0s autopkgtest [18:23:31]: starting date and time: 2024-11-18 18:23:31+0000 0s autopkgtest [18:23:31]: git checkout: 6f3be7a8 Fix armhf LXD image generation for plucky 0s autopkgtest [18:23:31]: host juju-7f2275-prod-proposed-migration-environment-15; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.2to9k83w/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:h5py,src:openmpi,src:sphinx-rtd-theme --apt-upgrade python-skbio --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 '--env=ADT_TEST_TRIGGERS=h5py/3.11.0-8ubuntu1 openmpi/5.0.5-6 sphinx-rtd-theme/3.0.2+dfsg-1' -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest-ppc64el --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-15@bos03-ppc64el-29.secgroup --name adt-plucky-ppc64el-python-skbio-20241118-182331-juju-7f2275-prod-proposed-migration-environment-15-aa2dfd9b-2857-48c7-812e-6234bef3aefd --image adt/ubuntu-plucky-ppc64el-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-15 --net-id=net_prod-proposed-migration-ppc64el -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,keyserver.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/ 77s autopkgtest [18:24:48]: testbed dpkg architecture: ppc64el 77s autopkgtest [18:24:48]: testbed apt version: 2.9.8 77s autopkgtest [18:24:48]: @@@@@@@@@@@@@@@@@@@@ test bed setup 78s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease [73.9 kB] 78s Get:2 http://ftpmaster.internal/ubuntu plucky-proposed/main Sources [72.2 kB] 78s Get:3 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse Sources [13.5 kB] 78s Get:4 http://ftpmaster.internal/ubuntu plucky-proposed/restricted Sources [7016 B] 78s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/universe Sources [815 kB] 79s Get:6 http://ftpmaster.internal/ubuntu plucky-proposed/main ppc64el Packages [87.5 kB] 79s Get:7 http://ftpmaster.internal/ubuntu plucky-proposed/universe ppc64el Packages [616 kB] 80s Get:8 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse ppc64el Packages [6788 B] 80s Fetched 1692 kB in 3s (662 kB/s) 80s Reading package lists... 82s Reading package lists... 83s Building dependency tree... 83s Reading state information... 83s Calculating upgrade... 83s The following NEW packages will be installed: 83s liblsof0 83s The following packages will be upgraded: 83s linux-firmware lsof 83s 2 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. 83s Need to get 538 MB of archives. 83s After this operation, 1614 kB of additional disk space will be used. 83s Get:1 http://ftpmaster.internal/ubuntu plucky/main ppc64el liblsof0 ppc64el 4.99.3+dfsg-2 [68.1 kB] 83s Get:2 http://ftpmaster.internal/ubuntu plucky/main ppc64el lsof ppc64el 4.99.3+dfsg-2 [255 kB] 83s Get:3 http://ftpmaster.internal/ubuntu plucky/main ppc64el linux-firmware ppc64el 20241118.git6e4e94b0-0ubuntu1 [537 MB] 101s Fetched 538 MB in 17s (30.9 MB/s) 101s Selecting previously unselected package liblsof0. 101s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 73817 files and directories currently installed.) 101s Preparing to unpack .../liblsof0_4.99.3+dfsg-2_ppc64el.deb ... 101s Unpacking liblsof0 (4.99.3+dfsg-2) ... 101s Preparing to unpack .../lsof_4.99.3+dfsg-2_ppc64el.deb ... 101s Unpacking lsof (4.99.3+dfsg-2) over (4.95.0-1.1) ... 101s Preparing to unpack .../linux-firmware_20241118.git6e4e94b0-0ubuntu1_ppc64el.deb ... 101s Unpacking linux-firmware (20241118.git6e4e94b0-0ubuntu1) over (20241108.git3bbb13a7-0ubuntu1) ... 104s Setting up linux-firmware (20241118.git6e4e94b0-0ubuntu1) ... 104s Setting up liblsof0 (4.99.3+dfsg-2) ... 104s Setting up lsof (4.99.3+dfsg-2) ... 104s Processing triggers for man-db (2.13.0-1) ... 104s Processing triggers for libc-bin (2.40-1ubuntu3) ... 104s Processing triggers for initramfs-tools (0.142ubuntu35) ... 104s update-initramfs: Generating /boot/initrd.img-6.11.0-8-generic 104s W: No lz4 in /usr/bin:/sbin:/bin, using gzip 111s Reading package lists... 111s Building dependency tree... 111s Reading state information... 112s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 112s Hit:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease 112s Hit:2 http://ftpmaster.internal/ubuntu plucky InRelease 112s Hit:3 http://ftpmaster.internal/ubuntu plucky-updates InRelease 112s Hit:4 http://ftpmaster.internal/ubuntu plucky-security InRelease 113s Reading package lists... 113s Reading package lists... 113s Building dependency tree... 113s Reading state information... 113s Calculating upgrade... 113s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 113s Reading package lists... 114s Building dependency tree... 114s Reading state information... 114s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 114s autopkgtest [18:25:25]: rebooting testbed after setup commands that affected boot 144s autopkgtest [18:25:55]: testbed running kernel: Linux 6.11.0-8-generic #8-Ubuntu SMP Mon Sep 16 13:49:23 UTC 2024 146s autopkgtest [18:25:57]: @@@@@@@@@@@@@@@@@@@@ apt-source python-skbio 149s Get:1 http://ftpmaster.internal/ubuntu plucky/universe python-skbio 0.6.2-3 (dsc) [2897 B] 149s Get:2 http://ftpmaster.internal/ubuntu plucky/universe python-skbio 0.6.2-3 (tar) [2204 kB] 149s Get:3 http://ftpmaster.internal/ubuntu plucky/universe python-skbio 0.6.2-3 (diff) [11.1 kB] 149s gpgv: Signature made Sat Sep 28 10:29:34 2024 UTC 149s gpgv: using RSA key 724D609337113C710550D7473C26763F6C67E6E2 149s gpgv: Can't check signature: No public key 149s dpkg-source: warning: cannot verify inline signature for ./python-skbio_0.6.2-3.dsc: no acceptable signature found 149s autopkgtest [18:26:00]: testing package python-skbio version 0.6.2-3 150s autopkgtest [18:26:01]: build not needed 150s autopkgtest [18:26:01]: test pybuild-autopkgtest: preparing testbed 152s Reading package lists... 152s Building dependency tree... 152s Reading state information... 152s Starting pkgProblemResolver with broken count: 0 152s Starting 2 pkgProblemResolver with broken count: 0 152s Done 153s The following additional packages will be installed: 153s architecture-properties autoconf automake autopoint autotools-dev blt 153s build-essential cpp cpp-14 cpp-14-powerpc64le-linux-gnu 153s cpp-powerpc64le-linux-gnu cython3 debhelper debugedit dh-autoreconf 153s dh-python dh-strip-nondeterminism docutils-common dwz fontconfig-config 153s fonts-dejavu-core fonts-dejavu-mono fonts-lyx fonts-mathjax fonts-open-sans 153s g++ g++-14 g++-14-powerpc64le-linux-gnu g++-powerpc64le-linux-gnu gcc gcc-14 153s gcc-14-powerpc64le-linux-gnu gcc-powerpc64le-linux-gnu gettext 153s intltool-debian libaec0 libarchive-zip-perl libasan8 libblas3 libcc1-0 153s libdebhelper-perl libdeflate0 libexpat1-dev libfile-stripnondeterminism-perl 153s libfontconfig1 libgcc-14-dev libgfortran5 libgomp1 libgraphite2-3 153s libharfbuzz0b libhdf5-103-1t64 libhdf5-hl-100t64 libimagequant0 libisl23 153s libitm1 libjbig0 libjpeg-turbo8 libjpeg8 libjs-jquery libjs-jquery-ui 153s libjs-mathjax libjs-sphinxdoc libjs-underscore libjson-perl liblapack3 153s liblbfgsb0 liblcms2-2 liblerc4 liblsan0 liblzf1 libmpc3 libopenjp2-7 153s libpython3-all-dev libpython3-dev libpython3.12-dev libqhull-r8.0 153s libquadmath0 libraqm0 libsharpyuv0 libsimde-dev libssw-dev libssw0 153s libstdc++-14-dev libsz2 libtcl8.6 libtiff6 libtk8.6 libtool libtsan2 153s libubsan1 libwebp7 libwebpdemux2 libwebpmux3 libxft2 libxrender1 libxslt1.1 153s libxss1 m4 po-debconf pybuild-plugin-autopkgtest python-biom-format-doc 153s python-matplotlib-data python-numpy-doc python-pandas-doc python-scipy-doc 153s python-skbio-doc python3-alabaster python3-all python3-all-dev 153s python3-appdirs python3-asttokens python3-biom-format python3-brotli 153s python3-bs4 python3-cachecontrol python3-click python3-colorama 153s python3-contourpy python3-cycler python3-dateutil python3-decorator 153s python3-defusedxml python3-dev python3-doc python3-docutils 153s python3-executing python3-fonttools python3-fs python3-h5py 153s python3-h5py-serial python3-hdmedians python3-imagesize python3-iniconfig 153s python3-ipython python3-jedi python3-joblib python3-kiwisolver python3-lxml 153s python3-lz4 python3-matplotlib python3-matplotlib-inline python3-mpmath 153s python3-msgpack python3-natsort python3-numpy python3-numpydoc 153s python3-packaging python3-pandas python3-pandas-lib python3-parso 153s python3-patsy python3-pexpect python3-pil python3-pil.imagetk python3-pluggy 153s python3-prompt-toolkit python3-ptyprocess python3-pure-eval 153s python3-pydata-sphinx-theme python3-pytest python3-roman python3-scipy 153s python3-six python3-skbio python3-sklearn python3-sklearn-lib 153s python3-snowballstemmer python3-soupsieve python3-sphinx 153s python3-sphinx-copybutton python3-sphinx-design python3-stack-data 153s python3-statsmodels python3-statsmodels-lib python3-sympy python3-tabulate 153s python3-threadpoolctl python3-tk python3-traitlets python3-typeshed 153s python3-tz python3-ufolib2 python3-wcwidth python3.12-dev python3.12-doc 153s python3.12-tk python3.13-tk sgml-base sphinx-common tk8.6-blt2.5 153s unicode-data x11-common xml-core zlib1g-dev 153s Suggested packages: 153s autoconf-archive gnu-standards autoconf-doc blt-demo cpp-doc gcc-14-locales 153s cpp-14-doc cython-doc dh-make flit python3-build python3-installer 153s python3-wheel gcc-14-doc gcc-multilib manpages-dev flex bison gdb gcc-doc 153s gdb-powerpc64le-linux-gnu gettext-doc libasprintf-dev libgettextpo-dev 153s libjs-jquery-ui-docs fonts-mathjax-extras fonts-stix libjs-mathjax-doc 153s liblcms2-utils libstdc++-14-doc tcl8.6 tk8.6 libtool-doc gfortran 153s | fortran95-compiler gcj-jdk m4-doc libmail-box-perl python-imageio-doc 153s python-pytest-doc python-skimage-doc python-cycler-doc python3-examples 153s docutils-doc fonts-linuxlibertine | ttf-linux-libertine texlive-lang-french 153s texlive-latex-base texlive-latex-recommended python-h5py-doc 153s python-ipython-doc python-joblib-doc python-lxml-doc cm-super-minimal dvipng 153s ffmpeg fonts-staypuft ghostscript gir1.2-gtk-3.0 inkscape ipython3 153s librsvg2-common python-matplotlib-doc python3-cairocffi python3-gi-cairo 153s python3-gobject python3-pyqt5 python3-sip python3-tornado 153s texlive-extra-utils texlive-latex-extra python-mpmath-doc python3-gmpy2 153s python-natsort-doc gfortran python-patsy-doc python-pexpect-doc 153s python-pil-doc python3-dap python-sklearn-doc python3-stemmer dvisvgm 153s fonts-freefont-otf imagemagick-6.q16 latexmk python3-sphinx-rtd-theme 153s sphinx-doc tex-gyre texlive-fonts-extra texlive-fonts-recommended 153s texlive-plain-generic python-sphinx-copybutton-doc python-statsmodels-doc 153s python-sympy-doc tix python3-tk-dbg python-traitlets-doc sgml-base-doc 153s Recommended packages: 153s libarchive-cpio-perl javascript-common libjson-xs-perl libltdl-dev 153s libmail-sendmail-perl libpaper-utils python3-simplejson python3-psutil 153s python3-cssselect python3-html5lib python3-bottleneck python3-numexpr 153s python3-odf python3-openpyxl python3-tables python3-olefile 153s python3-accessible-pygments python3-cvxopt isympy-common 153s The following NEW packages will be installed: 153s architecture-properties autoconf automake autopkgtest-satdep autopoint 153s autotools-dev blt build-essential cpp cpp-14 cpp-14-powerpc64le-linux-gnu 153s