0s autopkgtest [11:15:26]: starting date and time: 2024-11-13 11:15:26+0000 0s autopkgtest [11:15:26]: git checkout: 0acbae0a WIP show VirtSubproc stderr in real-time 0s autopkgtest [11:15:26]: host juju-7f2275-prod-proposed-migration-environment-2; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.y2aa80za/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:python3-defaults,src:python3-stdlib-extensions --apt-upgrade python-treetime --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 '--env=ADT_TEST_TRIGGERS=python3-defaults/3.12.7-1 python3-stdlib-extensions/3.12.7-1' -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest-ppc64el --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-2@bos03-ppc64el-26.secgroup --name adt-plucky-ppc64el-python-treetime-20241113-111526-juju-7f2275-prod-proposed-migration-environment-2-14270cf4-c690-4351-9ffa-037da6f2d422 --image adt/ubuntu-plucky-ppc64el-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-2 --net-id=net_prod-proposed-migration-ppc64el -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,keyserver.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/ 117s autopkgtest [11:17:23]: testbed dpkg architecture: ppc64el 117s autopkgtest [11:17:23]: testbed apt version: 2.9.8 117s autopkgtest [11:17:23]: @@@@@@@@@@@@@@@@@@@@ test bed setup 118s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease [73.9 kB] 119s Get:2 http://ftpmaster.internal/ubuntu plucky-proposed/main Sources [76.4 kB] 119s Get:3 http://ftpmaster.internal/ubuntu plucky-proposed/restricted Sources [7016 B] 119s Get:4 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse Sources [15.3 kB] 119s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/universe Sources [849 kB] 119s Get:6 http://ftpmaster.internal/ubuntu plucky-proposed/main ppc64el Packages [86.2 kB] 119s Get:7 http://ftpmaster.internal/ubuntu plucky-proposed/universe ppc64el Packages [588 kB] 119s Get:8 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse ppc64el Packages [19.6 kB] 119s Fetched 1715 kB in 1s (1817 kB/s) 119s Reading package lists... 122s Reading package lists... 122s Building dependency tree... 122s Reading state information... 123s Calculating upgrade... 123s The following NEW packages will be installed: 123s python3.13-gdbm 123s The following packages will be upgraded: 123s libpython3-stdlib python3 python3-gdbm python3-minimal 123s 4 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. 123s Need to get 102 kB of archives. 123s After this operation, 141 kB of additional disk space will be used. 123s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed/main ppc64el python3-minimal ppc64el 3.12.7-1 [27.4 kB] 123s Get:2 http://ftpmaster.internal/ubuntu plucky-proposed/main ppc64el python3 ppc64el 3.12.7-1 [24.0 kB] 123s Get:3 http://ftpmaster.internal/ubuntu plucky-proposed/main ppc64el libpython3-stdlib ppc64el 3.12.7-1 [10.0 kB] 123s Get:4 http://ftpmaster.internal/ubuntu plucky/main ppc64el python3.13-gdbm ppc64el 3.13.0-2 [31.5 kB] 124s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/main ppc64el python3-gdbm ppc64el 3.12.7-1 [8640 B] 124s Fetched 102 kB in 0s (293 kB/s) 124s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 73767 files and directories currently installed.) 124s Preparing to unpack .../python3-minimal_3.12.7-1_ppc64el.deb ... 124s Unpacking python3-minimal (3.12.7-1) over (3.12.6-0ubuntu1) ... 124s Setting up python3-minimal (3.12.7-1) ... 125s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 73767 files and directories currently installed.) 125s Preparing to unpack .../python3_3.12.7-1_ppc64el.deb ... 125s Unpacking python3 (3.12.7-1) over (3.12.6-0ubuntu1) ... 125s Preparing to unpack .../libpython3-stdlib_3.12.7-1_ppc64el.deb ... 125s Unpacking libpython3-stdlib:ppc64el (3.12.7-1) over (3.12.6-0ubuntu1) ... 125s Selecting previously unselected package python3.13-gdbm. 125s Preparing to unpack .../python3.13-gdbm_3.13.0-2_ppc64el.deb ... 125s Unpacking python3.13-gdbm (3.13.0-2) ... 125s Preparing to unpack .../python3-gdbm_3.12.7-1_ppc64el.deb ... 125s Unpacking python3-gdbm:ppc64el (3.12.7-1) over (3.12.6-1ubuntu1) ... 125s Setting up python3.13-gdbm (3.13.0-2) ... 125s Setting up libpython3-stdlib:ppc64el (3.12.7-1) ... 125s Setting up python3 (3.12.7-1) ... 125s Setting up python3-gdbm:ppc64el (3.12.7-1) ... 125s Processing triggers for man-db (2.12.1-3) ... 126s Reading package lists... 126s Building dependency tree... 126s Reading state information... 127s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 127s Hit:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease 127s Hit:2 http://ftpmaster.internal/ubuntu plucky InRelease 127s Hit:3 http://ftpmaster.internal/ubuntu plucky-updates InRelease 127s Hit:4 http://ftpmaster.internal/ubuntu plucky-security InRelease 128s Reading package lists... 128s Reading package lists... 129s Building dependency tree... 129s Reading state information... 129s Calculating upgrade... 129s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 129s Reading package lists... 130s Building dependency tree... 130s Reading state information... 130s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 134s autopkgtest [11:17:40]: testbed running kernel: Linux 6.11.0-8-generic #8-Ubuntu SMP Mon Sep 16 13:49:23 UTC 2024 134s autopkgtest [11:17:40]: @@@@@@@@@@@@@@@@@@@@ apt-source python-treetime 137s Get:1 http://ftpmaster.internal/ubuntu plucky/universe python-treetime 0.11.4-1 (dsc) [2611 B] 137s Get:2 http://ftpmaster.internal/ubuntu plucky/universe python-treetime 0.11.4-1 (tar) [5117 kB] 137s Get:3 http://ftpmaster.internal/ubuntu plucky/universe python-treetime 0.11.4-1 (tar) [1291 kB] 137s Get:4 http://ftpmaster.internal/ubuntu plucky/universe python-treetime 0.11.4-1 (diff) [8028 B] 137s gpgv: Signature made Sat Nov 9 21:31:47 2024 UTC 137s gpgv: using RSA key 8F91B227C7D6F2B1948C8236793CF67E8F0D11DA 137s gpgv: issuer "emollier@debian.org" 137s gpgv: Can't check signature: No public key 137s dpkg-source: warning: cannot verify inline signature for ./python-treetime_0.11.4-1.dsc: no acceptable signature found 137s autopkgtest [11:17:43]: testing package python-treetime version 0.11.4-1 139s autopkgtest [11:17:45]: build not needed 142s autopkgtest [11:17:48]: test run-unit-test: preparing testbed 144s Reading package lists... 144s Building dependency tree... 144s Reading state information... 145s Starting pkgProblemResolver with broken count: 0 145s Starting 2 pkgProblemResolver with broken count: 0 145s Done 145s The following additional packages will be installed: 145s blt fontconfig-config fonts-dejavu-core fonts-dejavu-mono fonts-lyx 145s fonts-urw-base35 libblas3 libcairo2 libdeflate0 libfontconfig1 libfontenc1 145s libgfortran5 libgomp1 libgraphite2-3 libharfbuzz0b libimagequant0 libjbig0 145s libjpeg-turbo8 libjpeg8 libjs-jquery libjs-jquery-ui liblapack3 liblbfgsb0 145s liblcms2-2 liblerc4 libopenjp2-7 libpixman-1-0 libqhull-r8.0 libraqm0 145s libsharpyuv0 libtcl8.6 libtiff6 libtk8.6 libwebp7 libwebpdemux2 libwebpmux3 145s libxcb-render0 libxcb-shm0 libxft2 libxrender1 libxslt1.1 libxss1 145s python-matplotlib-data python3-appdirs python3-biopython python3-brotli 145s python3-cairo python3-contourpy python3-cycler python3-dateutil 145s python3-decorator python3-fonttools python3-freetype python3-fs 145s python3-kiwisolver python3-lxml python3-lz4 python3-matplotlib 145s python3-mpmath python3-numpy python3-packaging python3-pandas 145s python3-pandas-lib python3-pil python3-pil.imagetk python3-reportlab 145s python3-rlpycairo python3-scipy python3-six python3-sympy python3-tk 145s python3-treetime python3-tz python3-ufolib2 python3-unicodedata2 145s python3.12-tk python3.13-tk sgml-base tk8.6-blt2.5 unicode-data w3c-sgml-lib 145s x11-common xfonts-encodings xfonts-utils xml-core 145s Suggested packages: 145s blt-demo fonts-freefont-otf | fonts-freefont-ttf fonts-texgyre 145s libjs-jquery-ui-docs liblcms2-utils tcl8.6 tk8.6 bwa clustalo clustalw 145s dialign dssp emboss fasttree mafft muscle3 phylip phyml prank probcons 145s python3-mysqldb python3-mmtf python3-rdflib python3-psycopg2 raxml samtools 145s t-coffee wise python-cycler-doc python-lxml-doc cm-super-minimal dvipng 145s ffmpeg fonts-staypuft ghostscript gir1.2-gtk-3.0 inkscape ipython3 145s librsvg2-common python-matplotlib-doc python3-cairocffi python3-gi-cairo 145s python3-gobject python3-pyqt5 python3-sip python3-tornado 145s texlive-extra-utils texlive-latex-extra python-mpmath-doc python3-gmpy2 gcc 145s gfortran python-numpy-doc python3-dev python3-pytest python-pandas-doc 145s python3-statsmodels python-pil-doc pdf-viewer python3-egenix-mxtexttools 145s python-reportlab-doc rl-accel rl-renderpm python-scipy-doc 145s texlive-fonts-extra python-sympy-doc tix python3-tk-dbg sgml-base-doc 145s debhelper 145s Recommended packages: 145s javascript-common python-biopython-doc ncbi-blast+ python3-bs4 145s python3-cssselect python3-html5lib python3-bottleneck python3-numexpr 145s python3-odf python3-openpyxl python3-tables python3-olefile 145s fonts-dejavu-extra g++ | c++-compiler isympy-common 145s The following NEW packages will be installed: 145s autopkgtest-satdep blt fontconfig-config fonts-dejavu-core fonts-dejavu-mono 145s fonts-lyx fonts-urw-base35 libblas3 libcairo2 libdeflate0 libfontconfig1 145s libfontenc1 libgfortran5 libgomp1 libgraphite2-3 libharfbuzz0b 145s libimagequant0 libjbig0 libjpeg-turbo8 libjpeg8 libjs-jquery libjs-jquery-ui 145s liblapack3 liblbfgsb0 liblcms2-2 liblerc4 libopenjp2-7 libpixman-1-0 145s libqhull-r8.0 libraqm0 libsharpyuv0 libtcl8.6 libtiff6 libtk8.6 libwebp7 145s libwebpdemux2 libwebpmux3 libxcb-render0 libxcb-shm0 libxft2 libxrender1 145s libxslt1.1 libxss1 python-matplotlib-data python3-appdirs python3-biopython 145s python3-brotli python3-cairo python3-contourpy python3-cycler 145s python3-dateutil python3-decorator python3-fonttools python3-freetype 145s python3-fs python3-kiwisolver python3-lxml python3-lz4 python3-matplotlib 145s python3-mpmath python3-numpy python3-packaging python3-pandas 145s python3-pandas-lib python3-pil python3-pil.imagetk python3-reportlab 145s python3-rlpycairo python3-scipy python3-six python3-sympy python3-tk 145s python3-treetime python3-tz python3-ufolib2 python3-unicodedata2 145s python3.12-tk python3.13-tk sgml-base tk8.6-blt2.5 unicode-data w3c-sgml-lib 145s x11-common xfonts-encodings xfonts-utils xml-core 145s 0 upgraded, 86 newly installed, 0 to remove and 0 not upgraded. 145s Need to get 85.9 MB/85.9 MB of archives. 145s After this operation, 357 MB of additional disk space will be used. 145s Get:1 /tmp/autopkgtest.VYNBiO/1-autopkgtest-satdep.deb autopkgtest-satdep ppc64el 0 [720 B] 145s Get:2 http://ftpmaster.internal/ubuntu plucky/main ppc64el sgml-base all 1.31 [11.4 kB] 145s Get:3 http://ftpmaster.internal/ubuntu plucky/main ppc64el libtcl8.6 ppc64el 8.6.15+dfsg-2 [1201 kB] 146s Get:4 http://ftpmaster.internal/ubuntu plucky/main ppc64el fonts-dejavu-mono all 2.37-8 [502 kB] 146s Get:5 http://ftpmaster.internal/ubuntu plucky/main ppc64el fonts-dejavu-core all 2.37-8 [835 kB] 146s Get:6 http://ftpmaster.internal/ubuntu plucky/main ppc64el libfontenc1 ppc64el 1:1.1.8-1build1 [15.8 kB] 146s Get:7 http://ftpmaster.internal/ubuntu plucky/main ppc64el x11-common all 1:7.7+23ubuntu3 [21.7 kB] 146s Get:8 http://ftpmaster.internal/ubuntu plucky/main ppc64el xfonts-encodings all 1:1.0.5-0ubuntu2 [578 kB] 146s Get:9 http://ftpmaster.internal/ubuntu plucky/main ppc64el xfonts-utils ppc64el 1:7.7+7 [114 kB] 146s Get:10 http://ftpmaster.internal/ubuntu plucky/main ppc64el fonts-urw-base35 all 20200910-8 [11.0 MB] 146s Get:11 http://ftpmaster.internal/ubuntu plucky/main ppc64el fontconfig-config ppc64el 2.15.0-1.1ubuntu2 [37.4 kB] 146s Get:12 http://ftpmaster.internal/ubuntu plucky/main ppc64el libfontconfig1 ppc64el 2.15.0-1.1ubuntu2 [190 kB] 146s Get:13 http://ftpmaster.internal/ubuntu plucky/main ppc64el libxrender1 ppc64el 1:0.9.10-1.1build1 [23.1 kB] 146s Get:14 http://ftpmaster.internal/ubuntu plucky/main ppc64el libxft2 ppc64el 2.3.6-1build1 [61.5 kB] 146s Get:15 http://ftpmaster.internal/ubuntu plucky/main ppc64el libxss1 ppc64el 1:1.2.3-1build3 [7980 B] 146s Get:16 http://ftpmaster.internal/ubuntu plucky/main ppc64el libtk8.6 ppc64el 8.6.15-1 [942 kB] 146s Get:17 http://ftpmaster.internal/ubuntu plucky/main ppc64el tk8.6-blt2.5 ppc64el 2.5.3+dfsg-7build1 [784 kB] 146s Get:18 http://ftpmaster.internal/ubuntu plucky/main ppc64el blt ppc64el 2.5.3+dfsg-7build1 [4840 B] 146s Get:19 http://ftpmaster.internal/ubuntu plucky/universe ppc64el fonts-lyx all 2.4.2.1-1 [171 kB] 146s Get:20 http://ftpmaster.internal/ubuntu plucky/main ppc64el libblas3 ppc64el 3.12.0-3build2 [222 kB] 146s Get:21 http://ftpmaster.internal/ubuntu plucky/main ppc64el libpixman-1-0 ppc64el 0.44.0-3 [334 kB] 146s Get:22 http://ftpmaster.internal/ubuntu plucky/main ppc64el libxcb-render0 ppc64el 1.17.0-2 [17.2 kB] 146s Get:23 http://ftpmaster.internal/ubuntu plucky/main ppc64el libxcb-shm0 ppc64el 1.17.0-2 [5980 B] 146s Get:24 http://ftpmaster.internal/ubuntu plucky/main ppc64el libcairo2 ppc64el 1.18.2-2 [747 kB] 146s Get:25 http://ftpmaster.internal/ubuntu plucky/main ppc64el libdeflate0 ppc64el 1.22-1 [63.3 kB] 146s Get:26 http://ftpmaster.internal/ubuntu plucky/main ppc64el libgfortran5 ppc64el 14.2.0-8ubuntu1 [571 kB] 146s Get:27 http://ftpmaster.internal/ubuntu