0s autopkgtest [20:57:24]: starting date and time: 2025-02-19 20:57:24+0000
  0s autopkgtest [20:57:24]: git checkout: 325255d2 Merge branch 'pin-any-arch' into 'ubuntu/production'
  0s autopkgtest [20:57:24]: host juju-7f2275-prod-proposed-migration-environment-15; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.1m321txa/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:sphinx --apt-upgrade python-pybedtools --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=sphinx/8.1.3-5 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest-ppc64el --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-15@bos03-ppc64el-4.secgroup --name adt-plucky-ppc64el-python-pybedtools-20250219-205724-juju-7f2275-prod-proposed-migration-environment-15-2440f74c-f81e-4b77-a46a-a88aefa1207b --image adt/ubuntu-plucky-ppc64el-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-15 --net-id=net_prod-proposed-migration-ppc64el -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,keyserver.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com,radosgw.ps5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/
 83s autopkgtest [20:58:47]: testbed dpkg architecture: ppc64el
 83s autopkgtest [20:58:47]: testbed apt version: 2.9.29
 83s autopkgtest [20:58:47]: @@@@@@@@@@@@@@@@@@@@ test bed setup
 83s autopkgtest [20:58:47]: testbed release detected to be: None
 84s autopkgtest [20:58:48]: updating testbed package index (apt update)
 85s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease [110 kB]
 85s Hit:2 http://ftpmaster.internal/ubuntu plucky InRelease
 85s Hit:3 http://ftpmaster.internal/ubuntu plucky-updates InRelease
 85s Hit:4 http://ftpmaster.internal/ubuntu plucky-security InRelease
 85s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/main Sources [78.4 kB]
 85s Get:6 http://ftpmaster.internal/ubuntu plucky-proposed/universe Sources [731 kB]
 85s Get:7 http://ftpmaster.internal/ubuntu plucky-proposed/restricted Sources [3120 B]
 85s Get:8 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse Sources [14.5 kB]
 85s Get:9 http://ftpmaster.internal/ubuntu plucky-proposed/main ppc64el Packages [104 kB]
 85s Get:10 http://ftpmaster.internal/ubuntu plucky-proposed/restricted ppc64el Packages [760 B]
 85s Get:11 http://ftpmaster.internal/ubuntu plucky-proposed/universe ppc64el Packages [675 kB]
 85s Get:12 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse ppc64el Packages [5760 B]
 86s Fetched 1723 kB in 1s (1522 kB/s)
 87s Reading package lists...
 87s + lsb_release --codename --short
 87s + RELEASE=plucky
 87s + cat
 87s Reading package lists...+ [ plucky != trusty ]
 87s + DEBIAN_FRONTEND=noninteractive eatmydata apt-get -y --allow-downgrades -o Dpkg::Options::=--force-confnew dist-upgrade
 87s 
 88s Building dependency tree...
 88s Reading state information...
 88s Calculating upgrade...
 88s The following NEW packages will be installed:
 88s   libapt-pkg7.0
 88s The following packages will be upgraded:
 88s   apparmor apt apt-utils dhcpcd-base iproute2 libapparmor1 libgpgme11t64
 88s   liblsof0 libp11-kit0 liburcu8t64 lsof python-apt-common python3-apt rsyslog
 88s   sysvinit-utils
 89s 15 upgraded, 1 newly installed, 0 to remove and 0 not upgraded.
 89s Need to get 7150 kB of archives.
 89s After this operation, 4118 kB of additional disk space will be used.
 89s Get:1 http://ftpmaster.internal/ubuntu plucky/main ppc64el sysvinit-utils ppc64el 3.14-1ubuntu1 [37.0 kB]
 89s Get:2 http://ftpmaster.internal/ubuntu plucky/main ppc64el libapt-pkg7.0 ppc64el 2.9.30 [1152 kB]
 89s Get:3 http://ftpmaster.internal/ubuntu plucky/main ppc64el apt ppc64el 2.9.30 [1439 kB]
 89s Get:4 http://ftpmaster.internal/ubuntu plucky/main ppc64el apt-utils ppc64el 2.9.30 [228 kB]
 89s Get:5 http://ftpmaster.internal/ubuntu plucky/main ppc64el dhcpcd-base ppc64el 1:10.1.0-7 [280 kB]
 89s Get:6 http://ftpmaster.internal/ubuntu plucky/main ppc64el iproute2 ppc64el 6.13.0-1ubuntu1 [1419 kB]
 89s Get:7 http://ftpmaster.internal/ubuntu plucky/main ppc64el libapparmor1 ppc64el 4.1.0~beta5-0ubuntu2 [58.6 kB]
 89s Get:8 http://ftpmaster.internal/ubuntu plucky/main ppc64el libp11-kit0 ppc64el 0.25.5-2ubuntu3 [309 kB]
 89s Get:9 http://ftpmaster.internal/ubuntu plucky/main ppc64el python-apt-common all 2.9.9 [21.2 kB]
 89s Get:10 http://ftpmaster.internal/ubuntu plucky/main ppc64el python3-apt ppc64el 2.9.9 [194 kB]
 89s Get:11 http://ftpmaster.internal/ubuntu plucky/main ppc64el rsyslog ppc64el 8.2412.0-2ubuntu1 [632 kB]
 89s Get:12 http://ftpmaster.internal/ubuntu plucky/main ppc64el apparmor ppc64el 4.1.0~beta5-0ubuntu2 [807 kB]
 89s Get:13 http://ftpmaster.internal/ubuntu plucky/main ppc64el liburcu8t64 ppc64el 0.15.1-1 [72.6 kB]
 89s Get:14 http://ftpmaster.internal/ubuntu plucky/main ppc64el lsof ppc64el 4.99.4+dfsg-1 [255 kB]
 89s Get:15 http://ftpmaster.internal/ubuntu plucky/main ppc64el liblsof0 ppc64el 4.99.4+dfsg-1 [68.4 kB]
 89s Get:16 http://ftpmaster.internal/ubuntu plucky/main ppc64el libgpgme11t64 ppc64el 1.24.2-1ubuntu1 [177 kB]
 90s Preconfiguring packages ...
 90s Fetched 7150 kB in 1s (8002 kB/s)
 90s (Reading database ... 
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(Reading database ... 106322 files and directories currently installed.)
 90s Preparing to unpack .../sysvinit-utils_3.14-1ubuntu1_ppc64el.deb ...
 90s Unpacking sysvinit-utils (3.14-1ubuntu1) over (3.08-6ubuntu3) ...
 90s Setting up sysvinit-utils (3.14-1ubuntu1) ...
 90s Selecting previously unselected package libapt-pkg7.0:ppc64el.
 90s (Reading database ... 
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(Reading database ... 100%
(Reading database ... 106322 files and directories currently installed.)
 90s Preparing to unpack .../libapt-pkg7.0_2.9.30_ppc64el.deb ...
 90s Unpacking libapt-pkg7.0:ppc64el (2.9.30) ...
 90s Setting up libapt-pkg7.0:ppc64el (2.9.30) ...
 91s (Reading database ... 
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(Reading database ... 106371 files and directories currently installed.)
 91s Preparing to unpack .../apt_2.9.30_ppc64el.deb ...
 91s Unpacking apt (2.9.30) over (2.9.29) ...
 91s Setting up apt (2.9.30) ...
 92s (Reading database ... 
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(Reading database ... 95%
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(Reading database ... 106371 files and directories currently installed.)
 92s Preparing to unpack .../00-apt-utils_2.9.30_ppc64el.deb ...
 92s Unpacking apt-utils (2.9.30) over (2.9.29) ...
 92s Preparing to unpack .../01-dhcpcd-base_1%3a10.1.0-7_ppc64el.deb ...
 92s Unpacking dhcpcd-base (1:10.1.0-7) over (1:10.1.0-6) ...
 92s Preparing to unpack .../02-iproute2_6.13.0-1ubuntu1_ppc64el.deb ...
 92s Unpacking iproute2 (6.13.0-1ubuntu1) over (6.10.0-2ubuntu1) ...
 92s Preparing to unpack .../03-libapparmor1_4.1.0~beta5-0ubuntu2_ppc64el.deb ...
 92s Unpacking libapparmor1:ppc64el (4.1.0~beta5-0ubuntu2) over (4.1.0~beta1-0ubuntu5) ...
 92s Preparing to unpack .../04-libp11-kit0_0.25.5-2ubuntu3_ppc64el.deb ...
 92s Unpacking libp11-kit0:ppc64el (0.25.5-2ubuntu3) over (0.25.5-2ubuntu2) ...
 92s Preparing to unpack .../05-python-apt-common_2.9.9_all.deb ...
 92s Unpacking python-apt-common (2.9.9) over (2.9.8) ...
 92s Preparing to unpack .../06-python3-apt_2.9.9_ppc64el.deb ...
 92s /usr/bin/py3clean:101: DeprecationWarning: glob.glob1 is deprecated and will be removed in Python 3.15. Use glob.glob and pass a directory to its root_dir argument instead.
 92s   for fn in glob1(directory, "%s.*" % fname):
 92s Unpacking python3-apt (2.9.9) over (2.9.8) ...
 93s Preparing to unpack .../07-rsyslog_8.2412.0-2ubuntu1_ppc64el.deb ...
 93s Unpacking rsyslog (8.2412.0-2ubuntu1) over (8.2412.0-1ubuntu1) ...
 93s Preparing to unpack .../08-apparmor_4.1.0~beta5-0ubuntu2_ppc64el.deb ...
 94s Unpacking apparmor (4.1.0~beta5-0ubuntu2) over (4.1.0~beta1-0ubuntu5) ...
 94s dpkg: warning: unable to delete old directory '/lib/apparmor': Directory not empty
 94s Preparing to unpack .../09-liburcu8t64_0.15.1-1_ppc64el.deb ...
 94s Unpacking liburcu8t64:ppc64el (0.15.1-1) over (0.15.0-1) ...
 94s Preparing to unpack .../10-lsof_4.99.4+dfsg-1_ppc64el.deb ...
 94s Unpacking lsof (4.99.4+dfsg-1) over (4.99.3+dfsg-2) ...
 94s Preparing to unpack .../11-liblsof0_4.99.4+dfsg-1_ppc64el.deb ...
 94s Unpacking liblsof0 (4.99.4+dfsg-1) over (4.99.3+dfsg-2) ...
 94s Preparing to unpack .../12-libgpgme11t64_1.24.2-1ubuntu1_ppc64el.deb ...
 94s Unpacking libgpgme11t64:ppc64el (1.24.2-1ubuntu1) over (1.24.1-4ubuntu1) ...
 94s Setting up liburcu8t64:ppc64el (0.15.1-1) ...
 94s Setting up libapparmor1:ppc64el (4.1.0~beta5-0ubuntu2) ...
 94s Setting up apt-utils (2.9.30) ...
 94s Setting up liblsof0 (4.99.4+dfsg-1) ...
 94s Setting up iproute2 (6.13.0-1ubuntu1) ...
 94s Setting up rsyslog (8.2412.0-2ubuntu1) ...
 95s info: The user `syslog' is already a member of `adm'.
 96s Setting up apparmor (4.1.0~beta5-0ubuntu2) ...
 96s Installing new version of config file /etc/apparmor.d/abstractions/dconf ...
 96s Installing new version of config file /etc/apparmor.d/abstractions/mesa ...
 96s Installing new version of config file /etc/apparmor.d/abstractions/nameservice ...
 96s Installing new version of config file /etc/apparmor.d/abstractions/php ...
 96s Installing new version of config file /etc/apparmor.d/abstractions/python ...
 96s Installing new version of config file /etc/apparmor.d/slirp4netns ...
 96s Installing new version of config file /etc/apparmor.d/toybox ...
 96s Installing new version of config file /etc/apparmor.d/transmission ...
 96s Installing new version of config file /etc/apparmor.d/tunables/global ...
 98s Reloading AppArmor profiles 
100s Setting up libp11-kit0:ppc64el (0.25.5-2ubuntu3) ...
100s Setting up dhcpcd-base (1:10.1.0-7) ...
100s Setting up lsof (4.99.4+dfsg-1) ...
100s Setting up python-apt-common (2.9.9) ...
100s Setting up libgpgme11t64:ppc64el (1.24.2-1ubuntu1) ...
100s Setting up python3-apt (2.9.9) ...
100s Processing triggers for systemd (257.2-3ubuntu1) ...
100s Processing triggers for man-db (2.13.0-1) ...
103s Processing triggers for libc-bin (2.40-4ubuntu1) ...
103s + rm /etc/apt/preferences.d/force-downgrade-to-release.pref
103s + /usr/lib/apt/apt-helper analyze-pattern ?true
103s + + sed s/\./\\./g
103s uname -r
103s + running_kernel_pattern=^linux-.*6\.12\.0-15-generic.*
103s + apt list ?obsolete
103s + tail -n+2
103s + cut -d/ -f1
103s + grep -v ^linux-.*6\.12\.0-15-generic.*
105s + true
105s + obsolete_pkgs=
105s + DEBIAN_FRONTEND=noninteractive eatmydata apt-get -y purge --autoremove
105s Reading package lists...
105s Building dependency tree...
105s Reading state information...
105s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
105s + grep -q trusty /etc/lsb-release
105s + [ ! -d /usr/share/doc/unattended-upgrades ]
105s + [ ! -d /usr/share/doc/lxd ]
105s + [ ! -d /usr/share/doc/lxd-client ]
105s + [ ! -d /usr/share/doc/snapd ]
105s + type iptables
105s + cat
105s + chmod 755 /etc/rc.local
105s + . /etc/rc.local
105s + iptables -w -t mangle -A FORWARD -p tcp --tcp-flags SYN,RST SYN -j TCPMSS --clamp-mss-to-pmtu
105s + iptables -A OUTPUT -d 10.255.255.1/32 -p tcp -j DROP
105s + iptables -A OUTPUT -d 10.255.255.2/32 -p tcp -j DROP
105s + uname -m
105s + [ ppc64le = ppc64le ]
105s + systemctl is-active keyboard-setup.service
105s + [ active = failed ]
105s + [ -d /run/systemd/system ]
105s + systemd-detect-virt --quiet --vm
105s + mkdir -p /etc/systemd/system/systemd-random-seed.service.d/
105s + cat
105s + grep -q lz4 /etc/initramfs-tools/initramfs.conf
105s + echo COMPRESS=lz4
105s autopkgtest [20:59:09]: upgrading testbed (apt dist-upgrade and autopurge)
106s Reading package lists...