cpp-powerpc64le-linux-gnu cython3 debhelper debugedit dh-autoreconf 153s dh-python dh-strip-nondeterminism docutils-common dwz fontconfig-config 153s fonts-dejavu-core fonts-dejavu-mono fonts-lyx fonts-mathjax fonts-open-sans 153s g++ g++-14 g++-14-powerpc64le-linux-gnu g++-powerpc64le-linux-gnu gcc gcc-14 153s gcc-14-powerpc64le-linux-gnu gcc-powerpc64le-linux-gnu gettext 153s intltool-debian libaec0 libarchive-zip-perl libasan8 libblas3 libcc1-0 153s libdebhelper-perl libdeflate0 libexpat1-dev libfile-stripnondeterminism-perl 153s libfontconfig1 libgcc-14-dev libgfortran5 libgomp1 libgraphite2-3 153s libharfbuzz0b libhdf5-103-1t64 libhdf5-hl-100t64 libimagequant0 libisl23 153s libitm1 libjbig0 libjpeg-turbo8 libjpeg8 libjs-jquery libjs-jquery-ui 153s libjs-mathjax libjs-sphinxdoc libjs-underscore libjson-perl liblapack3 153s liblbfgsb0 liblcms2-2 liblerc4 liblsan0 liblzf1 libmpc3 libopenjp2-7 153s libpython3-all-dev libpython3-dev libpython3.12-dev libqhull-r8.0 153s libquadmath0 libraqm0 libsharpyuv0 libsimde-dev libssw-dev libssw0 153s libstdc++-14-dev libsz2 libtcl8.6 libtiff6 libtk8.6 libtool libtsan2 153s libubsan1 libwebp7 libwebpdemux2 libwebpmux3 libxft2 libxrender1 libxslt1.1 153s libxss1 m4 po-debconf pybuild-plugin-autopkgtest python-biom-format-doc 153s python-matplotlib-data python-numpy-doc python-pandas-doc python-scipy-doc 153s python-skbio-doc python3-alabaster python3-all python3-all-dev 153s python3-appdirs python3-asttokens python3-biom-format python3-brotli 153s python3-bs4 python3-cachecontrol python3-click python3-colorama 153s python3-contourpy python3-cycler python3-dateutil python3-decorator 153s python3-defusedxml python3-dev python3-doc python3-docutils 153s python3-executing python3-fonttools python3-fs python3-h5py 153s python3-h5py-serial python3-hdmedians python3-imagesize python3-iniconfig 153s python3-ipython python3-jedi python3-joblib python3-kiwisolver python3-lxml 153s python3-lz4 python3-matplotlib python3-matplotlib-inline python3-mpmath 153s python3-msgpack python3-natsort python3-numpy python3-numpydoc 153s python3-packaging python3-pandas python3-pandas-lib python3-parso 153s python3-patsy python3-pexpect python3-pil python3-pil.imagetk python3-pluggy 153s python3-prompt-toolkit python3-ptyprocess python3-pure-eval 153s python3-pydata-sphinx-theme python3-pytest python3-roman python3-scipy 153s python3-six python3-skbio python3-sklearn python3-sklearn-lib 153s python3-snowballstemmer python3-soupsieve python3-sphinx 153s python3-sphinx-copybutton python3-sphinx-design python3-stack-data 153s python3-statsmodels python3-statsmodels-lib python3-sympy python3-tabulate 153s python3-threadpoolctl python3-tk python3-traitlets python3-typeshed 153s python3-tz python3-ufolib2 python3-wcwidth python3.12-dev python3.12-doc 153s python3.12-tk python3.13-tk sgml-base sphinx-common tk8.6-blt2.5 153s unicode-data x11-common xml-core zlib1g-dev 153s 0 upgraded, 195 newly installed, 0 to remove and 0 not upgraded. 153s Need to get 213 MB/213 MB of archives. 153s After this operation, 1315 MB of additional disk space will be used. 153s Get:1 /tmp/autopkgtest.8U9zVy/1-autopkgtest-satdep.deb autopkgtest-satdep ppc64el 0 [988 B] 153s Get:2 http://ftpmaster.internal/ubuntu plucky/main ppc64el sgml-base all 1.31 [11.4 kB] 153s Get:3 http://ftpmaster.internal/ubuntu plucky/universe ppc64el architecture-properties ppc64el 0.2.3 [2064 B] 153s Get:4 http://ftpmaster.internal/ubuntu plucky/main ppc64el m4 ppc64el 1.4.19-4build1 [278 kB] 153s Get:5 http://ftpmaster.internal/ubuntu plucky/main ppc64el autoconf all 2.72-3 [382 kB] 153s Get:6 http://ftpmaster.internal/ubuntu plucky/main ppc64el autotools-dev all 20220109.1 [44.9 kB] 153s Get:7 http://ftpmaster.internal/ubuntu plucky/main ppc64el automake all 1:1.16.5-1.3ubuntu1 [558 kB] 153s Get:8 http://ftpmaster.internal/ubuntu plucky/main ppc64el autopoint all 0.22.5-2 [616 kB] 153s Get:9 http://ftpmaster.internal/ubuntu plucky/main ppc64el libtcl8.6 ppc64el 8.6.15+dfsg-2 [1201 kB] 153s Get:10 http://ftpmaster.internal/ubuntu plucky/main ppc64el fonts-dejavu-mono all 2.37-8 [502 kB] 153s Get:11 http://ftpmaster.internal/ubuntu plucky/main ppc64el fonts-dejavu-core all 2.37-8 [835 kB] 153s Get:12 http://ftpmaster.internal/ubuntu plucky/main ppc64el fontconfig-config ppc64el 2.15.0-1.1ubuntu2 [37.4 kB] 153s Get:13 http://ftpmaster.internal/ubuntu plucky/main ppc64el libfontconfig1 ppc64el 2.15.0-1.1ubuntu2 [190 kB] 153s Get:14 http://ftpmaster.internal/ubuntu plucky/main ppc64el libxrender1 ppc64el 1:0.9.10-1.1build1 [23.1 kB] 153s Get:15 http://ftpmaster.internal/ubuntu plucky/main ppc64el libxft2 ppc64el 2.3.6-1build1 [61.5 kB] 153s Get:16 http://ftpmaster.internal/ubuntu plucky/main ppc64el x11-common all 1:7.7+23ubuntu3 [21.7 kB] 153s Get:17 http://ftpmaster.internal/ubuntu plucky/main ppc64el libxss1 ppc64el 1:1.2.3-1build3 [7980 B] 153s Get:18 http://ftpmaster.internal/ubuntu plucky/main ppc64el libtk8.6 ppc64el 8.6.15-1 [942 kB] 153s Get:19 http://ftpmaster.internal/ubuntu plucky/main ppc64el tk8.6-blt2.5 ppc64el 2.5.3+dfsg-7build1 [784 kB] 153s Get:20 http://ftpmaster.internal/ubuntu plucky/main ppc64el blt ppc64el 2.5.3+dfsg-7build1 [4840 B] 153s Get:21 http://ftpmaster.internal/ubuntu plucky/main ppc64el libisl23 ppc64el 0.27-1 [882 kB] 153s Get:22 http://ftpmaster.internal/ubuntu plucky/main ppc64el libmpc3 ppc64el 1.3.1-1build2 [62.1 kB] 153s Get:23 http://ftpmaster.internal/ubuntu plucky/main ppc64el cpp-14-powerpc64le-linux-gnu ppc64el 14.2.0-8ubuntu1 [10.5 MB] 154s Get:24 http://ftpmaster.internal/ubuntu plucky/main ppc64el cpp-14 ppc64el 14.2.0-8ubuntu1 [1034 B] 154s Get:25 http://ftpmaster.internal/ubuntu plucky/main ppc64el cpp-powerpc64le-linux-gnu ppc64el 4:14.1.0-2ubuntu1 [5456 B] 154s Get:26 http://ftpmaster.internal/ubuntu plucky/main ppc64el cpp ppc64el 4:14.1.0-2ubuntu1 [22.5 kB] 154s Get:27 http://ftpmaster.internal/ubuntu plucky/main ppc64el libcc1-0 ppc64el 14.2.0-8ubuntu1 [48.1 kB] 154s Get:28 http://ftpmaster.internal/ubuntu plucky/main ppc64el libgomp1 ppc64el 14.2.0-8ubuntu1 [161 kB] 154s Get:29 http://ftpmaster.internal/ubuntu plucky/main ppc64el libitm1 ppc64el 14.2.0-8ubuntu1 [31.9 kB] 154s Get:30 http://ftpmaster.internal/ubuntu plucky/main ppc64el libasan8 ppc64el 14.2.0-8ubuntu1 [2945 kB] 154s Get:31 http://ftpmaster.internal/ubuntu plucky/main ppc64el liblsan0 ppc64el 14.2.0-8ubuntu1 [1322 kB] 154s Get:32 http://ftpmaster.internal/ubuntu plucky/main ppc64el libtsan2 ppc64el 14.2.0-8ubuntu1 [2695 kB] 154s Get:33 http://ftpmaster.internal/ubuntu plucky/main ppc64el libubsan1 ppc64el 14.2.0-8ubuntu1 [1191 kB] 154s Get:34 http://ftpmaster.internal/ubuntu plucky/main ppc64el libquadmath0 ppc64el 14.2.0-8ubuntu1 [158 kB] 154s Get:35 http://ftpmaster.internal/ubuntu plucky/main ppc64el libgcc-14-dev ppc64el 14.2.0-8ubuntu1 [1619 kB] 154s Get:36 http://ftpmaster.internal/ubuntu plucky/main ppc64el gcc-14-powerpc64le-linux-gnu ppc64el 14.2.0-8ubuntu1 [20.6 MB] 154s Get:37 http://ftpmaster.internal/ubuntu plucky/main ppc64el gcc-14 ppc64el 14.2.0-8ubuntu1 [528 kB] 154s Get:38 http://ftpmaster.internal/ubuntu plucky/main ppc64el gcc-powerpc64le-linux-gnu ppc64el 4:14.1.0-2ubuntu1 [1222 B] 154s Get:39 http://ftpmaster.internal/ubuntu plucky/main ppc64el gcc ppc64el 4:14.1.0-2ubuntu1 [5006 B] 154s Get:40 http://ftpmaster.internal/ubuntu plucky/main ppc64el libstdc++-14-dev ppc64el 14.2.0-8ubuntu1 [2673 kB] 154s Get:41 http://ftpmaster.internal/ubuntu plucky/main ppc64el g++-14-powerpc64le-linux-gnu ppc64el 14.2.0-8ubuntu1 [12.0 MB] 155s Get:42 http://ftpmaster.internal/ubuntu plucky/main ppc64el g++-14 ppc64el 14.2.0-8ubuntu1 [19.9 kB] 155s Get:43 http://ftpmaster.internal/ubuntu plucky/main ppc64el g++-powerpc64le-linux-gnu ppc64el 4:14.1.0-2ubuntu1 [968 B] 155s Get:44 http://ftpmaster.internal/ubuntu plucky/main ppc64el g++ ppc64el 4:14.1.0-2ubuntu1 [1090 B] 155s Get:45 http://ftpmaster.internal/ubuntu plucky/main ppc64el build-essential ppc64el 12.10ubuntu1 [4936 B] 155s Get:46 http://ftpmaster.internal/ubuntu plucky/universe ppc64el cython3 ppc64el 3.0.11+dfsg-1ubuntu2 [3263 kB] 155s Get:47 http://ftpmaster.internal/ubuntu plucky/main ppc64el libdebhelper-perl all 13.20ubuntu1 [94.2 kB] 155s Get:48 http://ftpmaster.internal/ubuntu plucky/main ppc64el libtool all 2.4.7-8 [166 kB] 155s Get:49 http://ftpmaster.internal/ubuntu plucky/main ppc64el dh-autoreconf all 20 [16.1 kB] 155s Get:50 http://ftpmaster.internal/ubuntu plucky/main ppc64el libarchive-zip-perl all 1.68-1 [90.2 kB] 155s Get:51 http://ftpmaster.internal/ubuntu plucky/main ppc64el libfile-stripnondeterminism-perl all 1.14.0-1 [20.1 kB] 155s Get:52 http://ftpmaster.internal/ubuntu plucky/main ppc64el dh-strip-nondeterminism all 1.14.0-1 [5058 B] 155s Get:53 http://ftpmaster.internal/ubuntu plucky/main ppc64el debugedit ppc64el 1:5.1-1 [52.1 kB] 155s Get:54 http://ftpmaster.internal/ubuntu plucky/main ppc64el dwz ppc64el 0.15-1build6 [142 kB] 155s Get:55 http://ftpmaster.internal/ubuntu plucky/main ppc64el gettext ppc64el 0.22.5-2 [1082 kB] 155s Get:56 http://ftpmaster.internal/ubuntu plucky/main ppc64el intltool-debian all 0.35.0+20060710.6 [23.2 kB] 155s Get:57 http://ftpmaster.internal/ubuntu plucky/main ppc64el po-debconf all 1.0.21+nmu1 [233 kB] 155s Get:58 http://ftpmaster.internal/ubuntu plucky/main ppc64el debhelper all 13.20ubuntu1 [893 kB] 155s Get:59 http://ftpmaster.internal/ubuntu plucky/universe ppc64el dh-python all 6.20241024 [112 kB] 155s Get:60 http://ftpmaster.internal/ubuntu plucky/main ppc64el xml-core all 0.19 [20.3 kB] 155s Get:61 http://ftpmaster.internal/ubuntu plucky/main ppc64el docutils-common all 0.21.2+dfsg-2 [131 kB] 155s Get:62 http://ftpmaster.internal/ubuntu plucky/universe ppc64el fonts-lyx all 2.4.2.1-1 [171 kB] 155s Get:63 http://ftpmaster.internal/ubuntu plucky/main ppc64el fonts-mathjax all 2.7.9+dfsg-1 [2208 kB] 155s Get:64 http://ftpmaster.internal/ubuntu plucky/universe ppc64el fonts-open-sans all 1.11-2 [635 kB] 155s Get:65 http://ftpmaster.internal/ubuntu plucky/universe ppc64el libaec0 ppc64el 1.1.3-1 [30.1 kB] 155s Get:66 http://ftpmaster.internal/ubuntu plucky/main ppc64el libblas3 ppc64el 3.12.0-3build2 [222 kB] 155s Get:67 http://ftpmaster.internal/ubuntu plucky/main ppc64el libdeflate0 ppc64el 1.22-1 [63.3 kB] 155s Get:68 http://ftpmaster.internal/ubuntu plucky/main ppc64el libexpat1-dev ppc64el 2.6.4-1 [149 kB] 155s Get:69 http://ftpmaster.internal/ubuntu plucky/main ppc64el libgfortran5 ppc64el 14.2.0-8ubuntu1 [571 kB] 155s Get:70 http://ftpmaster.internal/ubuntu plucky/main ppc64el libgraphite2-3 ppc64el 1.3.14-2ubuntu1 [84.6 kB] 155s Get:71 http://ftpmaster.internal/ubuntu plucky/main ppc64el libharfbuzz0b ppc64el 10.0.1-1 [596 kB] 155s Get:72 http://ftpmaster.internal/ubuntu plucky/universe ppc64el libsz2 ppc64el 1.1.3-1 [5566 B] 155s Get:73 http://ftpmaster.internal/ubuntu plucky/universe ppc64el libhdf5-103-1t64 ppc64el 1.10.10+repack-4ubuntu3 [1387 kB] 155s Get:74 http://ftpmaster.internal/ubuntu plucky/universe ppc64el libhdf5-hl-100t64 ppc64el 1.10.10+repack-4ubuntu3 [71.2 kB] 155s Get:75 http://ftpmaster.internal/ubuntu plucky/main ppc64el libimagequant0 ppc64el 2.18.0-1build1 [43.2 kB] 155s Get:76 http://ftpmaster.internal/ubuntu plucky/main ppc64el