0s autopkgtest [23:39:02]: starting date and time: 2024-11-13 23:39:02+0000 0s autopkgtest [23:39:02]: git checkout: 6f3be7a8 Fix armhf LXD image generation for plucky 0s autopkgtest [23:39:02]: host juju-7f2275-prod-proposed-migration-environment-15; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.0mvfhjek/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:python3-defaults,src:python3-stdlib-extensions --apt-upgrade python-pymbar --timeout-short=300 --timeout-copy=20000 --timeout-test=20000 --timeout-build=20000 '--env=ADT_TEST_TRIGGERS=python3-defaults/3.12.7-1 python3-stdlib-extensions/3.12.7-1' -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest-big-ppc64el --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-15@bos03-ppc64el-30.secgroup --name adt-plucky-ppc64el-python-pymbar-20241113-232249-juju-7f2275-prod-proposed-migration-environment-15-e6f11fd0-9ba9-4687-93b7-cad103d26a10 --image adt/ubuntu-plucky-ppc64el-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-15 --net-id=net_prod-proposed-migration-ppc64el -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,keyserver.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/ 85s autopkgtest [23:40:27]: testbed dpkg architecture: ppc64el 86s autopkgtest [23:40:28]: testbed apt version: 2.9.8 86s autopkgtest [23:40:28]: @@@@@@@@@@@@@@@@@@@@ test bed setup 86s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease [73.9 kB] 87s Get:2 http://ftpmaster.internal/ubuntu plucky-proposed/universe Sources [971 kB] 87s Get:3 http://ftpmaster.internal/ubuntu plucky-proposed/restricted Sources [7016 B] 87s Get:4 http://ftpmaster.internal/ubuntu plucky-proposed/main Sources [101 kB] 87s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse Sources [17.2 kB] 87s Get:6 http://ftpmaster.internal/ubuntu plucky-proposed/main ppc64el Packages [110 kB] 87s Get:7 http://ftpmaster.internal/ubuntu plucky-proposed/universe ppc64el Packages [692 kB] 87s Get:8 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse ppc64el Packages [20.8 kB] 87s Fetched 1993 kB in 1s (2218 kB/s) 87s Reading package lists... 90s Reading package lists... 90s Building dependency tree... 90s Reading state information... 90s Calculating upgrade... 90s The following NEW packages will be installed: 90s python3.13-gdbm 90s The following packages will be upgraded: 90s bpfcc-tools bpftrace libbpfcc libgnutls30t64 libjson-glib-1.0-0 90s libjson-glib-1.0-common libnewt0.52 libpython3-stdlib libutempter0 python3 90s python3-bpfcc python3-gdbm python3-minimal python3-newt whiptail 90s 15 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. 90s Need to get 4700 kB of archives. 90s After this operation, 215 kB of additional disk space will be used. 90s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed/main ppc64el python3-minimal ppc64el 3.12.7-1 [27.4 kB] 90s Get:2 http://ftpmaster.internal/ubuntu plucky-proposed/main ppc64el python3 ppc64el 3.12.7-1 [24.0 kB] 90s Get:3 http://ftpmaster.internal/ubuntu plucky-proposed/main ppc64el libpython3-stdlib ppc64el 3.12.7-1 [10.0 kB] 90s Get:4 http://ftpmaster.internal/ubuntu plucky/main ppc64el libgnutls30t64 ppc64el 3.8.8-2ubuntu1 [1072 kB] 91s Get:5 http://ftpmaster.internal/ubuntu plucky/main ppc64el python3-newt ppc64el 0.52.24-2ubuntu4 [21.8 kB] 91s Get:6 http://ftpmaster.internal/ubuntu plucky/main ppc64el libnewt0.52 ppc64el 0.52.24-2ubuntu4 [62.1 kB] 91s Get:7 http://ftpmaster.internal/ubuntu plucky/main ppc64el whiptail ppc64el 0.52.24-2ubuntu4 [19.5 kB] 91s Get:8 http://ftpmaster.internal/ubuntu plucky/main ppc64el python3.13-gdbm ppc64el 3.13.0-2 [31.5 kB] 91s Get:9 http://ftpmaster.internal/ubuntu plucky-proposed/main ppc64el python3-gdbm ppc64el 3.12.7-1 [8640 B] 91s Get:10 http://ftpmaster.internal/ubuntu plucky/main ppc64el libbpfcc ppc64el 0.30.0+ds-1ubuntu5 [696 kB] 91s Get:11 http://ftpmaster.internal/ubuntu plucky/main ppc64el python3-bpfcc all 0.30.0+ds-1ubuntu5 [40.4 kB] 91s Get:12 http://ftpmaster.internal/ubuntu plucky/main ppc64el bpfcc-tools all 0.30.0+ds-1ubuntu5 [697 kB] 91s Get:13 http://ftpmaster.internal/ubuntu plucky/main ppc64el bpftrace ppc64el 0.21.2-2ubuntu2 [1898 kB] 91s Get:14 http://ftpmaster.internal/ubuntu plucky/main ppc64el libjson-glib-1.0-common all 1.10.0+ds-3 [5586 B] 91s Get:15 http://ftpmaster.internal/ubuntu plucky/main ppc64el libjson-glib-1.0-0 ppc64el 1.10.0+ds-3 [76.0 kB] 91s Get:16 http://ftpmaster.internal/ubuntu plucky/main ppc64el libutempter0 ppc64el 1.2.1-4 [9850 B] 91s Fetched 4700 kB in 1s (5162 kB/s) 92s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 73767 files and directories currently installed.) 92s Preparing to unpack .../python3-minimal_3.12.7-1_ppc64el.deb ... 92s Unpacking python3-minimal (3.12.7-1) over (3.12.6-0ubuntu1) ... 92s Setting up python3-minimal (3.12.7-1) ... 