0s autopkgtest [07:42:59]: starting date and time: 2024-11-03 07:42:59+0000 0s autopkgtest [07:42:59]: git checkout: 6f3be7a8 Fix armhf LXD image generation for plucky 0s autopkgtest [07:42:59]: host juju-7f2275-prod-proposed-migration-environment-15; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.ezuc5eig/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:htslib --apt-upgrade python-pyfaidx --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=htslib/1.20+ds-2 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest-ppc64el --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-15@bos03-ppc64el-5.secgroup --name adt-plucky-ppc64el-python-pyfaidx-20241103-074259-juju-7f2275-prod-proposed-migration-environment-15-363367f0-0826-4bd1-ab68-313cc0606336 --image adt/ubuntu-plucky-ppc64el-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-15 --net-id=net_prod-proposed-migration-ppc64el -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,keyserver.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/ 115s autopkgtest [07:44:54]: testbed dpkg architecture: ppc64el 115s autopkgtest [07:44:54]: testbed apt version: 2.9.8 115s autopkgtest [07:44:54]: @@@@@@@@@@@@@@@@@@@@ test bed setup 117s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease [73.9 kB] 117s Get:2 http://ftpmaster.internal/ubuntu plucky-proposed/main Sources [177 kB] 118s Get:3 http://ftpmaster.internal/ubuntu plucky-proposed/restricted Sources [7016 B] 118s Get:4 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse Sources [31.2 kB] 118s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/universe Sources [2268 kB] 126s Get:6 http://ftpmaster.internal/ubuntu plucky-proposed/main ppc64el Packages [213 kB] 127s Get:7 http://ftpmaster.internal/ubuntu plucky-proposed/universe ppc64el Packages [1576 kB] 136s Get:8 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse ppc64el Packages [37.8 kB] 137s Fetched 4384 kB in 20s (217 kB/s) 137s Reading package lists... 139s Reading package lists... 140s Building dependency tree... 140s Reading state information... 140s Calculating upgrade... 140s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 140s Reading package lists... 140s Building dependency tree... 140s Reading state information... 140s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 141s Hit:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease 141s Hit:2 http://ftpmaster.internal/ubuntu plucky InRelease 141s Hit:3 http://ftpmaster.internal/ubuntu plucky-updates InRelease 141s Hit:4 http://ftpmaster.internal/ubuntu plucky-security InRelease 142s Reading package lists... 142s Reading package lists... 142s Building dependency tree... 142s Reading state information... 142s Calculating upgrade... 142s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 143s Reading package lists... 143s Building dependency tree... 143s Reading state information... 143s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 146s autopkgtest [07:45:25]: testbed running kernel: Linux 6.11.0-8-generic #8-Ubuntu SMP Mon Sep 16 13:49:23 UTC 2024 147s autopkgtest [07:45:26]: @@@@@@@@@@@@@@@@@@@@ apt-source python-pyfaidx 149s Get:1 http://ftpmaster.internal/ubuntu plucky/universe python-pyfaidx 0.8.1.2-1 (dsc) [2578 B] 149s Get:2 http://ftpmaster.internal/ubuntu plucky/universe python-pyfaidx 0.8.1.2-1 (tar) [96.5 kB] 149s Get:3 http://ftpmaster.internal/ubuntu plucky/universe python-pyfaidx 0.8.1.2-1 (diff) [7004 B] 150s gpgv: Signature made Sun Aug 11 17:37:37 2024 UTC 150s gpgv: using RSA key 8F91B227C7D6F2B1948C8236793CF67E8F0D11DA 150s gpgv: issuer "emollier@debian.org" 150s gpgv: Can't check signature: No public key 150s dpkg-source: warning: cannot verify inline signature for ./python-pyfaidx_0.8.1.2-1.dsc: no acceptable signature found 150s autopkgtest [07:45:29]: testing package python-pyfaidx version 0.8.1.2-1 150s autopkgtest [07:45:29]: build not needed 151s autopkgtest [07:45:30]: test run-unit-test: preparing testbed 153s Reading package lists... 153s Building dependency tree... 153s Reading state information... 153s Starting pkgProblemResolver with broken count: 0 153s Starting 2 pkgProblemResolver with broken count: 0 153s Done 154s The following additional packages will be installed: 154s fontconfig-config fonts-dejavu-core fonts-dejavu-mono fonts-urw-base35 154s libblas3 libcairo2 libdeflate0 libfontconfig1 libfontenc1 libgfortran5 154s libgomp1 libgraphite2-3 libharfbuzz0b libhtscodecs2 libimagequant0 libjbig0 154s libjpeg-turbo8 libjpeg8 liblapack3 liblcms2-2 liblerc4 libopenjp2-7 154s libpixman-1-0 libraqm0 libsharpyuv0 libtiff6 libwebp7 libwebpdemux2 154s libwebpmux3 libxcb-render0 libxcb-shm0 libxrender1 python-pyfaidx-examples 154s python3-all python3-biopython python3-cairo python3-freetype 154s python3-importlib-metadata python3-iniconfig python3-numpy python3-packaging 154s python3-pil python3-pluggy python3-pyfaidx python3-pytest python3-reportlab 154s python3-rlpycairo sgml-base tabix w3c-sgml-lib x11-common xfonts-encodings 154s xfonts-utils xml-core 154s Suggested packages: 154s fonts-freefont-otf | fonts-freefont-ttf fonts-texgyre liblcms2-utils 154s python3-tk bwa clustalo clustalw dialign dssp emboss fasttree mafft muscle3 154s phylip phyml prank probcons python3-mysqldb python3-matplotlib python3-mmtf 154s python3-rdflib python3-psycopg2 python3-scipy raxml samtools t-coffee wise 154s gcc gfortran python-numpy-doc python3-dev