libjpeg-turbo8 ppc64el 2.1.5-2ubuntu2 [219 kB] 155s Get:77 http://ftpmaster.internal/ubuntu plucky/main ppc64el libjpeg8 ppc64el 8c-2ubuntu11 [2148 B] 155s Get:78 http://ftpmaster.internal/ubuntu plucky/main ppc64el libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [328 kB] 155s Get:79 http://ftpmaster.internal/ubuntu plucky/universe ppc64el libjs-jquery-ui all 1.13.2+dfsg-1 [252 kB] 155s Get:80 http://ftpmaster.internal/ubuntu plucky/main ppc64el libjs-underscore all 1.13.4~dfsg+~1.11.4-3 [118 kB] 155s Get:81 http://ftpmaster.internal/ubuntu plucky/main ppc64el libjs-sphinxdoc all 7.4.7-4 [158 kB] 155s Get:82 http://ftpmaster.internal/ubuntu plucky/main ppc64el libjson-perl all 4.10000-1 [81.9 kB] 155s Get:83 http://ftpmaster.internal/ubuntu plucky/main ppc64el liblapack3 ppc64el 3.12.0-3build2 [2806 kB] 155s Get:84 http://ftpmaster.internal/ubuntu plucky/universe ppc64el liblbfgsb0 ppc64el 3.0+dfsg.4-1build1 [33.0 kB] 155s Get:85 http://ftpmaster.internal/ubuntu plucky/main ppc64el liblcms2-2 ppc64el 2.16-2 [243 kB] 155s Get:86 http://ftpmaster.internal/ubuntu plucky/main ppc64el liblerc4 ppc64el 4.0.0+ds-4ubuntu2 [270 kB] 155s Get:87 http://ftpmaster.internal/ubuntu plucky/universe ppc64el liblzf1 ppc64el 3.6-4 [7920 B] 155s Get:88 http://ftpmaster.internal/ubuntu plucky/main ppc64el zlib1g-dev ppc64el 1:1.3.dfsg+really1.3.1-1ubuntu1 [902 kB] 155s Get:89 http://ftpmaster.internal/ubuntu plucky/main ppc64el libpython3.12-dev ppc64el 3.12.7-3 [6136 kB] 156s Get:90 http://ftpmaster.internal/ubuntu plucky/main ppc64el libpython3-dev ppc64el 3.12.6-0ubuntu1 [10.2 kB] 156s Get:91 http://ftpmaster.internal/ubuntu plucky/main ppc64el libpython3-all-dev ppc64el 3.12.6-0ubuntu1 [916 B] 156s Get:92 http://ftpmaster.internal/ubuntu plucky/universe ppc64el libqhull-r8.0 ppc64el 2020.2-6build1 [225 kB] 156s Get:93 http://ftpmaster.internal/ubuntu plucky/main ppc64el libraqm0 ppc64el 0.10.1-1build1 [19.4 kB] 156s Get:94 http://ftpmaster.internal/ubuntu plucky/main ppc64el libsharpyuv0 ppc64el 1.4.0-0.1 [22.0 kB] 156s Get:95 http://ftpmaster.internal/ubuntu plucky/universe ppc64el libsimde-dev all 0.8.2-1 [466 kB] 156s Get:96 http://ftpmaster.internal/ubuntu plucky/universe ppc64el libssw0 ppc64el 1.1-15 [24.2 kB] 156s Get:97 http://ftpmaster.internal/ubuntu plucky/universe ppc64el libssw-dev ppc64el 1.1-15 [26.2 kB] 156s Get:98 http://ftpmaster.internal/ubuntu plucky/main ppc64el libjbig0 ppc64el 2.1-6.1ubuntu2 [35.9 kB] 156s Get:99 http://ftpmaster.internal/ubuntu plucky/main ppc64el libwebp7 ppc64el 1.4.0-0.1 [309 kB] 156s Get:100 http://ftpmaster.internal/ubuntu plucky/main ppc64el libtiff6 ppc64el 4.5.1+git230720-4ubuntu4 [272 kB] 156s Get:101 http://ftpmaster.internal/ubuntu plucky/main ppc64el libwebpdemux2 ppc64el 1.4.0-0.1 [14.1 kB] 156s Get:102 http://ftpmaster.internal/ubuntu plucky/main ppc64el libwebpmux3 ppc64el 1.4.0-0.1 [31.4 kB] 156s Get:103 http://ftpmaster.internal/ubuntu plucky/main ppc64el libxslt1.1 ppc64el 1.1.39-0exp1ubuntu1 [191 kB] 156s Get:104 http://ftpmaster.internal/ubuntu plucky/universe ppc64el pybuild-plugin-autopkgtest all 6.20241024 [1746 B] 156s Get:105 http://ftpmaster.internal/ubuntu plucky/universe ppc64el python-biom-format-doc all 2.1.16-1 [57.5 kB] 156s Get:106 http://ftpmaster.internal/ubuntu plucky/universe ppc64el python-matplotlib-data all 3.8.3-3 [2928 kB] 156s Get:107 http://ftpmaster.internal/ubuntu plucky/main ppc64el python-numpy-doc all 1:1.26.4+ds-11ubuntu1 [5481 kB] 157s Get:108 http://ftpmaster.internal/ubuntu plucky/main ppc64el libjs-mathjax all 2.7.9+dfsg-1 [5665 kB] 158s Get:109 http://ftpmaster.internal/ubuntu plucky/universe ppc64el python-pandas-doc all 2.2.3+dfsg-5ubuntu1 [9117 kB] 159s Get:110 http://ftpmaster.internal/ubuntu plucky/universe ppc64el python-skbio-doc all 0.6.2-3 [2071 kB] 159s Get:111 http://ftpmaster.internal/ubuntu plucky/main ppc64el python3-all ppc64el 3.12.6-0ubuntu1 [888 B] 159s Get:112 http://ftpmaster.internal/ubuntu plucky/main ppc64el python3.12-dev ppc64el 3.12.7-3 [505 kB] 159s Get:113 http://ftpmaster.internal/ubuntu plucky/main ppc64el python3-dev ppc64el 3.12.6-0ubuntu1 [26.7 kB] 159s Get:114 http://ftpmaster.internal/ubuntu plucky/main ppc64el python3-all-dev ppc64el 3.12.6-0ubuntu1 [908 B] 159s Get:115 http://ftpmaster.internal/ubuntu plucky/main ppc64el python3-appdirs all 1.4.4-4 [10.9 kB] 159s Get:116 http://ftpmaster.internal/ubuntu plucky/universe ppc64el python3-asttokens all 2.4.1-2 [20.8 kB] 159s Get:117 http://ftpmaster.internal/ubuntu plucky/main ppc64el python3-numpy ppc64el 1:1.26.4+ds-11ubuntu1 [5148 kB] 159s Get:118 http://ftpmaster.internal/ubuntu plucky-proposed/universe ppc64el python3-h5py-serial ppc64el 3.11.0-8ubuntu1 [1597 kB] 159s Get:119 http://ftpmaster.internal/ubuntu plucky-proposed/universe ppc64el python3-h5py all 3.11.0-8ubuntu1 [7982 B] 159s Get:120 http://ftpmaster.internal/ubuntu plucky/main ppc64el python3-colorama all 0.4.6-4 [32.1 kB] 159s Get:121 http://ftpmaster.internal/ubuntu plucky/main ppc64el python3-click all 8.1.7-2 [79.5 kB] 160s Get:122 http://ftpmaster.internal/ubuntu plucky/main ppc64el python3-dateutil all 2.9.0-3 [80.2 kB] 160s Get:123 http://ftpmaster.internal/ubuntu plucky/main ppc64el python3-tz all 2024.1-2 [31.4 kB] 160s Get:124 http://ftpmaster.internal/ubuntu plucky/universe ppc64el python3-pandas-lib ppc64el 2.2.3+dfsg-5ubuntu1 [7350 kB] 160s Get:125 http://ftpmaster.internal/ubuntu plucky/universe ppc64el python3-pandas all 2.2.3+dfsg-5ubuntu1 [3112 kB] 161s Get:126 http://ftpmaster.internal/ubuntu plucky/main ppc64el python3-decorator all 5.1.1-5 [10.1 kB] 161s Get:127 http://ftpmaster.internal/ubuntu plucky/universe ppc64el python3-scipy ppc64el 1.13.1-5ubuntu1 [21.5 MB] 163s Get:128 http://ftpmaster.internal/ubuntu plucky/universe ppc64el python3-biom-format ppc64el 2.1.16-1 [152 kB] 163s Get:129 http://ftpmaster.internal/ubuntu plucky/universe ppc64el python3-brotli ppc64el 1.1.0-2build3 [423 kB] 163s Get:130 http://ftpmaster.internal/ubuntu plucky/main ppc64el python3-soupsieve all 2.6-1 [33.0 kB] 163s Get:131 http://ftpmaster.internal/ubuntu plucky/main ppc64el python3-bs4 all 4.12.3-3 [109 kB] 163s Get:132 http://ftpmaster.internal/ubuntu plucky/main ppc64el python3-msgpack ppc64el 1.0.3-3build3 [110 kB] 163s Get:133 http://ftpmaster.internal/ubuntu plucky/universe ppc64el python3-cachecontrol all 0.14.1-1 [19.0 kB] 163s Get:134 http://ftpmaster.internal/ubuntu plucky/universe ppc64el python3-contourpy ppc64el 1.3.0-2build1 [261 kB] 163s Get:135 http://ftpmaster.internal/ubuntu plucky/universe ppc64el python3-cycler all 0.12.1-1 [9716 B] 163s Get:136 http://ftpmaster.internal/ubuntu plucky/main ppc64el python3-defusedxml all 0.7.1-2 [42.0 kB] 163s Get:137 http://ftpmaster.internal/ubuntu plucky/main ppc64el python3.12-doc all 3.12.7-3 [12.4 MB] 164s Get:138 http://ftpmaster.internal/ubuntu plucky/main ppc64el python3-doc all 3.12.6-0ubuntu1 [10.2 kB] 164s Get:139 http://ftpmaster.internal/ubuntu plucky/main ppc64el python3-roman all 4.2-1 [10.0 kB] 164s Get:140 http://ftpmaster.internal/ubuntu plucky/main ppc64el python3-docutils all 0.21.2+dfsg-2 [409 kB] 164s Get:141 http://ftpmaster.internal/ubuntu plucky/universe ppc64el python3-executing all 2.1.0-0.1 [24.4 kB] 164s Get:142 http://ftpmaster.internal/ubuntu plucky/main ppc64el python3-six all 1.16.0-7 [13.1 kB] 164s Get:143 http://ftpmaster.internal/ubuntu plucky/universe ppc64el python3-fs all 2.4.16-4 [91.3 kB] 164s Get:144 http://ftpmaster.internal/ubuntu plucky/main ppc64el python3-lxml ppc64el 5.3.0-1build1 [1751 kB] 165s Get:145 http://ftpmaster.internal/ubuntu plucky/universe ppc64el python3-lz4 ppc64el 4.0.2+dfsg-1build4 [27.8 kB] 165s Get:146 http://ftpmaster.internal/ubuntu plucky/universe ppc64el python3-mpmath all 1.3.0-1 [425 kB] 165s Get:147 http://ftpmaster.internal/ubuntu plucky/universe ppc64el python3-sympy all 1.13.3-1 [4228 kB] 165s Get:148 http://ftpmaster.internal/ubuntu plucky/universe ppc64el python3-ufolib2 all 0.16.1+dfsg1-1 [33.4 kB] 165s Get:149 http://ftpmaster.internal/ubuntu plucky/universe ppc64el unicode-data all 15.1.0-1 [8878 kB] 166s Get:150 http://ftpmaster.internal/ubuntu plucky/universe ppc64el python3-fonttools ppc64el 4.54.1-4ubuntu1 [1725 kB] 166s Get:151 http://ftpmaster.internal/ubuntu plucky/universe ppc64el python3-hdmedians ppc64el 0.14.2-5.1build2 [201 kB] 166s Get:152 http://ftpmaster.internal/ubuntu plucky/main ppc64el python3-imagesize all 1.4.1-1 [6844 B] 166s Get:153 http://ftpmaster.internal/ubuntu plucky/universe ppc64el python3-iniconfig all 1.1.1-2 [6024 B] 166s Get:154 http://ftpmaster.internal/ubuntu plucky/universe ppc64el python3-parso all 0.8.3-1 [67.2 kB] 166s Get:155 http://ftpmaster.internal/ubuntu plucky/universe ppc64el python3-typeshed all 0.0~git20231111.6764465-3 [1274 kB] 166s Get:156 http://ftpmaster.internal/ubuntu plucky/universe ppc64el python3-jedi all 0.19.1+ds1-1 [693 kB] 166s Get:157 http://ftpmaster.internal/ubuntu plucky/universe ppc64el python3-traitlets all 5.14.3+really5.14.3-1 [71.5 kB] 166s Get:158 http://ftpmaster.internal/ubuntu plucky/universe ppc64el python3-matplotlib-inline all 0.1.6-2 [8784 B] 166s Get:159 http://ftpmaster.internal/ubuntu plucky/main ppc64el python3-wcwidth all 0.2.13+dfsg1-1 [26.3 kB] 166s Get:160 http://ftpmaster.internal/ubuntu plucky/universe ppc64el python3-prompt-toolkit all 3.0.48-1 [256 kB] 166s Get:161 http://ftpmaster.internal/ubuntu plucky/universe ppc64el python3-pure-eval all 0.2.3-1 [11.4 kB] 166s Get:162 http://ftpmaster.internal/ubuntu plucky/universe ppc64el python3-stack-data all 0.6.3-1 [22.0 kB] 166s Get:163 http://ftpmaster.internal/ubuntu plucky/main ppc64el python3-ptyprocess all 0.7.0-6 [14.8 kB] 166s Get:164 http://ftpmaster.internal/ubuntu plucky/main ppc64el python3-pexpect all 4.9-2 [48.1 kB] 167s Get:165 http://ftpmaster.internal/ubuntu plucky/universe ppc64el python3-ipython all 8.29.0-1 [569 kB] 167s Get:166 http://ftpmaster.internal/ubuntu plucky/universe ppc64el python3-joblib all 1.3.2-5 [206 kB] 167s Get:167 http://ftpmaster.internal/ubuntu plucky/universe ppc64el python3-kiwisolver ppc64el 1.4.7-2build1 [72.9 kB] 167s Get:168 http://ftpmaster.internal/ubuntu plucky/main ppc64el libopenjp2-7 ppc64el 2.5.0-2ubuntu1 [246 kB] 167s Get:169 http://ftpmaster.internal/ubuntu plucky/main ppc64el python3-pil ppc64el 10.4.0-1ubuntu1 [581 kB] 167s Get:170 http://ftpmaster.internal/ubuntu plucky/main ppc64el python3.12-tk ppc64el 3.12.7-3 [116 kB] 167s Get:171 http://ftpmaster.internal/ubuntu plucky/main ppc64el python3.13-tk ppc64el 3.13.0-2 [107 kB] 167s Get:172 http://ftpmaster.internal/ubuntu plucky/main ppc64el python3-tk ppc64el 3.12.7-1 [9752 B] 167s Get:173 http://ftpmaster.internal/ubuntu plucky/universe ppc64el python3-pil.imagetk ppc64el 10.4.0-1ubuntu1 [9810 B] 167s Get:174 http://ftpmaster.internal/ubuntu plucky/main ppc64el python3-packaging all 24.2-1 [51.5 kB] 167s Get:175 http://ftpmaster.internal/ubuntu plucky/universe ppc64el python3-matplotlib ppc64el 3.8.3-3 [4610 kB] 167s Get:176 http://ftpmaster.internal/ubuntu plucky/universe ppc64el python3-natsort all 8.0.2-2 [33.8 kB] 167s Get:177 http://ftpmaster.internal/ubuntu plucky/main ppc64el sphinx-common all 7.4.7-4 [775 kB] 167s Get:178 