0s autopkgtest [09:53:58]: starting date and time: 2025-01-29 09:53:58+0000 0s autopkgtest [09:53:58]: git checkout: 325255d2 Merge branch 'pin-any-arch' into 'ubuntu/production' 0s autopkgtest [09:53:58]: host juju-7f2275-prod-proposed-migration-environment-20; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.hfxshasj/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:r-cran-bigmemory --apt-upgrade r-cran-bio3d --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=r-cran-bigmemory/4.6.4-1 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest-ppc64el --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-20@bos03-ppc64el-28.secgroup --name adt-plucky-ppc64el-r-cran-bio3d-20250129-095358-juju-7f2275-prod-proposed-migration-environment-20-535fe98e-5129-453a-8f70-3a0d9b532e21 --image adt/ubuntu-plucky-ppc64el-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-20 --net-id=net_prod-proposed-migration-ppc64el -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,keyserver.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com,radosgw.ps5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/ 99s autopkgtest [09:55:37]: testbed dpkg architecture: ppc64el 100s autopkgtest [09:55:38]: testbed apt version: 2.9.18 100s autopkgtest [09:55:38]: @@@@@@@@@@@@@@@@@@@@ test bed setup 100s autopkgtest [09:55:38]: testbed release detected to be: None 101s autopkgtest [09:55:39]: updating testbed package index (apt update) 101s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease [110 kB] 102s Hit:2 http://ftpmaster.internal/ubuntu plucky InRelease 102s Hit:3 http://ftpmaster.internal/ubuntu plucky-updates InRelease 102s Hit:4 http://ftpmaster.internal/ubuntu plucky-security InRelease 102s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/universe Sources [607 kB] 102s Get:6 http://ftpmaster.internal/ubuntu plucky-proposed/restricted Sources [8676 B] 102s Get:7 http://ftpmaster.internal/ubuntu plucky-proposed/main Sources [59.5 kB] 102s Get:8 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse Sources [10.4 kB] 102s Get:9 http://ftpmaster.internal/ubuntu plucky-proposed/main ppc64el Packages [81.4 kB] 102s Get:10 http://ftpmaster.internal/ubuntu plucky-proposed/restricted ppc64el Packages [756 B] 102s Get:11 http://ftpmaster.internal/ubuntu plucky-proposed/universe ppc64el Packages [479 kB] 102s Get:12 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse ppc64el Packages [3428 B] 102s Fetched 1361 kB in 1s (1245 kB/s) 103s Reading package lists... 104s Reading package lists... 104s Building dependency tree... 104s Reading state information... 104s Calculating upgrade... 104s The following packages will be upgraded: 104s gzip libsemanage-common libsemanage2 linux-firmware 105s 4 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 105s Need to get 552 MB of archives. 105s After this operation, 11.8 MB of additional disk space will be used. 105s Get:1 http://ftpmaster.internal/ubuntu plucky/main ppc64el gzip ppc64el 1.12-1.1ubuntu2 [115 kB] 105s Get:2 http://ftpmaster.internal/ubuntu plucky/main ppc64el libsemanage-common all 3.7-2.1 [7198 B] 105s Get:3 http://ftpmaster.internal/ubuntu plucky/main ppc64el libsemanage2 ppc64el 3.7-2.1 [115 kB] 105s Get:4 http://ftpmaster.internal/ubuntu plucky/main ppc64el linux-firmware ppc64el 20250127.git7da36bae-0ubuntu1 [552 MB] 121s Fetched 552 MB in 16s (34.1 MB/s) 121s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74772 files and directories currently installed.) 121s Preparing to unpack .../gzip_1.12-1.1ubuntu2_ppc64el.deb ... 121s Unpacking gzip (1.12-1.1ubuntu2) over (1.12-1.1ubuntu1) ... 122s Setting up gzip (1.12-1.1ubuntu2) ... 122s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74772 files and directories currently installed.) 122s Preparing to unpack .../libsemanage-common_3.7-2.1_all.deb ... 122s Unpacking libsemanage-common (3.7-2.1) over (3.7-2build1) ... 122s Setting up libsemanage-common (3.7-2.1) ... 122s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74772 files and directories currently installed.) 122s Preparing to unpack .../libsemanage2_3.7-2.1_ppc64el.deb ... 122s Unpacking libsemanage2:ppc64el (3.7-2.1) over (3.7-2build1) ... 122s Setting up libsemanage2:ppc64el (3.7-2.1) ... 122s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74772 files and directories currently installed.) 122s Preparing to unpack .../linux-firmware_20250127.git7da36bae-0ubuntu1_ppc64el.deb ... 122s Unpacking linux-firmware (20250127.git7da36bae-0ubuntu1) over (20241219.git3f227859-0ubuntu1) ... 125s Setting up linux-firmware (20250127.git7da36bae-0ubuntu1) ... 125s Processing triggers for man-db (2.13.0-1) ... 126s Processing triggers for install-info (7.1.1-1) ... 126s Processing triggers for libc-bin (2.40-4ubuntu1) ... 126s Processing triggers for initramfs-tools (0.142ubuntu35) ... 126s update-initramfs: Generating /boot/initrd.img-6.11.0-8-generic 126s W: No lz4 in /usr/bin:/sbin:/bin, using gzip 136s Reading package lists... 136s Building dependency tree... 136s Reading state information... 136s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 136s autopkgtest [09:56:14]: upgrading testbed (apt dist-upgrade and autopurge) 137s Reading package lists... 137s Building dependency tree... 137s Reading state information... 137s Calculating upgrade...Starting pkgProblemResolver with broken count: 0 137s Starting 2 pkgProblemResolver with broken count: 0 137s Done 138s Entering ResolveByKeep 138s 138s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 138s Reading package lists... 139s Building dependency tree... 139s Reading state information... 139s Starting pkgProblemResolver with broken count: 0 139s Starting 2 pkgProblemResolver with broken count: 0 139s Done 139s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 140s autopkgtest [09:56:18]: rebooting testbed after setup commands that affected boot 177s autopkgtest [09:56:55]: testbed running kernel: Linux 6.11.0-8-generic #8-Ubuntu SMP Mon Sep 16 13:49:23 UTC 2024 183s autopkgtest [09:57:01]: @@@@@@@@@@@@@@@@@@@@ apt-source r-cran-bio3d 185s Get:1 http://ftpmaster.internal/ubuntu plucky/universe r-cran-bio3d 2.4-4-1 (dsc) [2128 B] 185s Get:2 http://ftpmaster.internal/ubuntu plucky/universe r-cran-bio3d 2.4-4-1 (tar) [1545 kB] 185s Get:3 http://ftpmaster.internal/ubuntu plucky/universe r-cran-bio3d 2.4-4-1 (diff) [5340 B] 186s gpgv: Signature made Fri Oct 28 10:07:43 2022 UTC 186s gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 186s gpgv: issuer "tillea@rki.de" 186s gpgv: Can't check signature: No public key 186s dpkg-source: warning: cannot verify inline signature for ./r-cran-bio3d_2.4-4-1.dsc: no acceptable signature found 186s autopkgtest [09:57:04]: testing package r-cran-bio3d version 2.4-4-1 186s autopkgtest [09:57:04]: build not needed 189s autopkgtest [09:57:07]: test run-unit-test: preparing testbed 189s Reading package lists... 189s Building dependency tree... 189s Reading state information... 189s Starting pkgProblemResolver with broken count: 0 189s Starting 2 pkgProblemResolver with broken count: 0 189s Done 190s The following NEW packages will be installed: 190s fontconfig fontconfig-config fonts-dejavu-core fonts-dejavu-mono libblas3 190s libcairo2 libdatrie1 libdeflate0 libfontconfig1 libgfortran5 libgomp1 190s libgraphite2-3 libharfbuzz0b libice6 libjbig0 libjpeg-turbo8 libjpeg8 190s liblapack3 liblerc4 libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 190s libpaper-utils libpaper2 libpixman-1-0 libsharpyuv0 libsm6 libtcl8.6 190s libthai-data libthai0 libtiff6 libtk8.6 libwebp7 libxcb-render0 libxcb-shm0 190s libxft2 libxrender1 libxss1 libxt6t64 littler r-base-core r-cran-bio3d 190s r-cran-brio r-cran-callr r-cran-cli r-cran-crayon r-cran-desc r-cran-diffobj 190s r-cran-digest r-cran-evaluate r-cran-fs r-cran-glue r-cran-jsonlite 190s r-cran-lifecycle r-cran-littler r-cran-magrittr r-cran-pkgbuild 190s r-cran-pkgkitten r-cran-pkgload r-cran-praise r-cran-processx r-cran-ps 190s r-cran-r6 r-cran-rcpp r-cran-rlang r-cran-rprojroot r-cran-testthat 190s r-cran-waldo r-cran-withr unzip x11-common xdg-utils zip 190s 0 upgraded, 73 newly installed, 0 to remove and 0 not upgraded. 190s Need to get 56.4 MB of archives. 190s After this operation, 121 MB of additional disk space will be used. 190s Get:1 http://ftpmaster.internal/ubuntu plucky/main ppc64el fonts-dejavu-mono all 2.37-8 [502 kB] 190s Get:2 http://ftpmaster.internal/ubuntu plucky/main ppc64el fonts-dejavu-core all 2.37-8 [835 kB] 191s Get:3 http://ftpmaster.internal/ubuntu plucky/main ppc64el fontconfig-config ppc64el 2.15.0-1.1ubuntu2 [37.4 kB] 191s Get:4 http://ftpmaster.internal/ubuntu plucky/main ppc64el libfontconfig1 ppc64el 2.15.0-1.1ubuntu2 [190 kB] 191s Get:5 http://ftpmaster.internal/ubuntu plucky/main ppc64el fontconfig ppc64el 2.15.0-1.1ubuntu2 [192 kB] 191s Get:6 http://ftpmaster.internal/ubuntu plucky/main ppc64el libblas3 ppc64el 3.12.0-4 [222 kB] 191s Get:7 http://ftpmaster.internal/ubuntu plucky/main ppc64el libpixman-1-0 ppc64el 0.44.0-3 [334 kB] 191s Get:8 http://ftpmaster.internal/ubuntu plucky/main ppc64el libxcb-render0 ppc64el 1.17.0-2 [17.2 kB] 191s Get:9 http://ftpmaster.internal/ubuntu plucky/main ppc64el libxcb-shm0 ppc64el 1.17.0-2 [5980 B] 191s Get:10 http://ftpmaster.internal/ubuntu plucky/main ppc64el libxrender1 ppc64el 1:0.9.10-1.1build1 [23.1 kB] 191s Get:11 http://ftpmaster.internal/ubuntu plucky/main ppc64el libcairo2 ppc64el 1.18.2-2 [747 kB] 191s Get:12 http://ftpmaster.internal/ubuntu plucky/main ppc64el libdatrie1 ppc64el 0.2.13-3build1 [22.7 kB] 191s Get:13 http://ftpmaster.internal/ubuntu plucky/main ppc64el libdeflate0 ppc64el 1.23-1 [63.4 kB] 191s Get:14 http://ftpmaster.internal/ubuntu plucky/main ppc64el libgfortran5 ppc64el 14.2.0-13ubuntu1 [571 kB] 191s Get:15 http://ftpmaster.internal/ubuntu plucky/main ppc64el libgomp1 ppc64el 14.2.0-13ubuntu1 [161 kB] 191s Get:16 http://ftpmaster.internal/ubuntu plucky/main ppc64el libgraphite2-3 ppc64el 1.3.14-2ubuntu1 [84.6 kB] 191s Get:17 http://ftpmaster.internal/ubuntu plucky/main ppc64el libharfbuzz0b ppc64el 10.2.0-1 [598 kB] 191s Get:18 http://ftpmaster.internal/ubuntu plucky/main ppc64el x11-common all 1:7.7+23ubuntu3 [21.7 kB] 191s Get:19 http://ftpmaster.internal/ubuntu plucky/main ppc64el