0s autopkgtest [00:56:16]: starting date and time: 2024-11-05 00:56:16+0000 0s autopkgtest [00:56:16]: git checkout: 6f3be7a8 Fix armhf LXD image generation for plucky 0s autopkgtest [00:56:16]: host juju-7f2275-prod-proposed-migration-environment-2; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.d9xczcfa/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:r-cran-sf --apt-upgrade r-cran-gstat --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=r-cran-sf/1.0-17+dfsg-1 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest-ppc64el --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-2@bos03-ppc64el-6.secgroup --name adt-plucky-ppc64el-r-cran-gstat-20241105-005616-juju-7f2275-prod-proposed-migration-environment-2-7a461f56-798b-4df8-ae4d-8650643700dd --image adt/ubuntu-plucky-ppc64el-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-2 --net-id=net_prod-proposed-migration-ppc64el -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,keyserver.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/ 90s autopkgtest [00:57:46]: testbed dpkg architecture: ppc64el 90s autopkgtest [00:57:46]: testbed apt version: 2.9.8 90s autopkgtest [00:57:46]: @@@@@@@@@@@@@@@@@@@@ test bed setup 91s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease [73.9 kB] 91s Get:2 http://ftpmaster.internal/ubuntu plucky-proposed/main Sources [177 kB] 91s Get:3 http://ftpmaster.internal/ubuntu plucky-proposed/universe Sources [1763 kB] 92s Get:4 http://ftpmaster.internal/ubuntu plucky-proposed/restricted Sources [7016 B] 92s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse Sources [21.4 kB] 92s Get:6 http://ftpmaster.internal/ubuntu plucky-proposed/main ppc64el Packages [223 kB] 92s Get:7 http://ftpmaster.internal/ubuntu plucky-proposed/universe ppc64el Packages [1296 kB] 92s Get:8 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse ppc64el Packages [33.1 kB] 92s Fetched 3595 kB in 1s (3046 kB/s) 92s Reading package lists... 95s Reading package lists... 95s Building dependency tree... 95s Reading state information... 95s Calculating upgrade... 95s The following packages will be upgraded: 95s libldap-common libldap2 libtraceevent1 libtraceevent1-plugin 95s python3-oauthlib 95s 5 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 95s Need to get 456 kB of archives. 95s After this operation, 1024 B of additional disk space will be used. 95s Get:1 http://ftpmaster.internal/ubuntu plucky/main ppc64el libtraceevent1-plugin ppc64el 1:1.8.3-1ubuntu1 [22.8 kB] 96s Get:2 http://ftpmaster.internal/ubuntu plucky/main ppc64el libtraceevent1 ppc64el 1:1.8.3-1ubuntu1 [77.7 kB] 96s Get:3 http://ftpmaster.internal/ubuntu plucky/main ppc64el libldap-common all 2.6.8+dfsg-1~exp4ubuntu3 [32.3 kB] 96s Get:4 http://ftpmaster.internal/ubuntu plucky/main ppc64el libldap2 ppc64el 2.6.8+dfsg-1~exp4ubuntu3 [233 kB] 96s Get:5 http://ftpmaster.internal/ubuntu plucky/main ppc64el python3-oauthlib all 3.2.2-2 [89.8 kB] 96s Fetched 456 kB in 0s (969 kB/s) 96s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 73549 files and directories currently installed.) 96s Preparing to unpack .../libtraceevent1-plugin_1%3a1.8.3-1ubuntu1_ppc64el.deb ... 96s Unpacking libtraceevent1-plugin:ppc64el (1:1.8.3-1ubuntu1) over (1:1.8.2-1ubuntu3) ... 96s Preparing to unpack .../libtraceevent1_1%3a1.8.3-1ubuntu1_ppc64el.deb ... 96s Unpacking libtraceevent1:ppc64el (1:1.8.3-1ubuntu1) over (1:1.8.2-1ubuntu3) ... 96s Preparing to unpack .../libldap-common_2.6.8+dfsg-1~exp4ubuntu3_all.deb ... 96s Unpacking libldap-common (2.6.8+dfsg-1~exp4ubuntu3) over (2.6.8+dfsg-1~exp4ubuntu1) ... 96s Preparing to unpack .../libldap2_2.6.8+dfsg-1~exp4ubuntu3_ppc64el.deb ... 96s Unpacking libldap2:ppc64el (2.6.8+dfsg-1~exp4ubuntu3) over (2.6.8+dfsg-1~exp4ubuntu1) ... 96s Preparing to unpack .../python3-oauthlib_3.2.2-2_all.deb ... 96s Unpacking python3-oauthlib (3.2.2-2) over (3.2.2-1) ... 97s Setting up libldap-common (2.6.8+dfsg-1~exp4ubuntu3) ... 97s Setting up python3-oauthlib (3.2.2-2) ... 97s Setting up libtraceevent1:ppc64el (1:1.8.3-1ubuntu1) ... 97s Setting up libldap2:ppc64el (2.6.8+dfsg-1~exp4ubuntu3) ... 97s Setting up libtraceevent1-plugin:ppc64el (1:1.8.3-1ubuntu1) ... 97s Processing triggers for man-db (2.12.1-3) ... 97s Processing triggers for libc-bin (2.40-1ubuntu3) ... 97s Reading package lists... 97s Building dependency tree... 97s Reading state information... 98s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 98s Hit:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease 98s Hit:2 http://ftpmaster.internal/ubuntu plucky InRelease 98s Hit:3 http://ftpmaster.internal/ubuntu plucky-updates InRelease 98s Hit:4 http://ftpmaster.internal/ubuntu plucky-security InRelease 99s Reading package lists... 99s Reading package lists... 99s Building dependency tree... 99s Reading state information... 100s Calculating upgrade... 100s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 100s Reading package lists... 100s Building dependency tree... 100s Reading state information... 100s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 103s autopkgtest [00:57:59]: testbed running kernel: Linux 6.11.0-8-generic #8-Ubuntu SMP Mon Sep 16 13:49:23 UTC 2024 103s autopkgtest [00:57:59]: @@@@@@@@@@@@@@@@@@@@ apt-source r-cran-gstat 105s Get:1 http://ftpmaster.internal/ubuntu plucky/universe r-cran-gstat 2.1-1-2 (dsc) [2280 B] 105s Get:2 http://ftpmaster.internal/ubuntu plucky/universe r-cran-gstat 2.1-1-2 (tar) [2298 kB] 105s Get:3 http://ftpmaster.internal/ubuntu plucky/universe r-cran-gstat 2.1-1-2 (diff) [3644 B] 105s gpgv: Signature made Sat Aug 19 19:47:01 2023 UTC 105s gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 105s gpgv: issuer "tille@debian.org" 105s gpgv: Can't check signature: No public key 105s dpkg-source: warning: cannot verify inline signature for ./r-cran-gstat_2.1-1-2.dsc: no acceptable signature found 105s autopkgtest [00:58:01]: testing package r-cran-gstat version 2.1-1-2 106s autopkgtest [00:58:02]: build not needed 107s autopkgtest [00:58:03]: test run-unit-test: preparing testbed 108s Reading package lists... 109s Building dependency tree... 109s Reading state information... 109s Starting pkgProblemResolver with broken count: 0 109s Starting 2 pkgProblemResolver with broken count: 0 109s Done 109s The following additional packages will be installed: 109s fontconfig fontconfig-config fonts-dejavu-core fonts-dejavu-mono gdal-data 109s gdal-plugins libaec0 libaom3 libarmadillo14 libarpack2t64 libblas3 libblosc1 109s libcairo2 libcfitsio10t64 libdatrie1 libde265-0 libdeflate0 libfontconfig1 109s libfreexl1 libfyba0t64 libgdal35 libgeos-c1t64 libgeos3.12.2 libgeotiff5 109s libgfortran5 libgif7 libgomp1 libgraphite2-3 libharfbuzz0b libhdf4-0-alt 109s libhdf5-103-1t64 libhdf5-hl-100t64 libheif-plugin-aomdec 109s libheif-plugin-libde265 libheif1 libice6 libjbig0 libjpeg-turbo8 libjpeg8 109s libkmlbase1t64 libkmldom1t64 libkmlengine1t64 liblapack3 liblcms2-2 liblerc4 109s libltdl7 libminizip1t64 libmysqlclient21 libnetcdf19t64 libodbc2 109s libodbcinst2 libogdi4.1 libopenjp2-7 libpango-1.0-0 libpangocairo-1.0-0 109s libpangoft2-1.0-0 libpaper-utils libpaper1 libpixman-1-0 libpoppler140 109s libpq5 libproj25 libqhull-r8.0 librttopo1 libsharpyuv0 libsm6 libsnappy1v5 109s libspatialite8t64 libsuperlu6 libsz2 libtcl8.6 libthai-data libthai0 109s libtiff6 libtk8.6 libudunits2-0 libudunits2-data liburiparser1 libwebp7 109s libxcb-render0 libxcb-shm0 libxerces-c3.2t64 libxft2 libxrender1 libxss1 109s libxt6t64 littler mysql-common proj-data r-base-core r-cran-abind 109s r-cran-class r-cran-classint r-cran-codetools r-cran-dbi r-cran-digest 109s r-cran-dotcall64 r-cran-e1071 r-cran-fields r-cran-fnn r-cran-future 109s r-cran-future.apply r-cran-globals r-cran-gstat r-cran-intervals 109s r-cran-kernsmooth r-cran-lattice r-cran-listenv r-cran-littler 109s r-cran-magrittr r-cran-mapdata r-cran-maps r-cran-mass r-cran-parallelly 109s r-cran-pkgkitten r-cran-proxy r-cran-raster r-cran-rcpp r-cran-rlang 109s r-cran-s2 r-cran-sf r-cran-sftime r-cran-sp r-cran-spacetime r-cran-spam 109s r-cran-stars r-cran-terra r-cran-units r-cran-viridislite r-cran-wk 109s r-cran-xts r-cran-zoo unixodbc-common unzip x11-common xdg-utils zip 109s Suggested packages: 109s geotiff-bin gdal-bin libgeotiff-epsg libhdf4-alt-dev hdf4-tools 109s libheif-plugin-x265 libheif-plugin-ffmpegdec libheif-plugin-jpegdec 109s libheif-plugin-jpegenc libheif-plugin-j2kdec libheif-plugin-j2kenc 109s libheif-plugin-kvazaar libheif-plugin-rav1e libheif-plugin-svtenc 109s liblcms2-utils odbc-postgresql tdsodbc ogdi-bin proj-bin tcl8.6 tk8.6 109s elpa-ess r-doc-info | r-doc-pdf r-mathlib r-base-html r-cran-rmysql 109s r-cran-mvtnorm r-cran-getopt r-cran-covr r-cran-knitr r-cran-rmarkdown 109s r-cran-mapproj r-cran-inline 109s Recommended packages: 109s proj-bin libheif-plugin-aomenc poppler-data r-recommended r-base-dev 109s r-doc-html r-cran-spdata r-cran-knitr r-cran-rmarkdown r-cran-tinytest 109s r-cran-rhpcblasctl r-cran-rcolorbrewer r-cran-roxygen2 r-cran-testthat 109s r-cran-r.rsp r-cran-markdown r-cran-r.utils r-cran-crayon r-cran-cba 109s r-cran-ncdf4 r-cran-igraph r-cran-exactextractr r-cran-cli r-cran-covr 109s r-cran-fs r-cran-glue r-cran-pillar r-cran-tibble r-cran-usethis 109s r-cran-vctrs r-cran-withr r-cran-bit64 r-cran-blob r-cran-nanoarrow 109s r-cran-dplyr r-cran-ggplot2 r-cran-lwgeom r-cran-matrix 109s r-cran-microbenchmark r-cran-pbapply r-cran-rpostgresql r-cran-rsqlite 109s r-cran-spatstat r-cran-spatstat.geom r-cran-spatstat.random 109s r-cran-spatstat.linnet r-cran-spatstat.utils r-cran-tidyr r-cran-tidyselect 109s r-cran-ncmeta r-cran-deldir r-cran-foreign r-cran-plm r-cran-googlevis 109s r-cran-isocodes r-cran-truncdist r-cran-cairo r-cran-pcict r-cran-rnetcdf 109s r-cran-clue r-cran-cubelyr r-cran-ggforce r-cran-ggthemes r-cran-httr 109s r-cran-jsonlite r-cran-ncdfgeom r-cran-randomforest r-cran-viridis 109s r-cran-xml r-cran-htmlwidgets r-cran-xml2 r-cran-vdiffr r-cran-readr 109s r-cran-timeseries r-cran-timedate r-cran-tseries r-cran-chron 109s libfile-mimeinfo-perl libnet-dbus-perl libx11-protocol-perl x11-utils 109s x11-xserver-utils 109s The following NEW packages will be installed: 109s autopkgtest-satdep fontconfig fontconfig-config fonts-dejavu-core 109s fonts-dejavu-mono gdal-data gdal-plugins libaec0 libaom3 libarmadillo14 109s libarpack2t64 libblas3 libblosc1 libcairo2 libcfitsio10t64 libdatrie1 109s libde265-0 libdeflate0 libfontconfig1 libfreexl1 libfyba0t64 libgdal35 109s libgeos-c1t64 libgeos3.12.2 libgeotiff5 libgfortran5 libgif7 libgomp1 109s libgraphite2-3 libharfbuzz0b libhdf4-0-alt libhdf5-103-1t64 109s libhdf5-hl-100t64 libheif-plugin-aomdec libheif-plugin-libde265 libheif1 109s libice6 libjbig0 libjpeg-turbo8 libjpeg8 libkmlbase1t64 libkmldom1t64 109s libkmlengine1t64 liblapack3 liblcms2-2 liblerc4 libltdl7 libminizip1t64 109s libmysqlclient21 libnetcdf19t64 libodbc2 libodbcinst2 libogdi4.1 109s libopenjp2-7 libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 109s libpaper-utils libpaper1 libpixman-1-0 libpoppler140 libpq5 libproj25 109s libqhull-r8.0 librttopo1 libsharpyuv0 libsm6 libsnappy1v5 libspatialite8t64 109s libsuperlu6 libsz2 libtcl8.6 libthai-data libthai0 libtiff6 libtk8.6 109s libudunits2-0 libudunits2-data liburiparser1 libwebp7 libxcb-render0 109s libxcb-shm0 libxerces-c3.2t64 libxft2 libxrender1 libxss1 libxt6t64 littler 109s mysql-common proj-data r-base-core r-cran-abind r-cran-class r-cran-classint 109s r-cran-codetools r-cran-dbi r-cran-digest r-cran-dotcall64 r-cran-e1071 109s r-cran-fields r-cran-fnn r-cran-future r-cran-future.apply r-cran-globals 109s r-cran-gstat r-cran-intervals r-cran-kernsmooth r-cran-lattice 109s r-cran-listenv r-cran-littler r-cran-magrittr r-cran-mapdata r-cran-maps 109s r-cran-mass r-cran-parallelly r-cran-pkgkitten r-cran-proxy r-cran-raster 109s r-cran-rcpp r-cran-rlang r-cran-s2 r-cran-sf r-cran-sftime r-cran-sp 109s r-cran-spacetime r-cran-spam r-cran-stars r-cran-terra r-cran-units 109s r-cran-viridislite r-cran-wk r-cran-xts r-cran-zoo unixodbc-common unzip 109s x11-common xdg-utils zip 109s 0 upgraded, 138 newly installed, 0 to remove and 0 not upgraded. 109s Need to get 150 MB/150 MB of archives. 109s After this operation, 340 MB of additional disk space will be used. 109s Get:1 /tmp/autopkgtest.jPmDeB/1-autopkgtest-satdep.deb autopkgtest-satdep ppc64el 0 [748 B] 109s Get:2 http://ftpmaster.internal/ubuntu plucky/main ppc64el fonts-dejavu-mono all 2.37-8 [502 kB] 110s Get:3 http://ftpmaster.internal/ubuntu plucky/main ppc64el fonts-dejavu-core all 2.37-8 [835 kB] 110s Get:4 http://ftpmaster.internal/ubuntu plucky/main ppc64el fontconfig-config ppc64el 2.15.0-1.1ubuntu2 [37.4 kB] 110s Get:5 http://ftpmaster.internal/ubuntu plucky/main ppc64el libfontconfig1 ppc64el 2.15.0-1.1ubuntu2 [190 kB] 110s Get:6 http://ftpmaster.internal/ubuntu plucky/main ppc64el fontconfig ppc64el 2.15.0-1.1ubuntu2 [192 kB] 110s Get:7 http://ftpmaster.internal/ubuntu plucky/universe ppc64el gdal-data all 3.9.1+dfsg-1build2 [269 kB] 110s Get:8 http://ftpmaster.internal/ubuntu plucky/universe ppc64el gdal-plugins ppc64el 3.9.1+dfsg-1build2 [25.3 kB] 110s Get:9 http://ftpmaster.internal/ubuntu plucky/universe ppc64el libaec0 ppc64el 1.1.3-1 [30.1 kB] 110s Get:10 http://ftpmaster.internal/ubuntu plucky/main ppc64el libaom3 ppc64el 3.9.1-1 [3007 kB] 110s Get:11 http://ftpmaster.internal/ubuntu plucky/main ppc64el libblas3 ppc64el 3.12.0-3build2 [222 kB] 110s Get:12 http://ftpmaster.internal/ubuntu plucky/main ppc64el libgfortran5 ppc64el 14.2.0-7ubuntu1 [571 kB] 110s Get:13 http://ftpmaster.internal/ubuntu plucky/main ppc64el liblapack3 ppc64el 3.12.0-3build2 [2806 kB] 110s Get:14 http://ftpmaster.internal/ubuntu plucky/universe ppc64el libarpack2t64 ppc64el 3.9.1-1.1ubuntu1 [107 kB] 110s Get:15 http://ftpmaster.internal/ubuntu plucky/universe ppc64el libsuperlu6 ppc64el 6.0.1+dfsg1-1build3 [235 kB] 110s Get:16 http://ftpmaster.internal/ubuntu plucky/universe ppc64el libarmadillo14 ppc64el 1:14.0.1+dfsg-2 [110 kB] 110s Get:17 http://ftpmaster.internal/ubuntu plucky/main ppc64el libsnappy1v5 ppc64el 1.2.1-1 [33.4 kB] 110s Get:18 http://ftpmaster.internal/ubuntu plucky/universe ppc64el libblosc1 ppc64el 1.21.5+ds-1build1 [38.5 kB] 110s Get:19 http://ftpmaster.internal/ubuntu plucky/main ppc64el libpixman-1-0 ppc64el 0.42.2-1build1 [336 kB] 110s Get:20 http://ftpmaster.internal/ubuntu plucky/main ppc64el libxcb-render0 ppc64el 1.17.0-2 [17.2 kB] 110s Get:21 http://ftpmaster.internal/ubuntu plucky/main ppc64el libxcb-shm0 ppc64el 1.17.0-2 [5980 B] 110s Get:22 http://ftpmaster.internal/ubuntu plucky/main ppc64el libxrender1 ppc64el 1:0.9.10-1.1build1 [23.1 kB] 110s Get:23 http://ftpmaster.internal/ubuntu plucky/main ppc64el libcairo2 ppc64el 1.18.2-2 [747 kB] 110s Get:24 http://ftpmaster.internal/ubuntu plucky/universe ppc64el libcfitsio10t64 ppc64el 4.4.1-2 [700 kB] 110s Get:25 http://ftpmaster.internal/ubuntu plucky/main ppc64el libdatrie1 ppc64el 0.2.13-3build1 [22.7 kB] 110s Get:26 http://ftpmaster.internal/ubuntu plucky/main ppc64el libde265-0 ppc64el 1.0.15-1build4 [284 kB] 110s Get:27 http://ftpmaster.internal/ubuntu plucky/main ppc64el libdeflate0 ppc64el 1.21-1 [63.3 kB] 110s Get:28 http://ftpmaster.internal/ubuntu plucky/universe ppc64el libfyba0t64 ppc64el 4.1.1-11build1 [148 kB] 110s Get:29 http://ftpmaster.internal/ubuntu plucky/universe ppc64el libminizip1t64 ppc64el 1:1.3.dfsg+really1.3.1-1ubuntu1 [25.6 kB] 110s Get:30 http://ftpmaster.internal/ubuntu plucky/universe ppc64el libfreexl1 ppc64el 2.0.0-1build2 [53.1 kB] 110s Get:31 http://ftpmaster.internal/ubuntu plucky/universe ppc64el libgeos3.12.2 ppc64el 3.12.2-1 [998 kB] 110s Get:32 http://ftpmaster.internal/ubuntu plucky/universe ppc64el libgeos-c1t64 ppc64el 3.12.2-1 [105 kB] 110s Get:33 http://ftpmaster.internal/ubuntu plucky/universe ppc64el proj-data all 9.4.1-1 [7892 kB] 110s Get:34 http://ftpmaster.internal/ubuntu plucky/main ppc64el libjbig0 ppc64el 2.1-6.1ubuntu2 [35.9 kB] 111s Get:35 http://ftpmaster.internal/ubuntu plucky/main ppc64el libjpeg-turbo8 ppc64el 2.1.5-2ubuntu2 [219 kB] 111s Get:36 http://ftpmaster.internal/ubuntu plucky/main ppc64el libjpeg8 ppc64el 8c-2ubuntu11 [2148 B] 111s Get:37 http://ftpmaster.internal/ubuntu plucky/main ppc64el liblerc4 ppc64el 4.0.0+ds-4ubuntu2 [270 kB] 111s Get:38 http://ftpmaster.internal/ubuntu plucky/main ppc64el libsharpyuv0 ppc64el 1.4.0-0.1 [22.0 kB] 111s Get:39 http://ftpmaster.internal/ubuntu plucky/main ppc64el libwebp7 ppc64el 1.4.0-0.1 [309 kB] 111s Get:40 http://ftpmaster.internal/ubuntu plucky/main ppc64el libtiff6 ppc64el 4.5.1+git230720-4ubuntu4 [272 kB] 111s Get:41 http://ftpmaster.internal/ubuntu plucky/universe ppc64el libproj25 ppc64el 9.4.1-1 [1480 kB] 111s Get:42 http://ftpmaster.internal/ubuntu plucky/universe ppc64el libgeotiff5 ppc64el 1.7.3-1 [65.2 kB] 111s Get:43 http://ftpmaster.internal/ubuntu plucky/main ppc64el libgif7 ppc64el 5.2.2-1ubuntu1 [41.2 kB] 111s Get:44 http://ftpmaster.internal/ubuntu plucky/universe ppc64el libsz2 ppc64el 1.1.3-1 [5566 B] 111s Get:45 http://ftpmaster.internal/ubuntu plucky/universe ppc64el libhdf4-0-alt ppc64el 4.3.0-1 [337 kB] 111s Get:46 http://ftpmaster.internal/ubuntu plucky/universe ppc64el libhdf5-103-1t64 ppc64el 1.10.10+repack-4ubuntu3 [1387 kB] 111s Get:47 http://ftpmaster.internal/ubuntu plucky/main ppc64el libheif-plugin-aomdec ppc64el 1.18.1-2 [11.2 kB] 111s Get:48 http://ftpmaster.internal/ubuntu plucky/main ppc64el libheif-plugin-libde265 ppc64el 1.18.1-2 [9068 B] 111s Get:49 http://ftpmaster.internal/ubuntu plucky/main ppc64el libheif1 ppc64el 1.18.1-2 [340 kB] 111s Get:50 http://ftpmaster.internal/ubuntu plucky/universe ppc64el liburiparser1 ppc64el 0.9.8+dfsg-1 [52.9 kB] 111s Get:51 http://ftpmaster.internal/ubuntu plucky/universe ppc64el libkmlbase1t64 ppc64el 1.3.0-12build1 [59.5 kB] 111s Get:52 http://ftpmaster.internal/ubuntu plucky/universe ppc64el libkmldom1t64 ppc64el 1.3.0-12build1 [168 kB] 111s Get:53 http://ftpmaster.internal/ubuntu plucky/universe ppc64el libkmlengine1t64 ppc64el 1.3.0-12build1 [78.0 kB] 111s Get:54 http://ftpmaster.internal/ubuntu plucky/main ppc64el mysql-common all 5.8+1.1.1 [6800 B] 111s Get:55 http://ftpmaster.internal/ubuntu plucky/main ppc64el libmysqlclient21 ppc64el 8.0.39-1 [1293 kB] 111s Get:56 http://ftpmaster.internal/ubuntu plucky/universe ppc64el libhdf5-hl-100t64 ppc64el 1.10.10+repack-4ubuntu3 [71.2 kB] 111s Get:57 http://ftpmaster.internal/ubuntu plucky/universe ppc64el libnetcdf19t64 ppc64el 1:4.9.2-6ubuntu1 [596 kB] 111s Get:58 http://ftpmaster.internal/ubuntu plucky/main ppc64el libltdl7 ppc64el 2.4.7-7build1 [48.2 kB] 111s Get:59 http://ftpmaster.internal/ubuntu plucky/main ppc64el libodbc2 ppc64el 2.3.12-1ubuntu1 [187 kB] 111s Get:60 http://ftpmaster.internal/ubuntu plucky/main ppc64el unixodbc-common all 2.3.12-1ubuntu1 [8796 B] 111s Get:61 http://ftpmaster.internal/ubuntu plucky/main ppc64el libodbcinst2 ppc64el 2.3.12-1ubuntu1 [36.9 kB] 111s Get:62 http://ftpmaster.internal/ubuntu plucky/universe ppc64el libogdi4.1 ppc64el 4.1.1+ds-5 [257 kB] 111s Get:63 http://ftpmaster.internal/ubuntu plucky/main ppc64el libopenjp2-7 ppc64el 2.5.0-2ubuntu1 [246 kB] 111s Get:64 http://ftpmaster.internal/ubuntu plucky/main ppc64el liblcms2-2 ppc64el 2.14-2build1 [233 kB] 111s Get:65 http://ftpmaster.internal/ubuntu plucky/main ppc64el libpoppler140 ppc64el 24.08.0-1 [1361 kB] 111s Get:66 http://ftpmaster.internal/ubuntu plucky/main ppc64el libpq5 ppc64el 17.0-1 [280 kB] 111s Get:67 http://ftpmaster.internal/ubuntu plucky/universe ppc64el libqhull-r8.0 ppc64el 2020.2-6build1 [225 kB] 111s Get:68 http://ftpmaster.internal/ubuntu plucky/universe ppc64el librttopo1 ppc64el 1.1.0-3build2 [240 kB] 111s Get:69 http://ftpmaster.internal/ubuntu plucky/universe ppc64el libspatialite8t64 ppc64el 5.1.0-3build1 [2233 kB] 111s Get:70 http://ftpmaster.internal/ubuntu plucky/universe ppc64el libxerces-c3.2t64 ppc64el 3.2.4+debian-1.3 [1060 kB] 111s Get:71 http://ftpmaster.internal/ubuntu plucky/universe ppc64el libgdal35 ppc64el 3.9.1+dfsg-1build2 [10.3 MB] 112s Get:72 http://ftpmaster.internal/ubuntu plucky/main ppc64el libgomp1 ppc64el 14.2.0-7ubuntu1 [161 kB] 112s Get:73 http://ftpmaster.internal/ubuntu plucky/main ppc64el libgraphite2-3 ppc64el 1.3.14-2ubuntu1 [84.6 kB] 112s Get:74 http://ftpmaster.internal/ubuntu plucky/main ppc64el libharfbuzz0b ppc64el 9.0.0-1 [595 kB] 112s Get:75 http://ftpmaster.internal/ubuntu plucky/main ppc64el x11-common all 1:7.7+23ubuntu3 [21.7 kB] 112s Get:76 http://ftpmaster.internal/ubuntu plucky/main ppc64el libice6 ppc64el 2:1.0.10-1build3 [49.1 kB] 112s Get:77 http://ftpmaster.internal/ubuntu plucky/main ppc64el libthai-data all 0.1.29-2build1 [158 kB] 112s Get:78 http://ftpmaster.internal/ubuntu plucky/main ppc64el libthai0 ppc64el 0.1.29-2build1 [21.8 kB] 112s Get:79 http://ftpmaster.internal/ubuntu plucky/main ppc64el libpango-1.0-0 ppc64el 1.54.0+ds-2 [272 kB] 112s Get:80 http://ftpmaster.internal/ubuntu plucky/main ppc64el libpangoft2-1.0-0 ppc64el 1.54.0+ds-2 [57.4 kB] 112s Get:81 http://ftpmaster.internal/ubuntu plucky/main ppc64el libpangocairo-1.0-0 ppc64el 1.54.0+ds-2 [30.6 kB] 112s Get:82 http://ftpmaster.internal/ubuntu plucky/main ppc64el libpaper1 ppc64el 1.1.29build1 [13.7 kB] 112s Get:83 http://ftpmaster.internal/ubuntu plucky/main ppc64el libpaper-utils ppc64el 1.1.29build1 [8742 B] 112s Get:84 http://ftpmaster.internal/ubuntu plucky/main ppc64el libsm6 ppc64el 2:1.2.3-1build3 [17.6 kB] 112s Get:85 http://ftpmaster.internal/ubuntu plucky/main ppc64el libtcl8.6 ppc64el 8.6.14+dfsg-1build1 [1204 kB] 112s Get:86 http://ftpmaster.internal/ubuntu plucky/main ppc64el libxft2 ppc64el 2.3.6-1build1 [61.5 kB] 112s Get:87 http://ftpmaster.internal/ubuntu plucky/main ppc64el libxss1 ppc64el 1:1.2.3-1build3 [7980 B] 112s Get:88 http://ftpmaster.internal/ubuntu plucky/main ppc64el libtk8.6 ppc64el 8.6.14-1build1 [944 kB] 112s Get:89 http://ftpmaster.internal/ubuntu plucky/universe ppc64el libudunits2-data all 2.2.28-7build1 [19.4 kB] 112s Get:90 http://ftpmaster.internal/ubuntu plucky/universe ppc64el libudunits2-0 ppc64el 2.2.28-7build1 [67.5 kB] 112s Get:91 http://ftpmaster.internal/ubuntu plucky/main ppc64el libxt6t64 ppc64el 1:1.2.1-1.2build1 [202 kB] 112s Get:92 http://ftpmaster.internal/ubuntu plucky/main ppc64el zip ppc64el 3.0-14 [197 kB] 112s Get:93 http://ftpmaster.internal/ubuntu plucky/main ppc64el unzip ppc64el 6.0-28ubuntu6 [200 kB] 112s Get:94 http://ftpmaster.internal/ubuntu plucky/main ppc64el xdg-utils all 1.2.1-0ubuntu1 [67.5 kB] 112s Get:95 http://ftpmaster.internal/ubuntu plucky/universe ppc64el r-base-core ppc64el 4.4.1-1 [28.9 MB] 113s Get:96 http://ftpmaster.internal/ubuntu plucky/universe ppc64el r-cran-littler ppc64el 0.3.20-1 [97.4 kB] 113s Get:97 http://ftpmaster.internal/ubuntu plucky/universe ppc64el littler all 0.3.20-1 [2486 B] 113s Get:98 http://ftpmaster.internal/ubuntu plucky/universe ppc64el r-cran-abind all 1.4-5-2 [63.6 kB] 113s Get:99 http://ftpmaster.internal/ubuntu plucky/universe ppc64el r-cran-mass ppc64el 7.3-61-1 [1115 kB] 113s Get:100 http://ftpmaster.internal/ubuntu plucky/universe ppc64el r-cran-class ppc64el 7.3-22-2build1 [92.5 kB] 113s Get:101 http://ftpmaster.internal/ubuntu plucky/universe ppc64el r-cran-proxy ppc64el 0.4-27-1 [185 kB] 113s Get:102 http://ftpmaster.internal/ubuntu plucky/universe ppc64el r-cran-e1071 ppc64el 1.7-14-1 [573 kB] 113s Get:103 http://ftpmaster.internal/ubuntu plucky/universe ppc64el r-cran-kernsmooth ppc64el 2.23-24-1 [96.3 kB] 113s Get:104 http://ftpmaster.internal/ubuntu plucky/universe ppc64el r-cran-classint ppc64el 0.4-10+dfsg-1 [106 kB] 113s Get:105 http://ftpmaster.internal/ubuntu plucky/universe ppc64el r-cran-codetools all 0.2-20-1 [90.5 kB] 113s Get:106 http://ftpmaster.internal/ubuntu plucky/universe ppc64el r-cran-dbi all 1.2.3-1 [853 kB] 113s Get:107 http://ftpmaster.internal/ubuntu plucky/universe ppc64el r-cran-digest ppc64el 0.6.36-1 [221 kB] 113s Get:108 http://ftpmaster.internal/ubuntu plucky/universe ppc64el r-cran-dotcall64 ppc64el 1.1-1-1 [48.0 kB] 113s Get:109 http://ftpmaster.internal/ubuntu plucky/universe ppc64el r-cran-pkgkitten all 0.2.4-1 [27.2 kB] 113s Get:110 http://ftpmaster.internal/ubuntu plucky/universe ppc64el r-cran-rcpp ppc64el 1.0.13-1 [1998 kB] 113s Get:111 http://ftpmaster.internal/ubuntu plucky/universe ppc64el r-cran-spam ppc64el 2.10-0-1 [2789 kB] 114s Get:112 http://ftpmaster.internal/ubuntu plucky/universe ppc64el r-cran-viridislite all 0.4.2-2 [1088 kB] 114s Get:113 http://ftpmaster.internal/ubuntu plucky/universe ppc64el r-cran-maps ppc64el 3.4.2-1 [2366 kB] 114s Get:114 http://ftpmaster.internal/ubuntu plucky/universe ppc64el r-cran-fields ppc64el 16.2-1 [4399 kB] 114s Get:115 http://ftpmaster.internal/ubuntu plucky/universe ppc64el r-cran-fnn ppc64el 1.1.4-1 [134 kB] 114s Get:116 http://ftpmaster.internal/ubuntu plucky/universe ppc64el r-cran-globals all 0.16.3-1 [120 kB] 114s Get:117 http://ftpmaster.internal/ubuntu plucky/universe ppc64el r-cran-listenv all 0.9.1+dfsg-1 [112 kB] 114s Get:118 http://ftpmaster.internal/ubuntu plucky/universe ppc64el r-cran-parallelly ppc64el 1.37.1-1build1 [365 kB] 114s Get:119 http://ftpmaster.internal/ubuntu plucky/universe ppc64el r-cran-future all 1.33.1+dfsg-1 [634 kB] 114s Get:120 http://ftpmaster.internal/ubuntu plucky/universe ppc64el r-cran-future.apply all 1.11.2+dfsg-1 [172 kB] 114s Get:121 http://ftpmaster.internal/ubuntu plucky/universe ppc64el r-cran-lattice ppc64el 0.22-6-1 [1340 kB] 114s Get:122 http://ftpmaster.internal/ubuntu plucky/universe ppc64el r-cran-sp ppc64el 1:2.1-2+dfsg-1 [1451 kB] 114s Get:123 http://ftpmaster.internal/ubuntu plucky/universe ppc64el r-cran-zoo ppc64el 1.8-12-2 [986 kB] 114s Get:124 http://ftpmaster.internal/ubuntu plucky/universe ppc64el r-cran-magrittr ppc64el 2.0.3-1 [154 kB] 114s Get:125 http://ftpmaster.internal/ubuntu plucky/universe ppc64el r-cran-wk ppc64el 0.9.1-1 [1858 kB] 114s Get:126 http://ftpmaster.internal/ubuntu plucky/universe ppc64el r-cran-s2 ppc64el 1.1.6-1build2 [2178 kB] 114s Get:127 http://ftpmaster.internal/ubuntu plucky/universe ppc64el r-cran-units ppc64el 0.8-5+dfsg-1 [275 kB] 114s Get:128 http://ftpmaster.internal/ubuntu plucky-proposed/universe ppc64el r-cran-sf ppc64el 1.0-17+dfsg-1 [3274 kB] 114s Get:129 http://ftpmaster.internal/ubuntu plucky/universe ppc64el r-cran-sftime all 0.2-0-6 [168 kB] 114s Get:130 http://ftpmaster.internal/ubuntu plucky/universe ppc64el r-cran-xts ppc64el 0.13.2-1 [789 kB] 114s Get:131 http://ftpmaster.internal/ubuntu plucky/universe ppc64el r-cran-intervals ppc64el 0.15.4-1 [757 kB] 114s Get:132 http://ftpmaster.internal/ubuntu plucky/universe ppc64el r-cran-spacetime all 1.3-1-1 [2804 kB] 115s Get:133 http://ftpmaster.internal/ubuntu plucky/universe ppc64el r-cran-rlang ppc64el 1.1.4-1 [1742 kB] 115s Get:134 http://ftpmaster.internal/ubuntu plucky/universe ppc64el r-cran-stars all 0.6-6-1 [4105 kB] 115s Get:135 http://ftpmaster.internal/ubuntu plucky/universe ppc64el r-cran-gstat ppc64el 2.1-1-2 [2368 kB] 115s Get:136 http://ftpmaster.internal/ubuntu plucky/universe ppc64el r-cran-mapdata ppc64el 2.3.1-1 [23.5 MB] 116s Get:137 http://ftpmaster.internal/ubuntu plucky/universe ppc64el r-cran-terra ppc64el 1.7-78-1 [3876 kB] 116s Get:138 http://ftpmaster.internal/ubuntu plucky/universe ppc64el r-cran-raster ppc64el 3.6-26-1 [3121 kB] 117s Preconfiguring packages ... 117s Fetched 150 MB in 7s (21.3 MB/s) 117s Selecting previously unselected package fonts-dejavu-mono. 117s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 73549 files and directories currently installed.) 117s Preparing to unpack .../000-fonts-dejavu-mono_2.37-8_all.deb ... 117s Unpacking fonts-dejavu-mono (2.37-8) ... 117s Selecting previously unselected package fonts-dejavu-core. 117s Preparing to unpack .../001-fonts-dejavu-core_2.37-8_all.deb ... 117s Unpacking fonts-dejavu-core (2.37-8) ... 117s Selecting previously unselected package fontconfig-config. 117s Preparing to unpack .../002-fontconfig-config_2.15.0-1.1ubuntu2_ppc64el.deb ... 117s Unpacking fontconfig-config (2.15.0-1.1ubuntu2) ... 117s Selecting previously unselected package libfontconfig1:ppc64el. 117s Preparing to unpack .../003-libfontconfig1_2.15.0-1.1ubuntu2_ppc64el.deb ... 117s Unpacking libfontconfig1:ppc64el (2.15.0-1.1ubuntu2) ... 117s Selecting previously unselected package fontconfig. 117s Preparing to unpack .../004-fontconfig_2.15.0-1.1ubuntu2_ppc64el.deb ... 117s Unpacking fontconfig (2.15.0-1.1ubuntu2) ... 117s Selecting previously unselected package gdal-data. 117s Preparing to unpack .../005-gdal-data_3.9.1+dfsg-1build2_all.deb ... 117s Unpacking gdal-data (3.9.1+dfsg-1build2) ... 117s Selecting previously unselected package gdal-plugins:ppc64el. 117s Preparing to unpack .../006-gdal-plugins_3.9.1+dfsg-1build2_ppc64el.deb ... 117s Unpacking gdal-plugins:ppc64el (3.9.1+dfsg-1build2) ... 117s Selecting previously unselected package libaec0:ppc64el. 117s Preparing to unpack .../007-libaec0_1.1.3-1_ppc64el.deb ... 117s Unpacking libaec0:ppc64el (1.1.3-1) ... 117s Selecting previously unselected package libaom3:ppc64el. 117s Preparing to unpack .../008-libaom3_3.9.1-1_ppc64el.deb ... 117s Unpacking libaom3:ppc64el (3.9.1-1) ... 117s Selecting previously unselected package libblas3:ppc64el. 117s Preparing to unpack .../009-libblas3_3.12.0-3build2_ppc64el.deb ... 117s Unpacking libblas3:ppc64el (3.12.0-3build2) ... 117s Selecting previously unselected package libgfortran5:ppc64el. 117s Preparing to unpack .../010-libgfortran5_14.2.0-7ubuntu1_ppc64el.deb ... 117s Unpacking libgfortran5:ppc64el (14.2.0-7ubuntu1) ... 117s Selecting previously unselected package liblapack3:ppc64el. 117s Preparing to unpack .../011-liblapack3_3.12.0-3build2_ppc64el.deb ... 117s Unpacking liblapack3:ppc64el (3.12.0-3build2) ... 117s Selecting previously unselected package libarpack2t64:ppc64el. 117s Preparing to unpack .../012-libarpack2t64_3.9.1-1.1ubuntu1_ppc64el.deb ... 117s Unpacking libarpack2t64:ppc64el (3.9.1-1.1ubuntu1) ... 117s Selecting previously unselected package libsuperlu6:ppc64el. 117s Preparing to unpack .../013-libsuperlu6_6.0.1+dfsg1-1build3_ppc64el.deb ... 117s Unpacking libsuperlu6:ppc64el (6.0.1+dfsg1-1build3) ... 117s Selecting previously unselected package libarmadillo14. 117s Preparing to unpack .../014-libarmadillo14_1%3a14.0.1+dfsg-2_ppc64el.deb ... 117s Unpacking libarmadillo14 (1:14.0.1+dfsg-2) ... 117s Selecting previously unselected package libsnappy1v5:ppc64el. 117s Preparing to unpack .../015-libsnappy1v5_1.2.1-1_ppc64el.deb ... 117s Unpacking libsnappy1v5:ppc64el (1.2.1-1) ... 117s Selecting previously unselected package libblosc1:ppc64el. 117s Preparing to unpack .../016-libblosc1_1.21.5+ds-1build1_ppc64el.deb ... 117s Unpacking libblosc1:ppc64el (1.21.5+ds-1build1) ... 117s Selecting previously unselected package libpixman-1-0:ppc64el. 117s Preparing to unpack .../017-libpixman-1-0_0.42.2-1build1_ppc64el.deb ... 117s Unpacking libpixman-1-0:ppc64el (0.42.2-1build1) ... 117s Selecting previously unselected package libxcb-render0:ppc64el. 117s Preparing to unpack .../018-libxcb-render0_1.17.0-2_ppc64el.deb ... 117s Unpacking libxcb-render0:ppc64el (1.17.0-2) ... 117s Selecting previously unselected package libxcb-shm0:ppc64el. 117s Preparing to unpack .../019-libxcb-shm0_1.17.0-2_ppc64el.deb ... 117s Unpacking libxcb-shm0:ppc64el (1.17.0-2) ... 117s Selecting previously unselected package libxrender1:ppc64el. 117s Preparing to unpack .../020-libxrender1_1%3a0.9.10-1.1build1_ppc64el.deb ... 117s Unpacking libxrender1:ppc64el (1:0.9.10-1.1build1) ... 117s Selecting previously unselected package libcairo2:ppc64el. 117s Preparing to unpack .../021-libcairo2_1.18.2-2_ppc64el.deb ... 117s Unpacking libcairo2:ppc64el (1.18.2-2) ... 118s Selecting previously unselected package libcfitsio10t64:ppc64el. 118s Preparing to unpack .../022-libcfitsio10t64_4.4.1-2_ppc64el.deb ... 118s Unpacking libcfitsio10t64:ppc64el (4.4.1-2) ... 118s Selecting previously unselected package libdatrie1:ppc64el. 118s Preparing to unpack .../023-libdatrie1_0.2.13-3build1_ppc64el.deb ... 118s Unpacking libdatrie1:ppc64el (0.2.13-3build1) ... 118s Selecting previously unselected package libde265-0:ppc64el. 118s Preparing to unpack .../024-libde265-0_1.0.15-1build4_ppc64el.deb ... 118s Unpacking libde265-0:ppc64el (1.0.15-1build4) ... 118s Selecting previously unselected package libdeflate0:ppc64el. 118s Preparing to unpack .../025-libdeflate0_1.21-1_ppc64el.deb ... 118s Unpacking libdeflate0:ppc64el (1.21-1) ... 118s Selecting previously unselected package libfyba0t64:ppc64el. 118s Preparing to unpack .../026-libfyba0t64_4.1.1-11build1_ppc64el.deb ... 118s Unpacking libfyba0t64:ppc64el (4.1.1-11build1) ... 118s Selecting previously unselected package libminizip1t64:ppc64el. 118s Preparing to unpack .../027-libminizip1t64_1%3a1.3.dfsg+really1.3.1-1ubuntu1_ppc64el.deb ... 118s Unpacking libminizip1t64:ppc64el (1:1.3.dfsg+really1.3.1-1ubuntu1) ... 118s Selecting previously unselected package libfreexl1:ppc64el. 118s Preparing to unpack .../028-libfreexl1_2.0.0-1build2_ppc64el.deb ... 118s Unpacking libfreexl1:ppc64el (2.0.0-1build2) ... 118s Selecting previously unselected package libgeos3.12.2:ppc64el. 118s Preparing to unpack .../029-libgeos3.12.2_3.12.2-1_ppc64el.deb ... 118s Unpacking libgeos3.12.2:ppc64el (3.12.2-1) ... 118s Selecting previously unselected package libgeos-c1t64:ppc64el. 118s Preparing to unpack .../030-libgeos-c1t64_3.12.2-1_ppc64el.deb ... 118s Unpacking libgeos-c1t64:ppc64el (3.12.2-1) ... 118s Selecting previously unselected package proj-data. 118s Preparing to unpack .../031-proj-data_9.4.1-1_all.deb ... 118s Unpacking proj-data (9.4.1-1) ... 118s Selecting previously unselected package libjbig0:ppc64el. 118s Preparing to unpack .../032-libjbig0_2.1-6.1ubuntu2_ppc64el.deb ... 118s Unpacking libjbig0:ppc64el (2.1-6.1ubuntu2) ... 118s Selecting previously unselected package libjpeg-turbo8:ppc64el. 118s Preparing to unpack .../033-libjpeg-turbo8_2.1.5-2ubuntu2_ppc64el.deb ... 118s Unpacking libjpeg-turbo8:ppc64el (2.1.5-2ubuntu2) ... 118s Selecting previously unselected package libjpeg8:ppc64el. 118s Preparing to unpack .../034-libjpeg8_8c-2ubuntu11_ppc64el.deb ... 118s Unpacking libjpeg8:ppc64el (8c-2ubuntu11) ... 118s Selecting previously unselected package liblerc4:ppc64el. 118s Preparing to unpack .../035-liblerc4_4.0.0+ds-4ubuntu2_ppc64el.deb ... 118s Unpacking liblerc4:ppc64el (4.0.0+ds-4ubuntu2) ... 118s Selecting previously unselected package libsharpyuv0:ppc64el. 118s Preparing to unpack .../036-libsharpyuv0_1.4.0-0.1_ppc64el.deb ... 118s Unpacking libsharpyuv0:ppc64el (1.4.0-0.1) ... 118s Selecting previously unselected package libwebp7:ppc64el. 118s Preparing to unpack .../037-libwebp7_1.4.0-0.1_ppc64el.deb ... 118s Unpacking libwebp7:ppc64el (1.4.0-0.1) ... 118s Selecting previously unselected package libtiff6:ppc64el. 118s Preparing to unpack .../038-libtiff6_4.5.1+git230720-4ubuntu4_ppc64el.deb ... 118s Unpacking libtiff6:ppc64el (4.5.1+git230720-4ubuntu4) ... 118s Selecting previously unselected package libproj25:ppc64el. 118s Preparing to unpack .../039-libproj25_9.4.1-1_ppc64el.deb ... 118s Unpacking libproj25:ppc64el (9.4.1-1) ... 118s Selecting previously unselected package libgeotiff5:ppc64el. 118s Preparing to unpack .../040-libgeotiff5_1.7.3-1_ppc64el.deb ... 118s Unpacking libgeotiff5:ppc64el (1.7.3-1) ... 118s Selecting previously unselected package libgif7:ppc64el. 118s Preparing to unpack .../041-libgif7_5.2.2-1ubuntu1_ppc64el.deb ... 118s Unpacking libgif7:ppc64el (5.2.2-1ubuntu1) ... 118s Selecting previously unselected package libsz2:ppc64el. 118s Preparing to unpack .../042-libsz2_1.1.3-1_ppc64el.deb ... 118s Unpacking libsz2:ppc64el (1.1.3-1) ... 118s Selecting previously unselected package libhdf4-0-alt:ppc64el. 118s Preparing to unpack .../043-libhdf4-0-alt_4.3.0-1_ppc64el.deb ... 118s Unpacking libhdf4-0-alt:ppc64el (4.3.0-1) ... 118s Selecting previously unselected package libhdf5-103-1t64:ppc64el. 118s Preparing to unpack .../044-libhdf5-103-1t64_1.10.10+repack-4ubuntu3_ppc64el.deb ... 118s Unpacking libhdf5-103-1t64:ppc64el (1.10.10+repack-4ubuntu3) ... 118s Selecting previously unselected package libheif-plugin-aomdec:ppc64el. 118s Preparing to unpack .../045-libheif-plugin-aomdec_1.18.1-2_ppc64el.deb ... 118s Unpacking libheif-plugin-aomdec:ppc64el (1.18.1-2) ... 118s Selecting previously unselected package libheif-plugin-libde265:ppc64el. 118s Preparing to unpack .../046-libheif-plugin-libde265_1.18.1-2_ppc64el.deb ... 118s Unpacking libheif-plugin-libde265:ppc64el (1.18.1-2) ... 118s Selecting previously unselected package libheif1:ppc64el. 118s Preparing to unpack .../047-libheif1_1.18.1-2_ppc64el.deb ... 118s Unpacking libheif1:ppc64el (1.18.1-2) ... 118s Selecting previously unselected package liburiparser1:ppc64el. 118s Preparing to unpack .../048-liburiparser1_0.9.8+dfsg-1_ppc64el.deb ... 118s Unpacking liburiparser1:ppc64el (0.9.8+dfsg-1) ... 118s Selecting previously unselected package libkmlbase1t64:ppc64el. 118s Preparing to unpack .../049-libkmlbase1t64_1.3.0-12build1_ppc64el.deb ... 118s Unpacking libkmlbase1t64:ppc64el (1.3.0-12build1) ... 118s Selecting previously unselected package libkmldom1t64:ppc64el. 118s Preparing to unpack .../050-libkmldom1t64_1.3.0-12build1_ppc64el.deb ... 118s Unpacking libkmldom1t64:ppc64el (1.3.0-12build1) ... 118s Selecting previously unselected package libkmlengine1t64:ppc64el. 118s Preparing to unpack .../051-libkmlengine1t64_1.3.0-12build1_ppc64el.deb ... 118s Unpacking libkmlengine1t64:ppc64el (1.3.0-12build1) ... 118s Selecting previously unselected package mysql-common. 118s Preparing to unpack .../052-mysql-common_5.8+1.1.1_all.deb ... 118s Unpacking mysql-common (5.8+1.1.1) ... 118s Selecting previously unselected package libmysqlclient21:ppc64el. 118s Preparing to unpack .../053-libmysqlclient21_8.0.39-1_ppc64el.deb ... 118s Unpacking libmysqlclient21:ppc64el (8.0.39-1) ... 118s Selecting previously unselected package libhdf5-hl-100t64:ppc64el. 118s Preparing to unpack .../054-libhdf5-hl-100t64_1.10.10+repack-4ubuntu3_ppc64el.deb ... 118s Unpacking libhdf5-hl-100t64:ppc64el (1.10.10+repack-4ubuntu3) ... 118s Selecting previously unselected package libnetcdf19t64:ppc64el. 118s Preparing to unpack .../055-libnetcdf19t64_1%3a4.9.2-6ubuntu1_ppc64el.deb ... 118s Unpacking libnetcdf19t64:ppc64el (1:4.9.2-6ubuntu1) ... 118s Selecting previously unselected package libltdl7:ppc64el. 118s Preparing to unpack .../056-libltdl7_2.4.7-7build1_ppc64el.deb ... 118s Unpacking libltdl7:ppc64el (2.4.7-7build1) ... 118s Selecting previously unselected package libodbc2:ppc64el. 118s Preparing to unpack .../057-libodbc2_2.3.12-1ubuntu1_ppc64el.deb ... 118s Unpacking libodbc2:ppc64el (2.3.12-1ubuntu1) ... 118s Selecting previously unselected package unixodbc-common. 118s Preparing to unpack .../058-unixodbc-common_2.3.12-1ubuntu1_all.deb ... 118s Unpacking unixodbc-common (2.3.12-1ubuntu1) ... 118s Selecting previously unselected package libodbcinst2:ppc64el. 118s Preparing to unpack .../059-libodbcinst2_2.3.12-1ubuntu1_ppc64el.deb ... 118s Unpacking libodbcinst2:ppc64el (2.3.12-1ubuntu1) ... 118s Selecting previously unselected package libogdi4.1:ppc64el. 118s Preparing to unpack .../060-libogdi4.1_4.1.1+ds-5_ppc64el.deb ... 118s Unpacking libogdi4.1:ppc64el (4.1.1+ds-5) ... 118s Selecting previously unselected package libopenjp2-7:ppc64el. 118s Preparing to unpack .../061-libopenjp2-7_2.5.0-2ubuntu1_ppc64el.deb ... 118s Unpacking libopenjp2-7:ppc64el (2.5.0-2ubuntu1) ... 118s Selecting previously unselected package liblcms2-2:ppc64el. 118s Preparing to unpack .../062-liblcms2-2_2.14-2build1_ppc64el.deb ... 118s Unpacking liblcms2-2:ppc64el (2.14-2build1) ... 118s Selecting previously unselected package libpoppler140:ppc64el. 118s Preparing to unpack .../063-libpoppler140_24.08.0-1_ppc64el.deb ... 118s Unpacking libpoppler140:ppc64el (24.08.0-1) ... 119s Selecting previously unselected package libpq5:ppc64el. 119s Preparing to unpack .../064-libpq5_17.0-1_ppc64el.deb ... 119s Unpacking libpq5:ppc64el (17.0-1) ... 119s Selecting previously unselected package libqhull-r8.0:ppc64el. 119s Preparing to unpack .../065-libqhull-r8.0_2020.2-6build1_ppc64el.deb ... 