http://ftpmaster.internal/ubuntu plucky/main ppc64el python3-alabaster all 0.7.16-0.1 [18.5 kB] 167s Get:179 http://ftpmaster.internal/ubuntu plucky/main ppc64el python3-snowballstemmer all 2.2.0-4build1 [59.8 kB] 167s Get:180 http://ftpmaster.internal/ubuntu plucky/main ppc64el python3-sphinx all 7.4.7-4 [593 kB] 167s Get:181 http://ftpmaster.internal/ubuntu plucky/main ppc64el python3-tabulate all 0.9.0-1 [45.3 kB] 167s Get:182 http://ftpmaster.internal/ubuntu plucky/universe ppc64el python3-numpydoc all 1.6.0-2 [50.5 kB] 167s Get:183 http://ftpmaster.internal/ubuntu plucky/universe ppc64el python3-patsy all 1.0.1-1 [180 kB] 167s Get:184 http://ftpmaster.internal/ubuntu plucky/universe ppc64el python3-pluggy all 1.5.0-1 [21.0 kB] 167s Get:185 http://ftpmaster.internal/ubuntu plucky/universe ppc64el python3-pydata-sphinx-theme all 0.15.4+dfsg-2 [41.5 kB] 167s Get:186 http://ftpmaster.internal/ubuntu plucky/universe ppc64el python3-pytest all 8.3.3-1 [251 kB] 167s Get:187 http://ftpmaster.internal/ubuntu plucky/universe ppc64el python3-statsmodels-lib ppc64el 0.14.4+dfsg-1build1 [2664 kB] 168s Get:188 http://ftpmaster.internal/ubuntu plucky/universe ppc64el python3-statsmodels all 0.14.4+dfsg-1build1 [5011 kB] 168s Get:189 http://ftpmaster.internal/ubuntu plucky/universe ppc64el python3-skbio ppc64el 0.6.2-3 [1438 kB] 168s Get:190 http://ftpmaster.internal/ubuntu plucky/universe ppc64el python3-threadpoolctl all 3.1.0-1 [21.3 kB] 168s Get:191 http://ftpmaster.internal/ubuntu plucky/universe ppc64el python3-sklearn-lib ppc64el 1.4.2+dfsg-6 [3838 kB] 169s Get:192 http://ftpmaster.internal/ubuntu plucky/universe ppc64el python3-sklearn all 1.4.2+dfsg-6 [2257 kB] 169s Get:193 http://ftpmaster.internal/ubuntu plucky/universe ppc64el python3-sphinx-copybutton all 0.5.2-2 [16.6 kB] 169s Get:194 http://ftpmaster.internal/ubuntu plucky/universe ppc64el python3-sphinx-design all 0.6.1-1 [894 kB] 169s Get:195 http://ftpmaster.internal/ubuntu plucky/universe ppc64el python-scipy-doc all 1.13.1-5ubuntu1 [31.2 kB] 170s Fetched 213 MB in 17s (12.9 MB/s) 170s Selecting previously unselected package sgml-base. 170s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 73847 files and directories currently installed.) 170s Preparing to unpack .../000-sgml-base_1.31_all.deb ... 170s Unpacking sgml-base (1.31) ... 170s Selecting previously unselected package architecture-properties:ppc64el. 170s Preparing to unpack .../001-architecture-properties_0.2.3_ppc64el.deb ... 170s Unpacking architecture-properties:ppc64el (0.2.3) ... 170s Selecting previously unselected package m4. 170s Preparing to unpack .../002-m4_1.4.19-4build1_ppc64el.deb ... 170s Unpacking m4 (1.4.19-4build1) ... 170s Selecting previously unselected package autoconf. 170s Preparing to unpack .../003-autoconf_2.72-3_all.deb ... 170s Unpacking autoconf (2.72-3) ... 170s Selecting previously unselected package autotools-dev. 170s Preparing to unpack .../004-autotools-dev_20220109.1_all.deb ... 170s Unpacking autotools-dev (20220109.1) ... 170s Selecting previously unselected package automake. 170s Preparing to unpack .../005-automake_1%3a1.16.5-1.3ubuntu1_all.deb ... 170s Unpacking automake (1:1.16.5-1.3ubuntu1) ... 170s Selecting previously unselected package autopoint. 170s Preparing to unpack .../006-autopoint_0.22.5-2_all.deb ... 170s Unpacking autopoint (0.22.5-2) ... 170s Selecting previously unselected package libtcl8.6:ppc64el. 170s Preparing to unpack .../007-libtcl8.6_8.6.15+dfsg-2_ppc64el.deb ... 170s Unpacking libtcl8.6:ppc64el (8.6.15+dfsg-2) ... 170s Selecting previously unselected package fonts-dejavu-mono. 170s Preparing to unpack .../008-fonts-dejavu-mono_2.37-8_all.deb ... 170s Unpacking fonts-dejavu-mono (2.37-8) ... 170s Selecting previously unselected package fonts-dejavu-core. 170s Preparing to unpack .../009-fonts-dejavu-core_2.37-8_all.deb ... 170s Unpacking fonts-dejavu-core (2.37-8) ... 170s Selecting previously unselected package fontconfig-config. 170s Preparing to unpack .../010-fontconfig-config_2.15.0-1.1ubuntu2_ppc64el.deb ... 170s Unpacking fontconfig-config (2.15.0-1.1ubuntu2) ... 170s Selecting previously unselected package libfontconfig1:ppc64el. 170s Preparing to unpack .../011-libfontconfig1_2.15.0-1.1ubuntu2_ppc64el.deb ... 170s Unpacking libfontconfig1:ppc64el (2.15.0-1.1ubuntu2) ... 170s Selecting previously unselected package libxrender1:ppc64el. 170s Preparing to unpack .../012-libxrender1_1%3a0.9.10-1.1build1_ppc64el.deb ... 170s Unpacking libxrender1:ppc64el (1:0.9.10-1.1build1) ... 170s Selecting previously unselected package libxft2:ppc64el. 170s Preparing to unpack .../013-libxft2_2.3.6-1build1_ppc64el.deb ... 170s Unpacking libxft2:ppc64el (2.3.6-1build1) ... 170s Selecting previously unselected package x11-common. 170s Preparing to unpack .../014-x11-common_1%3a7.7+23ubuntu3_all.deb ... 170s Unpacking x11-common (1:7.7+23ubuntu3) ... 170s Selecting previously unselected package libxss1:ppc64el. 170s Preparing to unpack .../015-libxss1_1%3a1.2.3-1build3_ppc64el.deb ... 170s Unpacking libxss1:ppc64el (1:1.2.3-1build3) ... 170s Selecting previously unselected package libtk8.6:ppc64el. 170s Preparing to unpack .../016-libtk8.6_8.6.15-1_ppc64el.deb ... 170s Unpacking libtk8.6:ppc64el (8.6.15-1) ... 170s Selecting previously unselected package tk8.6-blt2.5. 170s Preparing to unpack .../017-tk8.6-blt2.5_2.5.3+dfsg-7build1_ppc64el.deb ... 170s Unpacking tk8.6-blt2.5 (2.5.3+dfsg-7build1) ... 170s Selecting previously unselected package blt. 170s Preparing to unpack .../018-blt_2.5.3+dfsg-7build1_ppc64el.deb ... 170s Unpacking blt (2.5.3+dfsg-7build1) ... 170s Selecting previously unselected package libisl23:ppc64el. 170s Preparing to unpack .../019-libisl23_0.27-1_ppc64el.deb ... 170s Unpacking libisl23:ppc64el (0.27-1) ... 171s Selecting previously unselected package libmpc3:ppc64el. 171s Preparing to unpack .../020-libmpc3_1.3.1-1build2_ppc64el.deb ... 171s Unpacking libmpc3:ppc64el (1.3.1-1build2) ... 171s Selecting previously unselected package cpp-14-powerpc64le-linux-gnu. 171s Preparing to unpack .../021-cpp-14-powerpc64le-linux-gnu_14.2.0-8ubuntu1_ppc64el.deb ... 171s Unpacking cpp-14-powerpc64le-linux-gnu (14.2.0-8ubuntu1) ... 171s Selecting previously unselected package cpp-14. 171s Preparing to unpack .../022-cpp-14_14.2.0-8ubuntu1_ppc64el.deb ... 171s Unpacking cpp-14 (14.2.0-8ubuntu1) ... 171s Selecting previously unselected package cpp-powerpc64le-linux-gnu. 171s Preparing to unpack .../023-cpp-powerpc64le-linux-gnu_4%3a14.1.0-2ubuntu1_ppc64el.deb ... 171s Unpacking cpp-powerpc64le-linux-gnu (4:14.1.0-2ubuntu1) ... 171s Selecting previously unselected package cpp. 171s Preparing to unpack .../024-cpp_4%3a14.1.0-2ubuntu1_ppc64el.deb ... 171s Unpacking cpp (4:14.1.0-2ubuntu1) ... 171s Selecting previously unselected package libcc1-0:ppc64el. 171s Preparing to unpack .../025-libcc1-0_14.2.0-8ubuntu1_ppc64el.deb ... 171s Unpacking libcc1-0:ppc64el (14.2.0-8ubuntu1) ... 171s Selecting previously unselected package libgomp1:ppc64el. 171s Preparing to unpack .../026-libgomp1_14.2.0-8ubuntu1_ppc64el.deb ... 171s Unpacking libgomp1:ppc64el (14.2.0-8ubuntu1) ... 171s Selecting previously unselected package libitm1:ppc64el. 171s Preparing to unpack .../027-libitm1_14.2.0-8ubuntu1_ppc64el.deb ... 171s Unpacking libitm1:ppc64el (14.2.0-8ubuntu1) ... 171s Selecting previously unselected package libasan8:ppc64el. 171s Preparing to unpack .../028-libasan8_14.2.0-8ubuntu1_ppc64el.deb ... 171s Unpacking libasan8:ppc64el (14.2.0-8ubuntu1) ... 171s Selecting previously unselected package liblsan0:ppc64el. 171s Preparing to unpack .../029-liblsan0_14.2.0-8ubuntu1_ppc64el.deb ... 171s Unpacking liblsan0:ppc64el (14.2.0-8ubuntu1) ... 171s Selecting previously unselected package libtsan2:ppc64el. 171s Preparing to unpack .../030-libtsan2_14.2.0-8ubuntu1_ppc64el.deb ... 171s Unpacking libtsan2:ppc64el (14.2.0-8ubuntu1) ... 171s Selecting previously unselected package libubsan1:ppc64el. 171s Preparing to unpack .../031-libubsan1_14.2.0-8ubuntu1_ppc64el.deb ... 171s Unpacking libubsan1:ppc64el (14.2.0-8ubuntu1) ... 171s Selecting previously unselected package libquadmath0:ppc64el. 171s Preparing to unpack .../032-libquadmath0_14.2.0-8ubuntu1_ppc64el.deb ... 171s Unpacking libquadmath0:ppc64el (14.2.0-8ubuntu1) ... 171s Selecting previously unselected package libgcc-14-dev:ppc64el. 171s Preparing to unpack .../033-libgcc-14-dev_14.2.0-8ubuntu1_ppc64el.deb ... 171s Unpacking libgcc-14-dev:ppc64el (14.2.0-8ubuntu1) ... 171s Selecting previously unselected package gcc-14-powerpc64le-linux-gnu. 171s Preparing to unpack .../034-gcc-14-powerpc64le-linux-gnu_14.2.0-8ubuntu1_ppc64el.deb ... 171s Unpacking gcc-14-powerpc64le-linux-gnu (14.2.0-8ubuntu1) ... 171s Selecting previously unselected package gcc-14. 171s Preparing to unpack .../035-gcc-14_14.2.0-8ubuntu1_ppc64el.deb ... 171s Unpacking gcc-14 (14.2.0-8ubuntu1) ... 171s Selecting previously unselected package gcc-powerpc64le-linux-gnu. 171s Preparing to unpack .../036-gcc-powerpc64le-linux-gnu_4%3a14.1.0-2ubuntu1_ppc64el.deb ... 171s Unpacking gcc-powerpc64le-linux-gnu (4:14.1.0-2ubuntu1) ... 171s Selecting previously unselected package gcc. 171s Preparing to unpack .../037-gcc_4%3a14.1.0-2ubuntu1_ppc64el.deb ... 171s Unpacking gcc (4:14.1.0-2ubuntu1) ... 171s Selecting previously unselected package libstdc++-14-dev:ppc64el. 171s Preparing to unpack .../038-libstdc++-14-dev_14.2.0-8ubuntu1_ppc64el.deb ... 171s Unpacking libstdc++-14-dev:ppc64el (14.2.0-8ubuntu1) ... 172s Selecting previously unselected package g++-14-powerpc64le-linux-gnu. 172s Preparing to unpack .../039-g++-14-powerpc64le-linux-gnu_14.2.0-8ubuntu1_ppc64el.deb ... 172s Unpacking g++-14-powerpc64le-linux-gnu (14.2.0-8ubuntu1) ... 172s Selecting previously unselected package g++-14. 172s Preparing to unpack .../040-g++-14_14.2.0-8ubuntu1_ppc64el.deb ... 172s Unpacking g++-14 (14.2.0-8ubuntu1) ... 172s Selecting previously unselected package g++-powerpc64le-linux-gnu. 172s Preparing to unpack .../041-g++-powerpc64le-linux-gnu_4%3a14.1.0-2ubuntu1_ppc64el.deb ... 172s Unpacking g++-powerpc64le-linux-gnu (4:14.1.0-2ubuntu1) ... 172s Selecting previously unselected package g++. 172s Preparing to unpack .../042-g++_4%3a14.1.0-2ubuntu1_ppc64el.deb ... 172s Unpacking g++ (4:14.1.0-2ubuntu1) ... 172s Selecting previously unselected package build-essential. 172s Preparing to unpack .../043-build-essential_12.10ubuntu1_ppc64el.deb ... 172s Unpacking build-essential (12.10ubuntu1) ... 172s Selecting previously unselected package cython3. 172s Preparing to unpack .../044-cython3_3.0.11+dfsg-1ubuntu2_ppc64el.deb ... 172s Unpacking cython3 (3.0.11+dfsg-1ubuntu2) ... 172s Selecting previously unselected package libdebhelper-perl. 172s Preparing to unpack .../045-libdebhelper-perl_13.20ubuntu1_all.deb ... 172s Unpacking libdebhelper-perl (13.20ubuntu1) ... 172s Selecting previously unselected package libtool. 172s Preparing to unpack .../046-libtool_2.4.7-8_all.deb ... 172s Unpacking libtool (2.4.7-8) ... 172s Selecting previously unselected package dh-autoreconf. 172s Preparing to unpack .../047-dh-autoreconf_20_all.deb ... 172s Unpacking dh-autoreconf (20) ... 