python-pil-doc pdf-viewer 154s python3-egenix-mxtexttools python-reportlab-doc rl-accel rl-renderpm 154s sgml-base-doc debhelper 154s Recommended packages: 154s python-biopython-doc ncbi-blast+ python3-olefile fonts-dejavu-extra 154s The following NEW packages will be installed: 154s autopkgtest-satdep fontconfig-config fonts-dejavu-core fonts-dejavu-mono 154s fonts-urw-base35 libblas3 libcairo2 libdeflate0 libfontconfig1 libfontenc1 154s libgfortran5 libgomp1 libgraphite2-3 libharfbuzz0b libhtscodecs2 154s libimagequant0 libjbig0 libjpeg-turbo8 libjpeg8 liblapack3 liblcms2-2 154s liblerc4 libopenjp2-7 libpixman-1-0 libraqm0 libsharpyuv0 libtiff6 libwebp7 154s libwebpdemux2 libwebpmux3 libxcb-render0 libxcb-shm0 libxrender1 154s python-pyfaidx-examples python3-all python3-biopython python3-cairo 154s python3-freetype python3-importlib-metadata python3-iniconfig python3-numpy 154s python3-packaging python3-pil python3-pluggy python3-pyfaidx python3-pytest 154s python3-reportlab python3-rlpycairo sgml-base tabix w3c-sgml-lib x11-common 154s xfonts-encodings xfonts-utils xml-core 154s 0 upgraded, 55 newly installed, 0 to remove and 0 not upgraded. 154s Need to get 30.2 MB/30.2 MB of archives. 154s After this operation, 97.8 MB of additional disk space will be used. 154s Get:1 /tmp/autopkgtest.SqLnWT/1-autopkgtest-satdep.deb autopkgtest-satdep ppc64el 0 [752 B] 154s Get:2 http://ftpmaster.internal/ubuntu plucky/main ppc64el sgml-base all 1.31 [11.4 kB] 154s Get:3 http://ftpmaster.internal/ubuntu plucky/main ppc64el fonts-dejavu-mono all 2.37-8 [502 kB] 156s Get:4 http://ftpmaster.internal/ubuntu plucky/main ppc64el fonts-dejavu-core all 2.37-8 [835 kB] 162s Get:5 http://ftpmaster.internal/ubuntu plucky/main ppc64el libfontenc1 ppc64el 1:1.1.8-1build1 [15.8 kB] 162s Get:6 http://ftpmaster.internal/ubuntu plucky/main ppc64el x11-common all 1:7.7+23ubuntu3 [21.7 kB] 162s Get:7 http://ftpmaster.internal/ubuntu plucky/main ppc64el xfonts-encodings all 1:1.0.5-0ubuntu2 [578 kB] 165s Get:8 http://ftpmaster.internal/ubuntu plucky/main ppc64el xfonts-utils ppc64el 1:7.7+7 [114 kB] 165s Get:9 http://ftpmaster.internal/ubuntu plucky/main ppc64el fonts-urw-base35 all 20200910-8 [11.0 MB] 216s Get:10 http://ftpmaster.internal/ubuntu plucky/main ppc64el fontconfig-config ppc64el 2.15.0-1.1ubuntu2 [37.4 kB] 216s Get:11 http://ftpmaster.internal/ubuntu plucky/main ppc64el libblas3 ppc64el 3.12.0-3build2 [222 kB] 217s Get:12 http://ftpmaster.internal/ubuntu plucky/main ppc64el libfontconfig1 ppc64el 2.15.0-1.1ubuntu2 [190 kB] 218s Get:13 http://ftpmaster.internal/ubuntu plucky/main ppc64el libpixman-1-0 ppc64el 0.42.2-1build1 [336 kB] 219s Get:14 http://ftpmaster.internal/ubuntu plucky/main ppc64el libxcb-render0 ppc64el 1.17.0-2 [17.2 kB] 219s Get:15 http://ftpmaster.internal/ubuntu plucky/main ppc64el libxcb-shm0 ppc64el 1.17.0-2 [5980 B] 219s Get:16 http://ftpmaster.internal/ubuntu plucky/main ppc64el libxrender1 ppc64el 1:0.9.10-1.1build1 [23.1 kB] 219s Get:17 http://ftpmaster.internal/ubuntu plucky/main ppc64el libcairo2 ppc64el 1.18.2-2 [747 kB] 222s Get:18 http://ftpmaster.internal/ubuntu plucky/main ppc64el libdeflate0 ppc64el 1.21-1 [63.3 kB] 222s Get:19 http://ftpmaster.internal/ubuntu plucky/main ppc64el libgfortran5 ppc64el 14.2.0-7ubuntu1 [571 kB] 226s Get:20 http://ftpmaster.internal/ubuntu plucky/main ppc64el libgomp1 ppc64el 14.2.0-7ubuntu1 [161 kB] 227s Get:21 http://ftpmaster.internal/ubuntu plucky/main ppc64el libgraphite2-3 ppc64el 1.3.14-2ubuntu1 [84.6 kB] 227s Get:22 http://ftpmaster.internal/ubuntu plucky/main ppc64el libharfbuzz0b ppc64el 9.0.0-1 [595 kB] 230s Get:23 http://ftpmaster.internal/ubuntu plucky/universe ppc64el libhtscodecs2 ppc64el 1.6.0-1build1 [110 kB] 231s Get:24 http://ftpmaster.internal/ubuntu plucky/main ppc64el libimagequant0 ppc64el 2.18.0-1build1 [43.2 kB] 231s Get:25 http://ftpmaster.internal/ubuntu plucky/main ppc64el libjpeg-turbo8 ppc64el 2.1.5-2ubuntu2 [219 kB] 232s Get:26 http://ftpmaster.internal/ubuntu plucky/main ppc64el libjpeg8 ppc64el 8c-2ubuntu11 [2148 B] 232s Get:27 http://ftpmaster.internal/ubuntu plucky/main ppc64el liblapack3 ppc64el 3.12.0-3build2 [2806 kB] 249s Get:28 http://ftpmaster.internal/ubuntu plucky/main ppc64el liblcms2-2 ppc64el 2.14-2build1 [233 kB] 251s Get:29 http://ftpmaster.internal/ubuntu plucky/main ppc64el liblerc4 ppc64el 4.0.0+ds-4ubuntu2 [270 kB] 252s Get:30 http://ftpmaster.internal/ubuntu plucky/main ppc64el libraqm0 ppc64el 0.10.1-1build1 [19.4 kB] 252s Get:31 http://ftpmaster.internal/ubuntu plucky/main ppc64el libsharpyuv0 ppc64el 1.4.0-0.1 [22.0 kB] 252s Get:32 http://ftpmaster.internal/ubuntu plucky/main ppc64el libjbig0 ppc64el 2.1-6.1ubuntu2 [35.9 kB] 252s Get:33 http://ftpmaster.internal/ubuntu plucky/main ppc64el libwebp7 ppc64el 1.4.0-0.1 [309 kB] 253s Get:34 http://ftpmaster.internal/ubuntu plucky/main ppc64el libtiff6 ppc64el 4.5.1+git230720-4ubuntu4 [272 kB] 254s Get:35 http://ftpmaster.internal/ubuntu plucky/main ppc64el libwebpdemux2 ppc64el 1.4.0-0.1 [14.1 kB] 254s Get:36 http://ftpmaster.internal/ubuntu plucky/main ppc64el libwebpmux3 ppc64el 1.4.0-0.1 [31.4 kB] 254s Get:37 http://ftpmaster.internal/ubuntu plucky/universe ppc64el python-pyfaidx-examples all 0.8.1.2-1 [38.0 kB] 254s Get:38 http://ftpmaster.internal/ubuntu plucky/main ppc64el python3-all ppc64el 3.12.6-0ubuntu1 [888 B] 254s Get:39 http://ftpmaster.internal/ubuntu plucky/main