119s Unpacking libqhull-r8.0:ppc64el (2020.2-6build1) ... 119s Selecting previously unselected package librttopo1:ppc64el. 119s Preparing to unpack .../066-librttopo1_1.1.0-3build2_ppc64el.deb ... 119s Unpacking librttopo1:ppc64el (1.1.0-3build2) ... 119s Selecting previously unselected package libspatialite8t64:ppc64el. 119s Preparing to unpack .../067-libspatialite8t64_5.1.0-3build1_ppc64el.deb ... 119s Unpacking libspatialite8t64:ppc64el (5.1.0-3build1) ... 119s Selecting previously unselected package libxerces-c3.2t64:ppc64el. 119s Preparing to unpack .../068-libxerces-c3.2t64_3.2.4+debian-1.3_ppc64el.deb ... 119s Unpacking libxerces-c3.2t64:ppc64el (3.2.4+debian-1.3) ... 119s Selecting previously unselected package libgdal35:ppc64el. 119s Preparing to unpack .../069-libgdal35_3.9.1+dfsg-1build2_ppc64el.deb ... 119s Unpacking libgdal35:ppc64el (3.9.1+dfsg-1build2) ... 119s Selecting previously unselected package libgomp1:ppc64el. 119s Preparing to unpack .../070-libgomp1_14.2.0-7ubuntu1_ppc64el.deb ... 119s Unpacking libgomp1:ppc64el (14.2.0-7ubuntu1) ... 119s Selecting previously unselected package libgraphite2-3:ppc64el. 119s Preparing to unpack .../071-libgraphite2-3_1.3.14-2ubuntu1_ppc64el.deb ... 119s Unpacking libgraphite2-3:ppc64el (1.3.14-2ubuntu1) ... 119s Selecting previously unselected package libharfbuzz0b:ppc64el. 119s Preparing to unpack .../072-libharfbuzz0b_9.0.0-1_ppc64el.deb ... 119s Unpacking libharfbuzz0b:ppc64el (9.0.0-1) ... 119s Selecting previously unselected package x11-common. 119s Preparing to unpack .../073-x11-common_1%3a7.7+23ubuntu3_all.deb ... 119s Unpacking x11-common (1:7.7+23ubuntu3) ... 119s Selecting previously unselected package libice6:ppc64el. 119s Preparing to unpack .../074-libice6_2%3a1.0.10-1build3_ppc64el.deb ... 119s Unpacking libice6:ppc64el (2:1.0.10-1build3) ... 119s Selecting previously unselected package libthai-data. 119s Preparing to unpack .../075-libthai-data_0.1.29-2build1_all.deb ... 119s Unpacking libthai-data (0.1.29-2build1) ... 119s Selecting previously unselected package libthai0:ppc64el. 119s Preparing to unpack .../076-libthai0_0.1.29-2build1_ppc64el.deb ... 119s Unpacking libthai0:ppc64el (0.1.29-2build1) ... 119s Selecting previously unselected package libpango-1.0-0:ppc64el. 119s Preparing to unpack .../077-libpango-1.0-0_1.54.0+ds-2_ppc64el.deb ... 119s Unpacking libpango-1.0-0:ppc64el (1.54.0+ds-2) ... 119s Selecting previously unselected package libpangoft2-1.0-0:ppc64el. 119s Preparing to unpack .../078-libpangoft2-1.0-0_1.54.0+ds-2_ppc64el.deb ... 119s Unpacking libpangoft2-1.0-0:ppc64el (1.54.0+ds-2) ... 119s Selecting previously unselected package libpangocairo-1.0-0:ppc64el. 119s Preparing to unpack .../079-libpangocairo-1.0-0_1.54.0+ds-2_ppc64el.deb ... 119s Unpacking libpangocairo-1.0-0:ppc64el (1.54.0+ds-2) ... 119s Selecting previously unselected package libpaper1:ppc64el. 119s Preparing to unpack .../080-libpaper1_1.1.29build1_ppc64el.deb ... 119s Unpacking libpaper1:ppc64el (1.1.29build1) ... 119s Selecting previously unselected package libpaper-utils. 119s Preparing to unpack .../081-libpaper-utils_1.1.29build1_ppc64el.deb ... 119s Unpacking libpaper-utils (1.1.29build1) ... 119s Selecting previously unselected package libsm6:ppc64el. 119s Preparing to unpack .../082-libsm6_2%3a1.2.3-1build3_ppc64el.deb ... 119s Unpacking libsm6:ppc64el (2:1.2.3-1build3) ... 119s Selecting previously unselected package libtcl8.6:ppc64el. 119s Preparing to unpack .../083-libtcl8.6_8.6.14+dfsg-1build1_ppc64el.deb ... 119s Unpacking libtcl8.6:ppc64el (8.6.14+dfsg-1build1) ... 119s Selecting previously unselected package libxft2:ppc64el. 119s Preparing to unpack .../084-libxft2_2.3.6-1build1_ppc64el.deb ... 119s Unpacking libxft2:ppc64el (2.3.6-1build1) ... 119s Selecting previously unselected package libxss1:ppc64el. 119s Preparing to unpack .../085-libxss1_1%3a1.2.3-1build3_ppc64el.deb ... 119s Unpacking libxss1:ppc64el (1:1.2.3-1build3) ... 119s Selecting previously unselected package libtk8.6:ppc64el. 119s Preparing to unpack .../086-libtk8.6_8.6.14-1build1_ppc64el.deb ... 119s Unpacking libtk8.6:ppc64el (8.6.14-1build1) ... 119s Selecting previously unselected package libudunits2-data. 119s Preparing to unpack .../087-libudunits2-data_2.2.28-7build1_all.deb ... 119s Unpacking libudunits2-data (2.2.28-7build1) ... 119s Selecting previously unselected package libudunits2-0. 119s Preparing to unpack .../088-libudunits2-0_2.2.28-7build1_ppc64el.deb ... 119s Unpacking libudunits2-0 (2.2.28-7build1) ... 119s Selecting previously unselected package libxt6t64:ppc64el. 119s Preparing to unpack .../089-libxt6t64_1%3a1.2.1-1.2build1_ppc64el.deb ... 119s Unpacking libxt6t64:ppc64el (1:1.2.1-1.2build1) ... 119s Selecting previously unselected package zip. 119s Preparing to unpack .../090-zip_3.0-14_ppc64el.deb ... 119s Unpacking zip (3.0-14) ... 119s Selecting previously unselected package unzip. 119s Preparing to unpack .../091-unzip_6.0-28ubuntu6_ppc64el.deb ... 119s Unpacking unzip (6.0-28ubuntu6) ... 119s Selecting previously unselected package xdg-utils. 119s Preparing to unpack .../092-xdg-utils_1.2.1-0ubuntu1_all.deb ... 119s Unpacking xdg-utils (1.2.1-0ubuntu1) ... 119s Selecting previously unselected package r-base-core. 119s Preparing to unpack .../093-r-base-core_4.4.1-1_ppc64el.deb ... 119s Unpacking r-base-core (4.4.1-1) ... 120s Selecting previously unselected package r-cran-littler. 120s Preparing to unpack .../094-r-cran-littler_0.3.20-1_ppc64el.deb ... 120s Unpacking r-cran-littler (0.3.20-1) ... 120s Selecting previously unselected package littler. 120s Preparing to unpack .../095-littler_0.3.20-1_all.deb ... 120s Unpacking littler (0.3.20-1) ... 120s Selecting previously unselected package r-cran-abind. 120s Preparing to unpack .../096-r-cran-abind_1.4-5-2_all.deb ... 120s Unpacking r-cran-abind (1.4-5-2) ... 120s Selecting previously unselected package r-cran-mass. 120s Preparing to unpack .../097-r-cran-mass_7.3-61-1_ppc64el.deb ... 120s Unpacking r-cran-mass (7.3-61-1) ... 120s Selecting previously unselected package r-cran-class. 120s Preparing to unpack .../098-r-cran-class_7.3-22-2build1_ppc64el.deb ... 120s Unpacking r-cran-class (7.3-22-2build1) ... 120s Selecting previously unselected package r-cran-proxy. 120s Preparing to unpack .../099-r-cran-proxy_0.4-27-1_ppc64el.deb ... 120s Unpacking r-cran-proxy (0.4-27-1) ... 120s Selecting previously unselected package r-cran-e1071. 120s Preparing to unpack .../100-r-cran-e1071_1.7-14-1_ppc64el.deb ... 120s Unpacking r-cran-e1071 (1.7-14-1) ... 120s Selecting previously unselected package r-cran-kernsmooth. 120s Preparing to unpack .../101-r-cran-kernsmooth_2.23-24-1_ppc64el.deb ... 120s Unpacking r-cran-kernsmooth (2.23-24-1) ... 120s Selecting previously unselected package r-cran-classint. 120s Preparing to unpack .../102-r-cran-classint_0.4-10+dfsg-1_ppc64el.deb ... 120s Unpacking r-cran-classint (0.4-10+dfsg-1) ... 120s Selecting previously unselected package r-cran-codetools. 120s Preparing to unpack .../103-r-cran-codetools_0.2-20-1_all.deb ... 120s Unpacking r-cran-codetools (0.2-20-1) ... 120s Selecting previously unselected package r-cran-dbi. 120s Preparing to unpack .../104-r-cran-dbi_1.2.3-1_all.deb ... 120s Unpacking r-cran-dbi (1.2.3-1) ... 120s Selecting previously unselected package r-cran-digest. 120s Preparing to unpack .../105-r-cran-digest_0.6.36-1_ppc64el.deb ... 120s Unpacking r-cran-digest (0.6.36-1) ... 120s Selecting previously unselected package r-cran-dotcall64. 120s Preparing to unpack .../106-r-cran-dotcall64_1.1-1-1_ppc64el.deb ... 120s Unpacking r-cran-dotcall64 (1.1-1-1) ... 120s Selecting previously unselected package r-cran-pkgkitten. 120s Preparing to unpack .../107-r-cran-pkgkitten_0.2.4-1_all.deb ... 120s Unpacking r-cran-pkgkitten (0.2.4-1) ... 120s Selecting previously unselected package r-cran-rcpp. 120s Preparing to unpack .../108-r-cran-rcpp_1.0.13-1_ppc64el.deb ... 120s Unpacking r-cran-rcpp (1.0.13-1) ... 120s Selecting previously unselected package r-cran-spam. 120s Preparing to unpack .../109-r-cran-spam_2.10-0-1_ppc64el.deb ... 120s Unpacking r-cran-spam (2.10-0-1) ... 120s Selecting previously unselected package r-cran-viridislite. 120s Preparing to unpack .../110-r-cran-viridislite_0.4.2-2_all.deb ... 120s Unpacking r-cran-viridislite (0.4.2-2) ... 120s Selecting previously unselected package r-cran-maps. 120s Preparing to unpack .../111-r-cran-maps_3.4.2-1_ppc64el.deb ... 120s Unpacking r-cran-maps (3.4.2-1) ... 120s Selecting previously unselected package r-cran-fields. 120s Preparing to unpack .../112-r-cran-fields_16.2-1_ppc64el.deb ... 120s Unpacking r-cran-fields (16.2-1) ... 120s Selecting previously unselected package r-cran-fnn. 120s Preparing to unpack .../113-r-cran-fnn_1.1.4-1_ppc64el.deb ... 120s Unpacking r-cran-fnn (1.1.4-1) ... 120s Selecting previously unselected package r-cran-globals. 120s Preparing to unpack .../114-r-cran-globals_0.16.3-1_all.deb ... 120s Unpacking r-cran-globals (0.16.3-1) ... 120s Selecting previously unselected package r-cran-listenv. 120s Preparing to unpack .../115-r-cran-listenv_0.9.1+dfsg-1_all.deb ... 120s Unpacking r-cran-listenv (0.9.1+dfsg-1) ... 120s Selecting previously unselected package r-cran-parallelly. 120s Preparing to unpack .../116-r-cran-parallelly_1.37.1-1build1_ppc64el.deb ... 120s Unpacking r-cran-parallelly (1.37.1-1build1) ... 120s Selecting previously unselected package r-cran-future. 120s Preparing to unpack .../117-r-cran-future_1.33.1+dfsg-1_all.deb ... 120s Unpacking r-cran-future (1.33.1+dfsg-1) ... 120s Selecting previously unselected package r-cran-future.apply. 120s Preparing to unpack .../118-r-cran-future.apply_1.11.2+dfsg-1_all.deb ... 120s Unpacking r-cran-future.apply (1.11.2+dfsg-1) ... 121s Selecting previously unselected package r-cran-lattice. 121s Preparing to unpack .../119-r-cran-lattice_0.22-6-1_ppc64el.deb ... 121s Unpacking r-cran-lattice (0.22-6-1) ... 121s Selecting previously unselected package r-cran-sp. 121s Preparing to unpack .../120-r-cran-sp_1%3a2.1-2+dfsg-1_ppc64el.deb ... 121s Unpacking r-cran-sp (1:2.1-2+dfsg-1) ... 121s Selecting previously unselected package r-cran-zoo. 121s Preparing to unpack .../121-r-cran-zoo_1.8-12-2_ppc64el.deb ... 121s Unpacking r-cran-zoo (1.8-12-2) ... 121s Selecting previously unselected package 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run-unit-test: [----------------------- 132s BEGIN TEST allier.R 132s 132s R version 4.4.1 (2024-06-14) -- "Race for Your Life" 132s Copyright (C) 2024 The R Foundation for Statistical Computing 132s Platform: powerpc64le-unknown-linux-gnu 132s 132s R is free software and comes with ABSOLUTELY NO WARRANTY. 132s You are welcome to redistribute it under certain conditions. 132s Type 'license()' or 'licence()' for distribution details. 132s 132s R is a collaborative project with many contributors. 132s Type 'contributors()' for more information and 132s 'citation()' on how to cite R or R packages in publications. 132s 132s Type 'demo()' for some demos, 'help()' for on-line help, or 132s 'help.start()' for an HTML browser interface to help. 132s Type 'q()' to quit R. 132s 132s > # Sytze de Bruin's post to r-sig-geo, Nov 16, 2015: 132s > library(sp) 133s > library(gstat) 133s > 133s > # some data 133s > x <- c(215, 330, 410, 470, 545) 133s > y <- c(230, 310, 330, 340, 365) 133s > fc <- c(0.211, 0.251, 0.281, 0.262, 0.242) 133s > por <- c(0.438, 0.457, 0.419, 0.430, 0.468) 133s > Allier <- data.frame(x, y, fc, por) 133s > coordinates(Allier) = ~x+y 133s > 133s > # gstat object for co-kriging using linear model of co-regionalization 133s > g <- gstat(id=c("fc"), formula=fc~1, data=Allier, 133s + model=vgm(0.00247, "Sph", 480, 0.00166)) 133s > g <- gstat(g, id="por", formula=por~1, data=Allier, 133s + model=vgm(0.00239, "Sph", 480, 0.00118)) 133s > g <- gstat(g, id=c("fc", "por"), 133s + model=vgm(0.00151, "Sph", 480, -0.00124)) 133s > 133s > # predict at single point 133s > g$set = list(choleski = 0) # LDL' 133s > A <- predict(g, SpatialPoints(data.frame(x=450, y=350)), debug = 32) 133s Linear Model of Coregionalization found. Good. 133s [using ordinary cokriging] 133s we're at location X: 450 Y: 350 Z: 0 133s zero block size 133s we're at point X: 450 Y: 350 Z: 0 133s 133s # X: 133s #Matrix: 10 by 2 133s rbind( 133s c( 1.000000, 0.000000), # row 1 133s c( 1.000000, 0.000000), # row 2 133s c( 1.000000, 0.000000), # row 3 133s c( 1.000000, 0.000000), # row 4 133s c( 1.000000, 0.000000), # row 5 133s c( 0.000000, 1.000000), # row 6 133s c( 0.000000, 1.000000), # row 7 133s c( 0.000000, 1.000000), # row 8 133s c( 0.000000, 1.000000), # row 9 133s c( 0.000000, 1.000000) # row 10 133s ) 133s [using generalized covariances: max_val - semivariance()] 133s # Covariances (x_i, x_j) matrix C (upper triangle): 133s #Matrix: 10 by 10 133s rbind( 133s c( 0.004130, 0.001419, 0.000896, 0.000566, 0.000224, 0.000270, 0.000868, 0.000548, 0.000346, 0.000137), # row 1 133s c( 0.001419, 0.004130, 0.001840, 0.001398, 0.000879, 0.000868, 0.000270, 0.001125, 0.000854, 0.000537), # row 2 133s c( 0.000896, 0.001840, 0.004130, 0.002003, 0.001424, 0.000548, 0.001125, 0.000270, 0.001225, 0.000870), # row 3 133s c( 0.000566, 0.001398, 0.002003, 0.004130, 0.001865, 0.000346, 0.000854, 0.001225, 0.000270, 0.001140), # row 4 133s c( 0.000224, 0.000879, 0.001424, 0.001865, 0.004130, 0.000137, 0.000537, 0.000870, 0.001140, 0.000270), # row 5 133s c( 0.000270, 0.000868, 0.000548, 0.000346, 0.000137, 0.003570, 0.001373, 0.000867, 0.000547, 0.000217), # row 6 133s c( 0.000868, 0.000270, 0.001125, 0.000854, 0.000537, 0.001373, 0.003570, 0.001780, 0.001352, 0.000851), # row 7 133s c( 0.000548, 0.001125, 0.000270, 0.001225, 0.000870, 0.000867, 0.001780, 0.003570, 0.001938, 0.001378), # row 8 133s c( 0.000346, 0.000854, 0.001225, 0.000270, 0.001140, 0.000547, 0.001352, 0.001938, 0.003570, 0.001805), # row 9 133s c( 0.000137, 0.000537, 0.000870, 0.001140, 0.000270, 0.000217, 0.000851, 0.001378, 0.001805, 0.003570) # row 10 133s ) 133s 133s # glm->C, LDL' decomposed:: 133s #Matrix: 10 by 10 133s rbind( 133s c( 0.003399, 0.372269, 0.208612, 0.127967, 0.016746, -0.025847, 0.223862, 0.148767, 0.104047, 0.038371), # row 1 133s c( 0.000000, 0.002661, 0.483725, 0.327484, 0.153742, 0.233021, -0.125118, 0.262410, 0.219271, 0.150536), # row 2 133s c( 0.000000, 0.000000, 0.002276, 0.540203, 0.303585, 0.058071, 0.314376, -0.175899, 0.295181, 0.243817), # row 3 133s c( 0.000000, 0.000000, 0.000000, 0.002484, 0.483068, 0.000301, 0.115816, 0.377362, -0.115338, 0.319418), # row 4 133s c( 0.000000, 0.000000, 0.000000, 0.000000, 0.003690, -0.038142, 0.000474, 0.120915, 0.377730, 0.075630), # row 5 133s c( 0.000000, 0.000000, 0.000000, 0.000000, 0.000000, 0.003019, 0.354325, 0.235465, 0.164684, 0.060733), # row 6 133s c( 0.000000, 0.000000, 0.000000, 0.000000, 0.000000, 0.000000, 0.002623, 0.415337, 0.347059, 0.238266), # row 7 133s c( 0.000000, 0.000000, 0.000000, 0.000000, 0.000000, 0.000000, 0.000000, 0.002458, 0.467207, 0.385909), # row 8 133s c( 0.000000, 0.000000, 0.000000, 0.000000, 0.000000, 0.000000, 0.000000, 0.000000, 0.002658, 0.505569), # row 9 133s c( 0.000000, 0.000000, 0.000000, 0.000000, 0.000000, 0.000000, 0.000000, 0.000000, 0.000000, 0.003570) # row 10 133s ) 133s 133s # X'C-1 X: 133s #Matrix: 2 by 2 133s rbind( 133s c(665.433994, -232.313340), # row 1 133s c(-232.313340, 729.440848) # row 2 133s ) 133s 133s # beta: 133s #Vector: dim: 2 133s c( 0.244216, 0.440933) 133s # Cov(beta), (X'C-1 X)-1: 133s #Matrix: 2 by 2 133s rbind( 133s c( 0.001691, 0.000538), # row 1 133s c( 0.000538, 0.001542) # row 2 133s ) 133s 133s # Corr(beta): 133s #Matrix: 2 by 2 133s rbind( 133s c( 1.000000, 0.333447), # row 1 133s c( 0.333447, 1.000000) # row 2 133s ) 133s 133s # X0 (X values at prediction location x0): 133s #Matrix: 2 by 2 133s rbind( 133s c( 1.000000, 0.000000), # row 1 133s c( 0.000000, 1.000000) # row 2 133s ) 133s 133s # BLUE(mu), E(y(x0)) = X0'beta: 133s #Vector: dim: 2 133s c( 0.244216, 0.440933) 133s # Covariances (x_i, x_0), C0: 133s #Matrix: 10 by 2 133s rbind( 133s c( 0.000638, 0.000390), # row 1 133s c( 0.001516, 0.000927), # row 2 133s c( 0.002126, 0.001300), # row 3 133s c( 0.002298, 0.001405), # row 4 133s c( 0.001738, 0.001062), # row 5 133s c( 0.000390, 0.000618), # row 6 133s c( 0.000927, 0.001467), # row 7 133s c( 0.001300, 0.002057), # row 8 133s c( 0.001405, 0.002223), # row 9 133s c( 0.001062, 0.001681) # row 10 133s ) 133s 133s # C-1 C0: 133s #Matrix: 10 by 2 133s rbind( 133s c( 0.008927, -0.017995), # row 1 133s c( 0.061935, -0.028550), # row 2 133s c( 0.225195, 0.078344), # row 3 133s c( 0.356735, 0.190177), # row 4 133s c( 0.094128, -0.023136), # row 5 133s c(-0.021119, 0.004935), # row 6 133s c(-0.033508, 0.055601), # row 7 133s c( 0.091947, 0.242576), # row 8 133s c( 0.223200, 0.398927), # row 9 133s c(-0.027153, 0.088995) # row 10 133s ) 133s 133s # [a] Cov_ij(B,B) or Cov_ij(0,0): 133s #Matrix: 2 by 2 133s rbind( 133s c( 0.004130, 0.000270), # row 1 133s c( 0.000270, 0.003570) # row 2 133s ) 133s 133s # [c] (x0-X'C-1 c0)'(X'C-1 X)-1(x0-X'C-1 c0): 133s #Matrix: 2 by 2 133s rbind( 133s c( 0.000129, -0.000107), # row 1 133s c(-0.000107, 0.000089) # row 2 133s ) 133s 133s # [b] c0'C-1 c0: 133s #Matrix: 2 by 2 133s rbind( 133s c( 0.001926, 0.001532), # row 1 133s c( 0.001532, 0.001931) # row 2 133s ) 133s 133s # Best Linear Unbiased Predictor: 133s #Vector: dim: 2 133s c( 0.253090, 0.441258) 133s # MSPE ([a]-[b]+[c]): 133s #Matrix: 2 by 2 133s rbind( 133s c( 0.002332, -0.001369), # row 1 133s c(-0.001369, 0.001729) # row 2 133s ) 133s 133s # kriging weights: 133s #Matrix: 10 by 2 133s rbind( 133s c( 0.071177, -0.064988), # row 1 133s c( 0.108451, -0.066123), # row 2 133s c( 0.268160, 0.043141), # row 3 133s c( 0.401959, 0.153312), # row 4 133s c( 0.150253, -0.065342), # row 5 133s c(-0.076273, 0.056759), # row 6 133s c(-0.077605, 0.093781), # row 7 133s c( 0.050632, 0.277731), # row 8 133s c( 0.179933, 0.435972), # row 9 133s c(-0.076688, 0.135756) # row 10 133s ) 133s 133s 133s > g$set = list(choleski = 1) # Choleski 133s > B <- predict(g, SpatialPoints(data.frame(x=450, y=350)), debug = 32) 134s Linear Model of Coregionalization found. Good. 134s [using ordinary cokriging] 134s we're at location X: 450 Y: 350 Z: 0 134s zero block size 134s we're at point X: 450 Y: 350 Z: 0 134s 134s # X: 134s #Matrix: 10 by 2 134s rbind( 134s c( 1.000000, 0.000000), # row 1 134s c( 1.000000, 0.000000), # row 2 134s c( 1.000000, 0.000000), # row 3 134s c( 1.000000, 0.000000), # row 4 134s c( 1.000000, 0.000000), # row 5 134s c( 0.000000, 1.000000), # row 6 134s c( 0.000000, 1.000000), # row 7 134s c( 0.000000, 1.000000), # row 8 134s c( 0.000000, 1.000000), # row 9 134s c( 0.000000, 1.000000) # row 10 134s ) 134s [using generalized covariances: max_val - semivariance()] 134s # Covariances (x_i, x_j) matrix C (upper triangle): 134s #Matrix: 10 by 10 134s rbind( 134s c( 0.004130, 0.001419, 0.000896, 0.000566, 0.000224, 0.000270, 0.000868, 0.000548, 0.000346, 0.000137), # row 1 134s c( 0.001419, 0.004130, 0.001840, 0.001398, 0.000879, 0.000868, 0.000270, 0.001125, 0.000854, 0.000537), # row 2 134s c( 0.000896, 0.001840, 0.004130, 0.002003, 0.001424, 0.000548, 0.001125, 0.000270, 0.001225, 0.000870), # row 3 134s c( 0.000566, 0.001398, 0.002003, 0.004130, 0.001865, 0.000346, 0.000854, 0.001225, 0.000270, 0.001140), # row 4 134s c( 0.000224, 0.000879, 0.001424, 0.001865, 0.004130, 0.000137, 0.000537, 0.000870, 0.001140, 0.000270), # row 5 134s c( 0.000270, 0.000868, 0.000548, 0.000346, 0.000137, 0.003570, 0.001373, 0.000867, 0.000547, 0.000217), # row 6 134s c( 0.000868, 0.000270, 0.001125, 0.000854, 0.000537, 0.001373, 0.003570, 0.001780, 0.001352, 0.000851), # row 7 134s c( 0.000548, 0.001125, 0.000270, 0.001225, 0.000870, 0.000867, 0.001780, 0.003570, 0.001938, 0.001378), # row 8 134s c( 0.000346, 0.000854, 0.001225, 0.000270, 0.001140, 0.000547, 0.001352, 0.001938, 0.003570, 0.001805), # row 9 134s c( 0.000137, 0.000537, 0.000870, 0.001140, 0.000270, 0.000217, 0.000851, 0.001378, 0.001805, 0.003570) # row 10 134s ) 134s 134s # glm->C, Choleski decomposed:: 134s #Matrix: 10 