172s Selecting previously unselected package libarchive-zip-perl. 172s Preparing to unpack .../048-libarchive-zip-perl_1.68-1_all.deb ... 172s Unpacking libarchive-zip-perl (1.68-1) ... 172s Selecting previously unselected package libfile-stripnondeterminism-perl. 172s Preparing to unpack .../049-libfile-stripnondeterminism-perl_1.14.0-1_all.deb ... 172s Unpacking libfile-stripnondeterminism-perl (1.14.0-1) ... 172s Selecting previously unselected package dh-strip-nondeterminism. 172s Preparing to unpack .../050-dh-strip-nondeterminism_1.14.0-1_all.deb ... 172s Unpacking dh-strip-nondeterminism (1.14.0-1) ... 172s Selecting previously unselected package debugedit. 172s Preparing to unpack .../051-debugedit_1%3a5.1-1_ppc64el.deb ... 172s Unpacking debugedit (1:5.1-1) ... 172s Selecting previously unselected package dwz. 172s Preparing to unpack .../052-dwz_0.15-1build6_ppc64el.deb ... 172s Unpacking dwz (0.15-1build6) ... 172s Selecting previously unselected package gettext. 172s Preparing to unpack .../053-gettext_0.22.5-2_ppc64el.deb ... 172s Unpacking gettext (0.22.5-2) ... 172s Selecting previously unselected package intltool-debian. 172s Preparing to unpack .../054-intltool-debian_0.35.0+20060710.6_all.deb ... 172s Unpacking intltool-debian (0.35.0+20060710.6) ... 172s Selecting previously unselected package po-debconf. 172s Preparing to unpack .../055-po-debconf_1.0.21+nmu1_all.deb ... 172s Unpacking po-debconf (1.0.21+nmu1) ... 172s Selecting previously unselected package debhelper. 172s Preparing to unpack .../056-debhelper_13.20ubuntu1_all.deb ... 172s Unpacking debhelper (13.20ubuntu1) ... 172s Selecting previously unselected package dh-python. 172s Preparing to unpack .../057-dh-python_6.20241024_all.deb ... 172s Unpacking dh-python (6.20241024) ... 172s Selecting previously unselected package xml-core. 172s Preparing to unpack .../058-xml-core_0.19_all.deb ... 172s Unpacking xml-core (0.19) ... 172s Selecting previously unselected package docutils-common. 172s Preparing to unpack .../059-docutils-common_0.21.2+dfsg-2_all.deb ... 172s Unpacking docutils-common (0.21.2+dfsg-2) ... 172s Selecting previously unselected package fonts-lyx. 172s Preparing to unpack .../060-fonts-lyx_2.4.2.1-1_all.deb ... 172s Unpacking fonts-lyx (2.4.2.1-1) ... 172s Selecting previously unselected package fonts-mathjax. 172s Preparing to unpack .../061-fonts-mathjax_2.7.9+dfsg-1_all.deb ... 172s Unpacking fonts-mathjax (2.7.9+dfsg-1) ... 173s Selecting previously unselected package fonts-open-sans. 173s Preparing to unpack .../062-fonts-open-sans_1.11-2_all.deb ... 173s Unpacking fonts-open-sans (1.11-2) ... 173s Selecting previously unselected package libaec0:ppc64el. 173s Preparing to unpack .../063-libaec0_1.1.3-1_ppc64el.deb ... 173s Unpacking libaec0:ppc64el (1.1.3-1) ... 173s Selecting previously unselected package libblas3:ppc64el. 173s Preparing to unpack .../064-libblas3_3.12.0-3build2_ppc64el.deb ... 173s Unpacking libblas3:ppc64el (3.12.0-3build2) ... 173s Selecting previously unselected package libdeflate0:ppc64el. 173s Preparing to unpack .../065-libdeflate0_1.22-1_ppc64el.deb ... 173s Unpacking libdeflate0:ppc64el (1.22-1) ... 173s Selecting previously unselected package libexpat1-dev:ppc64el. 173s Preparing to unpack .../066-libexpat1-dev_2.6.4-1_ppc64el.deb ... 173s Unpacking libexpat1-dev:ppc64el (2.6.4-1) ... 173s Selecting previously unselected package libgfortran5:ppc64el. 173s Preparing to unpack .../067-libgfortran5_14.2.0-8ubuntu1_ppc64el.deb ... 173s Unpacking libgfortran5:ppc64el (14.2.0-8ubuntu1) ... 173s Selecting previously unselected package libgraphite2-3:ppc64el. 173s Preparing to unpack .../068-libgraphite2-3_1.3.14-2ubuntu1_ppc64el.deb ... 173s Unpacking libgraphite2-3:ppc64el (1.3.14-2ubuntu1) ... 173s Selecting previously unselected package libharfbuzz0b:ppc64el. 173s Preparing to unpack .../069-libharfbuzz0b_10.0.1-1_ppc64el.deb ... 173s Unpacking libharfbuzz0b:ppc64el (10.0.1-1) ... 173s Selecting previously unselected package libsz2:ppc64el. 173s Preparing to unpack .../070-libsz2_1.1.3-1_ppc64el.deb ... 173s Unpacking libsz2:ppc64el (1.1.3-1) ... 173s Selecting previously unselected package libhdf5-103-1t64:ppc64el. 173s Preparing to unpack .../071-libhdf5-103-1t64_1.10.10+repack-4ubuntu3_ppc64el.deb ... 173s Unpacking libhdf5-103-1t64:ppc64el (1.10.10+repack-4ubuntu3) ... 173s Selecting previously unselected package libhdf5-hl-100t64:ppc64el. 173s Preparing to unpack .../072-libhdf5-hl-100t64_1.10.10+repack-4ubuntu3_ppc64el.deb ... 173s Unpacking libhdf5-hl-100t64:ppc64el (1.10.10+repack-4ubuntu3) ... 173s Selecting previously unselected package libimagequant0:ppc64el. 173s Preparing to unpack .../073-libimagequant0_2.18.0-1build1_ppc64el.deb ... 173s Unpacking libimagequant0:ppc64el (2.18.0-1build1) ... 173s Selecting previously unselected package libjpeg-turbo8:ppc64el. 173s Preparing to unpack .../074-libjpeg-turbo8_2.1.5-2ubuntu2_ppc64el.deb ... 173s Unpacking libjpeg-turbo8:ppc64el (2.1.5-2ubuntu2) ... 173s Selecting previously unselected package libjpeg8:ppc64el. 173s Preparing to unpack .../075-libjpeg8_8c-2ubuntu11_ppc64el.deb ... 173s Unpacking libjpeg8:ppc64el (8c-2ubuntu11) ... 173s Selecting previously unselected package libjs-jquery. 173s Preparing to unpack .../076-libjs-jquery_3.6.1+dfsg+~3.5.14-1_all.deb ... 173s Unpacking libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... 173s Selecting previously unselected package libjs-jquery-ui. 173s Preparing to unpack .../077-libjs-jquery-ui_1.13.2+dfsg-1_all.deb ... 173s Unpacking libjs-jquery-ui (1.13.2+dfsg-1) ... 173s Selecting previously unselected package libjs-underscore. 173s Preparing to unpack .../078-libjs-underscore_1.13.4~dfsg+~1.11.4-3_all.deb ... 173s Unpacking libjs-underscore (1.13.4~dfsg+~1.11.4-3) ... 173s Selecting previously unselected package libjs-sphinxdoc. 173s Preparing to unpack .../079-libjs-sphinxdoc_7.4.7-4_all.deb ... 173s Unpacking libjs-sphinxdoc (7.4.7-4) ... 173s Selecting previously unselected package libjson-perl. 173s Preparing to unpack .../080-libjson-perl_4.10000-1_all.deb ... 173s Unpacking libjson-perl (4.10000-1) ... 173s Selecting previously unselected package liblapack3:ppc64el. 173s Preparing to unpack .../081-liblapack3_3.12.0-3build2_ppc64el.deb ... 173s Unpacking liblapack3:ppc64el (3.12.0-3build2) ... 173s Selecting previously unselected package liblbfgsb0:ppc64el. 173s Preparing to unpack .../082-liblbfgsb0_3.0+dfsg.4-1build1_ppc64el.deb ... 173s Unpacking liblbfgsb0:ppc64el (3.0+dfsg.4-1build1) ... 173s Selecting previously unselected package liblcms2-2:ppc64el. 173s Preparing to unpack .../083-liblcms2-2_2.16-2_ppc64el.deb ... 173s Unpacking liblcms2-2:ppc64el (2.16-2) ... 173s Selecting previously unselected package liblerc4:ppc64el. 173s Preparing to unpack .../084-liblerc4_4.0.0+ds-4ubuntu2_ppc64el.deb ... 173s Unpacking liblerc4:ppc64el (4.0.0+ds-4ubuntu2) ... 173s Selecting previously unselected package liblzf1:ppc64el. 173s Preparing to unpack .../085-liblzf1_3.6-4_ppc64el.deb ... 173s Unpacking liblzf1:ppc64el (3.6-4) ... 173s Selecting previously unselected package zlib1g-dev:ppc64el. 173s Preparing to unpack .../086-zlib1g-dev_1%3a1.3.dfsg+really1.3.1-1ubuntu1_ppc64el.deb ... 173s Unpacking zlib1g-dev:ppc64el (1:1.3.dfsg+really1.3.1-1ubuntu1) ... 173s Selecting previously unselected package libpython3.12-dev:ppc64el. 173s Preparing to unpack .../087-libpython3.12-dev_3.12.7-3_ppc64el.deb ... 173s Unpacking libpython3.12-dev:ppc64el (3.12.7-3) ... 173s Selecting previously unselected package libpython3-dev:ppc64el. 173s Preparing to unpack .../088-libpython3-dev_3.12.6-0ubuntu1_ppc64el.deb ... 173s Unpacking libpython3-dev:ppc64el (3.12.6-0ubuntu1) ... 173s Selecting previously unselected package libpython3-all-dev:ppc64el. 173s Preparing to unpack .../089-libpython3-all-dev_3.12.6-0ubuntu1_ppc64el.deb ... 173s Unpacking libpython3-all-dev:ppc64el (3.12.6-0ubuntu1) ... 173s Selecting previously unselected package libqhull-r8.0:ppc64el. 173s Preparing to unpack .../090-libqhull-r8.0_2020.2-6build1_ppc64el.deb ... 173s Unpacking libqhull-r8.0:ppc64el (2020.2-6build1) ... 173s Selecting previously unselected package libraqm0:ppc64el. 173s Preparing to unpack .../091-libraqm0_0.10.1-1build1_ppc64el.deb ... 173s Unpacking libraqm0:ppc64el (0.10.1-1build1) ... 173s Selecting previously unselected package libsharpyuv0:ppc64el. 173s Preparing to unpack .../092-libsharpyuv0_1.4.0-0.1_ppc64el.deb ... 173s Unpacking libsharpyuv0:ppc64el (1.4.0-0.1) ... 173s Selecting previously unselected package libsimde-dev. 173s Preparing to unpack .../093-libsimde-dev_0.8.2-1_all.deb ... 173s Unpacking libsimde-dev (0.8.2-1) ... 174s Selecting previously unselected package libssw0:ppc64el. 174s Preparing to unpack .../094-libssw0_1.1-15_ppc64el.deb ... 174s Unpacking libssw0:ppc64el (1.1-15) ... 174s Selecting previously unselected package libssw-dev:ppc64el. 174s Preparing to unpack .../095-libssw-dev_1.1-15_ppc64el.deb ... 174s Unpacking libssw-dev:ppc64el (1.1-15) ... 174s Selecting previously unselected package libjbig0:ppc64el. 174s Preparing to unpack .../096-libjbig0_2.1-6.1ubuntu2_ppc64el.deb ... 174s Unpacking libjbig0:ppc64el (2.1-6.1ubuntu2) ... 174s Selecting previously unselected package libwebp7:ppc64el. 174s Preparing to unpack .../097-libwebp7_1.4.0-0.1_ppc64el.deb ... 174s Unpacking libwebp7:ppc64el (1.4.0-0.1) ... 174s Selecting previously unselected package libtiff6:ppc64el. 174s Preparing to unpack .../098-libtiff6_4.5.1+git230720-4ubuntu4_ppc64el.deb ... 174s Unpacking libtiff6:ppc64el (4.5.1+git230720-4ubuntu4) ... 174s Selecting previously unselected package libwebpdemux2:ppc64el. 174s Preparing to unpack .../099-libwebpdemux2_1.4.0-0.1_ppc64el.deb ... 174s Unpacking libwebpdemux2:ppc64el (1.4.0-0.1) ... 174s Selecting previously unselected package libwebpmux3:ppc64el. 174s Preparing to unpack .../100-libwebpmux3_1.4.0-0.1_ppc64el.deb ... 174s Unpacking libwebpmux3:ppc64el (1.4.0-0.1) ... 174s Selecting previously unselected package libxslt1.1:ppc64el. 174s Preparing to unpack .../101-libxslt1.1_1.1.39-0exp1ubuntu1_ppc64el.deb ... 174s Unpacking libxslt1.1:ppc64el (1.1.39-0exp1ubuntu1) ... 174s Selecting previously unselected package pybuild-plugin-autopkgtest. 174s Preparing to unpack .../102-pybuild-plugin-autopkgtest_6.20241024_all.deb ... 174s Unpacking pybuild-plugin-autopkgtest (6.20241024) ... 174s Selecting previously unselected package python-biom-format-doc. 174s Preparing to unpack .../103-python-biom-format-doc_2.1.16-1_all.deb ... 174s Unpacking python-biom-format-doc (2.1.16-1) ... 174s Selecting previously unselected package python-matplotlib-data. 174s Preparing to unpack .../104-python-matplotlib-data_3.8.3-3_all.deb ... 174s Unpacking python-matplotlib-data (3.8.3-3) ... 174s Selecting previously unselected package python-numpy-doc. 174s Preparing to unpack .../105-python-numpy-doc_1%3a1.26.4+ds-11ubuntu1_all.deb ... 174s Unpacking python-numpy-doc (1:1.26.4+ds-11ubuntu1) ... 174s Selecting previously unselected package libjs-mathjax. 174s Preparing to unpack .../106-libjs-mathjax_2.7.9+dfsg-1_all.deb ... 174s Unpacking libjs-mathjax (2.7.9+dfsg-1) ... 