0s autopkgtest [22:11:29]: starting date and time: 2025-02-19 22:11:29+0000 0s autopkgtest [22:11:29]: git checkout: 325255d2 Merge branch 'pin-any-arch' into 'ubuntu/production' 0s autopkgtest [22:11:29]: host juju-7f2275-prod-proposed-migration-environment-15; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.tnq5cz9q/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:sphinx --apt-upgrade python-skbio --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=sphinx/8.1.3-5 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest-ppc64el --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-15@bos03-ppc64el-16.secgroup --name adt-plucky-ppc64el-python-skbio-20250219-221128-juju-7f2275-prod-proposed-migration-environment-15-80d5e3e4-ff31-48fc-83ca-6311206f2987 --image adt/ubuntu-plucky-ppc64el-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-15 --net-id=net_prod-proposed-migration-ppc64el -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,keyserver.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com,radosgw.ps5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/ 98s autopkgtest [22:13:07]: testbed dpkg architecture: ppc64el 98s autopkgtest [22:13:07]: testbed apt version: 2.9.30 98s autopkgtest [22:13:07]: @@@@@@@@@@@@@@@@@@@@ test bed setup 99s autopkgtest [22:13:08]: testbed release detected to be: None 99s autopkgtest [22:13:08]: updating testbed package index (apt update) 100s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease [110 kB] 100s Hit:2 http://ftpmaster.internal/ubuntu plucky InRelease 100s Hit:3 http://ftpmaster.internal/ubuntu plucky-updates InRelease 100s Hit:4 http://ftpmaster.internal/ubuntu plucky-security InRelease 100s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/universe Sources [731 kB] 100s Get:6 http://ftpmaster.internal/ubuntu plucky-proposed/main Sources [78.4 kB] 100s Get:7 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse Sources [14.5 kB] 100s Get:8 http://ftpmaster.internal/ubuntu plucky-proposed/restricted Sources [3120 B] 100s Get:9 http://ftpmaster.internal/ubuntu plucky-proposed/main ppc64el Packages [104 kB] 100s Get:10 http://ftpmaster.internal/ubuntu plucky-proposed/restricted ppc64el Packages [760 B] 100s Get:11 http://ftpmaster.internal/ubuntu plucky-proposed/universe ppc64el Packages [675 kB] 101s Get:12 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse ppc64el Packages [5760 B] 101s Fetched 1723 kB in 1s (1629 kB/s) 102s Reading package lists... 102s + lsb_release --codename --short 102s + RELEASE=plucky 102s + cat 102s + [ plucky != trusty ] 102s + DEBIAN_FRONTEND=noninteractive eatmydata apt-get -y --allow-downgrades -o Dpkg::Options::=--force-confnew dist-upgrade 102s Reading package lists... 103s Building dependency tree... 103s Reading state information... 103s Calculating upgrade... 103s + rm /etc/apt/preferences.d/force-downgrade-to-release.pref 103s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 103s + /usr/lib/apt/apt-helper analyze-pattern ?true 103s + uname -r 103s + sed s/\./\\./g 103s + running_kernel_pattern=^linux-.*6\.12\.0-15-generic.* 103s + apt list ?obsolete 103s + tail -n+2 103s + + cutgrep -d/ -f1 103s -v ^linux-.*6\.12\.0-15-generic.* 103s + true 103s + obsolete_pkgs= 103s + DEBIAN_FRONTEND=noninteractive eatmydata apt-get -y purge --autoremove 103s Reading package lists... 104s Building dependency tree... 104s Reading state information... 104s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 104s + grep -q trusty /etc/lsb-release 104s + [ ! -d /usr/share/doc/unattended-upgrades ] 104s + [ ! -d /usr/share/doc/lxd ] 104s + [ ! -d /usr/share/doc/lxd-client ] 104s + [ ! -d /usr/share/doc/snapd ] 104s + type iptables 104s + cat 104s + chmod 755 /etc/rc.local 104s + . /etc/rc.local 104s + iptables -w -t mangle -A FORWARD -p tcp --tcp-flags SYN,RST SYN -j TCPMSS --clamp-mss-to-pmtu 104s + iptables -A OUTPUT -d 10.255.255.1/32 -p tcp -j DROP 104s + iptables -A OUTPUT -d 10.255.255.2/32 -p tcp -j DROP 104s + uname -m 104s + [ ppc64le = ppc64le ] 104s + systemctl is-active keyboard-setup.service 104s + [ active = failed ] 104s + [ -d /run/systemd/system ] 104s + systemd-detect-virt --quiet --vm 104s + mkdir -p /etc/systemd/system/systemd-random-seed.service.d/ 104s + cat 104s + grep -q lz4 /etc/initramfs-tools/initramfs.conf 104s + echo COMPRESS=lz4 104s autopkgtest [22:13:13]: upgrading testbed (apt dist-upgrade and autopurge) 104s Reading package lists... 104s Building dependency tree... 104s Reading state information... 105s Calculating upgrade...Starting pkgProblemResolver with broken count: 0 105s Starting 2 pkgProblemResolver with broken count: 0 105s Done 106s Entering ResolveByKeep 106s 106s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 106s Reading package lists... 107s Building dependency tree... 107s Reading state information... 107s Starting pkgProblemResolver with broken count: 0 107s Starting 2 pkgProblemResolver with broken count: 0 107s Done 107s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 110s autopkgtest [22:13:19]: testbed running kernel: Linux 6.12.0-15-generic #15-Ubuntu SMP Tue Feb 4 16:32:08 UTC 2025 110s autopkgtest [22:13:19]: @@@@@@@@@@@@@@@@@@@@ apt-source python-skbio 113s Get:1 http://ftpmaster.internal/ubuntu plucky/universe python-skbio 0.6.2-4build1 (dsc) [2921 B] 113s Get:2 http://ftpmaster.internal/ubuntu plucky/universe python-skbio 0.6.2-4build1 (tar) [2204 kB] 113s Get:3 http://ftpmaster.internal/ubuntu plucky/universe python-skbio 0.6.2-4build1 (diff) [12.0 kB] 113s gpgv: Signature made Fri Jan 31 09:41:17 2025 UTC 113s gpgv: using RSA key 25E3FF2D7F469DBE7D0D4E50AFCFEC8E669CE1C2 113s gpgv: Can't check signature: No public key 113s dpkg-source: warning: cannot verify inline signature for ./python-skbio_0.6.2-4build1.dsc: no acceptable signature found 114s autopkgtest [22:13:23]: testing package python-skbio version 0.6.2-4build1 114s autopkgtest [22:13:23]: build not needed 115s autopkgtest [22:13:24]: test pybuild-autopkgtest: preparing testbed 115s Reading package lists... 115s Building dependency tree... 115s Reading state information... 116s Starting pkgProblemResolver with broken count: 0 116s Starting 2 pkgProblemResolver with broken count: 0 116s Done 116s The following NEW packages will be installed: 116s architecture-properties autoconf automake autopoint autotools-dev blt 116s build-essential cpp cpp-14 cpp-14-powerpc64le-linux-gnu 116s cpp-powerpc64le-linux-gnu cython3 debhelper debugedit dh-autoreconf 116s dh-python dh-strip-nondeterminism docutils-common dwz fontconfig-config 116s fonts-dejavu-core fonts-dejavu-mono fonts-lyx fonts-mathjax fonts-open-sans 116s g++ g++-14 g++-14-powerpc64le-linux-gnu g++-powerpc64le-linux-gnu gcc gcc-14 116s gcc-14-powerpc64le-linux-gnu gcc-powerpc64le-linux-gnu gettext 116s intltool-debian libaec0 libarchive-zip-perl libasan8 libblas3 libcc1-0 116s libdebhelper-perl libdeflate0 libexpat1-dev libfile-stripnondeterminism-perl 116s libfontconfig1 libgcc-14-dev libgfortran5 libgomp1 libgraphite2-3 116s libharfbuzz0b libhdf5-310 libhdf5-hl-310 libimagequant0 libisl23 libitm1 116s libjbig0 libjpeg-turbo8 libjpeg8 libjs-jquery libjs-jquery-ui libjs-mathjax 116s libjs-sphinxdoc libjs-underscore libjson-perl liblapack3 liblbfgsb0 116s liblcms2-2 liblerc4 liblsan0 liblzf1 libmpc3 libopenjp2-7 libpython3-all-dev 116s libpython3-dev libpython3.12-dev libpython3.13-dev libqhull-r8.0 116s libquadmath0 libraqm0 libsharpyuv0 libsimde-dev libssw-dev libssw0 116s libstdc++-14-dev libsz2 libtcl8.6 libtiff6 libtk8.6 libtool libtsan2 116s libubsan1 libwebp7 libwebpdemux2 libwebpmux3 libxft2 libxrender1 libxslt1.1 116s libxss1 m4 node-fortawesome-fontawesome-free po-debconf 116s pybuild-plugin-autopkgtest python-biom-format-doc python-matplotlib-data 116s python-numpy-doc python-pandas-doc python-scipy-doc python-skbio-doc 116s python3-accessible-pygments python3-alabaster python3-all python3-all-dev 116s python3-asttokens python3-biom-format python3-brotli python3-bs4 116s python3-cachecontrol python3-click python3-contourpy python3-cycler 116s python3-dateutil python3-decorator python3-defusedxml python3-dev 116s python3-doc python3-docutils python3-executing python3-fonttools python3-fs 116s python3-h5py python3-h5py-serial python3-hdmedians python3-imagesize 116s python3-iniconfig python3-ipython python3-jedi python3-joblib 116s python3-kiwisolver python3-lxml python3-lz4 python3-matplotlib 116s python3-matplotlib-inline python3-mpmath python3-msgpack python3-natsort 116s python3-numpy python3-numpydoc python3-packaging python3-pandas 116s python3-pandas-lib python3-parso python3-patsy python3-pexpect python3-pil 116s python3-pil.imagetk python3-platformdirs python3-pluggy 116s python3-prompt-toolkit python3-ptyprocess python3-pure-eval 116s python3-pydata-sphinx-theme python3-pytest python3-pytz python3-roman 116s python3-scipy python3-skbio python3-sklearn python3-sklearn-lib 116s python3-snowballstemmer python3-soupsieve python3-sphinx 116s python3-sphinx-copybutton python3-sphinx-design python3-stack-data 116s python3-statsmodels python3-statsmodels-lib python3-sympy python3-tabulate 116s python3-threadpoolctl python3-tk python3-traitlets python3-typeshed 116s python3-tz python3-ufolib2 python3-wcwidth python3.12 python3.12-dev 116s python3.12-minimal python3.12-tk python3.13-dev python3.13-doc python3.13-tk 116s sgml-base sphinx-common tk8.6-blt2.5 unicode-data x11-common xml-core 116s zlib1g-dev 116s 0 upgraded, 199 newly installed, 0 to remove and 0 not upgraded. 116s Need to get 235 MB of archives. 116s After this operation, 1454 MB of additional disk space will be used. 116s Get:1 http://ftpmaster.internal/ubuntu plucky/main ppc64el python3.12-minimal ppc64el 3.12.9-1 [2465 kB] 117s Get:2 http://ftpmaster.internal/ubuntu plucky/main ppc64el sgml-base all 1.31 [11.4 kB] 117s Get:3 http://ftpmaster.internal/ubuntu plucky/main ppc64el python3.12 ppc64el 3.12.9-1 [671 kB] 118s Get:4 http://ftpmaster.internal/ubuntu plucky/universe ppc64el architecture-properties ppc64el 0.2.5 [2150 B] 118s Get:5 http://ftpmaster.internal/ubuntu plucky/main ppc64el m4 ppc64el 1.4.19-5 [280 kB] 118s Get:6 http://ftpmaster.internal/ubuntu plucky/main ppc64el autoconf all 2.72-3 [382 kB] 118s Get:7 http://ftpmaster.internal/ubuntu plucky/main ppc64el autotools-dev all 20220109.1 [44.9 kB] 118s Get:8 http://ftpmaster.internal/ubuntu plucky/main ppc64el automake all 1:1.17-3 [572 kB] 118s Get:9 http://ftpmaster.internal/ubuntu plucky/main ppc64el autopoint all 0.23.1-1 [619 kB] 118s Get:10 http://ftpmaster.internal/ubuntu plucky/main ppc64el libtcl8.6 ppc64el 8.6.16+dfsg-1 [1201 kB] 118s Get:11 http://ftpmaster.internal/ubuntu plucky/main ppc64el fonts-dejavu-mono all 2.37-8 [502 kB] 118s Get:12 http://ftpmaster.internal/ubuntu plucky/main ppc64el fonts-dejavu-core all 2.37-8 [835 kB] 118s Get:13 http://ftpmaster.internal/ubuntu plucky/main ppc64el fontconfig-config ppc64el 2.15.0-2ubuntu1 [37.5 kB] 118s Get:14 http://ftpmaster.internal/ubuntu plucky/main ppc64el libfontconfig1 ppc64el 2.15.0-2ubuntu1 [188 kB] 118s Get:15 http://ftpmaster.internal/ubuntu plucky/main ppc64el libxrender1 ppc64el 1:0.9.10-1.1build1 [23.1 kB] 118s Get:16 http://ftpmaster.internal/ubuntu plucky/main ppc64el libxft2 ppc64el 2.3.6-1build1 [61.5 kB] 118s Get:17 http://ftpmaster.internal/ubuntu plucky/main ppc64el x11-common all 1:7.7+23ubuntu3 [21.7 kB] 118s Get:18 http://ftpmaster.internal/ubuntu plucky/main ppc64el libxss1 ppc64el 1:1.2.3-1build3 [7980 B] 118s Get:19 http://ftpmaster.internal/ubuntu plucky/main ppc64el libtk8.6 ppc64el 8.6.16-1 [946 kB] 118s Get:20 http://ftpmaster.internal/ubuntu plucky/main ppc64el tk8.6-blt2.5 ppc64el 2.5.3+dfsg-7build1 [784 kB] 119s Get:21 http://ftpmaster.internal/ubuntu plucky/main ppc64el blt ppc64el 2.5.3+dfsg-7build1 [4840 B] 119s Get:22 http://ftpmaster.internal/ubuntu plucky/main ppc64el libisl23 ppc64el 0.27-1 [882 kB] 119s Get:23 http://ftpmaster.internal/ubuntu plucky/main ppc64el libmpc3 ppc64el 1.3.1-1build2 [62.1 kB] 119s Get:24 http://ftpmaster.internal/ubuntu plucky/main ppc64el cpp-14-powerpc64le-linux-gnu ppc64el 14.2.0-17ubuntu1 [10.5 MB] 119s Get:25 http://ftpmaster.internal/ubuntu plucky/main ppc64el cpp-14 ppc64el 14.2.0-17ubuntu1 [1038 B] 119s Get:26 http://ftpmaster.internal/ubuntu plucky/main ppc64el cpp-powerpc64le-linux-gnu ppc64el 4:14.2.0-1ubuntu1 [5566 B] 119s Get:27 http://ftpmaster.internal/ubuntu plucky/main ppc64el cpp ppc64el 4:14.2.0-1ubuntu1 [22.4 kB] 119s Get:28 http://ftpmaster.internal/ubuntu plucky/main ppc64el libcc1-0 ppc64el 15-20250213-1ubuntu1 [48.7 kB] 119s Get:29 http://ftpmaster.internal/ubuntu plucky/main ppc64el libgomp1 ppc64el 15-20250213-1ubuntu1 [168 kB] 119s Get:30 http://ftpmaster.internal/ubuntu plucky/main ppc64el libitm1 ppc64el 15-20250213-1ubuntu1 [32.4 kB] 119s Get:31 http://ftpmaster.internal/ubuntu plucky/main ppc64el libasan8 ppc64el 15-20250213-1ubuntu1 [3009 kB] 120s Get:32 http://ftpmaster.internal/ubuntu plucky/main ppc64el liblsan0 ppc64el 15-20250213-1ubuntu1 [1377 kB] 120s Get:33 http://ftpmaster.internal/ubuntu plucky/main ppc64el libtsan2 ppc64el 15-20250213-1ubuntu1 [2734 kB] 120s Get:34 http://ftpmaster.internal/ubuntu plucky/main ppc64el libubsan1 ppc64el 15-20250213-1ubuntu1 [1234 kB] 120s Get:35 http://ftpmaster.internal/ubuntu plucky/main ppc64el libquadmath0 ppc64el 15-20250213-1ubuntu1 [160 kB] 120s Get:36 http://ftpmaster.internal/ubuntu plucky/main ppc64el libgcc-14-dev ppc64el 14.2.0-17ubuntu1 [1620 kB] 120s Get:37 http://ftpmaster.internal/ubuntu plucky/main ppc64el gcc-14-powerpc64le-linux-gnu ppc64el 14.2.0-17ubuntu1 [20.6 MB] 121s Get:38 http://ftpmaster.internal/ubuntu plucky/main ppc64el gcc-14 ppc64el 14.2.0-17ubuntu1 [536 kB] 121s Get:39 http://ftpmaster.internal/ubuntu plucky/main ppc64el gcc-powerpc64le-linux-gnu ppc64el 4:14.2.0-1ubuntu1 [1226 B] 121s Get:40 http://ftpmaster.internal/ubuntu plucky/main ppc64el gcc ppc64el 4:14.2.0-1ubuntu1 [5012 B] 121s Get:41 http://ftpmaster.internal/ubuntu plucky/main ppc64el libstdc++-14-dev ppc64el 14.2.0-17ubuntu1 [2677 kB] 121s Get:42 http://ftpmaster.internal/ubuntu plucky/main ppc64el g++-14-powerpc64le-linux-gnu ppc64el 14.2.0-17ubuntu1 [12.0 MB] 121s Get:43 http://ftpmaster.internal/ubuntu plucky/main ppc64el g++-14 ppc64el 14.2.0-17ubuntu1 [21.8 kB] 121s Get:44 http://ftpmaster.internal/ubuntu plucky/main ppc64el g++-powerpc64le-linux-gnu ppc64el 4:14.2.0-1ubuntu1 [966 B] 121s Get:45 http://ftpmaster.internal/ubuntu plucky/main ppc64el g++ ppc64el 4:14.2.0-1ubuntu1 [1088 B] 121s Get:46 http://ftpmaster.internal/ubuntu plucky/main ppc64el build-essential ppc64el 12.10ubuntu1 [4936 B] 121s Get:47 http://ftpmaster.internal/ubuntu plucky/universe ppc64el cython3 ppc64el 3.0.11+dfsg-2ubuntu1 [3264 kB] 122s Get:48 http://ftpmaster.internal/ubuntu plucky/main ppc64el libdebhelper-perl all 13.24.1ubuntu2 [95.4 kB] 122s Get:49 http://ftpmaster.internal/ubuntu plucky/main ppc64el libtool all 2.5.4-3build1 [168 kB] 122s Get:50 http://ftpmaster.internal/ubuntu