by 10 134s rbind( 134s c( 0.064265, 0.022086, 0.013942, 0.008801, 0.003487, 0.004201, 0.013502, 0.008523, 0.005380, 0.002132), # row 1 134s c( 0.000000, 0.060351, 0.025382, 0.019938, 0.013290, 0.012840, -0.000468, 0.015517, 0.012189, 0.008125), # row 2 134s c( 0.000000, 0.000000, 0.057370, 0.023954, 0.018091, 0.002846, 0.016530, -0.004230, 0.014644, 0.011059), # row 3 134s c( 0.000000, 0.000000, 0.000000, 0.055509, 0.020471, -0.000277, 0.006286, 0.016960, -0.006686, 0.012514), # row 4 134s c( 0.000000, 0.000000, 0.000000, 0.000000, 0.056523, -0.001665, 0.001218, 0.006437, 0.014711, -0.005337), # row 5 134s c( 0.000000, 0.000000, 0.000000, 0.000000, 0.000000, 0.058108, 0.022018, 0.011347, 0.006008, 0.001147), # row 6 134s c( 0.000000, 0.000000, 0.000000, 0.000000, 0.000000, 0.000000, 0.050877, 0.027084, 0.018381, 0.010720), # row 7 134s c( 0.000000, 0.000000, 0.000000, 0.000000, 0.000000, 0.000000, 0.000000, 0.045247, 0.026914, 0.017658), # row 8 134s c( 0.000000, 0.000000, 0.000000, 0.000000, 0.000000, 0.000000, 0.000000, 0.000000, 0.042645, 0.023811), # row 9 134s c( 0.000000, 0.000000, 0.000000, 0.000000, 0.000000, 0.000000, 0.000000, 0.000000, 0.000000, 0.046872) # row 10 134s ) 134s 134s # X'C-1 X: 134s #Matrix: 2 by 2 134s rbind( 134s c(665.433994, -232.313340), # row 1 134s c(-232.313340, 729.440848) # row 2 134s ) 134s 134s # beta: 134s #Vector: dim: 2 134s c( 0.244216, 0.440933) 134s # Cov(beta), (X'C-1 X)-1: 134s #Matrix: 2 by 2 134s rbind( 134s c( 0.001691, 0.000538), # row 1 134s c( 0.000538, 0.001542) # row 2 134s ) 134s 134s # Corr(beta): 134s #Matrix: 2 by 2 134s rbind( 134s c( 1.000000, 0.333447), # row 1 134s c( 0.333447, 1.000000) # row 2 134s ) 134s 134s # X0 (X values at prediction location x0): 134s #Matrix: 2 by 2 134s rbind( 134s c( 1.000000, 0.000000), # row 1 134s c( 0.000000, 1.000000) # row 2 134s ) 134s 134s # BLUE(mu), E(y(x0)) = X0'beta: 134s #Vector: dim: 2 134s c( 0.244216, 0.440933) 134s # Covariances (x_i, x_0), C0: 134s #Matrix: 10 by 2 134s rbind( 134s c( 0.000638, 0.000390), # row 1 134s c( 0.001516, 0.000927), # row 2 134s c( 0.002126, 0.001300), # row 3 134s c( 0.002298, 0.001405), # row 4 134s c( 0.001738, 0.001062), # row 5 134s c( 0.000390, 0.000618), # row 6 134s c( 0.000927, 0.001467), # row 7 134s c( 0.001300, 0.002057), # row 8 134s c( 0.001405, 0.002223), # row 9 134s c( 0.001062, 0.001681) # row 10 134s ) 134s 134s # C-1 C0: 134s #Matrix: 10 by 2 134s rbind( 134s c( 0.008927, -0.017995), # row 1 134s c( 0.061935, -0.028550), # row 2 134s c( 0.225195, 0.078344), # row 3 134s c( 0.356735, 0.190177), # row 4 134s c( 0.094128, -0.023136), # row 5 134s c(-0.021119, 0.004935), # row 6 134s c(-0.033508, 0.055601), # row 7 134s c( 0.091947, 0.242576), # row 8 134s c( 0.223200, 0.398927), # row 9 134s c(-0.027153, 0.088995) # row 10 134s ) 134s 134s # [a] Cov_ij(B,B) or Cov_ij(0,0): 134s #Matrix: 2 by 2 134s rbind( 134s c( 0.004130, 0.000270), # row 1 134s c( 0.000270, 0.003570) # row 2 134s ) 134s 134s # [c] (x0-X'C-1 c0)'(X'C-1 X)-1(x0-X'C-1 c0): 134s #Matrix: 2 by 2 134s rbind( 134s c( 0.000129, -0.000107), # row 1 134s c(-0.000107, 0.000089) # row 2 134s ) 134s 134s # [b] c0'C-1 c0: 134s #Matrix: 2 by 2 134s rbind( 134s c( 0.001926, 0.001532), # row 1 134s c( 0.001532, 0.001931) # row 2 134s ) 134s 134s # Best Linear Unbiased Predictor: 134s #Vector: dim: 2 134s c( 0.253090, 0.441258) 134s # MSPE ([a]-[b]+[c]): 134s #Matrix: 2 by 2 134s rbind( 134s c( 0.002332, -0.001369), # row 1 134s c(-0.001369, 0.001729) # row 2 134s ) 134s 134s # kriging weights: 134s #Matrix: 10 by 2 134s rbind( 134s c( 0.071177, -0.064988), # row 1 134s c( 0.108451, -0.066123), # row 2 134s c( 0.268160, 0.043141), # row 3 134s c( 0.401959, 0.153312), # row 4 134s c( 0.150253, -0.065342), # row 5 134s c(-0.076273, 0.056759), # row 6 134s c(-0.077605, 0.093781), # row 7 134s c( 0.050632, 0.277731), # row 8 134s c( 0.179933, 0.435972), # row 9 134s c(-0.076688, 0.135756) # row 10 134s ) 134s 134s 134s > all.equal(A,B) 134s [1] TRUE 134s > 134s > # TRUE 134s > 134s BEGIN TEST blockkr.R 134s 134s R version 4.4.1 (2024-06-14) -- "Race for Your Life" 134s Copyright (C) 2024 The R Foundation for Statistical Computing 134s Platform: powerpc64le-unknown-linux-gnu 134s 134s R is free software and comes with ABSOLUTELY NO WARRANTY. 134s You are welcome to redistribute it under certain conditions. 134s Type 'license()' or 'licence()' for distribution details. 134s 134s R is a collaborative project with many contributors. 134s Type 'contributors()' for more information and 134s 'citation()' on how to cite R or R packages in publications. 134s 134s Type 'demo()' for some demos, 'help()' for on-line help, or 134s 'help.start()' for an HTML browser interface to help. 134s Type 'q()' to quit R. 134s 134s > library(sp) 134s > data(meuse) 134s > coordinates(meuse) = c("x", "y") 134s > new.locs <- SpatialPoints(data.frame( 134s + x = c(181170, 180310, 180205, 178673, 178770, 178270), 134s + y = c(333250, 332189, 331707, 330066, 330675, 331075))) 134s > library(gstat) 134s > krige(zinc ~ 1, meuse, new.locs, vgm(1.34e5, "Sph", 800, nug = 2.42e4), 134s + block = c(40,40), nmax = 40) 135s [using ordinary kriging] 135s coordinates var1.pred var1.var 135s 1 (181170, 333250) 268.7576 19447.67 135s 2 (180310, 332189) 663.4915 16991.33 135s 3 (180205, 331707) 251.4606 21579.71 135s 4 (178673, 330066) 532.5776 73807.91 135s 5 (178770, 330675) 664.4039 23589.17 135s 6 (178270, 331075) 565.5436 155113.23 135s > 135s > new.locs <- SpatialPoints(data.frame(x = c(181170), y = c(333250))) 135s > 135s > disc = c(-15,-5,5,15) 135s > block.irreg <- data.frame(expand.grid(x = disc, y = disc)) 135s > block.irreg 135s x y 135s 1 -15 -15 135s 2 -5 -15 135s 3 5 -15 135s 4 15 -15 135s 5 -15 -5 135s 6 -5 -5 135s 7 5 -5 135s 8 15 -5 135s 9 -15 5 135s 10 -5 5 135s 11 5 5 135s 12 15 5 135s 13 -15 15 135s 14 -5 15 135s 15 5 15 135s 16 15 15 135s > 135s > # first disable default Gaussian quadrature used for block integration, by 135s > # setting nblockdiscr explicitly: 135s > krige(zinc ~ 1, meuse, new.locs, model = vgm(1.34e5, "Sph", 800, nug = 2.42e4), 135s + block = c(40,40), nmax = 40, set = list(nblockdiscr=4)) 135s [using ordinary kriging] 135s coordinates var1.pred var1.var 135s 1 (181170, 333250) 268.7324 19568.76 135s > # now pass the same block discretization as block.irreg: 135s > krige(zinc ~ 1, meuse, new.locs, vgm(1.34e5, "Sph", 800, nug = 2.42e4), 135s + block = block.irreg, nmax = 40) 135s [using ordinary kriging] 135s coordinates var1.pred var1.var 135s 1 (181170, 333250) 268.7324 19568.76 135s > # check weights argument: 135s > block.irreg <- data.frame(expand.grid(x = disc, y = disc), weights = rep(1/16, 16)) 135s > krige(zinc ~ 1, meuse, new.locs, vgm(1.34e5, "Sph", 800, nug = 2.42e4), 135s + block = block.irreg, nmax = 40) 135s [using ordinary kriging] 135s coordinates var1.pred var1.var 135s 1 (181170, 333250) 268.7324 19568.76 135s > 135s BEGIN TEST covtable.R 135s 135s R version 4.4.1 (2024-06-14) -- "Race for Your Life" 135s Copyright (C) 2024 The R Foundation for Statistical Computing 135s Platform: powerpc64le-unknown-linux-gnu 135s 135s R is free software and comes with ABSOLUTELY NO WARRANTY. 135s You are welcome to redistribute it under certain conditions. 135s Type 'license()' or 'licence()' for distribution details. 135s 135s R is a collaborative project with many contributors. 135s Type 'contributors()' for more information and 135s 'citation()' on how to cite R or R packages in publications. 135s 135s Type 'demo()' for some demos, 'help()' for on-line help, or 135s 'help.start()' for an HTML browser interface to help. 135s Type 'q()' to quit R. 135s 135s > library(gstat) 136s > d=expand.grid(x=c(-.5,.5), y=c(-.5,.5)) 136s > d$z=1:4 136s > vv=vgm(model = "Tab", covtable = 136s + variogramLine(vgm(1, "Sph", 1), 1, n=1e4,min = 0, covariance = TRUE)) 136s > vv 136s model psill maxdist 136s 1 Tab NA 1 136s covariance table: 136s [1] 1.0000000 0.7039712 0.4319496 0.2080384 0.0560108 0.0000000 136s > krige(z~1,~x+y,d,data.frame(x=0,y=0),vgm(1, "Sph", 1)) 136s [using ordinary kriging] 136s x y var1.pred var1.var 136s 1 0 0 2.5 1.017767 136s > krige(z~1,~x+y,d,data.frame(x=0,y=0),vv) 136s [using ordinary kriging] 136s x y var1.pred var1.var 136s 1 0 0 2.5 1.017863 136s > krige(z~1,~x+y,d[1:2,],data.frame(x=0,y=0),vgm(1, "Sph", 1)) 136s [using ordinary kriging] 136s x y var1.pred var1.var 136s 1 0 0 1.5 1.267767 136s > krige(z~1,~x+y,d[1:2,],data.frame(x=0,y=0),vv) 136s [using ordinary kriging] 136s x y var1.pred var1.var 136s 1 0 0 1.5 1.267863 136s > 136s BEGIN TEST cv.R 136s 136s R version 4.4.1 (2024-06-14) -- "Race for Your Life" 136s Copyright (C) 2024 The R Foundation for Statistical Computing 136s Platform: powerpc64le-unknown-linux-gnu 136s 136s R is free software and comes with ABSOLUTELY NO WARRANTY. 136s You are welcome to redistribute it under certain conditions. 136s Type 'license()' or 'licence()' for distribution details. 136s 136s R is a collaborative project with many contributors. 136s Type 'contributors()' for more information and 136s 'citation()' on how to cite R or R packages in publications. 136s 136s Type 'demo()' for some demos, 'help()' for on-line help, or 136s 'help.start()' for an HTML browser interface to help. 136s Type 'q()' to quit R. 136s 136s > # try bivariate cokriging; cross validate first variable 136s > library(sp) 136s > data(meuse) 136s > library(gstat) 137s > g=gstat(NULL, "log-zinc", log(zinc)~1, ~x+y, meuse, nmax=10) 137s > g=gstat(g, "log-lead", log(lead)~1, ~x+y, meuse, nmax=10) 137s > g=gstat(g, "log-copper", log(copper)~1, ~x+y, meuse, nmax=10) 137s > v=variogram(g) 137s > g=gstat(g, model=vgm(1, "Sph", 1000), fill.all=T) 137s > g=fit.lmc(v, g) 137s > g 137s data: 137s log-zinc : formula = log(zinc)`~`1 ; data dim = 155 x 12 nmax = 10 137s log-lead : formula = log(lead)`~`1 ; data dim = 155 x 12 nmax = 10 137s log-copper : formula = log(copper)`~`1 ; data dim = 155 x 12 nmax = 10 137s variograms: 137s model psill range 137s log-zinc Sph 0.7132435 1000 137s log-lead Sph 0.6133020 1000 137s log-copper Sph 0.3634211 1000 137s log-zinc.log-lead Sph 0.6367012 1000 137s log-zinc.log-copper Sph 0.4570044 1000 137s log-lead.log-copper Sph 0.3934910 1000 137s ~x + y 137s > set.seed(13131) 137s > summary(gstat.cv(g, remove.all=TRUE, nfold=5)) 137s Intrinsic Correlation found. Good. 137s [using ordinary cokriging] 137s Intrinsic Correlation found. Good. 137s [using ordinary cokriging] 137s Intrinsic Correlation found. Good. 137s [using ordinary cokriging] 137s Intrinsic Correlation found. Good. 137s [using ordinary cokriging] 137s Intrinsic Correlation found. Good. 137s [using ordinary cokriging] 138s log.zinc.pred log.zinc.var observed residual 138s Min. :4.779 Min. :0.05426 Min. :4.727 Min. :-1.317697 138s 1st Qu.:5.396 1st Qu.:0.10872 1st Qu.:5.288 1st Qu.:-0.230224 138s Median :5.858 Median :0.13745 Median :5.787 Median :-0.034374 138s Mean :5.895 Mean :0.15249 Mean :5.886 Mean :-0.009094 138s 3rd Qu.:6.367 3rd Qu.:0.18303 3rd Qu.:6.514 3rd Qu.: 0.244075 138s Max. :7.358 Max. :0.60571 Max. :7.517 Max. : 1.414147 138s zscore fold x y 138s Min. :-3.35764 Min. :1.000 Min. :178605 Min. :329714 138s 1st Qu.:-0.58683 1st Qu.:2.000 1st Qu.:179371 1st Qu.:330762 138s Median :-0.10755 Median :3.000 Median :179991 Median :331633 138s Mean :-0.02766 Mean :2.852 Mean :180005 Mean :331635 138s 3rd Qu.: 0.70691 3rd Qu.:4.000 3rd Qu.:180630 3rd Qu.:332463 138s Max. : 3.43370 Max. :5.000 Max. :181390 Max. :333611 138s > summary(gstat.cv(g, remove.all=FALSE, nfold=5)) 138s Intrinsic Correlation found. Good. 138s [using ordinary cokriging] 138s Warning message: 138s In checkNames(value) : 138s attempt to set invalid names: this may lead to problems later on. See ?make.names 138s Intrinsic Correlation found. Good. 138s [using ordinary cokriging] 138s Intrinsic Correlation found. Good. 138s [using ordinary cokriging] 138s Intrinsic Correlation found. Good. 138s [using ordinary cokriging] 138s Intrinsic Correlation found. Good. 138s [using ordinary cokriging] 138s log.zinc.pred log.zinc.var observed residual 138s Min. :4.644 Min. :0.002371 Min. :4.727 Min. :-0.4190977 138s 1st Qu.:5.308 1st Qu.:0.004975 1st Qu.:5.288 1st Qu.:-0.0773273 138s Median :5.777 Median :0.005875 Median :5.787 Median : 0.0006165 138s Mean :5.883 Mean :0.006609 Mean :5.886 Mean : 0.0026164 138s 3rd Qu.:6.422 3rd Qu.:0.007419 3rd Qu.:6.514 3rd Qu.: 0.0825770 138s Max. :7.676 Max. :0.027247 Max. :7.517 Max. : 0.4659503 138s zscore fold x y 138s Min. :-4.793253 Min. :1.000 Min. :178605 Min. :329714 138s 1st Qu.:-1.080725 1st Qu.:2.000 1st Qu.:179371 1st Qu.:330762 138s Median : 0.007242 Median :3.000 Median :179991 Median :331633 138s Mean : 0.050487 Mean :2.974 Mean :180005 Mean :331635 138s 3rd Qu.: 1.117469 3rd Qu.:4.000 3rd Qu.:180630 3rd Qu.:332463 138s Max. : 6.475831 Max. :5.000 Max. :181390 Max. :333611 138s > 138s Warning message: 138s In checkNames(value) : 138s attempt to set invalid names: this may lead to problems later on. See ?make.names 138s BEGIN TEST cv3d.R 138s 138s R version 4.4.1 (2024-06-14) -- "Race for Your Life" 138s Copyright (C) 2024 The R Foundation for Statistical Computing 138s Platform: powerpc64le-unknown-linux-gnu 138s 138s R is free software and comes with ABSOLUTELY NO WARRANTY. 138s You are welcome to redistribute it under certain conditions. 138s Type 'license()' or 'licence()' for distribution details. 138s 138s R is a collaborative project with many contributors. 138s Type 'contributors()' for more information and 138s 'citation()' on how to cite R or R packages in publications. 138s 138s Type 'demo()' for some demos, 'help()' for on-line help, or 138s 'help.start()' for an HTML browser interface to help. 138s Type 'q()' to quit R. 138s 138s > options(digits = 4) 138s > set.seed(1131) 138s > d = data.frame(x=runif(50),y=runif(50),z=runif(50),v=rnorm(50)) 138s > library(gstat) 138s > xx = krige.cv(v~1,~x+y+z,d,model=vgm(1,"Exp",1), verbose=F, set=list(debug=0)) 139s > summary(xx) 139s var1.pred var1.var observed residual 139s Min. :-1.163 Min. :0.116 Min. :-2.240 Min. :-2.1755 139s 1st Qu.:-0.571 1st Qu.:0.175 1st Qu.:-0.876 1st Qu.:-0.7881 139s Median :-0.201 Median :0.192 Median :-0.219 Median : 0.1175 139s Mean :-0.165 Mean :0.208 Mean :-0.142 Mean : 0.0233 139s 3rd Qu.: 0.161 3rd Qu.:0.240 3rd Qu.: 0.500 3rd Qu.: 0.8508 139s Max. : 1.085 Max. :0.426 Max. : 1.857 Max. : 2.5224 139s zscore fold x y 139s Min. :-5.168 Min. : 1.0 Min. :0.0068 Min. :0.0034 139s 1st Qu.:-1.875 1st Qu.:13.2 1st Qu.:0.2397 1st Qu.:0.2466 139s Median : 0.245 Median :25.5 Median :0.4867 Median :0.4525 139s Mean : 0.017 Mean :25.5 Mean :0.4997 Mean :0.4969 139s 3rd Qu.: 2.020 3rd Qu.:37.8 3rd Qu.:0.7473 3rd Qu.:0.7394 139s Max. : 7.354 Max. :50.0 Max. :0.9875 Max. :0.9872 139s z 139s Min. :0.0016 139s 1st Qu.:0.1865 139s Median :0.4485 139s Mean :0.4714 139s 3rd Qu.:0.7240 139s Max. :0.9942 139s > 139s BEGIN TEST fit.R 139s 139s R version 4.4.1 (2024-06-14) -- "Race for Your Life" 139s Copyright (C) 2024 The R Foundation for Statistical Computing 139s Platform: powerpc64le-unknown-linux-gnu 139s 139s R is free software and comes with ABSOLUTELY NO WARRANTY. 139s You are welcome to redistribute it under certain conditions. 139s Type 'license()' or 'licence()' for distribution details. 139s 139s R is a collaborative project with many contributors. 139s Type 'contributors()' for more information and 139s 'citation()' on how to cite R or R packages in publications. 139s 139s Type 'demo()' for some demos, 'help()' for on-line help, or 139s 'help.start()' for an HTML browser interface to help. 139s Type 'q()' to quit R. 139s 139s > library(sp) 139s > data(meuse) 139s > library(gstat) 140s > v=variogram(log(zinc)~1,~x+y,meuse,cutoff=500,wi=100) 140s > v$gamma=c(0.5,1,2,3,3) 140s > fit.variogram(v, vgm(1, "Sph", 300, 0),warn.if.neg=TRUE) 140s Warning message: 140s In fit.variogram(v, vgm(1, "Sph", 300, 0), warn.if.neg = TRUE) : 140s partial sill or nugget fixed at zero value 140s model psill range 140s 1 Nug 0.000000 0.00 140s 2 Sph 7.878195 1567.77 140s > fit.variogram(v, vgm(1, "Sph", 300, 0),warn.if.neg=FALSE) 140s model psill range 140s 1 Nug 0.000000 0.00 140s 2 Sph 7.878195 1567.77 140s > 140s BEGIN TEST krige0.R 140s 140s R version 4.4.1 (2024-06-14) -- "Race for Your Life" 140s Copyright (C) 2024 The R Foundation for Statistical Computing 140s Platform: powerpc64le-unknown-linux-gnu 140s 140s R is free software and comes with ABSOLUTELY NO WARRANTY. 140s You are welcome to redistribute it under certain conditions. 140s Type 'license()' or 'licence()' for distribution details. 140s 140s R is a collaborative project with many contributors. 140s Type 'contributors()' for more information and 140s 'citation()' on how to cite R or R packages in publications. 140s 140s Type 'demo()' for some demos, 'help()' for on-line help, or 140s 'help.start()' for an HTML browser interface to help. 140s Type 'q()' to quit R. 140s 140s > # test -- load data: 140s > library(sp) 141s > data(meuse) 141s > coordinates(meuse) = ~x+y 141s > data(meuse.grid) 141s > gridded(meuse.grid) = ~x+y 141s > 141s > library(gstat) 141s > # test -- idw 141s > meuse.grid$idw <- idw0(zinc~1, meuse, meuse.grid)[,1] 141s > x <- idw(zinc~1, meuse, meuse.grid) 142s [inverse distance weighted interpolation] 142s > all.equal(x$var1.pred, meuse.grid$idw) 142s [1] TRUE 142s > spplot(meuse.grid["idw"],col.regions=bpy.colors()) 142s > v = vgm(1, "Exp", 500) 142s > # test sk: 142s > x0 <- krige0(zinc~1, meuse, meuse.grid, v, beta = 500, computeVar = TRUE) 142s > rownames(x0$pred)=NULL 142s > x <- krige(zinc~1, meuse, meuse.grid, v, beta = 500) 142s [using simple kriging] 142s > all.equal(x$var1.pred, x0$pred[,1]) 142s [1] TRUE 142s > all.equal(x$var1.var, x0$var) 142s [1] TRUE 142s > # test ok: 142s > x0 <- krige0(zinc~1, meuse, meuse.grid, v, computeVar = TRUE) 142s > rownames(x0$pred)=NULL 142s > names(x0$var)=NULL 142s > x <- krige(zinc~1, meuse, meuse.grid, v) 142s [using ordinary kriging] 142s > all.equal(x$var1.pred, x0$pred[,1]) 142s [1] TRUE 142s > all.equal(x$var1.var, x0$var) 142s [1] TRUE 142s > # test uk: 142s > x0 <- krige0(zinc~sqrt(dist), meuse, meuse.grid, v, computeVar = TRUE) 143s > rownames(x0$pred)=NULL 143s > names(x0$var)=NULL 143s > x <- krige(zinc~sqrt(dist), meuse, meuse.grid, v) 143s [using universal kriging] 143s > all.equal(x$var1.pred, x0$pred[,1]) 143s [1] TRUE 143s > all.equal(x$var1.var, x0$var) 143s [1] TRUE 143s > 143s BEGIN TEST line.R 143s 143s R version 4.4.1 (2024-06-14) -- "Race for Your Life" 143s Copyright (C) 2024 The R Foundation for Statistical Computing 143s Platform: powerpc64le-unknown-linux-gnu 143s 143s R is free software and comes with ABSOLUTELY NO WARRANTY. 143s You are welcome to redistribute it under certain conditions. 143s Type 'license()' or 'licence()' for distribution details. 143s 143s R is a collaborative project with many contributors. 143s Type 'contributors()' for more information and 143s 'citation()' on how to cite R or R packages in publications. 