0s autopkgtest [20:54:03]: starting date and time: 2024-11-15 20:54:03+0000 0s autopkgtest [20:54:03]: git checkout: 6f3be7a8 Fix armhf LXD image generation for plucky 0s autopkgtest [20:54:03]: host juju-7f2275-prod-proposed-migration-environment-20; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.a_sqyf9x/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:scikit-learn --apt-upgrade python-pauvre --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=scikit-learn/1.4.2+dfsg-6build1 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest-ppc64el --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-20@bos03-ppc64el-6.secgroup --name adt-plucky-ppc64el-python-pauvre-20241115-205403-juju-7f2275-prod-proposed-migration-environment-20-64cc8c42-cd9d-4deb-b2ff-32afd9d20c28 --image adt/ubuntu-plucky-ppc64el-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-20 --net-id=net_prod-proposed-migration-ppc64el -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,keyserver.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/ 69s autopkgtest [20:55:12]: testbed dpkg architecture: ppc64el 70s autopkgtest [20:55:13]: testbed apt version: 2.9.8 70s autopkgtest [20:55:13]: @@@@@@@@@@@@@@@@@@@@ test bed setup 70s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease [73.9 kB] 71s Get:2 http://ftpmaster.internal/ubuntu plucky-proposed/universe Sources [1044 kB] 71s Get:3 http://ftpmaster.internal/ubuntu plucky-proposed/main Sources [93.0 kB] 71s Get:4 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse Sources [15.5 kB] 71s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/restricted Sources [7016 B] 71s Get:6 http://ftpmaster.internal/ubuntu plucky-proposed/main ppc64el Packages [153 kB] 71s Get:7 http://ftpmaster.internal/ubuntu plucky-proposed/universe ppc64el Packages [782 kB] 71s Get:8 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse ppc64el Packages [8932 B] 71s Fetched 2176 kB in 1s (2358 kB/s) 71s Reading package lists... 74s Reading package lists... 74s Building dependency tree... 74s Reading state information... 74s Calculating upgrade... 74s The following NEW packages will be installed: 74s libassuan9 74s The following packages will be upgraded: 74s bpfcc-tools bpftrace firmware-sof-signed grub-common grub-ieee1275 74s grub-ieee1275-bin grub2-common libbpfcc libcap-ng0 libexpat1 libgnutls30t64 74s libgpgme11t64 libjson-glib-1.0-0 libjson-glib-1.0-common libnewt0.52 74s libseccomp2 libutempter0 lxd-installer man-db pastebinit python3-bpfcc 74s python3-cffi-backend python3-markupsafe python3-newt python3-systemd 74s whiptail xfsprogs 74s 27 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. 74s Need to get 18.5 MB of archives. 74s After this operation, 1531 kB of additional disk space will be used. 74s Get:1 http://ftpmaster.internal/ubuntu plucky/main ppc64el firmware-sof-signed all 2024.06-1ubuntu2 [7083 kB] 75s Get:2 http://ftpmaster.internal/ubuntu plucky/main ppc64el libcap-ng0 ppc64el 0.8.5-3build1 [16.3 kB] 75s Get:3 http://ftpmaster.internal/ubuntu plucky/main ppc64el libgnutls30t64 ppc64el 3.8.8-2ubuntu1 [1072 kB] 75s Get:4 http://ftpmaster.internal/ubuntu plucky/main ppc64el libseccomp2 ppc64el 2.5.5-1ubuntu5 [61.6 kB] 75s Get:5 http://ftpmaster.internal/ubuntu plucky/main ppc64el libexpat1 ppc64el 2.6.4-1 [98.1 kB] 75s Get:6 http://ftpmaster.internal/ubuntu plucky/main ppc64el python3-newt ppc64el 0.52.24-2ubuntu4 [21.8 kB] 75s Get:7 http://ftpmaster.internal/ubuntu plucky/main ppc64el libnewt0.52 ppc64el 0.52.24-2ubuntu4 [62.1 kB] 75s Get:8 http://ftpmaster.internal/ubuntu plucky/main ppc64el python3-cffi-backend ppc64el 1.17.1-2build1 [108 kB] 75s Get:9 http://ftpmaster.internal/ubuntu plucky/main ppc64el whiptail ppc64el 0.52.24-2ubuntu4 [19.5 kB] 75s Get:10 http://ftpmaster.internal/ubuntu plucky/main ppc64el man-db ppc64el 2.13.0-1 [1361 kB] 75s Get:11 http://ftpmaster.internal/ubuntu plucky/main ppc64el libbpfcc ppc64el 0.30.0+ds-1ubuntu5 [696 kB] 75s Get:12 http://ftpmaster.internal/ubuntu plucky/main ppc64el python3-bpfcc all 0.30.0+ds-1ubuntu5 [40.4 kB] 75s Get:13 http://ftpmaster.internal/ubuntu plucky/main ppc64el bpfcc-tools all 0.30.0+ds-1ubuntu5 [697 kB] 76s Get:14 http://ftpmaster.internal/ubuntu plucky/main ppc64el bpftrace ppc64el 0.21.2-2ubuntu2 [1898 kB] 76s Get:15 http://ftpmaster.internal/ubuntu plucky/main ppc64el grub-ieee1275 ppc64el 2.12-5ubuntu7 [63.1 kB] 76s Get:16 http://ftpmaster.internal/ubuntu plucky/main ppc64el grub2-common ppc64el 2.12-5ubuntu7 [751 kB] 76s Get:17 http://ftpmaster.internal/ubuntu plucky/main ppc64el grub-ieee1275-bin ppc64el 2.12-5ubuntu7 [689 kB] 76s Get:18 http://ftpmaster.internal/ubuntu plucky/main ppc64el grub-common ppc64el 2.12-5ubuntu7 [2341 kB] 76s Get:19 http://ftpmaster.internal/ubuntu plucky/main ppc64el libassuan9 ppc64el 3.0.1-2 [47.7 kB] 76s Get:20 http://ftpmaster.internal/ubuntu plucky/main ppc64el libgpgme11t64 ppc64el 1.24.0-2ubuntu1 [178 kB] 76s Get:21 