libice6 ppc64el 2:1.1.1-1 [49.9 kB] 191s Get:20 http://ftpmaster.internal/ubuntu plucky/main ppc64el libjpeg-turbo8 ppc64el 2.1.5-3ubuntu2 [215 kB] 191s Get:21 http://ftpmaster.internal/ubuntu plucky/main ppc64el libjpeg8 ppc64el 8c-2ubuntu11 [2148 B] 191s Get:22 http://ftpmaster.internal/ubuntu plucky/main ppc64el liblapack3 ppc64el 3.12.0-4 [2814 kB] 191s Get:23 http://ftpmaster.internal/ubuntu plucky/main ppc64el liblerc4 ppc64el 4.0.0+ds-5ubuntu1 [298 kB] 191s Get:24 http://ftpmaster.internal/ubuntu plucky/main ppc64el libthai-data all 0.1.29-2build1 [158 kB] 191s Get:25 http://ftpmaster.internal/ubuntu plucky/main ppc64el libthai0 ppc64el 0.1.29-2build1 [21.8 kB] 191s Get:26 http://ftpmaster.internal/ubuntu plucky/main ppc64el libpango-1.0-0 ppc64el 1.56.1-1 [277 kB] 191s Get:27 http://ftpmaster.internal/ubuntu plucky/main ppc64el libpangoft2-1.0-0 ppc64el 1.56.1-1 [58.6 kB] 191s Get:28 http://ftpmaster.internal/ubuntu plucky/main ppc64el libpangocairo-1.0-0 ppc64el 1.56.1-1 [30.6 kB] 191s Get:29 http://ftpmaster.internal/ubuntu plucky/main ppc64el libpaper2 ppc64el 2.2.5-0.3 [18.0 kB] 191s Get:30 http://ftpmaster.internal/ubuntu plucky/main ppc64el libpaper-utils ppc64el 2.2.5-0.3 [15.6 kB] 191s Get:31 http://ftpmaster.internal/ubuntu plucky/main ppc64el libsharpyuv0 ppc64el 1.5.0-0.1 [22.3 kB] 191s Get:32 http://ftpmaster.internal/ubuntu plucky/main ppc64el libsm6 ppc64el 2:1.2.4-1 [18.4 kB] 191s Get:33 http://ftpmaster.internal/ubuntu plucky/main ppc64el libtcl8.6 ppc64el 8.6.16+dfsg-1 [1201 kB] 191s Get:34 http://ftpmaster.internal/ubuntu plucky/main ppc64el libjbig0 ppc64el 2.1-6.1ubuntu2 [35.9 kB] 191s Get:35 http://ftpmaster.internal/ubuntu plucky/main ppc64el libwebp7 ppc64el 1.5.0-0.1 [315 kB] 191s Get:36 http://ftpmaster.internal/ubuntu plucky/main ppc64el libtiff6 ppc64el 4.5.1+git230720-4ubuntu4 [272 kB] 191s Get:37 http://ftpmaster.internal/ubuntu plucky/main ppc64el libxft2 ppc64el 2.3.6-1build1 [61.5 kB] 191s Get:38 http://ftpmaster.internal/ubuntu plucky/main ppc64el libxss1 ppc64el 1:1.2.3-1build3 [7980 B] 191s Get:39 http://ftpmaster.internal/ubuntu plucky/main ppc64el libtk8.6 ppc64el 8.6.16-1 [946 kB] 191s Get:40 http://ftpmaster.internal/ubuntu plucky/main ppc64el libxt6t64 ppc64el 1:1.2.1-1.2build1 [202 kB] 191s Get:41 http://ftpmaster.internal/ubuntu plucky/main ppc64el zip ppc64el 3.0-14ubuntu2 [196 kB] 191s Get:42 http://ftpmaster.internal/ubuntu plucky/main ppc64el unzip ppc64el 6.0-28ubuntu6 [200 kB] 192s Get:43 http://ftpmaster.internal/ubuntu plucky/main ppc64el xdg-utils all 1.2.1-0ubuntu1 [67.5 kB] 192s Get:44 http://ftpmaster.internal/ubuntu plucky/universe ppc64el r-base-core ppc64el 4.4.2-1build1 [28.9 MB] 195s Get:45 http://ftpmaster.internal/ubuntu plucky/universe ppc64el r-cran-littler ppc64el 0.3.20-2 [97.3 kB] 195s Get:46 http://ftpmaster.internal/ubuntu plucky/universe ppc64el littler all 0.3.20-2 [2554 B] 195s Get:47 http://ftpmaster.internal/ubuntu plucky/universe ppc64el r-cran-pkgkitten all 0.2.4-1 [27.2 kB] 195s Get:48 http://ftpmaster.internal/ubuntu plucky/universe ppc64el r-cran-rcpp ppc64el 1.0.14-1 [2006 kB] 195s Get:49 http://ftpmaster.internal/ubuntu plucky/universe ppc64el r-cran-bio3d ppc64el 2.4-4-1 [2999 kB] 195s Get:50 http://ftpmaster.internal/ubuntu plucky/universe ppc64el r-cran-brio ppc64el 1.1.5-1 [39.1 kB] 195s Get:51 http://ftpmaster.internal/ubuntu plucky/universe ppc64el r-cran-ps ppc64el 1.8.1-1 [399 kB] 195s Get:52 http://ftpmaster.internal/ubuntu plucky/universe ppc64el r-cran-r6 all 2.5.1-1 [99.0 kB] 195s Get:53 http://ftpmaster.internal/ubuntu plucky/universe ppc64el r-cran-processx ppc64el 3.8.5-1 [360 kB] 195s Get:54 http://ftpmaster.internal/ubuntu plucky/universe ppc64el r-cran-callr all 3.7.6-1 [458 kB] 195s Get:55 http://ftpmaster.internal/ubuntu plucky/universe ppc64el r-cran-cli ppc64el 3.6.3-1 [1373 kB] 196s Get:56 http://ftpmaster.internal/ubuntu plucky/universe ppc64el r-cran-crayon all 1.5.3-1 [165 kB] 196s Get:57 http://ftpmaster.internal/ubuntu plucky/universe ppc64el r-cran-desc all 1.4.3-1 [359 kB] 196s Get:58 http://ftpmaster.internal/ubuntu plucky/universe ppc64el r-cran-diffobj ppc64el 0.3.5-1 [1118 kB] 196s Get:59 http://ftpmaster.internal/ubuntu plucky/universe ppc64el r-cran-digest ppc64el 0.6.37-1 [223 kB] 196s Get:60 http://ftpmaster.internal/ubuntu plucky/universe ppc64el r-cran-evaluate all 1.0.3-1 [114 kB] 196s Get:61 http://ftpmaster.internal/ubuntu plucky/universe ppc64el r-cran-fs ppc64el 1.6.5+dfsg-1 [248 kB] 196s Get:62 http://ftpmaster.internal/ubuntu plucky/universe ppc64el r-cran-glue ppc64el 1.8.0-1 [165 kB] 196s Get:63 http://ftpmaster.internal/ubuntu plucky/universe ppc64el r-cran-jsonlite ppc64el 1.8.9+dfsg-1 [451 kB] 196s Get:64 http://ftpmaster.internal/ubuntu plucky/universe ppc64el r-cran-rlang ppc64el 1.1.5-1 [1740 kB] 196s Get:65 http://ftpmaster.internal/ubuntu plucky/universe ppc64el r-cran-lifecycle all 1.0.4+dfsg-1 [110 kB] 196s Get:66 http://ftpmaster.internal/ubuntu plucky/universe ppc64el r-cran-magrittr ppc64el 2.0.3-1 [154 kB] 196s Get:67 http://ftpmaster.internal/ubuntu plucky/universe ppc64el r-cran-pkgbuild all 1.4.6-1 [213 kB] 196s Get:68 http://ftpmaster.internal/ubuntu plucky/universe ppc64el r-cran-rprojroot all 2.0.4-2 [125 kB] 196s Get:69 http://ftpmaster.internal/ubuntu plucky/universe ppc64el r-cran-withr all 3.0.2+dfsg-1 [214 kB] 196s Get:70 http://ftpmaster.internal/ubuntu plucky/universe ppc64el r-cran-pkgload all 1.4.0-1 [247 kB] 196s Get:71 http://ftpmaster.internal/ubuntu plucky/universe ppc64el r-cran-praise all 1.0.0-4build1 [20.3 kB] 196s Get:72 http://ftpmaster.internal/ubuntu plucky/universe ppc64el r-cran-waldo all 0.6.1-1 [150 kB] 196s Get:73 http://ftpmaster.internal/ubuntu plucky/universe ppc64el r-cran-testthat ppc64el 3.2.1.1-1 [1646 kB] 197s Preconfiguring packages ... 197s Fetched 56.4 MB in 7s (8248 kB/s) 197s Selecting previously unselected package fonts-dejavu-mono. 197s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74796 files and directories currently installed.) 197s Preparing to unpack .../00-fonts-dejavu-mono_2.37-8_all.deb ... 197s Unpacking fonts-dejavu-mono (2.37-8) ... 197s Selecting previously unselected package fonts-dejavu-core. 197s Preparing to unpack .../01-fonts-dejavu-core_2.37-8_all.deb ... 197s Unpacking fonts-dejavu-core (2.37-8) ... 197s Selecting previously unselected package fontconfig-config. 197s Preparing to unpack .../02-fontconfig-config_2.15.0-1.1ubuntu2_ppc64el.deb ... 198s Unpacking fontconfig-config (2.15.0-1.1ubuntu2) ... 198s Selecting previously unselected package libfontconfig1:ppc64el. 198s Preparing to unpack .../03-libfontconfig1_2.15.0-1.1ubuntu2_ppc64el.deb ... 198s Unpacking libfontconfig1:ppc64el (2.15.0-1.1ubuntu2) ... 198s Selecting previously unselected package fontconfig. 198s Preparing to unpack .../04-fontconfig_2.15.0-1.1ubuntu2_ppc64el.deb ... 198s Unpacking fontconfig (2.15.0-1.1ubuntu2) ... 198s Selecting previously unselected package libblas3:ppc64el. 198s Preparing to unpack .../05-libblas3_3.12.0-4_ppc64el.deb ... 198s Unpacking libblas3:ppc64el (3.12.0-4) ... 198s Selecting previously unselected package libpixman-1-0:ppc64el. 198s Preparing to unpack .../06-libpixman-1-0_0.44.0-3_ppc64el.deb ... 198s Unpacking libpixman-1-0:ppc64el (0.44.0-3) ... 198s Selecting previously unselected package libxcb-render0:ppc64el. 198s Preparing to unpack .../07-libxcb-render0_1.17.0-2_ppc64el.deb ... 198s Unpacking libxcb-render0:ppc64el (1.17.0-2) ... 198s Selecting previously unselected package libxcb-shm0:ppc64el. 198s Preparing to unpack .../08-libxcb-shm0_1.17.0-2_ppc64el.deb ... 198s Unpacking libxcb-shm0:ppc64el (1.17.0-2) ... 198s Selecting previously unselected package libxrender1:ppc64el. 198s Preparing to unpack .../09-libxrender1_1%3a0.9.10-1.1build1_ppc64el.deb ... 198s Unpacking libxrender1:ppc64el (1:0.9.10-1.1build1) ... 198s Selecting previously unselected package libcairo2:ppc64el. 198s Preparing to unpack .../10-libcairo2_1.18.2-2_ppc64el.deb ... 198s Unpacking libcairo2:ppc64el (1.18.2-2) ... 198s Selecting previously unselected package libdatrie1:ppc64el. 198s Preparing to unpack .../11-libdatrie1_0.2.13-3build1_ppc64el.deb ... 198s Unpacking libdatrie1:ppc64el (0.2.13-3build1) ... 198s Selecting previously unselected package libdeflate0:ppc64el. 198s Preparing to unpack .../12-libdeflate0_1.23-1_ppc64el.deb ... 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unselected package libthai-data. 198s Preparing to unpack .../23-libthai-data_0.1.29-2build1_all.deb ... 198s Unpacking libthai-data (0.1.29-2build1) ... 198s Selecting previously unselected package libthai0:ppc64el. 198s Preparing to unpack .../24-libthai0_0.1.29-2build1_ppc64el.deb ... 198s Unpacking libthai0:ppc64el (0.1.29-2build1) ... 198s Selecting previously unselected package libpango-1.0-0:ppc64el. 198s Preparing to unpack .../25-libpango-1.0-0_1.56.1-1_ppc64el.deb ... 198s Unpacking libpango-1.0-0:ppc64el (1.56.1-1) ... 198s Selecting previously unselected package libpangoft2-1.0-0:ppc64el. 198s Preparing to unpack .../26-libpangoft2-1.0-0_1.56.1-1_ppc64el.deb ... 198s Unpacking libpangoft2-1.0-0:ppc64el (1.56.1-1) ... 198s Selecting previously unselected package libpangocairo-1.0-0:ppc64el. 198s Preparing to unpack .../27-libpangocairo-1.0-0_1.56.1-1_ppc64el.deb ... 198s Unpacking libpangocairo-1.0-0:ppc64el (1.56.1-1) ... 198s Selecting previously unselected package 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up libsharpyuv0:ppc64el (1.5.0-0.1) ... 200s Setting up liblerc4:ppc64el (4.0.0+ds-5ubuntu1) ... 200s Setting up libxrender1:ppc64el (1:0.9.10-1.1build1) ... 200s Setting up libdatrie1:ppc64el (0.2.13-3build1) ... 200s Setting up libxcb-render0:ppc64el (1.17.0-2) ... 200s Setting up unzip (6.0-28ubuntu6) ... 200s Setting up x11-common (1:7.7+23ubuntu3) ... 201s Setting up libdeflate0:ppc64el (1.23-1) ... 201s Setting up libxcb-shm0:ppc64el (1.17.0-2) ... 201s Setting up libgomp1:ppc64el (14.2.0-13ubuntu1) ... 201s Setting up libjbig0:ppc64el (2.1-6.1ubuntu2) ... 201s Setting up zip (3.0-14ubuntu2) ... 201s Setting up libblas3:ppc64el (3.12.0-4) ... 201s update-alternatives: using /usr/lib/powerpc64le-linux-gnu/blas/libblas.so.3 to provide /usr/lib/powerpc64le-linux-gnu/libblas.so.3 (libblas.so.3-powerpc64le-linux-gnu) in auto mode 201s Setting up fonts-dejavu-mono (2.37-8) ... 