143s 143s Type 'demo()' for some demos, 'help()' for on-line help, or 143s 'help.start()' for an HTML browser interface to help. 143s Type 'q()' to quit R. 143s 143s > options(digits=5) 143s > library(sp) 143s > data(meuse.grid) 143s > gridded(meuse.grid) = ~x+y 143s > data(meuse) 143s > coordinates(meuse) = ~x+y 143s > 143s > # choose arbitrary line over the grid: 143s > image(meuse.grid["dist"],axes=T) 144s > pp = rbind(c(180000,331000),c(180000,332000),c(181000,333500)) 144s > Sl = SpatialLines(list(Lines(list(Line(pp)), "a"))) 144s > plot(Sl,add=T,col='green') 144s > 144s > # use the default spsample arguments of predict.gstat: 144s > pts=spsample(Sl,n=500,'regular',offset=c(.5,.5)) 144s > plot(pts, pch=3, cex=.2, add=T) 144s > 144s > library(gstat) 144s > v = vgm(.6, "Sph", 900, .06) 144s > out1 = krige(log(zinc)~1, meuse, Sl, v) 144s [using ordinary kriging] 144s > out1 144s An object of class "SpatialLinesDataFrame" 144s Slot "data": 144s x y var1.pred var1.var 144s a 180333 332167 6.1618 0.008025 144s 144s Slot "lines": 144s [[1]] 144s An object of class "Lines" 144s Slot "Lines": 144s [[1]] 144s An object of class "Line" 144s Slot "coords": 144s [,1] [,2] 144s [1,] 180000 331000 144s [2,] 180000 332000 144s [3,] 181000 333500 144s 144s 144s 144s Slot "ID": 144s [1] "a" 144s 144s 144s 144s Slot "bbox": 144s min max 144s x 180000 181000 144s y 331000 333500 144s 144s Slot "proj4string": 144s Coordinate Reference System: 144s Deprecated Proj.4 representation: NA 144s 144s > 144s > points(180333,332167,pch=3,cex=2) 144s > 144s > # use the same line as block discretization, and predict for (0,0) 144s > # (because the block discretizing points are not centered) 144s > out2 = krige(log(zinc)~1, meuse, SpatialPoints(matrix(0,1,2)), v, block=coordinates(pts)) 144s [using ordinary kriging] 144s > out2 144s coordinates var1.pred var1.var 144s 1 (0, 0) 6.1618 0.008025 144s > 144s > compare.krigingLines = function(formula, data, newdata, model) { 144s + out1 = krige(formula, data, newdata, model) 144s + pts = spsample(newdata, n=500, 'regular', offset=.5) 144s + out2 = krige(formula, data, SpatialPoints(matrix(0,1,2)), model, block = coordinates(pts)) 144s + print("difference:") 144s + as.data.frame(out1)[3:4]- as.data.frame(out2)[3:4] 144s + } 144s > 144s > compare.krigingLines(log(zinc)~1, meuse, Sl, v) 144s [using ordinary kriging] 144s [using ordinary kriging] 144s [1] "difference:" 144s var1.pred var1.var 144s a 0 0 144s > 144s > # one line, consisting of two line segments: 144s > pp2 = rbind(c(181000,333500),c(181000,332500)) 144s > Sl2 = SpatialLines(list(Lines(list(Line(pp),Line(pp2)), "a"))) 144s > krige(log(zinc)~1, meuse, Sl2, v) 144s [using ordinary kriging] 144s An object of class "SpatialLinesDataFrame" 144s Slot "data": 144s x y var1.pred var1.var 144s a 180667 332583 6.0424 0.0053191 144s 144s Slot "lines": 144s [[1]] 144s An object of class "Lines" 144s Slot "Lines": 144s [[1]] 144s An object of class "Line" 144s Slot "coords": 144s [,1] [,2] 144s [1,] 180000 331000 144s [2,] 180000 332000 144s [3,] 181000 333500 144s 144s 144s [[2]] 144s An object of class "Line" 144s Slot "coords": 144s [,1] [,2] 144s [1,] 181000 333500 144s [2,] 181000 332500 144s 144s 144s 144s Slot "ID": 144s [1] "a" 144s 144s 144s 144s Slot "bbox": 144s min max 144s x 180000 181000 144s y 331000 333500 144s 144s Slot "proj4string": 144s Coordinate Reference System: 144s Deprecated Proj.4 representation: NA 144s 144s > compare.krigingLines(log(zinc)~1, meuse, Sl2, v) 144s [using ordinary kriging] 144s [using ordinary kriging] 144s [1] "difference:" 144s var1.pred var1.var 144s a 0 0 144s > 144s > # two seperate line segments: 144s > Sl3 = SpatialLines(list(Lines(list(Line(pp)), "a"),Lines(list(Line(pp2)),"b"))) 144s > krige(log(zinc)~1, meuse, Sl3, v) 144s [using ordinary kriging] 144s An object of class "SpatialLinesDataFrame" 144s Slot "data": 144s x y var1.pred var1.var 144s a 180333 332167 6.1618 0.008025 144s b 181000 333000 5.7060 0.011043 144s 144s Slot "lines": 144s [[1]] 144s An object of class "Lines" 144s Slot "Lines": 144s [[1]] 144s An object of class "Line" 144s Slot "coords": 144s [,1] [,2] 144s [1,] 180000 331000 144s [2,] 180000 332000 144s [3,] 181000 333500 144s 144s 144s 144s Slot "ID": 144s [1] "a" 144s 144s 144s [[2]] 144s An object of class "Lines" 144s Slot "Lines": 144s [[1]] 144s An object of class "Line" 144s Slot "coords": 144s [,1] [,2] 144s [1,] 181000 333500 144s [2,] 181000 332500 144s 144s 144s 144s Slot "ID": 144s [1] "b" 144s 144s 144s 144s Slot "bbox": 144s min max 144s x 180000 181000 144s y 331000 333500 144s 144s Slot "proj4string": 144s Coordinate Reference System: 144s Deprecated Proj.4 representation: NA 144s 144s > 144s BEGIN TEST merge.R 144s 144s R version 4.4.1 (2024-06-14) -- "Race for Your Life" 144s Copyright (C) 2024 The R Foundation for Statistical Computing 144s Platform: powerpc64le-unknown-linux-gnu 144s 144s R is free software and comes with ABSOLUTELY NO WARRANTY. 144s You are welcome to redistribute it under certain conditions. 144s Type 'license()' or 'licence()' for distribution details. 144s 144s R is a collaborative project with many contributors. 144s Type 'contributors()' for more information and 144s 'citation()' on how to cite R or R packages in publications. 144s 144s Type 'demo()' for some demos, 'help()' for on-line help, or 144s 'help.start()' for an HTML browser interface to help. 144s Type 'q()' to quit R. 144s 144s > options(digits=6) 144s > # illustrates the use of merge, for merging parameters accross variables: 144s > # Z1=m+e1(s) 144s > # Z2=m+e2(s) 144s > # Z1 and Z2 each have a different variogram, but share the parameter m 144s > # see documentation of gstat() function 144s > library(gstat) 145s > d1 = data.frame(x=c(0,2),y=c(0,0),z=c(0,1)) 145s > d2 = data.frame(x=c(0,2),y=c(2,2),z=c(4,5)) 145s > g = gstat(NULL,"d1", z~1,~x+y,d1,model=vgm(1, "Exp", 1)) 145s > g = gstat(g,"d2", z~1,~x+y,d2,model=vgm(1, "Exp", 1), merge=c("d1","d2")) 145s > g = gstat(g, c("d1", "d2"), model = vgm(0.5, "Exp", 1)) 145s > predict(g, data.frame(x=1,y=1), debug = 32) 145s Intrinsic Correlation found. Good. 145s [using ordinary cokriging] 145s we're at location X: 1 Y: 1 Z: 0 145s zero block size 145s we're at point X: 1 Y: 1 Z: 0 145s 145s # X: 145s #Matrix: 4 by 1 145s rbind( 145s c( 1.000000), # row 1 145s c( 1.000000), # row 2 145s c( 1.000000), # row 3 145s c( 1.000000) # row 4 145s ) 145s [using generalized covariances: max_val - semivariance()] 145s # Covariances (x_i, x_j) matrix C (upper triangle): 145s #Matrix: 4 by 4 145s rbind( 145s c( 1.000000, 0.135335, 0.067668, 0.029553), # row 1 145s c( 0.135335, 1.000000, 0.029553, 0.067668), # row 2 145s c( 0.067668, 0.029553, 1.000000, 0.135335), # row 3 145s c( 0.029553, 0.067668, 0.135335, 1.000000) # row 4 145s ) 145s 145s # glm->C, Choleski decomposed:: 145s #Matrix: 4 by 4 145s rbind( 145s c( 1.000000, 0.135335, 0.067668, 0.029553), # row 1 145s c( 0.000000, 0.990800, 0.020584, 0.064259), # row 2 145s c( 0.000000, 0.000000, 0.997496, 0.132344), # row 3 145s c( 0.000000, 0.000000, 0.000000, 0.988677) # row 4 145s ) 145s 145s # X'C-1 X: 145s #Matrix: 1 by 1 145s rbind( 145s c( 3.245289) # row 1 145s ) 145s 145s # beta: 145s #Vector: dim: 1 145s c( 2.500000) 145s # Cov(beta), (X'C-1 X)-1: 145s #Matrix: 1 by 1 145s rbind( 145s c( 0.308139) # row 1 145s ) 145s 145s # Corr(beta): 145s #Matrix: 1 by 1 145s rbind( 145s c( 1.000000) # row 1 145s ) 145s 145s # X0 (X values at prediction location x0): 145s #Matrix: 1 by 2 145s rbind( 145s c( 1.000000, 1.000000) # row 1 145s ) 145s 145s # BLUE(mu), E(y(x0)) = X0'beta: 145s #Vector: dim: 2 145s c( 2.500000, 2.500000) 145s # Covariances (x_i, x_0), C0: 145s #Matrix: 4 by 2 145s rbind( 145s c( 0.243117, 0.121558), # row 1 145s c( 0.243117, 0.121558), # row 2 145s c( 0.121558, 0.243117), # row 3 145s c( 0.121558, 0.243117) # row 4 145s ) 145s 145s # C-1 C0: 145s #Matrix: 4 by 2 145s rbind( 145s c( 0.206482, 0.089387), # row 1 145s c( 0.206482, 0.089387), # row 2 145s c( 0.089387, 0.206482), # row 3 145s c( 0.089387, 0.206482) # row 4 145s ) 145s 145s # [a] Cov_ij(B,B) or Cov_ij(0,0): 145s #Matrix: 2 by 2 145s rbind( 145s c( 1.000000, 0.500000), # row 1 145s c( 0.500000, 1.000000) # row 2 145s ) 145s 145s # [c] (x0-X'C-1 c0)'(X'C-1 X)-1(x0-X'C-1 c0): 145s #Matrix: 2 by 2 145s rbind( 145s c( 0.051360, 0.051360), # row 1 145s c( 0.051360, 0.051360) # row 2 145s ) 145s 145s # [b] c0'C-1 c0: 145s #Matrix: 2 by 2 145s rbind( 145s c( 0.122130, 0.093662), # row 1 145s c( 0.093662, 0.122130) # row 2 145s ) 145s 145s # Best Linear Unbiased Predictor: 145s #Vector: dim: 2 145s c( 2.031619, 2.968381) 145s # MSPE ([a]-[b]+[c]): 145s #Matrix: 2 by 2 145s rbind( 145s c( 0.929230, 0.457698), # row 1 145s c( 0.457698, 0.929230) # row 2 145s ) 145s 145s # kriging weights: 145s #Matrix: 4 by 2 145s rbind( 145s c( 0.308548, 0.191452), # row 1 145s c( 0.308548, 0.191452), # row 2 145s c( 0.191452, 0.308548), # row 3 145s c( 0.191452, 0.308548) # row 4 145s ) 145s 145s 145s x y d1.pred d1.var d2.pred d2.var cov.d1.d2 145s 1 1 1 2.03162 0.92923 2.96838 0.92923 0.457698 145s > 145s > # Z1 and Z2 share a regression slope: 145s > g = gstat(NULL,"d1", z~x,~x+y,d1,model=vgm(1, "Exp", 1)) 145s > g = gstat(g,"d2", z~x,~x+y,d2,model=vgm(1, "Exp", 1), 145s + merge=list(c("d1",2,"d2",2))) 145s > g = gstat(g, c("d1", "d2"), model = vgm(0.5, "Exp", 1)) 145s > predict(g, data.frame(x=1,y=1), debug = 32) 145s Intrinsic Correlation found. Good. 145s [using universal cokriging] 145s we're at location X: 1 Y: 1 Z: 0 145s zero block size 145s we're at point X: 1 Y: 1 Z: 0 145s 145s # X: 145s #Matrix: 4 by 3 145s rbind( 145s c( 1.000000, 0.000000, 0.000000), # row 1 145s c( 1.000000, 2.000000, 0.000000), # row 2 145s c( 0.000000, 0.000000, 1.000000), # row 3 145s c( 0.000000, 2.000000, 1.000000) # row 4 145s ) 145s [using generalized covariances: max_val - semivariance()] 145s # Covariances (x_i, x_j) matrix C (upper triangle): 145s #Matrix: 4 by 4 145s rbind( 145s c( 1.000000, 0.135335, 0.067668, 0.029553), # row 1 145s c( 0.135335, 1.000000, 0.029553, 0.067668), # row 2 145s c( 0.067668, 0.029553, 1.000000, 0.135335), # row 3 145s c( 0.029553, 0.067668, 0.135335, 1.000000) # row 4 145s ) 145s 145s # glm->C, Choleski decomposed:: 145s #Matrix: 4 by 4 145s rbind( 145s c( 1.000000, 0.135335, 0.067668, 0.029553), # row 1 145s c( 0.000000, 0.990800, 0.020584, 0.064259), # row 2 145s c( 0.000000, 0.000000, 0.997496, 0.132344), # row 3 145s c( 0.000000, 0.000000, 0.000000, 0.988677) # row 4 145s ) 145s 145s # X'C-1 X: 145s #Matrix: 3 by 3 145s rbind( 145s c( 1.774607, 1.622645, -0.151962), # row 1 145s c( 1.622645, 7.676050, 1.622645), # row 2 145s c(-0.151962, 1.622645, 1.774607) # row 3 145s ) 145s 145s # beta: 145s #Vector: dim: 3 145s c( 0.000000, 0.500000, 4.000000) 145s # Cov(beta), (X'C-1 X)-1: 145s #Matrix: 3 by 3 145s rbind( 145s c( 0.793363, -0.225695, 0.274305), # row 1 145s c(-0.225695, 0.225695, -0.225695), # row 2 145s c( 0.274305, -0.225695, 0.793363) # row 3 145s ) 145s 145s # Corr(beta): 145s #Matrix: 3 by 3 145s rbind( 145s c( 1.000000, -0.533366, 0.345750), # row 1 145s c(-0.533366, 1.000000, -0.533366), # row 2 145s c( 0.345750, -0.533366, 1.000000) # row 3 145s ) 145s 145s # X0 (X values at prediction location x0): 145s #Matrix: 3 by 2 145s rbind( 145s c( 1.000000, 0.000000), # row 1 145s c( 1.000000, 1.000000), # row 2 145s c( 0.000000, 1.000000) # row 3 145s ) 145s 145s # BLUE(mu), E(y(x0)) = X0'beta: 145s #Vector: dim: 2 145s c( 0.500000, 4.500000) 145s # Covariances (x_i, x_0), C0: 145s #Matrix: 4 by 2 145s rbind( 145s c( 0.243117, 0.121558), # row 1 145s c( 0.243117, 0.121558), # row 2 145s c( 0.121558, 0.243117), # row 3 145s c( 0.121558, 0.243117) # row 4 145s ) 145s 145s # C-1 C0: 145s #Matrix: 4 by 2 145s rbind( 145s c( 0.206482, 0.089387), # row 1 145s c( 0.206482, 0.089387), # row 2 145s c( 0.089387, 0.206482), # row 3 145s c( 0.089387, 0.206482) # row 4 145s ) 145s 145s # [a] Cov_ij(B,B) or Cov_ij(0,0): 145s #Matrix: 2 by 2 145s rbind( 145s c( 1.000000, 0.500000), # row 1 145s c( 0.500000, 1.000000) # row 2 145s ) 145s 145s # [c] (x0-X'C-1 c0)'(X'C-1 X)-1(x0-X'C-1 c0): 145s #Matrix: 2 by 2 145s rbind( 145s c( 0.203564, -0.100844), # row 1 145s c(-0.100844, 0.203564) # row 2 145s ) 145s 145s # [b] c0'C-1 c0: 145s #Matrix: 2 by 2 145s rbind( 146s c( 0.122130, 0.093662), # row 1 146s c( 0.093662, 0.122130) # row 2 146s ) 146s 146s # Best Linear Unbiased Predictor: 146s #Vector: dim: 2 146s c( 0.500000, 4.500000) 146s # MSPE ([a]-[b]+[c]): 146s #Matrix: 2 by 2 146s rbind( 146s c( 1.081434, 0.305494), # row 1 146s c( 0.305494, 1.081434) # row 2 146s ) 146s 146s # kriging weights: 146s #Matrix: 4 by 2 146s rbind( 146s c( 0.500000, 0.000000), # row 1 146s c( 0.500000, 0.000000), # row 2 146s c( 0.000000, 0.500000), # row 3 146s c( 0.000000, 0.500000) # row 4 146s ) 146s 146s 146s x y d1.pred d1.var d2.pred d2.var cov.d1.d2 146s 1 1 1 0.5 1.08143 4.5 1.08143 0.305494 146s > 146s BEGIN TEST na.action.R 146s 146s R version 4.4.1 (2024-06-14) -- "Race for Your Life" 146s Copyright (C) 2024 The R Foundation for Statistical Computing 146s Platform: powerpc64le-unknown-linux-gnu 146s 146s R is free software and comes with ABSOLUTELY NO WARRANTY. 146s You are welcome to redistribute it under certain conditions. 146s Type 'license()' or 'licence()' for distribution details. 146s 146s R is a collaborative project with many contributors. 146s Type 'contributors()' for more information and 146s 'citation()' on how to cite R or R packages in publications. 146s 146s Type 'demo()' for some demos, 'help()' for on-line help, or 146s 'help.start()' for an HTML browser interface to help. 146s Type 'q()' to quit R. 146s 146s > library(sp) 146s > 146s > data(meuse) 146s > data(meuse.grid) 146s > 146s > set.seed(13131) # reproduce results 146s > 146s > # select 10 random rows; 146s > # create two missing values in the coordinates: 146s > m = meuse.grid[sample(nrow(meuse.grid), 10), ] 146s > m[c(2,8), "x"] = NA 146s > 146s > library(gstat) 146s > ## this is not allowed anymore: 146s > try(krige(log(zinc)~1,~x+y,meuse,m, na.action = na.pass)) 146s > try(krige(log(zinc)~1,~x+y,meuse,m, na.action = na.omit)) 146s Error in na.fail.default(structure(list(x = c(179220, NA, 178740, 179300, : 146s missing values in object 146s > try(krige(log(zinc)~1,~x+y,meuse,m, na.action = na.exclude)) 146s Error in na.fail.default(structure(list(x = c(179220, NA, 178740, 179300, : 146s missing values in object 146s > try(krige(log(zinc)~1,~x+y,meuse,m, na.action = na.fail)) 146s Error in na.fail.default(structure(list(x = c(179220, NA, 178740, 179300, : 146s missing values in object 146s > 146s > # select 10 random rows; 146s > # create two missing values in the regressor variable: 146s > m = meuse.grid[sample(nrow(meuse.grid), 10), ] 146s > m[c(3,7), "dist"] = NA 146s Error in na.fail.default(structure(list(x = c(179220, NA, 178740, 179300, : 146s missing values in object 146s > krige(log(zinc)~dist,~x+y,meuse,m, na.action = na.pass) 147s [ordinary or weighted least squares prediction] 147s x y var1.pred var1.var 147s 1 178860 330860 6.530134 0.2415196 147s 2 180260 331860 5.389567 0.2406041 147s 3 180100 331860 NA NA 147s 4 180460 331820 5.213370 0.2417197 147s 5 179660 330580 5.550859 0.2398778 147s 6 179740 330300 6.108648 0.2395392 147s 7 180220 330660 NA NA 147s 8 178580 329820 6.533801 0.2415453 147s 9 180100 331900 5.580264 0.2397758 147s 10 180780 331900 5.095967 0.2426499 147s > krige(log(zinc)~dist,~x+y,meuse,m, na.action = na.omit) 147s [ordinary or weighted least squares prediction] 147s x y var1.pred var1.var 147s 1877 178860 330860 6.530134 0.2415196 147s 1015 180260 331860 5.389567 0.2406041 147s 1056 180460 331820 5.213370 0.2417197 147s 2199 179660 330580 5.550859 0.2398778 147s 2556 179740 330300 6.108648 0.2395392 147s 2985 178580 329820 6.533801 0.2415453 147s 975 180100 331900 5.580264 0.2397758 147s 992 180780 331900 5.095967 0.2426499 147s > krige(log(zinc)~dist,~x+y,meuse,m, na.action = na.exclude) 147s [ordinary or weighted least squares prediction] 147s x y var1.pred var1.var 147s 1877 178860 330860 6.530134 0.2415196 147s 1015 180260 331860 5.389567 0.2406041 147s 1056 180460 331820 5.213370 0.2417197 147s 2199 179660 330580 5.550859 0.2398778 147s 2556 179740 330300 6.108648 0.2395392Error in na.fail.default(structure(list(dist = c(0.00135803, 0.423804, : 147s missing values in object 147s 147s 2985 178580 329820 6.533801 0.2415453 147s 975 180100 331900 5.580264 0.2397758 147s 992 180780 331900 5.095967 0.2426499 147s > try(krige(log(zinc)~dist,~x+y,meuse,m, na.action = na.fail)) 147s > 147s BEGIN TEST rings.R 147s 147s R version 4.4.1 (2024-06-14) -- "Race for Your Life" 147s Copyright (C) 2024 The R Foundation for Statistical Computing 147s Platform: powerpc64le-unknown-linux-gnu 147s 147s R is free software and comes with ABSOLUTELY NO WARRANTY. 147s You are welcome to redistribute it under certain conditions. 147s Type 'license()' or 'licence()' for distribution details. 147s 147s R is a collaborative project with many contributors. 147s Type 'contributors()' for more information and 147s 'citation()' on how to cite R or R packages in publications. 147s 147s Type 'demo()' for some demos, 'help()' for on-line help, or 147s 'help.start()' for an HTML browser interface to help. 147s Type 'q()' to quit R. 147s 147s > library(sp) 147s > library(gstat) 148s > set.seed(13331) 148s > 148s > x = runif(10) 148s > y = runif(10) 148s > z = rnorm(10) 148s > d = data.frame(x=x,y=y,z=z) 148s > bl = c(1,1) 148s > 148s > nd = data.frame(x=.5, y=.5) 148s > 148s > # single block: 148s > library(sp) 148s > coordinates(d) = ~x+y 148s > nd = SpatialPoints(nd) 148s > xx = krige(z~1, d, nd, model=vgm(1, "Exp", 1), block = bl, 148s + set = list(nb=4)) 148s [using ordinary kriging] 148s > 148s > ring = cbind(c(0,bl[1],bl[1],0,0), c(0,0,bl[2],bl[2],0)) 148s > r1 = SpatialPolygons(list(Polygons(list(Polygon(ring)), ID = "xx"))) 148s > a = data.frame(a = 1, b = 2) 148s > rownames(a) = "xx" 148s > r1df = SpatialPolygonsDataFrame(r1, a) 148s > 148s > g = gstat(formula=z~1, data=d, model=vgm(1, "Exp", 1)) 148s > args = list(type = "regular", n=16, offset=c(0.5,0.5)) 148s > yy = predict(g, r1df, block = bl, sps.args = args) 148s [using ordinary kriging] 148s > 148s > xx = as.data.frame(xx) 148s > yy = as.data.frame(yy) 148s > row.names(xx) = row.names(yy) 148s > print(all.equal(xx,yy)) 148s [1] TRUE 148s > 148s > ## multiple blocks of equal size: 148s > nd = data.frame(x= 0:4 + .5, y=rep(.5,5)) 148s > nd = SpatialPoints(nd) 148s > xx = krige(z~1, d, nd, model=vgm(1, "Exp", 1), block = bl, 148s + set = list(nb=4)) 148s [using ordinary kriging] 148s > ring0 = cbind(c(0,bl[1],bl[1],0,0), c(0,0,bl[2],bl[2],0)) 148s > ring1 = cbind(c(1+0,1+bl[1],1+bl[1],1+0,1+0), c(0,0,bl[2],bl[2],0)) 148s > ring2 = cbind(c(2+0,2+bl[1],2+bl[1],2+0,2+0), c(0,0,bl[2],bl[2],0)) 148s > ring3 = cbind(c(3+0,3+bl[1],3+bl[1],3+0,3+0), c(0,0,bl[2],bl[2],0)) 148s > ring4 = cbind(c(4+0,4+bl[1],4+bl[1],4+0,4+0), c(0,0,bl[2],bl[2],0)) 148s > r1 = SpatialPolygons(list( 148s + Polygons(list(Polygon(ring0)), ID = "x0"), 148s + Polygons(list(Polygon(ring1)), ID = "x1"), 148s + Polygons(list(Polygon(ring2)), ID = "x2"), 148s + Polygons(list(Polygon(ring3)), ID = "x3"), 148s + Polygons(list(Polygon(ring4)), ID = "x4") 148s + )) 148s > df = data.frame(a=rep(1,5), b= rep(1,5)) 148s > rownames(df) = c("x0", "x1", "x2", "x3", "x4") 148s > r1df = SpatialPolygonsDataFrame(r1, df) 148s > 148s > yy = predict(g, r1, block = bl, sps.args = args) 148s [using ordinary kriging] 148s > xx = as.data.frame(xx) 148s > yy = as.data.frame(yy) 148s > row.names(xx) = row.names(yy) 148s > all.equal(xx, yy) 148s [1] TRUE 148s > 148s > ## multiple blocks of equal size: 148s > args = list(type = "regular", cellsize=.25, offset=c(0.5,0.5), n=16) 148s > yy = predict(g, r1, block = bl, sps.args = args) 148s [using ordinary kriging] 148s > xx = as.data.frame(xx) 148s > yy = as.data.frame(yy) 148s > row.names(xx) = row.names(yy) 148s > print(all.equal(xx, yy)) 148s [1] TRUE 148s > 148s > ## multiple blocks of varying size: 148s > nd = data.frame(x=c(0.5, 2, 4.5), y=c(0.5, 1, 1.5)) 148s > nd = SpatialPoints(nd) 148s > bl = c(1,1) 148s > ring0 = cbind(c(0,bl[1],bl[1],0,0), c(0,0,bl[2],bl[2],0)) 148s > xx1 = krige(z~1, d, nd[1], model=vgm(1, "Exp", 1), block = bl, 148s + set = list(nb=4)) 148s [using ordinary kriging] 148s > bl = c(2,2) 148s > ring1 = cbind(c(1+0,1+bl[1],1+bl[1],1+0,1+0), c(0,0,bl[2],bl[2],0)) 148s > xx2 = krige(z~1, d, nd[2], model=vgm(1, "Exp", 1), block = bl, 148s + set = list(nb=4)) 148s [using ordinary kriging] 148s > bl = c(3,3) 148s > ring2 = cbind(c(3+0,3+bl[1],3+bl[1],3+0,3+0), c(0,0,bl[2],bl[2],0)) 148s > xx3 = krige(z~1, d, nd[3], model=vgm(1, "Exp", 1), block = bl, 148s + set = list(nb=4)) 148s [using ordinary kriging] 148s > r1 = SpatialPolygons(list( 148s + Polygons(list(Polygon(ring0)), ID = "x0"), 148s + Polygons(list(Polygon(ring1)), ID = "x1"), 148s + Polygons(list(Polygon(ring2)), ID = "x2") 148s + )) 148s > df = data.frame(a = rep(1,3), b = rep(1,3)) 148s > rownames(df) = c("x0", "x1", "x2") 148s > r1df = SpatialPolygonsDataFrame(r1, df) 148s > 148s > args = list(type = "regular", n=16, offset=c(0.5,0.5)) 148s > yy = predict(g, r1df, block = bl, sps.args = args) 148s [using ordinary kriging] 148s > xx = rbind(as.data.frame(xx1), as.data.frame(xx2), as.data.frame(xx3)) 148s > row.names(xx) = 1:3 148s > xx = as.data.frame(xx) 148s > yy = as.data.frame(yy) 148s > row.names(xx) = row.names(yy) 148s > print(all.equal(xx, yy)) 148s [1] TRUE 148s > 148s BEGIN TEST sim.R 148s 148s R version 4.4.1 (2024-06-14) -- "Race for Your Life" 148s Copyright (C) 2024 The R Foundation for Statistical Computing 148s Platform: powerpc64le-unknown-linux-gnu 148s 148s R is free software and comes with ABSOLUTELY NO WARRANTY. 