plucky/main ppc64el dh-autoreconf all 20 [16.1 kB] 122s Get:51 http://ftpmaster.internal/ubuntu plucky/main ppc64el libarchive-zip-perl all 1.68-1 [90.2 kB] 122s Get:52 http://ftpmaster.internal/ubuntu plucky/main ppc64el libfile-stripnondeterminism-perl all 1.14.1-2 [20.3 kB] 122s Get:53 http://ftpmaster.internal/ubuntu plucky/main ppc64el dh-strip-nondeterminism all 1.14.1-2 [5064 B] 122s Get:54 http://ftpmaster.internal/ubuntu plucky/main ppc64el debugedit ppc64el 1:5.1-2 [52.4 kB] 122s Get:55 http://ftpmaster.internal/ubuntu plucky/main ppc64el dwz ppc64el 0.15-1build6 [142 kB] 122s Get:56 http://ftpmaster.internal/ubuntu plucky/main ppc64el gettext ppc64el 0.23.1-1 [1155 kB] 122s Get:57 http://ftpmaster.internal/ubuntu plucky/main ppc64el intltool-debian all 0.35.0+20060710.6 [23.2 kB] 122s Get:58 http://ftpmaster.internal/ubuntu plucky/main ppc64el po-debconf all 1.0.21+nmu1 [233 kB] 122s Get:59 http://ftpmaster.internal/ubuntu plucky/main ppc64el debhelper all 13.24.1ubuntu2 [895 kB] 122s Get:60 http://ftpmaster.internal/ubuntu plucky/universe ppc64el dh-python all 6.20250108 [117 kB] 122s Get:61 http://ftpmaster.internal/ubuntu plucky/main ppc64el xml-core all 0.19 [20.3 kB] 122s Get:62 http://ftpmaster.internal/ubuntu plucky/main ppc64el docutils-common all 0.21.2+dfsg-2 [131 kB] 122s Get:63 http://ftpmaster.internal/ubuntu plucky/universe ppc64el fonts-lyx all 2.4.3-1 [171 kB] 122s Get:64 http://ftpmaster.internal/ubuntu plucky/main ppc64el fonts-mathjax all 2.7.9+dfsg-1 [2208 kB] 122s Get:65 http://ftpmaster.internal/ubuntu plucky/universe ppc64el fonts-open-sans all 1.11-2 [635 kB] 122s Get:66 http://ftpmaster.internal/ubuntu plucky/universe ppc64el libaec0 ppc64el 1.1.3-1 [30.1 kB] 122s Get:67 http://ftpmaster.internal/ubuntu plucky/main ppc64el libblas3 ppc64el 3.12.1-2 [239 kB] 122s Get:68 http://ftpmaster.internal/ubuntu plucky/main ppc64el libdeflate0 ppc64el 1.23-1 [63.4 kB] 122s Get:69 http://ftpmaster.internal/ubuntu plucky/main ppc64el libexpat1-dev ppc64el 2.6.4-1 [149 kB] 122s Get:70 http://ftpmaster.internal/ubuntu plucky/main ppc64el libgfortran5 ppc64el 15-20250213-1ubuntu1 [613 kB] 122s Get:71 http://ftpmaster.internal/ubuntu plucky/main ppc64el libgraphite2-3 ppc64el 1.3.14-2ubuntu1 [84.6 kB] 122s Get:72 http://ftpmaster.internal/ubuntu plucky/main ppc64el libharfbuzz0b ppc64el 10.2.0-1 [598 kB] 122s Get:73 http://ftpmaster.internal/ubuntu plucky/universe ppc64el libsz2 ppc64el 1.1.3-1 [5566 B] 122s Get:74 http://ftpmaster.internal/ubuntu plucky/universe ppc64el libhdf5-310 ppc64el 1.14.5+repack-3 [1523 kB] 122s Get:75 http://ftpmaster.internal/ubuntu plucky/universe ppc64el libhdf5-hl-310 ppc64el 1.14.5+repack-3 [74.9 kB] 122s Get:76 http://ftpmaster.internal/ubuntu plucky/main ppc64el libimagequant0 ppc64el 2.18.0-1build1 [43.2 kB] 122s Get:77 http://ftpmaster.internal/ubuntu plucky/main ppc64el libjpeg-turbo8 ppc64el 2.1.5-3ubuntu2 [215 kB] 122s Get:78 http://ftpmaster.internal/ubuntu plucky/main ppc64el libjpeg8 ppc64el 8c-2ubuntu11 [2148 B] 122s Get:79 http://ftpmaster.internal/ubuntu plucky/main ppc64el libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [328 kB] 122s Get:80 http://ftpmaster.internal/ubuntu plucky/universe ppc64el libjs-jquery-ui all 1.13.2+dfsg-1 [252 kB] 122s Get:81 http://ftpmaster.internal/ubuntu plucky/main ppc64el libjs-underscore all 1.13.4~dfsg+~1.11.4-3 [118 kB] 122s Get:82 http://ftpmaster.internal/ubuntu plucky-proposed/main ppc64el libjs-sphinxdoc all 8.1.3-5 [31.0 kB] 122s Get:83 http://ftpmaster.internal/ubuntu plucky/main ppc64el libjson-perl all 4.10000-1 [81.9 kB] 122s Get:84 http://ftpmaster.internal/ubuntu plucky/main ppc64el liblapack3 ppc64el 3.12.1-2 [2813 kB] 122s Get:85 http://ftpmaster.internal/ubuntu plucky/universe ppc64el liblbfgsb0 ppc64el 3.0+dfsg.4-1build1 [33.0 kB] 122s Get:86 http://ftpmaster.internal/ubuntu plucky/main ppc64el liblcms2-2 ppc64el 2.16-2 [243 kB] 122s Get:87 http://ftpmaster.internal/ubuntu plucky/main ppc64el liblerc4 ppc64el 4.0.0+ds-5ubuntu1 [298 kB] 122s Get:88 http://ftpmaster.internal/ubuntu plucky/universe ppc64el liblzf1 ppc64el 3.6-4 [7920 B] 122s Get:89 http://ftpmaster.internal/ubuntu plucky/main ppc64el zlib1g-dev ppc64el 1:1.3.dfsg+really1.3.1-1ubuntu1 [902 kB] 122s Get:90 http://ftpmaster.internal/ubuntu plucky/main ppc64el libpython3.13-dev ppc64el 3.13.2-1 [5971 kB] 123s Get:91 http://ftpmaster.internal/ubuntu plucky/main ppc64el libpython3-dev ppc64el 3.13.1-1~exp2 [10.5 kB] 123s Get:92 http://ftpmaster.internal/ubuntu plucky/main ppc64el libpython3.12-dev ppc64el 3.12.9-1 [6140 kB] 123s Get:93 http://ftpmaster.internal/ubuntu plucky/main ppc64el libpython3-all-dev ppc64el 3.13.1-1~exp2 [922 B] 123s Get:94 http://ftpmaster.internal/ubuntu plucky/universe ppc64el libqhull-r8.0 ppc64el 2020.2-6build1 [225 kB] 123s Get:95 http://ftpmaster.internal/ubuntu plucky/main ppc64el libraqm0 ppc64el 0.10.2-1 [19.2 kB] 123s Get:96 http://ftpmaster.internal/ubuntu plucky/main ppc64el libsharpyuv0 ppc64el 1.5.0-0.1 [22.3 kB] 123s Get:97 http://ftpmaster.internal/ubuntu plucky/universe ppc64el libsimde-dev all 0.8.2-1 [466 kB] 123s Get:98 http://ftpmaster.internal/ubuntu plucky/universe ppc64el libssw0 ppc64el 1.1-15 [24.2 kB] 123s Get:99 http://ftpmaster.internal/ubuntu plucky/universe ppc64el libssw-dev ppc64el 1.1-15 [26.2 kB] 123s Get:100 http://ftpmaster.internal/ubuntu plucky/main ppc64el libjbig0 ppc64el 2.1-6.1ubuntu2 [35.9 kB] 123s Get:101 http://ftpmaster.internal/ubuntu plucky/main ppc64el libwebp7 ppc64el 1.5.0-0.1 [315 kB] 123s Get:102 http://ftpmaster.internal/ubuntu plucky/main ppc64el libtiff6 ppc64el 4.5.1+git230720-4ubuntu4 [272 kB] 123s Get:103 http://ftpmaster.internal/ubuntu plucky/main ppc64el libwebpdemux2 ppc64el 1.5.0-0.1 [14.6 kB] 123s Get:104 http://ftpmaster.internal/ubuntu plucky/main ppc64el libwebpmux3 ppc64el 1.5.0-0.1 [31.1 kB] 123s Get:105 http://ftpmaster.internal/ubuntu plucky/main ppc64el libxslt1.1 ppc64el 1.1.39-0exp1ubuntu2 [191 kB] 123s Get:106 http://ftpmaster.internal/ubuntu plucky/universe ppc64el node-fortawesome-fontawesome-free all 6.7.2+ds1-1 [1653 kB] 123s Get:107 http://ftpmaster.internal/ubuntu plucky/universe ppc64el pybuild-plugin-autopkgtest all 6.20250108 [1744 B] 123s Get:108 http://ftpmaster.internal/ubuntu plucky/universe ppc64el python-biom-format-doc all 2.1.16-1build2 [57.5 kB] 123s Get:109 http://ftpmaster.internal/ubuntu plucky/universe ppc64el python-matplotlib-data all 3.8.3-3ubuntu2 [2929 kB] 124s Get:110 http://ftpmaster.internal/ubuntu plucky/main ppc64el python-numpy-doc all 1:1.26.4+ds-13 [5471 kB] 124s Get:111 http://ftpmaster.internal/ubuntu plucky/main ppc64el libjs-mathjax all 2.7.9+dfsg-1 [5665 kB] 125s Get:112 http://ftpmaster.internal/ubuntu plucky/universe ppc64el python-pandas-doc all 2.2.3+dfsg-8 [10.7 MB] 126s Get:113 http://ftpmaster.internal/ubuntu plucky/universe ppc64el python-skbio-doc all 0.6.2-4build1 [2342 kB] 126s Get:114 http://ftpmaster.internal/ubuntu plucky/universe ppc64el python3-accessible-pygments all 0.0.5-2 [790 kB] 126s Get:115 http://ftpmaster.internal/ubuntu plucky/main ppc64el python3-all ppc64el 3.13.1-1~exp2 [896 B] 126s Get:116 http://ftpmaster.internal/ubuntu plucky/main ppc64el python3.13-dev ppc64el 3.13.2-1 [508 kB] 126s Get:117 http://ftpmaster.internal/ubuntu plucky/main ppc64el python3-dev ppc64el 3.13.1-1~exp2 [26.7 kB] 126s Get:118 http://ftpmaster.internal/ubuntu plucky/main ppc64el python3.12-dev ppc64el 3.12.9-1 [505 kB] 126s Get:119 http://ftpmaster.internal/ubuntu plucky/main ppc64el python3-all-dev ppc64el 3.13.1-1~exp2 [918 B] 126s Get:120 http://ftpmaster.internal/ubuntu plucky/universe ppc64el python3-asttokens all 3.0.0-1 [20.4 kB] 126s Get:121 http://ftpmaster.internal/ubuntu plucky/main ppc64el python3-numpy ppc64el 1:1.26.4+ds-13 [5146 kB] 126s Get:122 http://ftpmaster.internal/ubuntu plucky/universe ppc64el python3-h5py-serial ppc64el 3.12.1-1 [1603 kB] 126s Get:123 http://ftpmaster.internal/ubuntu plucky/universe ppc64el python3-h5py all 3.12.1-1 [7970 B] 126s Get:124 http://ftpmaster.internal/ubuntu plucky/main ppc64el python3-click all 8.1.8-1 [79.8 kB] 126s Get:125 http://ftpmaster.internal/ubuntu plucky/main ppc64el python3-dateutil all 2.9.0-3 [80.2 kB] 126s Get:126 http://ftpmaster.internal/ubuntu plucky/main ppc64el python3-pytz all 2025.1-3 [162 kB] 126s Get:127 http://ftpmaster.internal/ubuntu plucky/main ppc64el python3-tz all 2025.1-3 [1866 B] 126s Get:128 http://ftpmaster.internal/ubuntu plucky/universe ppc64el python3-pandas-lib ppc64el 2.2.3+dfsg-8 [7343 kB] 127s Get:129 http://ftpmaster.internal/ubuntu plucky/universe ppc64el python3-pandas all 2.2.3+dfsg-8 [3112 kB] 127s Get:130 http://ftpmaster.internal/ubuntu plucky/main ppc64el python3-decorator all 5.1.1-5 [10.1 kB] 127s Get:131 http://ftpmaster.internal/ubuntu plucky/universe ppc64el python3-scipy ppc64el 1.14.1-4ubuntu1 [22.7 MB] 129s Get:132 http://ftpmaster.internal/ubuntu plucky/universe ppc64el python3-biom-format ppc64el 2.1.16-1build2 [183 kB] 129s Get:133 http://ftpmaster.internal/ubuntu plucky/universe ppc64el python3-brotli ppc64el 1.1.0-2build3 [423 kB] 129s Get:134 http://ftpmaster.internal/ubuntu plucky/main ppc64el python3-soupsieve all 2.6-1 [33.0 kB] 129s Get:135 http://ftpmaster.internal/ubuntu plucky/main ppc64el python3-bs4 all 4.13.3-1 [136 kB] 129s Get:136 http://ftpmaster.internal/ubuntu plucky/main ppc64el python3-msgpack ppc64el 1.0.3-3build3 [110 kB] 129s Get:137 http://ftpmaster.internal/ubuntu plucky/universe ppc64el python3-cachecontrol all 0.14.2-1 [18.7 kB] 129s Get:138 http://ftpmaster.internal/ubuntu plucky/universe ppc64el python3-contourpy ppc64el 1.3.1-1 [260 kB] 129s Get:139 http://ftpmaster.internal/ubuntu plucky/universe ppc64el python3-cycler all 0.12.1-1 [9716 B] 129s Get:140 http://ftpmaster.internal/ubuntu plucky/main ppc64el python3-defusedxml all 0.7.1-3 [42.2 kB] 129s Get:141 http://ftpmaster.internal/ubuntu plucky/main ppc64el python3.13-doc all 3.13.2-1 [14.2 MB] 130s Get:142 http://ftpmaster.internal/ubuntu plucky/main ppc64el python3-doc all 3.13.1-1~exp2 [10.4 kB] 130s Get:143 http://ftpmaster.internal/ubuntu plucky/main ppc64el python3-roman all 5.0-1 [10.3 kB] 130s Get:144 http://ftpmaster.internal/ubuntu plucky/main ppc64el python3-docutils all 0.21.2+dfsg-2 [409 kB] 130s Get:145 http://ftpmaster.internal/ubuntu plucky/universe ppc64el python3-executing all 2.2.0-0.1 [25.0 kB] 130s Get:146 http://ftpmaster.internal/ubuntu plucky/main ppc64el python3-platformdirs all 4.3.6-1 [16.8 kB] 130s Get:147 http://ftpmaster.internal/ubuntu plucky/universe ppc64el python3-fs all 2.4.16-6 [90.7 kB] 130s Get:148 http://ftpmaster.internal/ubuntu plucky/main ppc64el python3-lxml ppc64el 5.3.1-1 [1752 kB] 130s Get:149 http://ftpmaster.internal/ubuntu plucky/universe ppc64el python3-lz4 ppc64el 4.4.0+dfsg-1 [28.3 kB] 130s Get:150 http://ftpmaster.internal/ubuntu plucky/universe ppc64el python3-mpmath all 1.3.0-1 [425 kB] 130s Get:151 http://ftpmaster.internal/ubuntu plucky/universe ppc64el python3-sympy all 1.13.3-1 [4228 kB] 130s Get:152 http://ftpmaster.internal/ubuntu plucky/universe ppc64el python3-ufolib2 all 0.17.0+dfsg1-1 [33.5 kB] 130s Get:153 http://ftpmaster.internal/ubuntu plucky/universe ppc64el unicode-data all 15.1.0-1 [8878 kB] 131s Get:154 http://ftpmaster.internal/ubuntu plucky/universe ppc64el python3-fonttools ppc64el 4.55.3-2 [1722 kB] 131s Get:155 http://ftpmaster.internal/ubuntu plucky/universe ppc64el python3-hdmedians ppc64el 0.14.2-6 [201 kB] 131s Get:156 http://ftpmaster.internal/ubuntu plucky/main ppc64el python3-imagesize all 1.4.1-1 [6844 B] 131s Get:157 http://ftpmaster.internal/ubuntu plucky/universe ppc64el python3-iniconfig all 1.1.1-2 [6024 B] 131s Get:158 http://ftpmaster.internal/ubuntu plucky/universe ppc64el python3-parso all 0.8.4-1 [67.6 kB] 131s Get:159 http://ftpmaster.internal/ubuntu plucky/universe ppc64el python3-typeshed all 0.0~git20241223.ea91db2-1 [1548 kB] 131s Get:160 http://ftpmaster.internal/ubuntu plucky/universe ppc64el python3-jedi all 0.19.1+ds1-1 [693 kB] 131s Get:161 http://ftpmaster.internal/ubuntu plucky/universe ppc64el python3-traitlets all 5.14.3+really5.14.3-1 [71.5 kB] 131s Get:162 http://ftpmaster.internal/ubuntu plucky/universe ppc64el python3-matplotlib-inline all 0.1.6-2 [8784 B] 131s Get:163 http://ftpmaster.internal/ubuntu plucky/main ppc64el python3-wcwidth all 0.2.13+dfsg1-1 [26.3 kB] 131s Get:164 http://ftpmaster.internal/ubuntu plucky/universe ppc64el python3-prompt-toolkit all 3.0.50-1 [257 kB] 131s Get:165 http://ftpmaster.internal/ubuntu plucky/universe ppc64el python3-pure-eval all 0.2.3-1 [11.4 kB] 131s Get:166 http://ftpmaster.internal/ubuntu plucky/universe ppc64el python3-stack-data all 0.6.3-1 [22.0 kB] 131s Get:167 http://ftpmaster.internal/ubuntu plucky/main ppc64el python3-ptyprocess all 0.7.0-6 [14.8 kB] 131s Get:168 http://ftpmaster.internal/ubuntu plucky/main ppc64el python3-pexpect all 4.9-3 [48.1 kB] 131s Get:169 http://ftpmaster.internal/ubuntu plucky/universe ppc64el python3-ipython all 8.30.0-2 [569 kB] 131s Get:170 http://ftpmaster.internal/ubuntu plucky/universe ppc64el python3-joblib all 1.4.2-2 [205 kB] 131s Get:171 http://ftpmaster.internal/ubuntu plucky/universe ppc64el python3-kiwisolver ppc64el 1.4.7-3 [73.2 kB] 131s Get:172 http://ftpmaster.internal/ubuntu plucky/main ppc64el libopenjp2-7 ppc64el 2.5.0-2ubuntu3 [247 kB] 131s Get:173 http://ftpmaster.internal/ubuntu plucky/main ppc64el python3-pil ppc64el 11.1.0-5 [618 kB] 131s Get:174 http://ftpmaster.internal/ubuntu plucky/main ppc64el python3.12-tk ppc64el 3.12.9-1 [116 kB] 131s Get:175 http://ftpmaster.internal/ubuntu plucky/main ppc64el python3.13-tk ppc64el 3.13.2-1 [107 kB] 131s Get:176 http://ftpmaster.internal/ubuntu plucky/main ppc64el python3-tk ppc64el 3.13.1-1 [9772 B] 131s Get:177 http://ftpmaster.internal/ubuntu plucky/universe ppc64el python3-pil.imagetk ppc64el 11.1.0-5 [10.4 kB] 131s Get:178 http://ftpmaster.internal/ubuntu plucky/main ppc64el python3-packaging all 24.2-1 [51.5 kB] 131s Get:179 http://ftpmaster.internal/ubuntu plucky/universe ppc64el python3-matplotlib ppc64el 3.8.3-3ubuntu2 [4709 kB] 132s Get:180 http://ftpmaster.internal/ubuntu plucky/universe ppc64el python3-natsort all 8.0.2-2 [33.8 kB] 132s Get:181 http://ftpmaster.internal/ubuntu plucky-proposed/main ppc64el sphinx-common all 8.1.3-5 [663 kB] 132s Get:182 http://ftpmaster.internal/ubuntu plucky/main ppc64el python3-alabaster all 0.7.16-0.1 [18.5 kB] 132s Get:183 http://ftpmaster.internal/ubuntu plucky/main ppc64el python3-snowballstemmer all 2.2.0-4build1 [59.8 kB] 132s Get:184 http://ftpmaster.internal/ubuntu plucky-proposed/main ppc64el python3-sphinx all 8.1.3-5 [474 kB] 132s Get:185 http://ftpmaster.internal/ubuntu plucky/main ppc64el python3-tabulate all 0.9.0-1 [45.3 kB] 132s Get:186 http://ftpmaster.internal/ubuntu plucky/universe ppc64el python3-numpydoc all 1.8.0-1 [52.4 kB] 132s Get:187 http://ftpmaster.internal/ubuntu plucky/universe ppc64el python3-patsy all 1.0.1-1 [180 kB] 132s Get:188 http://ftpmaster.internal/ubuntu plucky/universe ppc64el python3-pluggy all 1.5.0-1 [21.0 kB] 132s Get:189 http://ftpmaster.internal/ubuntu plucky/universe ppc64el python3-pydata-sphinx-theme all 0.16.1+dfsg-3 [959 kB] 132s Get:190 http://ftpmaster.internal/ubuntu plucky/universe ppc64el python3-pytest all 8.3.4-1 [252 kB] 132s Get:191 http://ftpmaster.internal/ubuntu plucky/universe ppc64el python3-statsmodels-lib ppc64el 0.14.4+dfsg-1build2 [2657 kB] 132s Get:192 http://ftpmaster.internal/ubuntu plucky/universe ppc64el python3-statsmodels all 0.14.4+dfsg-1build2 [5012 kB] 133s Get:193 http://ftpmaster.internal/ubuntu plucky/universe ppc64el python3-skbio ppc64el 0.6.2-4build1 [1560 kB] 133s Get:194 http://ftpmaster.internal/ubuntu plucky/universe ppc64el python3-threadpoolctl all 3.1.0-1 [21.3 kB] 133s Get:195 http://ftpmaster.internal/ubuntu plucky/universe ppc64el python3-sklearn-lib ppc64el 1.4.2+dfsg-7build1 [6473 kB] 133s Get:196 http://ftpmaster.internal/ubuntu plucky/universe ppc64el python3-sklearn all 1.4.2+dfsg-7build1 [2258 kB] 133s Get:197 http://ftpmaster.internal/ubuntu plucky/universe ppc64el python3-sphinx-copybutton all 0.5.2-2 [16.6 kB] 133s Get:198 http://ftpmaster.internal/ubuntu plucky/universe ppc64el python3-sphinx-design all 0.6.1-1 [894 kB] 133s Get:199 http://ftpmaster.internal/ubuntu plucky/universe ppc64el python-scipy-doc all 1.14.1-4ubuntu1 [32.6 kB] 134s Fetched 235 MB in 17s (13.6 MB/s) 134s Selecting previously unselected package python3.12-minimal. 