http://ftpmaster.internal/ubuntu plucky/main ppc64el libjson-glib-1.0-common all 1.10.0+ds-3 [5586 B] 76s Get:22 http://ftpmaster.internal/ubuntu plucky/main ppc64el libjson-glib-1.0-0 ppc64el 1.10.0+ds-3 [76.0 kB] 76s Get:23 http://ftpmaster.internal/ubuntu plucky/main ppc64el libutempter0 ppc64el 1.2.1-4 [9850 B] 76s Get:24 http://ftpmaster.internal/ubuntu plucky/main ppc64el lxd-installer all 9 [5084 B] 76s Get:25 http://ftpmaster.internal/ubuntu plucky/main ppc64el pastebinit all 1.7.1-1 [14.9 kB] 76s Get:26 http://ftpmaster.internal/ubuntu plucky/main ppc64el python3-markupsafe ppc64el 2.1.5-1build3 [13.6 kB] 76s Get:27 http://ftpmaster.internal/ubuntu plucky/main ppc64el python3-systemd ppc64el 235-1build5 [48.7 kB] 76s Get:28 http://ftpmaster.internal/ubuntu plucky/main ppc64el xfsprogs ppc64el 6.8.0-2.2ubuntu2 [995 kB] 76s Preconfiguring packages ... 76s Fetched 18.5 MB in 2s (10.4 MB/s) 77s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 73767 files and directories currently installed.) 77s Preparing to unpack .../firmware-sof-signed_2024.06-1ubuntu2_all.deb ... 77s Unpacking firmware-sof-signed (2024.06-1ubuntu2) over (2024.06-1ubuntu1) ... 77s Preparing to unpack .../libcap-ng0_0.8.5-3build1_ppc64el.deb ... 77s Unpacking libcap-ng0:ppc64el (0.8.5-3build1) over (0.8.5-1) ... 77s Setting up libcap-ng0:ppc64el (0.8.5-3build1) ... 77s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 73793 files and directories currently installed.) 77s Preparing to unpack .../libgnutls30t64_3.8.8-2ubuntu1_ppc64el.deb ... 77s Unpacking libgnutls30t64:ppc64el (3.8.8-2ubuntu1) over (3.8.6-2ubuntu1) ... 77s Setting up libgnutls30t64:ppc64el (3.8.8-2ubuntu1) ... 77s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 73793 files and directories currently installed.) 77s Preparing to unpack .../libseccomp2_2.5.5-1ubuntu5_ppc64el.deb ... 77s Unpacking libseccomp2:ppc64el (2.5.5-1ubuntu5) over (2.5.5-1ubuntu4) ... 77s Setting up libseccomp2:ppc64el (2.5.5-1ubuntu5) ... 77s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 73793 files and directories currently installed.) 77s Preparing to unpack .../00-libexpat1_2.6.4-1_ppc64el.deb ... 77s Unpacking libexpat1:ppc64el (2.6.4-1) over (2.6.2-2) ... 77s Preparing to unpack .../01-python3-newt_0.52.24-2ubuntu4_ppc64el.deb ... 77s Unpacking python3-newt:ppc64el (0.52.24-2ubuntu4) over (0.52.24-2ubuntu3) ... 77s Preparing to unpack .../02-libnewt0.52_0.52.24-2ubuntu4_ppc64el.deb ... 77s Unpacking libnewt0.52:ppc64el (0.52.24-2ubuntu4) over (0.52.24-2ubuntu3) ... 77s Preparing to unpack .../03-python3-cffi-backend_1.17.1-2build1_ppc64el.deb ... 77s Unpacking python3-cffi-backend:ppc64el (1.17.1-2build1) over (1.17.1-2) ... 77s Preparing to unpack .../04-whiptail_0.52.24-2ubuntu4_ppc64el.deb ... 77s Unpacking whiptail (0.52.24-2ubuntu4) over (0.52.24-2ubuntu3) ... 77s Preparing to unpack .../05-man-db_2.13.0-1_ppc64el.deb ... 77s Unpacking man-db (2.13.0-1) over (2.12.1-3) ... 77s Preparing to unpack .../06-libbpfcc_0.30.0+ds-1ubuntu5_ppc64el.deb ... 77s Unpacking libbpfcc:ppc64el (0.30.0+ds-1ubuntu5) over (0.30.0+ds-1ubuntu4) ... 77s Preparing to unpack .../07-python3-bpfcc_0.30.0+ds-1ubuntu5_all.deb ... 78s Unpacking python3-bpfcc (0.30.0+ds-1ubuntu5) over (0.30.0+ds-1ubuntu4) ... 78s Preparing to unpack .../08-bpfcc-tools_0.30.0+ds-1ubuntu5_all.deb ... 78s Unpacking bpfcc-tools (0.30.0+ds-1ubuntu5) over (0.30.0+ds-1ubuntu4) ... 78s Preparing to unpack .../09-bpftrace_0.21.2-2ubuntu2_ppc64el.deb ... 78s Unpacking bpftrace (0.21.2-2ubuntu2) over (0.21.2-2) ... 78s Preparing to unpack .../10-grub-ieee1275_2.12-5ubuntu7_ppc64el.deb ... 78s Unpacking grub-ieee1275 (2.12-5ubuntu7) over (2.12-5ubuntu5.1) ... 78s Preparing to unpack .../11-grub2-common_2.12-5ubuntu7_ppc64el.deb ... 78s Unpacking grub2-common (2.12-5ubuntu7) over (2.12-5ubuntu5.1) ... 78s Preparing to unpack .../12-grub-ieee1275-bin_2.12-5ubuntu7_ppc64el.deb ... 78s Unpacking grub-ieee1275-bin (2.12-5ubuntu7) over (2.12-5ubuntu5.1) ... 78s Preparing to unpack .../13-grub-common_2.12-5ubuntu7_ppc64el.deb ... 78s Unpacking grub-common (2.12-5ubuntu7) over (2.12-5ubuntu5.1) ... 78s Selecting previously unselected package libassuan9:ppc64el. 78s Preparing to unpack .../14-libassuan9_3.0.1-2_ppc64el.deb ... 78s Unpacking libassuan9:ppc64el (3.0.1-2) ... 78s Preparing to unpack .../15-libgpgme11t64_1.24.0-2ubuntu1_ppc64el.deb ... 78s Unpacking libgpgme11t64:ppc64el (1.24.0-2ubuntu1) over (1.23.2-5ubuntu4) ... 78s Preparing to unpack .../16-libjson-glib-1.0-common_1.10.0+ds-3_all.deb ... 78s Unpacking libjson-glib-1.0-common (1.10.0+ds-3) over (1.10.0+ds-2) ... 78s Preparing to unpack .../17-libjson-glib-1.0-0_1.10.0+ds-3_ppc64el.deb ... 78s Unpacking libjson-glib-1.0-0:ppc64el (1.10.0+ds-3) over (1.10.0+ds-2) ... 78s Preparing to unpack .../18-libutempter0_1.2.1-4_ppc64el.deb ... 78s Unpacking libutempter0:ppc64el (1.2.1-4) over (1.2.1-3build1) ... 78s Preparing to unpack .../19-lxd-installer_9_all.deb ... 