ppc64el python3-numpy ppc64el 1:1.26.4+ds-11build1 [4434 kB] 270s Get:40 http://ftpmaster.internal/ubuntu plucky/main ppc64el libopenjp2-7 ppc64el 2.5.0-2ubuntu1 [246 kB] 271s Get:41 http://ftpmaster.internal/ubuntu plucky/main ppc64el python3-pil ppc64el 10.4.0-1ubuntu1 [581 kB] 273s Get:42 http://ftpmaster.internal/ubuntu plucky/main ppc64el python3-cairo ppc64el 1.26.1-2 [129 kB] 273s Get:43 http://ftpmaster.internal/ubuntu plucky/universe ppc64el python3-freetype all 2.4.0-2 [81.3 kB] 274s Get:44 http://ftpmaster.internal/ubuntu plucky/universe ppc64el python3-rlpycairo all 0.3.0-3 [9130 B] 274s Get:45 http://ftpmaster.internal/ubuntu plucky/universe ppc64el python3-reportlab all 4.2.2-1 [1130 kB] 278s Get:46 http://ftpmaster.internal/ubuntu plucky/main ppc64el xml-core all 0.19 [20.3 kB] 278s Get:47 http://ftpmaster.internal/ubuntu plucky/universe ppc64el w3c-sgml-lib all 1.3-3 [280 kB] 279s Get:48 http://ftpmaster.internal/ubuntu plucky/universe ppc64el python3-biopython ppc64el 1.83+dfsg1-3 [1696 kB] 286s Get:49 http://ftpmaster.internal/ubuntu plucky/main ppc64el python3-importlib-metadata all 8.2.0-2 [20.3 kB] 286s Get:50 http://ftpmaster.internal/ubuntu plucky/universe ppc64el python3-iniconfig all 1.1.1-2 [6024 B] 286s Get:51 http://ftpmaster.internal/ubuntu plucky/main ppc64el python3-packaging all 24.1-1 [41.4 kB] 286s Get:52 http://ftpmaster.internal/ubuntu plucky/universe ppc64el python3-pluggy all 1.5.0-1 [21.0 kB] 286s Get:53 http://ftpmaster.internal/ubuntu plucky/universe ppc64el python3-pyfaidx all 0.8.1.2-1 [29.6 kB] 287s Get:54 http://ftpmaster.internal/ubuntu plucky/universe ppc64el python3-pytest all 8.3.2-1 [251 kB] 288s Get:55 http://ftpmaster.internal/ubuntu plucky-proposed/universe ppc64el tabix ppc64el 1.20+ds-2 [724 kB] 292s Fetched 30.2 MB in 2min 18s (219 kB/s) 292s Selecting previously unselected package sgml-base. 292s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 73549 files and directories currently installed.) 292s Preparing to unpack .../00-sgml-base_1.31_all.deb ... 292s Unpacking sgml-base (1.31) ... 292s Selecting previously unselected package fonts-dejavu-mono. 292s Preparing to unpack .../01-fonts-dejavu-mono_2.37-8_all.deb ... 292s Unpacking fonts-dejavu-mono (2.37-8) ... 292s Selecting previously unselected package fonts-dejavu-core. 292s Preparing to unpack .../02-fonts-dejavu-core_2.37-8_all.deb ... 292s Unpacking fonts-dejavu-core (2.37-8) ... 292s Selecting previously unselected package libfontenc1:ppc64el. 292s Preparing to unpack .../03-libfontenc1_1%3a1.1.8-1build1_ppc64el.deb ... 292s Unpacking libfontenc1:ppc64el (1:1.1.8-1build1) ... 292s Selecting previously unselected package x11-common. 292s Preparing to unpack .../04-x11-common_1%3a7.7+23ubuntu3_all.deb ... 292s Unpacking x11-common (1:7.7+23ubuntu3) ... 292s Selecting previously unselected package xfonts-encodings. 292s Preparing to unpack .../05-xfonts-encodings_1%3a1.0.5-0ubuntu2_all.deb ... 292s Unpacking xfonts-encodings (1:1.0.5-0ubuntu2) ... 292s Selecting previously unselected package xfonts-utils. 292s Preparing to unpack .../06-xfonts-utils_1%3a7.7+7_ppc64el.deb ... 292s Unpacking xfonts-utils (1:7.7+7) ... 292s Selecting previously unselected package fonts-urw-base35. 292s Preparing to unpack .../07-fonts-urw-base35_20200910-8_all.deb ... 292s Unpacking fonts-urw-base35 (20200910-8) ... 292s Selecting previously unselected package fontconfig-config. 292s Preparing to unpack .../08-fontconfig-config_2.15.0-1.1ubuntu2_ppc64el.deb ... 293s Unpacking fontconfig-config (2.15.0-1.1ubuntu2) ... 293s Selecting previously unselected package libblas3:ppc64el. 293s Preparing to unpack .../09-libblas3_3.12.0-3build2_ppc64el.deb ... 293s Unpacking libblas3:ppc64el (3.12.0-3build2) ... 293s Selecting previously unselected package libfontconfig1:ppc64el. 293s Preparing to unpack .../10-libfontconfig1_2.15.0-1.1ubuntu2_ppc64el.deb ... 293s Unpacking libfontconfig1:ppc64el (2.15.0-1.1ubuntu2) ... 293s Selecting previously unselected package libpixman-1-0:ppc64el. 293s Preparing to unpack .../11-libpixman-1-0_0.42.2-1build1_ppc64el.deb ... 293s Unpacking libpixman-1-0:ppc64el (0.42.2-1build1) ... 293s Selecting previously unselected package libxcb-render0:ppc64el. 293s Preparing to unpack .../12-libxcb-render0_1.17.0-2_ppc64el.deb ... 293s Unpacking libxcb-render0:ppc64el (1.17.0-2) ... 293s Selecting previously unselected package libxcb-shm0:ppc64el. 293s Preparing to unpack .../13-libxcb-shm0_1.17.0-2_ppc64el.deb ... 293s Unpacking libxcb-shm0:ppc64el (1.17.0-2) ... 293s Selecting previously unselected package libxrender1:ppc64el. 293s Preparing to unpack .../14-libxrender1_1%3a0.9.10-1.1build1_ppc64el.deb ... 293s Unpacking libxrender1:ppc64el (1:0.9.10-1.1build1) ... 293s Selecting previously unselected package libcairo2:ppc64el. 293s Preparing to unpack .../15-libcairo2_1.18.2-2_ppc64el.deb ... 293s Unpacking libcairo2:ppc64el (1.18.2-2) ... 293s Selecting previously unselected package libdeflate0:ppc64el. 293s Preparing to unpack .../16-libdeflate0_1.21-1_ppc64el.deb ... 293s Unpacking libdeflate0:ppc64el (1.21-1) ... 293s Selecting previously unselected package libgfortran5:ppc64el. 293s Preparing to unpack .../17-libgfortran5_14.2.0-7ubuntu1_ppc64el.deb ... 293s Unpacking libgfortran5:ppc64el (14.2.0-7ubuntu1) ... 293s Selecting previously unselected package libgomp1:ppc64el. 293s Preparing to unpack .../18-libgomp1_14.2.0-7ubuntu1_ppc64el.deb ... 