135s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 106420 files and directories currently installed.) 135s Preparing to unpack .../000-python3.12-minimal_3.12.9-1_ppc64el.deb ... 135s Unpacking python3.12-minimal (3.12.9-1) ... 135s Selecting previously unselected package sgml-base. 135s Preparing to unpack .../001-sgml-base_1.31_all.deb ... 135s Unpacking sgml-base (1.31) ... 135s Selecting previously unselected package python3.12. 135s Preparing to unpack .../002-python3.12_3.12.9-1_ppc64el.deb ... 135s Unpacking python3.12 (3.12.9-1) ... 135s Selecting previously unselected package architecture-properties:ppc64el. 135s Preparing to unpack .../003-architecture-properties_0.2.5_ppc64el.deb ... 135s Unpacking architecture-properties:ppc64el (0.2.5) ... 135s Selecting previously unselected package m4. 135s Preparing to unpack .../004-m4_1.4.19-5_ppc64el.deb ... 135s Unpacking m4 (1.4.19-5) ... 135s Selecting previously unselected package autoconf. 135s Preparing to unpack .../005-autoconf_2.72-3_all.deb ... 135s Unpacking autoconf (2.72-3) ... 135s Selecting previously unselected package autotools-dev. 135s Preparing to unpack .../006-autotools-dev_20220109.1_all.deb ... 135s Unpacking autotools-dev (20220109.1) ... 135s Selecting previously unselected package automake. 135s Preparing to unpack .../007-automake_1%3a1.17-3_all.deb ... 135s Unpacking automake (1:1.17-3) ... 135s Selecting previously unselected package autopoint. 135s Preparing to unpack .../008-autopoint_0.23.1-1_all.deb ... 135s Unpacking autopoint (0.23.1-1) ... 135s Selecting previously unselected package libtcl8.6:ppc64el. 135s Preparing to unpack .../009-libtcl8.6_8.6.16+dfsg-1_ppc64el.deb ... 135s Unpacking libtcl8.6:ppc64el (8.6.16+dfsg-1) ... 135s Selecting previously unselected package fonts-dejavu-mono. 135s Preparing to unpack .../010-fonts-dejavu-mono_2.37-8_all.deb ... 135s Unpacking fonts-dejavu-mono (2.37-8) ... 135s Selecting previously unselected package fonts-dejavu-core. 135s Preparing to unpack .../011-fonts-dejavu-core_2.37-8_all.deb ... 135s Unpacking fonts-dejavu-core (2.37-8) ... 135s Selecting previously unselected package fontconfig-config. 135s Preparing to unpack .../012-fontconfig-config_2.15.0-2ubuntu1_ppc64el.deb ... 136s Unpacking fontconfig-config (2.15.0-2ubuntu1) ... 136s Selecting previously unselected package libfontconfig1:ppc64el. 136s Preparing to unpack .../013-libfontconfig1_2.15.0-2ubuntu1_ppc64el.deb ... 136s Unpacking libfontconfig1:ppc64el (2.15.0-2ubuntu1) ... 136s Selecting previously unselected package libxrender1:ppc64el. 136s Preparing to unpack .../014-libxrender1_1%3a0.9.10-1.1build1_ppc64el.deb ... 136s Unpacking libxrender1:ppc64el (1:0.9.10-1.1build1) ... 136s Selecting previously unselected package libxft2:ppc64el. 136s Preparing to unpack .../015-libxft2_2.3.6-1build1_ppc64el.deb ... 136s Unpacking libxft2:ppc64el (2.3.6-1build1) ... 136s Selecting previously unselected package x11-common. 136s Preparing to unpack .../016-x11-common_1%3a7.7+23ubuntu3_all.deb ... 136s Unpacking x11-common (1:7.7+23ubuntu3) ... 136s Selecting previously unselected package libxss1:ppc64el. 136s Preparing to unpack .../017-libxss1_1%3a1.2.3-1build3_ppc64el.deb ... 136s Unpacking libxss1:ppc64el (1:1.2.3-1build3) ... 136s Selecting previously unselected package libtk8.6:ppc64el. 136s Preparing to unpack .../018-libtk8.6_8.6.16-1_ppc64el.deb ... 136s Unpacking libtk8.6:ppc64el (8.6.16-1) ... 136s Selecting previously unselected package tk8.6-blt2.5. 136s Preparing to unpack .../019-tk8.6-blt2.5_2.5.3+dfsg-7build1_ppc64el.deb ... 136s Unpacking tk8.6-blt2.5 (2.5.3+dfsg-7build1) ... 136s Selecting previously unselected package blt. 136s Preparing to unpack .../020-blt_2.5.3+dfsg-7build1_ppc64el.deb ... 136s Unpacking blt (2.5.3+dfsg-7build1) ... 136s Selecting previously unselected package libisl23:ppc64el. 136s Preparing to unpack .../021-libisl23_0.27-1_ppc64el.deb ... 136s Unpacking libisl23:ppc64el (0.27-1) ... 136s Selecting previously unselected package libmpc3:ppc64el. 136s Preparing to unpack .../022-libmpc3_1.3.1-1build2_ppc64el.deb ... 136s Unpacking libmpc3:ppc64el (1.3.1-1build2) ... 136s Selecting previously unselected package cpp-14-powerpc64le-linux-gnu. 136s Preparing to unpack .../023-cpp-14-powerpc64le-linux-gnu_14.2.0-17ubuntu1_ppc64el.deb ... 136s Unpacking cpp-14-powerpc64le-linux-gnu (14.2.0-17ubuntu1) ... 136s Selecting previously unselected package cpp-14. 136s Preparing to unpack .../024-cpp-14_14.2.0-17ubuntu1_ppc64el.deb ... 136s Unpacking cpp-14 (14.2.0-17ubuntu1) ... 136s Selecting previously unselected package cpp-powerpc64le-linux-gnu. 136s Preparing to unpack .../025-cpp-powerpc64le-linux-gnu_4%3a14.2.0-1ubuntu1_ppc64el.deb ... 136s Unpacking cpp-powerpc64le-linux-gnu (4:14.2.0-1ubuntu1) ... 137s Selecting previously unselected package cpp. 137s Preparing to unpack .../026-cpp_4%3a14.2.0-1ubuntu1_ppc64el.deb ... 137s Unpacking cpp (4:14.2.0-1ubuntu1) ... 137s Selecting previously unselected package libcc1-0:ppc64el. 137s Preparing to unpack .../027-libcc1-0_15-20250213-1ubuntu1_ppc64el.deb ... 137s Unpacking libcc1-0:ppc64el (15-20250213-1ubuntu1) ... 137s Selecting previously unselected package libgomp1:ppc64el. 137s Preparing to unpack .../028-libgomp1_15-20250213-1ubuntu1_ppc64el.deb ... 137s Unpacking libgomp1:ppc64el (15-20250213-1ubuntu1) ... 137s Selecting previously unselected package libitm1:ppc64el. 137s Preparing to unpack .../029-libitm1_15-20250213-1ubuntu1_ppc64el.deb ... 137s Unpacking libitm1:ppc64el (15-20250213-1ubuntu1) ... 137s Selecting previously unselected package libasan8:ppc64el. 137s Preparing to unpack .../030-libasan8_15-20250213-1ubuntu1_ppc64el.deb ... 137s Unpacking libasan8:ppc64el (15-20250213-1ubuntu1) ... 137s Selecting previously unselected package liblsan0:ppc64el. 137s Preparing to unpack .../031-liblsan0_15-20250213-1ubuntu1_ppc64el.deb ... 137s Unpacking liblsan0:ppc64el (15-20250213-1ubuntu1) ... 137s Selecting previously unselected package libtsan2:ppc64el. 137s Preparing to unpack .../032-libtsan2_15-20250213-1ubuntu1_ppc64el.deb ... 137s Unpacking libtsan2:ppc64el (15-20250213-1ubuntu1) ... 137s Selecting previously unselected package libubsan1:ppc64el. 137s Preparing to unpack .../033-libubsan1_15-20250213-1ubuntu1_ppc64el.deb ... 137s Unpacking libubsan1:ppc64el (15-20250213-1ubuntu1) ... 137s Selecting previously unselected package libquadmath0:ppc64el. 137s Preparing to unpack .../034-libquadmath0_15-20250213-1ubuntu1_ppc64el.deb ... 137s Unpacking libquadmath0:ppc64el (15-20250213-1ubuntu1) ... 137s Selecting previously unselected package libgcc-14-dev:ppc64el. 137s Preparing to unpack .../035-libgcc-14-dev_14.2.0-17ubuntu1_ppc64el.deb ... 137s Unpacking libgcc-14-dev:ppc64el (14.2.0-17ubuntu1) ... 137s Selecting previously unselected package gcc-14-powerpc64le-linux-gnu. 137s Preparing to unpack .../036-gcc-14-powerpc64le-linux-gnu_14.2.0-17ubuntu1_ppc64el.deb ... 137s Unpacking gcc-14-powerpc64le-linux-gnu (14.2.0-17ubuntu1) ... 137s Selecting previously unselected package gcc-14. 138s Preparing to unpack .../037-gcc-14_14.2.0-17ubuntu1_ppc64el.deb ... 138s Unpacking gcc-14 (14.2.0-17ubuntu1) ... 138s Selecting previously unselected package gcc-powerpc64le-linux-gnu. 138s Preparing to unpack .../038-gcc-powerpc64le-linux-gnu_4%3a14.2.0-1ubuntu1_ppc64el.deb ... 138s Unpacking gcc-powerpc64le-linux-gnu (4:14.2.0-1ubuntu1) ... 138s Selecting previously unselected package gcc. 138s Preparing to unpack .../039-gcc_4%3a14.2.0-1ubuntu1_ppc64el.deb ... 138s Unpacking gcc (4:14.2.0-1ubuntu1) ... 138s Selecting previously unselected package libstdc++-14-dev:ppc64el. 138s Preparing to unpack .../040-libstdc++-14-dev_14.2.0-17ubuntu1_ppc64el.deb ... 138s Unpacking libstdc++-14-dev:ppc64el (14.2.0-17ubuntu1) ... 138s Selecting previously unselected package g++-14-powerpc64le-linux-gnu. 138s Preparing to unpack .../041-g++-14-powerpc64le-linux-gnu_14.2.0-17ubuntu1_ppc64el.deb ... 138s Unpacking g++-14-powerpc64le-linux-gnu (14.2.0-17ubuntu1) ... 138s Selecting previously unselected package g++-14. 138s Preparing to unpack .../042-g++-14_14.2.0-17ubuntu1_ppc64el.deb ... 138s Unpacking g++-14 (14.2.0-17ubuntu1) ... 138s Selecting previously unselected package g++-powerpc64le-linux-gnu. 138s Preparing to unpack .../043-g++-powerpc64le-linux-gnu_4%3a14.2.0-1ubuntu1_ppc64el.deb ... 138s Unpacking g++-powerpc64le-linux-gnu (4:14.2.0-1ubuntu1) ... 138s Selecting previously unselected package g++. 138s Preparing to unpack .../044-g++_4%3a14.2.0-1ubuntu1_ppc64el.deb ... 138s Unpacking g++ (4:14.2.0-1ubuntu1) ... 138s Selecting previously unselected package build-essential. 138s Preparing to unpack .../045-build-essential_12.10ubuntu1_ppc64el.deb ... 138s Unpacking build-essential (12.10ubuntu1) ... 138s Selecting previously unselected package cython3. 138s Preparing to unpack .../046-cython3_3.0.11+dfsg-2ubuntu1_ppc64el.deb ... 138s Unpacking cython3 (3.0.11+dfsg-2ubuntu1) ... 139s Selecting previously unselected package libdebhelper-perl. 139s Preparing to unpack .../047-libdebhelper-perl_13.24.1ubuntu2_all.deb ... 139s Unpacking libdebhelper-perl (13.24.1ubuntu2) ... 139s Selecting previously unselected package libtool. 139s Preparing to unpack .../048-libtool_2.5.4-3build1_all.deb ... 139s Unpacking libtool (2.5.4-3build1) ... 139s Selecting previously unselected package dh-autoreconf. 139s Preparing to unpack .../049-dh-autoreconf_20_all.deb ... 139s Unpacking dh-autoreconf (20) ... 139s Selecting previously unselected package libarchive-zip-perl. 139s Preparing to unpack .../050-libarchive-zip-perl_1.68-1_all.deb ... 139s Unpacking libarchive-zip-perl (1.68-1) ... 139s Selecting previously unselected package libfile-stripnondeterminism-perl. 139s Preparing to unpack .../051-libfile-stripnondeterminism-perl_1.14.1-2_all.deb ... 139s Unpacking libfile-stripnondeterminism-perl (1.14.1-2) ... 139s Selecting previously unselected package dh-strip-nondeterminism. 139s Preparing to unpack .../052-dh-strip-nondeterminism_1.14.1-2_all.deb ... 139s Unpacking dh-strip-nondeterminism (1.14.1-2) ... 139s Selecting previously unselected package debugedit. 139s Preparing to unpack .../053-debugedit_1%3a5.1-2_ppc64el.deb ... 139s Unpacking debugedit (1:5.1-2) ... 139s Selecting previously unselected package dwz. 139s Preparing to unpack .../054-dwz_0.15-1build6_ppc64el.deb ... 139s Unpacking dwz (0.15-1build6) ... 139s Selecting previously unselected package gettext. 139s Preparing to unpack .../055-gettext_0.23.1-1_ppc64el.deb ... 139s Unpacking gettext (0.23.1-1) ... 140s Selecting previously unselected package intltool-debian. 140s Preparing to unpack .../056-intltool-debian_0.35.0+20060710.6_all.deb ... 140s Unpacking intltool-debian (0.35.0+20060710.6) ... 140s Selecting previously unselected package po-debconf. 140s Preparing to unpack .../057-po-debconf_1.0.21+nmu1_all.deb ... 140s Unpacking po-debconf (1.0.21+nmu1) ... 140s Selecting previously unselected package debhelper. 140s Preparing to unpack .../058-debhelper_13.24.1ubuntu2_all.deb ... 140s Unpacking debhelper (13.24.1ubuntu2) ... 140s Selecting previously unselected package dh-python. 140s Preparing to unpack .../059-dh-python_6.20250108_all.deb ... 140s Unpacking dh-python (6.20250108) ... 140s Selecting previously unselected package xml-core. 140s Preparing to unpack .../060-xml-core_0.19_all.deb ... 140s Unpacking xml-core (0.19) ... 140s Selecting previously unselected package docutils-common. 140s Preparing to unpack .../061-docutils-common_0.21.2+dfsg-2_all.deb ... 140s Unpacking docutils-common (0.21.2+dfsg-2) ... 140s Selecting previously unselected package fonts-lyx. 140s Preparing to unpack .../062-fonts-lyx_2.4.3-1_all.deb ... 140s Unpacking fonts-lyx (2.4.3-1) ... 140s Selecting previously unselected package fonts-mathjax. 140s Preparing to unpack .../063-fonts-mathjax_2.7.9+dfsg-1_all.deb ... 140s Unpacking fonts-mathjax (2.7.9+dfsg-1) ... 140s Selecting previously unselected package fonts-open-sans. 140s Preparing to unpack .../064-fonts-open-sans_1.11-2_all.deb ... 140s Unpacking fonts-open-sans (1.11-2) ... 140s Selecting previously unselected package libaec0:ppc64el. 140s Preparing to unpack .../065-libaec0_1.1.3-1_ppc64el.deb ... 140s Unpacking libaec0:ppc64el (1.1.3-1) ... 140s Selecting previously unselected package libblas3:ppc64el. 140s Preparing to unpack .../066-libblas3_3.12.1-2_ppc64el.deb ... 140s Unpacking libblas3:ppc64el (3.12.1-2) ... 140s Selecting previously unselected package libdeflate0:ppc64el. 140s Preparing to unpack .../067-libdeflate0_1.23-1_ppc64el.deb ... 140s Unpacking libdeflate0:ppc64el (1.23-1) ... 140s Selecting previously unselected package libexpat1-dev:ppc64el. 140s Preparing to unpack .../068-libexpat1-dev_2.6.4-1_ppc64el.deb ... 140s Unpacking libexpat1-dev:ppc64el (2.6.4-1) ... 140s Selecting previously unselected package libgfortran5:ppc64el. 140s Preparing to unpack .../069-libgfortran5_15-20250213-1ubuntu1_ppc64el.deb ... 140s Unpacking libgfortran5:ppc64el (15-20250213-1ubuntu1) ... 140s Selecting previously unselected package libgraphite2-3:ppc64el. 140s Preparing to unpack .../070-libgraphite2-3_1.3.14-2ubuntu1_ppc64el.deb ... 140s Unpacking libgraphite2-3:ppc64el (1.3.14-2ubuntu1) ... 140s Selecting previously unselected package libharfbuzz0b:ppc64el. 140s Preparing to unpack .../071-libharfbuzz0b_10.2.0-1_ppc64el.deb ... 140s Unpacking libharfbuzz0b:ppc64el (10.2.0-1) ... 140s Selecting previously unselected package libsz2:ppc64el. 140s Preparing to unpack .../072-libsz2_1.1.3-1_ppc64el.deb ... 