106s Building dependency tree...
106s Reading state information...
106s Calculating upgrade...Starting pkgProblemResolver with broken count: 0
106s Starting 2 pkgProblemResolver with broken count: 0
106s Done
107s Entering ResolveByKeep
107s 
107s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
108s Reading package lists...
108s Building dependency tree...
108s Reading state information...
108s Starting pkgProblemResolver with broken count: 0
108s Starting 2 pkgProblemResolver with broken count: 0
108s Done
109s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
111s autopkgtest [20:59:15]: rebooting testbed after setup commands that affected boot
145s autopkgtest-virt-ssh: WARNING: ssh connection failed. Retrying in 3 seconds...
163s autopkgtest [21:00:07]: testbed running kernel: Linux 6.12.0-15-generic #15-Ubuntu SMP Tue Feb  4 16:32:08 UTC 2025
165s autopkgtest [21:00:09]: @@@@@@@@@@@@@@@@@@@@ apt-source python-pybedtools
171s Get:1 http://ftpmaster.internal/ubuntu plucky/universe python-pybedtools 0.10.0-4 (dsc) [2623 B]
171s Get:2 http://ftpmaster.internal/ubuntu plucky/universe python-pybedtools 0.10.0-4 (tar) [12.0 MB]
171s Get:3 http://ftpmaster.internal/ubuntu plucky/universe python-pybedtools 0.10.0-4 (diff) [33.5 kB]
171s gpgv: Signature made Fri Dec 27 01:57:35 2024 UTC
171s gpgv:                using RSA key 724D609337113C710550D7473C26763F6C67E6E2
171s gpgv:                issuer "crusoe@debian.org"
171s gpgv: Can't check signature: No public key
171s dpkg-source: warning: cannot verify inline signature for ./python-pybedtools_0.10.0-4.dsc: no acceptable signature found
172s autopkgtest [21:00:16]: testing package python-pybedtools version 0.10.0-4
172s autopkgtest [21:00:16]: build not needed
175s autopkgtest [21:00:19]: test pybuild-autopkgtest: preparing testbed
175s Reading package lists...
175s Building dependency tree...
175s Reading state information...
175s Starting pkgProblemResolver with broken count: 0
175s Starting 2 pkgProblemResolver with broken count: 0
175s Done
176s The following NEW packages will be installed:
176s   autoconf automake autopoint autotools-dev bedtools blt build-essential cpp
176s   cpp-14 cpp-14-powerpc64le-linux-gnu cpp-powerpc64le-linux-gnu cython3
176s   debhelper debugedit dh-autoreconf dh-python dh-strip-nondeterminism
176s   docutils-common dwz fontconfig fontconfig-config fonts-dejavu-core
176s   fonts-dejavu-mono fonts-lyx g++ g++-14 g++-14-powerpc64le-linux-gnu
176s   g++-powerpc64le-linux-gnu gcc gcc-14 gcc-14-powerpc64le-linux-gnu
176s   gcc-powerpc64le-linux-gnu gettext intltool-debian libarchive-zip-perl
176s   libasan8 libblas3 libcairo2 libcc1-0 libdatrie1 libdebhelper-perl
176s   libdeflate0 libexpat1-dev libfile-stripnondeterminism-perl libfontconfig1
176s   libgcc-14-dev libgfortran5 libgomp1 libgraphite2-3 libharfbuzz0b libhts3t64
176s   libhtscodecs2 libice6 libimagequant0 libisl23 libitm1 libjbig0
176s   libjpeg-turbo8 libjpeg8 libjs-jquery libjs-jquery-ui libjs-sphinxdoc
176s   libjs-underscore libjson-perl liblapack3 liblbfgsb0 liblcms2-2 liblerc4
176s   liblsan0 libmpc3 libopenjp2-7 libpango-1.0-0 libpangocairo-1.0-0
176s   libpangoft2-1.0-0 libpaper-utils libpaper2 libpixman-1-0 libpython3-all-dev
176s   libpython3-dev libpython3.12-dev libpython3.13-dev libqhull-r8.0
176s   libquadmath0 libraqm0 libsharpyuv0 libsm6 libstdc++-14-dev libtcl8.6
176s   libthai-data libthai0 libtiff6 libtk8.6 libtool libtsan2 libubsan1 libwebp7
176s   libwebpdemux2 libwebpmux3 libxcb-render0 libxcb-shm0 libxft2 libxrender1
176s   libxslt1.1 libxss1 libxt6t64 m4 po-debconf pybedtools-bin
176s   pybuild-plugin-autopkgtest pybuild-plugin-pyproject python-matplotlib-data
176s   python-pybedtools-doc python3-alabaster python3-all python3-all-dev
176s   python3-brotli python3-build python3-contourpy python3-cycler
176s   python3-dateutil python3-decorator python3-defusedxml python3-dev
176s   python3-docutils python3-fonttools python3-fs python3-imagesize
176s   python3-iniconfig python3-installer python3-kiwisolver python3-lxml
176s   python3-lz4 python3-matplotlib python3-mpmath python3-numpy python3-numpydoc
176s   python3-packaging python3-pandas python3-pandas-lib python3-pil
176s   python3-pil.imagetk python3-platformdirs python3-pluggy python3-psutil
176s   python3-pybedtools python3-pyproject-hooks python3-pysam python3-pytest
176s   python3-pytz python3-roman python3-scipy python3-snowballstemmer
176s   python3-sphinx python3-sympy python3-tabulate python3-tk python3-toml
176s   python3-tz python3-ufolib2 python3-wheel python3.12 python3.12-dev
176s   python3.12-minimal python3.12-tk python3.13-dev python3.13-tk r-base-core
176s   sgml-base sphinx-common tk8.6-blt2.5 unicode-data unzip x11-common xdg-utils
176s   xml-core zip zlib1g-dev
176s 0 upgraded, 177 newly installed, 0 to remove and 0 not upgraded.
176s Need to get 213 MB of archives.
176s After this operation, 888 MB of additional disk space will be used.
176s Get:1 http://ftpmaster.internal/ubuntu plucky/main ppc64el python3.12-minimal ppc64el 3.12.9-1 [2465 kB]
177s Get:2 http://ftpmaster.internal/ubuntu plucky/main ppc64el sgml-base all 1.31 [11.4 kB]
177s Get:3 http://ftpmaster.internal/ubuntu plucky/main ppc64el python3.12 ppc64el 3.12.9-1 [671 kB]
177s Get:4 http://ftpmaster.internal/ubuntu plucky/main ppc64el m4 ppc64el 1.4.19-5 [280 kB]
177s Get:5 http://ftpmaster.internal/ubuntu plucky/main ppc64el autoconf all 2.72-3 [382 kB]
177s Get:6 http://ftpmaster.internal/ubuntu plucky/main ppc64el autotools-dev all 20220109.1 [44.9 kB]
177s Get:7 http://ftpmaster.internal/ubuntu plucky/main ppc64el automake all 1:1.17-3 [572 kB]
178s Get:8 http://ftpmaster.internal/ubuntu plucky/main ppc64el autopoint all 0.23.1-1 [619 kB]
178s Get:9 http://ftpmaster.internal/ubuntu plucky/universe ppc64el bedtools ppc64el 2.31.1+dfsg-2 [782 kB]
178s Get:10 http://ftpmaster.internal/ubuntu plucky/main ppc64el libtcl8.6 ppc64el 8.6.16+dfsg-1 [1201 kB]
178s Get:11 http://ftpmaster.internal/ubuntu plucky/main ppc64el fonts-dejavu-mono all 2.37-8 [502 kB]
178s Get:12 http://ftpmaster.internal/ubuntu plucky/main ppc64el fonts-dejavu-core all 2.37-8 [835 kB]
178s Get:13 http://ftpmaster.internal/ubuntu plucky/main ppc64el fontconfig-config ppc64el 2.15.0-2ubuntu1 [37.5 kB]
178s Get:14 http://ftpmaster.internal/ubuntu plucky/main ppc64el libfontconfig1 ppc64el 2.15.0-2ubuntu1 [188 kB]
178s Get:15 http://ftpmaster.internal/ubuntu plucky/main ppc64el libxrender1 ppc64el 1:0.9.10-1.1build1 [23.1 kB]
178s Get:16 http://ftpmaster.internal/ubuntu plucky/main ppc64el libxft2 ppc64el 2.3.6-1build1 [61.5 kB]
178s Get:17 http://ftpmaster.internal/ubuntu plucky/main ppc64el x11-common all 1:7.7+23ubuntu3 [21.7 kB]
178s Get:18 http://ftpmaster.internal/ubuntu plucky/main ppc64el libxss1 ppc64el 1:1.2.3-1build3 [7980 B]
178s Get:19 http://ftpmaster.internal/ubuntu plucky/main ppc64el libtk8.6 ppc64el 8.6.16-1 [946 kB]
178s Get:20 http://ftpmaster.internal/ubuntu plucky/main ppc64el tk8.6-blt2.5 ppc64el 2.5.3+dfsg-7build1 [784 kB]
178s Get:21 http://ftpmaster.internal/ubuntu plucky/main ppc64el blt ppc64el 2.5.3+dfsg-7build1 [4840 B]
178s Get:22 http://ftpmaster.internal/ubuntu plucky/main ppc64el libisl23 ppc64el 0.27-1 [882 kB]
179s Get:23 http://ftpmaster.internal/ubuntu plucky/main ppc64el libmpc3 ppc64el 1.3.1-1build2 [62.1 kB]
179s Get:24 http://ftpmaster.internal/ubuntu plucky/main ppc64el cpp-14-powerpc64le-linux-gnu ppc64el 14.2.0-17ubuntu1 [10.5 MB]
179s Get:25 http://ftpmaster.internal/ubuntu plucky/main ppc64el cpp-14 ppc64el 14.2.0-17ubuntu1 [1038 B]
179s Get:26 http://ftpmaster.internal/ubuntu plucky/main ppc64el cpp-powerpc64le-linux-gnu ppc64el 4:14.2.0-1ubuntu1 [5566 B]
179s Get:27 http://ftpmaster.internal/ubuntu plucky/main ppc64el cpp ppc64el 4:14.2.0-1ubuntu1 [22.4 kB]
179s Get:28 http://ftpmaster.internal/ubuntu plucky/main ppc64el libcc1-0 ppc64el 15-20250213-1ubuntu1 [48.7 kB]
179s Get:29 http://ftpmaster.internal/ubuntu plucky/main ppc64el libgomp1 ppc64el 15-20250213-1ubuntu1 [168 kB]
179s Get:30 http://ftpmaster.internal/ubuntu plucky/main ppc64el libitm1 ppc64el 15-20250213-1ubuntu1 [32.4 kB]
179s Get:31 http://ftpmaster.internal/ubuntu plucky/main ppc64el libasan8 ppc64el 15-20250213-1ubuntu1 [3009 kB]
180s Get:32 http://ftpmaster.internal/ubuntu plucky/main ppc64el liblsan0 ppc64el 15-20250213-1ubuntu1 [1377 kB]
180s Get:33 http://ftpmaster.internal/ubuntu plucky/main ppc64el libtsan2 ppc64el 15-20250213-1ubuntu1 [2734 kB]
180s Get:34 http://ftpmaster.internal/ubuntu plucky/main ppc64el libubsan1 ppc64el 15-20250213-1ubuntu1 [1234 kB]
180s Get:35 http://ftpmaster.internal/ubuntu plucky/main ppc64el libquadmath0 ppc64el 15-20250213-1ubuntu1 [160 kB]
180s Get:36 http://ftpmaster.internal/ubuntu plucky/main ppc64el libgcc-14-dev ppc64el 14.2.0-17ubuntu1 [1620 kB]
180s Get:37 http://ftpmaster.internal/ubuntu plucky/main ppc64el gcc-14-powerpc64le-linux-gnu ppc64el 14.2.0-17ubuntu1 [20.6 MB]
181s Get:38 http://ftpmaster.internal/ubuntu plucky/main ppc64el gcc-14 ppc64el 14.2.0-17ubuntu1 [536 kB]
181s Get:39 http://ftpmaster.internal/ubuntu plucky/main ppc64el gcc-powerpc64le-linux-gnu ppc64el 4:14.2.0-1ubuntu1 [1226 B]
181s Get:40 http://ftpmaster.internal/ubuntu plucky/main ppc64el gcc ppc64el 4:14.2.0-1ubuntu1 [5012 B]
181s Get:41 http://ftpmaster.internal/ubuntu plucky/main ppc64el libstdc++-14-dev ppc64el 14.2.0-17ubuntu1 [2677 kB]
181s Get:42 http://ftpmaster.internal/ubuntu plucky/main ppc64el g++-14-powerpc64le-linux-gnu ppc64el 14.2.0-17ubuntu1 [12.0 MB]
181s Get:43 http://ftpmaster.internal/ubuntu plucky/main ppc64el g++-14 ppc64el 14.2.0-17ubuntu1 [21.8 kB]
181s Get:44 http://ftpmaster.internal/ubuntu plucky/main ppc64el g++-powerpc64le-linux-gnu ppc64el 4:14.2.0-1ubuntu1 [966 B]
181s Get:45 http://ftpmaster.internal/ubuntu plucky/main ppc64el g++ ppc64el 4:14.2.0-1ubuntu1 [1088 B]
181s Get:46 http://ftpmaster.internal/ubuntu plucky/main ppc64el build-essential ppc64el 12.10ubuntu1 [4936 B]
181s Get:47 http://ftpmaster.internal/ubuntu plucky/universe ppc64el cython3 ppc64el 3.0.11+dfsg-2ubuntu1 [3264 kB]
181s Get:48 http://ftpmaster.internal/ubuntu plucky/main ppc64el libdebhelper-perl all 13.24.1ubuntu2 [95.4 kB]
181s Get:49 http://ftpmaster.internal/ubuntu plucky/main ppc64el libtool all 2.5.4-3build1 [168 kB]
181s Get:50 http://ftpmaster.internal/ubuntu plucky/main ppc64el dh-autoreconf all 20 [16.1 kB]
181s Get:51 http://ftpmaster.internal/ubuntu plucky/main ppc64el libarchive-zip-perl all 1.68-1 [90.2 kB]
181s Get:52 http://ftpmaster.internal/ubuntu plucky/main ppc64el libfile-stripnondeterminism-perl all 1.14.1-2 [20.3 kB]
181s Get:53 http://ftpmaster.internal/ubuntu plucky/main ppc64el dh-strip-nondeterminism all 1.14.1-2 [5064 B]
181s Get:54 http://ftpmaster.internal/ubuntu plucky/main ppc64el debugedit ppc64el 1:5.1-2 [52.4 kB]
181s Get:55 http://ftpmaster.internal/ubuntu plucky/main ppc64el dwz ppc64el 0.15-1build6 [142 kB]
181s Get:56 http://ftpmaster.internal/ubuntu plucky/main ppc64el gettext ppc64el 0.23.1-1 [1155 kB]
181s Get:57 http://ftpmaster.internal/ubuntu plucky/main ppc64el intltool-debian all 0.35.0+20060710.6 [23.2 kB]
181s Get:58 http://ftpmaster.internal/ubuntu plucky/main ppc64el po-debconf all 1.0.21+nmu1 [233 kB]
181s Get:59 http://ftpmaster.internal/ubuntu plucky/main ppc64el debhelper all 13.24.1ubuntu2 [895 kB]
181s Get:60 http://ftpmaster.internal/ubuntu plucky/universe ppc64el dh-python all 6.20250108 [117 kB]
181s Get:61 http://ftpmaster.internal/ubuntu plucky/main ppc64el xml-core all 0.19 [20.3 kB]
181s Get:62 http://ftpmaster.internal/ubuntu plucky/main ppc64el docutils-common all 0.21.2+dfsg-2 [131 kB]
181s Get:63 http://ftpmaster.internal/ubuntu plucky/main ppc64el fontconfig ppc64el 2.15.0-2ubuntu1 [192 kB]
181s Get:64 http://ftpmaster.internal/ubuntu plucky/universe ppc64el fonts-lyx all 2.4.3-1 [171 kB]