92s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 73767 files and directories currently installed.) 92s Preparing to unpack .../python3_3.12.7-1_ppc64el.deb ... 92s Unpacking python3 (3.12.7-1) over (3.12.6-0ubuntu1) ... 92s Preparing to unpack .../libpython3-stdlib_3.12.7-1_ppc64el.deb ... 92s Unpacking libpython3-stdlib:ppc64el (3.12.7-1) over (3.12.6-0ubuntu1) ... 92s Preparing to unpack .../libgnutls30t64_3.8.8-2ubuntu1_ppc64el.deb ... 92s Unpacking libgnutls30t64:ppc64el (3.8.8-2ubuntu1) over (3.8.6-2ubuntu1) ... 92s Setting up libgnutls30t64:ppc64el (3.8.8-2ubuntu1) ... 92s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 73767 files and directories currently installed.) 92s Preparing to unpack .../00-python3-newt_0.52.24-2ubuntu4_ppc64el.deb ... 92s Unpacking python3-newt:ppc64el (0.52.24-2ubuntu4) over (0.52.24-2ubuntu3) ... 92s Preparing to unpack .../01-libnewt0.52_0.52.24-2ubuntu4_ppc64el.deb ... 92s Unpacking libnewt0.52:ppc64el (0.52.24-2ubuntu4) over (0.52.24-2ubuntu3) ... 92s Preparing to unpack .../02-whiptail_0.52.24-2ubuntu4_ppc64el.deb ... 92s Unpacking whiptail (0.52.24-2ubuntu4) over (0.52.24-2ubuntu3) ... 92s Selecting previously unselected package python3.13-gdbm. 92s Preparing to unpack .../03-python3.13-gdbm_3.13.0-2_ppc64el.deb ... 92s Unpacking python3.13-gdbm (3.13.0-2) ... 92s Preparing to unpack .../04-python3-gdbm_3.12.7-1_ppc64el.deb ... 92s Unpacking python3-gdbm:ppc64el (3.12.7-1) over (3.12.6-1ubuntu1) ... 92s Preparing to unpack .../05-libbpfcc_0.30.0+ds-1ubuntu5_ppc64el.deb ... 92s Unpacking libbpfcc:ppc64el (0.30.0+ds-1ubuntu5) over (0.30.0+ds-1ubuntu4) ... 92s Preparing to unpack .../06-python3-bpfcc_0.30.0+ds-1ubuntu5_all.deb ... 92s Unpacking python3-bpfcc (0.30.0+ds-1ubuntu5) over (0.30.0+ds-1ubuntu4) ... 92s Preparing to unpack .../07-bpfcc-tools_0.30.0+ds-1ubuntu5_all.deb ... 92s Unpacking bpfcc-tools (0.30.0+ds-1ubuntu5) over (0.30.0+ds-1ubuntu4) ... 92s Preparing to unpack .../08-bpftrace_0.21.2-2ubuntu2_ppc64el.deb ... 92s Unpacking bpftrace (0.21.2-2ubuntu2) over (0.21.2-2) ... 93s Preparing to unpack .../09-libjson-glib-1.0-common_1.10.0+ds-3_all.deb ... 93s Unpacking libjson-glib-1.0-common (1.10.0+ds-3) over (1.10.0+ds-2) ... 93s Preparing to unpack .../10-libjson-glib-1.0-0_1.10.0+ds-3_ppc64el.deb ... 93s Unpacking libjson-glib-1.0-0:ppc64el (1.10.0+ds-3) over (1.10.0+ds-2) ... 93s Preparing to unpack .../11-libutempter0_1.2.1-4_ppc64el.deb ... 93s Unpacking libutempter0:ppc64el (1.2.1-4) over (1.2.1-3build1) ... 93s Setting up libnewt0.52:ppc64el (0.52.24-2ubuntu4) ... 93s Setting up libutempter0:ppc64el (1.2.1-4) ... 93s Setting up whiptail (0.52.24-2ubuntu4) ... 93s Setting up libjson-glib-1.0-common (1.10.0+ds-3) ... 93s Setting up libbpfcc:ppc64el (0.30.0+ds-1ubuntu5) ... 93s Setting up python3.13-gdbm (3.13.0-2) ... 93s Setting up libpython3-stdlib:ppc64el (3.12.7-1) ... 93s Setting up bpftrace (0.21.2-2ubuntu2) ... 93s Setting up python3 (3.12.7-1) ... 93s Setting up python3-newt:ppc64el (0.52.24-2ubuntu4) ... 93s Setting up libjson-glib-1.0-0:ppc64el (1.10.0+ds-3) ... 93s Setting up python3-bpfcc (0.30.0+ds-1ubuntu5) ... 93s Setting up python3-gdbm:ppc64el (3.12.7-1) ... 93s Setting up bpfcc-tools (0.30.0+ds-1ubuntu5) ... 93s Processing triggers for man-db (2.12.1-3) ... 94s Processing triggers for libc-bin (2.40-1ubuntu3) ... 95s Reading package lists... 95s Building dependency tree... 95s Reading state information... 95s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 95s Hit:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease 95s Hit:2 http://ftpmaster.internal/ubuntu plucky InRelease 95s Hit:3 http://ftpmaster.internal/ubuntu plucky-updates InRelease 96s Hit:4 http://ftpmaster.internal/ubuntu plucky-security InRelease 97s Reading package lists... 97s Reading package lists... 97s Building dependency tree... 97s Reading state information... 97s Calculating upgrade... 97s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 97s Reading package lists... 97s Building dependency tree... 97s Reading state information... 98s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 100s autopkgtest [23:40:42]: testbed running kernel: Linux 6.11.0-8-generic #8-Ubuntu SMP Mon Sep 16 13:49:23 UTC 2024 100s autopkgtest [23:40:42]: @@@@@@@@@@@@@@@@@@@@ apt-source python-pymbar 103s Get:1 http://ftpmaster.internal/ubuntu plucky/universe python-pymbar 4.0.3-2 (dsc) [2234 B] 103s Get:2 http://ftpmaster.internal/ubuntu plucky/universe python-pymbar 4.0.3-2 (tar) [17.2 MB] 103s Get:3 http://ftpmaster.internal/ubuntu plucky/universe python-pymbar 4.0.3-2 (diff) [3444 B] 103s gpgv: Signature made Sat Jun 29 17:20:42 2024 UTC 103s gpgv: using RSA key 8F6DE104377F3B11E741748731F3144544A1741A 103s gpgv: issuer "tchet@debian.org" 103s gpgv: Can't check signature: No public key 103s dpkg-source: warning: cannot verify inline signature for ./python-pymbar_4.0.3-2.dsc: no acceptable signature found 104s autopkgtest [23:40:46]: testing package python-pymbar version 4.0.3-2 104s autopkgtest [23:40:46]: build not needed 106s autopkgtest [23:40:48]: test command1: preparing testbed 107s Reading package lists... 