140s Unpacking libsz2:ppc64el (1.1.3-1) ... 140s Selecting previously unselected package libhdf5-310:ppc64el. 140s Preparing to unpack .../073-libhdf5-310_1.14.5+repack-3_ppc64el.deb ... 140s Unpacking libhdf5-310:ppc64el (1.14.5+repack-3) ... 140s Selecting previously unselected package libhdf5-hl-310:ppc64el. 140s Preparing to unpack .../074-libhdf5-hl-310_1.14.5+repack-3_ppc64el.deb ... 140s Unpacking libhdf5-hl-310:ppc64el (1.14.5+repack-3) ... 140s Selecting previously unselected package libimagequant0:ppc64el. 140s Preparing to unpack .../075-libimagequant0_2.18.0-1build1_ppc64el.deb ... 140s Unpacking libimagequant0:ppc64el (2.18.0-1build1) ... 140s Selecting previously unselected package libjpeg-turbo8:ppc64el. 140s Preparing to unpack .../076-libjpeg-turbo8_2.1.5-3ubuntu2_ppc64el.deb ... 140s Unpacking libjpeg-turbo8:ppc64el (2.1.5-3ubuntu2) ... 140s Selecting previously unselected package libjpeg8:ppc64el. 140s Preparing to unpack .../077-libjpeg8_8c-2ubuntu11_ppc64el.deb ... 140s Unpacking libjpeg8:ppc64el (8c-2ubuntu11) ... 140s Selecting previously unselected package libjs-jquery. 140s Preparing to unpack .../078-libjs-jquery_3.6.1+dfsg+~3.5.14-1_all.deb ... 140s Unpacking libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... 140s Selecting previously unselected package libjs-jquery-ui. 140s Preparing to unpack .../079-libjs-jquery-ui_1.13.2+dfsg-1_all.deb ... 140s Unpacking libjs-jquery-ui (1.13.2+dfsg-1) ... 140s Selecting previously unselected package libjs-underscore. 140s Preparing to unpack .../080-libjs-underscore_1.13.4~dfsg+~1.11.4-3_all.deb ... 140s Unpacking libjs-underscore (1.13.4~dfsg+~1.11.4-3) ... 140s Selecting previously unselected package libjs-sphinxdoc. 140s Preparing to unpack .../081-libjs-sphinxdoc_8.1.3-5_all.deb ... 140s Unpacking libjs-sphinxdoc (8.1.3-5) ... 140s Selecting previously unselected package libjson-perl. 140s Preparing to unpack .../082-libjson-perl_4.10000-1_all.deb ... 140s Unpacking libjson-perl (4.10000-1) ... 140s Selecting previously unselected package liblapack3:ppc64el. 140s Preparing to unpack .../083-liblapack3_3.12.1-2_ppc64el.deb ... 140s Unpacking liblapack3:ppc64el (3.12.1-2) ... 140s Selecting previously unselected package liblbfgsb0:ppc64el. 140s Preparing to unpack .../084-liblbfgsb0_3.0+dfsg.4-1build1_ppc64el.deb ... 140s Unpacking liblbfgsb0:ppc64el (3.0+dfsg.4-1build1) ... 140s Selecting previously unselected package liblcms2-2:ppc64el. 140s Preparing to unpack .../085-liblcms2-2_2.16-2_ppc64el.deb ... 140s Unpacking liblcms2-2:ppc64el (2.16-2) ... 141s Selecting previously unselected package liblerc4:ppc64el. 141s Preparing to unpack .../086-liblerc4_4.0.0+ds-5ubuntu1_ppc64el.deb ... 141s Unpacking liblerc4:ppc64el (4.0.0+ds-5ubuntu1) ... 141s Selecting previously unselected package liblzf1:ppc64el. 141s Preparing to unpack .../087-liblzf1_3.6-4_ppc64el.deb ... 141s Unpacking liblzf1:ppc64el (3.6-4) ... 141s Selecting previously unselected package zlib1g-dev:ppc64el. 141s Preparing to unpack .../088-zlib1g-dev_1%3a1.3.dfsg+really1.3.1-1ubuntu1_ppc64el.deb ... 141s Unpacking zlib1g-dev:ppc64el (1:1.3.dfsg+really1.3.1-1ubuntu1) ... 141s Selecting previously unselected package libpython3.13-dev:ppc64el. 141s Preparing to unpack .../089-libpython3.13-dev_3.13.2-1_ppc64el.deb ... 141s Unpacking libpython3.13-dev:ppc64el (3.13.2-1) ... 141s Selecting previously unselected package libpython3-dev:ppc64el. 141s Preparing to unpack .../090-libpython3-dev_3.13.1-1~exp2_ppc64el.deb ... 141s Unpacking libpython3-dev:ppc64el (3.13.1-1~exp2) ... 141s Selecting previously unselected package libpython3.12-dev:ppc64el. 141s Preparing to unpack .../091-libpython3.12-dev_3.12.9-1_ppc64el.deb ... 141s Unpacking libpython3.12-dev:ppc64el (3.12.9-1) ... 141s Selecting previously unselected package libpython3-all-dev:ppc64el. 141s Preparing to unpack .../092-libpython3-all-dev_3.13.1-1~exp2_ppc64el.deb ... 141s Unpacking libpython3-all-dev:ppc64el (3.13.1-1~exp2) ... 141s Selecting previously unselected package libqhull-r8.0:ppc64el. 141s Preparing to unpack .../093-libqhull-r8.0_2020.2-6build1_ppc64el.deb ... 141s Unpacking libqhull-r8.0:ppc64el (2020.2-6build1) ... 142s Selecting previously unselected package libraqm0:ppc64el. 142s Preparing to unpack .../094-libraqm0_0.10.2-1_ppc64el.deb ... 142s Unpacking libraqm0:ppc64el (0.10.2-1) ... 142s Selecting previously unselected package libsharpyuv0:ppc64el. 142s Preparing to unpack .../095-libsharpyuv0_1.5.0-0.1_ppc64el.deb ... 142s Unpacking libsharpyuv0:ppc64el (1.5.0-0.1) ... 142s Selecting previously unselected package libsimde-dev. 142s Preparing to unpack .../096-libsimde-dev_0.8.2-1_all.deb ... 142s Unpacking libsimde-dev (0.8.2-1) ... 142s Selecting previously unselected package libssw0:ppc64el. 142s Preparing to unpack .../097-libssw0_1.1-15_ppc64el.deb ... 142s Unpacking libssw0:ppc64el (1.1-15) ... 142s Selecting previously unselected package libssw-dev:ppc64el. 142s Preparing to unpack .../098-libssw-dev_1.1-15_ppc64el.deb ... 142s Unpacking libssw-dev:ppc64el (1.1-15) ... 142s Selecting previously unselected package libjbig0:ppc64el. 142s Preparing to unpack .../099-libjbig0_2.1-6.1ubuntu2_ppc64el.deb ... 142s Unpacking libjbig0:ppc64el (2.1-6.1ubuntu2) ... 142s Selecting previously unselected package libwebp7:ppc64el. 142s Preparing to unpack .../100-libwebp7_1.5.0-0.1_ppc64el.deb ... 142s Unpacking libwebp7:ppc64el (1.5.0-0.1) ... 142s Selecting previously unselected package libtiff6:ppc64el. 142s Preparing to unpack .../101-libtiff6_4.5.1+git230720-4ubuntu4_ppc64el.deb ... 142s Unpacking libtiff6:ppc64el (4.5.1+git230720-4ubuntu4) ... 142s Selecting previously unselected package libwebpdemux2:ppc64el. 142s Preparing to unpack .../102-libwebpdemux2_1.5.0-0.1_ppc64el.deb ... 142s Unpacking libwebpdemux2:ppc64el (1.5.0-0.1) ... 142s Selecting previously unselected package libwebpmux3:ppc64el. 142s Preparing to unpack .../103-libwebpmux3_1.5.0-0.1_ppc64el.deb ... 142s Unpacking libwebpmux3:ppc64el (1.5.0-0.1) ... 142s Selecting previously unselected package libxslt1.1:ppc64el. 142s Preparing to unpack .../104-libxslt1.1_1.1.39-0exp1ubuntu2_ppc64el.deb ... 142s Unpacking libxslt1.1:ppc64el (1.1.39-0exp1ubuntu2) ... 142s Selecting previously unselected package node-fortawesome-fontawesome-free. 142s Preparing to unpack .../105-node-fortawesome-fontawesome-free_6.7.2+ds1-1_all.deb ... 142s Unpacking node-fortawesome-fontawesome-free (6.7.2+ds1-1) ... 143s Selecting previously unselected package pybuild-plugin-autopkgtest. 143s Preparing to unpack .../106-pybuild-plugin-autopkgtest_6.20250108_all.deb ... 143s Unpacking pybuild-plugin-autopkgtest (6.20250108) ... 143s Selecting previously unselected package python-biom-format-doc. 143s Preparing to unpack .../107-python-biom-format-doc_2.1.16-1build2_all.deb ... 143s Unpacking python-biom-format-doc (2.1.16-1build2) ... 143s Selecting previously unselected package python-matplotlib-data. 143s Preparing to unpack .../108-python-matplotlib-data_3.8.3-3ubuntu2_all.deb ... 143s Unpacking python-matplotlib-data (3.8.3-3ubuntu2) ... 143s Selecting previously unselected package python-numpy-doc. 143s Preparing to unpack .../109-python-numpy-doc_1%3a1.26.4+ds-13_all.deb ... 143s Unpacking python-numpy-doc (1:1.26.4+ds-13) ... 144s Selecting previously unselected package libjs-mathjax. 144s Preparing to unpack .../110-libjs-mathjax_2.7.9+dfsg-1_all.deb ... 144s Unpacking libjs-mathjax (2.7.9+dfsg-1) ... 145s Selecting previously unselected package python-pandas-doc. 145s Preparing to unpack .../111-python-pandas-doc_2.2.3+dfsg-8_all.deb ... 145s Unpacking python-pandas-doc (2.2.3+dfsg-8) ... 148s Selecting previously unselected package python-skbio-doc. 148s Preparing to unpack .../112-python-skbio-doc_0.6.2-4build1_all.deb ... 148s Unpacking python-skbio-doc (0.6.2-4build1) ... 149s Selecting previously unselected package python3-accessible-pygments. 149s Preparing to unpack .../113-python3-accessible-pygments_0.0.5-2_all.deb ... 149s Unpacking python3-accessible-pygments (0.0.5-2) ... 149s Selecting previously unselected package python3-all. 149s Preparing to unpack .../114-python3-all_3.13.1-1~exp2_ppc64el.deb ... 149s Unpacking python3-all (3.13.1-1~exp2) ... 149s Selecting previously unselected package python3.13-dev. 149s Preparing to unpack .../115-python3.13-dev_3.13.2-1_ppc64el.deb ... 149s Unpacking python3.13-dev (3.13.2-1) ... 149s Selecting previously unselected package python3-dev. 149s Preparing to unpack .../116-python3-dev_3.13.1-1~exp2_ppc64el.deb ... 149s Unpacking python3-dev (3.13.1-1~exp2) ... 149s Selecting previously unselected package python3.12-dev. 149s Preparing to unpack .../117-python3.12-dev_3.12.9-1_ppc64el.deb ... 149s Unpacking python3.12-dev (3.12.9-1) ... 149s Selecting previously unselected package python3-all-dev. 149s Preparing to unpack .../118-python3-all-dev_3.13.1-1~exp2_ppc64el.deb ... 149s Unpacking python3-all-dev (3.13.1-1~exp2) ... 149s Selecting previously unselected package python3-asttokens. 149s Preparing to unpack .../119-python3-asttokens_3.0.0-1_all.deb ... 149s Unpacking python3-asttokens (3.0.0-1) ... 149s Selecting previously unselected package python3-numpy. 149s Preparing to unpack .../120-python3-numpy_1%3a1.26.4+ds-13_ppc64el.deb ... 149s Unpacking python3-numpy (1:1.26.4+ds-13) ... 149s Selecting previously unselected package python3-h5py-serial. 149s Preparing to unpack .../121-python3-h5py-serial_3.12.1-1_ppc64el.deb ... 149s Unpacking python3-h5py-serial (3.12.1-1) ... 150s Selecting previously unselected package python3-h5py. 150s Preparing to unpack .../122-python3-h5py_3.12.1-1_all.deb ... 150s Unpacking python3-h5py (3.12.1-1) ... 150s Selecting previously unselected package python3-click. 150s Preparing to unpack .../123-python3-click_8.1.8-1_all.deb ... 150s Unpacking python3-click (8.1.8-1) ... 150s Selecting previously unselected package python3-dateutil. 150s Preparing to unpack .../124-python3-dateutil_2.9.0-3_all.deb ... 150s Unpacking python3-dateutil (2.9.0-3) ... 150s Selecting previously unselected package python3-pytz. 150s Preparing to unpack .../125-python3-pytz_2025.1-3_all.deb ... 150s Unpacking python3-pytz (2025.1-3) ... 150s Selecting previously unselected package python3-tz. 150s Preparing to unpack .../126-python3-tz_2025.1-3_all.deb ... 150s Unpacking python3-tz (2025.1-3) ... 150s Selecting previously unselected package python3-pandas-lib:ppc64el. 150s Preparing to unpack .../127-python3-pandas-lib_2.2.3+dfsg-8_ppc64el.deb ... 150s Unpacking python3-pandas-lib:ppc64el (2.2.3+dfsg-8) ... 150s Selecting previously unselected package python3-pandas. 150s Preparing to unpack .../128-python3-pandas_2.2.3+dfsg-8_all.deb ... 150s Unpacking python3-pandas (2.2.3+dfsg-8) ... 151s Selecting previously unselected package python3-decorator. 151s Preparing to unpack .../129-python3-decorator_5.1.1-5_all.deb ... 151s Unpacking python3-decorator (5.1.1-5) ... 151s Selecting previously unselected package python3-scipy. 151s Preparing to unpack .../130-python3-scipy_1.14.1-4ubuntu1_ppc64el.deb ... 151s Unpacking python3-scipy (1.14.1-4ubuntu1) ... 152s Selecting previously unselected package python3-biom-format. 152s Preparing to unpack .../131-python3-biom-format_2.1.16-1build2_ppc64el.deb ... 152s Unpacking python3-biom-format (2.1.16-1build2) ... 152s Selecting previously unselected package python3-brotli. 152s Preparing to unpack .../132-python3-brotli_1.1.0-2build3_ppc64el.deb ... 152s Unpacking python3-brotli (1.1.0-2build3) ... 152s Selecting previously unselected package python3-soupsieve. 152s Preparing to unpack .../133-python3-soupsieve_2.6-1_all.deb ... 152s Unpacking python3-soupsieve (2.6-1) ... 152s Selecting previously unselected package python3-bs4. 152s Preparing to unpack .../134-python3-bs4_4.13.3-1_all.deb ... 152s Unpacking python3-bs4 (4.13.3-1) ... 152s Selecting previously unselected package python3-msgpack. 152s Preparing to unpack .../135-python3-msgpack_1.0.3-3build3_ppc64el.deb ... 152s Unpacking python3-msgpack (1.0.3-3build3) ... 152s Selecting previously unselected package python3-cachecontrol. 152s Preparing to unpack .../136-python3-cachecontrol_0.14.2-1_all.deb ... 152s Unpacking python3-cachecontrol (0.14.2-1) ... 152s Selecting previously unselected package python3-contourpy. 152s Preparing to unpack .../137-python3-contourpy_1.3.1-1_ppc64el.deb ... 152s Unpacking python3-contourpy (1.3.1-1) ... 152s Selecting previously unselected package python3-cycler. 152s Preparing to unpack .../138-python3-cycler_0.12.1-1_all.deb ... 152s Unpacking python3-cycler (0.12.1-1) ... 152s Selecting previously unselected package python3-defusedxml. 152s Preparing to unpack .../139-python3-defusedxml_0.7.1-3_all.deb ... 152s Unpacking python3-defusedxml (0.7.1-3) ... 152s Selecting previously unselected package python3.13-doc. 152s Preparing to unpack .../140-python3.13-doc_3.13.2-1_all.deb ... 152s Unpacking python3.13-doc (3.13.2-1) ... 153s Selecting previously unselected package python3-doc. 153s Preparing to unpack .../141-python3-doc_3.13.1-1~exp2_all.deb ... 153s Unpacking python3-doc (3.13.1-1~exp2) ... 153s Selecting previously unselected package python3-roman. 153s Preparing to unpack .../142-python3-roman_5.0-1_all.deb ... 153s Unpacking python3-roman (5.0-1) ... 153s Selecting previously unselected package python3-docutils. 153s Preparing to unpack .../143-python3-docutils_0.21.2+dfsg-2_all.deb ... 153s Unpacking python3-docutils (0.21.2+dfsg-2) ... 153s Selecting previously unselected package python3-executing. 153s Preparing to unpack .../144-python3-executing_2.2.0-0.1_all.deb ... 153s Unpacking python3-executing (2.2.0-0.1) ... 153s Selecting previously unselected package python3-platformdirs. 153s Preparing to unpack .../145-python3-platformdirs_4.3.6-1_all.deb ... 153s Unpacking python3-platformdirs (4.3.6-1) ... 153s Selecting previously unselected package python3-fs. 153s Preparing to unpack .../146-python3-fs_2.4.16-6_all.deb ... 153s Unpacking python3-fs (2.4.16-6) ... 153s Selecting previously unselected package python3-lxml:ppc64el. 153s Preparing to unpack .../147-python3-lxml_5.3.1-1_ppc64el.deb ... 153s Unpacking python3-lxml:ppc64el (5.3.1-1) ... 153s Selecting previously unselected package python3-lz4. 153s Preparing to unpack .../148-python3-lz4_4.4.0+dfsg-1_ppc64el.deb ... 153s Unpacking python3-lz4 (4.4.0+dfsg-1) ... 153s Selecting previously unselected package python3-mpmath. 153s Preparing to unpack .../149-python3-mpmath_1.3.0-1_all.deb ... 153s Unpacking python3-mpmath (1.3.0-1) ... 153s Selecting previously unselected package python3-sympy. 153s Preparing to unpack .../150-python3-sympy_1.13.3-1_all.deb ... 153s Unpacking python3-sympy (1.13.3-1) ... 154s Selecting previously unselected package python3-ufolib2. 154s Preparing to unpack .../151-python3-ufolib2_0.17.0+dfsg1-1_all.deb ... 154s Unpacking python3-ufolib2 (0.17.0+dfsg1-1) ... 