181s Get:65 http://ftpmaster.internal/ubuntu plucky/main ppc64el libblas3 ppc64el 3.12.1-2 [239 kB]
181s Get:66 http://ftpmaster.internal/ubuntu plucky/main ppc64el libpixman-1-0 ppc64el 0.44.0-3 [334 kB]
182s Get:67 http://ftpmaster.internal/ubuntu plucky/main ppc64el libxcb-render0 ppc64el 1.17.0-2 [17.2 kB]
182s Get:68 http://ftpmaster.internal/ubuntu plucky/main ppc64el libxcb-shm0 ppc64el 1.17.0-2 [5980 B]
182s Get:69 http://ftpmaster.internal/ubuntu plucky/main ppc64el libcairo2 ppc64el 1.18.2-2 [747 kB]
182s Get:70 http://ftpmaster.internal/ubuntu plucky/main ppc64el libdatrie1 ppc64el 0.2.13-3build1 [22.7 kB]
182s Get:71 http://ftpmaster.internal/ubuntu plucky/main ppc64el libdeflate0 ppc64el 1.23-1 [63.4 kB]
182s Get:72 http://ftpmaster.internal/ubuntu plucky/main ppc64el libexpat1-dev ppc64el 2.6.4-1 [149 kB]
182s Get:73 http://ftpmaster.internal/ubuntu plucky/main ppc64el libgfortran5 ppc64el 15-20250213-1ubuntu1 [613 kB]
182s Get:74 http://ftpmaster.internal/ubuntu plucky/main ppc64el libgraphite2-3 ppc64el 1.3.14-2ubuntu1 [84.6 kB]
182s Get:75 http://ftpmaster.internal/ubuntu plucky/main ppc64el libharfbuzz0b ppc64el 10.2.0-1 [598 kB]
182s Get:76 http://ftpmaster.internal/ubuntu plucky/universe ppc64el libhtscodecs2 ppc64el 1.6.1-2 [113 kB]
182s Get:77 http://ftpmaster.internal/ubuntu plucky/universe ppc64el libhts3t64 ppc64el 1.21+ds-1 [585 kB]
182s Get:78 http://ftpmaster.internal/ubuntu plucky/main ppc64el libice6 ppc64el 2:1.1.1-1 [49.9 kB]
182s Get:79 http://ftpmaster.internal/ubuntu plucky/main ppc64el libimagequant0 ppc64el 2.18.0-1build1 [43.2 kB]
182s Get:80 http://ftpmaster.internal/ubuntu plucky/main ppc64el libjpeg-turbo8 ppc64el 2.1.5-3ubuntu2 [215 kB]
182s Get:81 http://ftpmaster.internal/ubuntu plucky/main ppc64el libjpeg8 ppc64el 8c-2ubuntu11 [2148 B]
182s Get:82 http://ftpmaster.internal/ubuntu plucky/main ppc64el libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [328 kB]
182s Get:83 http://ftpmaster.internal/ubuntu plucky/universe ppc64el libjs-jquery-ui all 1.13.2+dfsg-1 [252 kB]
182s Get:84 http://ftpmaster.internal/ubuntu plucky/main ppc64el libjs-underscore all 1.13.4~dfsg+~1.11.4-3 [118 kB]
182s Get:85 http://ftpmaster.internal/ubuntu plucky-proposed/main ppc64el libjs-sphinxdoc all 8.1.3-5 [31.0 kB]
182s Get:86 http://ftpmaster.internal/ubuntu plucky/main ppc64el libjson-perl all 4.10000-1 [81.9 kB]
182s Get:87 http://ftpmaster.internal/ubuntu plucky/main ppc64el liblapack3 ppc64el 3.12.1-2 [2813 kB]
182s Get:88 http://ftpmaster.internal/ubuntu plucky/universe ppc64el liblbfgsb0 ppc64el 3.0+dfsg.4-1build1 [33.0 kB]
182s Get:89 http://ftpmaster.internal/ubuntu plucky/main ppc64el liblcms2-2 ppc64el 2.16-2 [243 kB]
182s Get:90 http://ftpmaster.internal/ubuntu plucky/main ppc64el liblerc4 ppc64el 4.0.0+ds-5ubuntu1 [298 kB]
182s Get:91 http://ftpmaster.internal/ubuntu plucky/main ppc64el libthai-data all 0.1.29-2build1 [158 kB]
182s Get:92 http://ftpmaster.internal/ubuntu plucky/main ppc64el libthai0 ppc64el 0.1.29-2build1 [21.8 kB]
182s Get:93 http://ftpmaster.internal/ubuntu plucky/main ppc64el libpango-1.0-0 ppc64el 1.56.1-1 [277 kB]
182s Get:94 http://ftpmaster.internal/ubuntu plucky/main ppc64el libpangoft2-1.0-0 ppc64el 1.56.1-1 [58.6 kB]
182s Get:95 http://ftpmaster.internal/ubuntu plucky/main ppc64el libpangocairo-1.0-0 ppc64el 1.56.1-1 [30.6 kB]
182s Get:96 http://ftpmaster.internal/ubuntu plucky/main ppc64el libpaper2 ppc64el 2.2.5-0.3 [18.0 kB]
182s Get:97 http://ftpmaster.internal/ubuntu plucky/main ppc64el libpaper-utils ppc64el 2.2.5-0.3 [15.6 kB]
182s Get:98 http://ftpmaster.internal/ubuntu plucky/main ppc64el zlib1g-dev ppc64el 1:1.3.dfsg+really1.3.1-1ubuntu1 [902 kB]
182s Get:99 http://ftpmaster.internal/ubuntu plucky/main ppc64el libpython3.13-dev ppc64el 3.13.2-1 [5971 kB]
182s Get:100 http://ftpmaster.internal/ubuntu plucky/main ppc64el libpython3-dev ppc64el 3.13.1-1~exp2 [10.5 kB]
182s Get:101 http://ftpmaster.internal/ubuntu plucky/main ppc64el libpython3.12-dev ppc64el 3.12.9-1 [6140 kB]
183s Get:102 http://ftpmaster.internal/ubuntu plucky/main ppc64el libpython3-all-dev ppc64el 3.13.1-1~exp2 [922 B]
183s Get:103 http://ftpmaster.internal/ubuntu plucky/universe ppc64el libqhull-r8.0 ppc64el 2020.2-6build1 [225 kB]
183s Get:104 http://ftpmaster.internal/ubuntu plucky/main ppc64el libraqm0 ppc64el 0.10.2-1 [19.2 kB]
183s Get:105 http://ftpmaster.internal/ubuntu plucky/main ppc64el libsharpyuv0 ppc64el 1.5.0-0.1 [22.3 kB]
183s Get:106 http://ftpmaster.internal/ubuntu plucky/main ppc64el libsm6 ppc64el 2:1.2.4-1 [18.4 kB]
183s Get:107 http://ftpmaster.internal/ubuntu plucky/main ppc64el libjbig0 ppc64el 2.1-6.1ubuntu2 [35.9 kB]
183s Get:108 http://ftpmaster.internal/ubuntu plucky/main ppc64el libwebp7 ppc64el 1.5.0-0.1 [315 kB]
184s Get:109 http://ftpmaster.internal/ubuntu plucky/main ppc64el libtiff6 ppc64el 4.5.1+git230720-4ubuntu4 [272 kB]
184s Get:110 http://ftpmaster.internal/ubuntu plucky/main ppc64el libwebpdemux2 ppc64el 1.5.0-0.1 [14.6 kB]
184s Get:111 http://ftpmaster.internal/ubuntu plucky/main ppc64el libwebpmux3 ppc64el 1.5.0-0.1 [31.1 kB]
184s Get:112 http://ftpmaster.internal/ubuntu plucky/main ppc64el libxslt1.1 ppc64el 1.1.39-0exp1ubuntu2 [191 kB]
184s Get:113 http://ftpmaster.internal/ubuntu plucky/main ppc64el libxt6t64 ppc64el 1:1.2.1-1.2build1 [202 kB]
184s Get:114 http://ftpmaster.internal/ubuntu plucky/main ppc64el python3-numpy ppc64el 1:1.26.4+ds-13 [5146 kB]
189s Get:115 http://ftpmaster.internal/ubuntu plucky/universe ppc64el python3-pysam ppc64el 0.23.0+ds-1 [4584 kB]
191s Get:116 http://ftpmaster.internal/ubuntu plucky/universe ppc64el python3-pybedtools ppc64el 0.10.0-4 [12.4 MB]
195s Get:117 http://ftpmaster.internal/ubuntu plucky/universe ppc64el pybedtools-bin all 0.10.0-4 [3214 B]
195s Get:118 http://ftpmaster.internal/ubuntu plucky/universe ppc64el pybuild-plugin-autopkgtest all 6.20250108 [1744 B]
195s Get:119 http://ftpmaster.internal/ubuntu plucky/main ppc64el python3-packaging all 24.2-1 [51.5 kB]
195s Get:120 http://ftpmaster.internal/ubuntu plucky/universe ppc64el python3-pyproject-hooks all 1.2.0-1 [10.2 kB]
195s Get:121 http://ftpmaster.internal/ubuntu plucky/universe ppc64el python3-toml all 0.10.2-1 [16.5 kB]
195s Get:122 http://ftpmaster.internal/ubuntu plucky/universe ppc64el python3-wheel all 0.45.1-1 [57.7 kB]
195s Get:123 http://ftpmaster.internal/ubuntu plucky/universe ppc64el python3-build all 1.2.2-1 [31.0 kB]
195s Get:124 http://ftpmaster.internal/ubuntu plucky/universe ppc64el python3-installer all 0.7.0+dfsg1-3 [17.4 kB]
195s Get:125 http://ftpmaster.internal/ubuntu plucky/universe ppc64el pybuild-plugin-pyproject all 6.20250108 [1726 B]
195s Get:126 http://ftpmaster.internal/ubuntu plucky/universe ppc64el python-matplotlib-data all 3.8.3-3ubuntu2 [2929 kB]
196s Get:127 http://ftpmaster.internal/ubuntu plucky/universe ppc64el python-pybedtools-doc all 0.10.0-4 [269 kB]
196s Get:128 http://ftpmaster.internal/ubuntu plucky/main ppc64el python3-all ppc64el 3.13.1-1~exp2 [896 B]
196s Get:129 http://ftpmaster.internal/ubuntu plucky/main ppc64el python3.13-dev ppc64el 3.13.2-1 [508 kB]
196s Get:130 http://ftpmaster.internal/ubuntu plucky/main ppc64el python3-dev ppc64el 3.13.1-1~exp2 [26.7 kB]
196s Get:131 http://ftpmaster.internal/ubuntu plucky/main ppc64el python3.12-dev ppc64el 3.12.9-1 [505 kB]
196s Get:132 http://ftpmaster.internal/ubuntu plucky/main ppc64el python3-all-dev ppc64el 3.13.1-1~exp2 [918 B]
196s Get:133 http://ftpmaster.internal/ubuntu plucky/universe ppc64el python3-brotli ppc64el 1.1.0-2build3 [423 kB]
196s Get:134 http://ftpmaster.internal/ubuntu plucky/universe ppc64el python3-contourpy ppc64el 1.3.1-1 [260 kB]
196s Get:135 http://ftpmaster.internal/ubuntu plucky/universe ppc64el python3-cycler all 0.12.1-1 [9716 B]
196s Get:136 http://ftpmaster.internal/ubuntu plucky/main ppc64el python3-dateutil all 2.9.0-3 [80.2 kB]
196s Get:137 http://ftpmaster.internal/ubuntu plucky/main ppc64el python3-decorator all 5.1.1-5 [10.1 kB]
196s Get:138 http://ftpmaster.internal/ubuntu plucky/main ppc64el python3-defusedxml all 0.7.1-3 [42.2 kB]
196s Get:139 http://ftpmaster.internal/ubuntu plucky/main ppc64el python3-roman all 5.0-1 [10.3 kB]
196s Get:140 http://ftpmaster.internal/ubuntu plucky/main ppc64el python3-docutils all 0.21.2+dfsg-2 [409 kB]
196s Get:141 http://ftpmaster.internal/ubuntu plucky/main ppc64el python3-pytz all 2025.1-3 [162 kB]
196s Get:142 http://ftpmaster.internal/ubuntu plucky/main ppc64el python3-tz all 2025.1-3 [1866 B]
196s Get:143 http://ftpmaster.internal/ubuntu plucky/main ppc64el python3-platformdirs all 4.3.6-1 [16.8 kB]
196s Get:144 http://ftpmaster.internal/ubuntu plucky/universe ppc64el python3-fs all 2.4.16-6 [90.7 kB]
196s Get:145 http://ftpmaster.internal/ubuntu plucky/main ppc64el python3-lxml ppc64el 5.3.1-1 [1752 kB]
196s Get:146 http://ftpmaster.internal/ubuntu plucky/universe ppc64el python3-lz4 ppc64el 4.4.0+dfsg-1 [28.3 kB]
196s Get:147 http://ftpmaster.internal/ubuntu plucky/universe ppc64el python3-scipy ppc64el 1.14.1-4ubuntu1 [22.7 MB]
199s Get:148 http://ftpmaster.internal/ubuntu plucky/universe ppc64el python3-mpmath all 1.3.0-1 [425 kB]
199s Get:149 http://ftpmaster.internal/ubuntu plucky/universe ppc64el python3-sympy all 1.13.3-1 [4228 kB]
199s Get:150 http://ftpmaster.internal/ubuntu plucky/universe ppc64el python3-ufolib2 all 0.17.0+dfsg1-1 [33.5 kB]
199s Get:151 http://ftpmaster.internal/ubuntu plucky/universe ppc64el unicode-data all 15.1.0-1 [8878 kB]
200s Get:152 http://ftpmaster.internal/ubuntu plucky/universe ppc64el python3-fonttools ppc64el 4.55.3-2 [1722 kB]
200s Get:153 http://ftpmaster.internal/ubuntu plucky/main ppc64el python3-imagesize all 1.4.1-1 [6844 B]
200s Get:154 http://ftpmaster.internal/ubuntu plucky/universe ppc64el python3-iniconfig all 1.1.1-2 [6024 B]
200s Get:155 http://ftpmaster.internal/ubuntu plucky/universe ppc64el python3-kiwisolver ppc64el 1.4.7-3 [73.2 kB]
200s Get:156 http://ftpmaster.internal/ubuntu plucky/main ppc64el libopenjp2-7 ppc64el 2.5.0-2ubuntu3 [247 kB]
200s Get:157 http://ftpmaster.internal/ubuntu plucky/main ppc64el python3-pil ppc64el 11.1.0-5 [618 kB]
200s Get:158 http://ftpmaster.internal/ubuntu plucky/main ppc64el python3.12-tk ppc64el 3.12.9-1 [116 kB]
200s Get:159 http://ftpmaster.internal/ubuntu plucky/main ppc64el python3.13-tk ppc64el 3.13.2-1 [107 kB]
200s Get:160 http://ftpmaster.internal/ubuntu plucky/main ppc64el python3-tk ppc64el 3.13.1-1 [9772 B]
200s Get:161 http://ftpmaster.internal/ubuntu plucky/universe ppc64el python3-pil.imagetk ppc64el 11.1.0-5 [10.4 kB]
200s Get:162 http://ftpmaster.internal/ubuntu plucky/universe ppc64el python3-matplotlib ppc64el 3.8.3-3ubuntu2 [4709 kB]
201s Get:163 http://ftpmaster.internal/ubuntu plucky-proposed/main ppc64el sphinx-common all 8.1.3-5 [663 kB]
201s Get:164 http://ftpmaster.internal/ubuntu plucky/main ppc64el python3-alabaster all 0.7.16-0.1 [18.5 kB]
201s Get:165 http://ftpmaster.internal/ubuntu plucky/main ppc64el python3-snowballstemmer all 2.2.0-4build1 [59.8 kB]
201s Get:166 http://ftpmaster.internal/ubuntu plucky-proposed/main ppc64el python3-sphinx all 8.1.3-5 [474 kB]
201s Get:167 http://ftpmaster.internal/ubuntu plucky/main ppc64el python3-tabulate all 0.9.0-1 [45.3 kB]
201s Get:168 http://ftpmaster.internal/ubuntu plucky/universe ppc64el python3-numpydoc all 1.8.0-1 [52.4 kB]
201s Get:169 http://ftpmaster.internal/ubuntu plucky/universe ppc64el python3-pandas-lib ppc64el 2.2.3+dfsg-8 [7343 kB]
201s Get:170 http://ftpmaster.internal/ubuntu plucky/universe ppc64el python3-pandas all 2.2.3+dfsg-8 [3112 kB]
202s Get:171 http://ftpmaster.internal/ubuntu plucky/universe ppc64el python3-pluggy all 1.5.0-1 [21.0 kB]
202s Get:172 http://ftpmaster.internal/ubuntu plucky/main ppc64el python3-psutil ppc64el 5.9.8-2build3 [197 kB]
202s Get:173 http://ftpmaster.internal/ubuntu plucky/universe ppc64el python3-pytest all 8.3.4-1 [252 kB]