201s Setting up libtcl8.6:ppc64el (8.6.16+dfsg-1) ... 201s Setting up fonts-dejavu-core (2.37-8) ... 201s 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(0.1.29-2build1) ... 201s Setting up libtiff6:ppc64el (4.5.1+git230720-4ubuntu4) ... 201s Setting up libfontconfig1:ppc64el (2.15.0-1.1ubuntu2) ... 201s Setting up libsm6:ppc64el (2:1.2.4-1) ... 201s Setting up fontconfig (2.15.0-1.1ubuntu2) ... 203s Regenerating fonts cache... done. 203s Setting up libxft2:ppc64el (2.3.6-1build1) ... 203s Setting up libtk8.6:ppc64el (8.6.16-1) ... 203s Setting up libpango-1.0-0:ppc64el (1.56.1-1) ... 203s Setting up libcairo2:ppc64el (1.18.2-2) ... 203s Setting up libxt6t64:ppc64el (1:1.2.1-1.2build1) ... 203s Setting up libpangoft2-1.0-0:ppc64el (1.56.1-1) ... 203s Setting up libpangocairo-1.0-0:ppc64el (1.56.1-1) ... 203s Setting up r-base-core (4.4.2-1build1) ... 203s Creating config file /etc/R/Renviron with new version 203s Setting up r-cran-crayon (1.5.3-1) ... 203s Setting up r-cran-ps (1.8.1-1) ... 203s Setting up r-cran-r6 (2.5.1-1) ... 203s Setting up r-cran-pkgkitten (0.2.4-1) ... 203s Setting up r-cran-magrittr (2.0.3-1) ... 203s Setting up r-cran-littler (0.3.20-2) ... 203s Setting up r-cran-fs (1.6.5+dfsg-1) ... 203s Setting up r-cran-rcpp (1.0.14-1) ... 203s Setting up r-cran-brio (1.1.5-1) ... 203s Setting up r-cran-diffobj (0.3.5-1) ... 203s Setting up r-cran-rlang (1.1.5-1) ... 203s Setting up littler (0.3.20-2) ... 203s Setting up r-cran-bio3d (2.4-4-1) ... 203s Setting up r-cran-withr (3.0.2+dfsg-1) ... 203s Setting up r-cran-processx (3.8.5-1) ... 203s Setting up r-cran-praise (1.0.0-4build1) ... 203s Setting up r-cran-digest (0.6.37-1) ... 203s Setting up r-cran-evaluate (1.0.3-1) ... 203s Setting up r-cran-glue (1.8.0-1) ... 203s Setting up r-cran-cli (3.6.3-1) ... 203s Setting up r-cran-lifecycle (1.0.4+dfsg-1) ... 203s Setting up r-cran-rprojroot (2.0.4-2) ... 203s Setting up r-cran-jsonlite (1.8.9+dfsg-1) ... 203s Setting up r-cran-waldo (0.6.1-1) ... 203s Setting up r-cran-callr (3.7.6-1) ... 203s Setting up r-cran-desc (1.4.3-1) ... 203s Setting up r-cran-pkgbuild (1.4.6-1) ... 203s Setting up r-cran-pkgload (1.4.0-1) ... 203s Setting up r-cran-testthat (3.2.1.1-1) ... 203s Processing triggers for libc-bin (2.40-4ubuntu1) ... 203s Processing triggers for man-db (2.13.0-1) ... 205s Processing triggers for install-info (7.1.1-1) ... 206s autopkgtest [09:57:24]: test run-unit-test: [----------------------- 207s BEGIN TEST testthat.R 207s 207s R version 4.4.2 (2024-10-31) -- "Pile of Leaves" 207s Copyright (C) 2024 The R Foundation for Statistical Computing 207s Platform: powerpc64le-unknown-linux-gnu 207s 207s R is free software and comes with ABSOLUTELY NO WARRANTY. 207s You are welcome to redistribute it under certain conditions. 207s Type 'license()' or 'licence()' for distribution details. 207s 207s R is a collaborative project with many contributors. 207s Type 'contributors()' for more information and 207s 'citation()' on how to cite R or R packages in publications. 207s 207s Type 'demo()' for some demos, 'help()' for on-line help, or 207s 'help.start()' for an HTML browser interface to help. 207s Type 'q()' to quit R. 207s 207s > library(testthat) 207s > test_check("bio3d") 207s Loading required package: bio3d 215s [ FAIL 0 | WARN 58 | SKIP 29 | PASS 174 ] 215s 215s == Skipped tests (29) ========================================================== 215s * On CRAN (29): 'test-aanma.R:5:3', 'test-aanma.pdbs.R:10:3', 215s 'test-clean.pdb.R:24:3', 'test-cmap.R:20:3', 'test-cna.R:5:3', 215s 'test-core.find.R:5:3', 'test-dccm.R:27:3', 'test-dccm.R:47:3', 215s 'test-dssp.R:4:3', 'test-fitting.R:64:3', 'test-fitting.R:91:4', 215s 'test-fitting.R:116:4', 'test-get.pdb.R:4:3', 'test-get.pdb.R:24:3', 215s 'test-get.seq.R:4:3', 'test-mol2.R:34:3', 'test-mol2.R:49:3', 215s 'test-mol2.R:82:3', 'test-nma.pdbs.R:5:3', 'test-pdb.annotate.R:5:3', 215s 'test-pdbsplit.R:5:3', 'test-read.all.R:6:3', 'test-read.cif.R:5:3', 215s 'test-read.cif.R:49:3', 'test-read.ncdf.R:4:4', 'test-read.pdb.R:43:3', 215s 'test-read.pdb.R:121:3', 'test-read.pdb.R:141:3', 'test-seqaln.R:5:3' 215s 215s [ FAIL 0 | WARN 58 | SKIP 29 | PASS 174 ] 215s > 216s autopkgtest [09:57:34]: test run-unit-test: -----------------------] 217s autopkgtest [09:57:35]: test run-unit-test: - - - - - - - - - - results - - - - - - - - - - 217s run-unit-test PASS 218s autopkgtest [09:57:36]: test pkg-r-autopkgtest: preparing testbed 218s Reading package lists... 218s Building dependency tree... 218s Reading state information... 218s Starting pkgProblemResolver with broken count: 0 218s Starting 2 pkgProblemResolver with broken count: 0 218s Done 219s The following NEW packages will be installed: 219s build-essential cpp cpp-14 cpp-14-powerpc64le-linux-gnu 219s cpp-powerpc64le-linux-gnu dctrl-tools fonts-font-awesome 219s fonts-glyphicons-halflings fonts-mathjax g++ g++-14 219s g++-14-powerpc64le-linux-gnu g++-powerpc64le-linux-gnu gcc gcc-14 219s gcc-14-powerpc64le-linux-gnu gcc-powerpc64le-linux-gnu gfortran gfortran-14 219s gfortran-14-powerpc64le-linux-gnu gfortran-powerpc64le-linux-gnu 219s icu-devtools javascript-common libaec0 libamd3 libasan8 libblas-dev 219s libboost-dev libboost1.83-dev libbz2-dev libcc1-0 libcolamd3 libdeflate-dev 219s libgcc-14-dev libgfortran-14-dev libglpk40 libhdf5-310 libhdf5-hl-310 219s libicu-dev libisl23 libitm1 libjpeg-dev libjpeg-turbo8-dev libjpeg8-dev 219s libjs-bootstrap libjs-bootstrap4 libjs-d3 libjs-es5-shim libjs-highlight.js 219s libjs-jquery libjs-jquery-datatables libjs-jquery-selectize.js 219s libjs-jquery-ui libjs-json libjs-mathjax libjs-microplugin.js 219s libjs-modernizr libjs-popper.js libjs-prettify libjs-sifter.js 219s libjs-twitter-bootstrap-datepicker liblapack-dev liblsan0 libltdl7 219s liblua5.4-0 liblzma-dev libmpc3 libncurses-dev libnetcdf19t64 libpcre2-16-0 219s libpcre2-32-0 libpcre2-dev libpcre2-posix3 libpkgconf3 libpng-dev 219s libquadmath0 libreadline-dev libstdc++-14-dev libsuitesparseconfig7 libsz2 219s libtirpc-dev libtsan2 libubsan1 node-bootstrap-sass node-html5shiv 219s node-normalize.css pandoc pandoc-data pkg-r-autopkgtest pkgconf pkgconf-bin 219s r-base-dev r-bioc-biocgenerics r-bioc-biostrings r-bioc-genomeinfodb 219s r-bioc-genomeinfodbdata r-bioc-iranges r-bioc-s4vectors r-bioc-ucsc.utils 219s r-bioc-xvector r-bioc-zlibbioc r-cran-askpass r-cran-base64enc r-cran-bh 219s r-cran-bigmemory r-cran-bigmemory.sri r-cran-bitops r-cran-bslib 219s r-cran-cachem r-cran-commonmark r-cran-cpp11 r-cran-curl r-cran-fastmap 219s r-cran-fontawesome r-cran-highr r-cran-htmltools r-cran-httpuv r-cran-httr 219s r-cran-igraph r-cran-jquerylib r-cran-knitr r-cran-later r-cran-lattice 219s r-cran-matrix r-cran-memoise r-cran-mime r-cran-ncdf4 r-cran-openssl 219s r-cran-pkgconfig r-cran-promises r-cran-rappdirs r-cran-rcurl 219s r-cran-rmarkdown r-cran-sass r-cran-shiny r-cran-sourcetools r-cran-sys 219s r-cran-tinytex r-cran-uuid r-cran-vctrs r-cran-xfun r-cran-xml r-cran-xtable 219s r-cran-yaml zlib1g-dev 219s 0 upgraded, 145 newly installed, 0 to remove and 0 not upgraded. 219s Need to get 217 MB of archives. 219s After this operation, 978 MB of additional disk space will be used. 219s Get:1 http://ftpmaster.internal/ubuntu plucky/main ppc64el libisl23 ppc64el 0.27-1 [882 kB] 220s Get:2 http://ftpmaster.internal/ubuntu plucky/main ppc64el libmpc3 ppc64el 1.3.1-1build2 [62.1 kB] 220s Get:3 http://ftpmaster.internal/ubuntu plucky/main ppc64el cpp-14-powerpc64le-linux-gnu ppc64el 14.2.0-13ubuntu1 [10.5 MB] 221s Get:4 http://ftpmaster.internal/ubuntu plucky/main ppc64el cpp-14 ppc64el 14.2.0-13ubuntu1 [1036 B] 221s Get:5 http://ftpmaster.internal/ubuntu plucky/main ppc64el cpp-powerpc64le-linux-gnu ppc64el 4:14.1.0-2ubuntu1 [5456 B] 221s Get:6 http://ftpmaster.internal/ubuntu plucky/main ppc64el cpp ppc64el 4:14.1.0-2ubuntu1 [22.5 kB] 221s Get:7 http://ftpmaster.internal/ubuntu plucky/main ppc64el libcc1-0 ppc64el 14.2.0-13ubuntu1 [48.1 kB] 221s Get:8 http://ftpmaster.internal/ubuntu plucky/main ppc64el libitm1 ppc64el 14.2.0-13ubuntu1 [32.2 kB] 221s Get:9 http://ftpmaster.internal/ubuntu plucky/main ppc64el libasan8 ppc64el 14.2.0-13ubuntu1 [2945 kB] 221s Get:10 http://ftpmaster.internal/ubuntu plucky/main ppc64el liblsan0 ppc64el 14.2.0-13ubuntu1 [1322 kB] 222s Get:11 http://ftpmaster.internal/ubuntu plucky/main ppc64el libtsan2 ppc64el 14.2.0-13ubuntu1 [2695 kB] 222s Get:12 http://ftpmaster.internal/ubuntu plucky/main ppc64el libubsan1 ppc64el 14.2.0-13ubuntu1 [1191 kB] 222s Get:13 http://ftpmaster.internal/ubuntu plucky/main ppc64el libquadmath0 ppc64el 14.2.0-13ubuntu1 [158 kB] 222s Get:14 http://ftpmaster.internal/ubuntu plucky/main ppc64el libgcc-14-dev ppc64el 14.2.0-13ubuntu1 [1620 kB] 222s Get:15 http://ftpmaster.internal/ubuntu plucky/main ppc64el gcc-14-powerpc64le-linux-gnu ppc64el 14.2.0-13ubuntu1 [20.6 MB] 225s Get:16 http://ftpmaster.internal/ubuntu plucky/main ppc64el gcc-14 ppc64el 14.2.0-13ubuntu1 [534 kB] 225s Get:17 http://ftpmaster.internal/ubuntu plucky/main ppc64el gcc-powerpc64le-linux-gnu ppc64el 4:14.1.0-2ubuntu1 [1222 B] 225s Get:18 http://ftpmaster.internal/ubuntu plucky/main ppc64el gcc ppc64el 4:14.1.0-2ubuntu1 [5006 B] 225s Get:19 http://ftpmaster.internal/ubuntu plucky/main ppc64el libstdc++-14-dev ppc64el 14.2.0-13ubuntu1 [2677 kB] 225s Get:20 http://ftpmaster.internal/ubuntu plucky/main ppc64el g++-14-powerpc64le-linux-gnu ppc64el 14.2.0-13ubuntu1 [12.0 MB] 226s Get:21 http://ftpmaster.internal/ubuntu plucky/main ppc64el g++-14 ppc64el 14.2.0-13ubuntu1 [21.1 kB] 226s Get:22 http://ftpmaster.internal/ubuntu plucky/main ppc64el g++-powerpc64le-linux-gnu ppc64el 4:14.1.0-2ubuntu1 [968 B] 226s Get:23 http://ftpmaster.internal/ubuntu plucky/main ppc64el g++ ppc64el 4:14.1.0-2ubuntu1 [1090 B] 226s Get:24 http://ftpmaster.internal/ubuntu plucky/main ppc64el build-essential ppc64el 12.10ubuntu1 [4936 B] 226s Get:25 http://ftpmaster.internal/ubuntu plucky/main ppc64el dctrl-tools ppc64el 2.24-3build3 [109 kB] 226s Get:26 http://ftpmaster.internal/ubuntu plucky/main ppc64el fonts-font-awesome all 5.0.10+really4.7.0~dfsg-4.1 [516 kB] 226s Get:27 