plucky/main ppc64el libgomp1 ppc64el 14.2.0-8ubuntu1 [161 kB] 146s Get:28 http://ftpmaster.internal/ubuntu plucky/main ppc64el libgraphite2-3 ppc64el 1.3.14-2ubuntu1 [84.6 kB] 146s Get:29 http://ftpmaster.internal/ubuntu plucky/main ppc64el libharfbuzz0b ppc64el 10.0.1-1 [596 kB] 146s Get:30 http://ftpmaster.internal/ubuntu plucky/main ppc64el libimagequant0 ppc64el 2.18.0-1build1 [43.2 kB] 146s Get:31 http://ftpmaster.internal/ubuntu plucky/main ppc64el libjpeg-turbo8 ppc64el 2.1.5-2ubuntu2 [219 kB] 146s Get:32 http://ftpmaster.internal/ubuntu plucky/main ppc64el libjpeg8 ppc64el 8c-2ubuntu11 [2148 B] 146s Get:33 http://ftpmaster.internal/ubuntu plucky/main ppc64el libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [328 kB] 146s Get:34 http://ftpmaster.internal/ubuntu plucky/universe ppc64el libjs-jquery-ui all 1.13.2+dfsg-1 [252 kB] 146s Get:35 http://ftpmaster.internal/ubuntu plucky/main ppc64el liblapack3 ppc64el 3.12.0-3build2 [2806 kB] 147s Get:36 http://ftpmaster.internal/ubuntu plucky/universe ppc64el liblbfgsb0 ppc64el 3.0+dfsg.4-1build1 [33.0 kB] 147s Get:37 http://ftpmaster.internal/ubuntu plucky/main ppc64el liblcms2-2 ppc64el 2.16-2 [243 kB] 147s Get:38 http://ftpmaster.internal/ubuntu plucky/main ppc64el liblerc4 ppc64el 4.0.0+ds-4ubuntu2 [270 kB] 147s Get:39 http://ftpmaster.internal/ubuntu plucky/universe ppc64el libqhull-r8.0 ppc64el 2020.2-6build1 [225 kB] 147s Get:40 http://ftpmaster.internal/ubuntu plucky/main ppc64el libraqm0 ppc64el 0.10.1-1build1 [19.4 kB] 147s Get:41 http://ftpmaster.internal/ubuntu plucky/main ppc64el libsharpyuv0 ppc64el 1.4.0-0.1 [22.0 kB] 147s Get:42 http://ftpmaster.internal/ubuntu plucky/main ppc64el libjbig0 ppc64el 2.1-6.1ubuntu2 [35.9 kB] 147s Get:43 http://ftpmaster.internal/ubuntu plucky/main ppc64el libwebp7 ppc64el 1.4.0-0.1 [309 kB] 147s Get:44 http://ftpmaster.internal/ubuntu plucky/main ppc64el libtiff6 ppc64el 4.5.1+git230720-4ubuntu4 [272 kB] 147s Get:45 http://ftpmaster.internal/ubuntu plucky/main ppc64el libwebpdemux2 ppc64el 1.4.0-0.1 [14.1 kB] 147s Get:46 http://ftpmaster.internal/ubuntu plucky/main ppc64el libwebpmux3 ppc64el 1.4.0-0.1 [31.4 kB] 147s Get:47 http://ftpmaster.internal/ubuntu plucky/main ppc64el libxslt1.1 ppc64el 1.1.39-0exp1ubuntu1 [191 kB] 147s Get:48 http://ftpmaster.internal/ubuntu plucky/universe ppc64el python-matplotlib-data all 3.8.3-3 [2928 kB] 147s Get:49 http://ftpmaster.internal/ubuntu plucky/main ppc64el python3-appdirs all 1.4.4-4 [10.9 kB] 147s Get:50 http://ftpmaster.internal/ubuntu plucky/main ppc64el python3-numpy ppc64el 1:1.26.4+ds-11build1 [4434 kB] 147s Get:51 http://ftpmaster.internal/ubuntu plucky/main ppc64el python3.12-tk ppc64el 3.12.7-3 [116 kB] 147s Get:52 http://ftpmaster.internal/ubuntu plucky/main ppc64el python3.13-tk ppc64el 3.13.0-2 [107 kB] 147s Get:53 http://ftpmaster.internal/ubuntu plucky-proposed/main ppc64el python3-tk ppc64el 3.12.7-1 [9752 B] 147s Get:54 http://ftpmaster.internal/ubuntu plucky/universe ppc64el python3-pil.imagetk ppc64el 10.4.0-1ubuntu1 [9810 B] 147s Get:55 http://ftpmaster.internal/ubuntu plucky/main ppc64el libopenjp2-7 ppc64el 2.5.0-2ubuntu1 [246 kB] 147s Get:56 http://ftpmaster.internal/ubuntu plucky/main ppc64el python3-pil ppc64el 10.4.0-1ubuntu1 [581 kB] 147s Get:57 http://ftpmaster.internal/ubuntu plucky/main ppc64el python3-cairo ppc64el 1.26.1-2 [129 kB] 147s Get:58 http://ftpmaster.internal/ubuntu plucky/universe ppc64el python3-freetype all 2.5.1-1 [92.3 kB] 147s Get:59 http://ftpmaster.internal/ubuntu plucky/universe ppc64el python3-rlpycairo all 0.3.0-3 [9130 B] 147s Get:60 http://ftpmaster.internal/ubuntu plucky/universe ppc64el python3-reportlab all 4.2.5-1 [1107 kB] 147s Get:61 http://ftpmaster.internal/ubuntu plucky/main ppc64el xml-core all 0.19 [20.3 kB] 147s Get:62 http://ftpmaster.internal/ubuntu plucky/universe ppc64el w3c-sgml-lib all 1.3-3 [280 kB] 147s Get:63 http://ftpmaster.internal/ubuntu plucky/universe ppc64el python3-biopython ppc64el 1.84+dfsg-4 [1738 kB] 147s Get:64 http://ftpmaster.internal/ubuntu plucky/universe ppc64el python3-brotli ppc64el 1.1.0-2build2 [413 kB] 147s Get:65 http://ftpmaster.internal/ubuntu plucky/universe ppc64el python3-contourpy ppc64el 1.3.0-2 [217 kB] 147s Get:66 http://ftpmaster.internal/ubuntu plucky/universe ppc64el python3-cycler all 0.12.1-1 [9716 B] 147s Get:67 http://ftpmaster.internal/ubuntu plucky/main ppc64el python3-six all 1.16.0-7 [13.1 kB] 147s Get:68 http://ftpmaster.internal/ubuntu plucky/main ppc64el python3-dateutil all 2.9.0-2 [80.3 kB] 147s Get:69 http://ftpmaster.internal/ubuntu plucky/main ppc64el python3-decorator all 5.1.1-5 [10.1 kB] 147s Get:70 http://ftpmaster.internal/ubuntu plucky/universe ppc64el python3-scipy ppc64el 1.13.1-5 [18.3 MB] 148s Get:71 http://ftpmaster.internal/ubuntu plucky/universe ppc64el python3-ufolib2 all 0.16.1+dfsg1-1 [33.4 kB] 148s Get:72 http://ftpmaster.internal/ubuntu plucky/universe ppc64el python3-mpmath all 1.3.0-1 [425 kB] 148s Get:73 http://ftpmaster.internal/ubuntu plucky/universe ppc64el python3-sympy all 1.13.3-1 [4228 kB] 148s Get:74 http://ftpmaster.internal/ubuntu plucky/main ppc64el python3-tz all 2024.1-2 [31.4 kB] 148s Get:75 http://ftpmaster.internal/ubuntu plucky/universe ppc64el python3-fs all 2.4.16-4 [91.3 kB] 148s Get:76 http://ftpmaster.internal/ubuntu plucky/main ppc64el python3-lxml ppc64el 5.3.0-1 [1354 kB] 148s Get:77 http://ftpmaster.internal/ubuntu plucky/universe ppc64el python3-lz4 ppc64el 4.0.2+dfsg-1build4 [27.8 kB] 148s Get:78 http://ftpmaster.internal/ubuntu plucky/universe ppc64el python3-unicodedata2 ppc64el 15.1.0+ds-1build1 [367 kB] 148s Get:79 http://ftpmaster.internal/ubuntu plucky/universe ppc64el unicode-data all 15.1.0-1 [8878 kB] 149s Get:80 http://ftpmaster.internal/ubuntu plucky/universe ppc64el python3-fonttools ppc64el 4.46.0-1build2 [1473 kB] 149s Get:81 http://ftpmaster.internal/ubuntu plucky/universe ppc64el python3-kiwisolver ppc64el 1.4.7-2 [59.2 kB] 149s Get:82 http://ftpmaster.internal/ubuntu plucky/main ppc64el python3-packaging all 24.1-1 [41.4 kB] 149s Get:83 http://ftpmaster.internal/ubuntu plucky/universe ppc64el python3-matplotlib ppc64el 3.8.3-3 [4610 kB] 149s Get:84 http://ftpmaster.internal/ubuntu plucky/universe ppc64el python3-pandas-lib ppc64el 2.2.3+dfsg-5 [4761 kB] 149s Get:85 http://ftpmaster.internal/ubuntu plucky/universe ppc64el python3-pandas all 2.2.3+dfsg-5 [3112 kB] 149s Get:86 http://ftpmaster.internal/ubuntu plucky/universe ppc64el python3-treetime all 0.11.4-1 [941 kB] 150s Fetched 85.9 MB in 4s (20.7 MB/s) 150s Selecting previously unselected package sgml-base. 150s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 73774 files and directories currently installed.) 150s Preparing to unpack .../00-sgml-base_1.31_all.deb ... 150s Unpacking sgml-base (1.31) ... 150s Selecting previously unselected package libtcl8.6:ppc64el. 150s Preparing to unpack .../01-libtcl8.6_8.6.15+dfsg-2_ppc64el.deb ... 150s Unpacking libtcl8.6:ppc64el (8.6.15+dfsg-2) ... 150s Selecting previously unselected package fonts-dejavu-mono. 150s Preparing to unpack .../02-fonts-dejavu-mono_2.37-8_all.deb ... 150s Unpacking fonts-dejavu-mono (2.37-8) ... 150s Selecting previously unselected package fonts-dejavu-core. 150s Preparing to unpack .../03-fonts-dejavu-core_2.37-8_all.deb ... 150s Unpacking fonts-dejavu-core (2.37-8) ... 150s Selecting previously unselected package libfontenc1:ppc64el. 150s Preparing to unpack .../04-libfontenc1_1%3a1.1.8-1build1_ppc64el.deb ... 150s Unpacking libfontenc1:ppc64el (1:1.1.8-1build1) ... 150s Selecting previously unselected package x11-common. 150s Preparing to unpack .../05-x11-common_1%3a7.7+23ubuntu3_all.deb ... 150s Unpacking x11-common (1:7.7+23ubuntu3) ... 150s Selecting previously unselected package xfonts-encodings. 150s Preparing to unpack .../06-xfonts-encodings_1%3a1.0.5-0ubuntu2_all.deb ... 150s Unpacking xfonts-encodings (1:1.0.5-0ubuntu2) ... 150s Selecting previously unselected package xfonts-utils. 150s Preparing to unpack .../07-xfonts-utils_1%3a7.7+7_ppc64el.deb ... 150s Unpacking xfonts-utils (1:7.7+7) ... 150s Selecting previously unselected package fonts-urw-base35. 150s Preparing to unpack .../08-fonts-urw-base35_20200910-8_all.deb ... 150s Unpacking fonts-urw-base35 (20200910-8) ... 150s Selecting previously unselected package fontconfig-config. 150s Preparing to unpack .../09-fontconfig-config_2.15.0-1.1ubuntu2_ppc64el.deb ... 150s Unpacking fontconfig-config (2.15.0-1.1ubuntu2) ... 151s Selecting previously unselected package libfontconfig1:ppc64el. 151s Preparing to unpack .../10-libfontconfig1_2.15.0-1.1ubuntu2_ppc64el.deb ... 151s Unpacking libfontconfig1:ppc64el (2.15.0-1.1ubuntu2) ... 151s Selecting previously unselected package libxrender1:ppc64el. 151s Preparing to unpack .../11-libxrender1_1%3a0.9.10-1.1build1_ppc64el.deb ... 151s Unpacking libxrender1:ppc64el (1:0.9.10-1.1build1) ... 151s Selecting previously unselected package libxft2:ppc64el. 151s Preparing to unpack .../12-libxft2_2.3.6-1build1_ppc64el.deb ... 151s Unpacking libxft2:ppc64el (2.3.6-1build1) ... 151s Selecting previously unselected package libxss1:ppc64el. 151s Preparing to unpack .../13-libxss1_1%3a1.2.3-1build3_ppc64el.deb ... 151s Unpacking libxss1:ppc64el (1:1.2.3-1build3) ... 151s Selecting previously unselected package libtk8.6:ppc64el. 151s Preparing to unpack .../14-libtk8.6_8.6.15-1_ppc64el.deb ... 151s Unpacking libtk8.6:ppc64el (8.6.15-1) ... 151s Selecting previously unselected package tk8.6-blt2.5. 151s Preparing to unpack .../15-tk8.6-blt2.5_2.5.3+dfsg-7build1_ppc64el.deb ... 151s Unpacking tk8.6-blt2.5 (2.5.3+dfsg-7build1) ... 151s Selecting previously unselected package blt. 151s Preparing to unpack .../16-blt_2.5.3+dfsg-7build1_ppc64el.deb ... 151s Unpacking blt (2.5.3+dfsg-7build1) ... 151s Selecting previously unselected package fonts-lyx. 151s Preparing to unpack .../17-fonts-lyx_2.4.2.1-1_all.deb ... 151s Unpacking fonts-lyx (2.4.2.1-1) ... 151s Selecting previously unselected package libblas3:ppc64el. 151s Preparing to unpack .../18-libblas3_3.12.0-3build2_ppc64el.deb ... 151s Unpacking libblas3:ppc64el (3.12.0-3build2) ... 151s Selecting previously unselected package libpixman-1-0:ppc64el. 151s Preparing to unpack .../19-libpixman-1-0_0.44.0-3_ppc64el.deb ... 151s Unpacking libpixman-1-0:ppc64el (0.44.0-3) ... 151s Selecting previously unselected package libxcb-render0:ppc64el. 151s Preparing to unpack .../20-libxcb-render0_1.17.0-2_ppc64el.deb ... 151s Unpacking libxcb-render0:ppc64el (1.17.0-2) ... 151s Selecting previously unselected package libxcb-shm0:ppc64el. 151s Preparing to unpack .../21-libxcb-shm0_1.17.0-2_ppc64el.deb ... 151s Unpacking libxcb-shm0:ppc64el (1.17.0-2) ... 151s Selecting previously unselected package libcairo2:ppc64el. 151s Preparing to unpack .../22-libcairo2_1.18.2-2_ppc64el.deb ... 151s Unpacking libcairo2:ppc64el (1.18.2-2) ... 151s Selecting previously unselected package libdeflate0:ppc64el. 151s Preparing to unpack .../23-libdeflate0_1.22-1_ppc64el.deb ... 151s Unpacking libdeflate0:ppc64el (1.22-1) ... 151s Selecting previously unselected package libgfortran5:ppc64el. 151s Preparing to unpack .../24-libgfortran5_14.2.0-8ubuntu1_ppc64el.deb ... 151s Unpacking libgfortran5:ppc64el (14.2.0-8ubuntu1) ... 151s Selecting previously unselected package libgomp1:ppc64el. 151s Preparing to unpack .../25-libgomp1_14.2.0-8ubuntu1_ppc64el.deb ... 151s Unpacking libgomp1:ppc64el (14.2.0-8ubuntu1) ... 151s Selecting previously unselected package libgraphite2-3:ppc64el. 151s Preparing to unpack .../26-libgraphite2-3_1.3.14-2ubuntu1_ppc64el.deb ... 151s Unpacking libgraphite2-3:ppc64el (1.3.14-2ubuntu1) ... 151s Selecting previously unselected package libharfbuzz0b:ppc64el. 151s Preparing to unpack .../27-libharfbuzz0b_10.0.1-1_ppc64el.deb ... 151s Unpacking libharfbuzz0b:ppc64el (10.0.1-1) ... 151s Selecting previously unselected package libimagequant0:ppc64el. 151s Preparing to unpack .../28-libimagequant0_2.18.0-1build1_ppc64el.deb ... 151s Unpacking libimagequant0:ppc64el (2.18.0-1build1) ... 151s Selecting previously unselected package libjpeg-turbo8:ppc64el. 151s Preparing to unpack .../29-libjpeg-turbo8_2.1.5-2ubuntu2_ppc64el.deb ... 151s Unpacking libjpeg-turbo8:ppc64el (2.1.5-2ubuntu2) ... 151s Selecting previously unselected package libjpeg8:ppc64el. 151s Preparing to unpack .../30-libjpeg8_8c-2ubuntu11_ppc64el.deb ... 151s Unpacking libjpeg8:ppc64el (8c-2ubuntu11) ... 151s Selecting previously unselected package libjs-jquery. 151s Preparing to unpack .../31-libjs-jquery_3.6.1+dfsg+~3.5.14-1_all.deb ... 151s Unpacking libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... 151s Selecting previously unselected package libjs-jquery-ui. 151s Preparing to unpack .../32-libjs-jquery-ui_1.13.2+dfsg-1_all.deb ... 151s Unpacking libjs-jquery-ui (1.13.2+dfsg-1) ... 151s Selecting previously unselected package liblapack3:ppc64el. 151s Preparing to unpack .../33-liblapack3_3.12.0-3build2_ppc64el.deb ... 151s Unpacking liblapack3:ppc64el (3.12.0-3build2) ... 151s Selecting previously unselected package liblbfgsb0:ppc64el. 151s Preparing to unpack .../34-liblbfgsb0_3.0+dfsg.4-1build1_ppc64el.deb ... 151s Unpacking liblbfgsb0:ppc64el (3.0+dfsg.4-1build1) ... 151s Selecting previously unselected package liblcms2-2:ppc64el. 151s Preparing to unpack .../35-liblcms2-2_2.16-2_ppc64el.deb ... 