202s Get:174 http://ftpmaster.internal/ubuntu plucky/main ppc64el zip ppc64el 3.0-14ubuntu2 [196 kB]
202s Get:175 http://ftpmaster.internal/ubuntu plucky/main ppc64el unzip ppc64el 6.0-28ubuntu6 [200 kB]
202s Get:176 http://ftpmaster.internal/ubuntu plucky/main ppc64el xdg-utils all 1.2.1-2ubuntu1 [66.0 kB]
202s Get:177 http://ftpmaster.internal/ubuntu plucky/universe ppc64el r-base-core ppc64el 4.4.2-1build1 [28.9 MB]
205s Preconfiguring packages ...
205s Fetched 213 MB in 28s (7703 kB/s)
205s Selecting previously unselected package python3.12-minimal.
205s (Reading database ... 
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(Reading database ... 106420 files and directories currently installed.)
205s Preparing to unpack .../000-python3.12-minimal_3.12.9-1_ppc64el.deb ...
205s Unpacking python3.12-minimal (3.12.9-1) ...
205s Selecting previously unselected package sgml-base.
205s Preparing to unpack .../001-sgml-base_1.31_all.deb ...
205s Unpacking sgml-base (1.31) ...
205s Selecting previously unselected package python3.12.
205s Preparing to unpack .../002-python3.12_3.12.9-1_ppc64el.deb ...
205s Unpacking python3.12 (3.12.9-1) ...
205s Selecting previously unselected package m4.
205s Preparing to unpack .../003-m4_1.4.19-5_ppc64el.deb ...
205s Unpacking m4 (1.4.19-5) ...
205s Selecting previously unselected package autoconf.
205s Preparing to unpack .../004-autoconf_2.72-3_all.deb ...
205s Unpacking autoconf (2.72-3) ...
205s Selecting previously unselected package autotools-dev.
205s Preparing to unpack .../005-autotools-dev_20220109.1_all.deb ...
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205s Selecting previously unselected package libtcl8.6:ppc64el.
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205s Selecting previously unselected package fonts-dejavu-mono.
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205s Selecting previously unselected package fontconfig-config.
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206s Selecting previously unselected package libfontconfig1:ppc64el.
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206s Selecting previously unselected package libxrender1:ppc64el.
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206s Selecting previously unselected package libxft2:ppc64el.
206s Preparing to unpack .../015-libxft2_2.3.6-1build1_ppc64el.deb ...
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206s Selecting previously unselected package x11-common.
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206s Selecting previously unselected package libxss1:ppc64el.
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206s Selecting previously unselected package libtk8.6:ppc64el.
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206s Selecting previously unselected package tk8.6-blt2.5.
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206s Selecting previously unselected package libisl23:ppc64el.
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206s Selecting previously unselected package libmpc3:ppc64el.
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206s Selecting previously unselected package cpp-14-powerpc64le-linux-gnu.
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206s Selecting previously unselected package cpp-powerpc64le-linux-gnu.
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206s Selecting previously unselected package cpp.
206s Preparing to unpack .../026-cpp_4%3a14.2.0-1ubuntu1_ppc64el.deb ...
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206s Selecting previously unselected package libcc1-0:ppc64el.
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206s Selecting previously unselected package libitm1:ppc64el.
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206s Selecting previously unselected package libasan8:ppc64el.
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206s Selecting previously unselected package liblsan0:ppc64el.
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207s Selecting previously unselected package libubsan1:ppc64el.
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207s Selecting previously unselected package libquadmath0:ppc64el.
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207s Selecting previously unselected package libgcc-14-dev:ppc64el.
207s Preparing to unpack .../035-libgcc-14-dev_14.2.0-17ubuntu1_ppc64el.deb ...
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207s Selecting previously unselected package gcc-14-powerpc64le-linux-gnu.
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207s Selecting previously unselected package gcc-14.
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207s Selecting previously unselected package gcc-powerpc64le-linux-gnu.
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207s Unpacking gcc-powerpc64le-linux-gnu (4:14.2.0-1ubuntu1) ...
207s Selecting previously unselected package gcc.
207s Preparing to unpack .../039-gcc_4%3a14.2.0-1ubuntu1_ppc64el.deb ...
207s Unpacking gcc (4:14.2.0-1ubuntu1) ...
207s Selecting previously unselected package libstdc++-14-dev:ppc64el.
207s Preparing to unpack .../040-libstdc++-14-dev_14.2.0-17ubuntu1_ppc64el.deb ...
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208s Selecting previously unselected package g++-14-powerpc64le-linux-gnu.
208s Preparing to unpack .../041-g++-14-powerpc64le-linux-gnu_14.2.0-17ubuntu1_ppc64el.deb ...
208s Unpacking g++-14-powerpc64le-linux-gnu (14.2.0-17ubuntu1) ...
208s Selecting previously unselected package g++-14.
208s Preparing to unpack .../042-g++-14_14.2.0-17ubuntu1_ppc64el.deb ...
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208s Selecting previously unselected package g++-powerpc64le-linux-gnu.
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208s Unpacking g++-powerpc64le-linux-gnu (4:14.2.0-1ubuntu1) ...
208s Selecting previously unselected package g++.
208s Preparing to unpack .../044-g++_4%3a14.2.0-1ubuntu1_ppc64el.deb ...
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208s Selecting previously unselected package build-essential.
208s Preparing to unpack .../045-build-essential_12.10ubuntu1_ppc64el.deb ...
208s Unpacking build-essential (12.10ubuntu1) ...
208s Selecting previously unselected package cython3.
208s Preparing to unpack .../046-cython3_3.0.11+dfsg-2ubuntu1_ppc64el.deb ...
208s Unpacking cython3 (3.0.11+dfsg-2ubuntu1) ...
208s Selecting previously unselected package libdebhelper-perl.
208s Preparing to unpack .../047-libdebhelper-perl_13.24.1ubuntu2_all.deb ...
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208s Selecting previously unselected package libtool.
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208s Selecting previously unselected package dh-autoreconf.
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208s Selecting previously unselected package libarchive-zip-perl.
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208s Selecting previously unselected package libfile-stripnondeterminism-perl.
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208s Selecting previously unselected package dh-strip-nondeterminism.
208s Preparing to unpack .../052-dh-strip-nondeterminism_1.14.1-2_all.deb ...
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208s Selecting previously unselected package debugedit.
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208s Selecting previously unselected package dwz.
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208s Selecting previously unselected package intltool-debian.
208s Preparing to unpack .../056-intltool-debian_0.35.0+20060710.6_all.deb ...
208s Unpacking intltool-debian (0.35.0+20060710.6) ...
208s Selecting previously unselected package po-debconf.
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209s Selecting previously unselected package debhelper.
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209s Selecting previously unselected package dh-python.
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209s Selecting previously unselected package xml-core.
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209s Selecting previously unselected package fontconfig.
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209s Selecting previously unselected package fonts-lyx.
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209s Selecting previously unselected package libblas3:ppc64el.
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209s Selecting previously unselected package libpixman-1-0:ppc64el.
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209s Selecting previously unselected package libcairo2:ppc64el.
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209s Selecting previously unselected package libdatrie1:ppc64el.
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209s Selecting previously unselected package libexpat1-dev:ppc64el.
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209s Selecting previously unselected package libgfortran5:ppc64el.
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209s Selecting previously unselected package libgraphite2-3:ppc64el.
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209s Selecting previously unselected package libimagequant0:ppc64el.
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209s Selecting previously unselected package libjpeg-turbo8:ppc64el.
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209s Selecting previously unselected package libjs-jquery.
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209s Selecting previously unselected package libjs-underscore.
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209s Selecting previously unselected package libjs-sphinxdoc.
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210s Selecting previously unselected package libjson-perl.
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210s Unpacking libjson-perl (4.10000-1) ...
210s Selecting previously unselected package liblapack3:ppc64el.
210s Preparing to unpack .../086-liblapack3_3.12.1-2_ppc64el.deb ...
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210s Selecting previously unselected package liblbfgsb0:ppc64el.
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210s Selecting previously unselected package liblcms2-2:ppc64el.
210s Preparing to unpack .../088-liblcms2-2_2.16-2_ppc64el.deb ...
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210s Selecting previously unselected package liblerc4:ppc64el.
210s Preparing to unpack .../089-liblerc4_4.0.0+ds-5ubuntu1_ppc64el.deb ...
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210s Selecting previously unselected package libthai-data.
210s Preparing to unpack .../090-libthai-data_0.1.29-2build1_all.deb ...
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210s Selecting previously unselected package libthai0:ppc64el.
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210s Selecting previously unselected package libpango-1.0-0:ppc64el.
210s Preparing to unpack .../092-libpango-1.0-0_1.56.1-1_ppc64el.deb ...
210s Unpacking libpango-1.0-0:ppc64el (1.56.1-1) ...
210s Selecting previously unselected package libpangoft2-1.0-0:ppc64el.
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210s Selecting previously unselected package libpangocairo-1.0-0:ppc64el.
210s Preparing to unpack .../094-libpangocairo-1.0-0_1.56.1-1_ppc64el.deb ...
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210s Selecting previously unselected package libpaper2:ppc64el.
210s Preparing to unpack .../095-libpaper2_2.2.5-0.3_ppc64el.deb ...
210s Unpacking libpaper2:ppc64el (2.2.5-0.3) ...
210s Selecting previously unselected package libpaper-utils.
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210s Selecting previously unselected package zlib1g-dev:ppc64el.
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210s Unpacking zlib1g-dev:ppc64el (1:1.3.dfsg+really1.3.1-1ubuntu1) ...