http://ftpmaster.internal/ubuntu plucky/universe ppc64el fonts-glyphicons-halflings all 1.009~3.4.1+dfsg-3 [118 kB] 226s Get:28 http://ftpmaster.internal/ubuntu plucky/main ppc64el fonts-mathjax all 2.7.9+dfsg-1 [2208 kB] 227s Get:29 http://ftpmaster.internal/ubuntu plucky/main ppc64el libgfortran-14-dev ppc64el 14.2.0-13ubuntu1 [621 kB] 227s Get:30 http://ftpmaster.internal/ubuntu plucky/main ppc64el gfortran-14-powerpc64le-linux-gnu ppc64el 14.2.0-13ubuntu1 [11.3 MB] 228s Get:31 http://ftpmaster.internal/ubuntu plucky/main ppc64el gfortran-14 ppc64el 14.2.0-13ubuntu1 [13.2 kB] 228s Get:32 http://ftpmaster.internal/ubuntu plucky/main ppc64el gfortran-powerpc64le-linux-gnu ppc64el 4:14.1.0-2ubuntu1 [1024 B] 228s Get:33 http://ftpmaster.internal/ubuntu plucky/main ppc64el gfortran ppc64el 4:14.1.0-2ubuntu1 [1168 B] 228s Get:34 http://ftpmaster.internal/ubuntu plucky/main ppc64el icu-devtools ppc64el 76.1-1ubuntu2 [251 kB] 228s Get:35 http://ftpmaster.internal/ubuntu plucky/main ppc64el javascript-common all 11+nmu1 [5936 B] 228s Get:36 http://ftpmaster.internal/ubuntu plucky/universe ppc64el libaec0 ppc64el 1.1.3-1 [30.1 kB] 228s Get:37 http://ftpmaster.internal/ubuntu plucky/main ppc64el libsuitesparseconfig7 ppc64el 1:7.8.3+dfsg-2 [13.2 kB] 228s Get:38 http://ftpmaster.internal/ubuntu plucky/universe ppc64el libamd3 ppc64el 1:7.8.3+dfsg-2 [37.4 kB] 228s Get:39 http://ftpmaster.internal/ubuntu plucky/main ppc64el libblas-dev ppc64el 3.12.0-4 [289 kB] 228s Get:40 http://ftpmaster.internal/ubuntu plucky/main ppc64el libboost1.83-dev ppc64el 1.83.0-4ubuntu2 [10.7 MB] 229s Get:41 http://ftpmaster.internal/ubuntu plucky/main ppc64el libboost-dev ppc64el 1.83.0.2ubuntu1 [4470 B] 229s Get:42 http://ftpmaster.internal/ubuntu plucky/main ppc64el libbz2-dev ppc64el 1.0.8-6 [50.2 kB] 229s Get:43 http://ftpmaster.internal/ubuntu plucky/main ppc64el libcolamd3 ppc64el 1:7.8.3+dfsg-2 [21.5 kB] 229s Get:44 http://ftpmaster.internal/ubuntu plucky/main ppc64el libdeflate-dev ppc64el 1.23-1 [70.8 kB] 229s Get:45 http://ftpmaster.internal/ubuntu plucky/main ppc64el libltdl7 ppc64el 2.5.4-2 [50.1 kB] 229s Get:46 http://ftpmaster.internal/ubuntu plucky/universe ppc64el libglpk40 ppc64el 5.0-1build2 [467 kB] 229s Get:47 http://ftpmaster.internal/ubuntu plucky/universe ppc64el libsz2 ppc64el 1.1.3-1 [5566 B] 229s Get:48 http://ftpmaster.internal/ubuntu plucky/universe ppc64el libhdf5-310 ppc64el 1.14.5+repack-3 [1523 kB] 229s Get:49 http://ftpmaster.internal/ubuntu plucky/universe ppc64el libhdf5-hl-310 ppc64el 1.14.5+repack-3 [74.9 kB] 229s Get:50 http://ftpmaster.internal/ubuntu plucky/main ppc64el libicu-dev ppc64el 76.1-1ubuntu2 [12.9 MB] 231s Get:51 http://ftpmaster.internal/ubuntu plucky/main ppc64el libjpeg-turbo8-dev ppc64el 2.1.5-3ubuntu2 [358 kB] 231s Get:52 http://ftpmaster.internal/ubuntu plucky/main ppc64el libjpeg8-dev ppc64el 8c-2ubuntu11 [1484 B] 231s Get:53 http://ftpmaster.internal/ubuntu plucky/main ppc64el libjpeg-dev ppc64el 8c-2ubuntu11 [1486 B] 231s Get:54 http://ftpmaster.internal/ubuntu plucky/universe ppc64el libjs-bootstrap all 3.4.1+dfsg-3 [129 kB] 231s Get:55 http://ftpmaster.internal/ubuntu plucky/universe ppc64el libjs-popper.js all 1.16.1+ds-6 [54.1 kB] 231s Get:56 http://ftpmaster.internal/ubuntu plucky/universe ppc64el libjs-bootstrap4 all 4.6.1+dfsg1-4 [537 kB] 231s Get:57 http://ftpmaster.internal/ubuntu plucky/universe ppc64el libjs-d3 all 3.5.17-4 [132 kB] 231s Get:58 http://ftpmaster.internal/ubuntu plucky/universe ppc64el libjs-es5-shim all 4.6.7-2 [39.8 kB] 231s Get:59 http://ftpmaster.internal/ubuntu plucky/universe ppc64el libjs-highlight.js all 9.18.5+dfsg1-2 [385 kB] 231s Get:60 http://ftpmaster.internal/ubuntu plucky/main ppc64el libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [328 kB] 231s Get:61 http://ftpmaster.internal/ubuntu plucky/universe ppc64el libjs-jquery-datatables all 1.11.5+dfsg-2 [146 kB] 231s Get:62 http://ftpmaster.internal/ubuntu plucky/universe ppc64el libjs-sifter.js all 0.6.0+dfsg-3 [12.6 kB] 231s Get:63 http://ftpmaster.internal/ubuntu plucky/universe ppc64el libjs-microplugin.js all 0.0.3+dfsg-1.1 [3712 B] 231s Get:64 http://ftpmaster.internal/ubuntu plucky/universe ppc64el libjs-jquery-selectize.js all 0.12.6+dfsg-1.1 [51.0 kB] 231s Get:65 http://ftpmaster.internal/ubuntu plucky/universe ppc64el libjs-jquery-ui all 1.13.2+dfsg-1 [252 kB] 231s Get:66 http://ftpmaster.internal/ubuntu plucky/universe ppc64el libjs-json all 0~20221030+~1.0.8-1 [20.6 kB] 231s Get:67 http://ftpmaster.internal/ubuntu plucky/universe ppc64el libjs-prettify all 2015.12.04+dfsg-1.1 [39.3 kB] 231s Get:68 http://ftpmaster.internal/ubuntu plucky/main ppc64el liblapack-dev ppc64el 3.12.0-4 [6076 kB] 231s Get:69 http://ftpmaster.internal/ubuntu plucky/main ppc64el liblua5.4-0 ppc64el 5.4.7-1 [211 kB] 231s Get:70 http://ftpmaster.internal/ubuntu plucky/main ppc64el libncurses-dev ppc64el 6.5-2 [480 kB] 232s Get:71 http://ftpmaster.internal/ubuntu plucky/universe ppc64el libnetcdf19t64 ppc64el 1:4.9.2-6ubuntu2 [599 kB] 232s Get:72 http://ftpmaster.internal/ubuntu plucky/main ppc64el libpcre2-16-0 ppc64el 10.42-4ubuntu3 [254 kB] 232s Get:73 http://ftpmaster.internal/ubuntu plucky/main ppc64el libpcre2-32-0 ppc64el 10.42-4ubuntu3 [238 kB] 232s Get:74 http://ftpmaster.internal/ubuntu plucky/main ppc64el libpcre2-posix3 ppc64el 10.42-4ubuntu3 [7108 B] 232s Get:75 http://ftpmaster.internal/ubuntu plucky/main ppc64el libpcre2-dev ppc64el 10.42-4ubuntu3 [817 kB] 232s Get:76 http://ftpmaster.internal/ubuntu plucky/main ppc64el libpkgconf3 ppc64el 1.8.1-4 [37.1 kB] 232s Get:77 http://ftpmaster.internal/ubuntu plucky/main ppc64el zlib1g-dev ppc64el 1:1.3.dfsg+really1.3.1-1ubuntu1 [902 kB] 232s Get:78 http://ftpmaster.internal/ubuntu plucky/main ppc64el libpng-dev ppc64el 1.6.44-3 [325 kB] 232s Get:79 http://ftpmaster.internal/ubuntu plucky/main ppc64el libreadline-dev ppc64el 8.2-6 [230 kB] 232s Get:80 http://ftpmaster.internal/ubuntu plucky/universe ppc64el node-bootstrap-sass all 3.4.3-2 [187 kB] 232s Get:81 http://ftpmaster.internal/ubuntu plucky/universe ppc64el node-html5shiv all 3.7.3+dfsg-5 [13.5 kB] 232s Get:82 http://ftpmaster.internal/ubuntu plucky/universe ppc64el node-normalize.css all 8.0.1-5 [10.8 kB] 232s Get:83 http://ftpmaster.internal/ubuntu plucky/universe ppc64el pandoc-data all 3.1.11.1-3build1 [78.8 kB] 232s Get:84 http://ftpmaster.internal/ubuntu plucky/universe ppc64el pandoc ppc64el 3.1.11.1+ds-2 [30.4 MB] 235s Get:85 http://ftpmaster.internal/ubuntu plucky/main ppc64el liblzma-dev ppc64el 5.6.3-1 [208 kB] 235s Get:86 http://ftpmaster.internal/ubuntu plucky/main ppc64el pkgconf-bin ppc64el 1.8.1-4 [22.5 kB] 235s Get:87 http://ftpmaster.internal/ubuntu plucky/main ppc64el pkgconf ppc64el 1.8.1-4 [16.7 kB] 235s Get:88 http://ftpmaster.internal/ubuntu plucky/main ppc64el libtirpc-dev ppc64el 1.3.4+ds-1.3 [223 kB] 235s Get:89 http://ftpmaster.internal/ubuntu plucky/universe ppc64el r-base-dev all 4.4.2-1build1 [4342 B] 235s Get:90 http://ftpmaster.internal/ubuntu plucky/universe ppc64el pkg-r-autopkgtest all 20231212ubuntu1 [6448 B] 235s Get:91 http://ftpmaster.internal/ubuntu plucky/universe ppc64el r-bioc-biocgenerics all 0.52.0-2 [624 kB] 236s Get:92 http://ftpmaster.internal/ubuntu plucky/universe ppc64el r-bioc-s4vectors ppc64el 0.44.0+dfsg-2 [2078 kB] 236s Get:93 http://ftpmaster.internal/ubuntu plucky/universe ppc64el r-bioc-iranges ppc64el 2.40.1-2 [2312 kB] 236s Get:94 http://ftpmaster.internal/ubuntu plucky/universe ppc64el r-bioc-zlibbioc all 1.52.0+dfsg-2 [10.2 kB] 236s Get:95 http://ftpmaster.internal/ubuntu plucky/universe ppc64el r-bioc-xvector ppc64el 0.46.0-2 [629 kB] 236s Get:96 http://ftpmaster.internal/ubuntu plucky/universe ppc64el r-cran-curl ppc64el 6.1.0+dfsg-1 [197 kB] 236s Get:97 http://ftpmaster.internal/ubuntu plucky/universe ppc64el r-cran-mime ppc64el 0.12-2 [35.9 kB] 236s Get:98 http://ftpmaster.internal/ubuntu plucky/universe ppc64el r-cran-sys ppc64el 3.4.3-1 [45.5 kB] 236s Get:99 http://ftpmaster.internal/ubuntu plucky/universe ppc64el r-cran-askpass ppc64el 1.2.1-1 [24.9 kB] 236s Get:100 http://ftpmaster.internal/ubuntu plucky/universe ppc64el r-cran-openssl ppc64el 2.2.0+dfsg-1 [408 kB] 236s Get:101 http://ftpmaster.internal/ubuntu plucky/universe ppc64el r-cran-httr all 1.4.7+dfsg-1 [459 kB] 236s Get:102 http://ftpmaster.internal/ubuntu plucky/universe ppc64el r-bioc-ucsc.utils all 1.2.0+ds-2 [77.2 kB] 237s Get:103 http://ftpmaster.internal/ubuntu plucky/universe ppc64el r-bioc-genomeinfodbdata all 1.2.13-2 [12.9 MB] 239s Get:104 http://ftpmaster.internal/ubuntu plucky/universe ppc64el r-bioc-genomeinfodb all 1.42.1+dfsg-2 [3883 kB] 239s Get:105 http://ftpmaster.internal/ubuntu plucky/universe ppc64el r-bioc-biostrings ppc64el 2.74.1+dfsg-2 [13.3 MB] 245s Get:106 http://ftpmaster.internal/ubuntu plucky/universe ppc64el r-cran-base64enc ppc64el 0.1-3-3 [28.1 kB] 245s Get:107 http://ftpmaster.internal/ubuntu plucky/universe ppc64el r-cran-bh all 1.84.0-1 [5962 B] 245s Get:108 http://ftpmaster.internal/ubuntu plucky/universe ppc64el r-cran-bigmemory.sri all 0.1.8-1 [13.4 kB] 245s Get:109 http://ftpmaster.internal/ubuntu plucky/universe ppc64el r-cran-uuid ppc64el 1.2-1-1 [51.2 kB] 245s Get:110 http://ftpmaster.internal/ubuntu plucky-proposed/universe ppc64el r-cran-bigmemory ppc64el 4.6.4-1 [479 kB] 245s Get:111 http://ftpmaster.internal/ubuntu plucky/universe ppc64el r-cran-bitops ppc64el 1.0-9-1 [30.4 kB] 245s Get:112 http://ftpmaster.internal/ubuntu plucky/universe ppc64el r-cran-fastmap ppc64el 1.2.0-1 [75.0 kB] 245s Get:113 http://ftpmaster.internal/ubuntu plucky/universe ppc64el r-cran-cachem ppc64el 1.1.0-1 [74.1 kB] 245s Get:114 http://ftpmaster.internal/ubuntu plucky/universe ppc64el r-cran-htmltools ppc64el 0.5.8.1-1 [373 kB] 245s Get:115 http://ftpmaster.internal/ubuntu plucky/universe ppc64el r-cran-jquerylib all 0.1.4+dfsg-4 [13.5 kB] 245s Get:116 http://ftpmaster.internal/ubuntu plucky/universe ppc64el r-cran-memoise all 2.0.1-1 [53.9 kB] 245s Get:117 http://ftpmaster.internal/ubuntu plucky/universe ppc64el r-cran-rappdirs ppc64el 0.3.3-1 [47.7 kB] 245s Get:118 http://ftpmaster.internal/ubuntu plucky/universe ppc64el r-cran-sass ppc64el 0.4.9+dfsg-1 [1034 kB] 245s Get:119 http://ftpmaster.internal/ubuntu plucky/universe