107s Building dependency tree... 107s Reading state information... 108s Starting pkgProblemResolver with broken count: 0 108s Starting 2 pkgProblemResolver with broken count: 0 108s Done 108s The following additional packages will be installed: 108s libblas3 libgfortran5 liblapack3 liblbfgsb0 python3-decorator 108s python3-iniconfig python3-numexpr python3-numpy python3-packaging 108s python3-pluggy python3-pymbar python3-pytest python3-scipy 108s Suggested packages: 108s gcc gfortran python-numpy-doc python3-dev python-scipy-doc 108s Recommended packages: 108s g++ | c++-compiler python3-pil 108s The following NEW packages will be installed: 108s autopkgtest-satdep libblas3 libgfortran5 liblapack3 liblbfgsb0 108s python3-decorator python3-iniconfig python3-numexpr python3-numpy 108s python3-packaging python3-pluggy python3-pymbar python3-pytest python3-scipy 108s 0 upgraded, 14 newly installed, 0 to remove and 0 not upgraded. 108s Need to get 26.9 MB/26.9 MB of archives. 108s After this operation, 117 MB of additional disk space will be used. 108s Get:1 /tmp/autopkgtest.Qizb57/1-autopkgtest-satdep.deb autopkgtest-satdep ppc64el 0 [716 B] 108s Get:2 http://ftpmaster.internal/ubuntu plucky/main ppc64el libblas3 ppc64el 3.12.0-3build2 [222 kB] 108s Get:3 http://ftpmaster.internal/ubuntu plucky/main ppc64el libgfortran5 ppc64el 14.2.0-8ubuntu1 [571 kB] 108s Get:4 http://ftpmaster.internal/ubuntu plucky/main ppc64el liblapack3 ppc64el 3.12.0-3build2 [2806 kB] 109s Get:5 http://ftpmaster.internal/ubuntu plucky/universe ppc64el liblbfgsb0 ppc64el 3.0+dfsg.4-1build1 [33.0 kB] 109s Get:6 http://ftpmaster.internal/ubuntu plucky/main ppc64el python3-decorator all 5.1.1-5 [10.1 kB] 109s Get:7 http://ftpmaster.internal/ubuntu plucky/universe ppc64el python3-iniconfig all 1.1.1-2 [6024 B] 109s Get:8 http://ftpmaster.internal/ubuntu plucky/main ppc64el python3-numpy ppc64el 1:1.26.4+ds-11build1 [4434 kB] 109s Get:9 http://ftpmaster.internal/ubuntu plucky/main ppc64el python3-packaging all 24.1-1 [41.4 kB] 109s Get:10 http://ftpmaster.internal/ubuntu plucky/universe ppc64el python3-numexpr ppc64el 2.10.1-2 [133 kB] 109s Get:11 http://ftpmaster.internal/ubuntu plucky/universe ppc64el python3-pluggy all 1.5.0-1 [21.0 kB] 109s Get:12 http://ftpmaster.internal/ubuntu plucky/universe ppc64el python3-scipy ppc64el 1.13.1-5 [18.3 MB] 110s Get:13 http://ftpmaster.internal/ubuntu plucky/universe ppc64el python3-pymbar all 4.0.3-2 [80.7 kB] 110s Get:14 http://ftpmaster.internal/ubuntu plucky/universe ppc64el python3-pytest all 8.3.3-1 [251 kB] 110s Fetched 26.9 MB in 2s (14.2 MB/s) 110s Selecting previously unselected package libblas3:ppc64el. 110s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 73775 files and directories currently installed.) 110s Preparing to unpack .../00-libblas3_3.12.0-3build2_ppc64el.deb ... 110s Unpacking libblas3:ppc64el (3.12.0-3build2) ... 110s Selecting previously unselected package libgfortran5:ppc64el. 110s Preparing to unpack .../01-libgfortran5_14.2.0-8ubuntu1_ppc64el.deb ... 110s Unpacking libgfortran5:ppc64el (14.2.0-8ubuntu1) ... 110s Selecting previously unselected package liblapack3:ppc64el. 110s Preparing to unpack .../02-liblapack3_3.12.0-3build2_ppc64el.deb ... 110s Unpacking liblapack3:ppc64el (3.12.0-3build2) ... 110s Selecting previously unselected package liblbfgsb0:ppc64el. 110s Preparing to unpack .../03-liblbfgsb0_3.0+dfsg.4-1build1_ppc64el.deb ... 110s Unpacking liblbfgsb0:ppc64el (3.0+dfsg.4-1build1) ... 110s Selecting previously unselected package python3-decorator. 110s Preparing to unpack .../04-python3-decorator_5.1.1-5_all.deb ... 110s Unpacking python3-decorator (5.1.1-5) ... 110s Selecting previously unselected package python3-iniconfig. 110s Preparing to unpack .../05-python3-iniconfig_1.1.1-2_all.deb ... 110s Unpacking python3-iniconfig (1.1.1-2) ... 110s Selecting previously unselected package python3-numpy. 110s Preparing to unpack .../06-python3-numpy_1%3a1.26.4+ds-11build1_ppc64el.deb ... 110s Unpacking python3-numpy (1:1.26.4+ds-11build1) ... 110s Selecting previously unselected package python3-packaging. 110s Preparing to unpack .../07-python3-packaging_24.1-1_all.deb ... 110s Unpacking python3-packaging (24.1-1) ... 110s Selecting previously unselected package python3-numexpr. 110s Preparing to unpack .../08-python3-numexpr_2.10.1-2_ppc64el.deb ... 110s Unpacking python3-numexpr (2.10.1-2) ... 