148s You are welcome to redistribute it under certain conditions. 148s Type 'license()' or 'licence()' for distribution details. 148s 148s R is a collaborative project with many contributors. 148s Type 'contributors()' for more information and 148s 'citation()' on how to cite R or R packages in publications. 148s 148s Type 'demo()' for some demos, 'help()' for on-line help, or 148s 'help.start()' for an HTML browser interface to help. 148s Type 'q()' to quit R. 148s 148s > options(digits=6) 148s > library(sp) 148s > data(meuse) 148s > set.seed(158229572) 148s > new.locs <- data.frame(x = c(181170, 180310, 180205, 178673, 178770, 178270), 148s + y = c(333250, 332189, 331707, 330066, 330675, 331075)) 148s > library(gstat) 149s > krige(zinc ~ 1, ~ x + y, meuse, newdata = new.locs, 149s + model = vgm(1.34e5, "Sph", 800, nug = 2.42e4), 149s + block = c(40,40), nmax = 40, nsim = 10) 149s drawing 10 GLS realisations of beta... 149s [using conditional Gaussian simulation] 149s x y sim1 sim2 sim3 sim4 sim5 sim6 sim7 149s 1 181170 333250 267.385 27.5686 428.144 381.576 151.119 175.890 293.273 149s 2 180310 332189 429.437 659.6579 564.023 611.666 612.756 619.791 771.961 149s 3 180205 331707 205.978 412.7276 271.827 380.349 169.488 369.822 266.026 149s 4 178673 330066 117.479 684.0663 399.148 585.096 606.396 867.866 807.634 149s 5 178770 330675 780.072 837.4628 682.690 911.052 600.984 783.019 749.476 149s 6 178270 331075 1025.778 1582.0269 614.235 332.377 660.228 589.447 972.018 149s sim8 sim9 sim10 149s 1 294.107 113.347 279.991 149s 2 776.498 724.160 901.692 149s 3 338.021 630.244 140.272 149s 4 127.301 957.242 444.007 149s 5 533.773 748.144 623.960 149s 6 1084.170 537.604 -214.972 149s > 149s BEGIN TEST stars.R 149s 149s R version 4.4.1 (2024-06-14) -- "Race for Your Life" 149s Copyright (C) 2024 The R Foundation for Statistical Computing 149s Platform: powerpc64le-unknown-linux-gnu 149s 149s R is free software and comes with ABSOLUTELY NO WARRANTY. 149s You are welcome to redistribute it under certain conditions. 149s Type 'license()' or 'licence()' for distribution details. 149s 149s R is a collaborative project with many contributors. 149s Type 'contributors()' for more information and 149s 'citation()' on how to cite R or R packages in publications. 149s 149s Type 'demo()' for some demos, 'help()' for on-line help, or 149s 'help.start()' for an HTML browser interface to help. 149s Type 'q()' to quit R. 149s 149s > Sys.setenv(TZ = "UTC") 149s > 149s > # 0. using sp: 149s > 149s > suppressPackageStartupMessages(library(sp)) 150s > demo(meuse, ask = FALSE) 150s 150s 150s demo(meuse) 150s ---- ~~~~~ 150s 150s > require(sp) 150s 150s > crs = CRS("EPSG:28992") 150s 150s > data("meuse") 150s 150s > coordinates(meuse) <- ~x+y 150s 150s > proj4string(meuse) <- crs 150s 150s > data("meuse.grid") 150s 150s > coordinates(meuse.grid) <- ~x+y 150s 150s > gridded(meuse.grid) <- TRUE 150s 150s > proj4string(meuse.grid) <- crs 150s 150s > data("meuse.riv") 150s 150s > meuse.riv <- SpatialPolygons(list(Polygons(list(Polygon(meuse.riv)),"meuse.riv"))) 150s 150s > proj4string(meuse.riv) <- crs 150s 150s > data("meuse.area") 150s 150s > meuse.area = SpatialPolygons(list(Polygons(list(Polygon(meuse.area)), "area"))) 150s 150s > proj4string(meuse.area) <- crs 150s > suppressPackageStartupMessages(library(gstat)) 151s > v = variogram(log(zinc)~1, meuse) 151s > (v.fit = fit.variogram(v, vgm(1, "Sph", 900, 1))) 151s model psill range 151s 1 Nug 0.05066243 0.0000 151s 2 Sph 0.59060780 897.0209 151s > k_sp = krige(log(zinc)~1, meuse[-(1:5),], meuse[1:5,], v.fit) 151s [using ordinary kriging] 151s > k_sp_grd = krige(log(zinc)~1, meuse, meuse.grid, v.fit) 151s [using ordinary kriging] 151s > 151s > # 1. using sf: 151s > suppressPackageStartupMessages(library(sf)) 151s Warning message: 151s package ‘sf’ was built under R version 4.4.2 151s > demo(meuse_sf, ask = FALSE, echo = FALSE) 151s > # reloads meuse as data.frame, so 151s > demo(meuse, ask = FALSE) 151s 151s 151s demo(meuse) 151s ---- ~~~~~ 151s 151s > require(sp) 151s 151s > crs = CRS("EPSG:28992") 151s 151s > data("meuse") 151s 151s > coordinates(meuse) <- ~x+y 151s 151s > proj4string(meuse) <- crs 151s 151s > data("meuse.grid") 151s 151s > coordinates(meuse.grid) <- ~x+y 151s 151s > gridded(meuse.grid) <- TRUE 151s 151s > proj4string(meuse.grid) <- crs 151s 151s > data("meuse.riv") 151s 151s > meuse.riv <- SpatialPolygons(list(Polygons(list(Polygon(meuse.riv)),"meuse.riv"))) 151s 151s > proj4string(meuse.riv) <- crs 151s 151s > data("meuse.area") 151s 151s > meuse.area = SpatialPolygons(list(Polygons(list(Polygon(meuse.area)), "area"))) 151s 151s > proj4string(meuse.area) <- crs 151s > 151s > v = variogram(log(zinc)~1, meuse_sf) 151s > (v.fit = fit.variogram(v, vgm(1, "Sph", 900, 1))) 151s model psill range 151s 1 Nug 0.05066243 0.0000 151s 2 Sph 0.59060780 897.0209 151s > k_sf = krige(log(zinc)~1, meuse_sf[-(1:5),], meuse_sf[1:5,], v.fit) 151s [using ordinary kriging] 151s > 151s > all.equal(k_sp, as(k_sf, "Spatial"), check.attributes = FALSE) 151s [1] TRUE 151s > all.equal(k_sp, as(k_sf, "Spatial"), check.attributes = TRUE) 151s [1] "Attributes: < Component “bbox”: Attributes: < Component “dimnames”: Component 1: 2 string mismatches > >" 151s [2] "Attributes: < Component “coords”: Attributes: < Component “dimnames”: Component 2: 2 string mismatches > >" 151s [3] "Attributes: < Component “coords.nrs”: Numeric: lengths (2, 0) differ >" 151s > 151s > # 2. using stars for grid: 151s > 151s > suppressPackageStartupMessages(library(stars)) 151s > st = st_as_stars(meuse.grid) 151s > st_crs(st) 151s Coordinate Reference System: 151s User input: Amersfoort / RD New 151s wkt: 151s PROJCRS["Amersfoort / RD New", 151s BASEGEOGCRS["Amersfoort", 151s DATUM["Amersfoort", 151s ELLIPSOID["Bessel 1841",6377397.155,299.1528128, 151s LENGTHUNIT["metre",1]]], 151s PRIMEM["Greenwich",0, 151s ANGLEUNIT["degree",0.0174532925199433]], 151s ID["EPSG",4289]], 151s CONVERSION["RD New", 151s METHOD["Oblique Stereographic", 151s ID["EPSG",9809]], 151s PARAMETER["Latitude of natural origin",52.1561605555556, 151s ANGLEUNIT["degree",0.0174532925199433], 151s ID["EPSG",8801]], 151s PARAMETER["Longitude of natural origin",5.38763888888889, 151s ANGLEUNIT["degree",0.0174532925199433], 151s ID["EPSG",8802]], 151s PARAMETER["Scale factor at natural origin",0.9999079, 151s SCALEUNIT["unity",1], 151s ID["EPSG",8805]], 151s PARAMETER["False easting",155000, 151s LENGTHUNIT["metre",1], 151s ID["EPSG",8806]], 151s PARAMETER["False northing",463000, 151s LENGTHUNIT["metre",1], 151s ID["EPSG",8807]]], 151s CS[Cartesian,2], 151s AXIS["easting (X)",east, 151s ORDER[1], 151s LENGTHUNIT["metre",1]], 151s AXIS["northing (Y)",north, 151s ORDER[2], 151s LENGTHUNIT["metre",1]], 151s USAGE[ 151s SCOPE["Engineering survey, topographic mapping."], 151s AREA["Netherlands - onshore, including Waddenzee, Dutch Wadden Islands and 12-mile offshore coastal zone."], 151s BBOX[50.75,3.2,53.7,7.22]], 151s ID["EPSG",28992]] 151s > 151s > # compare inputs: 151s > sp = as(st, "Spatial") 151s > fullgrid(meuse.grid) = TRUE 151s > all.equal(sp, meuse.grid["dist"], check.attributes = FALSE) 151s [1] "Names: Lengths (5, 1) differ (string compare on first 1)" 151s [2] "Names: 1 string mismatch" 151s > all.equal(sp, meuse.grid["dist"], check.attributes = TRUE, use.names = FALSE) 151s [1] "Names: Lengths (5, 1) differ (string compare on first 1)" 151s [2] "Names: 1 string mismatch" 151s [3] "Attributes: < Component 3: Names: 1 string mismatch >" 151s [4] "Attributes: < Component 3: Length mismatch: comparison on first 1 components >" 151s [5] "Attributes: < Component 3: Component 1: Mean relative difference: 1.08298 >" 151s [6] "Attributes: < Component 4: Attributes: < Component 2: names for current but not for target > >" 151s [7] "Attributes: < Component 4: Attributes: < Component 3: names for current but not for target > >" 151s > 151s > # kriging: 151s > st_crs(st) = st_crs(meuse_sf) = NA # GDAL roundtrip messes them up! 151s > k_st = if (Sys.getenv("USER") == "travis") { 151s + try(krige(log(zinc)~1, meuse_sf, st, v.fit)) 151s + } else { 151s + krige(log(zinc)~1, meuse_sf, st, v.fit) 151s + } 152s [using ordinary kriging] 152s > k_st 152s stars object with 2 dimensions and 2 attributes 152s attribute(s): 152s Min. 1st Qu. Median Mean 3rd Qu. Max. NA's 152s var1.pred 4.7765547 5.2376293 5.5728839 5.7072287 6.1717619 7.4399911 5009 152s var1.var 0.0854949 0.1372864 0.1621838 0.1853319 0.2116152 0.5002756 5009 152s dimension(s): 152s from to offset delta x/y 152s x 1 78 178440 40 [x] 152s y 1 104 333760 -40 [y] 152s > 152s > # handle factors, when going to stars? 152s > k_sp_grd$cls = cut(k_sp_grd$var1.pred, c(0, 5, 6, 7, 8, 9)) 152s > st_as_stars(k_sp_grd) 152s stars object with 2 dimensions and 3 attributes 152s attribute(s): 152s var1.pred var1.var cls 152s Min. :4.777 Min. :0.085 (0,5]: 316 152s 1st Qu.:5.238 1st Qu.:0.137 (5,6]:1778 152s Median :5.573 Median :0.162 (6,7]: 962 152s Mean :5.707 Mean :0.185 (7,8]: 47 152s 3rd Qu.:6.172 3rd Qu.:0.212 (8,9]: 0 152s Max. :7.440 Max. :0.500 NA's :5009 152s NA's :5009 NA's :5009 152s dimension(s): 152s from to offset delta refsys x/y 152s x 1 78 178440 40 Amersfoort / RD New [x] 152s y 1 104 333760 -40 Amersfoort / RD New [y] 152s > if (require(raster, quietly = TRUE)) { 152s + print(st_as_stars(raster::stack(k_sp_grd))) # check 152s + print(all.equal(st_redimension(st_as_stars(k_sp_grd)), st_as_stars(raster::stack(k_sp_grd)), check.attributes=FALSE)) 152s + } 157s stars object with 3 dimensions and 1 attribute 157s attribute(s): 157s Min. 1st Qu. Median Mean 3rd Qu. Max. NA's 157s var1.pred 0.0854949 0.2116778 2 2.710347 5.237542 7.439991 15027 157s dimension(s): 157s from to offset delta refsys values 157s x 1 78 178440 40 Amersfoort / RD New NULL 157s y 1 104 333760 -40 Amersfoort / RD New NULL 157s band 1 3 NA NA NA var1.pred, var1.var , cls 157s x/y 157s x [x] 157s y [y] 157s band 158s [1] TRUE 158s > 158s > suppressPackageStartupMessages(library(spacetime)) 158s > 158s > Sys.setenv(TZ="") 158s > tm = as.POSIXct("2019-02-25 15:37:24 CET") 158s > n = 4 158s > s = stars:::st_stars(list(foo = array(1:(n^3), rep(n,3))), 158s + stars:::create_dimensions(list( 158s + x = stars:::create_dimension(from = 1, to = n, offset = 10, delta = 0.5), 158s + y = stars:::create_dimension(from = 1, to = n, offset = 0, delta = -0.7), 158s + time = stars:::create_dimension(values = tm + 1:n)), 158s + raster = stars:::get_raster(dimensions = c("x", "y"))) 158s + ) 158s > s 158s stars object with 3 dimensions and 1 attribute 158s attribute(s): 158s Min. 1st Qu. Median Mean 3rd Qu. Max. 158s foo 1 16.75 32.5 32.5 48.25 64 158s dimension(s): 158s from to offset delta refsys x/y 158s x 1 4 10 0.5 NA [x] 158s y 1 4 0 -0.7 NA [y] 158s time 1 4 2019-02-25 15:37:25 Universal 1 secs POSIXct 158s > 158s > as.data.frame(s) 158s x y time foo 158s 1 10.25 -0.35 2019-02-25 15:37:25 1 158s 2 10.75 -0.35 2019-02-25 15:37:25 2 158s 3 11.25 -0.35 2019-02-25 15:37:25 3 158s 4 11.75 -0.35 2019-02-25 15:37:25 4 158s 5 10.25 -1.05 2019-02-25 15:37:25 5 158s 6 10.75 -1.05 2019-02-25 15:37:25 6 158s 7 11.25 -1.05 2019-02-25 15:37:25 7 158s 8 11.75 -1.05 2019-02-25 15:37:25 8 158s 9 10.25 -1.75 2019-02-25 15:37:25 9 158s 10 10.75 -1.75 2019-02-25 15:37:25 10 158s 11 11.25 -1.75 2019-02-25 15:37:25 11 158s 12 11.75 -1.75 2019-02-25 15:37:25 12 158s 13 10.25 -2.45 2019-02-25 15:37:25 13 158s 14 10.75 -2.45 2019-02-25 15:37:25 14 158s 15 11.25 -2.45 2019-02-25 15:37:25 15 158s 16 11.75 -2.45 2019-02-25 15:37:25 16 158s 17 10.25 -0.35 2019-02-25 15:37:26 17 158s 18 10.75 -0.35 2019-02-25 15:37:26 18 158s 19 11.25 -0.35 2019-02-25 15:37:26 19 158s 20 11.75 -0.35 2019-02-25 15:37:26 20 158s 21 10.25 -1.05 2019-02-25 15:37:26 21 158s 22 10.75 -1.05 2019-02-25 15:37:26 22 158s 23 11.25 -1.05 2019-02-25 15:37:26 23 158s 24 11.75 -1.05 2019-02-25 15:37:26 24 158s 25 10.25 -1.75 2019-02-25 15:37:26 25 158s 26 10.75 -1.75 2019-02-25 15:37:26 26 158s 27 11.25 -1.75 2019-02-25 15:37:26 27 158s 28 11.75 -1.75 2019-02-25 15:37:26 28 158s 29 10.25 -2.45 2019-02-25 15:37:26 29 158s 30 10.75 -2.45 2019-02-25 15:37:26 30 158s 31 11.25 -2.45 2019-02-25 15:37:26 31 158s 32 11.75 -2.45 2019-02-25 15:37:26 32 158s 33 10.25 -0.35 2019-02-25 15:37:27 33 158s 34 10.75 -0.35 2019-02-25 15:37:27 34 158s 35 11.25 -0.35 2019-02-25 15:37:27 35 158s 36 11.75 -0.35 2019-02-25 15:37:27 36 158s 37 10.25 -1.05 2019-02-25 15:37:27 37 158s 38 10.75 -1.05 2019-02-25 15:37:27 38 158s 39 11.25 -1.05 2019-02-25 15:37:27 39 158s 40 11.75 -1.05 2019-02-25 15:37:27 40 158s 41 10.25 -1.75 2019-02-25 15:37:27 41 158s 42 10.75 -1.75 2019-02-25 15:37:27 42 158s 43 11.25 -1.75 2019-02-25 15:37:27 43 158s 44 11.75 -1.75 2019-02-25 15:37:27 44 158s 45 10.25 -2.45 2019-02-25 15:37:27 45 158s 46 10.75 -2.45 2019-02-25 15:37:27 46 158s 47 11.25 -2.45 2019-02-25 15:37:27 47 158s 48 11.75 -2.45 2019-02-25 15:37:27 48 158s 49 10.25 -0.35 2019-02-25 15:37:28 49 158s 50 10.75 -0.35 2019-02-25 15:37:28 50 158s 51 11.25 -0.35 2019-02-25 15:37:28 51 158s 52 11.75 -0.35 2019-02-25 15:37:28 52 158s 53 10.25 -1.05 2019-02-25 15:37:28 53 158s 54 10.75 -1.05 2019-02-25 15:37:28 54 158s 55 11.25 -1.05 2019-02-25 15:37:28 55 158s 56 11.75 -1.05 2019-02-25 15:37:28 56 158s 57 10.25 -1.75 2019-02-25 15:37:28 57 158s 58 10.75 -1.75 2019-02-25 15:37:28 58 158s 59 11.25 -1.75 2019-02-25 15:37:28 59 158s 60 11.75 -1.75 2019-02-25 15:37:28 60 158s 61 10.25 -2.45 2019-02-25 15:37:28 61 158s 62 10.75 -2.45 2019-02-25 15:37:28 62 158s 63 11.25 -2.45 2019-02-25 15:37:28 63 158s 64 11.75 -2.45 2019-02-25 15:37:28 64 158s > plot(s, col = sf.colors(), axes = TRUE) 158s > (s.stfdf = as(s, "STFDF")) 158s An object of class "STFDF" 158s Slot "data": 158s foo 158s 1 1 158s 2 2 158s 3 3 158s 4 4 158s 5 5 158s 6 6 158s 7 7 158s 8 8 158s 9 9 158s 10 10 158s 11 11 158s 12 12 158s 13 13 158s 14 14 158s 15 15 158s 16 16 158s 17 17 158s 18 18 158s 19 19 158s 20 20 158s 21 21 158s 22 22 158s 23 23 158s 24 24 158s 25 25 158s 26 26 158s 27 27 158s 28 28 158s 29 29 158s 30 30 158s 31 31 158s 32 32 158s 33 33 158s 34 34 158s 35 35 158s 36 36 158s 37 37 158s 38 38 158s 39 39 158s 40 40 158s 41 41 158s 42 42 158s 43 43 158s 44 44 158s 45 45 158s 46 46 158s 47 47 158s 48 48 158s 49 49 158s 50 50 158s 51 51 158s 52 52 158s 53 53 158s 54 54 158s 55 55 158s 56 56 158s 57 57 158s 58 58 158s 59 59 158s 60 60 158s 61 61 158s 62 62 158s 63 63 158s 64 64 158s 158s Slot "sp": 158s Object of class SpatialPixels 158s Grid topology: 158s cellcentre.offset cellsize cells.dim 158s x 10.25 0.5 4 158s y -2.45 0.7 4 158s SpatialPoints: 158s x y 158s [1,] 10.25 -0.35 158s [2,] 10.75 -0.35 158s [3,] 11.25 -0.35 158s [4,] 11.75 -0.35 158s [5,] 10.25 -1.05 158s [6,] 10.75 -1.05 158s [7,] 11.25 -1.05 158s [8,] 11.75 -1.05 158s [9,] 10.25 -1.75 158s [10,] 10.75 -1.75 158s [11,] 11.25 -1.75 158s [12,] 11.75 -1.75 158s [13,] 10.25 -2.45 158s [14,] 10.75 -2.45 158s [15,] 11.25 -2.45 158s [16,] 11.75 -2.45 158s Coordinate Reference System (CRS) arguments: NA 158s 158s Slot "time": 158s timeIndex 158s 2019-02-25 15:37:25 1 158s 2019-02-25 15:37:26 2 158s 2019-02-25 15:37:27 3 158s 2019-02-25 15:37:28 4 158s 158s Slot "endTime": 158s [1] "2019-02-25 15:37:26 Universal" "2019-02-25 15:37:27 Universal" 158s [3] "2019-02-25 15:37:28 Universal" "2019-02-25 15:37:29 Universal" 158s 158s > stplot(s.stfdf, scales = list(draw = TRUE)) 158s > 158s > (s2 = st_as_stars(s.stfdf)) 158s stars object with 3 dimensions and 1 attribute 158s attribute(s): 158s Min. 1st Qu. Median Mean 3rd Qu. Max. 158s foo 1 16.75 32.5 32.5 48.25 64 158s dimension(s): 158s from to offset delta refsys x/y 158s x 1 4 10 0.5 NA [x] 158s y 1 4 -1.11e-16 -0.7 NA [y] 158s time 1 4 2019-02-25 15:37:25 Universal 1 secs POSIXct 158s > plot(s2, col = sf.colors(), axes = TRUE) 158s > all.equal(s, s2, check.attributes = FALSE) 158s [1] TRUE 158s > 158s > # multiple simulations: 158s > data(meuse, package = "sp") 158s > data(meuse.grid, package = "sp") 158s > coordinates(meuse.grid) <- ~x+y 158s > gridded(meuse.grid) <- TRUE 158s > meuse.grid = st_as_stars(meuse.grid) 158s > meuse_sf = st_as_sf(meuse, coords = c("x", "y")) 158s > g = gstat(NULL, "zinc", zinc~1, meuse_sf, model = vgm(1, "Exp", 300), nmax = 10) 158s > g = gstat(g, "lead", lead~1, meuse_sf, model = vgm(1, "Exp", 300), nmax = 10, fill.cross = TRUE) 158s > set.seed(123) 158s > (p = predict(g, meuse.grid, nsim = 5)) 158s drawing 5 multivariate GLS realisations of beta... 158s [using conditional Gaussian simulation] 158s stars object with 3 dimensions and 2 attributes 158s attribute(s): 158s Min. 1st Qu. Median Mean 3rd Qu. Max. NA's 158s zinc 101.7643 199.59256 300.2140 399.8017 544.0327 1817.2057 25045 158s lead 32.7799 73.03151 107.9339 133.1725 178.8162 638.9396 25045 158s dimension(s): 158s from to offset delta values x/y 158s x 1 78 178440 40 NULL [x] 158s y 1 104 333760 -40 NULL [y] 158s sample 1 5 NA NA sim1,...,sim5 158s > 158s BEGIN TEST unproj.R 159s 159s R version 4.4.1 (2024-06-14) -- "Race for Your Life" 159s Copyright (C) 2024 The R Foundation for Statistical Computing 159s Platform: powerpc64le-unknown-linux-gnu 159s 159s R is free software and comes with ABSOLUTELY NO WARRANTY. 159s You are welcome to redistribute it under certain conditions. 159s Type 'license()' or 'licence()' for distribution details. 159s 159s R is a collaborative project with many contributors. 159s Type 'contributors()' for more information and 159s 'citation()' on how to cite R or R packages in publications. 159s 159s Type 'demo()' for some demos, 'help()' for on-line help, or 159s 'help.start()' for an HTML browser interface to help. 159s Type 'q()' to quit R. 159s 159s > # DOI 10.1007/s11004-011-9344-7 159s > # http://mypage.iu.edu/~srobeson/Pubs/variogram_sphere_mathgeo_2011.pdf 159s > 159s > suppressPackageStartupMessages(library(sp)) 159s > library(gstat) 159s > 159s > if (require(sp, quietly = TRUE) && require(fields, quietly = TRUE) && require(sf, quietly = TRUE)) { 159s + data(meuse) 159s + coordinates(meuse) = ~x+y 159s + proj4string(meuse) = CRS("+init=epsg:28992") 159s + ll = "+proj=longlat +ellps=WGS84" 159s + # meuse.ll = spTransform(meuse, CRS("+proj=longlat +ellps=WGS84")) 159s + meuse.ll = as(st_transform(sf::st_as_sf(meuse), sf::st_crs(ll)), "Spatial") 159s + meuse.ll[1:10,] 159s + variogram(log(zinc)~1, meuse.ll) 159s + 159s + cloud1 = variogram(log(zinc)~1, meuse, cloud=T, cutoff=6000) 159s + cloud2 = variogram(log(zinc)~1, meuse.ll, cloud=T, cutoff=6) 159s + 159s + plot(cloud1$dist/1000, cloud2$dist, xlab="Amersfoort, km", ylab = "Long/lat") 159s + abline(0,1) 159s + 159s + data(ozone2) 159s + oz = SpatialPointsDataFrame(ozone2$lon.lat, 159s + data.frame(t(ozone2$y)), 159s + proj4string=CRS("+proj=longlat +ellps=WGS84")) 159s + variogram(X870731~1,oz[!is.na(oz$X870731),]) 159s + utm16 = "+proj=utm +zone=16" 159s + # oz.utm = spTransform(oz, utm16) 159s + oz.utm = as(sf::st_transform(sf::st_as_sf(oz), utm16) , "Spatial") 159s + variogram(X870731~1,oz.utm[!is.na(oz$X870731),]) 159s + 159s + # Timothy Hilton, r-sig-geo, Sept 14, 2008: 159s + 159s + foo <- 159s + structure(list(z = c(-1.95824831109744, -1.9158901643563, 4.22211761150161, 159s + 3.23356929459598, 1.12038389231868, 0.34613850821113, 1.12589932643631, 159s + 23.517912251617, 3.0519158690268, 3.20261431141517, -2.10947106854739 159s + ), lon = c(-125.29228, -82.1556, -98.524722, -99.948333, -104.691741, 159s + -79.420833, -105.100533, -88.291867, -72.171478, -121.556944, 159s + -89.34765), lat = c(49.87217, 48.2167, 55.905833, 56.635833, 159s + 53.916264, 39.063333, 48.307883, 40.0061, 42.537756, 44.448889, 159s + 46.242017)), .Names = c("z", "lon", "lat"), row.names = c(NA, 159s + -11L), class = "data.frame") 159s + 159s + coordinates(foo) <- ~lon+lat 159s + 159s + proj4string(foo) <- CRS('+proj=longlat +ellps=WGS84') 159s + 159s + vg.foo <- variogram(z~1, foo, cloud=TRUE, cutoff=1e10) 159s + 159s + cat('==========\nvariogram:\n') 159s + print(head(vg.foo)) 159s + 159s + cat('==========\nspDistsN1 Distances:\n') 159s + print(spDistsN1(coordinates(foo), coordinates(foo)[1,], longlat=TRUE)) 159s + } 160s Spam version 2.10-0 (2023-10-23) is loaded. 