210s Selecting previously unselected package libpython3.13-dev:ppc64el.
210s Preparing to unpack .../098-libpython3.13-dev_3.13.2-1_ppc64el.deb ...
210s Unpacking libpython3.13-dev:ppc64el (3.13.2-1) ...
210s Selecting previously unselected package libpython3-dev:ppc64el.
210s Preparing to unpack .../099-libpython3-dev_3.13.1-1~exp2_ppc64el.deb ...
210s Unpacking libpython3-dev:ppc64el (3.13.1-1~exp2) ...
210s Selecting previously unselected package libpython3.12-dev:ppc64el.
210s Preparing to unpack .../100-libpython3.12-dev_3.12.9-1_ppc64el.deb ...
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211s Selecting previously unselected package libpython3-all-dev:ppc64el.
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211s Unpacking libpython3-all-dev:ppc64el (3.13.1-1~exp2) ...
211s Selecting previously unselected package libqhull-r8.0:ppc64el.
211s Preparing to unpack .../102-libqhull-r8.0_2020.2-6build1_ppc64el.deb ...
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211s Selecting previously unselected package libraqm0:ppc64el.
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211s Selecting previously unselected package libsharpyuv0:ppc64el.
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211s Selecting previously unselected package libjbig0:ppc64el.
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211s Unpacking libjbig0:ppc64el (2.1-6.1ubuntu2) ...
211s Selecting previously unselected package libwebp7:ppc64el.
211s Preparing to unpack .../107-libwebp7_1.5.0-0.1_ppc64el.deb ...
211s Unpacking libwebp7:ppc64el (1.5.0-0.1) ...
211s Selecting previously unselected package libtiff6:ppc64el.
211s Preparing to unpack .../108-libtiff6_4.5.1+git230720-4ubuntu4_ppc64el.deb ...
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211s Selecting previously unselected package libwebpdemux2:ppc64el.
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211s Selecting previously unselected package libwebpmux3:ppc64el.
211s Preparing to unpack .../110-libwebpmux3_1.5.0-0.1_ppc64el.deb ...
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211s Selecting previously unselected package libxslt1.1:ppc64el.
211s Preparing to unpack .../111-libxslt1.1_1.1.39-0exp1ubuntu2_ppc64el.deb ...
211s Unpacking libxslt1.1:ppc64el (1.1.39-0exp1ubuntu2) ...
211s Selecting previously unselected package libxt6t64:ppc64el.
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211s Unpacking libxt6t64:ppc64el (1:1.2.1-1.2build1) ...
211s Selecting previously unselected package python3-numpy.
211s Preparing to unpack .../113-python3-numpy_1%3a1.26.4+ds-13_ppc64el.deb ...
211s Unpacking python3-numpy (1:1.26.4+ds-13) ...
211s Selecting previously unselected package python3-pysam.
211s Preparing to unpack .../114-python3-pysam_0.23.0+ds-1_ppc64el.deb ...
211s Unpacking python3-pysam (0.23.0+ds-1) ...
212s Selecting previously unselected package python3-pybedtools.
212s Preparing to unpack .../115-python3-pybedtools_0.10.0-4_ppc64el.deb ...
212s Unpacking python3-pybedtools (0.10.0-4) ...
212s Selecting previously unselected package pybedtools-bin.
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212s Unpacking pybedtools-bin (0.10.0-4) ...
212s Selecting previously unselected package pybuild-plugin-autopkgtest.
212s Preparing to unpack .../117-pybuild-plugin-autopkgtest_6.20250108_all.deb ...
212s Unpacking pybuild-plugin-autopkgtest (6.20250108) ...
212s Selecting previously unselected package python3-packaging.
212s Preparing to unpack .../118-python3-packaging_24.2-1_all.deb ...
212s Unpacking python3-packaging (24.2-1) ...
212s Selecting previously unselected package python3-pyproject-hooks.
212s Preparing to unpack .../119-python3-pyproject-hooks_1.2.0-1_all.deb ...
212s Unpacking python3-pyproject-hooks (1.2.0-1) ...
212s Selecting previously unselected package python3-toml.
212s Preparing to unpack .../120-python3-toml_0.10.2-1_all.deb ...
212s Unpacking python3-toml (0.10.2-1) ...
212s Selecting previously unselected package python3-wheel.
212s Preparing to unpack .../121-python3-wheel_0.45.1-1_all.deb ...
212s Unpacking python3-wheel (0.45.1-1) ...
212s Selecting previously unselected package python3-build.
212s Preparing to unpack .../122-python3-build_1.2.2-1_all.deb ...
212s Unpacking python3-build (1.2.2-1) ...
212s Selecting previously unselected package python3-installer.
212s Preparing to unpack .../123-python3-installer_0.7.0+dfsg1-3_all.deb ...
212s Unpacking python3-installer (0.7.0+dfsg1-3) ...
212s Selecting previously unselected package pybuild-plugin-pyproject.
212s Preparing to unpack .../124-pybuild-plugin-pyproject_6.20250108_all.deb ...
212s Unpacking pybuild-plugin-pyproject (6.20250108) ...
212s Selecting previously unselected package python-matplotlib-data.
212s Preparing to unpack .../125-python-matplotlib-data_3.8.3-3ubuntu2_all.deb ...
212s Unpacking python-matplotlib-data (3.8.3-3ubuntu2) ...
212s Selecting previously unselected package python-pybedtools-doc.
212s Preparing to unpack .../126-python-pybedtools-doc_0.10.0-4_all.deb ...
212s Unpacking python-pybedtools-doc (0.10.0-4) ...
212s Selecting previously unselected package python3-all.
212s Preparing to unpack .../127-python3-all_3.13.1-1~exp2_ppc64el.deb ...
212s Unpacking python3-all (3.13.1-1~exp2) ...
212s Selecting previously unselected package python3.13-dev.
212s Preparing to unpack .../128-python3.13-dev_3.13.2-1_ppc64el.deb ...
212s Unpacking python3.13-dev (3.13.2-1) ...
212s Selecting previously unselected package python3-dev.
212s Preparing to unpack .../129-python3-dev_3.13.1-1~exp2_ppc64el.deb ...
212s Unpacking python3-dev (3.13.1-1~exp2) ...
212s Selecting previously unselected package python3.12-dev.
212s Preparing to unpack .../130-python3.12-dev_3.12.9-1_ppc64el.deb ...
212s Unpacking python3.12-dev (3.12.9-1) ...
212s Selecting previously unselected package python3-all-dev.
212s Preparing to unpack .../131-python3-all-dev_3.13.1-1~exp2_ppc64el.deb ...
212s Unpacking python3-all-dev (3.13.1-1~exp2) ...
212s Selecting previously unselected package python3-brotli.
212s Preparing to unpack .../132-python3-brotli_1.1.0-2build3_ppc64el.deb ...
212s Unpacking python3-brotli (1.1.0-2build3) ...
212s Selecting previously unselected package python3-contourpy.
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212s Unpacking python3-contourpy (1.3.1-1) ...
212s Selecting previously unselected package python3-cycler.
212s Preparing to unpack .../134-python3-cycler_0.12.1-1_all.deb ...
212s Unpacking python3-cycler (0.12.1-1) ...
212s Selecting previously unselected package python3-dateutil.
212s Preparing to unpack .../135-python3-dateutil_2.9.0-3_all.deb ...
212s Unpacking python3-dateutil (2.9.0-3) ...
212s Selecting previously unselected package python3-decorator.
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213s Unpacking python3-decorator (5.1.1-5) ...
213s Selecting previously unselected package python3-defusedxml.
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213s Unpacking python3-defusedxml (0.7.1-3) ...
213s Selecting previously unselected package python3-roman.
213s Preparing to unpack .../138-python3-roman_5.0-1_all.deb ...
213s Unpacking python3-roman (5.0-1) ...
213s Selecting previously unselected package python3-docutils.
213s Preparing to unpack .../139-python3-docutils_0.21.2+dfsg-2_all.deb ...
213s Unpacking python3-docutils (0.21.2+dfsg-2) ...
213s Selecting previously unselected package python3-pytz.
213s Preparing to unpack .../140-python3-pytz_2025.1-3_all.deb ...
213s Unpacking python3-pytz (2025.1-3) ...
213s Selecting previously unselected package python3-tz.
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213s Unpacking python3-tz (2025.1-3) ...
213s Selecting previously unselected package python3-platformdirs.
213s Preparing to unpack .../142-python3-platformdirs_4.3.6-1_all.deb ...
213s Unpacking python3-platformdirs (4.3.6-1) ...
213s Selecting previously unselected package python3-fs.
213s Preparing to unpack .../143-python3-fs_2.4.16-6_all.deb ...
213s Unpacking python3-fs (2.4.16-6) ...
213s Selecting previously unselected package python3-lxml:ppc64el.
213s Preparing to unpack .../144-python3-lxml_5.3.1-1_ppc64el.deb ...
213s Unpacking python3-lxml:ppc64el (5.3.1-1) ...
213s Selecting previously unselected package python3-lz4.
213s Preparing to unpack .../145-python3-lz4_4.4.0+dfsg-1_ppc64el.deb ...
213s Unpacking python3-lz4 (4.4.0+dfsg-1) ...
213s Selecting previously unselected package python3-scipy.
213s Preparing to unpack .../146-python3-scipy_1.14.1-4ubuntu1_ppc64el.deb ...
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214s Selecting previously unselected package python3-mpmath.
214s Preparing to unpack .../147-python3-mpmath_1.3.0-1_all.deb ...
214s Unpacking python3-mpmath (1.3.0-1) ...
214s Selecting previously unselected package python3-sympy.
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214s Unpacking python3-sympy (1.13.3-1) ...
215s Selecting previously unselected package python3-ufolib2.
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215s Unpacking python3-ufolib2 (0.17.0+dfsg1-1) ...
215s Selecting previously unselected package unicode-data.
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215s Unpacking unicode-data (15.1.0-1) ...
215s Selecting previously unselected package python3-fonttools.
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215s Unpacking python3-fonttools (4.55.3-2) ...
215s Selecting previously unselected package python3-imagesize.
215s Preparing to unpack .../152-python3-imagesize_1.4.1-1_all.deb ...
215s Unpacking python3-imagesize (1.4.1-1) ...
215s Selecting previously unselected package python3-iniconfig.
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215s Unpacking python3-iniconfig (1.1.1-2) ...
215s Selecting previously unselected package python3-kiwisolver.
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215s Unpacking python3-kiwisolver (1.4.7-3) ...
215s Selecting previously unselected package libopenjp2-7:ppc64el.
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215s Unpacking libopenjp2-7:ppc64el (2.5.0-2ubuntu3) ...
215s Selecting previously unselected package python3-pil:ppc64el.
215s Preparing to unpack .../156-python3-pil_11.1.0-5_ppc64el.deb ...
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215s Selecting previously unselected package python3.12-tk.
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215s Selecting previously unselected package python3-tk:ppc64el.
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215s Selecting previously unselected package python3-pil.imagetk:ppc64el.
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215s Selecting previously unselected package python3-matplotlib.
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216s Selecting previously unselected package sphinx-common.
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216s Selecting previously unselected package python3-alabaster.
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216s Selecting previously unselected package python3-sphinx.
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216s Selecting previously unselected package python3-tabulate.
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216s Selecting previously unselected package python3-numpydoc.
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216s Selecting previously unselected package python3-pandas-lib:ppc64el.
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216s Selecting previously unselected package python3-pandas.
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217s Selecting previously unselected package python3-psutil.
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217s Selecting previously unselected package python3-pytest.
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217s Selecting previously unselected package zip.
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217s Selecting previously unselected package xdg-utils.
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217s Selecting previously unselected package r-base-core.
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218s Setting up libhtscodecs2:ppc64el (1.6.1-2) ...
218s Setting up dh-python (6.20250108) ...
218s Setting up libgraphite2-3:ppc64el (1.3.14-2ubuntu1) ...
218s Setting up liblcms2-2:ppc64el (2.16-2) ...
218s Setting up python3-iniconfig (1.1.1-2) ...
218s Setting up libpixman-1-0:ppc64el (0.44.0-3) ...
218s Setting up python3.12-minimal (3.12.9-1) ...
220s Setting up libsharpyuv0:ppc64el (1.5.0-0.1) ...
220s Setting up liblerc4:ppc64el (4.0.0+ds-5ubuntu1) ...
220s Setting up libxrender1:ppc64el (1:0.9.10-1.1build1) ...
220s Setting up libdatrie1:ppc64el (0.2.13-3build1) ...
220s Setting up python3-lz4 (4.4.0+dfsg-1) ...
220s Setting up libxcb-render0:ppc64el (1.17.0-2) ...
220s Setting up python3-defusedxml (0.7.1-3) ...
221s Setting up libarchive-zip-perl (1.68-1) ...
221s Setting up python3-alabaster (0.7.16-0.1) ...
221s Setting up fonts-lyx (2.4.3-1) ...
221s Setting up unzip (6.0-28ubuntu6) ...
221s Setting up libdebhelper-perl (13.24.1ubuntu2) ...
221s Setting up python3.12 (3.12.9-1) ...
224s Setting up x11-common (1:7.7+23ubuntu3) ...
224s Setting up libdeflate0:ppc64el (1.23-1) ...
224s Setting up python3-tabulate (0.9.0-1) ...
225s Setting up m4 (1.4.19-5) ...
225s Setting up libqhull-r8.0:ppc64el (2020.2-6build1) ...
225s Setting up python3-all (3.13.1-1~exp2) ...
225s Setting up python3-pytz (2025.1-3) ...
225s Setting up libxcb-shm0:ppc64el (1.17.0-2) ...
225s Setting up libgomp1:ppc64el (15-20250213-1ubuntu1) ...
225s Setting up python3-wheel (0.45.1-1) ...
225s Setting up libjbig0:ppc64el (2.1-6.1ubuntu2) ...
225s Setting up python3-platformdirs (4.3.6-1) ...
226s Setting up python3-psutil (5.9.8-2build3) ...
227s Setting up python3-tz (2025.1-3) ...
227s Setting up python3-fs (2.4.16-6) ...
227s Setting up unicode-data (15.1.0-1) ...
227s Setting up python3-roman (5.0-1) ...
228s Setting up python3-decorator (5.1.1-5) ...