110s Selecting previously unselected package python3-pluggy. 110s Preparing to unpack .../09-python3-pluggy_1.5.0-1_all.deb ... 110s Unpacking python3-pluggy (1.5.0-1) ... 110s Selecting previously unselected package python3-scipy. 110s Preparing to unpack .../10-python3-scipy_1.13.1-5_ppc64el.deb ... 110s Unpacking python3-scipy (1.13.1-5) ... 111s Selecting previously unselected package python3-pymbar. 111s Preparing to unpack .../11-python3-pymbar_4.0.3-2_all.deb ... 111s Unpacking python3-pymbar (4.0.3-2) ... 111s Selecting previously unselected package python3-pytest. 111s Preparing to unpack .../12-python3-pytest_8.3.3-1_all.deb ... 111s Unpacking python3-pytest (8.3.3-1) ... 111s Selecting previously unselected package autopkgtest-satdep. 111s Preparing to unpack .../13-1-autopkgtest-satdep.deb ... 111s Unpacking autopkgtest-satdep (0) ... 111s Setting up python3-iniconfig (1.1.1-2) ... 111s Setting up python3-decorator (5.1.1-5) ... 111s Setting up libblas3:ppc64el (3.12.0-3build2) ... 111s update-alternatives: using /usr/lib/powerpc64le-linux-gnu/blas/libblas.so.3 to provide /usr/lib/powerpc64le-linux-gnu/libblas.so.3 (libblas.so.3-powerpc64le-linux-gnu) in auto mode 111s Setting up python3-packaging (24.1-1) ... 111s Setting up libgfortran5:ppc64el (14.2.0-8ubuntu1) ... 111s Setting up python3-pluggy (1.5.0-1) ... 111s Setting up liblapack3:ppc64el (3.12.0-3build2) ... 111s update-alternatives: using /usr/lib/powerpc64le-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/powerpc64le-linux-gnu/liblapack.so.3 (liblapack.so.3-powerpc64le-linux-gnu) in auto mode 111s Setting up python3-pytest (8.3.3-1) ... 112s Setting up python3-numpy (1:1.26.4+ds-11build1) ... 114s Setting up liblbfgsb0:ppc64el (3.0+dfsg.4-1build1) ... 114s Setting up python3-scipy (1.13.1-5) ... 118s Setting up python3-numexpr (2.10.1-2) ... 118s Setting up python3-pymbar (4.0.3-2) ... 118s Setting up autopkgtest-satdep (0) ... 118s Processing triggers for man-db (2.12.1-3) ... 119s Processing triggers for libc-bin (2.40-1ubuntu3) ... 121s (Reading database ... 76361 files and directories currently installed.) 121s Removing autopkgtest-satdep (0) ... 122s autopkgtest [23:41:04]: test command1: rm pymbar/*.py && pytest-3 122s autopkgtest [23:41:04]: test command1: [----------------------- 123s ============================= test session starts ============================== 123s platform linux -- Python 3.12.7, pytest-8.3.3, pluggy-1.5.0 123s rootdir: /tmp/autopkgtest.Qizb57/build.rDX/src 123s configfile: setup.cfg 123s plugins: typeguard-4.4.1 123s collected 150 items 123s 123s pymbar/tests/test_bar.py ..... [ 3%] 123s pymbar/tests/test_exp.py .... [ 6%] 131s pymbar/tests/test_fes.py ..xxsssssssss.....xxssssssss [ 24%] 135s pymbar/tests/test_mbar.py ...x..........x...............x..........xxxx. [ 55%] 135s ..x..................x [ 70%] 146s pymbar/tests/test_mbar_solvers.py ................ [ 80%] 153s pymbar/tests/test_timeseries.py ..ss.ss.. [ 86%] 154s pymbar/tests/test_utils.py ....xx..xx..xx..xx.. [100%] 154s 154s =============================== warnings summary =============================== 154s pymbar/tests/test_mbar_solvers.py:24 154s /tmp/autopkgtest.Qizb57/build.rDX/src/pymbar/tests/test_mbar_solvers.py:24: PytestUnknownMarkWarning: Unknown pytest.mark.flaky - is this a typo? You can register custom marks to avoid this warning - for details, see https://docs.pytest.org/en/stable/how-to/mark.html 154s @pytest.mark.flaky(max_runs=2) # Uses flaky plugin for pytest 154s 154s pymbar/tests/test_mbar_solvers.py:67 154s /tmp/autopkgtest.Qizb57/build.rDX/src/pymbar/tests/test_mbar_solvers.py:67: PytestUnknownMarkWarning: Unknown pytest.mark.flaky - is this a typo? You can register custom marks to avoid this warning - for details, see https://docs.pytest.org/en/stable/how-to/mark.html 154s pytest.param("TNC", marks=pytest.mark.flaky(max_runs=2)), # This one is flaky 154s 154s pymbar/tests/test_fes.py: 108 warnings 154s /usr/lib/python3/dist-packages/pymbar/fes.py:2246: DeprecationWarning: Conversion of an array with ndim > 0 to a scalar is deprecated, and will error in future. Ensure you extract a single element from your array before performing this operation. (Deprecated NumPy 1.25.) 