ppc64el r-cran-bslib all 0.7.0+dfsg-1 [4255 kB] 245s Get:120 http://ftpmaster.internal/ubuntu plucky/universe ppc64el r-cran-commonmark ppc64el 1.9.2-2 [141 kB] 245s Get:121 http://ftpmaster.internal/ubuntu plucky/universe ppc64el r-cran-cpp11 all 0.5.0-1 [221 kB] 245s Get:122 http://ftpmaster.internal/ubuntu plucky/universe ppc64el r-cran-fontawesome all 0.5.2-1 [1300 kB] 246s Get:123 http://ftpmaster.internal/ubuntu plucky/universe ppc64el r-cran-xfun ppc64el 0.50+dfsg-1 [569 kB] 246s Get:124 http://ftpmaster.internal/ubuntu plucky/universe ppc64el r-cran-highr all 0.11+dfsg-1 [38.5 kB] 246s Get:125 http://ftpmaster.internal/ubuntu plucky/universe ppc64el r-cran-later ppc64el 1.4.1+dfsg-1 [153 kB] 246s Get:126 http://ftpmaster.internal/ubuntu plucky/universe ppc64el r-cran-promises ppc64el 1.3.2+dfsg-1 [297 kB] 246s Get:127 http://ftpmaster.internal/ubuntu plucky/universe ppc64el r-cran-httpuv ppc64el 1.6.15+dfsg-1 [521 kB] 246s Get:128 http://ftpmaster.internal/ubuntu plucky/universe ppc64el r-cran-lattice ppc64el 0.22-6-1 [1340 kB] 247s Get:129 http://ftpmaster.internal/ubuntu plucky/universe ppc64el r-cran-matrix ppc64el 1.7-2-1 [4536 kB] 248s Get:130 http://ftpmaster.internal/ubuntu plucky/universe ppc64el r-cran-pkgconfig all 2.0.3-2build1 [19.7 kB] 248s Get:131 http://ftpmaster.internal/ubuntu plucky/universe ppc64el r-cran-vctrs ppc64el 0.6.5-1 [1399 kB] 249s Get:132 http://ftpmaster.internal/ubuntu plucky/universe ppc64el r-cran-igraph ppc64el 2.1.3-1 [5481 kB] 250s Get:133 http://ftpmaster.internal/ubuntu plucky/universe ppc64el r-cran-yaml ppc64el 2.3.10-1 [123 kB] 250s Get:134 http://ftpmaster.internal/ubuntu plucky/main ppc64el libjs-mathjax all 2.7.9+dfsg-1 [5665 kB] 252s Get:135 http://ftpmaster.internal/ubuntu plucky/universe ppc64el r-cran-knitr all 1.49+dfsg-1 [859 kB] 252s Get:136 http://ftpmaster.internal/ubuntu plucky/universe ppc64el r-cran-ncdf4 ppc64el 1.23-1 [281 kB] 252s Get:137 http://ftpmaster.internal/ubuntu plucky/universe ppc64el r-cran-rcurl ppc64el 1.98-1.16+dfsg-1 [810 kB] 252s Get:138 http://ftpmaster.internal/ubuntu plucky/universe ppc64el r-cran-tinytex all 0.54-1 [147 kB] 252s Get:139 http://ftpmaster.internal/ubuntu plucky/universe ppc64el libjs-modernizr all 3.13.0-0.1 [101 kB] 253s Get:140 http://ftpmaster.internal/ubuntu plucky/universe ppc64el r-cran-xtable all 1:1.8-4-2 [689 kB] 253s Get:141 http://ftpmaster.internal/ubuntu plucky/universe ppc64el r-cran-sourcetools ppc64el 0.1.7-1-1 [52.4 kB] 253s Get:142 http://ftpmaster.internal/ubuntu plucky/universe ppc64el libjs-twitter-bootstrap-datepicker all 1.3.1+dfsg1-4.1 [28.5 kB] 253s Get:143 http://ftpmaster.internal/ubuntu plucky/universe ppc64el r-cran-shiny all 1.9.1+dfsg-1 [3111 kB] 254s Get:144 http://ftpmaster.internal/ubuntu plucky/universe ppc64el r-cran-rmarkdown all 2.29+dfsg-1 [1501 kB] 254s Get:145 http://ftpmaster.internal/ubuntu plucky/universe ppc64el r-cran-xml ppc64el 3.99-0.18-1 [1754 kB] 256s Fetched 217 MB in 36s (5972 kB/s) 256s Selecting previously unselected package libisl23:ppc64el. 256s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 80686 files and directories currently installed.) 256s Preparing to unpack .../000-libisl23_0.27-1_ppc64el.deb ... 256s Unpacking libisl23:ppc64el (0.27-1) ... 256s Selecting previously unselected package libmpc3:ppc64el. 256s Preparing to unpack .../001-libmpc3_1.3.1-1build2_ppc64el.deb ... 256s Unpacking libmpc3:ppc64el (1.3.1-1build2) ... 256s Selecting previously unselected package cpp-14-powerpc64le-linux-gnu. 256s Preparing to unpack .../002-cpp-14-powerpc64le-linux-gnu_14.2.0-13ubuntu1_ppc64el.deb ... 256s Unpacking cpp-14-powerpc64le-linux-gnu (14.2.0-13ubuntu1) ... 256s Selecting previously unselected package cpp-14. 256s Preparing to unpack .../003-cpp-14_14.2.0-13ubuntu1_ppc64el.deb ... 256s Unpacking cpp-14 (14.2.0-13ubuntu1) ... 256s Selecting previously unselected package cpp-powerpc64le-linux-gnu. 256s Preparing to unpack .../004-cpp-powerpc64le-linux-gnu_4%3a14.1.0-2ubuntu1_ppc64el.deb ... 256s Unpacking cpp-powerpc64le-linux-gnu (4:14.1.0-2ubuntu1) ... 256s Selecting previously unselected package cpp. 256s Preparing to unpack .../005-cpp_4%3a14.1.0-2ubuntu1_ppc64el.deb ... 256s Unpacking cpp (4:14.1.0-2ubuntu1) ... 256s Selecting previously unselected package libcc1-0:ppc64el. 256s Preparing to unpack .../006-libcc1-0_14.2.0-13ubuntu1_ppc64el.deb ... 256s Unpacking libcc1-0:ppc64el (14.2.0-13ubuntu1) ... 256s Selecting previously unselected package libitm1:ppc64el. 256s Preparing to unpack .../007-libitm1_14.2.0-13ubuntu1_ppc64el.deb ... 256s Unpacking libitm1:ppc64el (14.2.0-13ubuntu1) ... 256s Selecting previously unselected package libasan8:ppc64el. 256s Preparing to unpack .../008-libasan8_14.2.0-13ubuntu1_ppc64el.deb ... 256s Unpacking libasan8:ppc64el (14.2.0-13ubuntu1) ... 256s Selecting previously unselected package liblsan0:ppc64el. 256s Preparing to unpack .../009-liblsan0_14.2.0-13ubuntu1_ppc64el.deb ... 256s Unpacking liblsan0:ppc64el (14.2.0-13ubuntu1) ... 256s Selecting previously unselected package libtsan2:ppc64el. 256s Preparing to unpack .../010-libtsan2_14.2.0-13ubuntu1_ppc64el.deb ... 256s Unpacking libtsan2:ppc64el (14.2.0-13ubuntu1) ... 256s Selecting previously unselected package libubsan1:ppc64el. 256s Preparing to unpack .../011-libubsan1_14.2.0-13ubuntu1_ppc64el.deb ... 256s Unpacking libubsan1:ppc64el (14.2.0-13ubuntu1) ... 256s Selecting previously unselected package libquadmath0:ppc64el. 256s Preparing to unpack .../012-libquadmath0_14.2.0-13ubuntu1_ppc64el.deb ... 256s Unpacking libquadmath0:ppc64el (14.2.0-13ubuntu1) ... 256s Selecting previously unselected package libgcc-14-dev:ppc64el. 256s Preparing to unpack .../013-libgcc-14-dev_14.2.0-13ubuntu1_ppc64el.deb ... 256s Unpacking libgcc-14-dev:ppc64el (14.2.0-13ubuntu1) ... 256s Selecting previously unselected package gcc-14-powerpc64le-linux-gnu. 256s Preparing to unpack .../014-gcc-14-powerpc64le-linux-gnu_14.2.0-13ubuntu1_ppc64el.deb ... 256s Unpacking gcc-14-powerpc64le-linux-gnu (14.2.0-13ubuntu1) ... 257s Selecting previously unselected package gcc-14. 257s Preparing to unpack .../015-gcc-14_14.2.0-13ubuntu1_ppc64el.deb ... 257s Unpacking gcc-14 (14.2.0-13ubuntu1) ... 257s Selecting previously unselected package gcc-powerpc64le-linux-gnu. 257s Preparing to unpack .../016-gcc-powerpc64le-linux-gnu_4%3a14.1.0-2ubuntu1_ppc64el.deb ... 257s Unpacking gcc-powerpc64le-linux-gnu (4:14.1.0-2ubuntu1) ... 257s Selecting previously unselected package gcc. 257s Preparing to unpack .../017-gcc_4%3a14.1.0-2ubuntu1_ppc64el.deb ... 257s Unpacking gcc (4:14.1.0-2ubuntu1) ... 257s Selecting previously unselected package libstdc++-14-dev:ppc64el. 257s Preparing to unpack .../018-libstdc++-14-dev_14.2.0-13ubuntu1_ppc64el.deb ... 257s Unpacking libstdc++-14-dev:ppc64el (14.2.0-13ubuntu1) ... 257s Selecting previously unselected package g++-14-powerpc64le-linux-gnu. 257s Preparing to unpack .../019-g++-14-powerpc64le-linux-gnu_14.2.0-13ubuntu1_ppc64el.deb ... 257s Unpacking g++-14-powerpc64le-linux-gnu (14.2.0-13ubuntu1) ... 257s Selecting previously unselected package g++-14. 257s Preparing to unpack .../020-g++-14_14.2.0-13ubuntu1_ppc64el.deb ... 257s Unpacking g++-14 (14.2.0-13ubuntu1) ... 257s Selecting previously unselected package g++-powerpc64le-linux-gnu. 257s Preparing to unpack .../021-g++-powerpc64le-linux-gnu_4%3a14.1.0-2ubuntu1_ppc64el.deb ... 257s Unpacking g++-powerpc64le-linux-gnu (4:14.1.0-2ubuntu1) ... 257s Selecting previously unselected package g++. 257s Preparing to unpack .../022-g++_4%3a14.1.0-2ubuntu1_ppc64el.deb ... 257s Unpacking g++ (4:14.1.0-2ubuntu1) ... 257s Selecting previously unselected package build-essential. 257s Preparing to unpack .../023-build-essential_12.10ubuntu1_ppc64el.deb ... 257s Unpacking build-essential (12.10ubuntu1) ... 257s Selecting previously unselected package dctrl-tools. 257s Preparing to unpack .../024-dctrl-tools_2.24-3build3_ppc64el.deb ... 257s Unpacking dctrl-tools (2.24-3build3) ... 257s Selecting previously unselected package fonts-font-awesome. 257s Preparing to unpack .../025-fonts-font-awesome_5.0.10+really4.7.0~dfsg-4.1_all.deb ... 257s Unpacking fonts-font-awesome (5.0.10+really4.7.0~dfsg-4.1) ... 257s Selecting previously unselected package fonts-glyphicons-halflings. 257s Preparing to unpack .../026-fonts-glyphicons-halflings_1.009~3.4.1+dfsg-3_all.deb ... 257s Unpacking fonts-glyphicons-halflings (1.009~3.4.1+dfsg-3) ... 257s Selecting previously unselected package fonts-mathjax. 257s Preparing to unpack .../027-fonts-mathjax_2.7.9+dfsg-1_all.deb ... 257s Unpacking fonts-mathjax (2.7.9+dfsg-1) ... 257s Selecting previously unselected package libgfortran-14-dev:ppc64el. 257s Preparing to unpack .../028-libgfortran-14-dev_14.2.0-13ubuntu1_ppc64el.deb ... 257s Unpacking libgfortran-14-dev:ppc64el (14.2.0-13ubuntu1) ... 257s Selecting previously unselected package gfortran-14-powerpc64le-linux-gnu. 257s Preparing to unpack .../029-gfortran-14-powerpc64le-linux-gnu_14.2.0-13ubuntu1_ppc64el.deb ... 257s Unpacking gfortran-14-powerpc64le-linux-gnu (14.2.0-13ubuntu1) ... 258s Selecting previously unselected package gfortran-14. 258s Preparing to unpack .../030-gfortran-14_14.2.0-13ubuntu1_ppc64el.deb ... 258s Unpacking gfortran-14 (14.2.0-13ubuntu1) ... 258s Selecting previously unselected package gfortran-powerpc64le-linux-gnu. 258s Preparing to unpack .../031-gfortran-powerpc64le-linux-gnu_4%3a14.1.0-2ubuntu1_ppc64el.deb ... 258s Unpacking gfortran-powerpc64le-linux-gnu (4:14.1.0-2ubuntu1) ... 258s Selecting previously unselected package gfortran. 258s Preparing to unpack .../032-gfortran_4%3a14.1.0-2ubuntu1_ppc64el.deb ... 258s Unpacking gfortran (4:14.1.0-2ubuntu1) ... 258s Selecting previously unselected package icu-devtools. 258s Preparing to unpack .../033-icu-devtools_76.1-1ubuntu2_ppc64el.deb ... 258s Unpacking icu-devtools (76.1-1ubuntu2) ... 258s Selecting previously unselected package javascript-common. 258s Preparing to unpack .../034-javascript-common_11+nmu1_all.deb ... 258s Unpacking javascript-common (11+nmu1) ... 258s Selecting previously unselected package libaec0:ppc64el. 258s Preparing to unpack .../035-libaec0_1.1.3-1_ppc64el.deb ... 258s Unpacking libaec0:ppc64el (1.1.3-1) ... 