293s Unpacking libgomp1:ppc64el (14.2.0-7ubuntu1) ... 293s Selecting previously unselected package libgraphite2-3:ppc64el. 293s Preparing to unpack .../19-libgraphite2-3_1.3.14-2ubuntu1_ppc64el.deb ... 293s Unpacking libgraphite2-3:ppc64el (1.3.14-2ubuntu1) ... 293s Selecting previously unselected package libharfbuzz0b:ppc64el. 293s Preparing to unpack .../20-libharfbuzz0b_9.0.0-1_ppc64el.deb ... 293s Unpacking libharfbuzz0b:ppc64el (9.0.0-1) ... 293s Selecting previously unselected package libhtscodecs2:ppc64el. 293s Preparing to unpack .../21-libhtscodecs2_1.6.0-1build1_ppc64el.deb ... 293s Unpacking libhtscodecs2:ppc64el (1.6.0-1build1) ... 293s Selecting previously unselected package libimagequant0:ppc64el. 293s Preparing to unpack .../22-libimagequant0_2.18.0-1build1_ppc64el.deb ... 293s Unpacking libimagequant0:ppc64el (2.18.0-1build1) ... 293s Selecting previously unselected package libjpeg-turbo8:ppc64el. 293s Preparing to unpack .../23-libjpeg-turbo8_2.1.5-2ubuntu2_ppc64el.deb ... 293s Unpacking libjpeg-turbo8:ppc64el (2.1.5-2ubuntu2) ... 293s Selecting previously unselected package libjpeg8:ppc64el. 293s Preparing to unpack .../24-libjpeg8_8c-2ubuntu11_ppc64el.deb ... 293s Unpacking libjpeg8:ppc64el (8c-2ubuntu11) ... 293s Selecting previously unselected package liblapack3:ppc64el. 293s Preparing to unpack .../25-liblapack3_3.12.0-3build2_ppc64el.deb ... 293s Unpacking liblapack3:ppc64el (3.12.0-3build2) ... 293s Selecting previously unselected package liblcms2-2:ppc64el. 293s Preparing to unpack .../26-liblcms2-2_2.14-2build1_ppc64el.deb ... 293s Unpacking liblcms2-2:ppc64el (2.14-2build1) ... 293s Selecting previously unselected package liblerc4:ppc64el. 293s Preparing to unpack .../27-liblerc4_4.0.0+ds-4ubuntu2_ppc64el.deb ... 293s Unpacking liblerc4:ppc64el (4.0.0+ds-4ubuntu2) ... 293s Selecting previously unselected package libraqm0:ppc64el. 293s Preparing to unpack .../28-libraqm0_0.10.1-1build1_ppc64el.deb ... 293s Unpacking libraqm0:ppc64el (0.10.1-1build1) ... 293s Selecting previously unselected package libsharpyuv0:ppc64el. 293s Preparing to unpack .../29-libsharpyuv0_1.4.0-0.1_ppc64el.deb ... 293s Unpacking libsharpyuv0:ppc64el (1.4.0-0.1) ... 293s Selecting previously unselected package libjbig0:ppc64el. 293s Preparing to unpack .../30-libjbig0_2.1-6.1ubuntu2_ppc64el.deb ... 293s Unpacking libjbig0:ppc64el (2.1-6.1ubuntu2) ... 293s Selecting previously unselected package libwebp7:ppc64el. 293s Preparing to unpack .../31-libwebp7_1.4.0-0.1_ppc64el.deb ... 293s Unpacking libwebp7:ppc64el (1.4.0-0.1) ... 293s Selecting previously unselected package libtiff6:ppc64el. 293s Preparing to unpack .../32-libtiff6_4.5.1+git230720-4ubuntu4_ppc64el.deb ... 293s Unpacking libtiff6:ppc64el (4.5.1+git230720-4ubuntu4) ... 293s Selecting previously unselected package libwebpdemux2:ppc64el. 293s Preparing to unpack .../33-libwebpdemux2_1.4.0-0.1_ppc64el.deb ... 293s Unpacking libwebpdemux2:ppc64el (1.4.0-0.1) ... 293s Selecting previously unselected package libwebpmux3:ppc64el. 293s Preparing to unpack .../34-libwebpmux3_1.4.0-0.1_ppc64el.deb ... 293s Unpacking libwebpmux3:ppc64el (1.4.0-0.1) ... 293s Selecting previously unselected package python-pyfaidx-examples. 293s Preparing to unpack .../35-python-pyfaidx-examples_0.8.1.2-1_all.deb ... 293s Unpacking python-pyfaidx-examples (0.8.1.2-1) ... 293s Selecting previously unselected package python3-all. 293s Preparing to unpack .../36-python3-all_3.12.6-0ubuntu1_ppc64el.deb ... 293s Unpacking python3-all (3.12.6-0ubuntu1) ... 293s Selecting previously unselected package python3-numpy. 293s Preparing to unpack .../37-python3-numpy_1%3a1.26.4+ds-11build1_ppc64el.deb ... 293s Unpacking python3-numpy (1:1.26.4+ds-11build1) ... 293s Selecting previously unselected package libopenjp2-7:ppc64el. 293s Preparing to unpack .../38-libopenjp2-7_2.5.0-2ubuntu1_ppc64el.deb ... 293s Unpacking libopenjp2-7:ppc64el (2.5.0-2ubuntu1) ... 293s Selecting previously unselected package python3-pil:ppc64el. 293s Preparing to unpack .../39-python3-pil_10.4.0-1ubuntu1_ppc64el.deb ... 293s Unpacking python3-pil:ppc64el (10.4.0-1ubuntu1) ... 294s Selecting previously unselected package python3-cairo. 294s Preparing to unpack .../40-python3-cairo_1.26.1-2_ppc64el.deb ... 294s Unpacking python3-cairo (1.26.1-2) ... 294s Selecting previously unselected package python3-freetype. 294s Preparing to unpack .../41-python3-freetype_2.4.0-2_all.deb ... 294s Unpacking python3-freetype (2.4.0-2) ... 294s Selecting previously unselected package python3-rlpycairo. 294s Preparing to unpack .../42-python3-rlpycairo_0.3.0-3_all.deb ... 294s Unpacking python3-rlpycairo (0.3.0-3) ... 294s Selecting previously unselected package python3-reportlab. 294s Preparing to unpack .../43-python3-reportlab_4.2.2-1_all.deb ... 294s Unpacking python3-reportlab (4.2.2-1) ... 294s Selecting previously unselected package xml-core. 294s Preparing to unpack .../44-xml-core_0.19_all.deb ... 294s Unpacking xml-core (0.19) ... 294s Selecting previously unselected package w3c-sgml-lib. 294s Preparing to unpack .../45-w3c-sgml-lib_1.3-3_all.deb ... 294s Unpacking w3c-sgml-lib (1.3-3) ... 294s Selecting previously unselected package python3-biopython. 294s Preparing to unpack .../46-python3-biopython_1.83+dfsg1-3_ppc64el.deb ... 294s Unpacking python3-biopython (1.83+dfsg1-3) ... 