154s g[i - 1] = N * np.dot(w_n, db_c[i](x_n)) 154s 154s -- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html 154s ========== 108 passed, 21 skipped, 21 xfailed, 110 warnings in 31.19s ========== 154s autopkgtest [23:41:36]: test command1: -----------------------] 154s autopkgtest [23:41:36]: test command1: - - - - - - - - - - results - - - - - - - - - - 154s command1 PASS 155s autopkgtest [23:41:37]: test autodep8-python3: preparing testbed 271s autopkgtest [23:43:33]: testbed dpkg architecture: ppc64el 271s autopkgtest [23:43:33]: testbed apt version: 2.9.8 271s autopkgtest [23:43:33]: @@@@@@@@@@@@@@@@@@@@ test bed setup 272s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease [73.9 kB] 272s Get:2 http://ftpmaster.internal/ubuntu plucky-proposed/restricted Sources [7016 B] 272s Get:3 http://ftpmaster.internal/ubuntu plucky-proposed/main Sources [101 kB] 273s Get:4 http://ftpmaster.internal/ubuntu plucky-proposed/universe Sources [971 kB] 273s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse Sources [17.2 kB] 273s Get:6 http://ftpmaster.internal/ubuntu plucky-proposed/main ppc64el Packages [110 kB] 273s Get:7 http://ftpmaster.internal/ubuntu plucky-proposed/universe ppc64el Packages [692 kB] 273s Get:8 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse ppc64el Packages [20.8 kB] 273s Fetched 1993 kB in 1s (1869 kB/s) 273s Reading package lists... 275s Reading package lists... 275s Building dependency tree... 275s Reading state information... 276s Calculating upgrade... 276s The following NEW packages will be installed: 276s python3.13-gdbm 276s The following packages will be upgraded: 276s bpfcc-tools bpftrace libbpfcc libgnutls30t64 libjson-glib-1.0-0 276s libjson-glib-1.0-common libnewt0.52 libpython3-stdlib libutempter0 python3 276s python3-bpfcc python3-gdbm python3-minimal python3-newt whiptail 276s 15 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. 276s Need to get 4700 kB of archives. 276s After this operation, 215 kB of additional disk space will be used. 276s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed/main ppc64el python3-minimal ppc64el 3.12.7-1 [27.4 kB] 276s Get:2 http://ftpmaster.internal/ubuntu plucky-proposed/main ppc64el python3 ppc64el 3.12.7-1 [24.0 kB] 276s Get:3 http://ftpmaster.internal/ubuntu plucky-proposed/main ppc64el libpython3-stdlib ppc64el 3.12.7-1 [10.0 kB] 276s Get:4 http://ftpmaster.internal/ubuntu plucky/main ppc64el libgnutls30t64 ppc64el 3.8.8-2ubuntu1 [1072 kB] 276s Get:5 http://ftpmaster.internal/ubuntu plucky/main ppc64el python3-newt ppc64el 0.52.24-2ubuntu4 [21.8 kB] 276s Get:6 http://ftpmaster.internal/ubuntu plucky/main ppc64el libnewt0.52 ppc64el 0.52.24-2ubuntu4 [62.1 kB] 276s Get:7 http://ftpmaster.internal/ubuntu plucky/main ppc64el whiptail ppc64el 0.52.24-2ubuntu4 [19.5 kB] 276s Get:8 http://ftpmaster.internal/ubuntu plucky/main ppc64el python3.13-gdbm ppc64el 3.13.0-2 [31.5 kB] 276s Get:9 http://ftpmaster.internal/ubuntu plucky-proposed/main ppc64el python3-gdbm ppc64el 3.12.7-1 [8640 B] 276s Get:10 http://ftpmaster.internal/ubuntu plucky/main ppc64el libbpfcc ppc64el 0.30.0+ds-1ubuntu5 [696 kB] 276s Get:11 http://ftpmaster.internal/ubuntu plucky/main ppc64el python3-bpfcc all 0.30.0+ds-1ubuntu5 [40.4 kB] 276s Get:12 http://ftpmaster.internal/ubuntu plucky/main ppc64el bpfcc-tools all 0.30.0+ds-1ubuntu5 [697 kB] 277s Get:13 http://ftpmaster.internal/ubuntu plucky/main ppc64el bpftrace ppc64el 0.21.2-2ubuntu2 [1898 kB] 277s Get:14 http://ftpmaster.internal/ubuntu plucky/main ppc64el libjson-glib-1.0-common all 1.10.0+ds-3 [5586 B] 277s Get:15 http://ftpmaster.internal/ubuntu plucky/main ppc64el libjson-glib-1.0-0 ppc64el 1.10.0+ds-3 [76.0 kB] 277s Get:16 http://ftpmaster.internal/ubuntu plucky/main ppc64el libutempter0 ppc64el 1.2.1-4 [9850 B] 277s Fetched 4700 kB in 1s (6469 kB/s) 277s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 73767 files and directories currently installed.) 277s Preparing to unpack .../python3-minimal_3.12.7-1_ppc64el.deb ... 277s Unpacking python3-minimal (3.12.7-1) over (3.12.6-0ubuntu1) ... 277s Setting up python3-minimal (3.12.7-1) ... 277s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 73767 files and directories currently installed.) 277s Preparing to unpack .../python3_3.12.7-1_ppc64el.deb ... 277s Unpacking python3 (3.12.7-1) over (3.12.6-0ubuntu1) ... 277s Preparing to unpack .../libpython3-stdlib_3.12.7-1_ppc64el.deb ... 277s Unpacking libpython3-stdlib:ppc64el (3.12.7-1) over (3.12.6-0ubuntu1) ... 277s Preparing to unpack .../libgnutls30t64_3.8.8-2ubuntu1_ppc64el.deb ... 277s Unpacking libgnutls30t64:ppc64el (3.8.8-2ubuntu1) over (3.8.6-2ubuntu1) ... 278s Setting up libgnutls30t64:ppc64el (3.8.8-2ubuntu1) ... 278s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 73767 files and directories currently installed.) 278s Preparing to unpack .../00-python3-newt_0.52.24-2ubuntu4_ppc64el.deb ... 278s Unpacking python3-newt:ppc64el (0.52.24-2ubuntu4) over (0.52.24-2ubuntu3) ... 278s Preparing to unpack .../01-libnewt0.52_0.52.24-2ubuntu4_ppc64el.deb ... 278s Unpacking libnewt0.52:ppc64el (0.52.24-2ubuntu4) over (0.52.24-2ubuntu3) ... 278s Preparing to unpack .../02-whiptail_0.52.24-2ubuntu4_ppc64el.deb ... 278s Unpacking whiptail (0.52.24-2ubuntu4) over (0.52.24-2ubuntu3) ... 278s Selecting previously unselected package python3.13-gdbm. 278s Preparing to unpack .../03-python3.13-gdbm_3.13.0-2_ppc64el.deb ... 