258s Selecting previously unselected package libsuitesparseconfig7:ppc64el. 258s Preparing to unpack .../036-libsuitesparseconfig7_1%3a7.8.3+dfsg-2_ppc64el.deb ... 258s Unpacking libsuitesparseconfig7:ppc64el (1:7.8.3+dfsg-2) ... 258s Selecting previously unselected package libamd3:ppc64el. 258s Preparing to unpack .../037-libamd3_1%3a7.8.3+dfsg-2_ppc64el.deb ... 258s Unpacking libamd3:ppc64el (1:7.8.3+dfsg-2) ... 258s Selecting previously unselected package libblas-dev:ppc64el. 258s Preparing to unpack .../038-libblas-dev_3.12.0-4_ppc64el.deb ... 258s Unpacking libblas-dev:ppc64el (3.12.0-4) ... 258s Selecting previously unselected package libboost1.83-dev:ppc64el. 258s Preparing to unpack .../039-libboost1.83-dev_1.83.0-4ubuntu2_ppc64el.deb ... 258s Unpacking libboost1.83-dev:ppc64el (1.83.0-4ubuntu2) ... 260s Selecting previously unselected package libboost-dev:ppc64el. 260s Preparing to unpack .../040-libboost-dev_1.83.0.2ubuntu1_ppc64el.deb ... 260s Unpacking libboost-dev:ppc64el (1.83.0.2ubuntu1) ... 260s Selecting previously unselected package libbz2-dev:ppc64el. 260s Preparing to unpack .../041-libbz2-dev_1.0.8-6_ppc64el.deb ... 260s Unpacking libbz2-dev:ppc64el (1.0.8-6) ... 260s Selecting previously unselected package libcolamd3:ppc64el. 260s Preparing to unpack .../042-libcolamd3_1%3a7.8.3+dfsg-2_ppc64el.deb ... 260s Unpacking libcolamd3:ppc64el (1:7.8.3+dfsg-2) ... 260s Selecting previously unselected package libdeflate-dev:ppc64el. 260s Preparing to unpack .../043-libdeflate-dev_1.23-1_ppc64el.deb ... 260s Unpacking libdeflate-dev:ppc64el (1.23-1) ... 260s Selecting previously unselected package libltdl7:ppc64el. 260s Preparing to unpack .../044-libltdl7_2.5.4-2_ppc64el.deb ... 260s Unpacking libltdl7:ppc64el (2.5.4-2) ... 260s Selecting previously unselected package libglpk40:ppc64el. 260s Preparing to unpack .../045-libglpk40_5.0-1build2_ppc64el.deb ... 260s Unpacking libglpk40:ppc64el (5.0-1build2) ... 260s Selecting previously unselected package libsz2:ppc64el. 260s Preparing to unpack .../046-libsz2_1.1.3-1_ppc64el.deb ... 260s Unpacking libsz2:ppc64el (1.1.3-1) ... 260s Selecting previously unselected package libhdf5-310:ppc64el. 260s Preparing to unpack .../047-libhdf5-310_1.14.5+repack-3_ppc64el.deb ... 260s Unpacking libhdf5-310:ppc64el (1.14.5+repack-3) ... 260s Selecting previously unselected package libhdf5-hl-310:ppc64el. 260s Preparing to unpack .../048-libhdf5-hl-310_1.14.5+repack-3_ppc64el.deb ... 260s Unpacking libhdf5-hl-310:ppc64el (1.14.5+repack-3) ... 260s Selecting previously unselected package libicu-dev:ppc64el. 260s Preparing to unpack .../049-libicu-dev_76.1-1ubuntu2_ppc64el.deb ... 260s Unpacking libicu-dev:ppc64el (76.1-1ubuntu2) ... 260s Selecting previously unselected package libjpeg-turbo8-dev:ppc64el. 260s Preparing to unpack .../050-libjpeg-turbo8-dev_2.1.5-3ubuntu2_ppc64el.deb ... 260s Unpacking libjpeg-turbo8-dev:ppc64el (2.1.5-3ubuntu2) ... 261s Selecting previously unselected package libjpeg8-dev:ppc64el. 261s Preparing to unpack .../051-libjpeg8-dev_8c-2ubuntu11_ppc64el.deb ... 261s Unpacking libjpeg8-dev:ppc64el (8c-2ubuntu11) ... 261s Selecting previously unselected package libjpeg-dev:ppc64el. 261s Preparing to unpack .../052-libjpeg-dev_8c-2ubuntu11_ppc64el.deb ... 261s Unpacking libjpeg-dev:ppc64el (8c-2ubuntu11) ... 261s Selecting previously unselected package libjs-bootstrap. 261s Preparing to unpack .../053-libjs-bootstrap_3.4.1+dfsg-3_all.deb ... 261s Unpacking libjs-bootstrap (3.4.1+dfsg-3) ... 261s Selecting previously unselected package libjs-popper.js. 261s Preparing to unpack .../054-libjs-popper.js_1.16.1+ds-6_all.deb ... 261s Unpacking libjs-popper.js (1.16.1+ds-6) ... 261s Selecting previously unselected package libjs-bootstrap4. 261s Preparing to unpack .../055-libjs-bootstrap4_4.6.1+dfsg1-4_all.deb ... 261s Unpacking libjs-bootstrap4 (4.6.1+dfsg1-4) ... 261s Selecting previously unselected package libjs-d3. 261s Preparing to unpack .../056-libjs-d3_3.5.17-4_all.deb ... 261s Unpacking libjs-d3 (3.5.17-4) ... 261s Selecting previously unselected package libjs-es5-shim. 261s Preparing to unpack .../057-libjs-es5-shim_4.6.7-2_all.deb ... 261s Unpacking libjs-es5-shim (4.6.7-2) ... 261s Selecting previously unselected package libjs-highlight.js. 261s Preparing to unpack .../058-libjs-highlight.js_9.18.5+dfsg1-2_all.deb ... 261s Unpacking libjs-highlight.js (9.18.5+dfsg1-2) ... 261s Selecting previously unselected package libjs-jquery. 261s Preparing to unpack .../059-libjs-jquery_3.6.1+dfsg+~3.5.14-1_all.deb ... 261s Unpacking libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... 261s Selecting previously unselected package libjs-jquery-datatables. 261s Preparing to unpack .../060-libjs-jquery-datatables_1.11.5+dfsg-2_all.deb ... 261s Unpacking libjs-jquery-datatables (1.11.5+dfsg-2) ... 261s Selecting previously unselected package libjs-sifter.js. 261s Preparing to unpack .../061-libjs-sifter.js_0.6.0+dfsg-3_all.deb ... 261s Unpacking libjs-sifter.js (0.6.0+dfsg-3) ... 261s Selecting previously unselected package libjs-microplugin.js. 261s Preparing to unpack .../062-libjs-microplugin.js_0.0.3+dfsg-1.1_all.deb ... 261s Unpacking libjs-microplugin.js (0.0.3+dfsg-1.1) ... 261s Selecting previously unselected package libjs-jquery-selectize.js. 261s Preparing to unpack .../063-libjs-jquery-selectize.js_0.12.6+dfsg-1.1_all.deb ... 261s Unpacking libjs-jquery-selectize.js (0.12.6+dfsg-1.1) ... 261s Selecting previously unselected package libjs-jquery-ui. 261s Preparing to unpack .../064-libjs-jquery-ui_1.13.2+dfsg-1_all.deb ... 261s Unpacking libjs-jquery-ui (1.13.2+dfsg-1) ... 261s Selecting previously unselected package libjs-json. 261s Preparing to unpack .../065-libjs-json_0~20221030+~1.0.8-1_all.deb ... 261s Unpacking libjs-json (0~20221030+~1.0.8-1) ... 261s Selecting previously unselected package libjs-prettify. 261s Preparing to unpack .../066-libjs-prettify_2015.12.04+dfsg-1.1_all.deb ... 261s Unpacking libjs-prettify (2015.12.04+dfsg-1.1) ... 261s Selecting previously unselected package liblapack-dev:ppc64el. 261s Preparing to unpack .../067-liblapack-dev_3.12.0-4_ppc64el.deb ... 261s Unpacking liblapack-dev:ppc64el (3.12.0-4) ... 261s Selecting previously unselected package liblua5.4-0:ppc64el. 261s Preparing to unpack .../068-liblua5.4-0_5.4.7-1_ppc64el.deb ... 261s Unpacking liblua5.4-0:ppc64el (5.4.7-1) ... 261s Selecting previously unselected package libncurses-dev:ppc64el. 261s Preparing to unpack .../069-libncurses-dev_6.5-2_ppc64el.deb ... 261s Unpacking libncurses-dev:ppc64el (6.5-2) ... 261s Selecting previously unselected package libnetcdf19t64:ppc64el. 261s Preparing to unpack .../070-libnetcdf19t64_1%3a4.9.2-6ubuntu2_ppc64el.deb ... 261s Unpacking libnetcdf19t64:ppc64el (1:4.9.2-6ubuntu2) ... 261s Selecting previously unselected package libpcre2-16-0:ppc64el. 261s Preparing to unpack .../071-libpcre2-16-0_10.42-4ubuntu3_ppc64el.deb ... 261s Unpacking libpcre2-16-0:ppc64el (10.42-4ubuntu3) ... 261s Selecting previously unselected package libpcre2-32-0:ppc64el. 261s Preparing to unpack .../072-libpcre2-32-0_10.42-4ubuntu3_ppc64el.deb ... 261s Unpacking libpcre2-32-0:ppc64el (10.42-4ubuntu3) ... 261s Selecting previously unselected package libpcre2-posix3:ppc64el. 261s Preparing to unpack .../073-libpcre2-posix3_10.42-4ubuntu3_ppc64el.deb ... 261s Unpacking libpcre2-posix3:ppc64el (10.42-4ubuntu3) ... 261s Selecting previously unselected package libpcre2-dev:ppc64el. 261s Preparing to unpack .../074-libpcre2-dev_10.42-4ubuntu3_ppc64el.deb ... 261s Unpacking libpcre2-dev:ppc64el (10.42-4ubuntu3) ... 261s Selecting previously unselected package libpkgconf3:ppc64el. 261s Preparing to unpack .../075-libpkgconf3_1.8.1-4_ppc64el.deb ... 261s Unpacking libpkgconf3:ppc64el (1.8.1-4) ... 261s Selecting previously unselected package zlib1g-dev:ppc64el. 261s Preparing to unpack .../076-zlib1g-dev_1%3a1.3.dfsg+really1.3.1-1ubuntu1_ppc64el.deb ... 261s Unpacking zlib1g-dev:ppc64el (1:1.3.dfsg+really1.3.1-1ubuntu1) ... 261s Selecting previously unselected package libpng-dev:ppc64el. 261s Preparing to unpack .../077-libpng-dev_1.6.44-3_ppc64el.deb ... 261s Unpacking libpng-dev:ppc64el (1.6.44-3) ... 261s Selecting previously unselected package libreadline-dev:ppc64el. 261s Preparing to unpack .../078-libreadline-dev_8.2-6_ppc64el.deb ... 261s Unpacking libreadline-dev:ppc64el (8.2-6) ... 261s Selecting previously unselected package node-bootstrap-sass. 262s Preparing to unpack .../079-node-bootstrap-sass_3.4.3-2_all.deb ... 262s Unpacking node-bootstrap-sass (3.4.3-2) ... 262s Selecting previously unselected package node-html5shiv. 262s Preparing to unpack .../080-node-html5shiv_3.7.3+dfsg-5_all.deb ... 262s Unpacking node-html5shiv (3.7.3+dfsg-5) ... 262s Selecting previously unselected package node-normalize.css. 262s Preparing to unpack .../081-node-normalize.css_8.0.1-5_all.deb ... 262s Unpacking node-normalize.css (8.0.1-5) ... 262s Selecting previously unselected package pandoc-data. 262s Preparing to unpack .../082-pandoc-data_3.1.11.1-3build1_all.deb ... 262s Unpacking pandoc-data (3.1.11.1-3build1) ... 262s Selecting previously unselected package pandoc. 262s Preparing to unpack .../083-pandoc_3.1.11.1+ds-2_ppc64el.deb ... 262s Unpacking pandoc (3.1.11.1+ds-2) ... 263s Selecting previously unselected package liblzma-dev:ppc64el. 263s Preparing to unpack .../084-liblzma-dev_5.6.3-1_ppc64el.deb ... 263s Unpacking liblzma-dev:ppc64el (5.6.3-1) ... 263s Selecting previously unselected package pkgconf-bin. 263s Preparing to unpack .../085-pkgconf-bin_1.8.1-4_ppc64el.deb ... 263s Unpacking pkgconf-bin (1.8.1-4) ... 263s Selecting previously unselected package pkgconf:ppc64el. 263s Preparing to unpack .../086-pkgconf_1.8.1-4_ppc64el.deb ... 263s Unpacking pkgconf:ppc64el (1.8.1-4) ... 263s Selecting previously unselected package libtirpc-dev:ppc64el. 263s Preparing to unpack .../087-libtirpc-dev_1.3.4+ds-1.3_ppc64el.deb ... 263s Unpacking libtirpc-dev:ppc64el (1.3.4+ds-1.3) ... 263s Selecting previously unselected package r-base-dev. 263s Preparing to unpack .../088-r-base-dev_4.4.2-1build1_all.deb ... 263s Unpacking r-base-dev (4.4.2-1build1) ... 263s Selecting previously unselected package pkg-r-autopkgtest. 