151s Unpacking liblcms2-2:ppc64el (2.16-2) ... 151s Selecting previously unselected package liblerc4:ppc64el. 151s Preparing to unpack .../36-liblerc4_4.0.0+ds-4ubuntu2_ppc64el.deb ... 151s Unpacking liblerc4:ppc64el (4.0.0+ds-4ubuntu2) ... 151s Selecting previously unselected package libqhull-r8.0:ppc64el. 151s Preparing to unpack .../37-libqhull-r8.0_2020.2-6build1_ppc64el.deb ... 151s Unpacking libqhull-r8.0:ppc64el (2020.2-6build1) ... 151s Selecting previously unselected package libraqm0:ppc64el. 151s Preparing to unpack .../38-libraqm0_0.10.1-1build1_ppc64el.deb ... 151s Unpacking libraqm0:ppc64el (0.10.1-1build1) ... 151s Selecting previously unselected package libsharpyuv0:ppc64el. 151s Preparing to unpack .../39-libsharpyuv0_1.4.0-0.1_ppc64el.deb ... 151s Unpacking libsharpyuv0:ppc64el (1.4.0-0.1) ... 151s Selecting previously unselected package libjbig0:ppc64el. 151s Preparing to unpack .../40-libjbig0_2.1-6.1ubuntu2_ppc64el.deb ... 151s Unpacking libjbig0:ppc64el (2.1-6.1ubuntu2) ... 151s Selecting previously unselected package libwebp7:ppc64el. 151s Preparing to unpack .../41-libwebp7_1.4.0-0.1_ppc64el.deb ... 151s Unpacking libwebp7:ppc64el (1.4.0-0.1) ... 151s Selecting previously unselected package libtiff6:ppc64el. 151s Preparing to unpack .../42-libtiff6_4.5.1+git230720-4ubuntu4_ppc64el.deb ... 151s Unpacking libtiff6:ppc64el (4.5.1+git230720-4ubuntu4) ... 151s Selecting previously unselected package libwebpdemux2:ppc64el. 151s Preparing to unpack .../43-libwebpdemux2_1.4.0-0.1_ppc64el.deb ... 151s Unpacking libwebpdemux2:ppc64el (1.4.0-0.1) ... 151s Selecting previously unselected package libwebpmux3:ppc64el. 151s Preparing to unpack .../44-libwebpmux3_1.4.0-0.1_ppc64el.deb ... 151s Unpacking libwebpmux3:ppc64el (1.4.0-0.1) ... 151s Selecting previously unselected package libxslt1.1:ppc64el. 151s Preparing to unpack .../45-libxslt1.1_1.1.39-0exp1ubuntu1_ppc64el.deb ... 151s Unpacking libxslt1.1:ppc64el (1.1.39-0exp1ubuntu1) ... 151s Selecting previously unselected package python-matplotlib-data. 151s Preparing to unpack .../46-python-matplotlib-data_3.8.3-3_all.deb ... 151s Unpacking python-matplotlib-data (3.8.3-3) ... 152s Selecting previously unselected package python3-appdirs. 152s Preparing to unpack .../47-python3-appdirs_1.4.4-4_all.deb ... 152s Unpacking python3-appdirs (1.4.4-4) ... 152s Selecting previously unselected package python3-numpy. 152s Preparing to unpack .../48-python3-numpy_1%3a1.26.4+ds-11build1_ppc64el.deb ... 152s Unpacking python3-numpy (1:1.26.4+ds-11build1) ... 152s Selecting previously unselected package python3.12-tk. 152s Preparing to unpack .../49-python3.12-tk_3.12.7-3_ppc64el.deb ... 152s Unpacking python3.12-tk (3.12.7-3) ... 152s Selecting previously unselected package python3.13-tk. 152s Preparing to unpack .../50-python3.13-tk_3.13.0-2_ppc64el.deb ... 152s Unpacking python3.13-tk (3.13.0-2) ... 152s Selecting previously unselected package python3-tk:ppc64el. 152s Preparing to unpack .../51-python3-tk_3.12.7-1_ppc64el.deb ... 152s Unpacking python3-tk:ppc64el (3.12.7-1) ... 152s Selecting previously unselected package python3-pil.imagetk:ppc64el. 152s Preparing to unpack .../52-python3-pil.imagetk_10.4.0-1ubuntu1_ppc64el.deb ... 152s Unpacking python3-pil.imagetk:ppc64el (10.4.0-1ubuntu1) ... 152s Selecting previously unselected package libopenjp2-7:ppc64el. 152s Preparing to unpack .../53-libopenjp2-7_2.5.0-2ubuntu1_ppc64el.deb ... 152s Unpacking libopenjp2-7:ppc64el (2.5.0-2ubuntu1) ... 152s Selecting previously unselected package python3-pil:ppc64el. 152s Preparing to unpack .../54-python3-pil_10.4.0-1ubuntu1_ppc64el.deb ... 152s Unpacking python3-pil:ppc64el (10.4.0-1ubuntu1) ... 152s Selecting previously unselected package python3-cairo. 152s Preparing to unpack .../55-python3-cairo_1.26.1-2_ppc64el.deb ... 152s Unpacking python3-cairo (1.26.1-2) ... 152s Selecting previously unselected package python3-freetype. 152s Preparing to unpack .../56-python3-freetype_2.5.1-1_all.deb ... 152s Unpacking python3-freetype (2.5.1-1) ... 152s Selecting previously unselected package python3-rlpycairo. 152s Preparing to unpack .../57-python3-rlpycairo_0.3.0-3_all.deb ... 152s Unpacking python3-rlpycairo (0.3.0-3) ... 152s Selecting previously unselected package python3-reportlab. 152s Preparing to unpack .../58-python3-reportlab_4.2.5-1_all.deb ... 152s Unpacking python3-reportlab (4.2.5-1) ... 152s Selecting previously unselected package xml-core. 152s Preparing to unpack .../59-xml-core_0.19_all.deb ... 152s Unpacking xml-core (0.19) ... 152s Selecting previously unselected package w3c-sgml-lib. 152s Preparing to unpack .../60-w3c-sgml-lib_1.3-3_all.deb ... 152s Unpacking w3c-sgml-lib (1.3-3) ... 152s Selecting previously unselected package python3-biopython. 152s Preparing to unpack .../61-python3-biopython_1.84+dfsg-4_ppc64el.deb ... 152s Unpacking python3-biopython (1.84+dfsg-4) ... 152s Selecting previously unselected package python3-brotli. 152s Preparing to unpack .../62-python3-brotli_1.1.0-2build2_ppc64el.deb ... 152s Unpacking python3-brotli (1.1.0-2build2) ... 152s Selecting previously unselected package python3-contourpy. 152s Preparing to unpack .../63-python3-contourpy_1.3.0-2_ppc64el.deb ... 152s Unpacking python3-contourpy (1.3.0-2) ... 152s Selecting previously unselected package python3-cycler. 152s Preparing to unpack .../64-python3-cycler_0.12.1-1_all.deb ... 152s Unpacking python3-cycler (0.12.1-1) ... 152s Selecting previously unselected package python3-six. 152s Preparing to unpack .../65-python3-six_1.16.0-7_all.deb ... 152s Unpacking python3-six (1.16.0-7) ... 152s Selecting previously unselected package python3-dateutil. 152s Preparing to unpack .../66-python3-dateutil_2.9.0-2_all.deb ... 152s Unpacking python3-dateutil (2.9.0-2) ... 152s Selecting previously unselected package python3-decorator. 153s Preparing to unpack .../67-python3-decorator_5.1.1-5_all.deb ... 153s Unpacking python3-decorator (5.1.1-5) ... 153s Selecting previously unselected package python3-scipy. 153s Preparing to unpack .../68-python3-scipy_1.13.1-5_ppc64el.deb ... 153s Unpacking python3-scipy (1.13.1-5) ... 153s Selecting previously unselected package python3-ufolib2. 153s Preparing to unpack .../69-python3-ufolib2_0.16.1+dfsg1-1_all.deb ... 153s Unpacking python3-ufolib2 (0.16.1+dfsg1-1) ... 153s Selecting previously unselected package python3-mpmath. 153s Preparing to unpack .../70-python3-mpmath_1.3.0-1_all.deb ... 153s Unpacking python3-mpmath (1.3.0-1) ... 153s Selecting previously unselected package python3-sympy. 153s Preparing to unpack .../71-python3-sympy_1.13.3-1_all.deb ... 153s Unpacking python3-sympy (1.13.3-1) ... 153s Selecting previously unselected package python3-tz. 153s Preparing to unpack .../72-python3-tz_2024.1-2_all.deb ... 153s Unpacking python3-tz (2024.1-2) ... 154s Selecting previously unselected package python3-fs. 154s Preparing to unpack .../73-python3-fs_2.4.16-4_all.deb ... 154s Unpacking python3-fs (2.4.16-4) ... 154s Selecting previously unselected package python3-lxml:ppc64el. 154s Preparing to unpack .../74-python3-lxml_5.3.0-1_ppc64el.deb ... 154s Unpacking python3-lxml:ppc64el (5.3.0-1) ... 154s Selecting previously unselected package python3-lz4. 154s Preparing to unpack .../75-python3-lz4_4.0.2+dfsg-1build4_ppc64el.deb ... 154s Unpacking python3-lz4 (4.0.2+dfsg-1build4) ... 154s Selecting previously unselected package python3-unicodedata2. 154s Preparing to unpack .../76-python3-unicodedata2_15.1.0+ds-1build1_ppc64el.deb ... 154s Unpacking python3-unicodedata2 (15.1.0+ds-1build1) ... 154s Selecting previously unselected package unicode-data. 154s Preparing to unpack .../77-unicode-data_15.1.0-1_all.deb ... 154s Unpacking unicode-data (15.1.0-1) ... 154s Selecting previously unselected package python3-fonttools. 154s Preparing to unpack .../78-python3-fonttools_4.46.0-1build2_ppc64el.deb ... 154s Unpacking python3-fonttools (4.46.0-1build2) ... 154s Selecting previously unselected package python3-kiwisolver. 154s Preparing to unpack .../79-python3-kiwisolver_1.4.7-2_ppc64el.deb ... 154s Unpacking python3-kiwisolver (1.4.7-2) ... 154s Selecting previously unselected package python3-packaging. 154s Preparing to unpack .../80-python3-packaging_24.1-1_all.deb ... 154s Unpacking python3-packaging (24.1-1) ... 154s Selecting previously unselected package python3-matplotlib. 154s Preparing to unpack .../81-python3-matplotlib_3.8.3-3_ppc64el.deb ... 154s Unpacking python3-matplotlib (3.8.3-3) ... 154s Selecting previously unselected package python3-pandas-lib:ppc64el. 154s Preparing to unpack .../82-python3-pandas-lib_2.2.3+dfsg-5_ppc64el.deb ... 154s Unpacking python3-pandas-lib:ppc64el (2.2.3+dfsg-5) ... 154s Selecting previously unselected package python3-pandas. 154s Preparing to unpack .../83-python3-pandas_2.2.3+dfsg-5_all.deb ... 154s Unpacking python3-pandas (2.2.3+dfsg-5) ... 155s Selecting previously unselected package python3-treetime. 155s Preparing to unpack .../84-python3-treetime_0.11.4-1_all.deb ... 155s Unpacking python3-treetime (0.11.4-1) ... 155s Selecting previously unselected package autopkgtest-satdep. 155s Preparing to unpack .../85-1-autopkgtest-satdep.deb ... 155s Unpacking autopkgtest-satdep (0) ... 155s Setting up libgraphite2-3:ppc64el (1.3.14-2ubuntu1) ... 155s Setting up liblcms2-2:ppc64el (2.16-2) ... 155s Setting up libpixman-1-0:ppc64el (0.44.0-3) ... 155s Setting up libsharpyuv0:ppc64el (1.4.0-0.1) ... 155s Setting up liblerc4:ppc64el (4.0.0+ds-4ubuntu2) ... 155s Setting up libxrender1:ppc64el (1:0.9.10-1.1build1) ... 155s Setting up python3-lz4 (4.0.2+dfsg-1build4) ... 155s Setting up libxcb-render0:ppc64el (1.17.0-2) ... 155s Setting up python3-unicodedata2 (15.1.0+ds-1build1) ... 155s Setting up fonts-lyx (2.4.2.1-1) ... 155s Setting up x11-common (1:7.7+23ubuntu3) ... 155s Setting up libdeflate0:ppc64el (1.22-1) ... 155s Setting up libqhull-r8.0:ppc64el (2020.2-6build1) ... 155s Setting up libxcb-shm0:ppc64el (1.17.0-2) ... 155s Setting up libgomp1:ppc64el (14.2.0-8ubuntu1) ... 155s Setting up python3-freetype (2.5.1-1) ... 156s Setting up libjbig0:ppc64el (2.1-6.1ubuntu2) ... 156s Setting up python3-tz (2024.1-2) ... 156s Setting up unicode-data (15.1.0-1) ... 156s Setting up python3-six (1.16.0-7) ... 156s Setting up python3-decorator (5.1.1-5) ... 156s Setting up libfontenc1:ppc64el (1:1.1.8-1build1) ... 156s Setting up libblas3:ppc64el (3.12.0-3build2) ... 156s update-alternatives: using /usr/lib/powerpc64le-linux-gnu/blas/libblas.so.3 to provide 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libxss1:ppc64el (1:1.2.3-1build3) ... 157s Setting up libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... 157s Setting up python3-mpmath (1.3.0-1) ... 157s Setting up python-matplotlib-data (3.8.3-3) ... 157s Setting up libwebpmux3:ppc64el (1.4.0-0.1) ... 157s Setting up python3-appdirs (1.4.4-4) ... 157s Setting up libjpeg8:ppc64el (8c-2ubuntu11) ... 157s Setting up python3-sympy (1.13.3-1) ... 166s Setting up liblapack3:ppc64el (3.12.0-3build2) ... 166s update-alternatives: using /usr/lib/powerpc64le-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/powerpc64le-linux-gnu/liblapack.so.3 (liblapack.so.3-powerpc64le-linux-gnu) in auto mode 166s Setting up fontconfig-config (2.15.0-1.1ubuntu2) ... 166s Setting up libwebpdemux2:ppc64el (1.4.0-0.1) ... 166s Setting up xfonts-utils (1:7.7+7) ... 166s Setting up python3-fs (2.4.16-4) ... 166s Setting up libjs-jquery-ui (1.13.2+dfsg-1) ... 166s Setting up libraqm0:ppc64el (0.10.1-1build1) ... 166s Setting up python3-numpy (1:1.26.4+ds-11build1) ... 169s Setting up python3-lxml:ppc64el (5.3.0-1) ... 169s Setting up libtiff6:ppc64el (4.5.1+git230720-4ubuntu4) ... 169s Setting up xml-core (0.19) ... 169s Setting up python3-contourpy (1.3.0-2) ... 169s Setting up libfontconfig1:ppc64el (2.15.0-1.1ubuntu2) ... 169s Setting up liblbfgsb0:ppc64el (3.0+dfsg.4-1build1) ... 169s Setting up libxft2:ppc64el (2.3.6-1build1) ... 169s Setting up python3-scipy (1.13.1-5) ... 173s Setting up libtk8.6:ppc64el (8.6.15-1) ... 173s Setting up python3-pandas-lib:ppc64el (2.2.3+dfsg-5) ... 173s Setting up python3.12-tk (3.12.7-3) ... 173s Setting up fonts-urw-base35 (20200910-8) ... 174s Setting up libcairo2:ppc64el (1.18.2-2) ... 174s Setting up python3.13-tk (3.13.0-2) ... 174s Setting up python3-pil:ppc64el (10.4.0-1ubuntu1) ... 174s Setting up python3-pandas (2.2.3+dfsg-5) ... 181s Setting up tk8.6-blt2.5 (2.5.3+dfsg-7build1) ... 181s Setting up python3-cairo (1.26.1-2) ... 181s Setting up blt (2.5.3+dfsg-7build1) ... 181s Setting up python3-tk:ppc64el (3.12.7-1) ... 181s Setting up python3-pil.imagetk:ppc64el (10.4.0-1ubuntu1) ... 181s Setting up python3-rlpycairo (0.3.0-3) ... 181s Setting up python3-reportlab (4.2.5-1) ... 182s Setting up python3-fonttools (4.46.0-1build2) ... 183s Setting up python3-ufolib2 (0.16.1+dfsg1-1) ... 183s Setting up python3-matplotlib (3.8.3-3) ... 185s Processing triggers for libc-bin (2.40-1ubuntu3) ... 185s Processing triggers for man-db (2.12.1-3) ... 186s Processing triggers for sgml-base (1.31) ... 187s Setting up w3c-sgml-lib (1.3-3) ... 223s Setting up python3-biopython (1.84+dfsg-4) ... 225s Setting up python3-treetime (0.11.4-1) ... 225s Setting up autopkgtest-satdep (0) ... 230s (Reading database ... 84529 files and directories currently installed.) 230s Removing autopkgtest-satdep (0) ... 