78s Unpacking lxd-installer (9) over (8) ... 78s Preparing to unpack .../20-pastebinit_1.7.1-1_all.deb ... 78s Unpacking pastebinit (1.7.1-1) over (1.7.0-1) ... 78s Preparing to unpack .../21-python3-markupsafe_2.1.5-1build3_ppc64el.deb ... 78s Unpacking python3-markupsafe (2.1.5-1build3) over (2.1.5-1build2) ... 78s Preparing to unpack .../22-python3-systemd_235-1build5_ppc64el.deb ... 78s Unpacking python3-systemd (235-1build5) over (235-1build4) ... 78s Preparing to unpack .../23-xfsprogs_6.8.0-2.2ubuntu2_ppc64el.deb ... 78s Unpacking xfsprogs (6.8.0-2.2ubuntu2) over (6.8.0-2.2ubuntu1) ... 78s Setting up libexpat1:ppc64el (2.6.4-1) ... 78s Setting up libnewt0.52:ppc64el (0.52.24-2ubuntu4) ... 78s Setting up firmware-sof-signed (2024.06-1ubuntu2) ... 79s Setting up pastebinit (1.7.1-1) ... 79s Setting up python3-newt:ppc64el (0.52.24-2ubuntu4) ... 79s Setting up man-db (2.13.0-1) ... 79s Updating database of manual pages ... 81s man-db.service is a disabled or a static unit not running, not starting it. 81s Setting up python3-markupsafe (2.1.5-1build3) ... 81s Setting up grub-common (2.12-5ubuntu7) ... 82s Setting up xfsprogs (6.8.0-2.2ubuntu2) ... 82s update-initramfs: deferring update (trigger activated) 82s Setting up lxd-installer (9) ... 83s Setting up libutempter0:ppc64el (1.2.1-4) ... 83s Setting up whiptail (0.52.24-2ubuntu4) ... 83s Setting up libassuan9:ppc64el (3.0.1-2) ... 83s Setting up libjson-glib-1.0-common (1.10.0+ds-3) ... 83s Setting up libgpgme11t64:ppc64el (1.24.0-2ubuntu1) ... 83s Setting up libbpfcc:ppc64el (0.30.0+ds-1ubuntu5) ... 83s Setting up python3-bpfcc (0.30.0+ds-1ubuntu5) ... 83s Setting up python3-systemd (235-1build5) ... 83s Setting up python3-cffi-backend:ppc64el (1.17.1-2build1) ... 83s Setting up bpftrace (0.21.2-2ubuntu2) ... 83s Setting up grub2-common (2.12-5ubuntu7) ... 83s Setting up grub-ieee1275-bin (2.12-5ubuntu7) ... 83s Setting up libjson-glib-1.0-0:ppc64el (1.10.0+ds-3) ... 83s Setting up bpfcc-tools (0.30.0+ds-1ubuntu5) ... 83s Setting up grub-ieee1275 (2.12-5ubuntu7) ... 83s Installing for powerpc-ieee1275 platform. 84s Installation finished. No error reported. 84s Sourcing file `/etc/default/grub' 84s Sourcing file `/etc/default/grub.d/50-cloudimg-settings.cfg' 84s Generating grub configuration file ... 84s Found linux image: /boot/vmlinux-6.11.0-8-generic 84s Found initrd image: /boot/initrd.img-6.11.0-8-generic 84s Warning: os-prober will not be executed to detect other bootable partitions. 84s Systems on them will not be added to the GRUB boot configuration. 84s Check GRUB_DISABLE_OS_PROBER documentation entry. 84s Adding boot menu entry for UEFI Firmware Settings ... 84s done 84s Processing triggers for install-info (7.1.1-1) ... 84s Processing triggers for libc-bin (2.40-1ubuntu3) ... 84s Processing triggers for initramfs-tools (0.142ubuntu34) ... 84s update-initramfs: Generating /boot/initrd.img-6.11.0-8-generic 84s W: No lz4 in /usr/bin:/sbin:/bin, using gzip 92s Reading package lists... 93s Building dependency tree... 93s Reading state information... 93s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 93s Hit:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease 93s Hit:2 http://ftpmaster.internal/ubuntu plucky InRelease 94s Hit:3 http://ftpmaster.internal/ubuntu plucky-updates InRelease 94s Hit:4 http://ftpmaster.internal/ubuntu plucky-security InRelease 95s Reading package lists... 95s Reading package lists... 95s Building dependency tree... 95s Reading state information... 95s Calculating upgrade... 95s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 95s Reading package lists... 96s Building dependency tree... 96s Reading state information... 96s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 96s autopkgtest [20:55:39]: rebooting testbed after setup commands that affected boot 100s autopkgtest-virt-ssh: WARNING: ssh connection failed. Retrying in 3 seconds... 127s autopkgtest [20:56:10]: testbed running kernel: Linux 6.11.0-8-generic #8-Ubuntu SMP Mon Sep 16 13:49:23 UTC 2024 129s autopkgtest [20:56:12]: @@@@@@@@@@@@@@@@@@@@ apt-source python-pauvre 131s Get:1 http://ftpmaster.internal/ubuntu plucky/universe python-pauvre 0.2.3-4 (dsc) [2485 B] 131s Get:2 http://ftpmaster.internal/ubuntu plucky/universe python-pauvre 0.2.3-4 (tar) [61.9 kB] 131s Get:3 http://ftpmaster.internal/ubuntu plucky/universe python-pauvre 0.2.3-4 (diff) [8548 B] 131s gpgv: Signature made Thu Nov 7 22:55:52 2024 UTC 131s gpgv: using RSA key 8F91B227C7D6F2B1948C8236793CF67E8F0D11DA 131s gpgv: issuer "emollier@debian.org" 131s gpgv: Can't check signature: No public key 131s dpkg-source: warning: cannot verify inline signature for ./python-pauvre_0.2.3-4.dsc: no acceptable signature found 132s autopkgtest [20:56:15]: testing package python-pauvre version 0.2.3-4 132s autopkgtest [20:56:15]: build not needed 132s autopkgtest [20:56:15]: test run-unit-test: preparing testbed 139s Reading package lists... 