228s Setting up zip (3.0-14ubuntu2) ...
228s Setting up autotools-dev (20220109.1) ...
228s Setting up libblas3:ppc64el (3.12.1-2) ...
228s update-alternatives: using /usr/lib/powerpc64le-linux-gnu/blas/libblas.so.3 to provide /usr/lib/powerpc64le-linux-gnu/libblas.so.3 (libblas.so.3-powerpc64le-linux-gnu) in auto mode
228s Setting up python3-packaging (24.2-1) ...
228s Setting up libexpat1-dev:ppc64el (2.6.4-1) ...
228s Setting up python3-pyproject-hooks (1.2.0-1) ...
229s Setting up python3-snowballstemmer (2.2.0-4build1) ...
230s Setting up python3-brotli (1.1.0-2build3) ...
230s Setting up libquadmath0:ppc64el (15-20250213-1ubuntu1) ...
230s Setting up python3-cycler (0.12.1-1) ...
230s Setting up libimagequant0:ppc64el (2.18.0-1build1) ...
230s Setting up fonts-dejavu-mono (2.37-8) ...
230s Setting up python3-kiwisolver (1.4.7-3) ...
230s Setting up libmpc3:ppc64el (1.3.1-1build2) ...
230s Setting up cython3 (3.0.11+dfsg-2ubuntu1) ...
233s Setting up libtcl8.6:ppc64el (8.6.16+dfsg-1) ...
233s Setting up autopoint (0.23.1-1) ...
233s Setting up fonts-dejavu-core (2.37-8) ...
233s Setting up libjpeg-turbo8:ppc64el (2.1.5-3ubuntu2) ...
233s Setting up python3-toml (0.10.2-1) ...
234s Setting up python3-installer (0.7.0+dfsg1-3) ...
234s Setting up libgfortran5:ppc64el (15-20250213-1ubuntu1) ...
234s Setting up autoconf (2.72-3) ...
234s Setting up python3-pluggy (1.5.0-1) ...
234s Setting up libwebp7:ppc64el (1.5.0-0.1) ...
234s Setting up libubsan1:ppc64el (15-20250213-1ubuntu1) ...
234s Setting up zlib1g-dev:ppc64el (1:1.3.dfsg+really1.3.1-1ubuntu1) ...
234s Setting up dwz (0.15-1build6) ...
234s Setting up libasan8:ppc64el (15-20250213-1ubuntu1) ...
234s Setting up libjson-perl (4.10000-1) ...
234s Setting up libxslt1.1:ppc64el (1.1.39-0exp1ubuntu2) ...
234s Setting up debugedit (1:5.1-2) ...
234s Setting up libhts3t64:ppc64el (1.21+ds-1) ...
234s Setting up libopenjp2-7:ppc64el (2.5.0-2ubuntu3) ...
234s Setting up libharfbuzz0b:ppc64el (10.2.0-1) ...
234s Setting up libthai-data (0.1.29-2build1) ...
234s Setting up python3-dateutil (2.9.0-3) ...
234s Setting up sgml-base (1.31) ...
234s Setting up libxss1:ppc64el (1:1.2.3-1build3) ...
234s Setting up libpaper2:ppc64el (2.2.5-0.3) ...
235s Setting up libtsan2:ppc64el (15-20250213-1ubuntu1) ...
235s Setting up libjs-jquery (3.6.1+dfsg+~3.5.14-1) ...
235s Setting up python3-mpmath (1.3.0-1) ...
236s Setting up libisl23:ppc64el (0.27-1) ...
236s Setting up python3-build (1.2.2-1) ...
237s Setting up python-matplotlib-data (3.8.3-3ubuntu2) ...
237s Setting up libwebpmux3:ppc64el (1.5.0-0.1) ...
237s Setting up xdg-utils (1.2.1-2ubuntu1) ...
237s update-alternatives: using /usr/bin/xdg-open to provide /usr/bin/open (open) in auto mode
237s Setting up bedtools (2.31.1+dfsg-2) ...
237s Setting up libcc1-0:ppc64el (15-20250213-1ubuntu1) ...
237s Setting up liblsan0:ppc64el (15-20250213-1ubuntu1) ...
237s Setting up libitm1:ppc64el (15-20250213-1ubuntu1) ...
237s Setting up libjs-underscore (1.13.4~dfsg+~1.11.4-3) ...
237s Setting up python3-imagesize (1.4.1-1) ...
237s Setting up libjpeg8:ppc64el (8c-2ubuntu11) ...
237s Setting up automake (1:1.17-3) ...
237s update-alternatives: using /usr/bin/automake-1.17 to provide /usr/bin/automake (automake) in auto mode
237s Setting up libfile-stripnondeterminism-perl (1.14.1-2) ...
237s Setting up python3-sympy (1.13.3-1) ...
263s Setting up libice6:ppc64el (2:1.1.1-1) ...
263s Setting up liblapack3:ppc64el (3.12.1-2) ...
263s update-alternatives: using /usr/lib/powerpc64le-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/powerpc64le-linux-gnu/liblapack.so.3 (liblapack.so.3-powerpc64le-linux-gnu) in auto mode
263s Setting up gettext (0.23.1-1) ...
263s Setting up python3-pysam (0.23.0+ds-1) ...
263s Setting up pybuild-plugin-pyproject (6.20250108) ...
263s Setting up fontconfig-config (2.15.0-2ubuntu1) ...
264s Setting up python3-pytest (8.3.4-1) ...
265s Setting up libwebpdemux2:ppc64el (1.5.0-0.1) ...
265s Setting up libpython3.12-dev:ppc64el (3.12.9-1) ...
265s Setting up libpaper-utils (2.2.5-0.3) ...
265s Setting up intltool-debian (0.35.0+20060710.6) ...
265s Setting up libthai0:ppc64el (0.1.29-2build1) ...
265s Setting up libjs-jquery-ui (1.13.2+dfsg-1) ...
265s Setting up libraqm0:ppc64el (0.10.2-1) ...
265s Setting up libpython3.13-dev:ppc64el (3.13.2-1) ...
265s Setting up python3.12-dev (3.12.9-1) ...
265s Setting up cpp-14-powerpc64le-linux-gnu (14.2.0-17ubuntu1) ...
265s Setting up python3-numpy (1:1.26.4+ds-13) ...
273s Setting up libjs-sphinxdoc (8.1.3-5) ...
273s Setting up cpp-14 (14.2.0-17ubuntu1) ...
273s Setting up dh-strip-nondeterminism (1.14.1-2) ...
273s Setting up python3-lxml:ppc64el (5.3.1-1) ...
274s Setting up libtiff6:ppc64el (4.5.1+git230720-4ubuntu4) ...
274s Setting up xml-core (0.19) ...
274s Setting up python3-contourpy (1.3.1-1) ...
274s Setting up libfontconfig1:ppc64el (2.15.0-2ubuntu1) ...
274s Setting up libgcc-14-dev:ppc64el (14.2.0-17ubuntu1) ...
274s Setting up libstdc++-14-dev:ppc64el (14.2.0-17ubuntu1) ...
274s Setting up libsm6:ppc64el (2:1.2.4-1) ...
274s Setting up cpp-powerpc64le-linux-gnu (4:14.2.0-1ubuntu1) ...
274s Setting up gcc-14-powerpc64le-linux-gnu (14.2.0-17ubuntu1) ...
274s Setting up liblbfgsb0:ppc64el (3.0+dfsg.4-1build1) ...
274s Setting up fontconfig (2.15.0-2ubuntu1) ...
276s Regenerating fonts cache... done.
276s Setting up python3-pybedtools (0.10.0-4) ...
277s Setting up libxft2:ppc64el (2.3.6-1build1) ...
277s Setting up python3-scipy (1.14.1-4ubuntu1) ...
289s Setting up libpython3-dev:ppc64el (3.13.1-1~exp2) ...
289s Setting up g++-14-powerpc64le-linux-gnu (14.2.0-17ubuntu1) ...
289s Setting up python-pybedtools-doc (0.10.0-4) ...
289s Setting up python3.13-dev (3.13.2-1) ...
289s Setting up po-debconf (1.0.21+nmu1) ...
289s Setting up libtk8.6:ppc64el (8.6.16-1) ...
289s Setting up python3-pandas-lib:ppc64el (2.2.3+dfsg-8) ...
289s Setting up libpango-1.0-0:ppc64el (1.56.1-1) ...
289s Setting up python3.12-tk (3.12.9-1) ...
289s Setting up pybedtools-bin (0.10.0-4) ...
289s Setting up libcairo2:ppc64el (1.18.2-2) ...
289s Setting up python3.13-tk (3.13.2-1) ...
289s Setting up gcc-14 (14.2.0-17ubuntu1) ...
289s Setting up python3-pil:ppc64el (11.1.0-5) ...
290s Setting up python3-pandas (2.2.3+dfsg-8) ...
306s Setting up gcc-powerpc64le-linux-gnu (4:14.2.0-1ubuntu1) ...
306s Setting up libpython3-all-dev:ppc64el (3.13.1-1~exp2) ...
306s Setting up sphinx-common (8.1.3-5) ...
306s Setting up python3-dev (3.13.1-1~exp2) ...
306s Setting up libxt6t64:ppc64el (1:1.2.1-1.2build1) ...
306s Setting up cpp (4:14.2.0-1ubuntu1) ...
306s Setting up g++-14 (14.2.0-17ubuntu1) ...
306s Setting up libpangoft2-1.0-0:ppc64el (1.56.1-1) ...
306s Setting up libpangocairo-1.0-0:ppc64el (1.56.1-1) ...
306s Setting up g++-powerpc64le-linux-gnu (4:14.2.0-1ubuntu1) ...
306s Setting up python3-all-dev (3.13.1-1~exp2) ...
306s Setting up tk8.6-blt2.5 (2.5.3+dfsg-7build1) ...
306s Setting up libtool (2.5.4-3build1) ...
306s Setting up blt (2.5.3+dfsg-7build1) ...
306s Setting up python3-tk:ppc64el (3.13.1-1) ...
306s Setting up gcc (4:14.2.0-1ubuntu1) ...
306s Setting up dh-autoreconf (20) ...
306s Setting up python3-pil.imagetk:ppc64el (11.1.0-5) ...
306s Setting up r-base-core (4.4.2-1build1) ...
307s Creating config file /etc/R/Renviron with new version
307s Setting up g++ (4:14.2.0-1ubuntu1) ...
307s update-alternatives: using /usr/bin/g++ to provide /usr/bin/c++ (c++) in auto mode
307s Setting up build-essential (12.10ubuntu1) ...
307s Setting up debhelper (13.24.1ubuntu2) ...
307s Setting up pybuild-plugin-autopkgtest (6.20250108) ...
307s Setting up python3-ufolib2 (0.17.0+dfsg1-1) ...
307s Setting up python3-fonttools (4.55.3-2) ...
311s Setting up python3-matplotlib (3.8.3-3ubuntu2) ...
317s Processing triggers for libc-bin (2.40-4ubuntu1) ...
317s Processing triggers for systemd (257.2-3ubuntu1) ...
317s Processing triggers for man-db (2.13.0-1) ...
320s Processing triggers for install-info (7.1.1-1) ...
320s Processing triggers for sgml-base (1.31) ...
320s Setting up docutils-common (0.21.2+dfsg-2) ...
320s Processing triggers for sgml-base (1.31) ...
320s Setting up python3-docutils (0.21.2+dfsg-2) ...
322s Setting up python3-sphinx (8.1.3-5) ...
324s Setting up python3-numpydoc (1.8.0-1) ...
326s autopkgtest [21:02:50]: test pybuild-autopkgtest: pybuild-autopkgtest
326s autopkgtest [21:02:50]: test pybuild-autopkgtest: [-----------------------
326s pybuild-autopkgtest
327s I: pybuild base:311: cd /tmp/autopkgtest.9LcAkR/autopkgtest_tmp/build; python3.12 -m pytest -k "not test_chromsizes" --pyargs pybedtools
329s ============================= test session starts ==============================
329s platform linux -- Python 3.12.9, pytest-8.3.4, pluggy-1.5.0
329s rootdir: /tmp/autopkgtest.9LcAkR/autopkgtest_tmp/build
329s configfile: pyproject.toml
329s plugins: typeguard-4.4.1
329s collected 511 items / 2 deselected / 509 selected
329s 
335s test/test_1.py ......................................................... [ 11%]
337s ............x..x.x......                                                 [ 15%]
337s test/test_cbedtools.py .......................................           [ 23%]
338s test/test_contrib.py ..                                                  [ 23%]
338s test/test_gzip_support.py ........                                       [ 25%]
338s test/test_helpers.py ......                                              [ 26%]
341s test/test_issues.py ...........................................          [ 35%]
342s test/test_iter.py ...................................................... [ 45%]
342s ........................................................................ [ 59%]
346s ........................................................................ [ 74%]
347s ........................................................................ [ 88%]
347s .........................................................                [ 99%]
347s test/test_pathlib.py ...                                                 [100%]
347s 
347s ================ 506 passed, 2 deselected, 3 xfailed in 19.73s =================
347s I: pybuild pybuild:334: cd /tmp/autopkgtest.9LcAkR/build.dXI/src/docs ; PYTHONPATH=/tmp/autopkgtest.9LcAkR/autopkgtest_tmp/build python3.12 -m sphinx -b doctest -d build/doctrees   source build/doctest
348s Running Sphinx v8.1.3
349s loading translations [en]... done
350s making output directory... done
350s Converting `source_suffix = '.rst'` to `source_suffix = {'.rst': 'restructuredtext'}`.