231s autopkgtest [11:19:17]: test run-unit-test: [----------------------- 232s 232s 0.00 -TreeAnc: set-up 232s read alignment from file h3n2_na/h3n2_na_20.fasta with 19 sequences of length 1407 232s read tree from file h3n2_na/h3n2_na_20.nwk with 19 leaves 232s 232s inferring ancestral sequences... 232s ...done. 232s 232s The TOTAL tree length is 1.311e-01 and 183 mutations were observed. 232s Of these 183 mutations, 232s - 148 occur 1 times 232s - 16 occur 2 times 232s - 1 occur 3 times 232s 232s Of the 1407 positions in the genome, 232s - 1237 were hit 0 times (expected 1235.40) 232s - 124 were hit 1 times (expected 160.68) 232s - 25 were hit 2 times (expected 10.45) 232s - 3 were hit 3 times (expected 0.45) 232s 232s log-likelihood difference to Poisson distribution with same mean: -1.226e+01 232s 232s 232s The ten most homoplasic mutations are: 232s mut multiplicity 232s G27A 3 232s A88G 2 232s A267G 2 232s G451R 2 232s G629A 2 232s C763T 2 232s G780A 2 232s C825T 2 232s C891A 2 232s C906T 2 233s homoplasy_scanning ok 234s 234s 0.00 -TreeAnc: set-up 234s 234s Inferred sequence evolution model (saved as 2024-11-13_ancestral/sequence_evolution_model.txt): 234s Substitution rate (mu): 1.0 234s 234s Equilibrium frequencies (pi_i): 234s A: 0.3062 234s C: 0.1925 234s G: 0.2336 234s T: 0.2577 234s -: 0.01 234s 234s Symmetrized rates from j->i (W_ij): 234s A C G T - 234s A 0 0.8311 2.7926 0.4496 1.0287 234s C 0.8311 0 0.577 2.8797 1.0535 234s G 2.7926 0.577 0 0.612 1.0437 234s T 0.4496 2.8797 0.612 0 1.0394 234s - 1.0287 1.0535 1.0437 1.0394 0 234s 234s Actual rates from j->i (Q_ij): 234s A C G T - 234s A 0 0.2545 0.8551 0.1377 0.315 234s C 0.16 0 0.1111 0.5543 0.2028 234s G 0.6523 0.1348 0 0.143 0.2438 234s T 0.1159 0.7421 0.1577 0 0.2678 234s - 0.0103 0.0106 0.0105 0.0104 0 234s 234s 234s --- alignment including ancestral nodes saved as 234s 2024-11-13_ancestral/ancestral_sequences.fasta 234s 234s --- tree saved in nexus format as 234s 2024-11-13_ancestral/annotated_tree.nexus 234s 234s --- tree saved in auspice json format as 234s 2024-11-13_ancestral/auspice_tree.json 234s 234s ancestral_reconstruction ok 236s 236s 0.00 -TreeAnc: set-up 236s 236s Attempting to parse dates... 236s Using column 'name' as name. This needs match the taxon names in the tree!! 236s Using column 'date' as date. 236s 236s 0.01 TreeTime.reroot: with method or node: least-squares 236s 236s 0.01 TreeTime.reroot: rerooting will ignore covariance and shared ancestry. 236s 236s 0.04 TreeTime.reroot: with method or node: least-squares 236s 236s 0.04 TreeTime.reroot: rerooting will ignore covariance and shared ancestry. 236s 236s 0.08 TreeTime.reroot: with method or node: least-squares 236s 236s 0.08 TreeTime.reroot: rerooting will ignore covariance and shared ancestry. 236s 236s Root-Tip-Regression: 236s --rate: 2.826e-03 236s --r^2: 0.98 236s 236s The R^2 value indicates the fraction of variation inroot-to-tip 236s distance explained by the sampling times.Higher values corresponds 236s more clock-like behavior (max 1.0). 236s 236s The rate is the slope of the best fit of the date tothe root-to-tip 236s distance and provides an estimate ofthe substitution rate. The rate 236s needs to be positive!Negative rates suggest an inappropriate root. 236s 236s 236s The estimated rate and tree correspond to a root date: 236s 236s --- root-date: 1996.75 236s 236s 236s --- new tree written to 236s 2024-11-13_clock/rerooted.newick 236s 236s --- wrote dates and root-to-tip distances to 236s 2024-11-13_clock/rtt.csv 236s 236s --- root-to-tip plot saved to 236s 2024-11-13_clock/root_to_tip_regression.pdf 236s temporal_signal ok 246s 246s Attempting to parse dates... 246s Using column 'name' as name. This needs match the taxon names in the tree!! 246s Using column 'date' as date. 246s 246s 0.00 -TreeAnc: set-up 246s 246s 0.17 TreeTime.reroot: with method or node: least-squares 246s 246s 0.17 TreeTime.reroot: rerooting will ignore covariance and shared ancestry. 246s 246s 0.21 TreeTime.reroot: with method or node: least-squares 246s 246s 0.21 TreeTime.reroot: rerooting will account for covariance and shared ancestry. 246s 246s 0.33 ###TreeTime.run: INITIAL ROUND 246s 246s 1.33 TreeTime.reroot: with method or node: least-squares 246s 246s 1.33 TreeTime.reroot: rerooting will account for covariance and shared ancestry. 246s 246s 1.36 ###TreeTime.run: rerunning timetree after rerooting 246s 246s 2.46 ###TreeTime.run: ITERATION 1 out of 2 iterations 246s 246s 2.46 DEPRECATION WARNING. TreeTime.resolve_polytomies: You are resolving 246s polytomies using the old 'greedy' mode. This is not well suited for large 246s polytomies. Stochastic resolution will become the default in future 246s versions. To switch now, rerun with the flag `--stochastic-resolve`. To 246s keep using the greedy method in the future, run with `--greedy-resolve` 246s 246s 3.49 ###TreeTime.run: ITERATION 2 out of 2 iterations 246s 246s 7.48 ###TreeTime.run: FINAL ROUND - confidence estimation via marginal 246s reconstruction 246s 246s Inferred sequence evolution model (saved as 2024-11-13_treetime/sequence_evolution_model.txt): 246s Substitution rate (mu): 1.0 246s 246s Equilibrium frequencies (pi_i): 246s A: 0.3088 246s C: 0.1897 246s G: 0.2335 246s T: 0.2581 246s -: 0.0099 246s 246s Symmetrized rates from j->i (W_ij): 246s A C G T - 246s A 0 0.7003 3.0669 0.2651 0.9742 246s C 0.7003 0 0.3354 3.399 0.999 246s G 3.0669 0.3354 0 0.4258 0.9892 246s T 0.2651 3.399 0.4258 0 0.9848 246s - 0.9742 0.999 0.9892 0.9848 0 246s 246s Actual rates from j->i (Q_ij): 246s A C G T - 246s A 0 0.2163 0.9472 0.0819 0.3009 246s C 0.1328 0 0.0636 0.6448 0.1895 246s G 0.716 0.0783 0 0.0994 0.2309 246s T 0.0684 0.8772 0.1099 0 0.2541 246s - 0.0097 0.0099 0.0098 0.0098 0 246s 246s 246s Inferred sequence evolution model (saved as 2024-11-13_treetime/molecular_clock.txt): 246s Root-Tip-Regression: 246s --rate: 2.753e-03 +/- 4.04e-04 (one std-dev) 246s --chi^2: 18.78 246s --r^2: 0.95 246s 246s --- saved tree as 246s 2024-11-13_treetime/timetree.pdf 246s 246s --- root-to-tip plot saved to 246s 2024-11-13_treetime/root_to_tip_regression.pdf 246s 246s --- alignment including ancestral nodes saved as 246s 2024-11-13_treetime/ancestral_sequences.fasta 246s 246s --- saved divergence times in 246s 2024-11-13_treetime/dates.tsv 246s 246s --- tree saved in nexus format as 246s 2024-11-13_treetime/timetree.nexus 246s 246s --- tree saved in auspice json format as 246s 2024-11-13_treetime/auspice_tree.json 246s 246s --- divergence tree saved in nexus format as 246s 2024-11-13_treetime/divergence_tree.nexus 246s 246s timetree_inference ok 247s /usr/lib/python3/dist-packages/treetime/wrappers.py:587: FutureWarning: Series.__getitem__ treating keys as positions is deprecated. In a future version, integer keys will always be treated as labels (consistent with DataFrame behavior). To access a value by position, use `ser.iloc[pos]` 247s weight_dict = {row[0]:row[1] for ri,row in tmp_weights.iterrows() if not np.isnan(row[1])} 248s Using column '#name' as taxon name. This needs to match the taxa in the tree! 248s Assigned discrete traits to 86 out of 86 taxa. 248s 248s 248s Completed mugration model inference of attribute 'country' for zika/zika.nwk 248s 248s Saved inferred mugration model as: 2024-11-13_mugration/GTR.txt 248s Saved annotated tree as: 2024-11-13_mugration/annotated_tree.nexus 248s ---Done! 248s 249s mugration ok 332s 332s Attempting to parse dates... 332s Using column 'strain' as name. This needs match the taxon names in the tree!! 332s Using column 'date' as date. 332s 332s 0.00 -TreeAnc: set-up 332s 332s 8.62 TreeTime.reroot: with method or node: least-squares 332s 332s 8.62 TreeTime.reroot: rerooting will ignore covariance and shared ancestry. 332s 332s 9.00 TreeTime.reroot: with method or node: least-squares 332s 332s 9.00 TreeTime.reroot: rerooting will ignore covariance and shared ancestry. 332s 332s 10.72 ###TreeTime.run: INITIAL ROUND 332s 332s 23.14 TreeTime.reroot: with method or node: least-squares 332s 332s 23.14 TreeTime.reroot: rerooting will ignore covariance and shared ancestry. 332s 332s 23.42 ###TreeTime.run: rerunning timetree after rerooting 332s 332s 37.51 ###TreeTime.run: ITERATION 1 out of 2 iterations 332s 332s 37.51 DEPRECATION WARNING. TreeTime.resolve_polytomies: You are resolving 332s polytomies using the old 'greedy' mode. This is not well suited for large 332s polytomies. Stochastic resolution will become the default in future 332s versions. To switch now, rerun with the flag `--stochastic-resolve`. To 332s keep using the greedy method in the future, run with `--greedy-resolve` 332s 332s 55.62 ###TreeTime.run: ITERATION 2 out of 2 iterations 332s 332s 72.62 TreeTime: the following tips have been marked as outliers. Their date 332s constraints were not used. Please remove them from the tree. Their dates 332s have been reset: 332s 332s 72.62 G22619, input date: [2011.0013698630137, 2011.9986301369863], apparent 332s date: 1979.23 332s 332s 72.62 G22625, input date: [2009.0013698630137, 2009.9986301369863], apparent 332s date: 2025.24 332s 332s 72.62 G22703, input date: [2004.0013661202186, 2004.9986338797814], apparent 332s date: 2027.50 332s 332s Inferred sequence evolution model (saved as 2024-11-13-0001_treetime/sequence_evolution_model.txt): 332s Substitution rate (mu): 1.0 332s 332s Equilibrium frequencies (pi_i): 332s A: 0.1669 332s C: 0.3286 332s G: 0.3273 332s T: 0.1669 332s -: 0.0103 332s 332s Symmetrized rates from j->i (W_ij): 332s A C G T - 332s A 0 0.7488 1.6554 0.3114 35.503 332s C 0.7488 0 0.3229 1.4088 35.7555 332s G 1.6554 0.3229 0 0.7518 49.1725 332s T 0.3114 1.4088 0.7518 0 32.0174 332s - 35.503 35.7555 49.1725 32.0174 0 332s 332s Actual rates from j->i (Q_ij): 332s A C G T - 332s A 0 0.125 0.2763 0.052 5.9258 332s C 0.246 0 0.1061 0.4629 11.7484 332s G 0.5419 0.1057 0 0.2461 16.0953 332s T 0.052 0.2351 0.1255 0 5.3431 332s - 0.366 0.3686 0.5069 0.3301 0 332s 332s 332s Inferred sequence evolution model (saved as 2024-11-13-0001_treetime/molecular_clock.txt): 332s Root-Tip-Regression: 332s --rate: 1.000e-07 332s --r^2: 0.29 332s 332s --- saved tree as 332s 2024-11-13-0001_treetime/timetree.pdf 332s 332s --- root-to-tip plot saved to 332s 2024-11-13-0001_treetime/root_to_tip_regression.pdf 332s Sites that were constant except for ambiguous bases were made constant 332s by TreeTime. This happened 1343 times. These sites are now excluded 332s from the VCF. 332s 332s ***WARNING: vcf_utils.py 332s 52 sites were found that had no alternative bases. If this data has 332s been run through TreeTime and contains ambiguous bases, try calling 332s get_tree_dict with var_ambigs=True to see if this clears the error. 332s Alternative causes: - Not all sequences in your alignment are in the 332s tree (if you are running TreeTime via commandline this is most likely) 332s - In TreeTime, can be caused by overwriting variants in tips with 332s small branch lengths (debug) These are the positions affected 332s (numbering starts at 0): 332s 46593, 52473, 165918, 304891, 662240, 954864, 954865, 954866, 954867, 332s 963561, 1046706, 1145470, 1321893, 1468105, 1468106, 1512661, 1704463, 332s 1716723, 1743968, 1951837, 2129868, 2215816, 2274543, 2515984, 332s 2580886, 2626512, 2626513, 2626599, 2686156, 2736331, 2823901, 332s 2869282, 2894207, 2911378, 3047997, 3160385, 3314001, 3321447, 332s 3336505, 3461793, 3490408, 3618189, 3734466, 3764813, 3828626, 332s 3842630, 3894439, 3912292, 3913650, 3956227, 4149358, 4183687 332s 332s --- alignment including ancestral nodes saved as 332s 2024-11-13-0001_treetime/ancestral_sequences.vcf 332s 332s --- saved divergence times in 332s 2024-11-13-0001_treetime/dates.tsv 332s 332s --- tree saved in nexus format as 332s 2024-11-13-0001_treetime/timetree.nexus 332s 332s --- tree saved in auspice json format as 332s 2024-11-13-0001_treetime/auspice_tree.json 332s 332s --- divergence tree saved in nexus format as 332s 2024-11-13-0001_treetime/divergence_tree.nexus 332s 332s --- saved detected outliers as 2024-11-13-0001_treetime/outliers.tsv 332s timetree_inference on vcf data ok 516s 516s Attempting to parse dates... 516s Using column 'name' as name. This needs match the taxon names in the tree!! 516s Using column 'date' as date. 516s 516s 0.00 -TreeAnc: set-up 516s 516s 5.18 -WARNING: character U is unknown. Treating it as missing information 516s 516s 19.82 TreeTime.reroot: with method or node: least-squares 516s 516s 19.82 TreeTime.reroot: rerooting will ignore covariance and shared ancestry. 516s 516s 20.58 TreeTime.reroot: with method or node: least-squares 516s 516s 20.59 TreeTime.reroot: rerooting will ignore covariance and shared ancestry. 516s 516s 29.07 ###TreeTime.run: INITIAL ROUND 516s 516s 48.25 TreeTime.reroot: with method or node: least-squares 516s 516s 48.25 TreeTime.reroot: rerooting will ignore covariance and shared ancestry. 