139s Building dependency tree... 139s Reading state information... 139s Starting pkgProblemResolver with broken count: 0 140s Starting 2 pkgProblemResolver with broken count: 0 140s Done 140s The following additional packages will be installed: 140s blt fontconfig-config fonts-dejavu-core fonts-dejavu-mono fonts-lyx 140s fonts-urw-base35 libblas3 libcairo2 libdeflate0 libfontconfig1 libfontenc1 140s libgfortran5 libgomp1 libgraphite2-3 libharfbuzz0b libimagequant0 libjbig0 140s libjpeg-turbo8 libjpeg8 libjs-jquery libjs-jquery-ui liblapack3 liblbfgsb0 140s liblcms2-2 liblerc4 libopenjp2-7 libpixman-1-0 libqhull-r8.0 libraqm0 140s libsharpyuv0 libtcl8.6 libtiff6 libtk8.6 libwebp7 libwebpdemux2 libwebpmux3 140s libxcb-render0 libxcb-shm0 libxft2 libxrender1 libxslt1.1 libxss1 140s python-matplotlib-data python3-appdirs python3-biopython python3-brotli 140s python3-cairo python3-contourpy python3-cycler python3-dateutil 140s python3-decorator python3-fonttools python3-freetype python3-fs 140s python3-joblib python3-kiwisolver python3-lxml python3-lz4 140s python3-matplotlib python3-mpmath python3-nanoget-examples python3-numpy 140s python3-packaging python3-pandas python3-pandas-lib python3-pauvre 140s python3-pil python3-pil.imagetk python3-reportlab python3-rlpycairo 140s python3-scipy python3-six python3-sklearn python3-sklearn-lib python3-sympy 140s python3-threadpoolctl python3-tk python3-tz python3-ufolib2 140s python3-unicodedata2 python3.12-tk sgml-base tk8.6-blt2.5 unicode-data 140s w3c-sgml-lib x11-common xfonts-encodings xfonts-utils xml-core 140s Suggested packages: 140s blt-demo fonts-freefont-otf | fonts-freefont-ttf fonts-texgyre 140s libjs-jquery-ui-docs liblcms2-utils tcl8.6 tk8.6 bwa clustalo clustalw 140s dialign dssp emboss fasttree mafft muscle3 phylip phyml prank probcons 140s python3-mysqldb python3-mmtf python3-rdflib python3-psycopg2 raxml samtools 140s t-coffee wise python-cycler-doc python-joblib-doc python-lxml-doc 140s cm-super-minimal dvipng ffmpeg fonts-staypuft ghostscript gir1.2-gtk-3.0 140s inkscape ipython3 librsvg2-common python-matplotlib-doc python3-cairocffi 140s python3-gi-cairo python3-gobject python3-pyqt5 python3-sip python3-tornado 140s texlive-extra-utils texlive-latex-extra python-mpmath-doc python3-gmpy2 gcc 140s gfortran python-numpy-doc python3-dev python3-pytest python-pandas-doc 140s python3-statsmodels python-pil-doc pdf-viewer python3-egenix-mxtexttools 140s python-reportlab-doc rl-accel rl-renderpm python-scipy-doc python3-dap 140s python-sklearn-doc texlive-fonts-extra python-sympy-doc tix python3-tk-dbg 140s python3.13-tk sgml-base-doc debhelper 140s Recommended packages: 140s javascript-common python-biopython-doc ncbi-blast+ python3-pytest 140s python3-simplejson python3-psutil python3-bs4 python3-cssselect 140s python3-html5lib python3-bottleneck python3-numexpr python3-odf 140s python3-openpyxl python3-tables python3-olefile fonts-dejavu-extra g++ 140s | c++-compiler isympy-common 140s The following NEW packages will be installed: 140s autopkgtest-satdep blt fontconfig-config fonts-dejavu-core fonts-dejavu-mono 140s fonts-lyx fonts-urw-base35 libblas3 libcairo2 libdeflate0 libfontconfig1 140s libfontenc1 libgfortran5 libgomp1 libgraphite2-3 libharfbuzz0b 140s libimagequant0 libjbig0 libjpeg-turbo8 libjpeg8 libjs-jquery libjs-jquery-ui 140s liblapack3 liblbfgsb0 liblcms2-2 liblerc4 libopenjp2-7 libpixman-1-0 140s libqhull-r8.0 libraqm0 libsharpyuv0 libtcl8.6 libtiff6 libtk8.6 libwebp7 140s libwebpdemux2 libwebpmux3 libxcb-render0 libxcb-shm0 libxft2 libxrender1 140s libxslt1.1 libxss1 python-matplotlib-data python3-appdirs python3-biopython 140s python3-brotli python3-cairo python3-contourpy python3-cycler 140s python3-dateutil python3-decorator python3-fonttools python3-freetype 140s python3-fs python3-joblib python3-kiwisolver python3-lxml python3-lz4 140s python3-matplotlib python3-mpmath python3-nanoget-examples python3-numpy 140s python3-packaging python3-pandas python3-pandas-lib python3-pauvre 140s python3-pil python3-pil.imagetk python3-reportlab python3-rlpycairo 140s python3-scipy python3-six python3-sklearn python3-sklearn-lib python3-sympy 140s python3-threadpoolctl python3-tk python3-tz python3-ufolib2 140s python3-unicodedata2 python3.12-tk sgml-base tk8.6-blt2.5 unicode-data 140s w3c-sgml-lib x11-common xfonts-encodings xfonts-utils xml-core 140s 0 upgraded, 90 newly installed, 0 to remove and 0 not upgraded. 140s Need to get 120 MB/120 MB of archives. 