154s Selecting previously unselected package unicode-data. 154s Preparing to unpack .../152-unicode-data_15.1.0-1_all.deb ... 154s Unpacking unicode-data (15.1.0-1) ... 154s Selecting previously unselected package python3-fonttools. 154s Preparing to unpack .../153-python3-fonttools_4.55.3-2_ppc64el.deb ... 154s Unpacking python3-fonttools (4.55.3-2) ... 154s Selecting previously unselected package python3-hdmedians. 154s Preparing to unpack .../154-python3-hdmedians_0.14.2-6_ppc64el.deb ... 155s Unpacking python3-hdmedians (0.14.2-6) ... 155s Selecting previously unselected package python3-imagesize. 155s Preparing to unpack .../155-python3-imagesize_1.4.1-1_all.deb ... 155s Unpacking python3-imagesize (1.4.1-1) ... 155s Selecting previously unselected package python3-iniconfig. 155s Preparing to unpack .../156-python3-iniconfig_1.1.1-2_all.deb ... 155s Unpacking python3-iniconfig (1.1.1-2) ... 155s Selecting previously unselected package python3-parso. 155s Preparing to unpack .../157-python3-parso_0.8.4-1_all.deb ... 155s Unpacking python3-parso (0.8.4-1) ... 155s Selecting previously unselected package python3-typeshed. 155s Preparing to unpack .../158-python3-typeshed_0.0~git20241223.ea91db2-1_all.deb ... 155s Unpacking python3-typeshed (0.0~git20241223.ea91db2-1) ... 156s Selecting previously unselected package python3-jedi. 156s Preparing to unpack .../159-python3-jedi_0.19.1+ds1-1_all.deb ... 156s Unpacking python3-jedi (0.19.1+ds1-1) ... 156s Selecting previously unselected package python3-traitlets. 156s Preparing to unpack .../160-python3-traitlets_5.14.3+really5.14.3-1_all.deb ... 156s Unpacking python3-traitlets (5.14.3+really5.14.3-1) ... 156s Selecting previously unselected package python3-matplotlib-inline. 156s Preparing to unpack .../161-python3-matplotlib-inline_0.1.6-2_all.deb ... 156s Unpacking python3-matplotlib-inline (0.1.6-2) ... 156s Selecting previously unselected package python3-wcwidth. 156s Preparing to unpack .../162-python3-wcwidth_0.2.13+dfsg1-1_all.deb ... 156s Unpacking python3-wcwidth (0.2.13+dfsg1-1) ... 156s Selecting previously unselected package python3-prompt-toolkit. 156s Preparing to unpack .../163-python3-prompt-toolkit_3.0.50-1_all.deb ... 156s Unpacking python3-prompt-toolkit (3.0.50-1) ... 156s Selecting previously unselected package python3-pure-eval. 156s Preparing to unpack .../164-python3-pure-eval_0.2.3-1_all.deb ... 156s Unpacking python3-pure-eval (0.2.3-1) ... 156s Selecting previously unselected package python3-stack-data. 156s Preparing to unpack .../165-python3-stack-data_0.6.3-1_all.deb ... 156s Unpacking python3-stack-data (0.6.3-1) ... 156s Selecting previously unselected package python3-ptyprocess. 156s Preparing to unpack .../166-python3-ptyprocess_0.7.0-6_all.deb ... 156s Unpacking python3-ptyprocess (0.7.0-6) ... 156s Selecting previously unselected package python3-pexpect. 156s Preparing to unpack .../167-python3-pexpect_4.9-3_all.deb ... 156s Unpacking python3-pexpect (4.9-3) ... 156s Selecting previously unselected package python3-ipython. 156s Preparing to unpack .../168-python3-ipython_8.30.0-2_all.deb ... 156s Unpacking python3-ipython (8.30.0-2) ... 157s Selecting previously unselected package python3-joblib. 157s Preparing to unpack .../169-python3-joblib_1.4.2-2_all.deb ... 157s Unpacking python3-joblib (1.4.2-2) ... 157s Selecting previously unselected package python3-kiwisolver. 157s Preparing to unpack .../170-python3-kiwisolver_1.4.7-3_ppc64el.deb ... 157s Unpacking python3-kiwisolver (1.4.7-3) ... 157s Selecting previously unselected package libopenjp2-7:ppc64el. 157s Preparing to unpack .../171-libopenjp2-7_2.5.0-2ubuntu3_ppc64el.deb ... 157s Unpacking libopenjp2-7:ppc64el (2.5.0-2ubuntu3) ... 157s Selecting previously unselected package python3-pil:ppc64el. 157s Preparing to unpack .../172-python3-pil_11.1.0-5_ppc64el.deb ... 157s Unpacking python3-pil:ppc64el (11.1.0-5) ... 157s Selecting previously unselected package python3.12-tk. 157s Preparing to unpack .../173-python3.12-tk_3.12.9-1_ppc64el.deb ... 157s Unpacking python3.12-tk (3.12.9-1) ... 157s Selecting previously unselected package python3.13-tk. 157s Preparing to unpack .../174-python3.13-tk_3.13.2-1_ppc64el.deb ... 157s Unpacking python3.13-tk (3.13.2-1) ... 157s Selecting previously unselected package python3-tk:ppc64el. 157s Preparing to unpack .../175-python3-tk_3.13.1-1_ppc64el.deb ... 157s Unpacking python3-tk:ppc64el (3.13.1-1) ... 157s Selecting previously unselected package python3-pil.imagetk:ppc64el. 157s Preparing to unpack .../176-python3-pil.imagetk_11.1.0-5_ppc64el.deb ... 157s Unpacking python3-pil.imagetk:ppc64el (11.1.0-5) ... 157s Selecting previously unselected package python3-packaging. 157s Preparing to unpack .../177-python3-packaging_24.2-1_all.deb ... 157s Unpacking python3-packaging (24.2-1) ... 157s Selecting previously unselected package python3-matplotlib. 157s Preparing to unpack .../178-python3-matplotlib_3.8.3-3ubuntu2_ppc64el.deb ... 157s Unpacking python3-matplotlib (3.8.3-3ubuntu2) ... 157s Selecting previously unselected package python3-natsort. 157s Preparing to unpack .../179-python3-natsort_8.0.2-2_all.deb ... 157s Unpacking python3-natsort (8.0.2-2) ... 157s Selecting previously unselected package sphinx-common. 157s Preparing to unpack .../180-sphinx-common_8.1.3-5_all.deb ... 157s Unpacking sphinx-common (8.1.3-5) ... 158s Selecting previously unselected package python3-alabaster. 158s Preparing to unpack .../181-python3-alabaster_0.7.16-0.1_all.deb ... 158s Unpacking python3-alabaster (0.7.16-0.1) ... 158s Selecting previously unselected package python3-snowballstemmer. 158s Preparing to unpack .../182-python3-snowballstemmer_2.2.0-4build1_all.deb ... 158s Unpacking python3-snowballstemmer (2.2.0-4build1) ... 158s Selecting previously unselected package python3-sphinx. 158s Preparing to unpack .../183-python3-sphinx_8.1.3-5_all.deb ... 158s Unpacking python3-sphinx (8.1.3-5) ... 158s Selecting previously unselected package python3-tabulate. 158s Preparing to unpack .../184-python3-tabulate_0.9.0-1_all.deb ... 158s Unpacking python3-tabulate (0.9.0-1) ... 158s Selecting previously unselected package python3-numpydoc. 158s Preparing to unpack .../185-python3-numpydoc_1.8.0-1_all.deb ... 158s Unpacking python3-numpydoc (1.8.0-1) ... 158s Selecting previously unselected package python3-patsy. 158s Preparing to unpack .../186-python3-patsy_1.0.1-1_all.deb ... 158s Unpacking python3-patsy (1.0.1-1) ... 158s Selecting previously unselected package python3-pluggy. 158s Preparing to unpack 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159s Preparing to unpack .../192-python3-skbio_0.6.2-4build1_ppc64el.deb ... 159s Unpacking python3-skbio (0.6.2-4build1) ... 159s Selecting previously unselected package python3-threadpoolctl. 159s Preparing to unpack .../193-python3-threadpoolctl_3.1.0-1_all.deb ... 159s Unpacking python3-threadpoolctl (3.1.0-1) ... 159s Selecting previously unselected package python3-sklearn-lib:ppc64el. 159s Preparing to unpack .../194-python3-sklearn-lib_1.4.2+dfsg-7build1_ppc64el.deb ... 159s Unpacking python3-sklearn-lib:ppc64el (1.4.2+dfsg-7build1) ... 159s Selecting previously unselected package python3-sklearn. 159s Preparing to unpack .../195-python3-sklearn_1.4.2+dfsg-7build1_all.deb ... 159s Unpacking python3-sklearn (1.4.2+dfsg-7build1) ... 160s Selecting previously unselected package python3-sphinx-copybutton. 160s Preparing to unpack .../196-python3-sphinx-copybutton_0.5.2-2_all.deb ... 160s Unpacking python3-sphinx-copybutton (0.5.2-2) ... 160s Selecting previously unselected package python3-sphinx-design. 160s Preparing to unpack .../197-python3-sphinx-design_0.6.1-1_all.deb ... 160s Unpacking python3-sphinx-design (0.6.1-1) ... 160s Selecting previously unselected package python-scipy-doc. 160s Preparing to unpack .../198-python-scipy-doc_1.14.1-4ubuntu1_all.deb ... 160s Unpacking python-scipy-doc (1.14.1-4ubuntu1) ... 160s Setting up dh-python (6.20250108) ... 160s Setting up libgraphite2-3:ppc64el (1.3.14-2ubuntu1) ... 160s Setting up libsimde-dev (0.8.2-1) ... 160s Setting up liblcms2-2:ppc64el (2.16-2) ... 160s Setting up python3-iniconfig (1.1.1-2) ... 161s Setting up python3.12-minimal (3.12.9-1) ... 163s Setting up libsharpyuv0:ppc64el (1.5.0-0.1) ... 163s Setting up python3-pure-eval (0.2.3-1) ... 163s Setting up fonts-mathjax (2.7.9+dfsg-1) ... 163s Setting up liblerc4:ppc64el (4.0.0+ds-5ubuntu1) ... 163s Setting up libjs-mathjax (2.7.9+dfsg-1) ... 163s Setting up libxrender1:ppc64el (1:0.9.10-1.1build1) ... 163s Setting up python3-joblib (1.4.2-2) ... 164s Setting up python3-parso (0.8.4-1) ... 165s Setting up python3-lz4 (4.4.0+dfsg-1) ... 165s Setting up python3-defusedxml (0.7.1-3) ... 165s Setting up libarchive-zip-perl (1.68-1) ... 165s Setting up python3-asttokens (3.0.0-1) ... 165s Setting up architecture-properties:ppc64el (0.2.5) ... 165s Setting up python3-alabaster (0.7.16-0.1) ... 165s Setting up fonts-lyx (2.4.3-1) ... 165s Setting up libdebhelper-perl (13.24.1ubuntu2) ... 165s Setting up python3.12 (3.12.9-1) ... 168s Setting up python3-threadpoolctl (3.1.0-1) ... 168s Setting up x11-common (1:7.7+23ubuntu3) ... 169s Setting up libdeflate0:ppc64el (1.23-1) ... 169s Setting up python3-tabulate (0.9.0-1) ... 169s Setting up m4 (1.4.19-5) ... 169s Setting up libqhull-r8.0:ppc64el (2020.2-6build1) ... 169s Setting up python3-all (3.13.1-1~exp2) ... 169s Setting up python3-pytz (2025.1-3) ... 170s Setting up node-fortawesome-fontawesome-free (6.7.2+ds1-1) ... 170s Setting up libgomp1:ppc64el (15-20250213-1ubuntu1) ... 170s Setting up python3-click (8.1.8-1) ... 170s Setting up fonts-open-sans (1.11-2) ... 170s Setting up libjbig0:ppc64el (2.1-6.1ubuntu2) ... 170s Setting up libaec0:ppc64el (1.1.3-1) ... 170s Setting up python3-platformdirs (4.3.6-1) ... 170s Setting up python3-tz (2025.1-3) ... 170s Setting up python3-natsort (8.0.2-2) ... 171s Setting up python3-fs (2.4.16-6) ... 171s Setting up unicode-data (15.1.0-1) ... 171s Setting up python3-roman (5.0-1) ... 171s Setting up python3-decorator (5.1.1-5) ... 171s Setting up autotools-dev (20220109.1) ... 171s Setting up libblas3:ppc64el (3.12.1-2) ... 172s update-alternatives: using /usr/lib/powerpc64le-linux-gnu/blas/libblas.so.3 to provide /usr/lib/powerpc64le-linux-gnu/libblas.so.3 (libblas.so.3-powerpc64le-linux-gnu) in auto mode 172s Setting up python3-packaging (24.2-1) ... 172s Setting up libexpat1-dev:ppc64el (2.6.4-1) ... 172s Setting up python3-wcwidth (0.2.13+dfsg1-1) ... 172s Setting up python3-accessible-pygments (0.0.5-2) ... 172s Setting up python3-typeshed (0.0~git20241223.ea91db2-1) ... 172s Setting up python3-executing (2.2.0-0.1) ... 173s Setting up python3-snowballstemmer (2.2.0-4build1) ... 173s Setting up python3-brotli (1.1.0-2build3) ... 174s Setting up liblzf1:ppc64el (3.6-4) ... 174s Setting up libquadmath0:ppc64el (15-20250213-1ubuntu1) ... 174s Setting up python3-cycler (0.12.1-1) ... 174s Setting up libimagequant0:ppc64el (2.18.0-1build1) ... 174s Setting up fonts-dejavu-mono (2.37-8) ... 174s Setting up python3-kiwisolver (1.4.7-3) ... 174s Setting up libmpc3:ppc64el (1.3.1-1build2) ... 174s Setting up cython3 (3.0.11+dfsg-2ubuntu1) ... 177s Setting up libtcl8.6:ppc64el (8.6.16+dfsg-1) ... 177s Setting up autopoint (0.23.1-1) ... 177s Setting up fonts-dejavu-core (2.37-8) ... 177s Setting up libjpeg-turbo8:ppc64el (2.1.5-3ubuntu2) ... 177s Setting up libgfortran5:ppc64el (15-20250213-1ubuntu1) ... 177s Setting up autoconf (2.72-3) ... 177s Setting up python3-pluggy (1.5.0-1) ... 177s Setting up libwebp7:ppc64el (1.5.0-0.1) ... 177s Setting up libubsan1:ppc64el (15-20250213-1ubuntu1) ... 177s Setting up zlib1g-dev:ppc64el (1:1.3.dfsg+really1.3.1-1ubuntu1) ... 177s Setting up dwz (0.15-1build6) ... 177s Setting up python3-traitlets (5.14.3+really5.14.3-1) ... 178s Setting up libasan8:ppc64el (15-20250213-1ubuntu1) ... 178s Setting up libjson-perl (4.10000-1) ... 178s Setting up libxslt1.1:ppc64el (1.1.39-0exp1ubuntu2) ... 178s Setting up debugedit (1:5.1-2) ... 178s Setting up libopenjp2-7:ppc64el (2.5.0-2ubuntu3) ... 178s Setting up libharfbuzz0b:ppc64el (10.2.0-1) ... 178s Setting up python3-dateutil (2.9.0-3) ... 178s Setting up sgml-base (1.31) ... 178s Setting up python3-msgpack (1.0.3-3build3) ... 179s Setting up libxss1:ppc64el (1:1.2.3-1build3) ... 179s Setting up python3-cachecontrol (0.14.2-1) ... 179s Setting up libtsan2:ppc64el (15-20250213-1ubuntu1) ... 179s Setting up libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... 179s Setting up python3-mpmath (1.3.0-1) ... 181s Setting up libisl23:ppc64el (0.27-1) ... 181s Setting up python-matplotlib-data (3.8.3-3ubuntu2) ... 181s Setting up libwebpmux3:ppc64el (1.5.0-0.1) ... 181s Setting up python3-stack-data (0.6.3-1) ... 181s Setting up libssw0:ppc64el (1.1-15) ... 181s Setting up python3-soupsieve (2.6-1) ... 182s Setting up libcc1-0:ppc64el (15-20250213-1ubuntu1) ... 182s Setting up liblsan0:ppc64el (15-20250213-1ubuntu1) ... 182s Setting up libsz2:ppc64el (1.1.3-1) ... 182s Setting up libitm1:ppc64el (15-20250213-1ubuntu1) ... 182s Setting up libjs-underscore (1.13.4~dfsg+~1.11.4-3) ... 182s Setting up python3-imagesize (1.4.1-1) ... 182s Setting up python3-ptyprocess (0.7.0-6) ... 182s Setting up libjpeg8:ppc64el (8c-2ubuntu11) ... 182s Setting up automake (1:1.17-3) ... 182s update-alternatives: using /usr/bin/automake-1.17 to provide /usr/bin/automake (automake) in auto mode 182s Setting up python3-prompt-toolkit (3.0.50-1) ... 183s Setting up libfile-stripnondeterminism-perl (1.14.1-2) ... 183s Setting up python3-sympy (1.13.3-1) ... 201s Setting up liblapack3:ppc64el (3.12.1-2) ... 201s update-alternatives: using /usr/lib/powerpc64le-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/powerpc64le-linux-gnu/liblapack.so.3 (liblapack.so.3-powerpc64le-linux-gnu) in auto mode 201s Setting up gettext (0.23.1-1) ... 201s Setting up python3-jedi (0.19.1+ds1-1) ... 201s Setting up libssw-dev:ppc64el (1.1-15) ... 201s Setting up fontconfig-config (2.15.0-2ubuntu1) ... 202s Setting up python3-pytest (8.3.4-1) ... 202s Setting up libwebpdemux2:ppc64el (1.5.0-0.1) ... 202s Setting up libpython3.12-dev:ppc64el (3.12.9-1) ... 203s Setting up python3-bs4 (4.13.3-1) ... 203s Setting up intltool-debian (0.35.0+20060710.6) ... 203s Setting up python3-matplotlib-inline (0.1.6-2) ... 203s Setting up python3.13-doc (3.13.2-1) ... 203s Setting up libjs-jquery-ui (1.13.2+dfsg-1) ... 203s Setting up python3-pexpect (4.9-3) ... 204s Setting up libraqm0:ppc64el (0.10.2-1) ... 204s Setting up 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Processing triggers for man-db (2.13.0-1) ... 265s Processing triggers for install-info (7.1.1-1) ... 266s Processing triggers for sgml-base (1.31) ... 266s Setting up docutils-common (0.21.2+dfsg-2) ... 266s Processing triggers for sgml-base (1.31) ... 266s Setting up python3-docutils (0.21.2+dfsg-2) ... 267s Setting up python3-sphinx (8.1.3-5) ... 269s Setting up python3-sphinx-copybutton (0.5.2-2) ... 