516s 516s 48.95 ###TreeTime.run: rerunning timetree after rerooting 516s 516s 71.11 ###TreeTime.run: ITERATION 1 out of 2 iterations 516s 516s 72.46 DEPRECATION WARNING. TreeTime.resolve_polytomies: You are resolving 516s polytomies using the old 'greedy' mode. This is not well suited for large 516s polytomies. Stochastic resolution will become the default in future 516s versions. To switch now, rerun with the flag `--stochastic-resolve`. To 516s keep using the greedy method in the future, run with `--greedy-resolve` 516s 516s 105.93 ###TreeTime.run: ITERATION 2 out of 2 iterations 516s 516s 175.28 TreeTime: the following tips have been marked as outliers. Their date 516s constraints were not used. Please remove them from the tree. Their dates 516s have been reset: 516s 516s 175.28 NZG_0393, input date: 2016.24, apparent date: 2015.16 516s 516s 175.28 NZG_0422, input date: 2016.25, apparent date: 2015.16 516s 516s 175.28 NZG_0358, input date: 2016.22, apparent date: 2015.16 516s 516s 175.28 NZG_0381, input date: 2016.23, apparent date: 2015.11 516s 516s 175.28 EM_NG_2016_029417, input date: 2016.22, apparent date: 2015.11 516s 516s 175.28 EM_NG_2016_029364, input date: 2016.21, apparent date: 2015.11 516s 516s 175.28 EM_NG_2016_029366, input date: 2016.21, apparent date: 2015.11 516s 516s 175.28 2607_C2_12916_EMLH, input date: 2015.32, apparent date: 2015.49 516s 516s 175.28 2607_C2_12855_EMLH, input date: 2015.28, apparent date: 2015.49 516s 516s 175.28 1708_C1_13031_EMLH, input date: 2015.38, apparent date: 2015.59 516s 516s 175.28 1507_C1_18650_EMLH, input date: 2015.52, apparent date: 2015.87 516s 516s 175.28 1507_C1_18706_EMLH, input date: 2015.53, apparent date: 2015.87 516s 516s 175.28 0208_C1_MK10173, input date: 2015.58, apparent date: 2015.87 516s 516s 175.28 2208_C2_18659R_EMLH, input date: 2015.52, apparent date: 2016.00 516s 516s 175.28 1507_C1_13268_EMLH, input date: 2015.47, apparent date: 2015.94 516s 516s 175.28 1507_C1_18660_EMLH, input date: 2015.52, apparent date: 2015.94 516s 516s 175.28 1507_C1_18647_EMLH, input date: 2015.52, apparent date: 2015.80 516s 516s 175.28 2208_C2_18642R_EMLH, input date: 2015.51, apparent date: 2015.94 516s 516s 175.28 1507_C1_18636_EMLH, input date: 2015.51, apparent date: 2016.00 516s 516s 175.28 2208_C2_18687R_EMLH, input date: 2015.53, apparent date: 2016.00 516s 516s Inferred sequence evolution model (saved as 2024-11-13-0002_treetime/sequence_evolution_model.txt): 516s Substitution rate (mu): 1.0 516s 516s Equilibrium frequencies (pi_i): 516s A: 0.3139 516s C: 0.2144 516s G: 0.1978 516s T: 0.2639 516s -: 0.01 516s 516s Symmetrized rates from j->i (W_ij): 516s A C G T - 516s A 0 0.3826 2.5279 0.2294 6.7953 516s C 0.3826 0 0.1691 3.5597 12.1802 516s G 2.5279 0.1691 0 0.3724 5.2952 516s T 0.2294 3.5597 0.3724 0 27.7409 516s - 6.7953 12.1802 5.2952 27.7409 0 516s 516s Actual rates from j->i (Q_ij): 516s A C G T - 516s A 0 0.1201 0.7935 0.072 2.1329 516s C 0.0821 0 0.0363 0.7633 2.6119 516s G 0.5001 0.0335 0 0.0737 1.0476 516s T 0.0605 0.9394 0.0983 0 7.3206 516s - 0.0676 0.1212 0.0527 0.276 0 516s 516s 516s Inferred sequence evolution model (saved as 2024-11-13-0002_treetime/molecular_clock.txt): 516s Root-Tip-Regression: 516s --rate: 7.885e-04 516s --r^2: 0.80 516s 516s Inferred coalescent model 516s Skyline assuming 100.0 gen/year and approximate confidence bounds (+/- 2.000000 standard deviations of the LH) 516s date N_e lower upper 516s 2014.122 2.680e+01 1.180e+01 6.086e+01 516s 2014.211 6.309e+01 4.201e+01 9.476e+01 516s 2014.300 1.034e+02 6.149e+01 1.739e+02 516s 2014.389 1.046e+02 7.071e+01 1.547e+02 516s 2014.478 3.629e+02 2.520e+02 5.226e+02 516s 2014.566 4.749e+02 3.194e+02 7.061e+02 516s 2014.655 8.331e+02 5.654e+02 1.228e+03 516s 2014.744 2.286e+03 1.461e+03 3.576e+03 516s 2014.833 1.362e+03 8.055e+02 2.302e+03 516s 2014.922 9.543e+02 5.760e+02 1.581e+03 516s 2015.011 5.935e+02 3.641e+02 9.676e+02 516s 2015.099 5.757e+02 3.641e+02 9.102e+02 516s 2015.188 4.333e+02 2.722e+02 6.896e+02 516s 2015.277 3.068e+02 1.875e+02 5.020e+02 516s 2015.366 2.680e+02 1.700e+02 4.225e+02 516s 2015.455 1.619e+02 9.987e+01 2.625e+02 516s 2015.544 1.243e+02 7.152e+01 2.162e+02 516s 2015.632 1.467e+02 8.741e+01 2.464e+02 516s 2015.721 7.820e+01 4.127e+01 1.482e+02 516s 2015.810 2.334e+01 8.765e+00 6.216e+01 516s 516s --- written skyline to 2024-11-13-0002_treetime/skyline.tsv 516s 516s --- saved tree as 516s 2024-11-13-0002_treetime/timetree.pdf 516s 516s --- root-to-tip plot saved to 516s 2024-11-13-0002_treetime/root_to_tip_regression.pdf 516s 516s --- alignment including ancestral nodes saved as 516s 2024-11-13-0002_treetime/ancestral_sequences.fasta 516s 516s --- saved divergence times in 516s 2024-11-13-0002_treetime/dates.tsv 516s 516s --- tree saved in nexus format as 516s 2024-11-13-0002_treetime/timetree.nexus 516s 516s --- tree saved in auspice json format as 516s 2024-11-13-0002_treetime/auspice_tree.json 516s 516s --- divergence tree saved in nexus format as 516s 2024-11-13-0002_treetime/divergence_tree.nexus 516s 516s --- saved detected outliers as 2024-11-13-0002_treetime/outliers.tsv 516s skyline approximation ok 569s 569s Attempting to parse dates... 569s Using column 'name' as name. This needs match the taxon names in the tree!! 569s Using column 'date' as date. 569s 569s 0.00 -TreeAnc: set-up 569s 569s 0.11 TreeTime.reroot: with method or node: least-squares 569s 569s 0.11 TreeTime.reroot: rerooting will ignore covariance and shared ancestry. 569s 569s 1.13 TreeTime.reroot: with method or node: least-squares 569s 569s 1.13 TreeTime.reroot: rerooting will ignore covariance and shared ancestry. 569s 569s 1.85 ###TreeTime.run: INITIAL ROUND 569s 569s 16.13 TreeTime.reroot: with method or node: least-squares 569s 569s 16.14 TreeTime.reroot: rerooting will ignore covariance and shared ancestry. 569s 569s 17.00 ###TreeTime.run: rerunning timetree after rerooting 569s 569s 33.88 ###TreeTime.run: ITERATION 1 out of 2 iterations 569s 569s 33.88 DEPRECATION WARNING. TreeTime.resolve_polytomies: You are resolving 569s polytomies using the old 'greedy' mode. This is not well suited for large 569s polytomies. Stochastic resolution will become the default in future 569s versions. To switch now, rerun with the flag `--stochastic-resolve`. To 569s keep using the greedy method in the future, run with `--greedy-resolve` 569s 569s 48.16 ###TreeTime.run: CONVERGED 569s 569s 48.16 TreeTime: the following tips have been marked as outliers. Their date 569s constraints were not used. Please remove them from the tree. Their dates 569s have been reset: 569s 569s 48.16 NZG_0393, input date: 2016.24, apparent date: 2015.26 569s 569s 48.16 NZG_0422, input date: 2016.25, apparent date: 2015.26 569s 569s 48.16 NZG_0358, input date: 2016.22, apparent date: 2015.26 569s 569s 48.16 EM_NG_2016_029366, input date: 2016.21, apparent date: 2015.19 569s 569s 48.16 EM_NG_2016_029364, input date: 2016.21, apparent date: 2015.19 569s 569s 48.16 EM_NG_2016_029417, input date: 2016.22, apparent date: 2015.19 569s 569s 48.16 NZG_0381, input date: 2016.23, apparent date: 2015.19 569s 569s 48.16 1708_C1_13031_EMLH, input date: 2015.38, apparent date: 2015.40 569s 569s 48.16 1507_C1_18660_EMLH, input date: 2015.52, apparent date: 2015.81 569s 569s 48.16 2208_C2_18642R_EMLH, input date: 2015.51, apparent date: 2015.81 569s 569s 48.16 1507_C1_18636_EMLH, input date: 2015.51, apparent date: 2015.87 569s 569s 48.16 2208_C2_18687R_EMLH, input date: 2015.53, apparent date: 2015.87 569s 569s 48.16 1507_C1_18650_EMLH, input date: 2015.52, apparent date: 2015.74 569s 569s 48.16 1507_C1_13268_EMLH, input date: 2015.47, apparent date: 2015.81 569s 569s 48.16 1507_C1_18647_EMLH, input date: 2015.52, apparent date: 2015.68 569s 569s 48.16 0208_C1_MK10173, input date: 2015.58, apparent date: 2015.74 569s 569s 48.16 1507_C1_18706_EMLH, input date: 2015.53, apparent date: 2015.74 569s 569s 48.16 2208_C2_18659R_EMLH, input date: 2015.52, apparent date: 2015.87 569s 569s Inferred sequence evolution model (saved as 2024-11-13-0003_treetime/sequence_evolution_model.txt): 569s Substitution rate (mu): 1.0 569s 569s Equilibrium frequencies (pi_i): 569s A: 0.2 569s C: 0.2 569s G: 0.2 569s T: 0.2 569s -: 0.2 569s 569s Symmetrized rates from j->i (W_ij): 569s A C G T - 569s A 0 1.25 1.25 1.25 1.25 569s C 1.25 0 1.25 1.25 1.25 569s G 1.25 1.25 0 1.25 1.25 569s T 1.25 1.25 1.25 0 1.25 569s - 1.25 1.25 1.25 1.25 0 569s 569s Actual rates from j->i (Q_ij): 569s A C G T - 569s A 0 0.25 0.25 0.25 0.25 569s C 0.25 0 0.25 0.25 0.25 569s G 0.25 0.25 0 0.25 0.25 569s T 0.25 0.25 0.25 0 0.25 569s - 0.25 0.25 0.25 0.25 0 569s 569s 569s Inferred sequence evolution model (saved as 2024-11-13-0003_treetime/molecular_clock.txt): 569s Root-Tip-Regression: 569s --rate: 8.047e-04 569s --r^2: 0.79 569s 569s --- saved tree as 569s 2024-11-13-0003_treetime/timetree.pdf 569s 569s --- root-to-tip plot saved to 569s 2024-11-13-0003_treetime/root_to_tip_regression.pdf 569s --- saved divergence times in 569s 2024-11-13-0003_treetime/dates.tsv 569s 569s --- tree saved in nexus format as 569s 2024-11-13-0003_treetime/timetree.nexus 569s 569s --- tree saved in auspice json format as 569s 2024-11-13-0003_treetime/auspice_tree.json 569s 569s --- divergence tree saved in nexus format as 569s 2024-11-13-0003_treetime/divergence_tree.nexus 569s 569s --- saved detected outliers as 2024-11-13-0003_treetime/outliers.tsv 569s sequence length only ok 569s All tests passed 570s autopkgtest [11:24:56]: test run-unit-test: -----------------------] 570s autopkgtest [11:24:56]: test run-unit-test: - - - - - - - - - - results - - - - - - - - - - 570s run-unit-test PASS 571s autopkgtest [11:24:57]: test autodep8-python3: preparing testbed 716s autopkgtest [11:27:22]: testbed dpkg architecture: ppc64el 717s autopkgtest [11:27:23]: testbed apt version: 2.9.8 717s autopkgtest [11:27:23]: @@@@@@@@@@@@@@@@@@@@ test bed setup 718s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease [73.9 kB] 718s Get:2 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse Sources [15.3 kB] 718s Get:3 http://ftpmaster.internal/ubuntu plucky-proposed/main Sources [76.4 kB] 718s Get:4 http://ftpmaster.internal/ubuntu plucky-proposed/universe Sources [849 kB] 718s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/restricted Sources [7016 B] 718s Get:6 http://ftpmaster.internal/ubuntu plucky-proposed/main ppc64el Packages [86.2 kB] 718s Get:7 http://ftpmaster.internal/ubuntu plucky-proposed/universe ppc64el Packages [588 kB] 718s Get:8 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse ppc64el Packages [19.6 kB] 719s Fetched 1715 kB in 1s (1656 kB/s) 719s Reading package lists... 721s Reading package lists... 722s Building dependency tree... 722s Reading state information... 722s Calculating upgrade... 722s The following NEW packages will be installed: 722s python3.13-gdbm 722s The following packages will be upgraded: 722s libpython3-stdlib python3 python3-gdbm python3-minimal 722s 4 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. 722s Need to get 102 kB of archives. 722s After this operation, 141 kB of additional disk space will be used. 722s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed/main ppc64el python3-minimal ppc64el 3.12.7-1 [27.4 kB] 722s Get:2 http://ftpmaster.internal/ubuntu plucky-proposed/main ppc64el python3 ppc64el 3.12.7-1 [24.0 kB] 722s Get:3 http://ftpmaster.internal/ubuntu plucky-proposed/main ppc64el libpython3-stdlib ppc64el 3.12.7-1 [10.0 kB] 722s Get:4 http://ftpmaster.internal/ubuntu plucky/main ppc64el python3.13-gdbm ppc64el 3.13.0-2 [31.5 kB] 722s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/main ppc64el python3-gdbm ppc64el 3.12.7-1 [8640 B] 723s Fetched 102 kB in 0s (287 kB/s) 723s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 73767 files and directories currently installed.) 723s Preparing to unpack .../python3-minimal_3.12.7-1_ppc64el.deb ... 723s Unpacking python3-minimal (3.12.7-1) over (3.12.6-0ubuntu1) ... 723s Setting up python3-minimal (3.12.7-1) ... 724s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 73767 files and directories currently installed.) 724s Preparing to unpack .../python3_3.12.7-1_ppc64el.deb ... 724s Unpacking python3 (3.12.7-1) over (3.12.6-0ubuntu1) ... 724s Preparing to unpack .../libpython3-stdlib_3.12.7-1_ppc64el.deb ... 724s Unpacking libpython3-stdlib:ppc64el (3.12.7-1) over (3.12.6-0ubuntu1) ... 724s Selecting previously unselected package python3.13-gdbm. 724s Preparing to unpack .../python3.13-gdbm_3.13.0-2_ppc64el.deb ... 724s Unpacking python3.13-gdbm (3.13.0-2) ... 724s Preparing to unpack .../python3-gdbm_3.12.7-1_ppc64el.deb ... 724s Unpacking python3-gdbm:ppc64el (3.12.7-1) over (3.12.6-1ubuntu1) ... 724s Setting up python3.13-gdbm (3.13.0-2) ... 724s Setting up libpython3-stdlib:ppc64el (3.12.7-1) ... 724s Setting up python3 (3.12.7-1) ... 724s Setting up python3-gdbm:ppc64el (3.12.7-1) ... 724s Processing triggers for man-db (2.12.1-3) ... 726s Reading package lists... 726s Building dependency tree... 726s Reading state information... 726s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 727s Hit:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease 727s Hit:2 http://ftpmaster.internal/ubuntu plucky InRelease 727s Hit:3 http://ftpmaster.internal/ubuntu plucky-updates InRelease 727s Hit:4 http://ftpmaster.internal/ubuntu plucky-security InRelease 728s Reading package lists... 728s Reading package lists... 729s Building dependency tree... 729s Reading state information... 729s Calculating upgrade... 729s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 729s Reading package lists... 729s Building dependency tree... 729s Reading state information... 730s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 734s Reading package lists... 735s Building dependency tree... 735s Reading state information... 