350s [autosummary] generating autosummary for: 3-brief-examples.rst, FAQs.rst, autodoc_source.rst, autodocs/pybedtools.contrib.plotting.Track.rst, changes.rst, create-a-bedtool-tutorial.rst, default-arguments.rst, each.rst, filtering.rst, flow-of-commands.rst, ..., topical-create-a-bedtool.rst, topical-design-principles.rst, topical-documentation-contents.rst, topical-genome.rst, topical-iterators.rst, topical-low-level-ops.rst, topical-random.rst, topical-saving.rst, topical-wrapping.rst, tutorial-contents.rst
354s [autosummary] generating autosummary for: /tmp/autopkgtest.9LcAkR/build.dXI/src/docs/source/autodocs/pybedtools.bedtool.BedTool.absolute_distance.rst, /tmp/autopkgtest.9LcAkR/build.dXI/src/docs/source/autodocs/pybedtools.bedtool.BedTool.all_hits.rst, /tmp/autopkgtest.9LcAkR/build.dXI/src/docs/source/autodocs/pybedtools.bedtool.BedTool.annotate.rst, /tmp/autopkgtest.9LcAkR/build.dXI/src/docs/source/autodocs/pybedtools.bedtool.BedTool.any_hits.rst, /tmp/autopkgtest.9LcAkR/build.dXI/src/docs/source/autodocs/pybedtools.bedtool.BedTool.as_intervalfile.rst, /tmp/autopkgtest.9LcAkR/build.dXI/src/docs/source/autodocs/pybedtools.bedtool.BedTool.at.rst, /tmp/autopkgtest.9LcAkR/build.dXI/src/docs/source/autodocs/pybedtools.bedtool.BedTool.bam_to_bed.rst, /tmp/autopkgtest.9LcAkR/build.dXI/src/docs/source/autodocs/pybedtools.bedtool.BedTool.bam_to_fastq.rst, /tmp/autopkgtest.9LcAkR/build.dXI/src/docs/source/autodocs/pybedtools.bedtool.BedTool.bed6.rst, /tmp/autopkgtest.9LcAkR/build.dXI/src/docs/source/autodocs/pybedtools.bedtool.BedTool.bedpe_to_bam.rst, ..., /tmp/autopkgtest.9LcAkR/build.dXI/src/docs/source/autodocs/pybedtools.helpers.set_tempdir.rst, /tmp/autopkgtest.9LcAkR/build.dXI/src/docs/source/autodocs/pybedtools.parallel.parallel_apply.rst, /tmp/autopkgtest.9LcAkR/build.dXI/src/docs/source/pybedtools.featurefuncs.add_color.rst, /tmp/autopkgtest.9LcAkR/build.dXI/src/docs/source/pybedtools.featurefuncs.bedgraph_scale.rst, /tmp/autopkgtest.9LcAkR/build.dXI/src/docs/source/pybedtools.featurefuncs.extend_fields.rst, /tmp/autopkgtest.9LcAkR/build.dXI/src/docs/source/pybedtools.featurefuncs.five_prime.rst, /tmp/autopkgtest.9LcAkR/build.dXI/src/docs/source/pybedtools.featurefuncs.greater_than.rst, /tmp/autopkgtest.9LcAkR/build.dXI/src/docs/source/pybedtools.featurefuncs.less_than.rst, /tmp/autopkgtest.9LcAkR/build.dXI/src/docs/source/pybedtools.featurefuncs.normalized_to_length.rst, /tmp/autopkgtest.9LcAkR/build.dXI/src/docs/source/pybedtools.featurefuncs.three_prime.rst
354s building [mo]: targets for 0 po files that are out of date
354s writing output... 
354s building [doctest]: targets for 49 source files that are out of date
354s updating environment: [new config] 157 added, 0 changed, 0 removed
354s reading sources... [  1%] 3-brief-examples
354s reading sources... [  1%] FAQs
354s reading sources... [  2%] autodoc_source
355s /usr/lib/python3/dist-packages/numpydoc/docscrape.py:421: UserWarning: Unknown section Example in the docstring of decorated in /usr/lib/python3/dist-packages/pybedtools/bedtool.py.
355s   self[section] = content
356s /usr/lib/python3/dist-packages/numpydoc/docscrape.py:421: UserWarning: Unknown section Example in the docstring of tag_bedpe in /usr/lib/python3/dist-packages/pybedtools/contrib/long_range_interaction.py.
356s   self[section] = content
356s reading sources... [  3%] autodocs/pybedtools.bedtool.BedTool
358s /usr/lib/python3/dist-packages/numpydoc/docscrape.py:421: UserWarning: Unknown section Example in the docstring of decorated in /usr/lib/python3/dist-packages/pybedtools/bedtool.py.
358s   self[section] = content
359s reading sources... [  3%] autodocs/pybedtools.bedtool.BedTool.absolute_distance
359s reading sources... [  4%] autodocs/pybedtools.bedtool.BedTool.all_hits
359s reading sources... [  4%] autodocs/pybedtools.bedtool.BedTool.annotate
359s reading sources... [  5%] autodocs/pybedtools.bedtool.BedTool.any_hits
359s reading sources... [  6%] autodocs/pybedtools.bedtool.BedTool.as_intervalfile
359s reading sources... [  6%] autodocs/pybedtools.bedtool.BedTool.at
359s reading sources... [  7%] autodocs/pybedtools.bedtool.BedTool.bam_to_bed
359s reading sources... [  8%] autodocs/pybedtools.bedtool.BedTool.bam_to_fastq
359s reading sources... [  8%] autodocs/pybedtools.bedtool.BedTool.bed6
359s reading sources... [  9%] autodocs/pybedtools.bedtool.BedTool.bedpe_to_bam
359s reading sources... [ 10%] autodocs/pybedtools.bedtool.BedTool.bgzip
359s reading sources... [ 10%] autodocs/pybedtools.bedtool.BedTool.cat
359s reading sources... [ 11%] autodocs/pybedtools.bedtool.BedTool.closest
359s reading sources... [ 11%] autodocs/pybedtools.bedtool.BedTool.cluster
359s reading sources... [ 12%] autodocs/pybedtools.bedtool.BedTool.colormap_normalize
359s reading sources... [ 13%] autodocs/pybedtools.bedtool.BedTool.complement
359s reading sources... [ 13%] autodocs/pybedtools.bedtool.BedTool.count
359s reading sources... [ 14%] autodocs/pybedtools.bedtool.BedTool.count_hits
359s reading sources... [ 15%] autodocs/pybedtools.bedtool.BedTool.coverage
359s reading sources... [ 15%] autodocs/pybedtools.bedtool.BedTool.cut
360s reading sources... [ 16%] autodocs/pybedtools.bedtool.BedTool.each
360s reading sources... [ 17%] autodocs/pybedtools.bedtool.BedTool.expand
360s reading sources... [ 17%] autodocs/pybedtools.bedtool.BedTool.field_count
360s reading sources... [ 18%] autodocs/pybedtools.bedtool.BedTool.file_type
360s reading sources... [ 18%] autodocs/pybedtools.bedtool.BedTool.filter
360s reading sources... [ 19%] autodocs/pybedtools.bedtool.BedTool.flank
360s reading sources... [ 20%] autodocs/pybedtools.bedtool.BedTool.genome_coverage
360s reading sources... [ 20%] autodocs/pybedtools.bedtool.BedTool.groupby
360s reading sources... [ 21%] autodocs/pybedtools.bedtool.BedTool.head
360s reading sources... [ 22%] autodocs/pybedtools.bedtool.BedTool.igv
360s reading sources... [ 22%] autodocs/pybedtools.bedtool.BedTool.intersect
360s reading sources... [ 23%] autodocs/pybedtools.bedtool.BedTool.introns
360s reading sources... [ 24%] autodocs/pybedtools.bedtool.BedTool.jaccard
360s reading sources... [ 24%] autodocs/pybedtools.bedtool.BedTool.liftover
360s reading sources... [ 25%] autodocs/pybedtools.bedtool.BedTool.links
360s reading sources... [ 25%] autodocs/pybedtools.bedtool.BedTool.map
360s reading sources... [ 26%] autodocs/pybedtools.bedtool.BedTool.mask_fasta
360s reading sources... [ 27%] autodocs/pybedtools.bedtool.BedTool.merge
360s reading sources... [ 27%] autodocs/pybedtools.bedtool.BedTool.moveto
360s reading sources... [ 28%] autodocs/pybedtools.bedtool.BedTool.multi_bam_coverage
360s reading sources... [ 29%] autodocs/pybedtools.bedtool.BedTool.multi_intersect
360s reading sources... [ 29%] autodocs/pybedtools.bedtool.BedTool.nucleotide_content
360s reading sources... [ 30%] autodocs/pybedtools.bedtool.BedTool.overlap
360s reading sources... [ 31%] autodocs/pybedtools.bedtool.BedTool.pair_to_bed
360s reading sources... [ 31%] autodocs/pybedtools.bedtool.BedTool.pair_to_pair
360s reading sources... [ 32%] autodocs/pybedtools.bedtool.BedTool.parallel_apply
360s reading sources... [ 32%] autodocs/pybedtools.bedtool.BedTool.print_sequence
360s reading sources... [ 33%] autodocs/pybedtools.bedtool.BedTool.random
360s reading sources... [ 34%] autodocs/pybedtools.bedtool.BedTool.random_jaccard
360s reading sources... [ 34%] autodocs/pybedtools.bedtool.BedTool.random_op
360s reading sources... [ 35%] autodocs/pybedtools.bedtool.BedTool.random_subset
360s /usr/lib/python3/dist-packages/numpydoc/docscrape.py:421: UserWarning: Unknown section Example in the docstring of decorated in /usr/lib/python3/dist-packages/pybedtools/bedtool.py.
360s   self[section] = content
360s reading sources... [ 36%] autodocs/pybedtools.bedtool.BedTool.randomintersection
360s reading sources... [ 36%] autodocs/pybedtools.bedtool.BedTool.randomintersection_bp
360s reading sources... [ 37%] autodocs/pybedtools.bedtool.BedTool.randomstats
361s reading sources... [ 38%] autodocs/pybedtools.bedtool.BedTool.relative_distance
361s reading sources... [ 38%] autodocs/pybedtools.bedtool.BedTool.reldist
361s reading sources... [ 39%] autodocs/pybedtools.bedtool.BedTool.remove_invalid
361s reading sources... [ 39%] autodocs/pybedtools.bedtool.BedTool.save_seqs
361s reading sources... [ 40%] autodocs/pybedtools.bedtool.BedTool.saveas
361s reading sources... [ 41%] autodocs/pybedtools.bedtool.BedTool.seq
361s reading sources... [ 41%] autodocs/pybedtools.bedtool.BedTool.sequence
361s reading sources... [ 42%] autodocs/pybedtools.bedtool.BedTool.set_chromsizes
361s reading sources... [ 43%] autodocs/pybedtools.bedtool.BedTool.shuffle
361s reading sources... [ 43%] autodocs/pybedtools.bedtool.BedTool.slop
361s reading sources... [ 44%] autodocs/pybedtools.bedtool.BedTool.sort
361s reading sources... [ 45%] autodocs/pybedtools.bedtool.BedTool.split
361s reading sources... [ 45%] autodocs/pybedtools.bedtool.BedTool.subtract
361s reading sources... [ 46%] autodocs/pybedtools.bedtool.BedTool.tabix
361s reading sources... [ 46%] autodocs/pybedtools.bedtool.BedTool.tabix_intervals
361s reading sources... [ 47%] autodocs/pybedtools.bedtool.BedTool.tag_bam
361s reading sources... [ 48%] autodocs/pybedtools.bedtool.BedTool.to_bam
361s reading sources... [ 48%] autodocs/pybedtools.bedtool.BedTool.total_coverage
361s reading sources... [ 49%] autodocs/pybedtools.bedtool.BedTool.truncate_to_chrom
361s reading sources... [ 50%] autodocs/pybedtools.bedtool.BedTool.union_bedgraphs
361s reading sources... [ 50%] autodocs/pybedtools.bedtool.BedTool.window
361s reading sources... [ 51%] autodocs/pybedtools.bedtool.BedTool.window_maker
361s reading sources... [ 52%] autodocs/pybedtools.bedtool.BedTool.with_attrs
361s reading sources... [ 52%] autodocs/pybedtools.bedtool.example_bedtool
361s reading sources... [ 53%] autodocs/pybedtools.cbedtools.Interval
361s reading sources... [ 54%] autodocs/pybedtools.cbedtools.create_interval_from_list
361s reading sources... [ 54%] autodocs/pybedtools.contrib.IntersectionMatrix
361s reading sources... [ 55%] autodocs/pybedtools.contrib.bigbed.bigbed
361s reading sources... [ 55%] autodocs/pybedtools.contrib.bigbed.bigbed_to_bed
361s reading sources... [ 56%] autodocs/pybedtools.contrib.bigwig.bam_to_bigwig
361s reading sources... [ 57%] autodocs/pybedtools.contrib.bigwig.bedgraph_to_bigwig
362s reading sources... [ 57%] autodocs/pybedtools.contrib.bigwig.wig_to_bigwig
362s reading sources... [ 58%] autodocs/pybedtools.contrib.long_range_interaction.cis_trans_interactions
362s reading sources... [ 59%] autodocs/pybedtools.contrib.long_range_interaction.tag_bedpe
362s /usr/lib/python3/dist-packages/numpydoc/docscrape.py:421: UserWarning: Unknown section Example in the docstring of tag_bedpe in /usr/lib/python3/dist-packages/pybedtools/contrib/long_range_interaction.py.