278s Unpacking python3.13-gdbm (3.13.0-2) ... 278s Preparing to unpack .../04-python3-gdbm_3.12.7-1_ppc64el.deb ... 278s Unpacking python3-gdbm:ppc64el (3.12.7-1) over (3.12.6-1ubuntu1) ... 278s Preparing to unpack .../05-libbpfcc_0.30.0+ds-1ubuntu5_ppc64el.deb ... 278s Unpacking libbpfcc:ppc64el (0.30.0+ds-1ubuntu5) over (0.30.0+ds-1ubuntu4) ... 278s Preparing to unpack .../06-python3-bpfcc_0.30.0+ds-1ubuntu5_all.deb ... 278s Unpacking python3-bpfcc (0.30.0+ds-1ubuntu5) over (0.30.0+ds-1ubuntu4) ... 278s Preparing to unpack .../07-bpfcc-tools_0.30.0+ds-1ubuntu5_all.deb ... 278s Unpacking bpfcc-tools (0.30.0+ds-1ubuntu5) over (0.30.0+ds-1ubuntu4) ... 278s Preparing to unpack .../08-bpftrace_0.21.2-2ubuntu2_ppc64el.deb ... 278s Unpacking bpftrace (0.21.2-2ubuntu2) over (0.21.2-2) ... 278s Preparing to unpack .../09-libjson-glib-1.0-common_1.10.0+ds-3_all.deb ... 278s Unpacking libjson-glib-1.0-common (1.10.0+ds-3) over (1.10.0+ds-2) ... 278s Preparing to unpack .../10-libjson-glib-1.0-0_1.10.0+ds-3_ppc64el.deb ... 278s Unpacking libjson-glib-1.0-0:ppc64el (1.10.0+ds-3) over (1.10.0+ds-2) ... 278s Preparing to unpack .../11-libutempter0_1.2.1-4_ppc64el.deb ... 278s Unpacking libutempter0:ppc64el (1.2.1-4) over (1.2.1-3build1) ... 278s Setting up libnewt0.52:ppc64el (0.52.24-2ubuntu4) ... 278s Setting up libutempter0:ppc64el (1.2.1-4) ... 278s Setting up whiptail (0.52.24-2ubuntu4) ... 278s Setting up libjson-glib-1.0-common (1.10.0+ds-3) ... 278s Setting up libbpfcc:ppc64el (0.30.0+ds-1ubuntu5) ... 278s Setting up python3.13-gdbm (3.13.0-2) ... 278s Setting up libpython3-stdlib:ppc64el (3.12.7-1) ... 278s Setting up bpftrace (0.21.2-2ubuntu2) ... 278s Setting up python3 (3.12.7-1) ... 278s Setting up python3-newt:ppc64el (0.52.24-2ubuntu4) ... 278s Setting up libjson-glib-1.0-0:ppc64el (1.10.0+ds-3) ... 278s Setting up python3-bpfcc (0.30.0+ds-1ubuntu5) ... 279s Setting up python3-gdbm:ppc64el (3.12.7-1) ... 279s Setting up bpfcc-tools (0.30.0+ds-1ubuntu5) ... 279s Processing triggers for man-db (2.12.1-3) ... 280s Processing triggers for libc-bin (2.40-1ubuntu3) ... 280s Reading package lists... 280s Building dependency tree... 280s Reading state information... 280s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 281s Hit:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease 281s Hit:2 http://ftpmaster.internal/ubuntu plucky InRelease 281s Hit:3 http://ftpmaster.internal/ubuntu plucky-updates InRelease 281s Hit:4 http://ftpmaster.internal/ubuntu plucky-security InRelease 282s Reading package lists... 282s Reading package lists... 282s Building dependency tree... 282s Reading state information... 282s Calculating upgrade... 282s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 282s Reading package lists... 283s Building dependency tree... 283s Reading state information... 283s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 286s Reading package lists... 287s Building dependency tree... 287s Reading state information... 287s Starting pkgProblemResolver with broken count: 0 287s Starting 2 pkgProblemResolver with broken count: 0 287s Done 287s The following additional packages will be installed: 287s libblas3 libgfortran5 liblapack3 liblbfgsb0 libpython3.13-minimal 287s libpython3.13-stdlib python3-all python3-decorator python3-numexpr 287s python3-numpy python3-packaging python3-pymbar python3-scipy python3.13 287s python3.13-minimal 287s Suggested packages: 287s gcc gfortran python-numpy-doc python3-dev python3-pytest python-scipy-doc 287s python3.13-venv python3.13-doc binfmt-support 287s Recommended packages: 287s g++ | c++-compiler python3-pil 287s The following NEW packages will be installed: 287s autopkgtest-satdep libblas3 libgfortran5 liblapack3 liblbfgsb0 287s libpython3.13-minimal libpython3.13-stdlib python3-all python3-decorator 287s python3-numexpr python3-numpy python3-packaging python3-pymbar python3-scipy 287s python3.13 python3.13-minimal 287s 0 upgraded, 16 newly installed, 0 to remove and 0 not upgraded. 287s Need to get 32.7 MB/32.7 MB of archives. 