735s Starting pkgProblemResolver with broken count: 0 735s Starting 2 pkgProblemResolver with broken count: 0 735s Done 736s The following additional packages will be installed: 736s blt fontconfig-config fonts-dejavu-core fonts-dejavu-mono fonts-lyx 736s fonts-urw-base35 libblas3 libcairo2 libdeflate0 libfontconfig1 libfontenc1 736s libgfortran5 libgomp1 libgraphite2-3 libharfbuzz0b libimagequant0 libjbig0 736s libjpeg-turbo8 libjpeg8 libjs-jquery libjs-jquery-ui liblapack3 liblbfgsb0 736s liblcms2-2 liblerc4 libopenjp2-7 libpixman-1-0 libpython3.13-minimal 736s libpython3.13-stdlib libqhull-r8.0 libraqm0 libsharpyuv0 libtcl8.6 libtiff6 736s libtk8.6 libwebp7 libwebpdemux2 libwebpmux3 libxcb-render0 libxcb-shm0 736s libxft2 libxrender1 libxslt1.1 libxss1 python-matplotlib-data python3-all 736s python3-appdirs python3-biopython python3-brotli python3-cairo 736s python3-contourpy python3-cycler python3-dateutil python3-decorator 736s python3-fonttools python3-freetype python3-fs python3-kiwisolver 736s python3-lxml python3-lz4 python3-matplotlib python3-mpmath python3-numpy 736s python3-packaging python3-pandas python3-pandas-lib python3-pil 736s python3-pil.imagetk python3-reportlab python3-rlpycairo python3-scipy 736s python3-six python3-sympy python3-tk python3-treetime python3-tz 736s python3-ufolib2 python3.12-tk python3.13 python3.13-minimal python3.13-tk 736s sgml-base tk8.6-blt2.5 unicode-data w3c-sgml-lib x11-common xfonts-encodings 736s xfonts-utils xml-core 736s Suggested packages: 736s blt-demo fonts-freefont-otf | fonts-freefont-ttf fonts-texgyre 736s libjs-jquery-ui-docs liblcms2-utils tcl8.6 tk8.6 bwa clustalo clustalw 736s dialign dssp emboss fasttree mafft muscle3 phylip phyml prank probcons 736s python3-mysqldb python3-mmtf python3-rdflib python3-psycopg2 raxml samtools 736s t-coffee wise python-cycler-doc python-lxml-doc cm-super-minimal dvipng 736s ffmpeg fonts-staypuft ghostscript gir1.2-gtk-3.0 inkscape ipython3 736s librsvg2-common python-matplotlib-doc python3-cairocffi python3-gi-cairo 736s python3-gobject python3-pyqt5 python3-sip python3-tornado 736s texlive-extra-utils texlive-latex-extra python-mpmath-doc python3-gmpy2 gcc 736s gfortran python-numpy-doc python3-dev python3-pytest python-pandas-doc 736s python3-statsmodels python-pil-doc pdf-viewer python3-egenix-mxtexttools 736s python-reportlab-doc rl-accel rl-renderpm python-scipy-doc 736s texlive-fonts-extra python-sympy-doc tix python3-tk-dbg python3.13-venv 736s python3.13-doc binfmt-support sgml-base-doc debhelper 736s Recommended packages: 736s javascript-common python-biopython-doc ncbi-blast+ python3-bs4 736s python3-cssselect python3-html5lib python3-bottleneck python3-numexpr 736s python3-odf python3-openpyxl python3-tables python3-olefile 736s fonts-dejavu-extra g++ | c++-compiler isympy-common 736s The following NEW packages will be installed: 736s autopkgtest-satdep blt fontconfig-config fonts-dejavu-core fonts-dejavu-mono 736s fonts-lyx fonts-urw-base35 libblas3 libcairo2 libdeflate0 libfontconfig1 736s libfontenc1 libgfortran5 libgomp1 libgraphite2-3 libharfbuzz0b 736s libimagequant0 libjbig0 libjpeg-turbo8 libjpeg8 libjs-jquery libjs-jquery-ui 736s liblapack3 liblbfgsb0 liblcms2-2 liblerc4 libopenjp2-7 libpixman-1-0 736s libpython3.13-minimal libpython3.13-stdlib libqhull-r8.0 libraqm0 736s libsharpyuv0 libtcl8.6 libtiff6 libtk8.6 libwebp7 libwebpdemux2 libwebpmux3 736s libxcb-render0 libxcb-shm0 libxft2 libxrender1 libxslt1.1 libxss1 736s python-matplotlib-data python3-all python3-appdirs python3-biopython 736s python3-brotli python3-cairo python3-contourpy python3-cycler 736s python3-dateutil python3-decorator python3-fonttools python3-freetype 736s python3-fs python3-kiwisolver python3-lxml python3-lz4 python3-matplotlib 736s python3-mpmath python3-numpy python3-packaging python3-pandas 736s python3-pandas-lib python3-pil python3-pil.imagetk python3-reportlab 736s python3-rlpycairo python3-scipy python3-six python3-sympy python3-tk 736s python3-treetime python3-tz python3-ufolib2 python3.12-tk python3.13 736s python3.13-minimal python3.13-tk sgml-base tk8.6-blt2.5 unicode-data 736s w3c-sgml-lib x11-common xfonts-encodings xfonts-utils xml-core 736s 0 upgraded, 90 newly installed, 0 to remove and 0 not upgraded. 736s Need to get 91.6 MB/91.6 MB of archives. 736s After this operation, 381 MB of additional disk space will be used. 736s Get:1 /tmp/autopkgtest.VYNBiO/2-autopkgtest-satdep.deb autopkgtest-satdep ppc64el 0 [716 B] 736s Get:2 http://ftpmaster.internal/ubuntu plucky/main ppc64el libpython3.13-minimal ppc64el 3.13.0-2 [881 kB] 737s Get:3 http://ftpmaster.internal/ubuntu plucky/main ppc64el python3.13-minimal ppc64el 3.13.0-2 [2302 kB] 738s Get:4 http://ftpmaster.internal/ubuntu plucky/main ppc64el sgml-base all 1.31 [11.4 kB] 738s Get:5 http://ftpmaster.internal/ubuntu plucky/main ppc64el libtcl8.6 ppc64el 8.6.15+dfsg-2 [1201 kB] 738s Get:6 http://ftpmaster.internal/ubuntu plucky/main ppc64el fonts-dejavu-mono all 2.37-8 [502 kB] 738s Get:7 http://ftpmaster.internal/ubuntu plucky/main ppc64el fonts-dejavu-core all 2.37-8 [835 kB] 738s Get:8 http://ftpmaster.internal/ubuntu plucky/main ppc64el libfontenc1 ppc64el 1:1.1.8-1build1 [15.8 kB] 738s Get:9 http://ftpmaster.internal/ubuntu plucky/main ppc64el x11-common all 1:7.7+23ubuntu3 [21.7 kB] 738s Get:10 http://ftpmaster.internal/ubuntu plucky/main ppc64el xfonts-encodings all 1:1.0.5-0ubuntu2 [578 kB] 738s Get:11 http://ftpmaster.internal/ubuntu plucky/main ppc64el xfonts-utils ppc64el 1:7.7+7 [114 kB] 738s Get:12 http://ftpmaster.internal/ubuntu plucky/main ppc64el fonts-urw-base35 all 20200910-8 [11.0 MB] 739s Get:13 http://ftpmaster.internal/ubuntu plucky/main ppc64el fontconfig-config ppc64el 2.15.0-1.1ubuntu2 [37.4 kB] 739s Get:14 http://ftpmaster.internal/ubuntu plucky/main ppc64el libfontconfig1 ppc64el 2.15.0-1.1ubuntu2 [190 kB] 739s Get:15 http://ftpmaster.internal/ubuntu plucky/main ppc64el libxrender1 ppc64el 1:0.9.10-1.1build1 [23.1 kB] 739s Get:16 http://ftpmaster.internal/ubuntu plucky/main ppc64el libxft2 ppc64el 2.3.6-1build1 [61.5 kB] 740s Get:17 http://ftpmaster.internal/ubuntu plucky/main ppc64el libxss1 ppc64el 1:1.2.3-1build3 [7980 B] 740s Get:18 http://ftpmaster.internal/ubuntu plucky/main ppc64el libtk8.6 ppc64el 8.6.15-1 [942 kB] 740s Get:19 http://ftpmaster.internal/ubuntu plucky/main ppc64el tk8.6-blt2.5 ppc64el 2.5.3+dfsg-7build1 [784 kB] 740s Get:20 http://ftpmaster.internal/ubuntu plucky/main ppc64el blt ppc64el 2.5.3+dfsg-7build1 [4840 B] 740s Get:21 http://ftpmaster.internal/ubuntu plucky/universe ppc64el fonts-lyx all 2.4.2.1-1 [171 kB] 740s Get:22 http://ftpmaster.internal/ubuntu plucky/main ppc64el libblas3 ppc64el 3.12.0-3build2 [222 kB] 740s Get:23 http://ftpmaster.internal/ubuntu plucky/main ppc64el libpixman-1-0 ppc64el 0.44.0-3 [334 kB] 740s Get:24 http://ftpmaster.internal/ubuntu plucky/main ppc64el libxcb-render0 ppc64el 1.17.0-2 [17.2 kB] 740s Get:25 http://ftpmaster.internal/ubuntu plucky/main ppc64el libxcb-shm0 ppc64el 1.17.0-2 [5980 B] 740s Get:26 http://ftpmaster.internal/ubuntu plucky/main ppc64el libcairo2 ppc64el 1.18.2-2 [747 kB] 740s Get:27 http://ftpmaster.internal/ubuntu plucky/main ppc64el libdeflate0 ppc64el 1.22-1 [63.3 kB] 740s Get:28 http://ftpmaster.internal/ubuntu plucky/main ppc64el libgfortran5 ppc64el 14.2.0-8ubuntu1 [571 kB] 740s Get:29 http://ftpmaster.internal/ubuntu plucky/main ppc64el libgomp1 ppc64el 14.2.0-8ubuntu1 [161 kB] 740s Get:30 http://ftpmaster.internal/ubuntu plucky/main ppc64el libgraphite2-3 ppc64el 1.3.14-2ubuntu1 [84.6 kB] 740s Get:31 http://ftpmaster.internal/ubuntu plucky/main ppc64el libharfbuzz0b ppc64el 10.0.1-1 [596 kB] 740s Get:32 http://ftpmaster.internal/ubuntu plucky/main ppc64el libimagequant0 ppc64el 2.18.0-1build1 [43.2 kB] 740s Get:33 http://ftpmaster.internal/ubuntu plucky/main ppc64el libjpeg-turbo8 ppc64el 2.1.5-2ubuntu2 [219 kB] 740s Get:34 http://ftpmaster.internal/ubuntu plucky/main ppc64el libjpeg8 ppc64el 8c-2ubuntu11 [2148 B] 740s Get:35 http://ftpmaster.internal/ubuntu plucky/main ppc64el libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [328 kB] 740s Get:36 http://ftpmaster.internal/ubuntu plucky/universe ppc64el libjs-jquery-ui all 1.13.2+dfsg-1 [252 kB] 740s Get:37 http://ftpmaster.internal/ubuntu plucky/main ppc64el liblapack3 ppc64el 3.12.0-3build2 [2806 kB] 740s Get:38 http://ftpmaster.internal/ubuntu plucky/universe ppc64el liblbfgsb0 ppc64el 3.0+dfsg.4-1build1 [33.0 kB] 740s Get:39 http://ftpmaster.internal/ubuntu plucky/main ppc64el liblcms2-2 ppc64el 2.16-2 [243 kB] 740s Get:40 http://ftpmaster.internal/ubuntu plucky/main ppc64el liblerc4 ppc64el 4.0.0+ds-4ubuntu2 [270 kB] 740s Get:41 http://ftpmaster.internal/ubuntu plucky/main ppc64el libpython3.13-stdlib ppc64el 3.13.0-2 [2148 kB] 740s Get:42 http://ftpmaster.internal/ubuntu plucky/universe ppc64el libqhull-r8.0 ppc64el 2020.2-6build1 [225 kB] 740s Get:43 http://ftpmaster.internal/ubuntu plucky/main ppc64el libraqm0 ppc64el 0.10.1-1build1 [19.4 kB] 740s Get:44 http://ftpmaster.internal/ubuntu plucky/main ppc64el libsharpyuv0 ppc64el 1.4.0-0.1 [22.0 kB] 740s Get:45 http://ftpmaster.internal/ubuntu plucky/main ppc64el libjbig0 ppc64el 2.1-6.1ubuntu2 [35.9 kB] 740s Get:46 http://ftpmaster.internal/ubuntu plucky/main ppc64el libwebp7 ppc64el 1.4.0-0.1 [309 kB] 740s Get:47 http://ftpmaster.internal/ubuntu plucky/main ppc64el libtiff6 ppc64el 4.5.1+git230720-4ubuntu4 [272 kB] 740s Get:48 http://ftpmaster.internal/ubuntu plucky/main ppc64el libwebpdemux2 ppc64el 1.4.0-0.1 [14.1 kB] 740s Get:49 http://ftpmaster.internal/ubuntu plucky/main ppc64el libwebpmux3 ppc64el 1.4.0-0.1 [31.4 kB] 740s Get:50 http://ftpmaster.internal/ubuntu plucky/main ppc64el libxslt1.1 ppc64el 1.1.39-0exp1ubuntu1 [191 kB] 740s Get:51 http://ftpmaster.internal/ubuntu plucky/universe ppc64el python-matplotlib-data all 3.8.3-3 [2928 kB] 740s Get:52 http://ftpmaster.internal/ubuntu plucky/main ppc64el python3.13 ppc64el 3.13.0-2 [719 kB] 740s Get:53 http://ftpmaster.internal/ubuntu plucky-proposed/main ppc64el python3-all ppc64el 3.12.7-1 [888 B] 740s Get:54 http://ftpmaster.internal/ubuntu plucky/main ppc64el python3-appdirs all 1.4.4-4 [10.9 kB] 740s Get:55 http://ftpmaster.internal/ubuntu plucky/main ppc64el python3-numpy ppc64el 1:1.26.4+ds-11build1 [4434 kB] 741s Get:56 http://ftpmaster.internal/ubuntu plucky/main ppc64el python3.12-tk ppc64el 3.12.7-3 [116 kB] 741s Get:57 http://ftpmaster.internal/ubuntu plucky/main ppc64el python3.13-tk ppc64el 3.13.0-2 [107 kB] 741s Get:58 http://ftpmaster.internal/ubuntu plucky-proposed/main ppc64el python3-tk ppc64el 3.12.7-1 [9752 B] 741s Get:59 http://ftpmaster.internal/ubuntu plucky/universe ppc64el python3-pil.imagetk ppc64el 10.4.0-1ubuntu1 [9810 B] 741s Get:60 http://ftpmaster.internal/ubuntu plucky/main ppc64el libopenjp2-7 ppc64el 2.5.0-2ubuntu1 [246 kB] 741s Get:61 http://ftpmaster.internal/ubuntu plucky/main ppc64el python3-pil ppc64el 10.4.0-1ubuntu1 [581 kB] 741s Get:62 http://ftpmaster.internal/ubuntu plucky/main ppc64el python3-cairo ppc64el 1.26.1-2 [129 kB] 741s Get:63 http://ftpmaster.internal/ubuntu plucky/universe ppc64el python3-freetype all 2.5.1-1 [92.3 kB] 741s Get:64 http://ftpmaster.internal/ubuntu plucky/universe ppc64el python3-rlpycairo all 0.3.0-3 [9130 B] 741s Get:65 http://ftpmaster.internal/ubuntu plucky/universe ppc64el python3-reportlab all 4.2.5-1 [1107 kB] 741s Get:66 http://ftpmaster.internal/ubuntu plucky/main ppc64el xml-core all 0.19 [20.3 kB] 741s Get:67 http://ftpmaster.internal/ubuntu plucky/universe ppc64el w3c-sgml-lib all 1.3-3 [280 kB] 741s Get:68 http://ftpmaster.internal/ubuntu plucky/universe ppc64el python3-biopython ppc64el 1.84+dfsg-4 [1738 kB] 741s Get:69 http://ftpmaster.internal/ubuntu plucky/universe ppc64el python3-brotli ppc64el 1.1.0-2build2 [413 kB] 741s Get:70 http://ftpmaster.internal/ubuntu plucky/universe ppc64el python3-contourpy ppc64el 1.3.0-2 [217 kB] 741s Get:71 http://ftpmaster.internal/ubuntu plucky/universe ppc64el python3-cycler all 0.12.1-1 [9716 B] 741s Get:72 http://ftpmaster.internal/ubuntu plucky/main ppc64el python3-six all 1.16.0-7 [13.1 kB] 741s Get:73 http://ftpmaster.internal/ubuntu plucky/main ppc64el python3-dateutil all 2.9.0-2 [80.3 kB] 741s Get:74 http://ftpmaster.internal/ubuntu plucky/main ppc64el python3-decorator all 5.1.1-5 [10.1 kB] 741s Get:75 http://ftpmaster.internal/ubuntu plucky/universe ppc64el python3-scipy ppc64el 1.13.1-5 [18.3 MB] 741s Get:76 http://ftpmaster.internal/ubuntu plucky/universe ppc64el python3-ufolib2 all 0.16.1+dfsg1-1 [33.4 kB] 741s Get:77 http://ftpmaster.internal/ubuntu plucky/universe ppc64el python3-mpmath all 1.3.0-1 [425 kB] 741s Get:78 http://ftpmaster.internal/ubuntu plucky/universe ppc64el python3-sympy all 1.13.3-1 [4228 kB] 741s Get:79 http://ftpmaster.internal/ubuntu plucky/main ppc64el python3-tz all 2024.1-2 [31.4 kB] 741s Get:80 http://ftpmaster.internal/ubuntu plucky/universe ppc64el python3-fs all 2.4.16-4 [91.3 kB] 741s Get:81 http://ftpmaster.internal/ubuntu plucky/main ppc64el python3-lxml ppc64el 5.3.0-1 [1354 kB] 741s Get:82 http://ftpmaster.internal/ubuntu plucky/universe ppc64el python3-lz4 ppc64el 4.0.2+dfsg-1build4 [27.8 kB] 741s Get:83 http://ftpmaster.internal/ubuntu plucky/universe ppc64el unicode-data all 15.1.0-1 [8878 kB] 742s Get:84 http://ftpmaster.internal/ubuntu plucky/universe ppc64el python3-fonttools ppc64el 4.46.0-1build2 [1473 kB] 742s Get:85 http://ftpmaster.internal/ubuntu plucky/universe ppc64el python3-kiwisolver ppc64el 1.4.7-2 [59.2 kB] 742s Get:86 http://ftpmaster.internal/ubuntu plucky/main ppc64el python3-packaging all 24.1-1 [41.4 kB] 742s Get:87 http://ftpmaster.internal/ubuntu plucky/universe ppc64el python3-matplotlib ppc64el 3.8.3-3 [4610 kB] 742s Get:88 http://ftpmaster.internal/ubuntu plucky/universe ppc64el python3-pandas-lib ppc64el 2.2.3+dfsg-5 [4761 kB] 742s Get:89 http://ftpmaster.internal/ubuntu plucky/universe ppc64el python3-pandas all 2.2.3+dfsg-5 [3112 kB] 742s Get:90 http://ftpmaster.internal/ubuntu plucky/universe ppc64el python3-treetime all 0.11.4-1 [941 kB] 742s Fetched 91.6 MB in 6s (14.5 MB/s) 742s Selecting previously unselected package libpython3.13-minimal:ppc64el. 743s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 73774 files and directories currently installed.) 