294s Selecting previously unselected package python3-importlib-metadata. 294s Preparing to unpack .../47-python3-importlib-metadata_8.2.0-2_all.deb ... 294s Unpacking python3-importlib-metadata (8.2.0-2) ... 294s Selecting previously unselected package python3-iniconfig. 294s Preparing to unpack .../48-python3-iniconfig_1.1.1-2_all.deb ... 294s Unpacking python3-iniconfig (1.1.1-2) ... 294s Selecting previously unselected package python3-packaging. 294s Preparing to unpack .../49-python3-packaging_24.1-1_all.deb ... 294s Unpacking python3-packaging (24.1-1) ... 294s Selecting previously unselected package python3-pluggy. 294s Preparing to unpack .../50-python3-pluggy_1.5.0-1_all.deb ... 294s Unpacking python3-pluggy (1.5.0-1) ... 294s Selecting previously unselected package python3-pyfaidx. 294s Preparing to unpack .../51-python3-pyfaidx_0.8.1.2-1_all.deb ... 294s Unpacking python3-pyfaidx (0.8.1.2-1) ... 294s Selecting previously unselected package python3-pytest. 294s Preparing to unpack .../52-python3-pytest_8.3.2-1_all.deb ... 294s Unpacking python3-pytest (8.3.2-1) ... 294s Selecting previously unselected package tabix. 294s Preparing to unpack .../53-tabix_1.20+ds-2_ppc64el.deb ... 294s Unpacking tabix (1.20+ds-2) ... 294s Selecting previously unselected package autopkgtest-satdep. 294s Preparing to unpack .../54-1-autopkgtest-satdep.deb ... 294s Unpacking autopkgtest-satdep (0) ... 294s Setting up libhtscodecs2:ppc64el (1.6.0-1build1) ... 294s Setting up libgraphite2-3:ppc64el (1.3.14-2ubuntu1) ... 294s Setting up liblcms2-2:ppc64el (2.14-2build1) ... 294s Setting up python3-iniconfig (1.1.1-2) ... 294s Setting up libpixman-1-0:ppc64el (0.42.2-1build1) ... 294s Setting up libsharpyuv0:ppc64el (1.4.0-0.1) ... 294s Setting up liblerc4:ppc64el (4.0.0+ds-4ubuntu2) ... 294s Setting up python3-importlib-metadata (8.2.0-2) ... 294s Setting up libxrender1:ppc64el (1:0.9.10-1.1build1) ... 294s Setting up python-pyfaidx-examples (0.8.1.2-1) ... 294s Setting up libxcb-render0:ppc64el (1.17.0-2) ... 294s Setting up x11-common (1:7.7+23ubuntu3) ... 295s Setting up libdeflate0:ppc64el (1.21-1) ... 295s Setting up python3-all (3.12.6-0ubuntu1) ... 295s Setting up libxcb-shm0:ppc64el (1.17.0-2) ... 295s Setting up libgomp1:ppc64el (14.2.0-7ubuntu1) ... 295s Setting up python3-freetype (2.4.0-2) ... 295s Setting up libjbig0:ppc64el (2.1-6.1ubuntu2) ... 295s Setting up libfontenc1:ppc64el (1:1.1.8-1build1) ... 295s Setting up libblas3:ppc64el (3.12.0-3build2) ... 295s update-alternatives: using /usr/lib/powerpc64le-linux-gnu/blas/libblas.so.3 to provide /usr/lib/powerpc64le-linux-gnu/libblas.so.3 (libblas.so.3-powerpc64le-linux-gnu) in auto mode 295s Setting up python3-packaging (24.1-1) ... 295s Setting up xfonts-encodings (1:1.0.5-0ubuntu2) ... 295s Setting up libimagequant0:ppc64el (2.18.0-1build1) ... 295s Setting up fonts-dejavu-mono (2.37-8) ... 295s Setting up fonts-dejavu-core (2.37-8) ... 295s Setting up libjpeg-turbo8:ppc64el (2.1.5-2ubuntu2) ... 295s Setting up libgfortran5:ppc64el (14.2.0-7ubuntu1) ... 295s Setting up python3-pluggy (1.5.0-1) ... 295s Setting up libwebp7:ppc64el (1.4.0-0.1) ... 295s Setting up libopenjp2-7:ppc64el (2.5.0-2ubuntu1) ... 295s Setting up libharfbuzz0b:ppc64el (9.0.0-1) ... 295s Setting up sgml-base (1.31) ... 295s Setting up libwebpmux3:ppc64el (1.4.0-0.1) ... 295s Setting up tabix (1.20+ds-2) ... 295s Setting up libjpeg8:ppc64el (8c-2ubuntu11) ... 295s Setting up python3-pyfaidx (0.8.1.2-1) ... 295s Setting up liblapack3:ppc64el (3.12.0-3build2) ... 295s update-alternatives: using /usr/lib/powerpc64le-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/powerpc64le-linux-gnu/liblapack.so.3 (liblapack.so.3-powerpc64le-linux-gnu) in auto mode 295s Setting up fontconfig-config (2.15.0-1.1ubuntu2) ... 295s Setting up python3-pytest (8.3.2-1) ... 296s Setting up libwebpdemux2:ppc64el (1.4.0-0.1) ... 296s Setting up xfonts-utils (1:7.7+7) ... 296s Setting up libraqm0:ppc64el (0.10.1-1build1) ... 296s Setting up python3-numpy (1:1.26.4+ds-11build1) ... 298s Setting up libtiff6:ppc64el (4.5.1+git230720-4ubuntu4) ... 298s Setting up xml-core (0.19) ... 298s Setting up libfontconfig1:ppc64el (2.15.0-1.1ubuntu2) ... 298s Setting up fonts-urw-base35 (20200910-8) ... 298s Setting up libcairo2:ppc64el (1.18.2-2) ... 298s Setting up python3-pil:ppc64el (10.4.0-1ubuntu1) ... 299s Setting up python3-cairo (1.26.1-2) ... 299s Setting up python3-rlpycairo (0.3.0-3) ... 299s Setting up python3-reportlab (4.2.2-1) ... 300s Processing triggers for libc-bin (2.40-1ubuntu3) ... 300s Processing triggers for man-db (2.12.1-3) ... 301s Processing triggers for sgml-base (1.31) ... 301s Setting up w3c-sgml-lib (1.3-3) ... 332s Setting up python3-biopython (1.83+dfsg1-3) ... 333s Setting up autopkgtest-satdep (0) ... 337s (Reading database ... 76992 files and directories currently installed.) 337s Removing autopkgtest-satdep (0) ... 