175s Selecting previously unselected package python-pandas-doc. 175s Preparing to unpack .../107-python-pandas-doc_2.2.3+dfsg-5ubuntu1_all.deb ... 175s Unpacking python-pandas-doc (2.2.3+dfsg-5ubuntu1) ... 177s Selecting previously unselected package python-skbio-doc. 177s Preparing to unpack .../108-python-skbio-doc_0.6.2-3_all.deb ... 177s Unpacking python-skbio-doc (0.6.2-3) ... 177s Selecting previously unselected package python3-all. 177s Preparing to unpack .../109-python3-all_3.12.6-0ubuntu1_ppc64el.deb ... 177s Unpacking python3-all (3.12.6-0ubuntu1) ... 177s Selecting previously unselected package python3.12-dev. 177s Preparing to unpack .../110-python3.12-dev_3.12.7-3_ppc64el.deb ... 177s Unpacking python3.12-dev (3.12.7-3) ... 177s Selecting previously unselected package python3-dev. 177s Preparing to unpack .../111-python3-dev_3.12.6-0ubuntu1_ppc64el.deb ... 177s Unpacking python3-dev (3.12.6-0ubuntu1) ... 177s Selecting previously unselected package python3-all-dev. 177s Preparing to unpack .../112-python3-all-dev_3.12.6-0ubuntu1_ppc64el.deb ... 177s Unpacking python3-all-dev (3.12.6-0ubuntu1) ... 177s Selecting previously unselected package python3-appdirs. 177s Preparing to unpack .../113-python3-appdirs_1.4.4-4_all.deb ... 177s Unpacking python3-appdirs (1.4.4-4) ... 177s Selecting previously unselected package python3-asttokens. 177s Preparing to unpack .../114-python3-asttokens_2.4.1-2_all.deb ... 177s Unpacking python3-asttokens (2.4.1-2) ... 177s Selecting previously unselected package python3-numpy. 177s Preparing to unpack .../115-python3-numpy_1%3a1.26.4+ds-11ubuntu1_ppc64el.deb ... 177s Unpacking python3-numpy (1:1.26.4+ds-11ubuntu1) ... 177s Selecting previously unselected package python3-h5py-serial. 177s Preparing to unpack .../116-python3-h5py-serial_3.11.0-8ubuntu1_ppc64el.deb ... 177s Unpacking python3-h5py-serial (3.11.0-8ubuntu1) ... 177s Selecting previously unselected package python3-h5py. 177s Preparing to unpack .../117-python3-h5py_3.11.0-8ubuntu1_all.deb ... 177s Unpacking python3-h5py (3.11.0-8ubuntu1) ... 177s Selecting previously unselected package python3-colorama. 177s Preparing to unpack .../118-python3-colorama_0.4.6-4_all.deb ... 177s Unpacking python3-colorama (0.4.6-4) ... 177s Selecting previously unselected package python3-click. 177s Preparing to unpack .../119-python3-click_8.1.7-2_all.deb ... 177s Unpacking python3-click (8.1.7-2) ... 177s Selecting previously unselected package python3-dateutil. 177s Preparing to unpack .../120-python3-dateutil_2.9.0-3_all.deb ... 177s Unpacking python3-dateutil (2.9.0-3) ... 177s Selecting previously unselected package python3-tz. 177s Preparing to unpack .../121-python3-tz_2024.1-2_all.deb ... 177s Unpacking python3-tz (2024.1-2) ... 177s Selecting previously unselected package python3-pandas-lib:ppc64el. 177s Preparing to unpack .../122-python3-pandas-lib_2.2.3+dfsg-5ubuntu1_ppc64el.deb ... 177s Unpacking python3-pandas-lib:ppc64el (2.2.3+dfsg-5ubuntu1) ... 178s Selecting previously unselected package python3-pandas. 178s Preparing to unpack .../123-python3-pandas_2.2.3+dfsg-5ubuntu1_all.deb ... 178s Unpacking python3-pandas (2.2.3+dfsg-5ubuntu1) ... 178s Selecting previously unselected package python3-decorator. 178s Preparing to unpack .../124-python3-decorator_5.1.1-5_all.deb ... 178s Unpacking python3-decorator (5.1.1-5) ... 178s Selecting previously unselected package python3-scipy. 178s Preparing to unpack .../125-python3-scipy_1.13.1-5ubuntu1_ppc64el.deb ... 178s Unpacking python3-scipy (1.13.1-5ubuntu1) ... 179s Selecting previously unselected package python3-biom-format. 179s Preparing to unpack .../126-python3-biom-format_2.1.16-1_ppc64el.deb ... 179s Unpacking python3-biom-format (2.1.16-1) ... 179s Selecting previously unselected package python3-brotli. 179s Preparing to unpack .../127-python3-brotli_1.1.0-2build3_ppc64el.deb ... 179s Unpacking python3-brotli (1.1.0-2build3) ... 179s Selecting previously unselected package python3-soupsieve. 179s Preparing to unpack .../128-python3-soupsieve_2.6-1_all.deb ... 179s Unpacking python3-soupsieve (2.6-1) ... 179s Selecting previously unselected package python3-bs4. 179s Preparing to unpack .../129-python3-bs4_4.12.3-3_all.deb ... 179s Unpacking python3-bs4 (4.12.3-3) ... 179s Selecting previously unselected package python3-msgpack. 179s Preparing to unpack .../130-python3-msgpack_1.0.3-3build3_ppc64el.deb ... 179s Unpacking python3-msgpack (1.0.3-3build3) ... 179s Selecting previously unselected package python3-cachecontrol. 179s Preparing to unpack .../131-python3-cachecontrol_0.14.1-1_all.deb ... 179s Unpacking python3-cachecontrol (0.14.1-1) ... 179s Selecting previously unselected package python3-contourpy. 179s Preparing to unpack .../132-python3-contourpy_1.3.0-2build1_ppc64el.deb ... 179s Unpacking python3-contourpy (1.3.0-2build1) ... 179s Selecting previously unselected package python3-cycler. 179s Preparing to unpack .../133-python3-cycler_0.12.1-1_all.deb ... 179s Unpacking python3-cycler (0.12.1-1) ... 179s Selecting previously unselected package python3-defusedxml. 179s Preparing to unpack .../134-python3-defusedxml_0.7.1-2_all.deb ... 179s Unpacking python3-defusedxml (0.7.1-2) ... 179s Selecting previously unselected package python3.12-doc. 179s Preparing to unpack .../135-python3.12-doc_3.12.7-3_all.deb ... 179s Unpacking python3.12-doc (3.12.7-3) ... 179s Selecting previously unselected package python3-doc. 179s Preparing to unpack .../136-python3-doc_3.12.6-0ubuntu1_all.deb ... 179s Unpacking python3-doc (3.12.6-0ubuntu1) ... 179s Selecting previously unselected package python3-roman. 179s Preparing to unpack .../137-python3-roman_4.2-1_all.deb ... 179s Unpacking python3-roman (4.2-1) ... 179s Selecting previously unselected package python3-docutils. 179s Preparing to unpack .../138-python3-docutils_0.21.2+dfsg-2_all.deb ... 179s Unpacking python3-docutils (0.21.2+dfsg-2) ... 179s Selecting previously unselected package python3-executing. 179s Preparing to unpack .../139-python3-executing_2.1.0-0.1_all.deb ... 179s Unpacking python3-executing (2.1.0-0.1) ... 179s Selecting previously unselected package python3-six. 179s Preparing to unpack .../140-python3-six_1.16.0-7_all.deb ... 179s Unpacking python3-six (1.16.0-7) ... 179s Selecting previously unselected package python3-fs. 179s Preparing to unpack .../141-python3-fs_2.4.16-4_all.deb ... 179s Unpacking python3-fs (2.4.16-4) ... 179s Selecting previously unselected package python3-lxml:ppc64el. 179s Preparing to unpack .../142-python3-lxml_5.3.0-1build1_ppc64el.deb ... 179s Unpacking python3-lxml:ppc64el (5.3.0-1build1) ... 180s Selecting previously unselected package python3-lz4. 180s Preparing to unpack .../143-python3-lz4_4.0.2+dfsg-1build4_ppc64el.deb ... 180s Unpacking python3-lz4 (4.0.2+dfsg-1build4) ... 180s Selecting previously unselected package python3-mpmath. 180s Preparing to unpack .../144-python3-mpmath_1.3.0-1_all.deb ... 180s Unpacking python3-mpmath (1.3.0-1) ... 180s Selecting previously unselected package python3-sympy. 180s Preparing to unpack .../145-python3-sympy_1.13.3-1_all.deb ... 180s Unpacking python3-sympy (1.13.3-1) ... 180s Selecting previously unselected package python3-ufolib2. 180s Preparing to unpack .../146-python3-ufolib2_0.16.1+dfsg1-1_all.deb ... 180s Unpacking python3-ufolib2 (0.16.1+dfsg1-1) ... 180s Selecting previously unselected package unicode-data. 180s Preparing to unpack .../147-unicode-data_15.1.0-1_all.deb ... 180s Unpacking unicode-data (15.1.0-1) ... 180s Selecting previously unselected package python3-fonttools. 180s Preparing to unpack .../148-python3-fonttools_4.54.1-4ubuntu1_ppc64el.deb ... 180s Unpacking python3-fonttools (4.54.1-4ubuntu1) ... 180s Selecting previously unselected package python3-hdmedians. 180s Preparing to unpack .../149-python3-hdmedians_0.14.2-5.1build2_ppc64el.deb ... 180s Unpacking python3-hdmedians (0.14.2-5.1build2) ... 180s Selecting previously unselected package python3-imagesize. 180s Preparing to unpack .../150-python3-imagesize_1.4.1-1_all.deb ... 180s Unpacking python3-imagesize (1.4.1-1) ... 180s Selecting previously unselected package python3-iniconfig. 180s Preparing to unpack .../151-python3-iniconfig_1.1.1-2_all.deb ... 180s Unpacking python3-iniconfig (1.1.1-2) ... 180s Selecting previously unselected package python3-parso. 180s Preparing to unpack .../152-python3-parso_0.8.3-1_all.deb ... 180s Unpacking python3-parso (0.8.3-1) ... 180s Selecting previously unselected package python3-typeshed. 180s Preparing to unpack .../153-python3-typeshed_0.0~git20231111.6764465-3_all.deb ... 180s Unpacking python3-typeshed (0.0~git20231111.6764465-3) ... 181s Selecting previously unselected package python3-jedi. 181s Preparing to unpack .../154-python3-jedi_0.19.1+ds1-1_all.deb ... 181s Unpacking python3-jedi (0.19.1+ds1-1) ... 181s Selecting previously unselected package python3-traitlets. 181s Preparing to unpack .../155-python3-traitlets_5.14.3+really5.14.3-1_all.deb ... 181s Unpacking python3-traitlets (5.14.3+really5.14.3-1) ... 181s Selecting previously unselected package python3-matplotlib-inline. 181s Preparing to unpack .../156-python3-matplotlib-inline_0.1.6-2_all.deb ... 181s Unpacking python3-matplotlib-inline (0.1.6-2) ... 181s Selecting previously unselected package python3-wcwidth. 181s Preparing to unpack .../157-python3-wcwidth_0.2.13+dfsg1-1_all.deb ... 181s Unpacking python3-wcwidth (0.2.13+dfsg1-1) ... 181s Selecting previously unselected package python3-prompt-toolkit. 181s Preparing to unpack .../158-python3-prompt-toolkit_3.0.48-1_all.deb ... 181s Unpacking python3-prompt-toolkit (3.0.48-1) ... 181s Selecting previously unselected package python3-pure-eval. 181s Preparing to unpack .../159-python3-pure-eval_0.2.3-1_all.deb ... 181s Unpacking python3-pure-eval (0.2.3-1) ... 181s Selecting previously unselected package python3-stack-data. 181s Preparing to unpack .../160-python3-stack-data_0.6.3-1_all.deb ... 181s Unpacking python3-stack-data (0.6.3-1) ... 181s Selecting previously unselected package python3-ptyprocess. 181s Preparing to unpack .../161-python3-ptyprocess_0.7.0-6_all.deb ... 181s Unpacking python3-ptyprocess (0.7.0-6) ... 181s Selecting previously unselected package python3-pexpect. 181s Preparing to unpack .../162-python3-pexpect_4.9-2_all.deb ... 181s Unpacking python3-pexpect (4.9-2) ... 181s Selecting previously unselected package python3-ipython. 181s Preparing to unpack .../163-python3-ipython_8.29.0-1_all.deb ... 181s Unpacking python3-ipython (8.29.0-1) ... 181s Selecting previously unselected package python3-joblib. 181s Preparing to unpack .../164-python3-joblib_1.3.2-5_all.deb ... 181s Unpacking python3-joblib (1.3.2-5) ... 181s Selecting previously unselected package python3-kiwisolver. 181s Preparing to unpack .../165-python3-kiwisolver_1.4.7-2build1_ppc64el.deb ... 181s Unpacking python3-kiwisolver (1.4.7-2build1) ... 181s Selecting previously unselected package libopenjp2-7:ppc64el. 181s Preparing to unpack .../166-libopenjp2-7_2.5.0-2ubuntu1_ppc64el.deb ... 181s Unpacking libopenjp2-7:ppc64el (2.5.0-2ubuntu1) ... 181s Selecting previously unselected package python3-pil:ppc64el. 181s Preparing to unpack .../167-python3-pil_10.4.0-1ubuntu1_ppc64el.deb ... 