160s Type 'help( Spam)' or 'demo( spam)' for a short introduction 160s and overview of this package. 160s Help for individual functions is also obtained by adding the 160s suffix '.spam' to the function name, e.g. 'help( chol.spam)'. 160s 160s Attaching package: ‘spam’ 160s 160s The following objects are masked from ‘package:base’: 160s 160s backsolve, forwardsolve 160s 160s 160s Try help(fields) to get started. 160s Linking to GEOS 3.12.2, GDAL 3.9.1, PROJ 9.5.0; sf_use_s2() is TRUE 160s WARNING: different compile-time and runtime versions for GEOS found: 160s Linked against: 3.12.2-CAPI-1.18.2 compiled against: 3.13.0-CAPI-1.19.0 160s It is probably a good idea to reinstall sf (and maybe lwgeom too) 161s ========== 161s variogram: 161s dist gamma dir.hor dir.ver id left right 161s 1 3115.1190 8.971063e-04 0 0 var1 2 1 161s 2 1908.0468 1.909846e+01 0 0 var1 3 1 161s 3 1405.6211 1.883757e+01 0 0 var1 3 2 161s 4 1837.5667 1.347749e+01 0 0 var1 4 1 161s 5 1522.8765 1.325847e+01 0 0 var1 4 2 161s 6 119.9386 4.886139e-01 0 0 var1 4 3 161s ========== 161s spDistsN1 Distances: 161s [1] 0.0000 3115.1190 1908.0468 1837.5667 1481.6293 3775.6751 1480.4477 161s [8] 3081.7541 4090.4022 665.9348 2683.1516 161s > 161s Warning messages: 161s 1: package ‘sf’ was built under R version 4.4.2 161s 2: In CPL_crs_from_input(x) : 161s GDAL Message 1: +init=epsg:XXXX syntax is deprecated. It might return a CRS with a non-EPSG compliant axis order. 161s BEGIN TEST variogram.R 161s 161s R version 4.4.1 (2024-06-14) -- "Race for Your Life" 161s Copyright (C) 2024 The R Foundation for Statistical Computing 161s Platform: powerpc64le-unknown-linux-gnu 161s 161s R is free software and comes with ABSOLUTELY NO WARRANTY. 161s You are welcome to redistribute it under certain conditions. 161s Type 'license()' or 'licence()' for distribution details. 161s 161s R is a collaborative project with many contributors. 161s Type 'contributors()' for more information and 161s 'citation()' on how to cite R or R packages in publications. 161s 161s Type 'demo()' for some demos, 'help()' for on-line help, or 161s 'help.start()' for an HTML browser interface to help. 161s Type 'q()' to quit R. 161s 161s > library(sp) 161s > library(gstat) 162s > data(meuse) 162s > variogram(log(zinc)~1, ~x+y, meuse) 162s np dist gamma dir.hor dir.ver id 162s 1 57 79.29244 0.1234479 0 0 var1 162s 2 299 163.97367 0.2162185 0 0 var1 162s 3 419 267.36483 0.3027859 0 0 var1 162s 4 457 372.73542 0.4121448 0 0 var1 162s 5 547 478.47670 0.4634128 0 0 var1 162s 6 533 585.34058 0.5646933 0 0 var1 162s 7 574 693.14526 0.5689683 0 0 var1 162s 8 564 796.18365 0.6186769 0 0 var1 162s 9 589 903.14650 0.6471479 0 0 var1 162s 10 543 1011.29177 0.6915705 0 0 var1 162s 11 500 1117.86235 0.7033984 0 0 var1 162s 12 477 1221.32810 0.6038770 0 0 var1 162s 13 452 1329.16407 0.6517158 0 0 var1 162s 14 457 1437.25620 0.5665318 0 0 var1 162s 15 415 1543.20248 0.5748227 0 0 var1 162s > 162s > coordinates(meuse) <- ~ x + y 162s > variogram(log(zinc)~1, meuse) 162s np dist gamma dir.hor dir.ver id 162s 1 57 79.29244 0.1234479 0 0 var1 162s 2 299 163.97367 0.2162185 0 0 var1 162s 3 419 267.36483 0.3027859 0 0 var1 162s 4 457 372.73542 0.4121448 0 0 var1 162s 5 547 478.47670 0.4634128 0 0 var1 162s 6 533 585.34058 0.5646933 0 0 var1 162s 7 574 693.14526 0.5689683 0 0 var1 162s 8 564 796.18365 0.6186769 0 0 var1 162s 9 589 903.14650 0.6471479 0 0 var1 162s 10 543 1011.29177 0.6915705 0 0 var1 162s 11 500 1117.86235 0.7033984 0 0 var1 162s 12 477 1221.32810 0.6038770 0 0 var1 162s 13 452 1329.16407 0.6517158 0 0 var1 162s 14 457 1437.25620 0.5665318 0 0 var1 162s 15 415 1543.20248 0.5748227 0 0 var1 162s > 162s > ind=seq(1,155,2) 162s > var1= meuse[ind,] 162s > var2= meuse[-ind,] 162s > g <- gstat(NULL, id = "lead", form = lead ~ 1, data=var1) 162s > g <- gstat(g, id = "zinc", form = zinc ~ 1, data=var2) 162s > v.cross <- variogram(g) 162s > plot(v.cross) 162s > 162s > 162s BEGIN TEST vdist.R 162s 162s R version 4.4.1 (2024-06-14) -- "Race for Your Life" 162s Copyright (C) 2024 The R Foundation for Statistical Computing 162s Platform: powerpc64le-unknown-linux-gnu 162s 162s R is free software and comes with ABSOLUTELY NO WARRANTY. 162s You are welcome to redistribute it under certain conditions. 162s Type 'license()' or 'licence()' for distribution details. 162s 162s R is a collaborative project with many contributors. 162s Type 'contributors()' for more information and 162s 'citation()' on how to cite R or R packages in publications. 162s 162s Type 'demo()' for some demos, 'help()' for on-line help, or 162s 'help.start()' for an HTML browser interface to help. 162s Type 'q()' to quit R. 162s 162s > library(sp) 163s > library(gstat) 163s > 163s > data(meuse) 163s > coordinates(meuse) = ~x+y 163s > data(meuse.grid) 163s > gridded(meuse.grid) = ~x+y 163s > 163s > mg = meuse.grid 163s > gridded(mg) = FALSE 163s > mg= mg[1500,] 163s > krige(log(zinc)~1,meuse,mg,vgm(1, "Exp", 300, anis=c(0,0.01)), 163s + vdist=FALSE, maxdist=1000,nmax=10) 163s [using ordinary kriging] 163s coordinates var1.pred var1.var 163s 1500 (180260, 331300) 5.007376 1.102622 163s > krige(log(zinc)~1,meuse,mg,vgm(1, "Exp", 300, anis=c(0,0.01)), 163s + vdist=TRUE, maxdist=1000,nmax=10) 163s [using ordinary kriging] 163s coordinates var1.pred var1.var 163s 1500 (180260, 331300) 5.50671 1.100095 163s > 164s autopkgtest [00:59:00]: test run-unit-test: -----------------------] 164s run-unit-test PASS 164s autopkgtest [00:59:00]: test run-unit-test: - - - - - - - - - - results - - - - - - - - - - 165s autopkgtest [00:59:01]: test pkg-r-autopkgtest: preparing testbed 166s Reading package lists... 166s Building dependency tree... 166s Reading state information... 166s Starting pkgProblemResolver with broken count: 0 166s Starting 2 pkgProblemResolver with broken count: 0 166s Done 167s The following additional packages will be installed: 167s build-essential cpp cpp-14 cpp-14-powerpc64le-linux-gnu 167s cpp-powerpc64le-linux-gnu dctrl-tools g++ g++-14 167s g++-14-powerpc64le-linux-gnu g++-powerpc64le-linux-gnu gcc gcc-14 167s gcc-14-powerpc64le-linux-gnu gcc-powerpc64le-linux-gnu gfortran gfortran-14 167s gfortran-14-powerpc64le-linux-gnu gfortran-powerpc64le-linux-gnu 167s icu-devtools libasan8 libblas-dev libbz2-dev libcc1-0 libdeflate-dev 167s libgcc-14-dev libgfortran-14-dev libicu-dev libisl23 libitm1 libjpeg-dev 167s libjpeg-turbo8-dev libjpeg8-dev liblapack-dev liblsan0 liblzma-dev libmpc3 167s libncurses-dev libpcre2-16-0 libpcre2-32-0 libpcre2-dev libpcre2-posix3 167s libpkgconf3 libpng-dev libquadmath0 libreadline-dev libstdc++-14-dev 167s libtirpc-dev libtsan2 libubsan1 pkg-r-autopkgtest pkgconf pkgconf-bin 167s r-base-dev r-cran-backports r-cran-base64url r-cran-batchtools r-cran-brew 167s r-cran-checkmate r-cran-cli r-cran-crayon r-cran-data.table r-cran-fs 167s r-cran-future.batchtools r-cran-glue r-cran-hms r-cran-lifecycle 167s r-cran-pkgconfig r-cran-prettyunits r-cran-progress r-cran-r6 167s r-cran-rappdirs r-cran-stringi r-cran-vctrs r-cran-withr zlib1g-dev 167s Suggested packages: 167s cpp-doc gcc-14-locales cpp-14-doc debtags gcc-14-doc gcc-multilib 167s manpages-dev autoconf automake libtool flex bison gdb gcc-doc 167s gdb-powerpc64le-linux-gnu gfortran-doc gfortran-14-doc libcoarrays-dev 167s liblapack-doc icu-doc liblzma-doc ncurses-doc readline-doc libstdc++-14-doc 167s texlive-base texlive-latex-base texlive-plain-generic 167s texlive-fonts-recommended texlive-fonts-extra texlive-extra-utils 167s texlive-latex-recommended texlive-latex-extra texinfo r-cran-knitr 167s r-cran-rmarkdown r-cran-doparallel r-cran-foreach r-cran-parallelmap 167s r-cran-rpart r-cran-snow r-cran-tibble r-cran-rstudioapi gridengine-client 167s slurm-client r-cran-lubridate r-cran-covr r-cran-testthat r-cran-roxygen2 167s Recommended packages: 167s bzip2-doc libpng-tools r-cran-testthat r-cran-base64enc r-cran-openssl 167s r-cran-ranger r-cran-fastmatch r-cran-devtools r-cran-ggplot2 r-cran-knitr 167s r-cran-rmarkdown r-cran-tinytest r-cran-tibble r-cran-callr r-cran-covr 167s r-cran-htmltools r-cran-htmlwidgets r-cran-mockery r-cran-processx r-cran-ps 167s r-cran-rprojroot r-cran-rstudioapi r-cran-whoami r-cran-bit64 r-cran-bit 167s r-cran-r.utils r-cran-yaml r-cran-markdown r-cran-pillar r-cran-spelling 167s r-cran-r.rsp r-cran-dplyr r-cran-rsqlite r-cran-waldo r-cran-lintr 167s r-cran-tidyverse r-cran-generics r-cran-pkgdown r-cran-xml2 r-cran-zeallot 167s The following NEW packages will be installed: 167s autopkgtest-satdep build-essential cpp cpp-14 cpp-14-powerpc64le-linux-gnu 167s cpp-powerpc64le-linux-gnu dctrl-tools g++ g++-14 167s g++-14-powerpc64le-linux-gnu g++-powerpc64le-linux-gnu gcc gcc-14 167s gcc-14-powerpc64le-linux-gnu gcc-powerpc64le-linux-gnu gfortran gfortran-14 167s gfortran-14-powerpc64le-linux-gnu gfortran-powerpc64le-linux-gnu 167s icu-devtools libasan8 libblas-dev libbz2-dev libcc1-0 libdeflate-dev 167s libgcc-14-dev libgfortran-14-dev libicu-dev libisl23 libitm1 libjpeg-dev 167s libjpeg-turbo8-dev libjpeg8-dev liblapack-dev liblsan0 liblzma-dev libmpc3 167s libncurses-dev libpcre2-16-0 libpcre2-32-0 libpcre2-dev libpcre2-posix3 167s libpkgconf3 libpng-dev libquadmath0 libreadline-dev libstdc++-14-dev 167s libtirpc-dev libtsan2 libubsan1 pkg-r-autopkgtest pkgconf pkgconf-bin 167s r-base-dev r-cran-backports r-cran-base64url r-cran-batchtools r-cran-brew 167s r-cran-checkmate r-cran-cli r-cran-crayon r-cran-data.table r-cran-fs 167s r-cran-future.batchtools r-cran-glue r-cran-hms r-cran-lifecycle 167s r-cran-pkgconfig r-cran-prettyunits r-cran-progress r-cran-r6 167s r-cran-rappdirs r-cran-stringi r-cran-vctrs r-cran-withr zlib1g-dev 167s 0 upgraded, 76 newly installed, 0 to remove and 0 not upgraded. 167s Need to get 102 MB/102 MB of archives. 167s After this operation, 362 MB of additional disk space will be used. 167s Get:1 /tmp/autopkgtest.jPmDeB/2-autopkgtest-satdep.deb autopkgtest-satdep ppc64el 0 [764 B] 167s Get:2 http://ftpmaster.internal/ubuntu plucky/main ppc64el libisl23 ppc64el 0.27-1 [882 kB] 167s Get:3 http://ftpmaster.internal/ubuntu plucky/main ppc64el libmpc3 ppc64el 1.3.1-1build2 [62.1 kB] 167s Get:4 http://ftpmaster.internal/ubuntu plucky/main ppc64el cpp-14-powerpc64le-linux-gnu ppc64el 14.2.0-7ubuntu1 [10.5 MB] 168s Get:5 http://ftpmaster.internal/ubuntu plucky/main ppc64el cpp-14 ppc64el 14.2.0-7ubuntu1 [1030 B] 168s Get:6 http://ftpmaster.internal/ubuntu plucky/main ppc64el cpp-powerpc64le-linux-gnu ppc64el 4:14.1.0-2ubuntu1 [5456 B] 168s Get:7 http://ftpmaster.internal/ubuntu plucky/main ppc64el cpp ppc64el 4:14.1.0-2ubuntu1 [22.5 kB] 168s Get:8 http://ftpmaster.internal/ubuntu plucky/main ppc64el libcc1-0 ppc64el 14.2.0-7ubuntu1 [48.1 kB] 168s Get:9 http://ftpmaster.internal/ubuntu plucky/main ppc64el libitm1 ppc64el 14.2.0-7ubuntu1 [31.9 kB] 168s Get:10 http://ftpmaster.internal/ubuntu plucky/main ppc64el libasan8 ppc64el 14.2.0-7ubuntu1 [2945 kB] 168s Get:11 http://ftpmaster.internal/ubuntu plucky/main ppc64el liblsan0 ppc64el 14.2.0-7ubuntu1 [1322 kB] 168s Get:12 http://ftpmaster.internal/ubuntu plucky/main ppc64el libtsan2 ppc64el 14.2.0-7ubuntu1 [2694 kB] 168s Get:13 http://ftpmaster.internal/ubuntu plucky/main ppc64el libubsan1 ppc64el 14.2.0-7ubuntu1 [1191 kB] 168s Get:14 http://ftpmaster.internal/ubuntu plucky/main ppc64el libquadmath0 ppc64el 14.2.0-7ubuntu1 [158 kB] 168s Get:15 http://ftpmaster.internal/ubuntu plucky/main ppc64el libgcc-14-dev ppc64el 14.2.0-7ubuntu1 [1620 kB] 168s Get:16 http://ftpmaster.internal/ubuntu plucky/main ppc64el gcc-14-powerpc64le-linux-gnu ppc64el 14.2.0-7ubuntu1 [20.6 MB] 168s Get:17 http://ftpmaster.internal/ubuntu plucky/main ppc64el gcc-14 ppc64el 14.2.0-7ubuntu1 [526 kB] 168s Get:18 http://ftpmaster.internal/ubuntu plucky/main ppc64el gcc-powerpc64le-linux-gnu ppc64el 4:14.1.0-2ubuntu1 [1222 B] 168s Get:19 http://ftpmaster.internal/ubuntu plucky/main ppc64el gcc ppc64el 4:14.1.0-2ubuntu1 [5006 B] 168s Get:20 http://ftpmaster.internal/ubuntu plucky/main ppc64el libstdc++-14-dev ppc64el 14.2.0-7ubuntu1 [2672 kB] 169s Get:21 http://ftpmaster.internal/ubuntu plucky/main ppc64el g++-14-powerpc64le-linux-gnu ppc64el 14.2.0-7ubuntu1 [12.0 MB] 169s Get:22 http://ftpmaster.internal/ubuntu plucky/main ppc64el g++-14 ppc64el 14.2.0-7ubuntu1 [19.8 kB] 169s Get:23 http://ftpmaster.internal/ubuntu plucky/main ppc64el g++-powerpc64le-linux-gnu ppc64el 4:14.1.0-2ubuntu1 [968 B] 169s Get:24 http://ftpmaster.internal/ubuntu plucky/main ppc64el g++ ppc64el 4:14.1.0-2ubuntu1 [1090 B] 169s Get:25 http://ftpmaster.internal/ubuntu plucky/main ppc64el build-essential ppc64el 12.10ubuntu1 [4936 B] 169s Get:26 http://ftpmaster.internal/ubuntu plucky/main ppc64el dctrl-tools ppc64el 2.24-3build3 [109 kB] 169s Get:27 http://ftpmaster.internal/ubuntu plucky/main ppc64el libgfortran-14-dev ppc64el 14.2.0-7ubuntu1 [621 kB] 169s Get:28 http://ftpmaster.internal/ubuntu plucky/main ppc64el gfortran-14-powerpc64le-linux-gnu ppc64el 14.2.0-7ubuntu1 [11.3 MB] 169s Get:29 http://ftpmaster.internal/ubuntu plucky/main ppc64el gfortran-14 ppc64el 14.2.0-7ubuntu1 [11.6 kB] 169s Get:30 http://ftpmaster.internal/ubuntu plucky/main ppc64el gfortran-powerpc64le-linux-gnu ppc64el 4:14.1.0-2ubuntu1 [1024 B] 169s Get:31 http://ftpmaster.internal/ubuntu plucky/main ppc64el gfortran ppc64el 4:14.1.0-2ubuntu1 [1168 B] 169s Get:32 http://ftpmaster.internal/ubuntu plucky/main ppc64el icu-devtools ppc64el 74.2-1ubuntu4 [248 kB] 169s Get:33 http://ftpmaster.internal/ubuntu plucky/main ppc64el libblas-dev ppc64el 3.12.0-3build2 [289 kB] 169s Get:34 http://ftpmaster.internal/ubuntu plucky/main ppc64el libbz2-dev ppc64el 1.0.8-6 [50.2 kB] 169s Get:35 http://ftpmaster.internal/ubuntu plucky/main ppc64el libdeflate-dev ppc64el 1.21-1 [70.8 kB] 169s Get:36 http://ftpmaster.internal/ubuntu plucky/main ppc64el libicu-dev ppc64el 74.2-1ubuntu4 [12.5 MB] 170s Get:37 http://ftpmaster.internal/ubuntu plucky/main ppc64el libjpeg-turbo8-dev ppc64el 2.1.5-2ubuntu2 [364 kB] 170s Get:38 http://ftpmaster.internal/ubuntu plucky/main ppc64el libjpeg8-dev ppc64el 8c-2ubuntu11 [1484 B] 170s Get:39 http://ftpmaster.internal/ubuntu plucky/main ppc64el libjpeg-dev ppc64el 8c-2ubuntu11 [1486 B] 170s Get:40 http://ftpmaster.internal/ubuntu plucky/main ppc64el liblapack-dev ppc64el 3.12.0-3build2 [6077 kB] 170s Get:41 http://ftpmaster.internal/ubuntu plucky/main ppc64el libncurses-dev ppc64el 6.5-2 [480 kB] 170s Get:42 http://ftpmaster.internal/ubuntu plucky/main ppc64el libpcre2-16-0 ppc64el 10.42-4ubuntu3 [254 kB] 170s Get:43 http://ftpmaster.internal/ubuntu plucky/main ppc64el libpcre2-32-0 ppc64el 10.42-4ubuntu3 [238 kB] 170s Get:44 http://ftpmaster.internal/ubuntu plucky/main ppc64el libpcre2-posix3 ppc64el 10.42-4ubuntu3 [7108 B] 170s Get:45 http://ftpmaster.internal/ubuntu plucky/main ppc64el libpcre2-dev ppc64el 10.42-4ubuntu3 [817 kB] 170s Get:46 http://ftpmaster.internal/ubuntu plucky/main ppc64el libpkgconf3 ppc64el 1.8.1-3ubuntu1 [37.1 kB] 170s Get:47 http://ftpmaster.internal/ubuntu plucky/main ppc64el zlib1g-dev ppc64el 1:1.3.dfsg+really1.3.1-1ubuntu1 [902 kB] 170s Get:48 http://ftpmaster.internal/ubuntu plucky/main ppc64el libpng-dev ppc64el 1.6.44-1 [323 kB] 170s Get:49 http://ftpmaster.internal/ubuntu plucky/main ppc64el libreadline-dev ppc64el 8.2-5 [230 kB] 170s Get:50 http://ftpmaster.internal/ubuntu plucky/main ppc64el liblzma-dev ppc64el 5.6.2-2 [206 kB] 170s Get:51 http://ftpmaster.internal/ubuntu plucky/main ppc64el pkgconf-bin ppc64el 1.8.1-3ubuntu1 [22.5 kB] 170s Get:52 http://ftpmaster.internal/ubuntu plucky/main ppc64el pkgconf ppc64el 1.8.1-3ubuntu1 [16.8 kB] 170s Get:53 http://ftpmaster.internal/ubuntu plucky/main ppc64el libtirpc-dev ppc64el 1.3.4+ds-1.3 [223 kB] 170s Get:54 http://ftpmaster.internal/ubuntu plucky/universe ppc64el r-base-dev all 4.4.1-1 [4338 B] 170s Get:55 http://ftpmaster.internal/ubuntu plucky/universe ppc64el pkg-r-autopkgtest all 20231212ubuntu1 [6448 B] 170s Get:56 http://ftpmaster.internal/ubuntu plucky/universe ppc64el r-cran-backports ppc64el 1.5.0-2 [122 kB] 170s Get:57 http://ftpmaster.internal/ubuntu plucky/universe ppc64el r-cran-base64url ppc64el 1.4-2build1 [27.1 kB] 170s Get:58 http://ftpmaster.internal/ubuntu plucky/universe ppc64el r-cran-brew all 1.0-10-1 [77.7 kB] 170s Get:59 http://ftpmaster.internal/ubuntu plucky/universe ppc64el r-cran-checkmate ppc64el 2.3.1-1 [721 kB] 170s Get:60 http://ftpmaster.internal/ubuntu plucky/universe ppc64el r-cran-data.table ppc64el 1.15.4+dfsg-2.2 [1926 kB] 170s Get:61 http://ftpmaster.internal/ubuntu plucky/universe ppc64el r-cran-fs ppc64el 1.6.4+dfsg-1 [248 kB] 170s Get:62 http://ftpmaster.internal/ubuntu plucky/universe ppc64el r-cran-crayon all 1.5.2-1 [164 kB] 170s Get:63 http://ftpmaster.internal/ubuntu plucky/universe ppc64el r-cran-cli ppc64el 3.6.2-1 [1405 kB] 170s Get:64 http://ftpmaster.internal/ubuntu plucky/universe ppc64el r-cran-glue ppc64el 1.7.0-1 [155 kB] 170s Get:65 http://ftpmaster.internal/ubuntu plucky/universe ppc64el r-cran-lifecycle all 1.0.4+dfsg-1 [110 kB] 170s Get:66 http://ftpmaster.internal/ubuntu plucky/universe ppc64el r-cran-pkgconfig all 2.0.3-2build1 [19.7 kB] 170s Get:67 http://ftpmaster.internal/ubuntu plucky/universe ppc64el r-cran-vctrs ppc64el 0.6.5-1 [1399 kB] 170s Get:68 http://ftpmaster.internal/ubuntu plucky/universe ppc64el r-cran-hms all 1.1.3-1 [96.5 kB] 170s Get:69 http://ftpmaster.internal/ubuntu plucky/universe ppc64el r-cran-prettyunits all 1.2.0-1 [162 kB] 170s Get:70 http://ftpmaster.internal/ubuntu plucky/universe ppc64el r-cran-r6 all 2.5.1-1 [99.0 kB] 170s Get:71 http://ftpmaster.internal/ubuntu plucky/universe ppc64el r-cran-progress all 1.2.3-1 [91.9 kB] 170s Get:72 http://ftpmaster.internal/ubuntu plucky/universe ppc64el r-cran-rappdirs ppc64el 0.3.3-1 [47.7 kB] 170s Get:73 http://ftpmaster.internal/ubuntu plucky/universe ppc64el r-cran-stringi ppc64el 1.8.3-1 [919 kB] 170s Get:74 http://ftpmaster.internal/ubuntu plucky/universe ppc64el r-cran-withr all 3.0.0+dfsg-1 [228 kB] 170s Get:75 http://ftpmaster.internal/ubuntu plucky/universe ppc64el r-cran-batchtools ppc64el 0.9.17+dfsg-1 [713 kB] 170s Get:76 http://ftpmaster.internal/ubuntu plucky/universe ppc64el r-cran-future.batchtools all 0.12.1+dfsg-1 [185 kB] 171s Fetched 102 MB in 4s (26.6 MB/s) 171s Selecting previously unselected package libisl23:ppc64el. 171s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 80099 files and directories currently installed.) 171s Preparing to unpack .../00-libisl23_0.27-1_ppc64el.deb ... 171s Unpacking libisl23:ppc64el (0.27-1) ... 171s Selecting previously unselected package libmpc3:ppc64el. 171s Preparing to unpack .../01-libmpc3_1.3.1-1build2_ppc64el.deb ... 171s Unpacking libmpc3:ppc64el (1.3.1-1build2) ... 171s Selecting previously unselected package cpp-14-powerpc64le-linux-gnu. 171s Preparing to unpack .../02-cpp-14-powerpc64le-linux-gnu_14.2.0-7ubuntu1_ppc64el.deb ... 171s Unpacking cpp-14-powerpc64le-linux-gnu (14.2.0-7ubuntu1) ... 171s Selecting previously unselected package cpp-14. 171s Preparing to unpack .../03-cpp-14_14.2.0-7ubuntu1_ppc64el.deb ... 171s Unpacking cpp-14 (14.2.0-7ubuntu1) ... 171s Selecting previously unselected package cpp-powerpc64le-linux-gnu. 171s Preparing to unpack .../04-cpp-powerpc64le-linux-gnu_4%3a14.1.0-2ubuntu1_ppc64el.deb ... 171s Unpacking cpp-powerpc64le-linux-gnu (4:14.1.0-2ubuntu1) ... 171s Selecting previously unselected package cpp. 171s Preparing to unpack .../05-cpp_4%3a14.1.0-2ubuntu1_ppc64el.deb ... 171s Unpacking cpp (4:14.1.0-2ubuntu1) ... 