743s Preparing to unpack .../00-libpython3.13-minimal_3.13.0-2_ppc64el.deb ... 743s Unpacking libpython3.13-minimal:ppc64el (3.13.0-2) ... 743s Selecting previously unselected package python3.13-minimal. 743s Preparing to unpack .../01-python3.13-minimal_3.13.0-2_ppc64el.deb ... 743s Unpacking python3.13-minimal (3.13.0-2) ... 743s Selecting previously unselected package sgml-base. 743s Preparing to unpack .../02-sgml-base_1.31_all.deb ... 743s Unpacking sgml-base (1.31) ... 743s Selecting previously unselected package libtcl8.6:ppc64el. 743s Preparing to unpack .../03-libtcl8.6_8.6.15+dfsg-2_ppc64el.deb ... 743s Unpacking libtcl8.6:ppc64el (8.6.15+dfsg-2) ... 743s Selecting previously unselected package fonts-dejavu-mono. 743s Preparing to unpack .../04-fonts-dejavu-mono_2.37-8_all.deb ... 743s Unpacking fonts-dejavu-mono (2.37-8) ... 743s Selecting previously unselected package fonts-dejavu-core. 743s Preparing to unpack .../05-fonts-dejavu-core_2.37-8_all.deb ... 743s Unpacking fonts-dejavu-core (2.37-8) ... 743s Selecting previously unselected package libfontenc1:ppc64el. 743s Preparing to unpack .../06-libfontenc1_1%3a1.1.8-1build1_ppc64el.deb ... 743s Unpacking libfontenc1:ppc64el (1:1.1.8-1build1) ... 743s Selecting previously unselected package x11-common. 743s Preparing to unpack .../07-x11-common_1%3a7.7+23ubuntu3_all.deb ... 743s Unpacking x11-common (1:7.7+23ubuntu3) ... 743s Selecting previously unselected package xfonts-encodings. 743s Preparing to unpack .../08-xfonts-encodings_1%3a1.0.5-0ubuntu2_all.deb ... 743s Unpacking xfonts-encodings (1:1.0.5-0ubuntu2) ... 743s Selecting previously unselected package xfonts-utils. 743s Preparing to unpack .../09-xfonts-utils_1%3a7.7+7_ppc64el.deb ... 743s Unpacking xfonts-utils (1:7.7+7) ... 743s Selecting previously unselected package fonts-urw-base35. 743s Preparing to unpack .../10-fonts-urw-base35_20200910-8_all.deb ... 743s Unpacking fonts-urw-base35 (20200910-8) ... 743s Selecting previously unselected package fontconfig-config. 743s Preparing to unpack .../11-fontconfig-config_2.15.0-1.1ubuntu2_ppc64el.deb ... 744s Unpacking fontconfig-config (2.15.0-1.1ubuntu2) ... 744s Selecting previously unselected package libfontconfig1:ppc64el. 744s Preparing to unpack .../12-libfontconfig1_2.15.0-1.1ubuntu2_ppc64el.deb ... 744s Unpacking libfontconfig1:ppc64el (2.15.0-1.1ubuntu2) ... 744s Selecting previously unselected package libxrender1:ppc64el. 744s Preparing to unpack .../13-libxrender1_1%3a0.9.10-1.1build1_ppc64el.deb ... 744s Unpacking libxrender1:ppc64el (1:0.9.10-1.1build1) ... 744s Selecting previously unselected package libxft2:ppc64el. 744s Preparing to unpack .../14-libxft2_2.3.6-1build1_ppc64el.deb ... 744s Unpacking libxft2:ppc64el (2.3.6-1build1) ... 744s Selecting previously unselected package libxss1:ppc64el. 744s Preparing to unpack .../15-libxss1_1%3a1.2.3-1build3_ppc64el.deb ... 744s Unpacking libxss1:ppc64el (1:1.2.3-1build3) ... 744s Selecting previously unselected package libtk8.6:ppc64el. 744s Preparing to unpack .../16-libtk8.6_8.6.15-1_ppc64el.deb ... 744s Unpacking libtk8.6:ppc64el (8.6.15-1) ... 744s Selecting previously unselected package tk8.6-blt2.5. 744s Preparing to unpack .../17-tk8.6-blt2.5_2.5.3+dfsg-7build1_ppc64el.deb ... 744s Unpacking tk8.6-blt2.5 (2.5.3+dfsg-7build1) ... 744s Selecting previously unselected package blt. 744s Preparing to unpack .../18-blt_2.5.3+dfsg-7build1_ppc64el.deb ... 744s Unpacking blt (2.5.3+dfsg-7build1) ... 744s Selecting previously unselected package fonts-lyx. 744s Preparing to unpack .../19-fonts-lyx_2.4.2.1-1_all.deb ... 744s Unpacking fonts-lyx (2.4.2.1-1) ... 744s Selecting previously unselected package libblas3:ppc64el. 744s Preparing to unpack .../20-libblas3_3.12.0-3build2_ppc64el.deb ... 744s Unpacking libblas3:ppc64el (3.12.0-3build2) ... 744s Selecting previously unselected package libpixman-1-0:ppc64el. 744s Preparing to unpack .../21-libpixman-1-0_0.44.0-3_ppc64el.deb ... 744s Unpacking libpixman-1-0:ppc64el (0.44.0-3) ... 744s Selecting previously unselected package libxcb-render0:ppc64el. 744s Preparing to unpack .../22-libxcb-render0_1.17.0-2_ppc64el.deb ... 744s Unpacking libxcb-render0:ppc64el (1.17.0-2) ... 744s Selecting previously unselected package libxcb-shm0:ppc64el. 744s Preparing to unpack .../23-libxcb-shm0_1.17.0-2_ppc64el.deb ... 744s Unpacking libxcb-shm0:ppc64el (1.17.0-2) ... 744s Selecting previously unselected package libcairo2:ppc64el. 744s Preparing to unpack .../24-libcairo2_1.18.2-2_ppc64el.deb ... 744s Unpacking libcairo2:ppc64el (1.18.2-2) ... 744s Selecting previously unselected package libdeflate0:ppc64el. 744s Preparing to unpack .../25-libdeflate0_1.22-1_ppc64el.deb ... 744s Unpacking libdeflate0:ppc64el (1.22-1) ... 744s Selecting previously unselected package libgfortran5:ppc64el. 744s Preparing to unpack .../26-libgfortran5_14.2.0-8ubuntu1_ppc64el.deb ... 744s Unpacking libgfortran5:ppc64el (14.2.0-8ubuntu1) ... 744s Selecting previously unselected package libgomp1:ppc64el. 744s Preparing to unpack .../27-libgomp1_14.2.0-8ubuntu1_ppc64el.deb ... 744s Unpacking libgomp1:ppc64el (14.2.0-8ubuntu1) ... 744s Selecting previously unselected package libgraphite2-3:ppc64el. 744s Preparing to unpack .../28-libgraphite2-3_1.3.14-2ubuntu1_ppc64el.deb ... 744s Unpacking libgraphite2-3:ppc64el (1.3.14-2ubuntu1) ... 744s Selecting previously unselected package libharfbuzz0b:ppc64el. 744s Preparing to unpack .../29-libharfbuzz0b_10.0.1-1_ppc64el.deb ... 744s Unpacking libharfbuzz0b:ppc64el (10.0.1-1) ... 744s Selecting previously unselected package libimagequant0:ppc64el. 744s Preparing to unpack .../30-libimagequant0_2.18.0-1build1_ppc64el.deb ... 744s Unpacking libimagequant0:ppc64el (2.18.0-1build1) ... 744s Selecting previously unselected package libjpeg-turbo8:ppc64el. 744s Preparing to unpack .../31-libjpeg-turbo8_2.1.5-2ubuntu2_ppc64el.deb ... 744s Unpacking libjpeg-turbo8:ppc64el (2.1.5-2ubuntu2) ... 744s Selecting previously unselected package libjpeg8:ppc64el. 744s Preparing to unpack .../32-libjpeg8_8c-2ubuntu11_ppc64el.deb ... 744s Unpacking libjpeg8:ppc64el (8c-2ubuntu11) ... 744s Selecting previously unselected package libjs-jquery. 744s Preparing to unpack .../33-libjs-jquery_3.6.1+dfsg+~3.5.14-1_all.deb ... 744s Unpacking libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... 744s Selecting previously unselected package libjs-jquery-ui. 744s Preparing to unpack .../34-libjs-jquery-ui_1.13.2+dfsg-1_all.deb ... 744s Unpacking libjs-jquery-ui (1.13.2+dfsg-1) ... 745s Selecting previously unselected package liblapack3:ppc64el. 745s Preparing to unpack .../35-liblapack3_3.12.0-3build2_ppc64el.deb ... 745s Unpacking liblapack3:ppc64el (3.12.0-3build2) ... 745s Selecting previously unselected package liblbfgsb0:ppc64el. 745s Preparing to unpack .../36-liblbfgsb0_3.0+dfsg.4-1build1_ppc64el.deb ... 745s Unpacking liblbfgsb0:ppc64el (3.0+dfsg.4-1build1) ... 745s Selecting previously unselected package liblcms2-2:ppc64el. 745s Preparing to unpack .../37-liblcms2-2_2.16-2_ppc64el.deb ... 745s Unpacking liblcms2-2:ppc64el (2.16-2) ... 745s Selecting previously unselected package liblerc4:ppc64el. 745s Preparing to unpack .../38-liblerc4_4.0.0+ds-4ubuntu2_ppc64el.deb ... 745s Unpacking liblerc4:ppc64el (4.0.0+ds-4ubuntu2) ... 745s Selecting previously unselected package libpython3.13-stdlib:ppc64el. 745s Preparing to unpack .../39-libpython3.13-stdlib_3.13.0-2_ppc64el.deb ... 745s Unpacking libpython3.13-stdlib:ppc64el (3.13.0-2) ... 745s Selecting previously unselected package libqhull-r8.0:ppc64el. 745s Preparing to unpack .../40-libqhull-r8.0_2020.2-6build1_ppc64el.deb ... 745s Unpacking libqhull-r8.0:ppc64el (2020.2-6build1) ... 745s Selecting previously unselected package libraqm0:ppc64el. 745s Preparing to unpack .../41-libraqm0_0.10.1-1build1_ppc64el.deb ... 745s Unpacking libraqm0:ppc64el (0.10.1-1build1) ... 745s Selecting previously unselected package libsharpyuv0:ppc64el. 745s Preparing to unpack .../42-libsharpyuv0_1.4.0-0.1_ppc64el.deb ... 745s Unpacking libsharpyuv0:ppc64el (1.4.0-0.1) ... 745s Selecting previously unselected package libjbig0:ppc64el. 745s Preparing to unpack .../43-libjbig0_2.1-6.1ubuntu2_ppc64el.deb ... 745s Unpacking libjbig0:ppc64el (2.1-6.1ubuntu2) ... 745s Selecting previously unselected package libwebp7:ppc64el. 745s Preparing to unpack .../44-libwebp7_1.4.0-0.1_ppc64el.deb ... 745s Unpacking libwebp7:ppc64el (1.4.0-0.1) ... 745s Selecting previously unselected package libtiff6:ppc64el. 745s Preparing to unpack .../45-libtiff6_4.5.1+git230720-4ubuntu4_ppc64el.deb ... 745s Unpacking libtiff6:ppc64el (4.5.1+git230720-4ubuntu4) ... 745s Selecting previously unselected package libwebpdemux2:ppc64el. 745s Preparing to unpack .../46-libwebpdemux2_1.4.0-0.1_ppc64el.deb ... 745s Unpacking libwebpdemux2:ppc64el (1.4.0-0.1) ... 745s Selecting previously unselected package libwebpmux3:ppc64el. 745s Preparing to unpack .../47-libwebpmux3_1.4.0-0.1_ppc64el.deb ... 745s Unpacking libwebpmux3:ppc64el (1.4.0-0.1) ... 745s Selecting previously unselected package libxslt1.1:ppc64el. 745s Preparing to unpack .../48-libxslt1.1_1.1.39-0exp1ubuntu1_ppc64el.deb ... 745s Unpacking libxslt1.1:ppc64el (1.1.39-0exp1ubuntu1) ... 745s Selecting previously unselected package python-matplotlib-data. 745s Preparing to unpack .../49-python-matplotlib-data_3.8.3-3_all.deb ... 745s Unpacking python-matplotlib-data (3.8.3-3) ... 745s Selecting previously unselected package python3.13. 745s Preparing to unpack .../50-python3.13_3.13.0-2_ppc64el.deb ... 745s Unpacking python3.13 (3.13.0-2) ... 745s Selecting previously unselected package python3-all. 745s Preparing to unpack .../51-python3-all_3.12.7-1_ppc64el.deb ... 745s Unpacking python3-all (3.12.7-1) ... 745s Selecting previously unselected package python3-appdirs. 745s Preparing to unpack .../52-python3-appdirs_1.4.4-4_all.deb ... 745s Unpacking python3-appdirs (1.4.4-4) ... 745s Selecting previously unselected package python3-numpy. 745s Preparing to unpack .../53-python3-numpy_1%3a1.26.4+ds-11build1_ppc64el.deb ... 745s Unpacking python3-numpy (1:1.26.4+ds-11build1) ... 746s Selecting previously unselected package python3.12-tk. 746s Preparing to unpack .../54-python3.12-tk_3.12.7-3_ppc64el.deb ... 746s Unpacking python3.12-tk (3.12.7-3) ... 746s Selecting previously unselected package python3.13-tk. 746s Preparing to unpack .../55-python3.13-tk_3.13.0-2_ppc64el.deb ... 746s Unpacking python3.13-tk (3.13.0-2) ... 746s Selecting previously unselected package python3-tk:ppc64el. 746s Preparing to unpack .../56-python3-tk_3.12.7-1_ppc64el.deb ... 746s Unpacking python3-tk:ppc64el (3.12.7-1) ... 746s Selecting previously unselected package python3-pil.imagetk:ppc64el. 746s Preparing to unpack .../57-python3-pil.imagetk_10.4.0-1ubuntu1_ppc64el.deb ... 746s Unpacking python3-pil.imagetk:ppc64el (10.4.0-1ubuntu1) ... 746s Selecting previously unselected package libopenjp2-7:ppc64el. 746s Preparing to unpack .../58-libopenjp2-7_2.5.0-2ubuntu1_ppc64el.deb ... 746s Unpacking libopenjp2-7:ppc64el (2.5.0-2ubuntu1) ... 746s Selecting previously unselected package python3-pil:ppc64el. 746s Preparing to unpack .../59-python3-pil_10.4.0-1ubuntu1_ppc64el.deb ... 746s Unpacking python3-pil:ppc64el (10.4.0-1ubuntu1) ... 746s Selecting previously unselected package python3-cairo. 746s Preparing to unpack .../60-python3-cairo_1.26.1-2_ppc64el.deb ... 746s Unpacking python3-cairo (1.26.1-2) ... 746s Selecting previously unselected package python3-freetype. 746s Preparing to unpack .../61-python3-freetype_2.5.1-1_all.deb ... 746s Unpacking python3-freetype (2.5.1-1) ... 746s Selecting previously unselected package python3-rlpycairo. 746s Preparing to unpack .../62-python3-rlpycairo_0.3.0-3_all.deb ... 746s Unpacking python3-rlpycairo (0.3.0-3) ... 746s Selecting previously unselected package python3-reportlab. 746s Preparing to unpack .../63-python3-reportlab_4.2.5-1_all.deb ... 746s Unpacking python3-reportlab (4.2.5-1) ... 746s Selecting previously unselected package xml-core. 746s Preparing to unpack .../64-xml-core_0.19_all.deb ... 746s Unpacking xml-core (0.19) ... 746s Selecting previously unselected package w3c-sgml-lib. 746s Preparing to unpack .../65-w3c-sgml-lib_1.3-3_all.deb ... 746s Unpacking w3c-sgml-lib (1.3-3) ... 746s Selecting previously unselected package python3-biopython. 746s Preparing to unpack .../66-python3-biopython_1.84+dfsg-4_ppc64el.deb ... 