140s After this operation, 450 MB of additional disk space will be used. 140s Get:1 /tmp/autopkgtest.8aGwuC/1-autopkgtest-satdep.deb autopkgtest-satdep ppc64el 0 [728 B] 140s Get:2 http://ftpmaster.internal/ubuntu plucky/main ppc64el sgml-base all 1.31 [11.4 kB] 140s Get:3 http://ftpmaster.internal/ubuntu plucky/main ppc64el libtcl8.6 ppc64el 8.6.15+dfsg-2 [1201 kB] 140s Get:4 http://ftpmaster.internal/ubuntu plucky/main ppc64el fonts-dejavu-mono all 2.37-8 [502 kB] 140s Get:5 http://ftpmaster.internal/ubuntu plucky/main ppc64el fonts-dejavu-core all 2.37-8 [835 kB] 141s Get:6 http://ftpmaster.internal/ubuntu plucky/main ppc64el libfontenc1 ppc64el 1:1.1.8-1build1 [15.8 kB] 141s Get:7 http://ftpmaster.internal/ubuntu plucky/main ppc64el x11-common all 1:7.7+23ubuntu3 [21.7 kB] 141s Get:8 http://ftpmaster.internal/ubuntu plucky/main ppc64el xfonts-encodings all 1:1.0.5-0ubuntu2 [578 kB] 141s Get:9 http://ftpmaster.internal/ubuntu plucky/main ppc64el xfonts-utils ppc64el 1:7.7+7 [114 kB] 141s Get:10 http://ftpmaster.internal/ubuntu plucky/main ppc64el fonts-urw-base35 all 20200910-8 [11.0 MB] 141s Get:11 http://ftpmaster.internal/ubuntu plucky/main ppc64el fontconfig-config ppc64el 2.15.0-1.1ubuntu2 [37.4 kB] 141s Get:12 http://ftpmaster.internal/ubuntu plucky/main ppc64el libfontconfig1 ppc64el 2.15.0-1.1ubuntu2 [190 kB] 141s Get:13 http://ftpmaster.internal/ubuntu plucky/main ppc64el libxrender1 ppc64el 1:0.9.10-1.1build1 [23.1 kB] 141s Get:14 http://ftpmaster.internal/ubuntu plucky/main ppc64el libxft2 ppc64el 2.3.6-1build1 [61.5 kB] 141s Get:15 http://ftpmaster.internal/ubuntu plucky/main ppc64el libxss1 ppc64el 1:1.2.3-1build3 [7980 B] 141s Get:16 http://ftpmaster.internal/ubuntu plucky/main ppc64el libtk8.6 ppc64el 8.6.15-1 [942 kB] 141s Get:17 http://ftpmaster.internal/ubuntu plucky/main ppc64el tk8.6-blt2.5 ppc64el 2.5.3+dfsg-7build1 [784 kB] 141s Get:18 http://ftpmaster.internal/ubuntu plucky/main ppc64el blt ppc64el 2.5.3+dfsg-7build1 [4840 B] 141s Get:19 http://ftpmaster.internal/ubuntu plucky/universe ppc64el fonts-lyx all 2.4.2.1-1 [171 kB] 141s Get:20 http://ftpmaster.internal/ubuntu plucky/main ppc64el libblas3 ppc64el 3.12.0-3build2 [222 kB] 141s Get:21 http://ftpmaster.internal/ubuntu plucky/main ppc64el libpixman-1-0 ppc64el 0.44.0-3 [334 kB] 141s Get:22 http://ftpmaster.internal/ubuntu plucky/main ppc64el libxcb-render0 ppc64el 1.17.0-2 [17.2 kB] 141s Get:23 http://ftpmaster.internal/ubuntu plucky/main ppc64el libxcb-shm0 ppc64el 1.17.0-2 [5980 B] 141s Get:24 http://ftpmaster.internal/ubuntu plucky/main ppc64el libcairo2 ppc64el 1.18.2-2 [747 kB] 141s Get:25 http://ftpmaster.internal/ubuntu plucky/main ppc64el libdeflate0 ppc64el 1.22-1 [63.3 kB] 141s Get:26 http://ftpmaster.internal/ubuntu plucky/main ppc64el libgfortran5 ppc64el 14.2.0-8ubuntu1 [571 kB] 141s Get:27 http://ftpmaster.internal/ubuntu plucky/main ppc64el libgomp1 ppc64el 14.2.0-8ubuntu1 [161 kB] 141s Get:28 http://ftpmaster.internal/ubuntu plucky/main ppc64el libgraphite2-3 ppc64el 1.3.14-2ubuntu1 [84.6 kB] 141s Get:29 http://ftpmaster.internal/ubuntu plucky/main ppc64el libharfbuzz0b ppc64el 10.0.1-1 [596 kB] 141s Get:30 http://ftpmaster.internal/ubuntu plucky/main ppc64el libimagequant0 ppc64el 2.18.0-1build1 [43.2 kB] 141s Get:31 http://ftpmaster.internal/ubuntu plucky/main ppc64el libjpeg-turbo8 ppc64el 2.1.5-2ubuntu2 [219 kB] 141s Get:32 http://ftpmaster.internal/ubuntu plucky/main ppc64el libjpeg8 ppc64el 8c-2ubuntu11 [2148 B] 141s Get:33 http://ftpmaster.internal/ubuntu plucky/main ppc64el libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [328 kB] 141s Get:34 http://ftpmaster.internal/ubuntu plucky/universe ppc64el libjs-jquery-ui all 1.13.2+dfsg-1 [252 kB] 141s Get:35 http://ftpmaster.internal/ubuntu plucky/main ppc64el liblapack3 ppc64el 3.12.0-3build2 [2806 kB] 141s Get:36 http://ftpmaster.internal/ubuntu plucky/universe ppc64el liblbfgsb0 ppc64el 3.0+dfsg.4-1build1 [33.0 kB] 141s Get:37 http://ftpmaster.internal/ubuntu plucky/main ppc64el liblcms2-2 ppc64el 2.16-2 [243 kB] 141s Get:38 http://ftpmaster.internal/ubuntu plucky/main ppc64el liblerc4 ppc64el 4.0.0+ds-4ubuntu2 [270 kB] 141s Get:39 http://ftpmaster.internal/ubuntu plucky/universe ppc64el libqhull-r8.0 ppc64el 2020.2-6build1 [225 kB] 141s Get:40 http://ftpmaster.internal/ubuntu plucky/main ppc64el libraqm0 ppc64el 0.10.1-1build1 [19.4 kB] 141s Get:41 http://ftpmaster.internal/ubuntu plucky/main ppc64el libsharpyuv0 ppc64el 1.4.0-0.1 [22.0 kB] 141s Get:42 http://ftpmaster.internal/ubuntu plucky/main ppc64el libjbig0 ppc64el 2.1-6.1ubuntu2 [35.9 kB] 141s Get:43 http://ftpmaster.internal/ubuntu plucky/main ppc64el libwebp7 ppc64el 1.4.0-0.1 [309 kB] 141s Get:44 http://ftpmaster.internal/ubuntu plucky/main ppc64el libtiff6 ppc64el 4.5.1+git230720-4ubuntu4 [272 kB] 141s Get:45 http://ftpmaster.internal/ubuntu plucky/main ppc64el libwebpdemux2 ppc64el 1.4.0-0.1 [14.1 kB] 141s Get:46 http://ftpmaster.internal/ubuntu plucky/main ppc64el libwebpmux3 ppc64el 1.4.0-0.1 [31.4 kB] 141s Get:47 http://ftpmaster.internal/ubuntu plucky/main ppc64el libxslt1.1 ppc64el 1.1.39-0exp1ubuntu1 [191 kB] 141s Get:48 http://ftpmaster.internal/ubuntu plucky/universe ppc64el python-matplotlib-data all 3.8.3-3 [2928 kB] 142s Get:49 http://ftpmaster.internal/ubuntu plucky/main ppc64el python3-appdirs all 1.4.4-4 [10.9 kB] 142s Get:50 http://ftpmaster.internal/ubuntu plucky/main ppc64el