269s Setting up python3-sphinx-design (0.6.1-1) ... 269s Setting up python3-numpydoc (1.8.0-1) ... 270s Setting up python3-pydata-sphinx-theme (0.16.1+dfsg-3) ... 272s autopkgtest [22:16:01]: test pybuild-autopkgtest: pybuild-autopkgtest 272s autopkgtest [22:16:01]: test pybuild-autopkgtest: [----------------------- 272s pybuild-autopkgtest 273s I: pybuild base:311: cd /tmp/autopkgtest.HUtTKH/autopkgtest_tmp/build; python3.12 -m pytest --pyargs skbio 278s ============================= test session starts ============================== 278s platform linux -- Python 3.12.9, pytest-8.3.4, pluggy-1.5.0 278s rootdir: /tmp/autopkgtest.HUtTKH/autopkgtest_tmp/build 278s configfile: pyproject.toml 278s plugins: typeguard-4.4.1 278s collected 2793 items 278s 279s alignment/tests/test_pairwise.py ......................... [ 0%] 279s alignment/tests/test_path.py ................. [ 1%] 279s alignment/tests/test_ssw.py ........................... [ 2%] 279s alignment/tests/test_tabular_msa.py .................................... [ 3%] 280s ........................................................................ [ 6%] 281s ........................................................................ [ 8%] 283s ........................................................................ [ 11%] 283s ........................................................................ [ 14%] 283s ........................................................................ [ 16%] 283s ..... [ 16%] 283s diversity/alpha/tests/test_ace.py .. [ 16%] 287s diversity/alpha/tests/test_base.py ............................... [ 18%] 287s diversity/alpha/tests/test_chao1.py ... [ 18%] 287s diversity/alpha/tests/test_gini.py .... [ 18%] 293s diversity/alpha/tests/test_lladser.py ............ [ 18%] 293s diversity/alpha/tests/test_pd.py ................ [ 19%] 294s diversity/beta/tests/test_unifrac.py ............................ [ 20%] 294s diversity/tests/test_block.py ........... [ 20%] 294s diversity/tests/test_driver.py ..................................... [ 21%] 294s diversity/tests/test_util.py ................ [ 22%] 294s embedding/tests/test_embedding.py ................... [ 23%] 294s embedding/tests/test_protein.py .............. [ 23%] 294s io/format/tests/test_base.py ................................ [ 24%] 294s io/format/tests/test_binary_dm.py ......... [ 25%] 294s io/format/tests/test_biom.py ... [ 25%] 295s io/format/tests/test_blast6.py ........... [ 25%] 295s io/format/tests/test_blast7.py .............. [ 26%] 295s io/format/tests/test_clustal.py ............. [ 26%] 295s io/format/tests/test_embed.py ........ [ 26%] 297s io/format/tests/test_embl.py ............................... [ 28%] 297s io/format/tests/test_emptyfile.py .. [ 28%] 303s io/format/tests/test_fasta.py ................ [ 28%] 308s io/format/tests/test_fastq.py ............... [ 29%] 309s io/format/tests/test_genbank.py ..................... [ 30%] 310s io/format/tests/test_gff3.py ........................ [ 30%] 310s io/format/tests/test_lsmat.py ....... [ 31%] 310s io/format/tests/test_newick.py ....... [ 31%] 310s io/format/tests/test_ordination.py ..... [ 31%] 311s io/format/tests/test_phylip.py ....... [ 31%] 312s io/format/tests/test_qseq.py ...... [ 32%] 312s io/format/tests/test_sample_metadata.py .... [ 32%] 312s io/format/tests/test_sequence_feature_vocabulary.py .... [ 32%] 313s io/format/tests/test_stockholm.py ...................................... [ 33%] 313s ..................................... [ 34%] 313s io/format/tests/test_taxdump.py ...... [ 35%] 313s io/tests/test_iosources.py .......... [ 35%] 313s io/tests/test_registry.py .............................................. [ 37%] 314s ................................................ [ 38%] 316s io/tests/test_util.py .........................................sssssssss [ 40%] 318s sssssssssssssssssssss................................................... [ 43%] 323s ........................................................................ [ 45%] 325s .......................... [ 46%] 326s metadata/tests/test_enan.py ... [ 46%] 327s metadata/tests/test_intersection.py ............... [ 47%] 327s metadata/tests/test_interval.py ........................................ [ 48%] 327s ............................... [ 49%] 328s metadata/tests/test_io.py .............................................. [ 51%] 329s ............................................................ [ 53%] 329s metadata/tests/test_metadata.py ........................................ [ 55%] 329s .................... [ 55%] 329s metadata/tests/test_metadata_column.py ................................. [ 57%] 330s ........................................ [ 58%] 330s metadata/tests/test_missing.py ................ [ 59%] 330s metadata/tests/test_mixin.py ........................................... [ 60%] 330s ....................................................... [ 62%] 330s sequence/tests/test_alphabet.py ..... [ 62%] 330s sequence/tests/test_distance.py .......................... [ 63%] 330s sequence/tests/test_dna.py ... [ 63%] 330s sequence/tests/test_genetic_code.py .......................... [ 64%] 330s sequence/tests/test_grammared_sequence.py .............................. [ 65%] 330s ................... [ 66%] 330s sequence/tests/test_nucleotide_sequences.py ............................ [ 67%] 330s . [ 67%] 330s sequence/tests/test_protein.py ........... [ 67%] 330s sequence/tests/test_rna.py ... [ 68%] 330s sequence/tests/test_sequence.py ........................................ [ 69%] 330s ........................................................................ [ 72%] 331s ........................................................................ [ 74%] 331s ........................................................................ [ 77%] 331s ....... [ 77%] 331s sequence/tests/test_substitution.py ........ [ 77%] 331s stats/distance/tests/test_anosim.py .... [ 77%] 331s stats/distance/tests/test_base.py ...................................... [ 79%] 331s .......................................................... [ 81%] 354s stats/distance/tests/test_bioenv.py ................. [ 81%] 360s stats/distance/tests/test_mantel.py .................................... [ 83%] 360s ........ [ 83%] 362s stats/distance/tests/test_permanova.py ..... [ 83%] 382s stats/distance/tests/test_permdisp.py .............. [ 84%] 383s stats/evolve/tests/test_hommola.py ............ [ 84%] 383s stats/ordination/tests/test_canonical_correspondence_analysis.py ...... [ 84%] 383s stats/ordination/tests/test_correspondence_analysis.py ........ [ 85%] 383s stats/ordination/tests/test_ordination_results.py ............. [ 85%] 383s stats/ordination/tests/test_principal_coordinate_analysis.py ........... [ 86%] 384s . [ 86%] 384s stats/ordination/tests/test_redundancy_analysis.py .... [ 86%] 384s stats/ordination/tests/test_util.py .......... [ 86%] 385s stats/tests/test_composition.py ........................................ [ 87%] 410s .......................................... [ 89%] 410s stats/tests/test_gradient.py .......................... [ 90%] 410s stats/tests/test_misc.py ... [ 90%] 413s stats/tests/test_power.py ........................................... [ 92%] 415s stats/tests/test_subsample.py ............ [ 92%] 415s table/tests/test_base.py . [ 92%] 415s tests/test_base.py ..... [ 92%] 416s tests/test_workflow.py ................. [ 93%] 416s tree/tests/test_majority_rule.py ...... [ 93%] 417s tree/tests/test_nj.py ............................ [ 94%] 417s tree/tests/test_tree.py ................................................ [ 96%] 417s ........................................................ [ 98%] 417s util/tests/test_decorator.py ........ [ 98%] 417s util/tests/test_misc.py .................... [ 99%] 418s util/tests/test_plotting.py ...... [ 99%] 418s util/tests/test_testing.py ............... [100%] 418s 418s =============================== warnings summary =============================== 418s alignment/tests/test_pairwise.py::PairwiseAlignmentTests::test_compute_score_and_traceback_matrices 418s /usr/lib/python3/dist-packages/skbio/util/_warning.py:56: DeprecationWarning: make_identity_substitution_matrix is deprecated as of 0.4.0. It has been replaced by the SubstitutionMatrix class. Additional details at https://github.com/scikit-bio/scikit-bio/pull/1913. 418s warn( 418s 418s alignment/tests/test_ssw.py::TestAlignStripedSmithWaterman::test_invalid_type 418s /usr/lib/python3/dist-packages/skbio/util/_warning.py:56: DeprecationWarning: local_pairwise_align_ssw is deprecated as of 0.5.8. It will be removed in favor of more general purpose and performant aligners. Additional details at https://github.com/scikit-bio/scikit-bio/issues/1814. 418s warn( 418s 418s alignment/tests/test_tabular_msa.py::TestGapFrequencies::test_no_positions_relative 418s /usr/lib/python3/dist-packages/skbio/alignment/_tabular_msa.py:1648: RuntimeWarning: invalid value encountered in divide 418s gap_freqs /= length 418s 418s diversity/tests/test_block.py::ParallelBetaDiversity::test_block_beta_diversity 418s /usr/lib/python3/dist-packages/skbio/util/_warning.py:56: DeprecationWarning: partial_beta_diversity is deprecated as of 0.5.0. The return type is unstable. Developer caution is advised. The resulting DistanceMatrix object will include zeros when distance has not been calculated, and therefore can be misleading. 418s warn( 418s 418s metadata/tests/test_io.py: 10 warnings 418s /usr/lib/python3/dist-packages/skbio/metadata/io.py:411: FutureWarning: Downcasting behavior in `replace` is deprecated and will be removed in a future version. To retain the old behavior, explicitly call `result.infer_objects(copy=False)`. To opt-in to the future behavior, set `pd.set_option('future.no_silent_downcasting', True)` 418s series = series.replace("", np.nan) 418s 418s metadata/tests/test_io.py::TestSave::test_numeric_metadata_column_insdc_missing 418s metadata/tests/test_metadata_column.py::TestToSeries::test_encode_missing_true 418s metadata/tests/test_metadata_column.py::TestToDataframe::test_encode_missing_true 418s /usr/lib/python3/dist-packages/skbio/metadata/_metadata.py:1102: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise an error in a future version of pandas. Value '['missing']' has dtype incompatible with float64, please explicitly cast to a compatible dtype first. 418s series[missing.index] = missing 418s 418s metadata/tests/test_missing.py::TestISNDC::test_roundtrip_all_missing_object 418s metadata/tests/test_missing.py::TestOmitted::test_roundtrip_all_missing_object 418s /usr/lib/python3/dist-packages/skbio/metadata/tests/test_missing.py:53: FutureWarning: Mismatched null-like values nan and None found. In a future version, pandas equality-testing functions (e.g. assert_frame_equal) will consider these not-matching and raise. 418s pdt.assert_series_equal(missing, series.astype(object)) 418s 418s metadata/tests/test_missing.py::TestOmitted::test_roundtrip_bool 418s metadata/tests/test_missing.py::TestOmitted::test_roundtrip_string 418s /usr/lib/python3/dist-packages/skbio/metadata/tests/test_missing.py:31: FutureWarning: Mismatched null-like values nan and None found. In a future version, pandas equality-testing functions (e.g. assert_frame_equal) will consider these not-matching and raise. 418s pdt.assert_series_equal(missing, series[1:].astype(object)) 418s 418s sequence/tests/test_grammared_sequence.py::TestGrammaredSequence::test_has_nondegenerates 418s sequence/tests/test_grammared_sequence.py::TestGrammaredSequence::test_has_nondegenerates 418s sequence/tests/test_grammared_sequence.py::TestGrammaredSequence::test_has_nondegenerates 418s sequence/tests/test_grammared_sequence.py::TestGrammaredSequence::test_has_nondegenerates 418s sequence/tests/test_grammared_sequence.py::TestGrammaredSequence::test_has_nondegenerates 418s sequence/tests/test_grammared_sequence.py::TestGrammaredSequence::test_has_nondegenerates 418s /usr/lib/python3/dist-packages/skbio/sequence/_grammared_sequence.py:639: DeprecationWarning: has_nondegenerates is deprecated as of 0.5.0 418s warn("has_nondegenerates is deprecated as of 0.5.0", DeprecationWarning) 418s 418s sequence/tests/test_grammared_sequence.py::TestGrammaredSequence::test_nondegenerate_chars 418s sequence/tests/test_grammared_sequence.py::TestGrammaredSequence::test_nondegenerate_chars 418s sequence/tests/test_grammared_sequence.py::TestGrammaredSequence::test_nondegenerate_chars 418s sequence/tests/test_nucleotide_sequences.py::TestNucleotideSequence::test_nondegenerate_chars 418s sequence/tests/test_nucleotide_sequences.py::TestNucleotideSequence::test_nondegenerate_chars 418s sequence/tests/test_nucleotide_sequences.py::TestNucleotideSequence::test_nondegenerate_chars 418s sequence/tests/test_nucleotide_sequences.py::TestNucleotideSequence::test_nondegenerate_chars 418s sequence/tests/test_protein.py::TestProtein::test_nondegenerate_chars 418s sequence/tests/test_protein.py::TestProtein::test_nondegenerate_chars 418s /usr/lib/python3/dist-packages/skbio/sequence/_grammared_sequence.py:313: DeprecationWarning: nondegenerate_chars is deprecated as of 0.5.0 418s warn("nondegenerate_chars is deprecated as of 0.5.0", DeprecationWarning) 418s 418s sequence/tests/test_grammared_sequence.py::TestGrammaredSequence::test_nondegenerates 418s sequence/tests/test_grammared_sequence.py::TestGrammaredSequence::test_nondegenerates 418s sequence/tests/test_grammared_sequence.py::TestGrammaredSequence::test_nondegenerates 418s sequence/tests/test_grammared_sequence.py::TestGrammaredSequence::test_nondegenerates 418s sequence/tests/test_grammared_sequence.py::TestGrammaredSequence::test_nondegenerates 418s sequence/tests/test_grammared_sequence.py::TestGrammaredSequence::test_nondegenerates 418s sequence/tests/test_grammared_sequence.py::TestGrammaredSequence::test_nondegenerates 418s /usr/lib/python3/dist-packages/skbio/sequence/_grammared_sequence.py:572: DeprecationWarning: nondenengerates is deprecated as of 0.5.0. 418s warn("nondenengerates is deprecated as of 0.5.0.", DeprecationWarning) 418s 418s sequence/tests/test_sequence.py::TestSequence::test_frequencies_empty_sequence 418s /usr/lib/python3/dist-packages/skbio/sequence/_sequence.py:1824: RuntimeWarning: invalid value encountered in divide 418s obs_counts = obs_counts / len(self) 418s 418s stats/distance/tests/test_mantel.py::MantelTests::test_no_variation_pearson 418s /usr/lib/python3/dist-packages/skbio/stats/distance/_mantel.py:364: ConstantInputWarning: All values in data are exactly equal; results may not be reliable. 418s warnings.warn(ConstantInputWarning()) 418s 418s stats/distance/tests/test_mantel.py::MantelTests::test_no_variation_spearman 418s /usr/lib/python3/dist-packages/skbio/stats/distance/_mantel.py:483: ConstantInputWarning: All values in data are exactly equal; results may not be reliable. 