171s Selecting previously unselected package libcc1-0:ppc64el. 171s Preparing to unpack .../06-libcc1-0_14.2.0-7ubuntu1_ppc64el.deb ... 171s Unpacking libcc1-0:ppc64el (14.2.0-7ubuntu1) ... 171s Selecting previously unselected package libitm1:ppc64el. 171s Preparing to unpack .../07-libitm1_14.2.0-7ubuntu1_ppc64el.deb ... 171s Unpacking libitm1:ppc64el (14.2.0-7ubuntu1) ... 171s Selecting previously unselected package libasan8:ppc64el. 171s Preparing to unpack .../08-libasan8_14.2.0-7ubuntu1_ppc64el.deb ... 171s Unpacking libasan8:ppc64el (14.2.0-7ubuntu1) ... 171s Selecting previously unselected package liblsan0:ppc64el. 171s Preparing to unpack .../09-liblsan0_14.2.0-7ubuntu1_ppc64el.deb ... 171s Unpacking liblsan0:ppc64el (14.2.0-7ubuntu1) ... 171s Selecting previously unselected package libtsan2:ppc64el. 171s Preparing to unpack .../10-libtsan2_14.2.0-7ubuntu1_ppc64el.deb ... 171s Unpacking libtsan2:ppc64el (14.2.0-7ubuntu1) ... 171s Selecting previously unselected package libubsan1:ppc64el. 171s Preparing to unpack .../11-libubsan1_14.2.0-7ubuntu1_ppc64el.deb ... 171s Unpacking libubsan1:ppc64el (14.2.0-7ubuntu1) ... 171s Selecting previously unselected package libquadmath0:ppc64el. 171s Preparing to unpack .../12-libquadmath0_14.2.0-7ubuntu1_ppc64el.deb ... 171s Unpacking libquadmath0:ppc64el (14.2.0-7ubuntu1) ... 172s Selecting previously unselected package libgcc-14-dev:ppc64el. 172s Preparing to unpack .../13-libgcc-14-dev_14.2.0-7ubuntu1_ppc64el.deb ... 172s Unpacking libgcc-14-dev:ppc64el (14.2.0-7ubuntu1) ... 172s Selecting previously unselected package gcc-14-powerpc64le-linux-gnu. 172s Preparing to unpack .../14-gcc-14-powerpc64le-linux-gnu_14.2.0-7ubuntu1_ppc64el.deb ... 172s Unpacking gcc-14-powerpc64le-linux-gnu (14.2.0-7ubuntu1) ... 172s Selecting previously unselected package gcc-14. 172s Preparing to unpack .../15-gcc-14_14.2.0-7ubuntu1_ppc64el.deb ... 172s Unpacking gcc-14 (14.2.0-7ubuntu1) ... 172s Selecting previously unselected package gcc-powerpc64le-linux-gnu. 172s Preparing to unpack .../16-gcc-powerpc64le-linux-gnu_4%3a14.1.0-2ubuntu1_ppc64el.deb ... 172s Unpacking gcc-powerpc64le-linux-gnu (4:14.1.0-2ubuntu1) ... 172s Selecting previously unselected package gcc. 172s Preparing to unpack .../17-gcc_4%3a14.1.0-2ubuntu1_ppc64el.deb ... 172s Unpacking gcc (4:14.1.0-2ubuntu1) ... 172s Selecting previously unselected package libstdc++-14-dev:ppc64el. 172s Preparing to unpack .../18-libstdc++-14-dev_14.2.0-7ubuntu1_ppc64el.deb ... 172s Unpacking libstdc++-14-dev:ppc64el (14.2.0-7ubuntu1) ... 172s Selecting previously unselected package g++-14-powerpc64le-linux-gnu. 172s Preparing to unpack .../19-g++-14-powerpc64le-linux-gnu_14.2.0-7ubuntu1_ppc64el.deb ... 172s Unpacking g++-14-powerpc64le-linux-gnu (14.2.0-7ubuntu1) ... 172s Selecting previously unselected package g++-14. 172s Preparing to unpack .../20-g++-14_14.2.0-7ubuntu1_ppc64el.deb ... 172s Unpacking g++-14 (14.2.0-7ubuntu1) ... 172s Selecting previously unselected package g++-powerpc64le-linux-gnu. 172s Preparing to unpack .../21-g++-powerpc64le-linux-gnu_4%3a14.1.0-2ubuntu1_ppc64el.deb ... 172s Unpacking g++-powerpc64le-linux-gnu (4:14.1.0-2ubuntu1) ... 172s Selecting previously unselected package g++. 172s Preparing to unpack .../22-g++_4%3a14.1.0-2ubuntu1_ppc64el.deb ... 172s Unpacking g++ (4:14.1.0-2ubuntu1) ... 172s Selecting previously unselected package build-essential. 172s Preparing to unpack .../23-build-essential_12.10ubuntu1_ppc64el.deb ... 172s Unpacking build-essential (12.10ubuntu1) ... 172s Selecting previously unselected package dctrl-tools. 172s Preparing to unpack .../24-dctrl-tools_2.24-3build3_ppc64el.deb ... 172s Unpacking dctrl-tools (2.24-3build3) ... 172s Selecting previously unselected package libgfortran-14-dev:ppc64el. 172s Preparing to unpack .../25-libgfortran-14-dev_14.2.0-7ubuntu1_ppc64el.deb ... 172s Unpacking libgfortran-14-dev:ppc64el (14.2.0-7ubuntu1) ... 172s Selecting previously unselected package gfortran-14-powerpc64le-linux-gnu. 172s Preparing to unpack .../26-gfortran-14-powerpc64le-linux-gnu_14.2.0-7ubuntu1_ppc64el.deb ... 172s Unpacking gfortran-14-powerpc64le-linux-gnu (14.2.0-7ubuntu1) ... 173s Selecting previously unselected package gfortran-14. 173s Preparing to unpack .../27-gfortran-14_14.2.0-7ubuntu1_ppc64el.deb ... 173s Unpacking gfortran-14 (14.2.0-7ubuntu1) ... 173s Selecting previously unselected package gfortran-powerpc64le-linux-gnu. 173s Preparing to unpack .../28-gfortran-powerpc64le-linux-gnu_4%3a14.1.0-2ubuntu1_ppc64el.deb ... 173s Unpacking gfortran-powerpc64le-linux-gnu (4:14.1.0-2ubuntu1) ... 173s Selecting previously unselected package gfortran. 173s Preparing to unpack .../29-gfortran_4%3a14.1.0-2ubuntu1_ppc64el.deb ... 173s Unpacking gfortran (4:14.1.0-2ubuntu1) ... 173s Selecting previously unselected package icu-devtools. 173s Preparing to unpack .../30-icu-devtools_74.2-1ubuntu4_ppc64el.deb ... 173s Unpacking icu-devtools (74.2-1ubuntu4) ... 173s Selecting previously unselected package libblas-dev:ppc64el. 173s Preparing to unpack .../31-libblas-dev_3.12.0-3build2_ppc64el.deb ... 173s Unpacking libblas-dev:ppc64el (3.12.0-3build2) ... 173s Selecting previously unselected package libbz2-dev:ppc64el. 173s Preparing to unpack .../32-libbz2-dev_1.0.8-6_ppc64el.deb ... 173s Unpacking libbz2-dev:ppc64el (1.0.8-6) ... 173s Selecting previously unselected package libdeflate-dev:ppc64el. 173s Preparing to unpack .../33-libdeflate-dev_1.21-1_ppc64el.deb ... 173s Unpacking libdeflate-dev:ppc64el (1.21-1) ... 173s Selecting previously unselected package libicu-dev:ppc64el. 173s Preparing to unpack .../34-libicu-dev_74.2-1ubuntu4_ppc64el.deb ... 173s Unpacking libicu-dev:ppc64el (74.2-1ubuntu4) ... 173s Selecting previously unselected package libjpeg-turbo8-dev:ppc64el. 173s Preparing to unpack .../35-libjpeg-turbo8-dev_2.1.5-2ubuntu2_ppc64el.deb ... 173s Unpacking libjpeg-turbo8-dev:ppc64el (2.1.5-2ubuntu2) ... 173s Selecting previously unselected package libjpeg8-dev:ppc64el. 173s Preparing to unpack .../36-libjpeg8-dev_8c-2ubuntu11_ppc64el.deb ... 173s Unpacking libjpeg8-dev:ppc64el (8c-2ubuntu11) ... 173s Selecting previously unselected package libjpeg-dev:ppc64el. 173s Preparing to unpack .../37-libjpeg-dev_8c-2ubuntu11_ppc64el.deb ... 173s Unpacking libjpeg-dev:ppc64el (8c-2ubuntu11) ... 173s Selecting previously unselected package liblapack-dev:ppc64el. 173s Preparing to unpack .../38-liblapack-dev_3.12.0-3build2_ppc64el.deb ... 173s Unpacking liblapack-dev:ppc64el (3.12.0-3build2) ... 173s Selecting previously unselected package libncurses-dev:ppc64el. 173s Preparing to unpack .../39-libncurses-dev_6.5-2_ppc64el.deb ... 173s Unpacking libncurses-dev:ppc64el (6.5-2) ... 173s Selecting previously unselected package libpcre2-16-0:ppc64el. 173s Preparing to unpack .../40-libpcre2-16-0_10.42-4ubuntu3_ppc64el.deb ... 173s Unpacking libpcre2-16-0:ppc64el (10.42-4ubuntu3) ... 173s Selecting previously unselected package libpcre2-32-0:ppc64el. 173s Preparing to unpack .../41-libpcre2-32-0_10.42-4ubuntu3_ppc64el.deb ... 173s Unpacking libpcre2-32-0:ppc64el (10.42-4ubuntu3) ... 173s Selecting previously unselected package libpcre2-posix3:ppc64el. 173s Preparing to unpack .../42-libpcre2-posix3_10.42-4ubuntu3_ppc64el.deb ... 173s Unpacking libpcre2-posix3:ppc64el (10.42-4ubuntu3) ... 173s Selecting previously unselected package libpcre2-dev:ppc64el. 173s Preparing to unpack .../43-libpcre2-dev_10.42-4ubuntu3_ppc64el.deb ... 173s Unpacking libpcre2-dev:ppc64el (10.42-4ubuntu3) ... 173s Selecting previously unselected package libpkgconf3:ppc64el. 173s Preparing to unpack .../44-libpkgconf3_1.8.1-3ubuntu1_ppc64el.deb ... 173s Unpacking libpkgconf3:ppc64el (1.8.1-3ubuntu1) ... 173s Selecting previously unselected package zlib1g-dev:ppc64el. 173s Preparing to unpack .../45-zlib1g-dev_1%3a1.3.dfsg+really1.3.1-1ubuntu1_ppc64el.deb ... 173s Unpacking zlib1g-dev:ppc64el (1:1.3.dfsg+really1.3.1-1ubuntu1) ... 173s Selecting previously unselected package libpng-dev:ppc64el. 173s Preparing to unpack .../46-libpng-dev_1.6.44-1_ppc64el.deb ... 173s Unpacking libpng-dev:ppc64el (1.6.44-1) ... 173s Selecting previously unselected package libreadline-dev:ppc64el. 173s Preparing to unpack .../47-libreadline-dev_8.2-5_ppc64el.deb ... 173s Unpacking libreadline-dev:ppc64el (8.2-5) ... 173s Selecting previously unselected package liblzma-dev:ppc64el. 173s Preparing to unpack .../48-liblzma-dev_5.6.2-2_ppc64el.deb ... 173s Unpacking liblzma-dev:ppc64el (5.6.2-2) ... 174s Selecting previously unselected package pkgconf-bin. 174s Preparing to unpack .../49-pkgconf-bin_1.8.1-3ubuntu1_ppc64el.deb ... 174s Unpacking pkgconf-bin (1.8.1-3ubuntu1) ... 174s Selecting previously unselected package pkgconf:ppc64el. 174s Preparing to unpack .../50-pkgconf_1.8.1-3ubuntu1_ppc64el.deb ... 174s Unpacking pkgconf:ppc64el (1.8.1-3ubuntu1) ... 174s Selecting previously unselected package libtirpc-dev:ppc64el. 174s Preparing to unpack .../51-libtirpc-dev_1.3.4+ds-1.3_ppc64el.deb ... 174s Unpacking libtirpc-dev:ppc64el (1.3.4+ds-1.3) ... 174s Selecting previously unselected package r-base-dev. 174s Preparing to unpack .../52-r-base-dev_4.4.1-1_all.deb ... 174s Unpacking r-base-dev (4.4.1-1) ... 174s Selecting previously unselected package pkg-r-autopkgtest. 174s Preparing to unpack .../53-pkg-r-autopkgtest_20231212ubuntu1_all.deb ... 174s Unpacking pkg-r-autopkgtest (20231212ubuntu1) ... 174s Selecting previously unselected package r-cran-backports. 174s Preparing to unpack .../54-r-cran-backports_1.5.0-2_ppc64el.deb ... 174s Unpacking r-cran-backports (1.5.0-2) ... 174s Selecting previously unselected package r-cran-base64url. 174s Preparing to unpack .../55-r-cran-base64url_1.4-2build1_ppc64el.deb ... 174s Unpacking r-cran-base64url (1.4-2build1) ... 174s Selecting previously unselected package r-cran-brew. 174s Preparing to unpack .../56-r-cran-brew_1.0-10-1_all.deb ... 174s Unpacking r-cran-brew (1.0-10-1) ... 174s Selecting previously unselected package r-cran-checkmate. 174s Preparing to unpack .../57-r-cran-checkmate_2.3.1-1_ppc64el.deb ... 174s Unpacking r-cran-checkmate (2.3.1-1) ... 174s Selecting previously unselected package r-cran-data.table. 174s Preparing to unpack .../58-r-cran-data.table_1.15.4+dfsg-2.2_ppc64el.deb ... 174s Unpacking r-cran-data.table (1.15.4+dfsg-2.2) ... 174s Selecting previously unselected package r-cran-fs. 174s Preparing to unpack .../59-r-cran-fs_1.6.4+dfsg-1_ppc64el.deb ... 174s Unpacking r-cran-fs (1.6.4+dfsg-1) ... 174s Selecting previously unselected package r-cran-crayon. 174s Preparing to unpack .../60-r-cran-crayon_1.5.2-1_all.deb ... 174s Unpacking r-cran-crayon (1.5.2-1) ... 174s Selecting previously unselected package r-cran-cli. 174s Preparing to unpack .../61-r-cran-cli_3.6.2-1_ppc64el.deb ... 174s Unpacking r-cran-cli (3.6.2-1) ... 174s Selecting previously unselected package r-cran-glue. 174s Preparing to unpack .../62-r-cran-glue_1.7.0-1_ppc64el.deb ... 174s Unpacking r-cran-glue (1.7.0-1) ... 174s Selecting previously unselected package r-cran-lifecycle. 174s Preparing to unpack .../63-r-cran-lifecycle_1.0.4+dfsg-1_all.deb ... 174s Unpacking r-cran-lifecycle (1.0.4+dfsg-1) ... 174s Selecting previously unselected package r-cran-pkgconfig. 174s Preparing to unpack .../64-r-cran-pkgconfig_2.0.3-2build1_all.deb ... 174s Unpacking r-cran-pkgconfig (2.0.3-2build1) ... 174s Selecting previously unselected package r-cran-vctrs. 174s Preparing to unpack .../65-r-cran-vctrs_0.6.5-1_ppc64el.deb ... 174s Unpacking r-cran-vctrs (0.6.5-1) ... 174s Selecting previously unselected package r-cran-hms. 174s Preparing to unpack .../66-r-cran-hms_1.1.3-1_all.deb ... 174s Unpacking r-cran-hms (1.1.3-1) ... 174s Selecting previously unselected package r-cran-prettyunits. 174s Preparing to unpack .../67-r-cran-prettyunits_1.2.0-1_all.deb ... 174s Unpacking r-cran-prettyunits (1.2.0-1) ... 174s Selecting previously unselected package r-cran-r6. 174s Preparing to unpack .../68-r-cran-r6_2.5.1-1_all.deb ... 174s Unpacking r-cran-r6 (2.5.1-1) ... 174s Selecting previously unselected package r-cran-progress. 174s Preparing to unpack .../69-r-cran-progress_1.2.3-1_all.deb ... 174s Unpacking r-cran-progress (1.2.3-1) ... 174s Selecting previously unselected package r-cran-rappdirs. 174s Preparing to unpack .../70-r-cran-rappdirs_0.3.3-1_ppc64el.deb ... 174s Unpacking r-cran-rappdirs (0.3.3-1) ... 174s Selecting previously unselected package r-cran-stringi. 174s Preparing to unpack .../71-r-cran-stringi_1.8.3-1_ppc64el.deb ... 174s Unpacking r-cran-stringi (1.8.3-1) ... 174s Selecting previously unselected package r-cran-withr. 174s Preparing to unpack .../72-r-cran-withr_3.0.0+dfsg-1_all.deb ... 174s Unpacking r-cran-withr (3.0.0+dfsg-1) ... 174s Selecting previously unselected package r-cran-batchtools. 174s Preparing to unpack .../73-r-cran-batchtools_0.9.17+dfsg-1_ppc64el.deb ... 174s Unpacking r-cran-batchtools (0.9.17+dfsg-1) ... 174s Selecting previously unselected package r-cran-future.batchtools. 174s Preparing to unpack .../74-r-cran-future.batchtools_0.12.1+dfsg-1_all.deb ... 174s Unpacking r-cran-future.batchtools (0.12.1+dfsg-1) ... 174s Selecting previously unselected package autopkgtest-satdep. 174s Preparing to unpack .../75-2-autopkgtest-satdep.deb ... 174s Unpacking autopkgtest-satdep (0) ... 174s Setting up r-cran-fs (1.6.4+dfsg-1) ... 174s Setting up libjpeg-turbo8-dev:ppc64el (2.1.5-2ubuntu2) ... 174s Setting up libncurses-dev:ppc64el (6.5-2) ... 174s Setting up r-cran-withr (3.0.0+dfsg-1) ... 174s Setting up r-cran-backports (1.5.0-2) ... 174s Setting up r-cran-prettyunits (1.2.0-1) ... 174s Setting up r-cran-checkmate (2.3.1-1) ... 174s Setting up libreadline-dev:ppc64el (8.2-5) ... 174s Setting up r-cran-data.table (1.15.4+dfsg-2.2) ... 174s Setting up r-cran-glue (1.7.0-1) ... 174s Setting up r-cran-cli (3.6.2-1) ... 174s Setting up r-cran-lifecycle (1.0.4+dfsg-1) ... 174s Setting up libpcre2-16-0:ppc64el (10.42-4ubuntu3) ... 174s Setting up r-cran-pkgconfig (2.0.3-2build1) ... 174s Setting up libpcre2-32-0:ppc64el (10.42-4ubuntu3) ... 174s Setting up r-cran-brew (1.0-10-1) ... 174s Setting up libtirpc-dev:ppc64el (1.3.4+ds-1.3) ... 174s Setting up libpkgconf3:ppc64el (1.8.1-3ubuntu1) ... 174s Setting up r-cran-stringi (1.8.3-1) ... 174s Setting up libquadmath0:ppc64el (14.2.0-7ubuntu1) ... 174s Setting up r-cran-crayon (1.5.2-1) ... 174s Setting up libmpc3:ppc64el (1.3.1-1build2) ... 174s Setting up icu-devtools (74.2-1ubuntu4) ... 174s Setting up pkgconf-bin (1.8.1-3ubuntu1) ... 174s Setting up liblzma-dev:ppc64el (5.6.2-2) ... 174s Setting up libubsan1:ppc64el (14.2.0-7ubuntu1) ... 174s Setting up zlib1g-dev:ppc64el (1:1.3.dfsg+really1.3.1-1ubuntu1) ... 174s Setting up libpcre2-posix3:ppc64el (10.42-4ubuntu3) ... 174s Setting up libasan8:ppc64el (14.2.0-7ubuntu1) ... 174s Setting up libtsan2:ppc64el (14.2.0-7ubuntu1) ... 174s Setting up r-cran-r6 (2.5.1-1) ... 174s Setting up libjpeg8-dev:ppc64el (8c-2ubuntu11) ... 174s Setting up libisl23:ppc64el (0.27-1) ... 174s Setting up libdeflate-dev:ppc64el (1.21-1) ... 174s Setting up libicu-dev:ppc64el (74.2-1ubuntu4) ... 174s Setting up libcc1-0:ppc64el (14.2.0-7ubuntu1) ... 174s Setting up r-cran-vctrs (0.6.5-1) ... 174s Setting up r-cran-rappdirs (0.3.3-1) ... 174s Setting up liblsan0:ppc64el (14.2.0-7ubuntu1) ... 174s Setting up libblas-dev:ppc64el (3.12.0-3build2) ... 174s update-alternatives: using /usr/lib/powerpc64le-linux-gnu/blas/libblas.so to provide /usr/lib/powerpc64le-linux-gnu/libblas.so (libblas.so-powerpc64le-linux-gnu) in auto mode 174s Setting up dctrl-tools (2.24-3build3) ... 174s Setting up libitm1:ppc64el (14.2.0-7ubuntu1) ... 174s Setting up libbz2-dev:ppc64el (1.0.8-6) ... 174s Setting up r-cran-base64url (1.4-2build1) ... 174s Setting up libpcre2-dev:ppc64el (10.42-4ubuntu3) ... 174s Setting up libpng-dev:ppc64el (1.6.44-1) ... 174s Setting up libjpeg-dev:ppc64el (8c-2ubuntu11) ... 174s Setting up pkgconf:ppc64el (1.8.1-3ubuntu1) ... 174s Setting up r-cran-hms (1.1.3-1) ... 174s Setting up liblapack-dev:ppc64el (3.12.0-3build2) ... 174s update-alternatives: using /usr/lib/powerpc64le-linux-gnu/lapack/liblapack.so to provide /usr/lib/powerpc64le-linux-gnu/liblapack.so (liblapack.so-powerpc64le-linux-gnu) in auto mode 174s Setting up cpp-14-powerpc64le-linux-gnu (14.2.0-7ubuntu1) ... 174s Setting up cpp-14 (14.2.0-7ubuntu1) ... 174s Setting up libgcc-14-dev:ppc64el (14.2.0-7ubuntu1) ... 174s Setting up libstdc++-14-dev:ppc64el (14.2.0-7ubuntu1) ... 174s Setting up r-cran-progress (1.2.3-1) ... 174s Setting up cpp-powerpc64le-linux-gnu (4:14.1.0-2ubuntu1) ... 174s Setting up gcc-14-powerpc64le-linux-gnu (14.2.0-7ubuntu1) ... 174s Setting up libgfortran-14-dev:ppc64el (14.2.0-7ubuntu1) ... 174s Setting up g++-14-powerpc64le-linux-gnu (14.2.0-7ubuntu1) ... 174s Setting up gcc-14 (14.2.0-7ubuntu1) ... 174s Setting up gcc-powerpc64le-linux-gnu (4:14.1.0-2ubuntu1) ... 174s Setting up r-cran-batchtools (0.9.17+dfsg-1) ... 174s Setting up cpp (4:14.1.0-2ubuntu1) ... 174s Setting up g++-14 (14.2.0-7ubuntu1) ... 174s Setting up gfortran-14-powerpc64le-linux-gnu (14.2.0-7ubuntu1) ... 174s Setting up gfortran-14 (14.2.0-7ubuntu1) ... 174s Setting up g++-powerpc64le-linux-gnu (4:14.1.0-2ubuntu1) ... 174s Setting up gcc (4:14.1.0-2ubuntu1) ... 174s Setting up gfortran-powerpc64le-linux-gnu (4:14.1.0-2ubuntu1) ... 174s Setting up r-cran-future.batchtools (0.12.1+dfsg-1) ... 174s Setting up g++ (4:14.1.0-2ubuntu1) ... 174s update-alternatives: using /usr/bin/g++ to provide /usr/bin/c++ (c++) in auto mode 174s Setting up build-essential (12.10ubuntu1) ... 174s Setting up gfortran (4:14.1.0-2ubuntu1) ... 174s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode 174s update-alternatives: warning: skip creation of /usr/share/man/man1/f95.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f95) doesn't exist 174s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode 174s update-alternatives: warning: skip creation of /usr/share/man/man1/f77.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f77) doesn't exist 174s Setting up r-base-dev (4.4.1-1) ... 174s Setting up pkg-r-autopkgtest (20231212ubuntu1) ... 174s Setting up autopkgtest-satdep (0) ... 174s Processing triggers for man-db (2.12.1-3) ... 176s Processing triggers for install-info (7.1.1-1) ... 176s Processing triggers for libc-bin (2.40-1ubuntu3) ... 178s (Reading database ... 83839 files and directories currently installed.) 178s Removing autopkgtest-satdep (0) ... 179s autopkgtest [00:59:15]: test pkg-r-autopkgtest: /usr/share/dh-r/pkg-r-autopkgtest 179s autopkgtest [00:59:15]: test pkg-r-autopkgtest: [----------------------- 179s Test: Try to load the R library gstat 179s 179s R version 4.4.1 (2024-06-14) -- "Race for Your Life" 179s Copyright (C) 2024 The R Foundation for Statistical Computing 179s Platform: powerpc64le-unknown-linux-gnu 179s 179s R is free software and comes with ABSOLUTELY NO WARRANTY. 179s You are welcome to redistribute it under certain conditions. 179s Type 'license()' or 'licence()' for distribution details. 179s 179s R is a collaborative project with many contributors. 179s Type 'contributors()' for more information and 179s 'citation()' on how to cite R or R packages in publications. 179s 179s Type 'demo()' for some demos, 'help()' for on-line help, or 179s 'help.start()' for an HTML browser interface to help. 179s Type 'q()' to quit R. 179s 179s > library('gstat') 180s > 180s > 180s Other tests are currently unsupported! 180s They will be progressively added. 180s autopkgtest [00:59:16]: test pkg-r-autopkgtest: -----------------------] 180s pkg-r-autopkgtest PASS 180s autopkgtest [00:59:16]: test pkg-r-autopkgtest: - - - - - - - - - - results - - - - - - - - - - 181s autopkgtest [00:59:17]: @@@@@@@@@@@@@@@@@@@@ summary 181s run-unit-test PASS 181s pkg-r-autopkgtest PASS 193s nova [W] Using flock in prodstack6-ppc64el 193s Creating nova instance adt-plucky-ppc64el-r-cran-gstat-20241105-005616-juju-7f2275-prod-proposed-migration-environment-2-7a461f56-798b-4df8-ae4d-8650643700dd from image adt/ubuntu-plucky-ppc64el-server-20241104.img (UUID 590d69c0-11bf-4e11-a4e3-7fc667a68b28)...