python3-numpy ppc64el 1:1.26.4+ds-11build1 [4434 kB] 142s Get:51 http://ftpmaster.internal/ubuntu plucky/main ppc64el python3.12-tk ppc64el 3.12.7-3 [116 kB] 142s Get:52 http://ftpmaster.internal/ubuntu plucky/main ppc64el python3-tk ppc64el 3.12.6-1ubuntu1 [9806 B] 142s Get:53 http://ftpmaster.internal/ubuntu plucky/universe ppc64el python3-pil.imagetk ppc64el 10.4.0-1ubuntu1 [9810 B] 142s Get:54 http://ftpmaster.internal/ubuntu plucky/main ppc64el libopenjp2-7 ppc64el 2.5.0-2ubuntu1 [246 kB] 142s Get:55 http://ftpmaster.internal/ubuntu plucky/main ppc64el python3-pil ppc64el 10.4.0-1ubuntu1 [581 kB] 142s Get:56 http://ftpmaster.internal/ubuntu plucky/main ppc64el python3-cairo ppc64el 1.26.1-2 [129 kB] 142s Get:57 http://ftpmaster.internal/ubuntu plucky/universe ppc64el python3-freetype all 2.5.1-1 [92.3 kB] 142s Get:58 http://ftpmaster.internal/ubuntu plucky/universe ppc64el python3-rlpycairo all 0.3.0-3 [9130 B] 142s Get:59 http://ftpmaster.internal/ubuntu plucky/universe ppc64el python3-reportlab all 4.2.5-1 [1107 kB] 142s Get:60 http://ftpmaster.internal/ubuntu plucky/main ppc64el xml-core all 0.19 [20.3 kB] 142s Get:61 http://ftpmaster.internal/ubuntu plucky/universe ppc64el w3c-sgml-lib all 1.3-3 [280 kB] 142s Get:62 http://ftpmaster.internal/ubuntu plucky/universe ppc64el python3-biopython ppc64el 1.84+dfsg-4 [1738 kB] 142s Get:63 http://ftpmaster.internal/ubuntu plucky/universe ppc64el python3-brotli ppc64el 1.1.0-2build2 [413 kB] 142s Get:64 http://ftpmaster.internal/ubuntu plucky/universe ppc64el python3-contourpy ppc64el 1.3.0-2build1 [261 kB] 142s Get:65 http://ftpmaster.internal/ubuntu plucky/universe ppc64el python3-cycler all 0.12.1-1 [9716 B] 142s Get:66 http://ftpmaster.internal/ubuntu plucky/main ppc64el python3-six all 1.16.0-7 [13.1 kB] 142s Get:67 http://ftpmaster.internal/ubuntu plucky/main ppc64el python3-dateutil all 2.9.0-2 [80.3 kB] 142s Get:68 http://ftpmaster.internal/ubuntu plucky/main ppc64el python3-decorator all 5.1.1-5 [10.1 kB] 142s Get:69 http://ftpmaster.internal/ubuntu plucky/universe ppc64el python3-scipy ppc64el 1.13.1-5 [18.3 MB] 142s Get:70 http://ftpmaster.internal/ubuntu plucky/universe ppc64el python3-ufolib2 all 0.16.1+dfsg1-1 [33.4 kB] 142s Get:71 http://ftpmaster.internal/ubuntu plucky/universe ppc64el python3-mpmath all 1.3.0-1 [425 kB] 142s Get:72 http://ftpmaster.internal/ubuntu plucky/universe ppc64el python3-sympy all 1.13.3-1 [4228 kB] 142s Get:73 http://ftpmaster.internal/ubuntu plucky/main ppc64el python3-tz all 2024.1-2 [31.4 kB] 142s Get:74 http://ftpmaster.internal/ubuntu plucky/universe ppc64el python3-fs all 2.4.16-4 [91.3 kB] 142s Get:75 http://ftpmaster.internal/ubuntu plucky/main ppc64el python3-lxml ppc64el 5.3.0-1 [1354 kB] 142s Get:76 http://ftpmaster.internal/ubuntu plucky/universe ppc64el python3-lz4 ppc64el 4.0.2+dfsg-1build4 [27.8 kB] 142s Get:77 http://ftpmaster.internal/ubuntu plucky/universe ppc64el python3-unicodedata2 ppc64el 15.1.0+ds-1build2 [361 kB] 142s Get:78 http://ftpmaster.internal/ubuntu plucky/universe ppc64el unicode-data all 15.1.0-1 [8878 kB] 142s Get:79 http://ftpmaster.internal/ubuntu plucky/universe ppc64el python3-fonttools ppc64el 4.46.0-1build2 [1473 kB] 142s Get:80 http://ftpmaster.internal/ubuntu plucky/universe ppc64el python3-joblib all 1.3.2-5 [206 kB] 142s Get:81 http://ftpmaster.internal/ubuntu plucky/universe ppc64el python3-kiwisolver ppc64el 1.4.7-2build1 [72.9 kB] 142s Get:82 http://ftpmaster.internal/ubuntu plucky/main ppc64el python3-packaging all 24.1-1 [41.4 kB] 142s Get:83 http://ftpmaster.internal/ubuntu plucky/universe ppc64el python3-matplotlib ppc64el 3.8.3-3 [4610 kB] 143s Get:84 http://ftpmaster.internal/ubuntu plucky/universe ppc64el python3-nanoget-examples all 1.19.3-1 [26.2 MB] 143s Get:85 http://ftpmaster.internal/ubuntu plucky/universe ppc64el python3-pandas-lib ppc64el 2.2.3+dfsg-5 [4761 kB] 143s Get:86 http://ftpmaster.internal/ubuntu plucky/universe ppc64el python3-pandas all 2.2.3+dfsg-5 [3112 kB] 143s Get:87 http://ftpmaster.internal/ubuntu plucky/universe ppc64el python3-threadpoolctl all 3.1.0-1 [21.3 kB] 143s Get:88 http://ftpmaster.internal/ubuntu plucky-proposed/universe ppc64el python3-sklearn-lib ppc64el 1.4.2+dfsg-6build1 [6462 kB] 143s Get:89 http://ftpmaster.internal/ubuntu plucky-proposed/universe ppc64el python3-sklearn all 1.4.2+dfsg-6build1 [2257 kB] 144s Get:90 http://ftpmaster.internal/ubuntu plucky/universe ppc64el python3-pauvre all 0.2.3-4 [52.7 kB] 144s Fetched 120 MB in 4s (33.0 MB/s) 144s Selecting previously unselected package sgml-base. 144s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 73808 files and directories currently installed.) 144s Preparing to unpack .../00-sgml-base_1.31_all.deb ... 144s Unpacking sgml-base (1.31) ... 144s Selecting previously unselected package libtcl8.6:ppc64el. 144s Preparing to unpack .../01-libtcl8.6_8.6.15+dfsg-2_ppc64el.deb ... 144s Unpacking libtcl8.6:ppc64el (8.6.15+dfsg-2) ... 