418s warnings.warn(ConstantInputWarning()) 418s 418s stats/distance/tests/test_permdisp.py::testPERMDISP::test_call_via_series 418s stats/distance/tests/test_permdisp.py::testPERMDISP::test_call_via_series 418s /usr/lib/python3/dist-packages/skbio/stats/ordination/_principal_coordinate_analysis.py:146: RuntimeWarning: The result contains negative eigenvalues. Please compare their magnitude with the magnitude of some of the largest positive eigenvalues. If the negative ones are smaller, it's probably safe to ignore them, but if they are large in magnitude, the results won't be useful. See the Notes section for more details. The smallest eigenvalue is -0.006573677549550482 and the largest is 0.17668321589384078. 418s warn( 418s 418s stats/distance/tests/test_permdisp.py::testPERMDISP::test_centroids_eq_groups 418s stats/distance/tests/test_permdisp.py::testPERMDISP::test_no_permuations 418s /usr/lib/python3/dist-packages/skbio/stats/ordination/_principal_coordinate_analysis.py:146: RuntimeWarning: The result contains negative eigenvalues. Please compare their magnitude with the magnitude of some of the largest positive eigenvalues. If the negative ones are smaller, it's probably safe to ignore them, but if they are large in magnitude, the results won't be useful. See the Notes section for more details. The smallest eigenvalue is -13.541846544269617 and the largest is 16.587201374785895. 418s warn( 418s 418s stats/distance/tests/test_permdisp.py::testPERMDISP::test_centroids_mixedgroups 418s stats/distance/tests/test_permdisp.py::testPERMDISP::test_centroids_uneq_groups 418s /usr/lib/python3/dist-packages/skbio/stats/ordination/_principal_coordinate_analysis.py:146: RuntimeWarning: The result contains negative eigenvalues. Please compare their magnitude with the magnitude of some of the largest positive eigenvalues. If the negative ones are smaller, it's probably safe to ignore them, but if they are large in magnitude, the results won't be useful. See the Notes section for more details. The smallest eigenvalue is -15.629533932395201 and the largest is 20.903154277938906. 418s warn( 418s 418s stats/distance/tests/test_permdisp.py::testPERMDISP::test_centroids_null 418s /usr/lib/python3/dist-packages/skbio/stats/ordination/_principal_coordinate_analysis.py:190: RuntimeWarning: invalid value encountered in divide 418s proportion_explained = eigvals / sum_eigenvalues 418s 418s stats/distance/tests/test_permdisp.py::testPERMDISP::test_centroids_null 418s /usr/lib/python3/dist-packages/scipy/stats/_axis_nan_policy.py:605: ConstantInputWarning: Each of the input arrays is constant; the F statistic is not defined or infinite 418s res = hypotest_fun_out(*samples, axis=axis, **kwds) 418s 418s stats/distance/tests/test_permdisp.py::testPERMDISP::test_confirm_betadispr_results 418s stats/distance/tests/test_permdisp.py::testPERMDISP::test_confirm_betadispr_results 418s /usr/lib/python3/dist-packages/skbio/stats/ordination/_principal_coordinate_analysis.py:146: RuntimeWarning: The result contains negative eigenvalues. Please compare their magnitude with the magnitude of some of the largest positive eigenvalues. If the negative ones are smaller, it's probably safe to ignore them, but if they are large in magnitude, the results won't be useful. See the Notes section for more details. The smallest eigenvalue is -0.007758325147780548 and the largest is 2.7077929489469246. 418s warn( 418s 418s stats/ordination/tests/test_redundancy_analysis.py::TestRDAErrors::test_shape 418s /usr/lib/python3.12/unittest/case.py:690: DeprecationWarning: It is deprecated to return a value that is not None from a test case (>) 418s return self.run(*args, **kwds) 418s 418s stats/tests/test_composition.py::CompositionTests::test_multiplicative_replacement 418s /usr/lib/python3/dist-packages/skbio/util/_warning.py:60: UserWarning: multiplicative_replacement is deprecated as of 0.6.0. 418s warn(f"{func.__name__} is deprecated as of {ver}.") 418s 418s stats/tests/test_composition.py::AncomTests::test_ancom_alternative_test 418s /usr/lib/python3/dist-packages/scipy/stats/_axis_nan_policy.py:573: RuntimeWarning: Precision loss occurred in moment calculation due to catastrophic cancellation. This occurs when the data are nearly identical. Results may be unreliable. 418s res = hypotest_fun_out(*samples, **kwds) 418s 418s stats/tests/test_composition.py::AncomTests::test_ancom_multiple_comparisons_deprecated 418s /usr/lib/python3/dist-packages/skbio/util/_warning.py:60: UserWarning: ancom is deprecated as of 0.6.0. 418s warn(f"{func.__name__} is deprecated as of {ver}.") 418s 418s stats/tests/test_composition.py::AncomTests::test_ancom_no_signal 418s /usr/lib/python3/dist-packages/scipy/stats/_axis_nan_policy.py:573: ConstantInputWarning: Each of the input arrays is constant; the F statistic is not defined or infinite 418s res = hypotest_fun_out(*samples, **kwds) 418s 418s stats/tests/test_composition.py::VLRTests::test_pairwise_vlr 418s /usr/lib/python3/dist-packages/skbio/stats/composition.py:947: RuntimeWarning: divide by zero encountered in log 418s X_log = np.log(mat) 418s 418s stats/tests/test_composition.py::VLRTests::test_pairwise_vlr 418s /usr/lib/python3/dist-packages/numpy/lib/function_base.py:2742: RuntimeWarning: invalid value encountered in subtract 418s X -= avg[:, None] 418s 418s stats/tests/test_composition.py::VLRTests::test_vlr 418s /usr/lib/python3/dist-packages/skbio/stats/composition.py:831: RuntimeWarning: divide by zero encountered in log 418s x = np.log(x) 418s 418s stats/tests/test_composition.py::VLRTests::test_vlr 418s /usr/lib/python3/dist-packages/numpy/core/_methods.py:173: RuntimeWarning: invalid value encountered in subtract 418s x = asanyarray(arr - arrmean) 418s 418s stats/tests/test_gradient.py::GradientTests::test_weight_by_vector 418s /usr/lib/python3/dist-packages/skbio/stats/gradient.py:167: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise an error in a future version of pandas. Value '6.357142857142857' has dtype incompatible with int64, please explicitly cast to a compatible dtype first. 418s trajectories.loc[idx] = ( 418s 418s tree/tests/test_tree.py::TreeTests::test_root_at 418s /usr/lib/python3/dist-packages/skbio/tree/_tree.py:1327: FutureWarning: The default behavior of `root_at` is subject to change in 0.7.0. The new default behavior can be achieved by specifying `reset=True, branch_attrs=[], root_name=None`. 418s warn( 418s 418s tree/tests/test_tree.py::TreeTests::test_root_at 418s /usr/lib/python3/dist-packages/skbio/tree/_tree.py:776: FutureWarning: The default behavior of `unrooted_copy` is subject to change in 0.7.0. The new default behavior can be achieved by specifying `branch_attrs={"length", "support"}, root_name=None`. 418s warn( 418s 418s tree/tests/test_tree.py::TreeTests::test_root_at_midpoint 418s /usr/lib/python3/dist-packages/skbio/tree/_tree.py:1472: FutureWarning: The default behavior of `root_at_midpoint` is subject to change in 0.7.0. The new default behavior can be achieved by specifying `reset=True, branch_attrs=[], root_name=None`. 418s warn( 418s 418s tree/tests/test_tree.py::TreeTests::test_unrooted_deepcopy 418s /usr/lib/python3/dist-packages/skbio/util/_warning.py:56: DeprecationWarning: unrooted_deepcopy is deprecated as of 0.6.2. Use unrooted_copy instead. 418s warn( 418s 418s -- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html 418s ========== 2763 passed, 30 skipped, 70 warnings in 142.93s (0:02:22) =========== 419s I: pybuild base:311: cd /tmp/autopkgtest.HUtTKH/autopkgtest_tmp/build; python3.13 -m pytest --pyargs skbio 424s ============================= test session starts ============================== 424s platform linux -- Python 3.13.2, pytest-8.3.4, pluggy-1.5.0 424s rootdir: /tmp/autopkgtest.HUtTKH/autopkgtest_tmp/build 424s configfile: pyproject.toml 424s plugins: typeguard-4.4.1 424s collected 2793 items 424s 424s alignment/tests/test_pairwise.py ......................... [ 0%] 424s alignment/tests/test_path.py ................. [ 1%] 424s alignment/tests/test_ssw.py ........................... [ 2%] 425s alignment/tests/test_tabular_msa.py .................................... [ 3%] 425s ........................................................................ [ 6%] 427s ........................................................................ [ 8%] 429s ........................................................................ [ 11%] 429s ........................................................................ [ 14%] 429s ........................................................................ [ 16%] 429s ..... [ 16%] 429s diversity/alpha/tests/test_ace.py .. [ 16%] 433s diversity/alpha/tests/test_base.py ............................... [ 18%] 433s diversity/alpha/tests/test_chao1.py ... [ 18%] 433s diversity/alpha/tests/test_gini.py .... [ 18%] 439s diversity/alpha/tests/test_lladser.py ............ [ 18%] 440s diversity/alpha/tests/test_pd.py ................ [ 19%] 440s diversity/beta/tests/test_unifrac.py ............................ [ 20%] 440s diversity/tests/test_block.py ........... [ 20%] 440s diversity/tests/test_driver.py ..................................... [ 21%] 440s diversity/tests/test_util.py ................ [ 22%] 440s embedding/tests/test_embedding.py ................... [ 23%] 440s embedding/tests/test_protein.py .............. [ 23%] 440s io/format/tests/test_base.py ................................ [ 24%] 440s io/format/tests/test_binary_dm.py ......... [ 25%] 440s io/format/tests/test_biom.py ... [ 25%] 440s io/format/tests/test_blast6.py ........... [ 25%] 441s io/format/tests/test_blast7.py .............. [ 26%] 441s io/format/tests/test_clustal.py ............. [ 26%] 441s io/format/tests/test_embed.py ........ [ 26%] 443s io/format/tests/test_embl.py ............................... [ 28%] 443s io/format/tests/test_emptyfile.py .. [ 28%] 448s io/format/tests/test_fasta.py ................ [ 28%] 453s io/format/tests/test_fastq.py ............... [ 29%] 454s io/format/tests/test_genbank.py ..................... [ 30%] 454s io/format/tests/test_gff3.py ........................ [ 30%] 454s io/format/tests/test_lsmat.py ....... [ 31%] 454s io/format/tests/test_newick.py ....... [ 31%] 455s io/format/tests/test_ordination.py ..... [ 31%] 456s io/format/tests/test_phylip.py ....... [ 31%] 456s io/format/tests/test_qseq.py ...... [ 32%] 457s io/format/tests/test_sample_metadata.py .... [ 32%] 457s io/format/tests/test_sequence_feature_vocabulary.py .... [ 32%] 457s io/format/tests/test_stockholm.py ...................................... [ 33%] 458s ..................................... [ 34%] 458s io/format/tests/test_taxdump.py ...... [ 35%] 458s io/tests/test_iosources.py .......... [ 35%] 458s io/tests/test_registry.py .............................................. [ 37%] 458s ................................................ [ 38%] 460s io/tests/test_util.py .........................................sssssssss [ 40%] 463s sssssssssssssssssssss................................................... [ 43%] 467s ........................................................................ [ 45%] 469s .......................... [ 46%] 469s metadata/tests/test_enan.py ... [ 46%] 470s metadata/tests/test_intersection.py ............... [ 47%] 470s metadata/tests/test_interval.py ........................................ [ 48%] 470s ............................... [ 49%] 471s metadata/tests/test_io.py .............................................. [ 51%] 472s ............................................................ [ 53%] 472s metadata/tests/test_metadata.py ........................................ [ 55%] 472s .................... [ 55%] 472s metadata/tests/test_metadata_column.py ................................. [ 57%] 472s ........................................ [ 58%] 472s metadata/tests/test_missing.py ................ [ 59%] 472s metadata/tests/test_mixin.py ........................................... [ 60%] 472s ....................................................... [ 62%] 472s sequence/tests/test_alphabet.py ..... [ 62%] 472s sequence/tests/test_distance.py .......................... [ 63%] 472s sequence/tests/test_dna.py ... [ 63%] 473s sequence/tests/test_genetic_code.py .......................... [ 64%] 473s sequence/tests/test_grammared_sequence.py .............................. [ 65%] 473s ................... [ 66%] 473s sequence/tests/test_nucleotide_sequences.py ............................ [ 67%] 473s . [ 67%] 473s sequence/tests/test_protein.py ........... [ 67%] 473s sequence/tests/test_rna.py ... [ 68%] 473s sequence/tests/test_sequence.py ........................................ [ 69%] 473s ........................................................................ [ 72%] 473s ........................................................................ [ 74%] 473s ........................................................................ [ 77%] 473s ....... [ 77%] 473s sequence/tests/test_substitution.py ........ [ 77%] 473s stats/distance/tests/test_anosim.py .... [ 77%] 474s stats/distance/tests/test_base.py ...................................... [ 79%] 474s .......................................................... [ 81%] 493s stats/distance/tests/test_bioenv.py ................. [ 81%] 499s stats/distance/tests/test_mantel.py .................................... [ 83%] 499s ........ [ 83%] 500s stats/distance/tests/test_permanova.py ..... [ 83%] 516s stats/distance/tests/test_permdisp.py .............. [ 84%] 516s stats/evolve/tests/test_hommola.py ............ [ 84%] 517s stats/ordination/tests/test_canonical_correspondence_analysis.py ...... [ 84%] 517s stats/ordination/tests/test_correspondence_analysis.py ........ [ 85%] 517s stats/ordination/tests/test_ordination_results.py ............. [ 85%] 517s stats/ordination/tests/test_principal_coordinate_analysis.py ........... [ 86%] 517s . [ 86%] 517s stats/ordination/tests/test_redundancy_analysis.py .... [ 86%] 517s stats/ordination/tests/test_util.py .......... [ 86%] 518s stats/tests/test_composition.py ........................................ [ 87%] 539s .......................................... [ 89%] 540s stats/tests/test_gradient.py .......................... [ 90%] 540s stats/tests/test_misc.py ... [ 90%] 543s stats/tests/test_power.py ........................................... [ 92%] 545s stats/tests/test_subsample.py ............ [ 92%] 545s table/tests/test_base.py . [ 92%] 545s tests/test_base.py ..... [ 92%] 545s tests/test_workflow.py ................. [ 93%] 545s tree/tests/test_majority_rule.py ...... [ 93%] 546s tree/tests/test_nj.py ............................ [ 94%] 546s tree/tests/test_tree.py ................................................ [ 96%] 546s ........................................................ [ 98%] 546s util/tests/test_decorator.py ........ [ 98%] 546s util/tests/test_misc.py .................... [ 99%] 547s util/tests/test_plotting.py ...... [ 99%] 547s util/tests/test_testing.py ............... [100%] 547s 547s =============================== warnings summary =============================== 547s alignment/tests/test_pairwise.py::PairwiseAlignmentTests::test_compute_score_and_traceback_matrices 547s /usr/lib/python3/dist-packages/skbio/util/_warning.py:56: DeprecationWarning: make_identity_substitution_matrix is deprecated as of 0.4.0. It has been replaced by the SubstitutionMatrix class. Additional details at https://github.com/scikit-bio/scikit-bio/pull/1913. 547s warn( 547s 547s alignment/tests/test_ssw.py::TestAlignStripedSmithWaterman::test_invalid_type 547s /usr/lib/python3/dist-packages/skbio/util/_warning.py:56: DeprecationWarning: local_pairwise_align_ssw is deprecated as of 0.5.8. It will be removed in favor of more general purpose and performant aligners. Additional details at https://github.com/scikit-bio/scikit-bio/issues/1814. 547s warn( 547s 547s alignment/tests/test_tabular_msa.py::TestGapFrequencies::test_no_positions_relative 547s /usr/lib/python3/dist-packages/skbio/alignment/_tabular_msa.py:1648: RuntimeWarning: invalid value encountered in divide 547s gap_freqs /= length 547s 547s diversity/tests/test_block.py::ParallelBetaDiversity::test_block_beta_diversity 547s /usr/lib/python3/dist-packages/skbio/util/_warning.py:56: DeprecationWarning: partial_beta_diversity is deprecated as of 0.5.0. The return type is unstable. Developer caution is advised. The resulting DistanceMatrix object will include zeros when distance has not been calculated, and therefore can be misleading. 547s warn( 547s 547s metadata/tests/test_io.py: 10 warnings 547s /usr/lib/python3/dist-packages/skbio/metadata/io.py:411: FutureWarning: Downcasting behavior in `replace` is deprecated and will be removed in a future version. To retain the old behavior, explicitly call `result.infer_objects(copy=False)`. To opt-in to the future behavior, set `pd.set_option('future.no_silent_downcasting', True)` 547s series = series.replace("", np.nan) 547s 547s metadata/tests/test_io.py::TestSave::test_numeric_metadata_column_insdc_missing 547s metadata/tests/test_metadata_column.py::TestToSeries::test_encode_missing_true 547s metadata/tests/test_metadata_column.py::TestToDataframe::test_encode_missing_true 547s /usr/lib/python3/dist-packages/skbio/metadata/_metadata.py:1102: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise an error in a future version of pandas. Value '['missing']' has dtype incompatible with float64, please explicitly cast to a compatible dtype first. 547s series[missing.index] = missing 547s 547s metadata/tests/test_missing.py::TestISNDC::test_roundtrip_all_missing_object 547s metadata/tests/test_missing.py::TestOmitted::test_roundtrip_all_missing_object 547s /usr/lib/python3/dist-packages/skbio/metadata/tests/test_missing.py:53: FutureWarning: Mismatched null-like values nan and None found. In a future version, pandas equality-testing functions (e.g. assert_frame_equal) will consider these not-matching and raise. 547s pdt.assert_series_equal(missing, series.astype(object)) 547s 547s metadata/tests/test_missing.py::TestOmitted::test_roundtrip_bool 547s metadata/tests/test_missing.py::TestOmitted::test_roundtrip_string 547s /usr/lib/python3/dist-packages/skbio/metadata/tests/test_missing.py:31: FutureWarning: Mismatched null-like values nan and None found. In a future version, pandas equality-testing functions (e.g. assert_frame_equal) will consider these not-matching and raise. 547s pdt.assert_series_equal(missing, series[1:].astype(object)) 547s 547s sequence/tests/test_grammared_sequence.py::TestGrammaredSequence::test_has_nondegenerates 547s sequence/tests/test_grammared_sequence.py::TestGrammaredSequence::test_has_nondegenerates 547s sequence/tests/test_grammared_sequence.py::TestGrammaredSequence::test_has_nondegenerates 547s sequence/tests/test_grammared_sequence.py::TestGrammaredSequence::test_has_nondegenerates 547s sequence/tests/test_grammared_sequence.py::TestGrammaredSequence::test_has_nondegenerates 547s sequence/tests/test_grammared_sequence.py::TestGrammaredSequence::test_has_nondegenerates 547s /usr/lib/python3/dist-packages/skbio/sequence/_grammared_sequence.py:639: DeprecationWarning: has_nondegenerates is deprecated as of 0.5.0 547s warn("has_nondegenerates is deprecated as of 0.5.0", DeprecationWarning) 547s 547s sequence/tests/test_grammared_sequence.py::TestGrammaredSequence::test_nondegenerate_chars 547s sequence/tests/test_grammared_sequence.py::TestGrammaredSequence::test_nondegenerate_chars 547s sequence/tests/test_grammared_sequence.py::TestGrammaredSequence::test_nondegenerate_chars 547s sequence/tests/test_nucleotide_sequences.py::TestNucleotideSequence::test_nondegenerate_chars 547s sequence/tests/test_nucleotide_sequences.py::TestNucleotideSequence::test_nondegenerate_chars 547s sequence/tests/test_nucleotide_sequences.py::TestNucleotideSequence::test_nondegenerate_chars 547s sequence/tests/test_nucleotide_sequences.py::TestNucleotideSequence::test_nondegenerate_chars 547s sequence/tests/test_protein.py::TestProtein::test_nondegenerate_chars 547s sequence/tests/test_protein.py::TestProtein::test_nondegenerate_chars 547s /usr/lib/python3/dist-packages/skbio/sequence/_grammared_sequence.py:313: DeprecationWarning: nondegenerate_chars is deprecated as of 0.5.0 547s warn("nondegenerate_chars is deprecated as of 0.5.0", DeprecationWarning) 547s 547s sequence/tests/test_grammared_sequence.py::TestGrammaredSequence::test_nondegenerates 547s sequence/tests/test_grammared_sequence.py::TestGrammaredSequence::test_nondegenerates 547s sequence/tests/test_grammared_sequence.py::TestGrammaredSequence::test_nondegenerates 547s sequence/tests/test_grammared_sequence.py::TestGrammaredSequence::test_nondegenerates 547s sequence/tests/test_grammared_sequence.py::TestGrammaredSequence::test_nondegenerates 547s sequence/tests/test_grammared_sequence.py::TestGrammaredSequence::test_nondegenerates 547s sequence/tests/test_grammared_sequence.py::TestGrammaredSequence::test_nondegenerates 547s /usr/lib/python3/dist-packages/skbio/sequence/_grammared_sequence.py:572: DeprecationWarning: nondenengerates is deprecated as of 0.5.0. 547s warn("nondenengerates is deprecated as of 0.5.0.", DeprecationWarning) 547s 547s sequence/tests/test_sequence.py::TestSequence::test_frequencies_empty_sequence 547s /usr/lib/python3/dist-packages/skbio/sequence/_sequence.py:1824: RuntimeWarning: invalid value encountered in divide 547s obs_counts = obs_counts / len(self) 547s 547s stats/distance/tests/test_mantel.py::MantelTests::test_no_variation_pearson 547s /usr/lib/python3/dist-packages/skbio/stats/distance/_mantel.py:364: ConstantInputWarning: All values in data are exactly equal; results may not be reliable. 547s warnings.warn(ConstantInputWarning()) 547s 547s stats/distance/tests/test_mantel.py::MantelTests::test_no_variation_spearman 547s /usr/lib/python3/dist-packages/skbio/stats/distance/_mantel.py:483: ConstantInputWarning: All values in data are exactly equal; results may not be reliable. 547s warnings.warn(ConstantInputWarning()) 547s 547s stats/distance/tests/test_permdisp.py::testPERMDISP::test_call_via_series 547s stats/distance/tests/test_permdisp.py::testPERMDISP::test_call_via_series 547s /usr/lib/python3/dist-packages/skbio/stats/ordination/_principal_coordinate_analysis.py:146: RuntimeWarning: The result contains negative eigenvalues. Please compare their magnitude with the magnitude of some of the largest positive eigenvalues. If the negative ones are smaller, it's probably safe to ignore them, but if they are large in magnitude, the results won't be useful. See the Notes section for more details. The smallest eigenvalue is -0.006573677549550482 and the largest is 0.17668321589384078. 547s warn( 547s 547s stats/distance/tests/test_permdisp.py::testPERMDISP::test_centroids_eq_groups 547s stats/distance/tests/test_permdisp.py::testPERMDISP::test_no_permuations 547s /usr/lib/python3/dist-packages/skbio/stats/ordination/_principal_coordinate_analysis.py:146: RuntimeWarning: The result contains negative eigenvalues. Please compare their magnitude with the magnitude of some of the largest positive eigenvalues. If the negative ones are smaller, it's probably safe to ignore them, but if they are large in magnitude, the results won't be useful. See the Notes section for more details. The smallest eigenvalue is -13.541846544269617 and the largest is 16.587201374785895. 547s warn( 547s 547s stats/distance/tests/test_permdisp.py::testPERMDISP::test_centroids_mixedgroups 547s stats/distance/tests/test_permdisp.py::testPERMDISP::test_centroids_uneq_groups 547s /usr/lib/python3/dist-packages/skbio/stats/ordination/_principal_coordinate_analysis.py:146: RuntimeWarning: The result contains negative eigenvalues. Please compare their magnitude with the magnitude of some of the largest positive eigenvalues. If the negative ones are smaller, it's probably safe to ignore them, but if they are large in magnitude, the results won't be useful. See the Notes section for more details. The smallest eigenvalue is -15.629533932395201 and the largest is 20.903154277938906. 547s warn( 547s 547s stats/distance/tests/test_permdisp.py::testPERMDISP::test_centroids_null 547s /usr/lib/python3/dist-packages/skbio/stats/ordination/_principal_coordinate_analysis.py:190: RuntimeWarning: invalid value encountered in divide 547s proportion_explained = eigvals / sum_eigenvalues 547s 547s stats/distance/tests/test_permdisp.py::testPERMDISP::test_centroids_null 547s /usr/lib/python3/dist-packages/scipy/stats/_axis_nan_policy.py:605: ConstantInputWarning: Each of the input arrays is constant; the F statistic is not defined or infinite 547s res = hypotest_fun_out(*samples, axis=axis, **kwds) 547s 547s stats/distance/tests/test_permdisp.py::testPERMDISP::test_confirm_betadispr_results 547s stats/distance/tests/test_permdisp.py::testPERMDISP::test_confirm_betadispr_results 547s /usr/lib/python3/dist-packages/skbio/stats/ordination/_principal_coordinate_analysis.py:146: RuntimeWarning: The result contains negative eigenvalues. Please compare their magnitude with the magnitude of some of the largest positive eigenvalues. If the negative ones are smaller, it's probably safe to ignore them, but if they are large in magnitude, the results won't be useful. See the Notes section for more details. The smallest eigenvalue is -0.007758325147780548 and the largest is 2.7077929489469246. 547s warn( 547s 547s stats/ordination/tests/test_redundancy_analysis.py::TestRDAErrors::test_shape 547s /usr/lib/python3.13/unittest/case.py:707: DeprecationWarning: It is deprecated to return a value that is not None from a test case (>) 547s return self.run(*args, **kwds) 547s 547s stats/tests/test_composition.py::CompositionTests::test_multiplicative_replacement 547s /usr/lib/python3/dist-packages/skbio/util/_warning.py:60: UserWarning: multiplicative_replacement is deprecated as of 0.6.0. 547s warn(f"{func.__name__} is deprecated as of {ver}.") 547s 547s stats/tests/test_composition.py::AncomTests::test_ancom_alternative_test 547s /usr/lib/python3/dist-packages/scipy/stats/_axis_nan_policy.py:573: RuntimeWarning: Precision loss occurred in moment calculation due to catastrophic cancellation. This occurs when the data are nearly identical. Results may be unreliable. 547s res = hypotest_fun_out(*samples, **kwds) 547s 547s stats/tests/test_composition.py::AncomTests::test_ancom_multiple_comparisons_deprecated 547s /usr/lib/python3/dist-packages/skbio/util/_warning.py:60: UserWarning: ancom is deprecated as of 0.6.0. 547s warn(f"{func.__name__} is deprecated as of {ver}.") 547s 547s stats/tests/test_composition.py::AncomTests::test_ancom_no_signal 547s /usr/lib/python3/dist-packages/scipy/stats/_axis_nan_policy.py:573: ConstantInputWarning: Each of the input arrays is constant; the F statistic is not defined or infinite 547s res = hypotest_fun_out(*samples, **kwds) 547s 547s stats/tests/test_composition.py::VLRTests::test_pairwise_vlr 547s /usr/lib/python3/dist-packages/skbio/stats/composition.py:947: RuntimeWarning: divide by zero encountered in log 547s X_log = np.log(mat) 547s 547s stats/tests/test_composition.py::VLRTests::test_pairwise_vlr 547s /usr/lib/python3/dist-packages/numpy/lib/function_base.py:2742: RuntimeWarning: invalid value encountered in subtract 547s X -= avg[:, None] 547s 547s stats/tests/test_composition.py::VLRTests::test_vlr 547s /usr/lib/python3/dist-packages/skbio/stats/composition.py:831: RuntimeWarning: divide by zero encountered in log 547s x = np.log(x) 547s 547s stats/tests/test_composition.py::VLRTests::test_vlr 547s /usr/lib/python3/dist-packages/numpy/core/_methods.py:173: RuntimeWarning: invalid value encountered in subtract 547s x = asanyarray(arr - arrmean) 547s 547s stats/tests/test_gradient.py::GradientTests::test_weight_by_vector 547s /usr/lib/python3/dist-packages/skbio/stats/gradient.py:167: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise an error in a future version of pandas. Value '6.357142857142857' has dtype incompatible with int64, please explicitly cast to a compatible dtype first. 547s trajectories.loc[idx] = ( 547s 547s tree/tests/test_tree.py::TreeTests::test_root_at 547s /usr/lib/python3/dist-packages/skbio/tree/_tree.py:1327: FutureWarning: The default behavior of `root_at` is subject to change in 0.7.0. The new default behavior can be achieved by specifying `reset=True, branch_attrs=[], root_name=None`. 547s warn( 547s 547s tree/tests/test_tree.py::TreeTests::test_root_at 547s /usr/lib/python3/dist-packages/skbio/tree/_tree.py:776: FutureWarning: The default behavior of `unrooted_copy` is subject to change in 0.7.0. The new default behavior can be achieved by specifying `branch_attrs={"length", "support"}, root_name=None`. 547s warn( 547s 547s tree/tests/test_tree.py::TreeTests::test_root_at_midpoint 547s /usr/lib/python3/dist-packages/skbio/tree/_tree.py:1472: FutureWarning: The default behavior of `root_at_midpoint` is subject to change in 0.7.0. The new default behavior can be achieved by specifying `reset=True, branch_attrs=[], root_name=None`. 547s warn( 547s 547s tree/tests/test_tree.py::TreeTests::test_unrooted_deepcopy 547s /usr/lib/python3/dist-packages/skbio/util/_warning.py:56: DeprecationWarning: unrooted_deepcopy is deprecated as of 0.6.2. Use unrooted_copy instead. 547s warn( 547s 547s -- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html 547s ========== 2763 passed, 30 skipped, 70 warnings in 125.99s (0:02:05) =========== 548s autopkgtest [22:20:37]: test pybuild-autopkgtest: -----------------------] 549s pybuild-autopkgtest PASS 549s autopkgtest [22:20:38]: test pybuild-autopkgtest: - - - - - - - - - - results - - - - - - - - - - 549s autopkgtest [22:20:38]: @@@@@@@@@@@@@@@@@@@@ summary 549s pybuild-autopkgtest PASS 566s nova [W] Using flock in prodstack6-ppc64el 566s Creating nova instance adt-plucky-ppc64el-python-skbio-20250219-221128-juju-7f2275-prod-proposed-migration-environment-15-80d5e3e4-ff31-48fc-83ca-6311206f2987 from image adt/ubuntu-plucky-ppc64el-server-20250219.img (UUID 54e7bc81-8a85-40fa-b450-97b95b386f53)... 566s nova [W] Timed out waiting for fdbaf07c-7590-43d8-84ea-0f530c527f1c to get deleted.