181s Unpacking python3-pil:ppc64el (10.4.0-1ubuntu1) ... 181s Selecting previously unselected package python3.12-tk. 181s Preparing to unpack .../168-python3.12-tk_3.12.7-3_ppc64el.deb ... 181s Unpacking python3.12-tk (3.12.7-3) ... 181s Selecting previously unselected package python3.13-tk. 181s Preparing to unpack .../169-python3.13-tk_3.13.0-2_ppc64el.deb ... 181s Unpacking python3.13-tk (3.13.0-2) ... 181s Selecting previously unselected package python3-tk:ppc64el. 181s Preparing to unpack .../170-python3-tk_3.12.7-1_ppc64el.deb ... 181s Unpacking python3-tk:ppc64el (3.12.7-1) ... 181s Selecting previously unselected package python3-pil.imagetk:ppc64el. 181s Preparing to unpack .../171-python3-pil.imagetk_10.4.0-1ubuntu1_ppc64el.deb ... 181s Unpacking python3-pil.imagetk:ppc64el (10.4.0-1ubuntu1) ... 181s Selecting previously unselected package python3-packaging. 182s Preparing to unpack .../172-python3-packaging_24.2-1_all.deb ... 182s Unpacking python3-packaging (24.2-1) ... 182s Selecting previously unselected package python3-matplotlib. 182s Preparing to unpack .../173-python3-matplotlib_3.8.3-3_ppc64el.deb ... 182s Unpacking python3-matplotlib (3.8.3-3) ... 182s Selecting previously unselected package python3-natsort. 182s Preparing to unpack .../174-python3-natsort_8.0.2-2_all.deb ... 182s Unpacking python3-natsort (8.0.2-2) ... 182s Selecting previously unselected package sphinx-common. 182s Preparing to unpack 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python3-numpydoc (1.6.0-2) ... 182s Selecting previously unselected package python3-patsy. 182s Preparing to unpack .../181-python3-patsy_1.0.1-1_all.deb ... 182s Unpacking python3-patsy (1.0.1-1) ... 182s Selecting previously unselected package python3-pluggy. 182s Preparing to unpack .../182-python3-pluggy_1.5.0-1_all.deb ... 182s Unpacking python3-pluggy (1.5.0-1) ... 182s Selecting previously unselected package python3-pydata-sphinx-theme. 182s Preparing to unpack .../183-python3-pydata-sphinx-theme_0.15.4+dfsg-2_all.deb ... 182s Unpacking python3-pydata-sphinx-theme (0.15.4+dfsg-2) ... 182s Selecting previously unselected package python3-pytest. 182s Preparing to unpack .../184-python3-pytest_8.3.3-1_all.deb ... 182s Unpacking python3-pytest (8.3.3-1) ... 182s Selecting previously unselected package python3-statsmodels-lib:ppc64el. 182s Preparing to unpack .../185-python3-statsmodels-lib_0.14.4+dfsg-1build1_ppc64el.deb ... 182s Unpacking python3-statsmodels-lib:ppc64el (0.14.4+dfsg-1build1) ... 182s Selecting previously unselected package python3-statsmodels. 182s Preparing to unpack .../186-python3-statsmodels_0.14.4+dfsg-1build1_all.deb ... 182s Unpacking python3-statsmodels (0.14.4+dfsg-1build1) ... 182s Selecting previously unselected package python3-skbio. 182s Preparing to unpack .../187-python3-skbio_0.6.2-3_ppc64el.deb ... 182s Unpacking python3-skbio (0.6.2-3) ... 183s Selecting previously unselected package python3-threadpoolctl. 183s Preparing to unpack .../188-python3-threadpoolctl_3.1.0-1_all.deb ... 183s Unpacking python3-threadpoolctl (3.1.0-1) ... 183s Selecting previously unselected package python3-sklearn-lib:ppc64el. 183s Preparing to unpack .../189-python3-sklearn-lib_1.4.2+dfsg-6_ppc64el.deb ... 183s Unpacking python3-sklearn-lib:ppc64el (1.4.2+dfsg-6) ... 183s Selecting previously unselected package python3-sklearn. 183s Preparing to unpack .../190-python3-sklearn_1.4.2+dfsg-6_all.deb ... 183s Unpacking python3-sklearn (1.4.2+dfsg-6) ... 183s Selecting previously unselected package python3-sphinx-copybutton. 183s Preparing to unpack .../191-python3-sphinx-copybutton_0.5.2-2_all.deb ... 183s Unpacking python3-sphinx-copybutton (0.5.2-2) ... 183s Selecting previously unselected package python3-sphinx-design. 183s Preparing to unpack .../192-python3-sphinx-design_0.6.1-1_all.deb ... 183s Unpacking python3-sphinx-design (0.6.1-1) ... 183s Selecting previously unselected package python-scipy-doc. 183s Preparing to unpack .../193-python-scipy-doc_1.13.1-5ubuntu1_all.deb ... 183s Unpacking python-scipy-doc (1.13.1-5ubuntu1) ... 183s Selecting previously unselected package autopkgtest-satdep. 183s Preparing to unpack .../194-1-autopkgtest-satdep.deb ... 183s Unpacking autopkgtest-satdep (0) ... 183s Setting up dh-python (6.20241024) ... 183s Setting up libgraphite2-3:ppc64el (1.3.14-2ubuntu1) ... 183s Setting up libsimde-dev (0.8.2-1) ... 183s Setting up liblcms2-2:ppc64el (2.16-2) ... 183s Setting up 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pybuild-autopkgtest 234s autopkgtest [18:27:25]: test pybuild-autopkgtest: [----------------------- 234s pybuild-autopkgtest 234s I: pybuild base:311: cd /tmp/autopkgtest.8U9zVy/autopkgtest_tmp/build; python3.12 -m pytest --pyargs skbio 238s ============================= test session starts ============================== 238s platform linux -- Python 3.12.7, pytest-8.3.3, pluggy-1.5.0 238s rootdir: /tmp/autopkgtest.8U9zVy/autopkgtest_tmp/build 238s configfile: pyproject.toml 238s plugins: typeguard-4.4.1 238s collected 2793 items 238s 239s alignment/tests/test_pairwise.py ......................... [ 0%] 239s alignment/tests/test_path.py ................. [ 1%] 239s alignment/tests/test_ssw.py ........................... [ 2%] 239s alignment/tests/test_tabular_msa.py .................................... [ 3%] 239s ........................................................................ [ 6%] 240s ........................................................................ [ 8%] 242s ........................................................................ [ 11%] 242s ........................................................................ [ 14%] 242s ........................................................................ [ 16%] 242s ..... [ 16%] 242s diversity/alpha/tests/test_ace.py .. [ 16%] 245s diversity/alpha/tests/test_base.py ............................... [ 18%] 245s diversity/alpha/tests/test_chao1.py ... [ 18%] 245s diversity/alpha/tests/test_gini.py .... [ 18%] 251s diversity/alpha/tests/test_lladser.py ............ 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[ 85%] 315s stats/ordination/tests/test_ordination_results.py ............. [ 85%] 315s stats/ordination/tests/test_principal_coordinate_analysis.py ........... [ 86%] 315s . [ 86%] 316s stats/ordination/tests/test_redundancy_analysis.py .... [ 86%] 316s stats/ordination/tests/test_util.py .......... [ 86%] 316s stats/tests/test_composition.py ........................................ [ 87%] 334s .......................................... [ 89%] 335s stats/tests/test_gradient.py .......................... [ 90%] 335s stats/tests/test_misc.py ... [ 90%] 338s stats/tests/test_power.py ........................................... [ 92%] 339s stats/tests/test_subsample.py ............ [ 92%] 339s table/tests/test_base.py . [ 92%] 339s tests/test_base.py ..... [ 92%] 339s tests/test_workflow.py ................. [ 93%] 339s tree/tests/test_majority_rule.py ...... [ 93%] 340s tree/tests/test_nj.py ............................ [ 94%] 340s tree/tests/test_tree.py ................................................ [ 96%] 341s ........................................................ [ 98%] 341s util/tests/test_decorator.py ........ [ 98%] 341s util/tests/test_misc.py .................... [ 99%] 341s util/tests/test_plotting.py ...... [ 99%] 341s util/tests/test_testing.py ............... [100%] 341s 341s =============================== warnings summary =============================== 341s alignment/tests/test_pairwise.py::PairwiseAlignmentTests::test_compute_score_and_traceback_matrices 341s /usr/lib/python3/dist-packages/skbio/util/_warning.py:56: DeprecationWarning: make_identity_substitution_matrix is deprecated as of 0.4.0. It has been replaced by the SubstitutionMatrix class. Additional details at https://github.com/scikit-bio/scikit-bio/pull/1913. 341s warn( 341s 341s alignment/tests/test_ssw.py::TestAlignStripedSmithWaterman::test_invalid_type 341s /usr/lib/python3/dist-packages/skbio/util/_warning.py:56: DeprecationWarning: local_pairwise_align_ssw is deprecated as of 0.5.8. It will be removed in favor of more general purpose and performant aligners. Additional details at https://github.com/scikit-bio/scikit-bio/issues/1814. 341s warn( 341s 341s alignment/tests/test_tabular_msa.py::TestGapFrequencies::test_no_positions_relative 341s /usr/lib/python3/dist-packages/skbio/alignment/_tabular_msa.py:1648: RuntimeWarning: invalid value encountered in divide 341s gap_freqs /= length 341s 341s diversity/tests/test_block.py::ParallelBetaDiversity::test_block_beta_diversity 341s /usr/lib/python3/dist-packages/skbio/util/_warning.py:56: DeprecationWarning: partial_beta_diversity is deprecated as of 0.5.0. The return type is unstable. Developer caution is advised. The resulting DistanceMatrix object will include zeros when distance has not been calculated, and therefore can be misleading. 341s warn( 341s 341s metadata/tests/test_io.py: 10 warnings 341s /usr/lib/python3/dist-packages/skbio/metadata/io.py:411: FutureWarning: Downcasting behavior in `replace` is deprecated and will be removed in a future version. To retain the old behavior, explicitly call `result.infer_objects(copy=False)`. To opt-in to the future behavior, set `pd.set_option('future.no_silent_downcasting', True)` 341s series = series.replace("", np.nan) 341s 341s metadata/tests/test_io.py::TestSave::test_numeric_metadata_column_insdc_missing 341s metadata/tests/test_metadata_column.py::TestToSeries::test_encode_missing_true 341s metadata/tests/test_metadata_column.py::TestToDataframe::test_encode_missing_true 341s /usr/lib/python3/dist-packages/skbio/metadata/_metadata.py:1102: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise an error in a future version of pandas. Value '['missing']' has dtype incompatible with float64, please explicitly cast to a compatible dtype first. 341s series[missing.index] = missing 341s 341s metadata/tests/test_missing.py::TestISNDC::test_roundtrip_all_missing_object 341s metadata/tests/test_missing.py::TestOmitted::test_roundtrip_all_missing_object 341s /usr/lib/python3/dist-packages/skbio/metadata/tests/test_missing.py:53: FutureWarning: Mismatched null-like values nan and None found. In a future version, pandas equality-testing functions (e.g. assert_frame_equal) will consider these not-matching and raise. 341s pdt.assert_series_equal(missing, series.astype(object)) 341s 341s metadata/tests/test_missing.py::TestOmitted::test_roundtrip_bool 341s metadata/tests/test_missing.py::TestOmitted::test_roundtrip_string 341s /usr/lib/python3/dist-packages/skbio/metadata/tests/test_missing.py:31: FutureWarning: Mismatched null-like values nan and None found. In a future version, pandas equality-testing functions (e.g. assert_frame_equal) will consider these not-matching and raise. 