263s Preparing to unpack .../089-pkg-r-autopkgtest_20231212ubuntu1_all.deb ... 263s Unpacking pkg-r-autopkgtest (20231212ubuntu1) ... 263s Selecting previously unselected package r-bioc-biocgenerics. 263s Preparing to unpack .../090-r-bioc-biocgenerics_0.52.0-2_all.deb ... 263s Unpacking r-bioc-biocgenerics (0.52.0-2) ... 263s Selecting previously unselected package r-bioc-s4vectors. 263s Preparing to unpack .../091-r-bioc-s4vectors_0.44.0+dfsg-2_ppc64el.deb ... 263s Unpacking r-bioc-s4vectors (0.44.0+dfsg-2) ... 263s Selecting previously unselected package r-bioc-iranges. 263s Preparing to unpack .../092-r-bioc-iranges_2.40.1-2_ppc64el.deb ... 263s Unpacking r-bioc-iranges (2.40.1-2) ... 263s Selecting previously unselected package r-bioc-zlibbioc. 263s Preparing to unpack .../093-r-bioc-zlibbioc_1.52.0+dfsg-2_all.deb ... 263s Unpacking r-bioc-zlibbioc (1.52.0+dfsg-2) ... 263s Selecting previously unselected package r-bioc-xvector. 263s Preparing to unpack .../094-r-bioc-xvector_0.46.0-2_ppc64el.deb ... 263s Unpacking r-bioc-xvector (0.46.0-2) ... 263s Selecting previously unselected package r-cran-curl. 263s Preparing to unpack .../095-r-cran-curl_6.1.0+dfsg-1_ppc64el.deb ... 263s Unpacking r-cran-curl (6.1.0+dfsg-1) ... 263s Selecting previously unselected package r-cran-mime. 263s Preparing to unpack .../096-r-cran-mime_0.12-2_ppc64el.deb ... 263s Unpacking r-cran-mime (0.12-2) ... 263s Selecting previously unselected package r-cran-sys. 263s Preparing to unpack .../097-r-cran-sys_3.4.3-1_ppc64el.deb ... 263s Unpacking r-cran-sys (3.4.3-1) ... 263s Selecting previously unselected package r-cran-askpass. 263s Preparing to unpack .../098-r-cran-askpass_1.2.1-1_ppc64el.deb ... 263s Unpacking r-cran-askpass (1.2.1-1) ... 263s Selecting previously unselected package r-cran-openssl. 263s Preparing to unpack .../099-r-cran-openssl_2.2.0+dfsg-1_ppc64el.deb ... 263s Unpacking r-cran-openssl (2.2.0+dfsg-1) ... 263s Selecting previously unselected package r-cran-httr. 263s Preparing to unpack .../100-r-cran-httr_1.4.7+dfsg-1_all.deb ... 263s Unpacking r-cran-httr (1.4.7+dfsg-1) ... 263s Selecting previously unselected package r-bioc-ucsc.utils. 263s Preparing to unpack .../101-r-bioc-ucsc.utils_1.2.0+ds-2_all.deb ... 263s Unpacking r-bioc-ucsc.utils (1.2.0+ds-2) ... 263s Selecting previously unselected package r-bioc-genomeinfodbdata. 263s Preparing to unpack .../102-r-bioc-genomeinfodbdata_1.2.13-2_all.deb ... 263s Unpacking r-bioc-genomeinfodbdata (1.2.13-2) ... 263s Selecting previously unselected package r-bioc-genomeinfodb. 263s Preparing to unpack .../103-r-bioc-genomeinfodb_1.42.1+dfsg-2_all.deb ... 263s Unpacking r-bioc-genomeinfodb (1.42.1+dfsg-2) ... 264s Selecting previously unselected package r-bioc-biostrings. 264s Preparing to unpack .../104-r-bioc-biostrings_2.74.1+dfsg-2_ppc64el.deb ... 264s Unpacking r-bioc-biostrings (2.74.1+dfsg-2) ... 264s Selecting previously unselected package r-cran-base64enc. 264s Preparing to unpack .../105-r-cran-base64enc_0.1-3-3_ppc64el.deb ... 264s Unpacking r-cran-base64enc (0.1-3-3) ... 264s Selecting previously unselected package r-cran-bh. 264s Preparing to unpack .../106-r-cran-bh_1.84.0-1_all.deb ... 264s Unpacking r-cran-bh (1.84.0-1) ... 264s Selecting previously unselected package r-cran-bigmemory.sri. 264s Preparing to unpack .../107-r-cran-bigmemory.sri_0.1.8-1_all.deb ... 264s Unpacking r-cran-bigmemory.sri (0.1.8-1) ... 264s Selecting previously unselected package r-cran-uuid. 264s Preparing to unpack .../108-r-cran-uuid_1.2-1-1_ppc64el.deb ... 264s Unpacking r-cran-uuid (1.2-1-1) ... 264s Selecting previously unselected package r-cran-bigmemory. 264s Preparing to unpack .../109-r-cran-bigmemory_4.6.4-1_ppc64el.deb ... 264s Unpacking r-cran-bigmemory (4.6.4-1) ... 264s Selecting previously unselected package r-cran-bitops. 264s Preparing to unpack .../110-r-cran-bitops_1.0-9-1_ppc64el.deb ... 264s Unpacking r-cran-bitops (1.0-9-1) ... 264s Selecting previously unselected package r-cran-fastmap. 264s Preparing to unpack .../111-r-cran-fastmap_1.2.0-1_ppc64el.deb ... 264s Unpacking r-cran-fastmap (1.2.0-1) ... 264s Selecting previously unselected package r-cran-cachem. 264s Preparing to unpack .../112-r-cran-cachem_1.1.0-1_ppc64el.deb ... 264s Unpacking r-cran-cachem (1.1.0-1) ... 264s Selecting previously unselected package r-cran-htmltools. 264s Preparing to unpack .../113-r-cran-htmltools_0.5.8.1-1_ppc64el.deb ... 264s Unpacking r-cran-htmltools (0.5.8.1-1) ... 264s Selecting previously unselected package r-cran-jquerylib. 264s Preparing to unpack .../114-r-cran-jquerylib_0.1.4+dfsg-4_all.deb ... 264s Unpacking r-cran-jquerylib (0.1.4+dfsg-4) ... 264s Selecting previously unselected package r-cran-memoise. 264s Preparing to unpack .../115-r-cran-memoise_2.0.1-1_all.deb ... 264s Unpacking r-cran-memoise (2.0.1-1) ... 264s Selecting previously unselected package r-cran-rappdirs. 264s Preparing to unpack .../116-r-cran-rappdirs_0.3.3-1_ppc64el.deb ... 264s Unpacking r-cran-rappdirs (0.3.3-1) ... 264s Selecting previously unselected package r-cran-sass. 264s Preparing to unpack .../117-r-cran-sass_0.4.9+dfsg-1_ppc64el.deb ... 264s Unpacking r-cran-sass (0.4.9+dfsg-1) ... 264s Selecting previously unselected package r-cran-bslib. 264s Preparing to unpack .../118-r-cran-bslib_0.7.0+dfsg-1_all.deb ... 264s Unpacking r-cran-bslib (0.7.0+dfsg-1) ... 264s Selecting previously unselected package r-cran-commonmark. 264s Preparing to unpack .../119-r-cran-commonmark_1.9.2-2_ppc64el.deb ... 264s Unpacking r-cran-commonmark (1.9.2-2) ... 264s Selecting previously unselected package r-cran-cpp11. 264s Preparing to unpack .../120-r-cran-cpp11_0.5.0-1_all.deb ... 264s Unpacking r-cran-cpp11 (0.5.0-1) ... 264s Selecting previously unselected package r-cran-fontawesome. 264s Preparing to unpack .../121-r-cran-fontawesome_0.5.2-1_all.deb ... 264s Unpacking r-cran-fontawesome (0.5.2-1) ... 264s Selecting previously unselected package r-cran-xfun. 264s Preparing to unpack .../122-r-cran-xfun_0.50+dfsg-1_ppc64el.deb ... 264s Unpacking r-cran-xfun (0.50+dfsg-1) ... 264s Selecting previously unselected package r-cran-highr. 264s Preparing to unpack .../123-r-cran-highr_0.11+dfsg-1_all.deb ... 264s Unpacking r-cran-highr (0.11+dfsg-1) ... 264s Selecting previously unselected package r-cran-later. 264s Preparing to unpack .../124-r-cran-later_1.4.1+dfsg-1_ppc64el.deb ... 264s Unpacking r-cran-later (1.4.1+dfsg-1) ... 264s Selecting previously unselected package r-cran-promises. 264s Preparing to unpack .../125-r-cran-promises_1.3.2+dfsg-1_ppc64el.deb ... 264s Unpacking r-cran-promises (1.3.2+dfsg-1) ... 264s Selecting previously unselected package r-cran-httpuv. 264s Preparing to unpack .../126-r-cran-httpuv_1.6.15+dfsg-1_ppc64el.deb ... 264s Unpacking r-cran-httpuv (1.6.15+dfsg-1) ... 264s Selecting previously unselected package r-cran-lattice. 264s Preparing to unpack .../127-r-cran-lattice_0.22-6-1_ppc64el.deb ... 264s Unpacking r-cran-lattice (0.22-6-1) ... 264s Selecting previously unselected package r-cran-matrix. 264s Preparing to unpack .../128-r-cran-matrix_1.7-2-1_ppc64el.deb ... 264s Unpacking r-cran-matrix (1.7-2-1) ... 264s Selecting previously unselected package r-cran-pkgconfig. 264s Preparing to unpack .../129-r-cran-pkgconfig_2.0.3-2build1_all.deb ... 264s Unpacking r-cran-pkgconfig (2.0.3-2build1) ... 264s Selecting previously unselected package r-cran-vctrs. 264s Preparing to unpack .../130-r-cran-vctrs_0.6.5-1_ppc64el.deb ... 264s Unpacking r-cran-vctrs (0.6.5-1) ... 264s Selecting previously unselected package r-cran-igraph. 264s Preparing to unpack .../131-r-cran-igraph_2.1.3-1_ppc64el.deb ... 264s Unpacking r-cran-igraph (2.1.3-1) ... 264s Selecting previously unselected package r-cran-yaml. 264s Preparing to unpack .../132-r-cran-yaml_2.3.10-1_ppc64el.deb ... 264s Unpacking r-cran-yaml (2.3.10-1) ... 264s Selecting previously unselected package libjs-mathjax. 264s Preparing to unpack .../133-libjs-mathjax_2.7.9+dfsg-1_all.deb ... 264s Unpacking libjs-mathjax (2.7.9+dfsg-1) ... 265s Selecting previously unselected package r-cran-knitr. 265s Preparing to unpack .../134-r-cran-knitr_1.49+dfsg-1_all.deb ... 265s Unpacking r-cran-knitr (1.49+dfsg-1) ... 265s Selecting previously unselected package r-cran-ncdf4. 265s Preparing to unpack .../135-r-cran-ncdf4_1.23-1_ppc64el.deb ... 265s Unpacking r-cran-ncdf4 (1.23-1) ... 265s Selecting previously unselected package r-cran-rcurl. 265s Preparing to unpack .../136-r-cran-rcurl_1.98-1.16+dfsg-1_ppc64el.deb ... 265s Unpacking r-cran-rcurl (1.98-1.16+dfsg-1) ... 265s Selecting previously unselected package r-cran-tinytex. 265s Preparing to unpack .../137-r-cran-tinytex_0.54-1_all.deb ... 265s Unpacking r-cran-tinytex (0.54-1) ... 265s Selecting previously unselected package libjs-modernizr. 265s Preparing to unpack .../138-libjs-modernizr_3.13.0-0.1_all.deb ... 265s Unpacking libjs-modernizr (3.13.0-0.1) ... 265s Selecting previously unselected package r-cran-xtable. 265s Preparing to unpack .../139-r-cran-xtable_1%3a1.8-4-2_all.deb ... 265s Unpacking r-cran-xtable (1:1.8-4-2) ... 265s Selecting previously unselected package r-cran-sourcetools. 265s Preparing to unpack .../140-r-cran-sourcetools_0.1.7-1-1_ppc64el.deb ... 265s Unpacking r-cran-sourcetools (0.1.7-1-1) ... 265s Selecting previously unselected package libjs-twitter-bootstrap-datepicker. 265s Preparing to unpack .../141-libjs-twitter-bootstrap-datepicker_1.3.1+dfsg1-4.1_all.deb ... 265s Unpacking libjs-twitter-bootstrap-datepicker (1.3.1+dfsg1-4.1) ... 265s Selecting previously unselected package r-cran-shiny. 265s Preparing to unpack .../142-r-cran-shiny_1.9.1+dfsg-1_all.deb ... 265s Unpacking r-cran-shiny (1.9.1+dfsg-1) ... 266s Selecting previously unselected package r-cran-rmarkdown. 266s Preparing to unpack .../143-r-cran-rmarkdown_2.29+dfsg-1_all.deb ... 266s Unpacking r-cran-rmarkdown (2.29+dfsg-1) ... 266s Selecting previously unselected package r-cran-xml. 266s Preparing to unpack .../144-r-cran-xml_3.99-0.18-1_ppc64el.deb ... 266s Unpacking r-cran-xml (3.99-0.18-1) ... 266s Setting up libjs-json (0~20221030+~1.0.8-1) ... 266s Setting up javascript-common (11+nmu1) ... 266s Setting up r-cran-curl (6.1.0+dfsg-1) ... 