144s Selecting previously unselected package fonts-dejavu-mono. 144s Preparing to unpack .../02-fonts-dejavu-mono_2.37-8_all.deb ... 144s Unpacking fonts-dejavu-mono (2.37-8) ... 144s Selecting previously unselected package fonts-dejavu-core. 144s Preparing to unpack .../03-fonts-dejavu-core_2.37-8_all.deb ... 144s Unpacking fonts-dejavu-core (2.37-8) ... 144s Selecting previously unselected package libfontenc1:ppc64el. 144s Preparing to unpack .../04-libfontenc1_1%3a1.1.8-1build1_ppc64el.deb ... 144s Unpacking libfontenc1:ppc64el (1:1.1.8-1build1) ... 144s Selecting previously unselected package x11-common. 144s Preparing to unpack .../05-x11-common_1%3a7.7+23ubuntu3_all.deb ... 144s Unpacking x11-common (1:7.7+23ubuntu3) ... 144s Selecting previously unselected package xfonts-encodings. 144s Preparing to unpack .../06-xfonts-encodings_1%3a1.0.5-0ubuntu2_all.deb ... 144s Unpacking xfonts-encodings (1:1.0.5-0ubuntu2) ... 144s Selecting previously unselected package xfonts-utils. 144s Preparing to unpack .../07-xfonts-utils_1%3a7.7+7_ppc64el.deb ... 144s Unpacking xfonts-utils (1:7.7+7) ... 144s Selecting previously unselected package fonts-urw-base35. 144s Preparing to unpack .../08-fonts-urw-base35_20200910-8_all.deb ... 145s Unpacking fonts-urw-base35 (20200910-8) ... 145s Selecting previously unselected package fontconfig-config. 145s Preparing to unpack .../09-fontconfig-config_2.15.0-1.1ubuntu2_ppc64el.deb ... 145s Unpacking fontconfig-config (2.15.0-1.1ubuntu2) ... 145s Selecting previously unselected package libfontconfig1:ppc64el. 145s Preparing to unpack .../10-libfontconfig1_2.15.0-1.1ubuntu2_ppc64el.deb ... 145s Unpacking libfontconfig1:ppc64el (2.15.0-1.1ubuntu2) ... 145s Selecting previously unselected package libxrender1:ppc64el. 145s Preparing to unpack .../11-libxrender1_1%3a0.9.10-1.1build1_ppc64el.deb ... 145s Unpacking libxrender1:ppc64el (1:0.9.10-1.1build1) ... 145s Selecting previously unselected package libxft2:ppc64el. 145s Preparing to unpack .../12-libxft2_2.3.6-1build1_ppc64el.deb ... 145s Unpacking libxft2:ppc64el (2.3.6-1build1) ... 145s Selecting previously unselected package libxss1:ppc64el. 145s Preparing to unpack .../13-libxss1_1%3a1.2.3-1build3_ppc64el.deb ... 145s Unpacking libxss1:ppc64el (1:1.2.3-1build3) ... 145s Selecting previously unselected package libtk8.6:ppc64el. 145s Preparing to unpack .../14-libtk8.6_8.6.15-1_ppc64el.deb ... 145s Unpacking libtk8.6:ppc64el (8.6.15-1) ... 145s Selecting previously unselected package tk8.6-blt2.5. 145s Preparing to unpack .../15-tk8.6-blt2.5_2.5.3+dfsg-7build1_ppc64el.deb ... 145s Unpacking tk8.6-blt2.5 (2.5.3+dfsg-7build1) ... 145s Selecting previously unselected package blt. 145s Preparing to unpack .../16-blt_2.5.3+dfsg-7build1_ppc64el.deb ... 145s Unpacking blt (2.5.3+dfsg-7build1) ... 145s Selecting previously unselected package fonts-lyx. 145s Preparing to unpack .../17-fonts-lyx_2.4.2.1-1_all.deb ... 145s Unpacking fonts-lyx (2.4.2.1-1) ... 145s Selecting previously unselected package libblas3:ppc64el. 145s Preparing to unpack .../18-libblas3_3.12.0-3build2_ppc64el.deb ... 145s Unpacking libblas3:ppc64el (3.12.0-3build2) ... 145s Selecting previously unselected package libpixman-1-0:ppc64el. 145s Preparing to unpack .../19-libpixman-1-0_0.44.0-3_ppc64el.deb ... 145s Unpacking libpixman-1-0:ppc64el (0.44.0-3) ... 145s Selecting previously unselected package libxcb-render0:ppc64el. 145s Preparing to unpack .../20-libxcb-render0_1.17.0-2_ppc64el.deb ... 145s Unpacking libxcb-render0:ppc64el (1.17.0-2) ... 145s Selecting previously unselected package libxcb-shm0:ppc64el. 145s Preparing to unpack .../21-libxcb-shm0_1.17.0-2_ppc64el.deb ... 145s Unpacking libxcb-shm0:ppc64el (1.17.0-2) ... 145s Selecting previously unselected package libcairo2:ppc64el. 145s Preparing to unpack .../22-libcairo2_1.18.2-2_ppc64el.deb ... 145s Unpacking libcairo2:ppc64el (1.18.2-2) ... 145s Selecting previously unselected package libdeflate0:ppc64el. 145s Preparing to unpack .../23-libdeflate0_1.22-1_ppc64el.deb ... 145s Unpacking libdeflate0:ppc64el (1.22-1) ... 145s Selecting previously unselected package libgfortran5:ppc64el. 145s Preparing to unpack .../24-libgfortran5_14.2.0-8ubuntu1_ppc64el.deb ... 145s Unpacking libgfortran5:ppc64el (14.2.0-8ubuntu1) ... 145s Selecting previously unselected package libgomp1:ppc64el. 145s Preparing to unpack .../25-libgomp1_14.2.0-8ubuntu1_ppc64el.deb ... 145s Unpacking libgomp1:ppc64el (14.2.0-8ubuntu1) ... 145s Selecting previously unselected package libgraphite2-3:ppc64el. 145s Preparing to unpack .../26-libgraphite2-3_1.3.14-2ubuntu1_ppc64el.deb ... 145s Unpacking libgraphite2-3:ppc64el (1.3.14-2ubuntu1) ... 145s Selecting previously unselected package libharfbuzz0b:ppc64el. 145s Preparing to unpack .../27-libharfbuzz0b_10.0.1-1_ppc64el.deb ... 145s Unpacking libharfbuzz0b:ppc64el (10.0.1-1) ... 145s Selecting previously unselected package libimagequant0:ppc64el. 145s Preparing to unpack .../28-libimagequant0_2.18.0-1build1_ppc64el.deb ... 