287s After this operation, 142 MB of additional disk space will be used. 287s Get:1 /tmp/autopkgtest.Qizb57/2-autopkgtest-satdep.deb autopkgtest-satdep ppc64el 0 [716 B] 287s Get:2 http://ftpmaster.internal/ubuntu plucky/main ppc64el libpython3.13-minimal ppc64el 3.13.0-2 [881 kB] 288s Get:3 http://ftpmaster.internal/ubuntu plucky/main ppc64el python3.13-minimal ppc64el 3.13.0-2 [2302 kB] 288s Get:4 http://ftpmaster.internal/ubuntu plucky/main ppc64el libblas3 ppc64el 3.12.0-3build2 [222 kB] 288s Get:5 http://ftpmaster.internal/ubuntu plucky/main ppc64el libgfortran5 ppc64el 14.2.0-8ubuntu1 [571 kB] 288s Get:6 http://ftpmaster.internal/ubuntu plucky/main ppc64el liblapack3 ppc64el 3.12.0-3build2 [2806 kB] 288s Get:7 http://ftpmaster.internal/ubuntu plucky/universe ppc64el liblbfgsb0 ppc64el 3.0+dfsg.4-1build1 [33.0 kB] 288s Get:8 http://ftpmaster.internal/ubuntu plucky/main ppc64el libpython3.13-stdlib ppc64el 3.13.0-2 [2148 kB] 288s Get:9 http://ftpmaster.internal/ubuntu plucky/main ppc64el python3.13 ppc64el 3.13.0-2 [719 kB] 288s Get:10 http://ftpmaster.internal/ubuntu plucky-proposed/main ppc64el python3-all ppc64el 3.12.7-1 [888 B] 288s Get:11 http://ftpmaster.internal/ubuntu plucky/main ppc64el python3-decorator all 5.1.1-5 [10.1 kB] 288s Get:12 http://ftpmaster.internal/ubuntu plucky/main ppc64el python3-numpy ppc64el 1:1.26.4+ds-11build1 [4434 kB] 288s Get:13 http://ftpmaster.internal/ubuntu plucky/main ppc64el python3-packaging all 24.1-1 [41.4 kB] 288s Get:14 http://ftpmaster.internal/ubuntu plucky/universe ppc64el python3-numexpr ppc64el 2.10.1-2 [133 kB] 288s Get:15 http://ftpmaster.internal/ubuntu plucky/universe ppc64el python3-scipy ppc64el 1.13.1-5 [18.3 MB] 289s Get:16 http://ftpmaster.internal/ubuntu plucky/universe ppc64el python3-pymbar all 4.0.3-2 [80.7 kB] 289s Fetched 32.7 MB in 2s (15.6 MB/s) 289s Selecting previously unselected package libpython3.13-minimal:ppc64el. 289s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 73775 files and directories currently installed.) 290s Preparing to unpack .../00-libpython3.13-minimal_3.13.0-2_ppc64el.deb ... 290s Unpacking libpython3.13-minimal:ppc64el (3.13.0-2) ... 290s Selecting previously unselected package python3.13-minimal. 290s Preparing to unpack .../01-python3.13-minimal_3.13.0-2_ppc64el.deb ... 290s Unpacking python3.13-minimal (3.13.0-2) ... 290s Selecting previously unselected package libblas3:ppc64el. 290s Preparing to unpack .../02-libblas3_3.12.0-3build2_ppc64el.deb ... 290s Unpacking libblas3:ppc64el (3.12.0-3build2) ... 290s Selecting previously unselected package libgfortran5:ppc64el. 290s Preparing to unpack .../03-libgfortran5_14.2.0-8ubuntu1_ppc64el.deb ... 290s Unpacking libgfortran5:ppc64el (14.2.0-8ubuntu1) ... 290s Selecting previously unselected package liblapack3:ppc64el. 290s Preparing to unpack .../04-liblapack3_3.12.0-3build2_ppc64el.deb ... 290s Unpacking liblapack3:ppc64el (3.12.0-3build2) ... 290s Selecting previously unselected package liblbfgsb0:ppc64el. 290s Preparing to unpack .../05-liblbfgsb0_3.0+dfsg.4-1build1_ppc64el.deb ... 290s Unpacking liblbfgsb0:ppc64el (3.0+dfsg.4-1build1) ... 290s Selecting previously unselected package libpython3.13-stdlib:ppc64el. 290s Preparing to unpack .../06-libpython3.13-stdlib_3.13.0-2_ppc64el.deb ... 290s Unpacking libpython3.13-stdlib:ppc64el (3.13.0-2) ... 290s Selecting previously unselected package python3.13. 290s Preparing to unpack .../07-python3.13_3.13.0-2_ppc64el.deb ... 290s Unpacking python3.13 (3.13.0-2) ... 290s Selecting previously unselected package python3-all. 290s Preparing to unpack .../08-python3-all_3.12.7-1_ppc64el.deb ... 290s Unpacking python3-all (3.12.7-1) ... 290s Selecting previously unselected package python3-decorator. 290s Preparing to unpack .../09-python3-decorator_5.1.1-5_all.deb ... 290s Unpacking python3-decorator (5.1.1-5) ... 290s Selecting previously unselected package python3-numpy. 290s Preparing to unpack .../10-python3-numpy_1%3a1.26.4+ds-11build1_ppc64el.deb ... 290s Unpacking python3-numpy (1:1.26.4+ds-11build1) ... 290s Selecting previously unselected package python3-packaging. 290s Preparing to unpack .../11-python3-packaging_24.1-1_all.deb ... 290s Unpacking python3-packaging (24.1-1) ... 290s Selecting previously unselected package python3-numexpr. 290s Preparing to unpack .../12-python3-numexpr_2.10.1-2_ppc64el.deb ... 290s Unpacking python3-numexpr (2.10.1-2) ... 290s Selecting previously unselected package python3-scipy. 290s Preparing to unpack .../13-python3-scipy_1.13.1-5_ppc64el.deb ... 290s Unpacking python3-scipy (1.13.1-5) ... 291s Selecting previously unselected package python3-pymbar. 291s Preparing to unpack .../14-python3-pymbar_4.0.3-2_all.deb ... 291s Unpacking python3-pymbar (4.0.3-2) ... 291s Selecting previously unselected package autopkgtest-satdep. 291s Preparing to unpack .../15-2-autopkgtest-satdep.deb ... 291s Unpacking autopkgtest-satdep (0) ... 291s Setting up libpython3.13-minimal:ppc64el (3.13.0-2) ... 291s Setting up python3-decorator (5.1.1-5) ... 291s Setting up libblas3:ppc64el (3.12.0-3build2) ... 291s update-alternatives: using /usr/lib/powerpc64le-linux-gnu/blas/libblas.so.3 to provide /usr/lib/powerpc64le-linux-gnu/libblas.so.3 (libblas.so.3-powerpc64le-linux-gnu) in auto mode 291s Setting up python3-packaging (24.1-1) ... 291s Setting up libgfortran5:ppc64el (14.2.0-8ubuntu1) ... 291s Setting up python3.13-minimal (3.13.0-2) ... 