio/SeqIO/__init__.py:401: in 230s from Bio.SeqIO import TwoBitIO 230s /usr/lib/python3/dist-packages/Bio/SeqIO/TwoBitIO.py:80: in 230s raise MissingPythonDependencyError( 230s E Bio.MissingPythonDependencyError: Install NumPy if you want to use Bio.SeqIO with TwoBit files.See http://www.numpy.org/ 230s ______________ ERROR collecting seqmagick/test/test_transform.py _______________ 230s ImportError while importing test module '/tmp/autopkgtest.XY56JQ/autopkgtest_tmp/build/seqmagick/test/test_transform.py'. 230s Hint: make sure your test modules/packages have valid Python names. 230s Traceback: 230s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 230s return _bootstrap._gcd_import(name[level:], package, level) 230s seqmagick/test/test_transform.py:10: in 230s from Bio import SeqIO 230s /usr/lib/python3/dist-packages/Bio/SeqIO/__init__.py:401: in 230s from Bio.SeqIO import TwoBitIO 230s /usr/lib/python3/dist-packages/Bio/SeqIO/TwoBitIO.py:80: in 230s raise MissingPythonDependencyError( 230s E Bio.MissingPythonDependencyError: Install NumPy if you want to use Bio.SeqIO with TwoBit files.See http://www.numpy.org/ 230s =========================== short test summary info ============================ 230s ERROR seqmagick/test/test_subcommands_backtrans_align.py 230s ERROR seqmagick/test/test_subcommands_convert.py 230s ERROR seqmagick/test/test_subcommands_quality_filter.py 230s ERROR seqmagick/test/test_transform.py 230s !!!!!!!!!!!!!!!!!!! Interrupted: 4 errors during collection !!!!!!!!!!!!!!!!!!!! 230s ============================== 4 errors in 0.65s =============================== 230s E: pybuild pybuild:389: test: plugin distutils failed with: exit code=2: cd /tmp/autopkgtest.XY56JQ/autopkgtest_tmp/build; python3.13 -m pytest 230s I: pybuild base:311: cd /tmp/autopkgtest.XY56JQ/autopkgtest_tmp/build; python3.12 -m pytest 231s ============================= test session starts ============================== 231s platform linux -- Python 3.12.7, pytest-8.3.3, pluggy-1.5.0 231s rootdir: /tmp/autopkgtest.XY56JQ/autopkgtest_tmp/build 231s plugins: typeguard-4.4.1 231s collected 154 items 231s 231s seqmagick/test/integration/test_convert.py .ss.............. [ 11%] 231s seqmagick/test/integration/test_extract_ids.py ..ss.. [ 14%] 231s seqmagick/test/integration/test_info.py ...s [ 17%] 231s seqmagick/test/integration/test_mogrify.py .s. [ 19%] 231s seqmagick/test/test_subcommands_backtrans_align.py ......... [ 25%] 231s seqmagick/test/test_subcommands_common.py ..................s..... [ 40%] 231s seqmagick/test/test_subcommands_convert.py ...... [ 44%] 231s seqmagick/test/test_subcommands_quality_filter.py ...................... [ 59%] 231s .... [ 61%] 231s seqmagick/test/test_transform.py ....................................... [ 87%] 231s .................... [100%] 231s 231s ======================== 147 passed, 7 skipped in 0.84s ======================== 231s pybuild-autopkgtest: error: pybuild --autopkgtest --test-pytest -i python{version} -p "3.13 3.12" returned exit code 13 231s make: *** [/tmp/25p2s5uZ8D/run:4: pybuild-autopkgtest] Error 25 231s pybuild-autopkgtest: error: /tmp/25p2s5uZ8D/run pybuild-autopkgtest returned exit code 2 232s autopkgtest [02:20:49]: test pybuild-autopkgtest: -----------------------] 232s pybuild-autopkgtest FAIL non-zero exit status 25 232s autopkgtest [02:20:49]: test pybuild-autopkgtest: - - - - - - - - - - results - - - - - - - - - - 233s autopkgtest [02:20:50]: @@@@@@@@@@@@@@@@@@@@ summary 233s run-unit-test PASS 233s pybuild-autopkgtest FAIL non-zero exit status 25 244s nova [W] Using flock in prodstack6-ppc64el 244s Creating nova instance adt-plucky-ppc64el-seqmagick-20241114-021657-juju-7f2275-prod-proposed-migration-environment-15-c8567e08-9eae-4004-94b8-701fd7db8ad5 from image adt/ubuntu-plucky-ppc64el-server-20241113.img (UUID 0c5715b6-5cca-4485-b8bf-b85dfd917a5f)...