145s Unpacking libimagequant0:ppc64el (2.18.0-1build1) ... 145s Selecting previously unselected package libjpeg-turbo8:ppc64el. 145s Preparing to unpack .../29-libjpeg-turbo8_2.1.5-2ubuntu2_ppc64el.deb ... 145s Unpacking libjpeg-turbo8:ppc64el (2.1.5-2ubuntu2) ... 145s Selecting previously unselected package libjpeg8:ppc64el. 145s Preparing to unpack .../30-libjpeg8_8c-2ubuntu11_ppc64el.deb ... 145s Unpacking libjpeg8:ppc64el (8c-2ubuntu11) ... 145s Selecting previously unselected package libjs-jquery. 145s Preparing to unpack .../31-libjs-jquery_3.6.1+dfsg+~3.5.14-1_all.deb ... 145s Unpacking libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... 145s Selecting previously unselected package libjs-jquery-ui. 145s Preparing to unpack .../32-libjs-jquery-ui_1.13.2+dfsg-1_all.deb ... 145s Unpacking libjs-jquery-ui (1.13.2+dfsg-1) ... 145s Selecting previously unselected package liblapack3:ppc64el. 145s Preparing to unpack .../33-liblapack3_3.12.0-3build2_ppc64el.deb ... 145s Unpacking liblapack3:ppc64el (3.12.0-3build2) ... 145s Selecting previously unselected package liblbfgsb0:ppc64el. 145s Preparing to unpack .../34-liblbfgsb0_3.0+dfsg.4-1build1_ppc64el.deb ... 145s Unpacking liblbfgsb0:ppc64el (3.0+dfsg.4-1build1) ... 145s Selecting previously unselected package liblcms2-2:ppc64el. 145s Preparing to unpack .../35-liblcms2-2_2.16-2_ppc64el.deb ... 145s Unpacking liblcms2-2:ppc64el (2.16-2) ... 145s Selecting previously unselected package liblerc4:ppc64el. 145s Preparing to unpack .../36-liblerc4_4.0.0+ds-4ubuntu2_ppc64el.deb ... 145s Unpacking liblerc4:ppc64el (4.0.0+ds-4ubuntu2) ... 145s Selecting previously unselected package libqhull-r8.0:ppc64el. 145s Preparing to unpack .../37-libqhull-r8.0_2020.2-6build1_ppc64el.deb ... 145s Unpacking libqhull-r8.0:ppc64el (2020.2-6build1) ... 146s Selecting previously unselected package libraqm0:ppc64el. 146s Preparing to unpack .../38-libraqm0_0.10.1-1build1_ppc64el.deb ... 146s Unpacking libraqm0:ppc64el (0.10.1-1build1) ... 146s Selecting previously unselected package libsharpyuv0:ppc64el. 146s Preparing to unpack .../39-libsharpyuv0_1.4.0-0.1_ppc64el.deb ... 146s Unpacking libsharpyuv0:ppc64el (1.4.0-0.1) ... 146s Selecting previously unselected package libjbig0:ppc64el. 146s Preparing to unpack .../40-libjbig0_2.1-6.1ubuntu2_ppc64el.deb ... 146s Unpacking libjbig0:ppc64el (2.1-6.1ubuntu2) ... 146s Selecting previously unselected package libwebp7:ppc64el. 146s Preparing to unpack .../41-libwebp7_1.4.0-0.1_ppc64el.deb ... 146s Unpacking libwebp7:ppc64el (1.4.0-0.1) ... 146s Selecting previously unselected package libtiff6:ppc64el. 146s Preparing to unpack .../42-libtiff6_4.5.1+git230720-4ubuntu4_ppc64el.deb ... 146s Unpacking libtiff6:ppc64el (4.5.1+git230720-4ubuntu4) ... 146s Selecting previously unselected package libwebpdemux2:ppc64el. 146s Preparing to unpack .../43-libwebpdemux2_1.4.0-0.1_ppc64el.deb ... 146s Unpacking libwebpdemux2:ppc64el (1.4.0-0.1) ... 146s Selecting previously unselected package libwebpmux3:ppc64el. 146s Preparing to unpack .../44-libwebpmux3_1.4.0-0.1_ppc64el.deb ... 146s Unpacking libwebpmux3:ppc64el (1.4.0-0.1) ... 146s Selecting previously unselected package libxslt1.1:ppc64el. 146s Preparing to unpack .../45-libxslt1.1_1.1.39-0exp1ubuntu1_ppc64el.deb ... 146s Unpacking libxslt1.1:ppc64el (1.1.39-0exp1ubuntu1) ... 146s Selecting previously unselected package python-matplotlib-data. 146s Preparing to unpack .../46-python-matplotlib-data_3.8.3-3_all.deb ... 146s Unpacking python-matplotlib-data (3.8.3-3) ... 146s Selecting previously unselected package python3-appdirs. 146s Preparing to unpack .../47-python3-appdirs_1.4.4-4_all.deb ... 146s Unpacking python3-appdirs (1.4.4-4) ... 146s Selecting previously unselected package python3-numpy. 146s Preparing to unpack .../48-python3-numpy_1%3a1.26.4+ds-11build1_ppc64el.deb ... 146s Unpacking python3-numpy (1:1.26.4+ds-11build1) ... 146s Selecting previously unselected package python3.12-tk. 146s Preparing to unpack .../49-python3.12-tk_3.12.7-3_ppc64el.deb ... 146s Unpacking python3.12-tk (3.12.7-3) ... 146s Selecting previously unselected package python3-tk:ppc64el. 146s Preparing to unpack .../50-python3-tk_3.12.6-1ubuntu1_ppc64el.deb ... 146s Unpacking python3-tk:ppc64el (3.12.6-1ubuntu1) ... 146s Selecting previously unselected package python3-pil.imagetk:ppc64el. 146s Preparing to unpack .../51-python3-pil.imagetk_10.4.0-1ubuntu1_ppc64el.deb ... 146s Unpacking python3-pil.imagetk:ppc64el (10.4.0-1ubuntu1) ... 146s Selecting previously unselected package libopenjp2-7:ppc64el. 146s Preparing to unpack .../52-libopenjp2-7_2.5.0-2ubuntu1_ppc64el.deb ... 146s Unpacking libopenjp2-7:ppc64el (2.5.0-2ubuntu1) ... 146s Selecting previously unselected package python3-pil:ppc64el. 146s Preparing to unpack .../53-python3-pil_10.4.0-1ubuntu1_ppc64el.deb ... 146s Unpacking python3-pil:