341s pdt.assert_series_equal(missing, series[1:].astype(object)) 341s 341s sequence/tests/test_grammared_sequence.py::TestGrammaredSequence::test_has_nondegenerates 341s sequence/tests/test_grammared_sequence.py::TestGrammaredSequence::test_has_nondegenerates 341s sequence/tests/test_grammared_sequence.py::TestGrammaredSequence::test_has_nondegenerates 341s sequence/tests/test_grammared_sequence.py::TestGrammaredSequence::test_has_nondegenerates 341s sequence/tests/test_grammared_sequence.py::TestGrammaredSequence::test_has_nondegenerates 341s sequence/tests/test_grammared_sequence.py::TestGrammaredSequence::test_has_nondegenerates 341s /usr/lib/python3/dist-packages/skbio/sequence/_grammared_sequence.py:639: DeprecationWarning: has_nondegenerates is deprecated as of 0.5.0 341s warn("has_nondegenerates is deprecated as of 0.5.0", DeprecationWarning) 341s 341s sequence/tests/test_grammared_sequence.py::TestGrammaredSequence::test_nondegenerate_chars 341s sequence/tests/test_grammared_sequence.py::TestGrammaredSequence::test_nondegenerate_chars 341s sequence/tests/test_grammared_sequence.py::TestGrammaredSequence::test_nondegenerate_chars 341s sequence/tests/test_nucleotide_sequences.py::TestNucleotideSequence::test_nondegenerate_chars 341s sequence/tests/test_nucleotide_sequences.py::TestNucleotideSequence::test_nondegenerate_chars 341s sequence/tests/test_nucleotide_sequences.py::TestNucleotideSequence::test_nondegenerate_chars 341s sequence/tests/test_nucleotide_sequences.py::TestNucleotideSequence::test_nondegenerate_chars 341s sequence/tests/test_protein.py::TestProtein::test_nondegenerate_chars 341s sequence/tests/test_protein.py::TestProtein::test_nondegenerate_chars 341s /usr/lib/python3/dist-packages/skbio/sequence/_grammared_sequence.py:313: DeprecationWarning: nondegenerate_chars is deprecated as of 0.5.0 341s warn("nondegenerate_chars is deprecated as of 0.5.0", DeprecationWarning) 341s 341s sequence/tests/test_grammared_sequence.py::TestGrammaredSequence::test_nondegenerates 341s sequence/tests/test_grammared_sequence.py::TestGrammaredSequence::test_nondegenerates 341s sequence/tests/test_grammared_sequence.py::TestGrammaredSequence::test_nondegenerates 341s sequence/tests/test_grammared_sequence.py::TestGrammaredSequence::test_nondegenerates 341s sequence/tests/test_grammared_sequence.py::TestGrammaredSequence::test_nondegenerates 341s sequence/tests/test_grammared_sequence.py::TestGrammaredSequence::test_nondegenerates 341s sequence/tests/test_grammared_sequence.py::TestGrammaredSequence::test_nondegenerates 341s /usr/lib/python3/dist-packages/skbio/sequence/_grammared_sequence.py:572: DeprecationWarning: nondenengerates is deprecated as of 0.5.0. 341s warn("nondenengerates is deprecated as of 0.5.0.", DeprecationWarning) 341s 341s sequence/tests/test_sequence.py::TestSequence::test_frequencies_empty_sequence 341s /usr/lib/python3/dist-packages/skbio/sequence/_sequence.py:1824: RuntimeWarning: invalid value encountered in divide 341s obs_counts = obs_counts / len(self) 341s 341s stats/distance/tests/test_mantel.py::MantelTests::test_no_variation_pearson 341s /usr/lib/python3/dist-packages/skbio/stats/distance/_mantel.py:364: ConstantInputWarning: All values in data are exactly equal; results may not be reliable. 341s warnings.warn(ConstantInputWarning()) 341s 341s stats/distance/tests/test_mantel.py::MantelTests::test_no_variation_spearman 341s /usr/lib/python3/dist-packages/skbio/stats/distance/_mantel.py:483: ConstantInputWarning: All values in data are exactly equal; results may not be reliable. 341s warnings.warn(ConstantInputWarning()) 341s 341s stats/distance/tests/test_permdisp.py::testPERMDISP::test_call_via_series 341s stats/distance/tests/test_permdisp.py::testPERMDISP::test_call_via_series 341s /usr/lib/python3/dist-packages/skbio/stats/ordination/_principal_coordinate_analysis.py:146: RuntimeWarning: The result contains negative eigenvalues. Please compare their magnitude with the magnitude of some of the largest positive eigenvalues. If the negative ones are smaller, it's probably safe to ignore them, but if they are large in magnitude, the results won't be useful. See the Notes section for more details. The smallest eigenvalue is -0.006573677549550482 and the largest is 0.17668321589384078. 341s warn( 341s 341s stats/distance/tests/test_permdisp.py::testPERMDISP::test_centroids_eq_groups 341s stats/distance/tests/test_permdisp.py::testPERMDISP::test_no_permuations 341s /usr/lib/python3/dist-packages/skbio/stats/ordination/_principal_coordinate_analysis.py:146: RuntimeWarning: The result contains negative eigenvalues. Please compare their magnitude with the magnitude of some of the largest positive eigenvalues. If the negative ones are smaller, it's probably safe to ignore them, but if they are large in magnitude, the results won't be useful. See the Notes section for more details. The smallest eigenvalue is -13.541846544269617 and the largest is 16.587201374785895. 341s warn( 341s 341s stats/distance/tests/test_permdisp.py::testPERMDISP::test_centroids_mixedgroups 341s stats/distance/tests/test_permdisp.py::testPERMDISP::test_centroids_uneq_groups 341s /usr/lib/python3/dist-packages/skbio/stats/ordination/_principal_coordinate_analysis.py:146: RuntimeWarning: The result contains negative eigenvalues. Please compare their magnitude with the magnitude of some of the largest positive eigenvalues. If the negative ones are smaller, it's probably safe to ignore them, but if they are large in magnitude, the results won't be useful. See the Notes section for more details. The smallest eigenvalue is -15.629533932395201 and the largest is 20.903154277938906. 341s warn( 341s 341s stats/distance/tests/test_permdisp.py::testPERMDISP::test_centroids_null 341s /usr/lib/python3/dist-packages/skbio/stats/ordination/_principal_coordinate_analysis.py:190: RuntimeWarning: invalid value encountered in divide 341s proportion_explained = eigvals / sum_eigenvalues 341s 341s stats/distance/tests/test_permdisp.py::testPERMDISP::test_centroids_null 341s /usr/lib/python3/dist-packages/scipy/stats/_axis_nan_policy.py:563: ConstantInputWarning: Each of the input arrays is constant; the F statistic is not defined or infinite 341s res = hypotest_fun_out(*samples, axis=axis, **kwds) 341s 341s stats/distance/tests/test_permdisp.py::testPERMDISP::test_confirm_betadispr_results 341s stats/distance/tests/test_permdisp.py::testPERMDISP::test_confirm_betadispr_results 341s /usr/lib/python3/dist-packages/skbio/stats/ordination/_principal_coordinate_analysis.py:146: RuntimeWarning: The result contains negative eigenvalues. Please compare their magnitude with the magnitude of some of the largest positive eigenvalues. If the negative ones are smaller, it's probably safe to ignore them, but if they are large in magnitude, the results won't be useful. See the Notes section for more details. The smallest eigenvalue is -0.007758325147780548 and the largest is 2.7077929489469246. 341s warn( 341s 341s stats/ordination/tests/test_redundancy_analysis.py::TestRDAErrors::test_shape 341s /usr/lib/python3.12/unittest/case.py:690: DeprecationWarning: It is deprecated to return a value that is not None from a test case (>) 341s return self.run(*args, **kwds) 341s 341s stats/tests/test_composition.py::CompositionTests::test_multiplicative_replacement 341s /usr/lib/python3/dist-packages/skbio/util/_warning.py:60: UserWarning: multiplicative_replacement is deprecated as of 0.6.0. 341s warn(f"{func.__name__} is deprecated as of {ver}.") 341s 341s stats/tests/test_composition.py::AncomTests::test_ancom_alternative_test 341s /usr/lib/python3/dist-packages/scipy/stats/_axis_nan_policy.py:531: RuntimeWarning: Precision loss occurred in moment calculation due to catastrophic cancellation. This occurs when the data are nearly identical. Results may be unreliable. 341s res = hypotest_fun_out(*samples, **kwds) 341s 341s stats/tests/test_composition.py::AncomTests::test_ancom_multiple_comparisons_deprecated 341s /usr/lib/python3/dist-packages/skbio/util/_warning.py:60: UserWarning: ancom is deprecated as of 0.6.0. 341s warn(f"{func.__name__} is deprecated as of {ver}.") 341s 341s stats/tests/test_composition.py::AncomTests::test_ancom_no_signal 341s /usr/lib/python3/dist-packages/scipy/stats/_axis_nan_policy.py:531: ConstantInputWarning: Each of the input arrays is constant; the F statistic is not defined or infinite 341s res = hypotest_fun_out(*samples, **kwds) 341s 341s stats/tests/test_composition.py::VLRTests::test_pairwise_vlr 341s /usr/lib/python3/dist-packages/skbio/stats/composition.py:947: RuntimeWarning: divide by zero encountered in log 341s X_log = np.log(mat) 341s 341s stats/tests/test_composition.py::VLRTests::test_pairwise_vlr 341s /usr/lib/python3/dist-packages/numpy/lib/function_base.py:2742: RuntimeWarning: invalid value encountered in subtract 341s X -= avg[:, None] 341s 341s stats/tests/test_composition.py::VLRTests::test_vlr 341s /usr/lib/python3/dist-packages/skbio/stats/composition.py:831: RuntimeWarning: divide by zero encountered in log 341s x = np.log(x) 341s 341s stats/tests/test_composition.py::VLRTests::test_vlr 341s /usr/lib/python3/dist-packages/numpy/core/_methods.py:173: RuntimeWarning: invalid value encountered in subtract 341s x = asanyarray(arr - arrmean) 341s 341s stats/tests/test_gradient.py::GradientTests::test_weight_by_vector 341s /usr/lib/python3/dist-packages/skbio/stats/gradient.py:167: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise an error in a future version of pandas. Value '6.357142857142857' has dtype incompatible with int64, please explicitly cast to a compatible dtype first. 341s trajectories.loc[idx] = ( 341s 341s tree/tests/test_tree.py::TreeTests::test_root_at 341s /usr/lib/python3/dist-packages/skbio/tree/_tree.py:1327: FutureWarning: The default behavior of `root_at` is subject to change in 0.7.0. The new default behavior can be achieved by specifying `reset=True, branch_attrs=[], root_name=None`. 341s warn( 341s 341s tree/tests/test_tree.py::TreeTests::test_root_at 341s /usr/lib/python3/dist-packages/skbio/tree/_tree.py:776: FutureWarning: The default behavior of `unrooted_copy` is subject to change in 0.7.0. The new default behavior can be achieved by specifying `branch_attrs={"length", "support"}, root_name=None`. 341s warn( 341s 341s tree/tests/test_tree.py::TreeTests::test_root_at_midpoint 341s /usr/lib/python3/dist-packages/skbio/tree/_tree.py:1472: FutureWarning: The default behavior of `root_at_midpoint` is subject to change in 0.7.0. The new default behavior can be achieved by specifying `reset=True, branch_attrs=[], root_name=None`. 341s warn( 341s 341s tree/tests/test_tree.py::TreeTests::test_unrooted_deepcopy 341s /usr/lib/python3/dist-packages/skbio/util/_warning.py:56: DeprecationWarning: unrooted_deepcopy is deprecated as of 0.6.2. Use unrooted_copy instead. 341s warn( 341s 341s -- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html 341s ========== 2763 passed, 30 skipped, 70 warnings in 105.48s (0:01:45) =========== 342s autopkgtest [18:29:13]: test pybuild-autopkgtest: -----------------------] 343s pybuild-autopkgtest PASS 343s autopkgtest [18:29:13]: test pybuild-autopkgtest: - - - - - - - - - - results - - - - - - - - - - 343s autopkgtest [18:29:14]: @@@@@@@@@@@@@@@@@@@@ summary 343s pybuild-autopkgtest PASS 354s nova [W] Using flock in prodstack6-ppc64el 354s Creating nova instance adt-plucky-ppc64el-python-skbio-20241118-182331-juju-7f2275-prod-proposed-migration-environment-15-aa2dfd9b-2857-48c7-812e-6234bef3aefd from image adt/ubuntu-plucky-ppc64el-server-20241118.img (UUID 6881a927-1825-44a5-92f2-5f029c9bf803)...