746s Unpacking python3-biopython (1.84+dfsg-4) ... 746s Selecting previously unselected package python3-brotli. 746s Preparing to unpack .../67-python3-brotli_1.1.0-2build2_ppc64el.deb ... 746s Unpacking python3-brotli (1.1.0-2build2) ... 747s Selecting previously unselected package python3-contourpy. 747s Preparing to unpack .../68-python3-contourpy_1.3.0-2_ppc64el.deb ... 747s Unpacking python3-contourpy (1.3.0-2) ... 747s Selecting previously unselected package python3-cycler. 747s Preparing to unpack .../69-python3-cycler_0.12.1-1_all.deb ... 747s Unpacking python3-cycler (0.12.1-1) ... 747s Selecting previously unselected package python3-six. 747s Preparing to unpack .../70-python3-six_1.16.0-7_all.deb ... 747s Unpacking python3-six (1.16.0-7) ... 747s Selecting previously unselected package python3-dateutil. 747s Preparing to unpack .../71-python3-dateutil_2.9.0-2_all.deb ... 747s Unpacking python3-dateutil (2.9.0-2) ... 747s Selecting previously unselected package python3-decorator. 747s Preparing to unpack .../72-python3-decorator_5.1.1-5_all.deb ... 747s Unpacking python3-decorator (5.1.1-5) ... 747s Selecting previously unselected package python3-scipy. 747s Preparing to unpack .../73-python3-scipy_1.13.1-5_ppc64el.deb ... 747s Unpacking python3-scipy (1.13.1-5) ... 747s Selecting previously unselected package python3-ufolib2. 747s Preparing to unpack .../74-python3-ufolib2_0.16.1+dfsg1-1_all.deb ... 747s Unpacking python3-ufolib2 (0.16.1+dfsg1-1) ... 747s Selecting previously unselected package python3-mpmath. 747s Preparing to unpack .../75-python3-mpmath_1.3.0-1_all.deb ... 747s Unpacking python3-mpmath (1.3.0-1) ... 748s Selecting previously unselected package python3-sympy. 748s Preparing to unpack .../76-python3-sympy_1.13.3-1_all.deb ... 748s Unpacking python3-sympy (1.13.3-1) ... 748s Selecting previously unselected package python3-tz. 748s Preparing to unpack .../77-python3-tz_2024.1-2_all.deb ... 748s Unpacking python3-tz (2024.1-2) ... 748s Selecting previously unselected package python3-fs. 748s Preparing to unpack .../78-python3-fs_2.4.16-4_all.deb ... 748s Unpacking python3-fs (2.4.16-4) ... 748s Selecting previously unselected package python3-lxml:ppc64el. 748s Preparing to unpack .../79-python3-lxml_5.3.0-1_ppc64el.deb ... 748s Unpacking python3-lxml:ppc64el (5.3.0-1) ... 748s Selecting previously unselected package python3-lz4. 748s Preparing to unpack .../80-python3-lz4_4.0.2+dfsg-1build4_ppc64el.deb ... 748s Unpacking python3-lz4 (4.0.2+dfsg-1build4) ... 748s Selecting previously unselected package unicode-data. 748s Preparing to unpack .../81-unicode-data_15.1.0-1_all.deb ... 748s Unpacking unicode-data (15.1.0-1) ... 749s Selecting previously unselected package python3-fonttools. 749s Preparing to unpack .../82-python3-fonttools_4.46.0-1build2_ppc64el.deb ... 749s Unpacking python3-fonttools (4.46.0-1build2) ... 749s Selecting previously unselected package python3-kiwisolver. 749s Preparing to unpack .../83-python3-kiwisolver_1.4.7-2_ppc64el.deb ... 749s Unpacking python3-kiwisolver (1.4.7-2) ... 749s Selecting previously unselected package python3-packaging. 749s Preparing to unpack .../84-python3-packaging_24.1-1_all.deb ... 749s Unpacking python3-packaging (24.1-1) ... 749s Selecting previously unselected package python3-matplotlib. 749s Preparing to unpack .../85-python3-matplotlib_3.8.3-3_ppc64el.deb ... 749s Unpacking python3-matplotlib (3.8.3-3) ... 749s Selecting previously unselected package python3-pandas-lib:ppc64el. 749s Preparing to unpack .../86-python3-pandas-lib_2.2.3+dfsg-5_ppc64el.deb ... 749s Unpacking python3-pandas-lib:ppc64el (2.2.3+dfsg-5) ... 749s Selecting previously unselected package python3-pandas. 749s Preparing to unpack .../87-python3-pandas_2.2.3+dfsg-5_all.deb ... 749s Unpacking python3-pandas (2.2.3+dfsg-5) ... 750s Selecting previously unselected package python3-treetime. 750s Preparing to unpack .../88-python3-treetime_0.11.4-1_all.deb ... 750s Unpacking python3-treetime (0.11.4-1) ... 750s Selecting previously unselected package autopkgtest-satdep. 750s Preparing to unpack .../89-2-autopkgtest-satdep.deb ... 750s Unpacking autopkgtest-satdep (0) ... 750s Setting up libgraphite2-3:ppc64el (1.3.14-2ubuntu1) ... 750s Setting up liblcms2-2:ppc64el (2.16-2) ... 750s Setting up libpixman-1-0:ppc64el (0.44.0-3) ... 750s Setting up libsharpyuv0:ppc64el (1.4.0-0.1) ... 750s Setting up liblerc4:ppc64el (4.0.0+ds-4ubuntu2) ... 750s Setting up libxrender1:ppc64el (1:0.9.10-1.1build1) ... 750s Setting up python3-lz4 (4.0.2+dfsg-1build4) ... 750s Setting up libxcb-render0:ppc64el (1.17.0-2) ... 750s Setting up fonts-lyx (2.4.2.1-1) ... 750s Setting up x11-common (1:7.7+23ubuntu3) ... 751s Setting up libdeflate0:ppc64el (1.22-1) ... 751s Setting up libqhull-r8.0:ppc64el (2020.2-6build1) ... 751s Setting up libxcb-shm0:ppc64el (1.17.0-2) ... 751s Setting up libgomp1:ppc64el (14.2.0-8ubuntu1) ... 751s Setting up python3-freetype (2.5.1-1) ... 751s Setting up libjbig0:ppc64el (2.1-6.1ubuntu2) ... 751s Setting up python3-tz (2024.1-2) ... 752s Setting up unicode-data (15.1.0-1) ... 752s Setting up python3-six (1.16.0-7) ... 752s Setting up libpython3.13-minimal:ppc64el (3.13.0-2) ... 752s Setting up python3-decorator (5.1.1-5) ... 752s Setting up libfontenc1:ppc64el (1:1.1.8-1build1) ... 752s Setting up libblas3:ppc64el (3.12.0-3build2) ... 752s update-alternatives: using /usr/lib/powerpc64le-linux-gnu/blas/libblas.so.3 to provide /usr/lib/powerpc64le-linux-gnu/libblas.so.3 (libblas.so.3-powerpc64le-linux-gnu) in auto mode 752s Setting up python3-packaging (24.1-1) ... 753s Setting up python3-brotli (1.1.0-2build2) ... 753s Setting up xfonts-encodings (1:1.0.5-0ubuntu2) ... 753s Setting up python3-cycler (0.12.1-1) ... 753s Setting up libimagequant0:ppc64el (2.18.0-1build1) ... 753s Setting up fonts-dejavu-mono (2.37-8) ... 753s Setting up python3-kiwisolver (1.4.7-2) ... 753s Setting up libtcl8.6:ppc64el (8.6.15+dfsg-2) ... 753s Setting up fonts-dejavu-core (2.37-8) ... 753s Setting up libjpeg-turbo8:ppc64el (2.1.5-2ubuntu2) ... 753s Setting up libgfortran5:ppc64el (14.2.0-8ubuntu1) ... 753s Setting up libwebp7:ppc64el (1.4.0-0.1) ... 753s Setting up libxslt1.1:ppc64el (1.1.39-0exp1ubuntu1) ... 753s Setting up libopenjp2-7:ppc64el (2.5.0-2ubuntu1) ... 753s Setting up python3.13-minimal (3.13.0-2) ... 754s Setting up libharfbuzz0b:ppc64el (10.0.1-1) ... 754s Setting up python3-dateutil (2.9.0-2) ... 755s Setting up sgml-base (1.31) ... 755s Setting up libxss1:ppc64el (1:1.2.3-1build3) ... 755s Setting up libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... 755s Setting up python3-mpmath (1.3.0-1) ... 757s Setting up python-matplotlib-data (3.8.3-3) ... 757s Setting up libwebpmux3:ppc64el (1.4.0-0.1) ... 757s Setting up python3-appdirs (1.4.4-4) ... 757s Setting up libpython3.13-stdlib:ppc64el (3.13.0-2) ... 757s Setting up libjpeg8:ppc64el (8c-2ubuntu11) ... 757s Setting up python3-sympy (1.13.3-1) ... 775s Setting up liblapack3:ppc64el (3.12.0-3build2) ... 775s update-alternatives: using /usr/lib/powerpc64le-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/powerpc64le-linux-gnu/liblapack.so.3 (liblapack.so.3-powerpc64le-linux-gnu) in auto mode 775s Setting up python3.13 (3.13.0-2) ... 776s Setting up fontconfig-config (2.15.0-1.1ubuntu2) ... 776s Setting up libwebpdemux2:ppc64el (1.4.0-0.1) ... 776s Setting up python3-all (3.12.7-1) ... 776s Setting up xfonts-utils (1:7.7+7) ... 776s Setting up python3-fs (2.4.16-4) ... 777s Setting up libjs-jquery-ui (1.13.2+dfsg-1) ... 777s Setting up libraqm0:ppc64el (0.10.1-1build1) ... 777s Setting up python3-numpy (1:1.26.4+ds-11build1) ... 782s Setting up python3-lxml:ppc64el (5.3.0-1) ... 782s Setting up libtiff6:ppc64el (4.5.1+git230720-4ubuntu4) ... 782s Setting up xml-core (0.19) ... 782s Setting up python3-contourpy (1.3.0-2) ... 783s Setting up libfontconfig1:ppc64el (2.15.0-1.1ubuntu2) ... 783s Setting up liblbfgsb0:ppc64el (3.0+dfsg.4-1build1) ... 783s Setting up libxft2:ppc64el (2.3.6-1build1) ... 783s Setting up python3-scipy (1.13.1-5) ... 791s Setting up libtk8.6:ppc64el (8.6.15-1) ... 791s Setting up python3-pandas-lib:ppc64el (2.2.3+dfsg-5) ... 791s Setting up python3.12-tk (3.12.7-3) ... 792s Setting up fonts-urw-base35 (20200910-8) ... 792s Setting up libcairo2:ppc64el (1.18.2-2) ... 792s Setting up python3.13-tk (3.13.0-2) ... 792s Setting up python3-pil:ppc64el (10.4.0-1ubuntu1) ... 793s Setting up python3-pandas (2.2.3+dfsg-5) ... 806s Setting up tk8.6-blt2.5 (2.5.3+dfsg-7build1) ... 806s Setting up python3-cairo (1.26.1-2) ... 806s Setting up blt (2.5.3+dfsg-7build1) ... 806s Setting up python3-tk:ppc64el (3.12.7-1) ... 806s Setting up python3-pil.imagetk:ppc64el (10.4.0-1ubuntu1) ... 806s Setting up python3-rlpycairo (0.3.0-3) ... 807s Setting up python3-reportlab (4.2.5-1) ... 809s Setting up python3-fonttools (4.46.0-1build2) ... 811s Setting up python3-ufolib2 (0.16.1+dfsg1-1) ... 811s Setting up python3-matplotlib (3.8.3-3) ... 816s Processing triggers for libc-bin (2.40-1ubuntu3) ... 816s Processing triggers for systemd (256.5-2ubuntu4) ... 816s Processing triggers for man-db (2.12.1-3) ... 818s Processing triggers for sgml-base (1.31) ... 818s Setting up w3c-sgml-lib (1.3-3) ... 859s Setting up python3-biopython (1.84+dfsg-4) ... 862s Setting up python3-treetime (0.11.4-1) ... 863s Setting up autopkgtest-satdep (0) ... 867s (Reading database ... 85254 files and directories currently installed.) 867s Removing autopkgtest-satdep (0) ... 872s autopkgtest [11:29:58]: test autodep8-python3: set -e ; for py in $(py3versions -r 2>/dev/null) ; do cd "$AUTOPKGTEST_TMP" ; echo "Testing with $py:" ; $py -c "import treetime; print(treetime)" ; done 872s autopkgtest [11:29:58]: test autodep8-python3: [----------------------- 873s Testing with python3.13: 873s Traceback (most recent call last): 873s File "/usr/lib/python3/dist-packages/numpy/core/__init__.py", line 24, in 873s from . import multiarray 873s File "/usr/lib/python3/dist-packages/numpy/core/multiarray.py", line 10, in 873s from . import overrides 873s File "/usr/lib/python3/dist-packages/numpy/core/overrides.py", line 8, in 873s from numpy.core._multiarray_umath import ( 873s add_docstring, _get_implementing_args, _ArrayFunctionDispatcher) 873s ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 873s 873s During handling of the above exception, another exception occurred: 873s 873s Traceback (most recent call last): 873s File "/usr/lib/python3/dist-packages/numpy/__init__.py", line 130, in 873s from numpy.__config__ import show as show_config 873s File "/usr/lib/python3/dist-packages/numpy/__config__.py", line 4, in 873s from numpy.core._multiarray_umath import ( 873s ...<3 lines>... 873s ) 873s File "/usr/lib/python3/dist-packages/numpy/core/__init__.py", line 50, in 873s raise ImportError(msg) 873s ImportError: 873s 873s IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 873s 873s Importing the numpy C-extensions failed. This error can happen for 873s many reasons, often due to issues with your setup or how NumPy was 873s installed. 873s 873s We have compiled some common reasons and troubleshooting tips at: 873s 873s https://numpy.org/devdocs/user/troubleshooting-importerror.html 873s 873s Please note and check the following: 873s 873s * The Python version is: Python3.13 from "/usr/bin/python3.13" 873s * The NumPy version is: "1.26.4" 873s 873s and make sure that they are the versions you expect. 873s Please carefully study the documentation linked above for further help. 873s 873s Original error was: No module named 'numpy.core._multiarray_umath' 873s 873s 873s The above exception was the direct cause of the following exception: 873s 873s Traceback (most recent call last): 873s File "", line 1, in 873s import treetime; print(treetime) 873s ^^^^^^^^^^^^^^^ 873s File "/usr/lib/python3/dist-packages/treetime/__init__.py", line 38, in 873s from .treeanc import TreeAnc 873s File "/usr/lib/python3/dist-packages/treetime/treeanc.py", line 3, in 873s import numpy as np 873s File "/usr/lib/python3/dist-packages/numpy/__init__.py", line 135, in 873s raise ImportError(msg) from e 873s ImportError: Error importing numpy: you should not try to import numpy from 873s its source directory; please exit the numpy source tree, and relaunch 873s your python interpreter from there. 873s autopkgtest [11:29:59]: test autodep8-python3: -----------------------] 874s autodep8-python3 FAIL non-zero exit status 1 874s autopkgtest [11:30:00]: test autodep8-python3: - - - - - - - - - - results - - - - - - - - - - 874s autopkgtest [11:30:00]: @@@@@@@@@@@@@@@@@@@@ summary 874s run-unit-test PASS 874s autodep8-python3 FAIL non-zero exit status 1 880s virt: nova [W] Using flock in prodstack6-ppc64el 880s virt: Creating nova instance adt-plucky-ppc64el-python-treetime-20241113-111526-juju-7f2275-prod-proposed-migration-environment-2-14270cf4-c690-4351-9ffa-037da6f2d422 from image adt/ubuntu-plucky-ppc64el-server-20241113.img (UUID 0c5715b6-5cca-4485-b8bf-b85dfd917a5f)... 880s virt: nova [W] Using flock in prodstack6-ppc64el 880s virt: Creating nova instance adt-plucky-ppc64el-python-treetime-20241113-111526-juju-7f2275-prod-proposed-migration-environment-2-14270cf4-c690-4351-9ffa-037da6f2d422 from image adt/ubuntu-plucky-ppc64el-server-20241113.img (UUID 0c5715b6-5cca-4485-b8bf-b85dfd917a5f)...