338s autopkgtest [07:48:37]: test run-unit-test: [----------------------- 338s Testing with python3.12 in /tmp/autopkgtest.SqLnWT/build.mwt/src: 338s ============================= test session starts ============================== 338s platform linux -- Python 3.12.7, pytest-8.3.2, pluggy-1.5.0 -- /usr/bin/python3.12 338s cachedir: .pytest_cache 338s rootdir: /tmp/autopkgtest.SqLnWT/build.mwt/src 338s configfile: pyproject.toml 338s plugins: typeguard-4.3.0 339s collecting ... collected 136 items 339s 339s tests/test_FastaRecord.py::test_sequence_uppercase PASSED [ 0%] 339s tests/test_FastaRecord.py::test_long_names PASSED [ 1%] 339s tests/test_FastaRecord.py::test_issue_62 PASSED [ 2%] 339s tests/test_FastaRecord.py::test_unpadded_length PASSED [ 2%] 339s tests/test_FastaRecord.py::test_numpy_array PASSED [ 3%] 339s tests/test_FastaRecord_iter.py::test_fetch_whole_fasta PASSED [ 4%] 339s tests/test_FastaRecord_iter.py::test_line_len PASSED [ 5%] 339s tests/test_FastaRecord_iter.py::test_reverse_iter PASSED [ 5%] 339s tests/test_FastaVariant.py::test_fetch_variant SKIPPED (pysam not in...) [ 6%] 339s tests/test_FastaVariant.py::test_fetch_hom_variant SKIPPED (pysam no...) [ 7%] 339s tests/test_FastaVariant.py::test_fetch_het_variant SKIPPED (pysam no...) [ 8%] 339s tests/test_FastaVariant.py::test_fetch_chr_not_in_vcf SKIPPED (pysam...) [ 8%] 339s tests/test_FastaVariant.py::test_all_pos SKIPPED (pysam not installed.) [ 9%] 339s tests/test_FastaVariant.py::test_all_diff SKIPPED (pysam not installed.) [ 10%] 339s tests/test_Fasta_bgzip.py::test_build_issue_126 XFAIL [ 11%] 339s tests/test_Fasta_bgzip.py::test_integer_slice PASSED [ 11%] 339s tests/test_Fasta_bgzip.py::test_integer_index PASSED [ 12%] 339s tests/test_Fasta_bgzip.py::test_fetch_whole_fasta PASSED [ 13%] 339s tests/test_Fasta_bgzip.py::test_line_len PASSED [ 13%] 339s tests/test_Fasta_bgzip.py::test_mutable_bgzf PASSED [ 14%] 339s tests/test_Fasta_bgzip.py::test_long_names XFAIL [ 15%] 339s tests/test_Fasta_bgzip.py::test_fetch_whole_entry PASSED [ 16%] 339s tests/test_Fasta_bgzip.py::test_fetch_middle PASSED [ 16%] 339s tests/test_Fasta_bgzip.py::test_fetch_end PASSED [ 17%] 339s tests/test_Fasta_bgzip.py::test_fetch_border PASSED [ 18%] 339s tests/test_Fasta_bgzip.py::test_rev PASSED [ 19%] 339s tests/test_Fasta_bgzip.py::test_fetch_past_bounds PASSED [ 19%] 339s tests/test_Fasta_bgzip.py::test_fetch_negative PASSED [ 20%] 339s tests/test_Fasta_bgzip.py::test_fetch_reversed_coordinates PASSED [ 21%] 339s tests/test_Fasta_bgzip.py::test_fetch_keyerror PASSED [ 22%] 339s tests/test_Fasta_bgzip.py::test_blank_string PASSED [ 22%] 339s tests/test_Fasta_bgzip.py::test_slice_from_beginning PASSED [ 23%] 339s tests/test_Fasta_bgzip.py::test_slice_from_end PASSED [ 24%] 339s tests/test_Fasta_bgzip.py::test_issue_74_start PASSED [ 25%] 339s tests/test_Fasta_bgzip.py::test_issue_74_consistency PASSED [ 25%] 339s tests/test_Fasta_bgzip.py::test_issue_74_end_faidx PASSED [ 26%] 339s tests/test_Fasta_bgzip.py::test_issue_74_end_fasta PASSED [ 27%] 339s tests/test_Fasta_bgzip.py::test_issue_79_fix PASSED [ 27%] 339s tests/test_Fasta_bgzip.py::test_issue_79_fix_negate PASSED [ 28%] 339s tests/test_Fasta_bgzip.py::test_issue_79_fix_one_based_false PASSED [ 29%] 339s tests/test_Fasta_bgzip.py::test_issue_79_fix_one_based_false_negate PASSED [ 30%] 339s tests/test_Fasta_bgzip.py::test_fetch_border_padded PASSED [ 30%] 339s tests/test_Fasta_integer_index.py::test_integer_slice PASSED [ 31%] 339s tests/test_Fasta_integer_index.py::test_integer_index PASSED [ 32%] 339s tests/test_Fasta_synchronization.py::TestFastaIntIndex::test_simultaneous_reads PASSED [ 33%] 340s tests/test_Fasta_synchronization.py::TestFastaIntIndex::test_simultaneous_reads_and_writes PASSED [ 33%] 340s tests/test_Fasta_synchronization.py::TestFastaIntIndex::test_simultaneous_writes PASSED [ 34%] 340s tests/test_Path.py::test_Faidx PASSED [ 35%] 340s tests/test_Path.py::test_Fasta PASSED [ 36%] 340s tests/test_bio_seqio.py::test_fetch_whole_entry PASSED [ 36%] 340s tests/test_bio_seqio.py::test_slice_whole_entry PASSED [ 37%] 340s tests/test_bio_seqio.py::test_revcomp_whole_entry PASSED [ 38%] 340s tests/test_faidx.py::test_short_line_lengths PASSED [ 38%] 340s tests/test_faidx.py::test_fetch_whole_file PASSED [ 39%] 340s tests/test_faidx.py::test_split_entry PASSED [ 40%] 340s tests/test_faidx.py::test_fetch_error PASSED [ 41%] 340s tests/test_faidx.py::test_key_warning PASSED [ 41%] 340s tests/test_faidx.py::test_auto_strand PASSED [ 42%] 340s tests/test_faidx.py::test_regexp PASSED [ 43%] 340s tests/test_faidx.py::test_not_regexp PASSED [ 44%] 340s tests/test_faidx.py::test_not_regexp_multi PASSED [ 44%] 340s tests/test_feature_bounds_check.py::test_index_zero_length PASSED [ 45%] 340s tests/test_feature_bounds_check.py::test_fetch_zero_length PASSED [ 46%] 340s tests/test_feature_bounds_check.py::test_as_raw_zero_length_subsequence PASSED [ 47%] 340s tests/test_feature_bounds_check.py::test_zero_length_subsequence PASSED [ 47%] 340s tests/test_feature_bounds_check.py::test_fetch_whole_entry PASSED [ 48%] 340s tests/test_feature_bounds_check.py::test_fetch_middle PASSED [ 49%] 340s tests/test_feature_bounds_check.py::test_fetch_end PASSED [ 50%] 340s tests/test_feature_bounds_check.py::test_fetch_border PASSED [ 50%] 340s tests/test_feature_bounds_check.py::test_rev PASSED [ 51%] 340s tests/test_feature_bounds_check.py::test_fetch_past_bounds PASSED [ 52%] 340s tests/test_feature_bounds_check.py::test_fetch_negative PASSED [ 52%] 340s tests/test_feature_bounds_check.py::test_fetch_reversed_coordinates PASSED [ 53%] 340s tests/test_feature_bounds_check.py::test_fetch_keyerror PASSED [ 54%] 340s tests/test_feature_bounds_check.py::test_blank_string PASSED [ 55%] 340s tests/test_feature_bounds_check.py::test_slice_from_beginning PASSED [ 55%] 340s tests/test_feature_bounds_check.py::test_slice_from_end PASSED [ 