266s Setting up libjpeg-turbo8-dev:ppc64el (2.1.5-3ubuntu2) ... 266s Setting up r-cran-bigmemory.sri (0.1.8-1) ... 266s Setting up libncurses-dev:ppc64el (6.5-2) ... 266s Setting up r-bioc-biocgenerics (0.52.0-2) ... 266s Setting up fonts-mathjax (2.7.9+dfsg-1) ... 266s Setting up libjs-mathjax (2.7.9+dfsg-1) ... 266s Setting up libjs-popper.js (1.16.1+ds-6) ... 266s Setting up r-cran-uuid (1.2-1-1) ... 266s Setting up r-cran-xfun (0.50+dfsg-1) ... 266s Setting up r-cran-sys (3.4.3-1) ... 266s Setting up libjs-sifter.js (0.6.0+dfsg-3) ... 266s Setting up r-cran-mime (0.12-2) ... 266s Setting up fonts-glyphicons-halflings (1.009~3.4.1+dfsg-3) ... 266s Setting up r-cran-base64enc (0.1-3-3) ... 266s Setting up r-cran-yaml (2.3.10-1) ... 266s Setting up node-html5shiv (3.7.3+dfsg-5) ... 266s Setting up libjs-microplugin.js (0.0.3+dfsg-1.1) ... 266s Setting up libreadline-dev:ppc64el (8.2-6) ... 266s Setting up libjs-modernizr (3.13.0-0.1) ... 266s Setting up r-cran-xtable (1:1.8-4-2) ... 266s Setting up r-cran-bitops (1.0-9-1) ... 266s Setting up libpcre2-16-0:ppc64el (10.42-4ubuntu3) ... 266s Setting up libaec0:ppc64el (1.1.3-1) ... 266s Setting up libjs-es5-shim (4.6.7-2) ... 266s Setting up r-cran-askpass (1.2.1-1) ... 266s Setting up r-cran-fastmap (1.2.0-1) ... 266s Setting up r-cran-pkgconfig (2.0.3-2build1) ... 266s Setting up libpcre2-32-0:ppc64el (10.42-4ubuntu3) ... 266s Setting up libtirpc-dev:ppc64el (1.3.4+ds-1.3) ... 266s Setting up libpkgconf3:ppc64el (1.8.1-4) ... 266s Setting up r-cran-cpp11 (0.5.0-1) ... 266s Setting up r-bioc-s4vectors (0.44.0+dfsg-2) ... 266s Setting up libquadmath0:ppc64el (14.2.0-13ubuntu1) ... 266s Setting up libjs-d3 (3.5.17-4) ... 266s Setting up libmpc3:ppc64el (1.3.1-1build2) ... 266s Setting up icu-devtools (76.1-1ubuntu2) ... 266s Setting up r-cran-sourcetools (0.1.7-1-1) ... 266s Setting up pkgconf-bin (1.8.1-4) ... 266s Setting up r-cran-later (1.4.1+dfsg-1) ... 266s Setting up r-cran-lattice (0.22-6-1) ... 266s Setting up libltdl7:ppc64el (2.5.4-2) ... 266s Setting up r-cran-htmltools (0.5.8.1-1) ... 266s Setting up r-cran-tinytex (0.54-1) ... 266s Setting up liblzma-dev:ppc64el (5.6.3-1) ... 266s Setting up libubsan1:ppc64el (14.2.0-13ubuntu1) ... 266s Setting up zlib1g-dev:ppc64el (1:1.3.dfsg+really1.3.1-1ubuntu1) ... 266s Setting up r-cran-xml (3.99-0.18-1) ... 266s Setting up libpcre2-posix3:ppc64el (10.42-4ubuntu3) ... 266s Setting up libjs-highlight.js (9.18.5+dfsg1-2) ... 266s Setting up libasan8:ppc64el (14.2.0-13ubuntu1) ... 266s Setting up r-cran-cachem (1.1.0-1) ... 266s Setting up libsuitesparseconfig7:ppc64el (1:7.8.3+dfsg-2) ... 266s Setting up liblua5.4-0:ppc64el (5.4.7-1) ... 266s Setting up node-bootstrap-sass (3.4.3-2) ... 266s Setting up libjs-prettify (2015.12.04+dfsg-1.1) ... 266s Setting up r-bioc-iranges (2.40.1-2) ... 266s Setting up libjs-bootstrap4 (4.6.1+dfsg1-4) ... 266s Setting up r-cran-commonmark (1.9.2-2) ... 266s Setting up pandoc-data (3.1.11.1-3build1) ... 266s Setting up libtsan2:ppc64el (14.2.0-13ubuntu1) ... 266s Setting up libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... 266s Setting up libjpeg8-dev:ppc64el (8c-2ubuntu11) ... 266s Setting up libisl23:ppc64el (0.27-1) ... 266s Setting up r-cran-rcurl (1.98-1.16+dfsg-1) ... 266s Setting up libdeflate-dev:ppc64el (1.23-1) ... 266s Setting up node-normalize.css (8.0.1-5) ... 266s Setting up libicu-dev:ppc64el (76.1-1ubuntu2) ... 266s Setting up fonts-font-awesome (5.0.10+really4.7.0~dfsg-4.1) ... 266s Setting up libcc1-0:ppc64el (14.2.0-13ubuntu1) ... 266s Setting up r-cran-vctrs (0.6.5-1) ... 266s Setting up r-cran-rappdirs (0.3.3-1) ... 266s Setting up liblsan0:ppc64el (14.2.0-13ubuntu1) ... 266s Setting up libblas-dev:ppc64el (3.12.0-4) ... 266s update-alternatives: using /usr/lib/powerpc64le-linux-gnu/blas/libblas.so to provide /usr/lib/powerpc64le-linux-gnu/libblas.so (libblas.so-powerpc64le-linux-gnu) in auto mode 266s Setting up libsz2:ppc64el (1.1.3-1) ... 266s Setting up dctrl-tools (2.24-3build3) ... 266s Setting up libjs-bootstrap (3.4.1+dfsg-3) ... 266s Setting up libitm1:ppc64el (14.2.0-13ubuntu1) ... 266s Setting up r-bioc-genomeinfodbdata (1.2.13-2) ... 266s Setting up libbz2-dev:ppc64el (1.0.8-6) ... 266s Setting up libjs-jquery-selectize.js (0.12.6+dfsg-1.1) ... 266s Setting up r-cran-openssl (2.2.0+dfsg-1) ... 266s Setting up libamd3:ppc64el (1:7.8.3+dfsg-2) ... 266s Setting up libpcre2-dev:ppc64el (10.42-4ubuntu3) ... 266s Setting up libcolamd3:ppc64el (1:7.8.3+dfsg-2) ... 266s Setting up libjs-twitter-bootstrap-datepicker (1.3.1+dfsg1-4.1) ... 266s Setting up libpng-dev:ppc64el (1.6.44-3) ... 266s Setting up r-cran-highr (0.11+dfsg-1) ... 266s Setting up libjpeg-dev:ppc64el (8c-2ubuntu11) ... 266s Setting up r-cran-fontawesome (0.5.2-1) ... 266s Setting up r-bioc-zlibbioc (1.52.0+dfsg-2) ... 266s Setting up libjs-jquery-datatables (1.11.5+dfsg-2) ... 266s Setting up r-cran-jquerylib (0.1.4+dfsg-4) ... 266s Setting up pkgconf:ppc64el (1.8.1-4) ... 266s Setting up libjs-jquery-ui (1.13.2+dfsg-1) ... 266s Setting up pandoc (3.1.11.1+ds-2) ... 266s Setting up libglpk40:ppc64el (5.0-1build2) ... 266s Setting up r-cran-httr (1.4.7+dfsg-1) ... 266s Setting up r-cran-memoise (2.0.1-1) ... 266s Setting up liblapack-dev:ppc64el (3.12.0-4) ... 266s update-alternatives: using /usr/lib/powerpc64le-linux-gnu/lapack/liblapack.so to provide /usr/lib/powerpc64le-linux-gnu/liblapack.so (liblapack.so-powerpc64le-linux-gnu) in auto mode 266s Setting up r-cran-promises (1.3.2+dfsg-1) ... 266s Setting up cpp-14-powerpc64le-linux-gnu (14.2.0-13ubuntu1) ... 266s Setting up r-cran-matrix (1.7-2-1) ... 266s Setting up cpp-14 (14.2.0-13ubuntu1) ... 266s Setting up r-bioc-xvector (0.46.0-2) ... 266s Setting up r-cran-knitr (1.49+dfsg-1) ... 266s Setting up libhdf5-310:ppc64el (1.14.5+repack-3) ... 266s Setting up r-cran-sass (0.4.9+dfsg-1) ... 266s Setting up libgcc-14-dev:ppc64el (14.2.0-13ubuntu1) ... 266s Setting up libstdc++-14-dev:ppc64el (14.2.0-13ubuntu1) ... 266s Setting up cpp-powerpc64le-linux-gnu (4:14.1.0-2ubuntu1) ... 266s Setting up gcc-14-powerpc64le-linux-gnu (14.2.0-13ubuntu1) ... 266s Setting up libgfortran-14-dev:ppc64el (14.2.0-13ubuntu1) ... 266s Setting up libhdf5-hl-310:ppc64el (1.14.5+repack-3) ... 266s Setting up libnetcdf19t64:ppc64el (1:4.9.2-6ubuntu2) ... 266s Setting up libboost1.83-dev:ppc64el (1.83.0-4ubuntu2) ... 266s Setting up g++-14-powerpc64le-linux-gnu (14.2.0-13ubuntu1) ... 266s Setting up r-bioc-ucsc.utils (1.2.0+ds-2) ... 266s Setting up r-cran-httpuv (1.6.15+dfsg-1) ... 266s Setting up r-cran-igraph (2.1.3-1) ... 266s Setting up gcc-14 (14.2.0-13ubuntu1) ... 266s Setting up r-bioc-genomeinfodb (1.42.1+dfsg-2) ... 266s Setting up gcc-powerpc64le-linux-gnu (4:14.1.0-2ubuntu1) ... 266s Setting up r-cran-bslib (0.7.0+dfsg-1) ... 266s Setting up cpp (4:14.1.0-2ubuntu1) ... 266s Setting up libboost-dev:ppc64el (1.83.0.2ubuntu1) ... 266s Setting up g++-14 (14.2.0-13ubuntu1) ... 266s Setting up gfortran-14-powerpc64le-linux-gnu (14.2.0-13ubuntu1) ... 266s Setting up gfortran-14 (14.2.0-13ubuntu1) ... 266s Setting up g++-powerpc64le-linux-gnu (4:14.1.0-2ubuntu1) ... 266s Setting up r-cran-bh (1.84.0-1) ... 266s Setting up r-cran-ncdf4 (1.23-1) ... 266s Setting up r-bioc-biostrings (2.74.1+dfsg-2) ... 266s Setting up r-cran-bigmemory (4.6.4-1) ... 266s Setting up r-cran-shiny (1.9.1+dfsg-1) ... 266s Setting up gcc (4:14.1.0-2ubuntu1) ... 266s Setting up gfortran-powerpc64le-linux-gnu (4:14.1.0-2ubuntu1) ... 266s Setting up r-cran-rmarkdown (2.29+dfsg-1) ... 266s Setting up g++ (4:14.1.0-2ubuntu1) ... 266s update-alternatives: using /usr/bin/g++ to provide /usr/bin/c++ (c++) in auto mode 266s Setting up build-essential (12.10ubuntu1) ... 266s Setting up gfortran (4:14.1.0-2ubuntu1) ... 266s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode 266s update-alternatives: warning: skip creation of /usr/share/man/man1/f95.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f95) doesn't exist 266s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode 266s update-alternatives: warning: skip creation of /usr/share/man/man1/f77.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f77) doesn't exist 266s Setting up r-base-dev (4.4.2-1build1) ... 266s Setting up pkg-r-autopkgtest (20231212ubuntu1) ... 266s Processing triggers for fontconfig (2.15.0-1.1ubuntu2) ... 266s Processing triggers for libc-bin (2.40-4ubuntu1) ... 266s Processing triggers for man-db (2.13.0-1) ... 267s Processing triggers for install-info (7.1.1-1) ... 268s autopkgtest [09:58:26]: test pkg-r-autopkgtest: /usr/share/dh-r/pkg-r-autopkgtest 268s autopkgtest [09:58:26]: test pkg-r-autopkgtest: [----------------------- 268s Test: Try to load the R library bio3d 268s 268s R version 4.4.2 (2024-10-31) -- "Pile of Leaves" 268s Copyright (C) 2024 The R Foundation for Statistical Computing 268s Platform: powerpc64le-unknown-linux-gnu 268s 268s R is free software and comes with ABSOLUTELY NO WARRANTY. 268s You are welcome to redistribute it under certain conditions. 268s Type 'license()' or 'licence()' for distribution details. 268s 268s R is a collaborative project with many contributors. 268s Type 'contributors()' for more information and 268s 'citation()' on how to cite R or R packages in publications. 268s 268s Type 'demo()' for some demos, 'help()' for on-line help, or 268s 'help.start()' for an HTML browser interface to help. 268s Type 'q()' to quit R. 268s 269s > library('bio3d') 269s > 269s > 269s Other tests are currently unsupported! 269s They will be progressively added. 269s autopkgtest [09:58:27]: test pkg-r-autopkgtest: -----------------------] 270s autopkgtest [09:58:28]: test pkg-r-autopkgtest: - - - - - - - - - - results - - - - - - - - - - 270s pkg-r-autopkgtest PASS 270s autopkgtest [09:58:28]: @@@@@@@@@@@@@@@@@@@@ summary 270s run-unit-test PASS 270s pkg-r-autopkgtest PASS 275s nova [W] Using flock in prodstack6-ppc64el 275s Creating nova instance adt-plucky-ppc64el-r-cran-bio3d-20250129-095358-juju-7f2275-prod-proposed-migration-environment-20-535fe98e-5129-453a-8f70-3a0d9b532e21 from image adt/ubuntu-plucky-ppc64el-server-20250128.img (UUID 1fd0aaf4-9547-456c-9f93-acc2b44dd7db)... 275s nova [W] Timed out waiting for c1989bde-a8d4-48c4-bd54-b5b6cb3fb2cd to get deleted.