362s   self[section] = content
362s reading sources... [ 59%] autodocs/pybedtools.contrib.plotting.BedToolsDemo
362s reading sources... [ 60%] autodocs/pybedtools.contrib.plotting.ConfiguredBedToolsDemo
362s reading sources... [ 61%] autodocs/pybedtools.contrib.plotting.Track
365s reading sources... [ 61%] autodocs/pybedtools.contrib.plotting.TrackCollection
366s reading sources... [ 62%] autodocs/pybedtools.contrib.plotting.binary_heatmap
366s reading sources... [ 62%] autodocs/pybedtools.contrib.plotting.binary_summary
366s reading sources... [ 63%] autodocs/pybedtools.contrib.venn_maker
366s reading sources... [ 64%] autodocs/pybedtools.contrib.venn_maker.cleaned_intersect
366s reading sources... [ 64%] autodocs/pybedtools.contrib.venn_maker.venn_maker
366s reading sources... [ 65%] autodocs/pybedtools.debug_mode
366s reading sources... [ 66%] autodocs/pybedtools.filenames.example_filename
366s reading sources... [ 66%] autodocs/pybedtools.filenames.list_example_files
366s reading sources... [ 67%] autodocs/pybedtools.helpers.chromsizes
366s reading sources... [ 68%] autodocs/pybedtools.helpers.chromsizes_to_file
366s reading sources... [ 68%] autodocs/pybedtools.helpers.cleanup
366s reading sources... [ 69%] autodocs/pybedtools.helpers.get_chromsizes_from_ucsc
366s reading sources... [ 69%] autodocs/pybedtools.helpers.get_tempdir
366s reading sources... [ 70%] autodocs/pybedtools.helpers.set_bedtools_path
366s reading sources... [ 71%] autodocs/pybedtools.helpers.set_tempdir
366s reading sources... [ 71%] autodocs/pybedtools.parallel.parallel_apply
366s reading sources... [ 72%] changes
366s reading sources... [ 73%] create-a-bedtool-tutorial
366s reading sources... [ 73%] default-arguments
366s reading sources... [ 74%] each
366s reading sources... [ 75%] filtering
366s reading sources... [ 75%] flow-of-commands
366s reading sources... [ 76%] history
367s reading sources... [ 76%] includeme
367s reading sources... [ 77%] index
367s reading sources... [ 78%] intersections
367s reading sources... [ 78%] intervals
367s reading sources... [ 79%] intro
367s reading sources... [ 80%] main
367s reading sources... [ 80%] piping
367s reading sources... [ 81%] pybedtools-dev-history
367s reading sources... [ 82%] pybedtools.featurefuncs.TSS
367s reading sources... [ 82%] pybedtools.featurefuncs.add_color
367s reading sources... [ 83%] pybedtools.featurefuncs.bed2gff
367s reading sources... [ 83%] pybedtools.featurefuncs.bedgraph_scale
367s reading sources... [ 84%] pybedtools.featurefuncs.center
367s reading sources... [ 85%] pybedtools.featurefuncs.extend_fields
367s reading sources... [ 85%] pybedtools.featurefuncs.five_prime
367s reading sources... [ 86%] pybedtools.featurefuncs.gff2bed
367s reading sources... [ 87%] pybedtools.featurefuncs.greater_than
367s reading sources... [ 87%] pybedtools.featurefuncs.less_than
367s reading sources... [ 88%] pybedtools.featurefuncs.midpoint
367s reading sources... [ 89%] pybedtools.featurefuncs.normalized_to_length
367s reading sources... [ 89%] pybedtools.featurefuncs.rename
367s reading sources... [ 90%] pybedtools.featurefuncs.three_prime
367s reading sources... [ 90%] save-results
368s reading sources... [ 91%] scripts
368s reading sources... [ 92%] sh-comparison
368s reading sources... [ 92%] topical-bam
368s reading sources... [ 93%] topical-bam-semantics
368s reading sources... [ 94%] topical-comparisons
368s reading sources... [ 94%] topical-create-a-bedtool
368s reading sources... [ 95%] topical-design-principles
368s reading sources... [ 96%] topical-documentation-contents
368s reading sources... [ 96%] topical-genome
368s reading sources... [ 97%] topical-iterators
368s reading sources... [ 97%] topical-low-level-ops
368s reading sources... [ 98%] topical-random
368s reading sources... [ 99%] topical-saving
368s reading sources... [ 99%] topical-wrapping
368s reading sources... [100%] tutorial-contents
368s 
368s WARNING: Summarised items should not include the current module. Replace 'pybedtools.bedtool.BedTool' with 'bedtool.BedTool'. [autosummary.import_cycle]
368s WARNING: Summarised items should not include the current module. Replace 'pybedtools.bedtool.BedTool.intersect' with 'bedtool.BedTool.intersect'. [autosummary.import_cycle]
368s WARNING: Summarised items should not include the current module. Replace 'pybedtools.bedtool.BedTool.window' with 'bedtool.BedTool.window'. [autosummary.import_cycle]
368s WARNING: Summarised items should not include the current module. Replace 'pybedtools.bedtool.BedTool.closest' with 'bedtool.BedTool.closest'. [autosummary.import_cycle]
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368s checking consistency... /tmp/autopkgtest.9LcAkR/build.dXI/src/docs/source/pybedtools.featurefuncs.normalized_to_length.rst: document is referenced in multiple toctrees: ['autodoc_source', 'autodoc_source'], selecting: autodoc_source <- pybedtools.featurefuncs.normalized_to_length
368s /tmp/autopkgtest.9LcAkR/build.dXI/src/docs/source/pybedtools.featurefuncs.rename.rst: document is referenced in multiple toctrees: ['autodoc_source', 'autodoc_source'], selecting: autodoc_source <- pybedtools.featurefuncs.rename
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368s /tmp/autopkgtest.9LcAkR/build.dXI/src/docs/source/topical-genome.rst:55: ERROR: Unknown target name: "genomepy<https://github.com/vanheeringen-lab/genomepy/>". [docutils]
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371s Document: autodocs/pybedtools.bedtool.BedTool.overlap
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371s Document: autodocs/pybedtools.bedtool.BedTool.randomintersection
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371s Document: autodocs/pybedtools.bedtool.BedTool.randomstats
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372s Document: autodocs/pybedtools.bedtool.BedTool.remove_invalid
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372s Document: autodocs/pybedtools.bedtool.BedTool.save_seqs
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372s Document: autodocs/pybedtools.bedtool.BedTool.saveas
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372s Document: autodocs/pybedtools.bedtool.BedTool.set_chromsizes
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372s Document: autodocs/pybedtools.bedtool.BedTool.shuffle
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372s Document: autodocs/pybedtools.bedtool.BedTool.total_coverage
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372s Document: autodocs/pybedtools.bedtool.BedTool.with_attrs
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372s Document: autodocs/pybedtools.cbedtools.Interval
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372s Document: autodocs/pybedtools.contrib.long_range_interaction.cis_trans_interactions
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373s Document: autodocs/pybedtools.contrib.plotting.Track
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373s Document: autodocs/pybedtools.filenames.list_example_files
373s ----------------------------------------------------------
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373s Document: autodocs/pybedtools.helpers.chromsizes
373s ------------------------------------------------
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373s Document: autodocs/pybedtools.parallel.parallel_apply
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373s Document: default-arguments
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373s Document: each
373s --------------
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373s Document: filtering
373s -------------------
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373s Document: history
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373s Document: intersections
373s -----------------------
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373s Document: intervals
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373s Document: save-results
373s ----------------------
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373s Document: topical-bam
373s ---------------------
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377s Document: topical-create-a-bedtool
377s ----------------------------------
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377s Document: topical-design-principles
377s -----------------------------------
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377s 
377s Document: topical-genome
377s ------------------------
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377s Document: topical-iterators
377s ---------------------------
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377s Document: topical-low-level-ops
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377s Document: topical-random
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379s Document: topical-saving
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379s Doctest summary
379s ===============
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379s     0 failures in tests
379s     0 failures in setup code
379s     0 failures in cleanup code
379s build succeeded, 126 warnings.
379s 
379s Testing of doctests in the sources finished, look at the results in build/doctest/output.txt.
379s I: pybuild base:311: cd /tmp/autopkgtest.9LcAkR/autopkgtest_tmp/build; python3.13 -m pytest -k "not test_chromsizes" --pyargs pybedtools
381s ============================= test session starts ==============================
381s platform linux -- Python 3.13.2, pytest-8.3.4, pluggy-1.5.0
381s rootdir: /tmp/autopkgtest.9LcAkR/autopkgtest_tmp/build
381s configfile: pyproject.toml
381s plugins: typeguard-4.4.1
381s collected 511 items / 2 deselected / 509 selected
381s 
387s test/test_1.py ......................................................... [ 11%]
389s ............x..x.x......                                                 [ 15%]
389s test/test_cbedtools.py .......................................           [ 23%]
390s test/test_contrib.py ..                                                  [ 23%]
390s test/test_gzip_support.py ........                                       [ 25%]
390s test/test_helpers.py ......                                              [ 26%]
394s test/test_issues.py ...........................................          [ 35%]
394s test/test_iter.py ...................................................... [ 45%]
394s ........................................................................ [ 59%]
398s ........................................................................ [ 74%]
399s ........................................................................ [ 88%]
399s .........................................................                [ 99%]
399s test/test_pathlib.py ...                                                 [100%]
399s 
399s ================ 506 passed, 2 deselected, 3 xfailed in 19.25s =================
400s I: pybuild pybuild:334: cd /tmp/autopkgtest.9LcAkR/build.dXI/src/docs ; PYTHONPATH=/tmp/autopkgtest.9LcAkR/autopkgtest_tmp/build python3.13 -m sphinx -b doctest -d build/doctrees   source build/doctest
400s Running Sphinx v8.1.3
400s loading translations [en]... done
401s Converting `source_suffix = '.rst'` to `source_suffix = {'.rst': 'restructuredtext'}`.
401s loading pickled environment... done
401s [autosummary] generating autosummary for: 3-brief-examples.rst, FAQs.rst, autodoc_source.rst, autodocs/pybedtools.bedtool.BedTool.absolute_distance.rst, autodocs/pybedtools.bedtool.BedTool.all_hits.rst, autodocs/pybedtools.bedtool.BedTool.annotate.rst, autodocs/pybedtools.bedtool.BedTool.any_hits.rst, autodocs/pybedtools.bedtool.BedTool.as_intervalfile.rst, autodocs/pybedtools.bedtool.BedTool.at.rst, autodocs/pybedtools.bedtool.BedTool.bam_to_bed.rst, ..., topical-create-a-bedtool.rst, topical-design-principles.rst, topical-documentation-contents.rst, topical-genome.rst, topical-iterators.rst, topical-low-level-ops.rst, topical-random.rst, topical-saving.rst, topical-wrapping.rst, tutorial-contents.rst
404s building [mo]: targets for 0 po files that are out of date
404s writing output... 
404s building [doctest]: targets for 157 source files that are out of date
404s updating environment: 0 added, 0 changed, 0 removed
404s reading sources... 
404s looking for now-outdated files... none found
404s preparing documents... done
404s copying assets... 
404s copying assets: done
404s running tests...
404s 
404s Document: autodocs/pybedtools.bedtool.BedTool.annotate
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406s Document: autodocs/pybedtools.bedtool.BedTool.randomintersection
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407s Document: autodocs/pybedtools.bedtool.BedTool.total_coverage
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407s Document: autodocs/pybedtools.cbedtools.Interval
407s ------------------------------------------------
407s 1 item passed all tests:
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407s Document: autodocs/pybedtools.cbedtools.create_interval_from_list
407s -----------------------------------------------------------------
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407s Document: autodocs/pybedtools.contrib.long_range_interaction.cis_trans_interactions
407s -----------------------------------------------------------------------------------
407s 1 item passed all tests:
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407s 18 passed.
407s Test passed.
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407s Document: autodocs/pybedtools.contrib.plotting.Track
407s ----------------------------------------------------
407s 1 item passed all tests:
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407s Test passed.
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408s Document: autodocs/pybedtools.filenames.list_example_files
408s ----------------------------------------------------------
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408s 
408s Document: autodocs/pybedtools.helpers.chromsizes
408s ------------------------------------------------
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408s Test passed.
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408s Document: autodocs/pybedtools.parallel.parallel_apply
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408s Test passed.
408s 
408s Document: default-arguments
408s ---------------------------
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408s 13 passed.
408s Test passed.
408s 
408s Document: each
408s --------------
408s 1 item passed all tests:
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408s 6 passed.
408s Test passed.
408s 
408s Document: filtering
408s -------------------
408s 1 item passed all tests:
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408s 8 passed.
408s Test passed.
408s 
408s Document: history
408s -----------------
408s 1 item passed all tests:
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408s Test passed.
408s 
408s Document: intersections
408s -----------------------
408s 1 item passed all tests:
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408s 8 tests in 1 item.
408s 8 passed.
408s Test passed.
408s 
408s Document: intervals
408s -------------------
408s 1 item passed all tests:
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408s 50 tests in 1 item.
408s 50 passed.
408s Test passed.
408s 
408s Document: piping
408s ----------------
408s 1 item passed all tests:
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408s 17 tests in 1 item.
408s 17 passed.
408s Test passed.
408s 
408s Document: save-results
408s ----------------------
408s 1 item passed all tests:
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408s 8 tests in 1 item.
408s 8 passed.
408s Test passed.
408s 
408s Document: topical-bam
408s ---------------------
412s 1 item passed all tests:
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412s 15 passed.
412s Test passed.
412s 
412s Document: topical-create-a-bedtool
412s ----------------------------------
412s 1 item passed all tests:
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412s Test passed.
412s 
412s Document: topical-design-principles
412s -----------------------------------
412s 1 item passed all tests:
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412s 15 passed.
412s Test passed.
412s 
412s Document: topical-genome
412s ------------------------
412s 1 item passed all tests:
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412s Test passed.
412s 
412s Document: topical-iterators
412s ---------------------------
412s 1 item passed all tests:
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412s 20 tests in 1 item.
412s 20 passed.
412s Test passed.
412s 
412s Document: topical-low-level-ops
412s -------------------------------
412s 1 item passed all tests:
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412s 6 passed.
412s Test passed.
412s 
412s Document: topical-random
412s ------------------------
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414s 10 passed.
414s Test passed.
414s 
414s Document: topical-saving
414s ------------------------
414s 1 item passed all tests:
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414s 14 passed.
414s Test passed.
414s 
414s Doctest summary
414s ===============
414s   387 tests
414s     0 failures in tests
414s     0 failures in setup code
414s     0 failures in cleanup code
414s build succeeded.
414s 
414s Testing of doctests in the sources finished, look at the results in build/doctest/output.txt.
415s autopkgtest [21:04:19]: test pybuild-autopkgtest: -----------------------]
415s autopkgtest [21:04:19]: test pybuild-autopkgtest:  - - - - - - - - - - results - - - - - - - - - -
415s pybuild-autopkgtest  PASS
416s autopkgtest [21:04:20]: @@@@@@@@@@@@@@@@@@@@ summary
416s pybuild-autopkgtest  PASS
437s nova [W] Using flock in prodstack6-ppc64el
437s Creating nova instance adt-plucky-ppc64el-python-pybedtools-20250219-205724-juju-7f2275-prod-proposed-migration-environment-15-2440f74c-f81e-4b77-a46a-a88aefa1207b from image adt/ubuntu-plucky-ppc64el-server-20250218.img (UUID 9318aa34-3d3c-43c5-86d2-aaf9390f2f5d)...
437s nova [W] Timed out waiting for b83e3478-72ce-4104-a0fb-4081c2981543 to get deleted.