56%] 340s tests/test_feature_bounds_check.py::test_issue_74_start PASSED [ 57%] 340s tests/test_feature_bounds_check.py::test_issue_74_consistency PASSED [ 58%] 340s tests/test_feature_bounds_check.py::test_issue_74_end_faidx PASSED [ 58%] 340s tests/test_feature_bounds_check.py::test_issue_74_end_fasta PASSED [ 59%] 340s tests/test_feature_bounds_check.py::test_issue_79_fix PASSED [ 60%] 340s tests/test_feature_bounds_check.py::test_issue_79_fix_negate PASSED [ 61%] 340s tests/test_feature_bounds_check.py::test_issue_79_fix_one_based_false PASSED [ 61%] 340s tests/test_feature_bounds_check.py::test_issue_79_fix_one_based_false_negate PASSED [ 62%] 340s tests/test_feature_default_seq.py::test_fetch_border_padded PASSED [ 63%] 340s tests/test_feature_indexing.py::test_version_issue_206 PASSED [ 63%] 340s tests/test_feature_indexing.py::test_build PASSED [ 64%] 340s tests/test_feature_indexing.py::test_build_issue_141 PASSED [ 65%] 340s tests/test_feature_indexing.py::test_build_issue_111 PASSED [ 66%] 340s tests/test_feature_indexing.py::test_order PASSED [ 66%] 345s tests/test_feature_indexing.py::test_valgrind_short_lines PASSED [ 67%] 349s tests/test_feature_indexing.py::test_valgrind_long_lines PASSED [ 68%] 354s tests/test_feature_indexing.py::test_valgrind_blank_lines PASSED [ 69%] 356s tests/test_feature_indexing.py::test_reindex_on_modification PASSED [ 69%] 356s tests/test_feature_indexing.py::test_build_issue_83 PASSED [ 70%] 356s tests/test_feature_indexing.py::test_build_issue_96_fail_build_faidx PASSED [ 71%] 356s tests/test_feature_indexing.py::test_build_issue_96_fail_read_malformed_index_duplicate_key PASSED [ 72%] 356s tests/test_feature_indexing.py::test_read_back_index PASSED [ 72%] 356s tests/test_feature_indexing.py::test_issue_134_no_build_index PASSED [ 73%] 356s tests/test_feature_indexing.py::test_issue_144_no_defline PASSED [ 74%] 356s tests/test_feature_key_function.py::test_keys PASSED [ 75%] 356s tests/test_feature_key_function.py::test_key_function_by_dictionary_get_key PASSED [ 75%] 356s tests/test_feature_key_function.py::test_key_function_by_fetch PASSED [ 76%] 356s tests/test_feature_key_function.py::test_duplicated_keys PASSED [ 77%] 356s tests/test_feature_key_function.py::test_duplicated_keys_shortest PASSED [ 77%] 356s tests/test_feature_key_function.py::test_duplicated_keys_longest PASSED [ 78%] 356s tests/test_feature_read_ahead_buffer.py::test_buffer_false PASSED [ 79%] 356s tests/test_feature_read_ahead_buffer.py::test_buffer_true PASSED [ 80%] 356s tests/test_feature_read_ahead_buffer.py::test_buffer_exceed PASSED [ 80%] 356s tests/test_feature_read_ahead_buffer.py::test_bounds_error PASSED [ 81%] 356s tests/test_feature_read_ahead_buffer.py::test_buffer_value PASSED [ 82%] 356s tests/test_feature_sequence_as_raw.py::test_as_raw_false PASSED [ 83%] 356s tests/test_feature_sequence_as_raw.py::test_as_raw_true PASSED [ 83%] 356s tests/test_feature_sequence_as_raw.py::test_as_raw_false_error PASSED [ 84%] 356s tests/test_feature_sequence_as_raw.py::test_as_raw_true_error PASSED [ 85%] 356s tests/test_feature_sequence_as_raw.py::test_as_raw_type_when_blen_lt_0 PASSED [ 86%] 356s tests/test_feature_spliced_seq.py::test_split_seq PASSED [ 86%] 356s tests/test_feature_spliced_seq.py::test_get_seq_rc PASSED [ 87%] 356s tests/test_feature_split_char.py::test_keys PASSED [ 88%] 356s tests/test_feature_split_char.py::test_key_function_by_dictionary_get_key PASSED [ 88%] 356s tests/test_feature_split_char.py::test_key_function_by_fetch PASSED [ 89%] 356s tests/test_feature_split_char.py::test_stop PASSED [ 90%] 356s tests/test_fsspec.py::test_fsspec_fetch_whole_file SKIPPED (uncondit...) [ 91%] 356s tests/test_fsspec.py::test_fsspec_default_index SKIPPED (uncondition...) [ 91%] 356s tests/test_fsspec.py::test_fsspec_local_index SKIPPED (unconditional...) [ 92%] 356s tests/test_fsspec.py::test_fsspec_remote_index SKIPPED (unconditiona...) [ 93%] 356s tests/test_sequence_class.py::test_negate PASSED [ 94%] 356s tests/test_sequence_class.py::test_negate_metadata PASSED [ 94%] 356s tests/test_sequence_class.py::test_seq_invalid PASSED [ 95%] 356s tests/test_sequence_class.py::test_integer_index PASSED [ 96%] 356s tests/test_sequence_class.py::test_slice_index PASSED [ 97%] 356s tests/test_sequence_class.py::test_comp_invalid PASSED [ 97%] 356s tests/test_sequence_class.py::test_check_coordinates PASSED [ 98%] 356s tests/test_sequence_class.py::test_comp_valid PASSED [ 99%] 356s tests/test_sequence_class.py::test_comp_empty PASSED [100%] 356s 356s ================= 124 passed, 10 skipped, 2 xfailed in 17.21s ================== 356s autopkgtest [07:48:55]: test run-unit-test: -----------------------] 357s run-unit-test PASS 357s autopkgtest [07:48:56]: test run-unit-test: - - - - - - - - - - results - - - - - - - - - - 357s autopkgtest [07:48:56]: test autodep8-python3: preparing testbed 486s autopkgtest [07:51:05]: testbed dpkg architecture: ppc64el 486s autopkgtest [07:51:05]: testbed apt version: 2.9.8 486s autopkgtest [07:51:05]: @@@@@@@@@@@@@@@@@@@@ test bed setup 487s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease [73.9 kB] 487s Get:2 http://ftpmaster.internal/ubuntu plucky-proposed/main Sources [177 kB] 487s Get:3 http://ftpmaster.internal/ubuntu plucky-proposed/universe Sources [2268 kB] 488s Get:4 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse Sources [31.2 kB] 488s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/restricted Sources [7016 B] 488s Get:6 http://ftpmaster.internal/ubuntu plucky-proposed/main ppc64el Packages [213 kB] 488s Get:7 http://ftpmaster.internal/ubuntu plucky-proposed/universe ppc64el Packages [1576 kB] 488s Get:8 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse ppc64el Packages [37.8 kB] 488s Fetched 4384 kB in 1s (3162 kB/s) 488s Reading package lists... 