292s Setting up libpython3.13-stdlib:ppc64el (3.13.0-2) ... 292s Setting up liblapack3:ppc64el (3.12.0-3build2) ... 292s update-alternatives: using /usr/lib/powerpc64le-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/powerpc64le-linux-gnu/liblapack.so.3 (liblapack.so.3-powerpc64le-linux-gnu) in auto mode 292s Setting up python3.13 (3.13.0-2) ... 293s Setting up python3-all (3.12.7-1) ... 293s Setting up python3-numpy (1:1.26.4+ds-11build1) ... 297s Setting up liblbfgsb0:ppc64el (3.0+dfsg.4-1build1) ... 297s Setting up python3-scipy (1.13.1-5) ... 305s Setting up python3-numexpr (2.10.1-2) ... 305s Setting up python3-pymbar (4.0.3-2) ... 305s Setting up autopkgtest-satdep (0) ... 305s Processing triggers for systemd (256.5-2ubuntu4) ... 305s Processing triggers for man-db (2.12.1-3) ... 306s Processing triggers for libc-bin (2.40-1ubuntu3) ... 308s (Reading database ... 76955 files and directories currently installed.) 308s Removing autopkgtest-satdep (0) ... 316s autopkgtest [23:44:18]: test autodep8-python3: set -e ; for py in $(py3versions -r 2>/dev/null) ; do cd "$AUTOPKGTEST_TMP" ; echo "Testing with $py:" ; $py -c "import pymbar; print(pymbar)" ; done 316s autopkgtest [23:44:18]: test autodep8-python3: [----------------------- 316s Testing with python3.13: 316s Traceback (most recent call last): 316s File "/usr/lib/python3/dist-packages/numpy/core/__init__.py", line 24, in 316s from . import multiarray 316s File "/usr/lib/python3/dist-packages/numpy/core/multiarray.py", line 10, in 316s from . import overrides 316s File "/usr/lib/python3/dist-packages/numpy/core/overrides.py", line 8, in 316s from numpy.core._multiarray_umath import ( 316s add_docstring, _get_implementing_args, _ArrayFunctionDispatcher) 316s ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 316s 316s During handling of the above exception, another exception occurred: 316s 316s Traceback (most recent call last): 316s File "/usr/lib/python3/dist-packages/numpy/__init__.py", line 130, in 316s from numpy.__config__ import show as show_config 316s File "/usr/lib/python3/dist-packages/numpy/__config__.py", line 4, in 316s from numpy.core._multiarray_umath import ( 316s ...<3 lines>... 316s ) 316s File "/usr/lib/python3/dist-packages/numpy/core/__init__.py", line 50, in 316s raise ImportError(msg) 316s ImportError: 316s 316s IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 316s 316s Importing the numpy C-extensions failed. This error can happen for 316s many reasons, often due to issues with your setup or how NumPy was 316s installed. 316s 316s We have compiled some common reasons and troubleshooting tips at: 316s 316s https://numpy.org/devdocs/user/troubleshooting-importerror.html 316s 316s Please note and check the following: 316s 316s * The Python version is: Python3.13 from "/usr/bin/python3.13" 316s * The NumPy version is: "1.26.4" 316s 316s and make sure that they are the versions you expect. 316s Please carefully study the documentation linked above for further help. 316s 316s Original error was: No module named 'numpy.core._multiarray_umath' 316s 316s 316s The above exception was the direct cause of the following exception: 316s 316s Traceback (most recent call last): 316s File "", line 1, in 316s import pymbar; print(pymbar) 316s ^^^^^^^^^^^^^ 316s File "/usr/lib/python3/dist-packages/pymbar/__init__.py", line 31, in 316s from . import timeseries, testsystems, confidenceintervals 316s File "/usr/lib/python3/dist-packages/pymbar/timeseries.py", line 60, in 316s import numpy as np 316s File "/usr/lib/python3/dist-packages/numpy/__init__.py", line 135, in 316s raise ImportError(msg) from e 316s ImportError: Error importing numpy: you should not try to import numpy from 316s its source directory; please exit the numpy source tree, and relaunch 316s your python interpreter from there. 316s autopkgtest [23:44:18]: test autodep8-python3: -----------------------] 317s autodep8-python3 FAIL non-zero exit status 1 317s autopkgtest [23:44:19]: test autodep8-python3: - - - - - - - - - - results - - - - - - - - - - 317s autopkgtest [23:44:19]: @@@@@@@@@@@@@@@@@@@@ summary 317s command1 PASS 317s autodep8-python3 FAIL non-zero exit status 1 322s nova [W] Using flock in prodstack6-ppc64el 322s Creating nova instance adt-plucky-ppc64el-python-pymbar-20241113-232249-juju-7f2275-prod-proposed-migration-environment-15-e6f11fd0-9ba9-4687-93b7-cad103d26a10 from image adt/ubuntu-plucky-ppc64el-server-20241113.img (UUID 0c5715b6-5cca-4485-b8bf-b85dfd917a5f)... 322s nova [W] Using flock in prodstack6-ppc64el 322s Creating nova instance adt-plucky-ppc64el-python-pymbar-20241113-232249-juju-7f2275-prod-proposed-migration-environment-15-e6f11fd0-9ba9-4687-93b7-cad103d26a10 from image adt/ubuntu-plucky-ppc64el-server-20241113.img (UUID 0c5715b6-5cca-4485-b8bf-b85dfd917a5f)...