491s Reading package lists... 491s Building dependency tree... 491s Reading state information... 491s Calculating upgrade... 492s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 492s Reading package lists... 492s Building dependency tree... 492s Reading state information... 492s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 492s Hit:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease 493s Hit:2 http://ftpmaster.internal/ubuntu plucky InRelease 493s Hit:3 http://ftpmaster.internal/ubuntu plucky-updates InRelease 493s Hit:4 http://ftpmaster.internal/ubuntu plucky-security InRelease 494s Reading package lists... 494s Reading package lists... 494s Building dependency tree... 494s Reading state information... 494s Calculating upgrade... 494s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 494s Reading package lists... 494s Building dependency tree... 494s Reading state information... 495s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 499s Reading package lists... 499s Building dependency tree... 499s Reading state information... 500s Starting pkgProblemResolver with broken count: 0 500s Starting 2 pkgProblemResolver with broken count: 0 500s Done 500s The following additional packages will be installed: 500s python3-all python3-importlib-metadata python3-packaging python3-pyfaidx 500s Recommended packages: 500s python3-biopython 500s The following NEW packages will be installed: 500s autopkgtest-satdep python3-all python3-importlib-metadata python3-packaging 500s python3-pyfaidx 500s 0 upgraded, 5 newly installed, 0 to remove and 0 not upgraded. 500s Need to get 92.1 kB/92.8 kB of archives. 500s After this operation, 410 kB of additional disk space will be used. 500s Get:1 /tmp/autopkgtest.SqLnWT/2-autopkgtest-satdep.deb autopkgtest-satdep ppc64el 0 [716 B] 500s Get:2 http://ftpmaster.internal/ubuntu plucky/main ppc64el python3-all ppc64el 3.12.6-0ubuntu1 [888 B] 500s Get:3 http://ftpmaster.internal/ubuntu plucky/main ppc64el python3-importlib-metadata all 8.2.0-2 [20.3 kB] 500s Get:4 http://ftpmaster.internal/ubuntu plucky/main ppc64el python3-packaging all 24.1-1 [41.4 kB] 500s Get:5 http://ftpmaster.internal/ubuntu plucky/universe ppc64el python3-pyfaidx all 0.8.1.2-1 [29.6 kB] 501s Fetched 92.1 kB in 0s (194 kB/s) 501s Selecting previously unselected package python3-all. 501s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 73549 files and directories currently installed.) 501s Preparing to unpack .../python3-all_3.12.6-0ubuntu1_ppc64el.deb ... 501s Unpacking python3-all (3.12.6-0ubuntu1) ... 501s Selecting previously unselected package python3-importlib-metadata. 501s Preparing to unpack .../python3-importlib-metadata_8.2.0-2_all.deb ... 501s Unpacking python3-importlib-metadata (8.2.0-2) ... 501s Selecting previously unselected package python3-packaging. 501s Preparing to unpack .../python3-packaging_24.1-1_all.deb ... 501s Unpacking python3-packaging (24.1-1) ... 501s Selecting previously unselected package python3-pyfaidx. 501s Preparing to unpack .../python3-pyfaidx_0.8.1.2-1_all.deb ... 501s Unpacking python3-pyfaidx (0.8.1.2-1) ... 501s Selecting previously unselected package autopkgtest-satdep. 501s Preparing to unpack .../2-autopkgtest-satdep.deb ... 501s Unpacking autopkgtest-satdep (0) ... 501s Setting up python3-importlib-metadata (8.2.0-2) ... 501s Setting up python3-all (3.12.6-0ubuntu1) ... 501s Setting up python3-packaging (24.1-1) ... 501s Setting up python3-pyfaidx (0.8.1.2-1) ... 501s Setting up autopkgtest-satdep (0) ... 501s Processing triggers for man-db (2.12.1-3) ... 504s (Reading database ... 73610 files and directories currently installed.) 504s Removing autopkgtest-satdep (0) ... 509s autopkgtest [07:51:28]: test autodep8-python3: set -e ; for py in $(py3versions -r 2>/dev/null) ; do cd "$AUTOPKGTEST_TMP" ; echo "Testing with $py:" ; $py -c "import pyfaidx; print(pyfaidx)" ; done 509s autopkgtest [07:51:28]: test autodep8-python3: [----------------------- 509s Testing with python3.12: 510s 510s autopkgtest [07:51:29]: test autodep8-python3: -----------------------] 510s autodep8-python3 PASS (superficial) 510s autopkgtest [07:51:29]: test autodep8-python3: - - - - - - - - - - results - - - - - - - - - - 511s autopkgtest [07:51:30]: @@@@@@@@@@@@@@@@@@@@ summary 511s run-unit-test PASS 511s autodep8-python3 PASS (superficial) 515s nova [W] Using flock in prodstack6-ppc64el 515s Creating nova instance adt-plucky-ppc64el-python-pyfaidx-20241103-074259-juju-7f2275-prod-proposed-migration-environment-15-363367f0-0826-4bd1-ab68-313cc0606336 from image adt/ubuntu-plucky-ppc64el-server-20241103.img (UUID 8938751d-c60c-4749-8c34-7df179962ea5)... 515s nova [W] Using flock in prodstack6-ppc64el 515s Creating nova instance adt-plucky-ppc64el-python-pyfaidx-20241103-074259-juju-7f2275-prod-proposed-migration-environment-15-363367f0-0826-4bd1-ab68-313cc0606336 from image adt/ubuntu-plucky-ppc64el-server-20241103.img (UUID 8938751d-c60c-4749-8c34-7df179962ea5)...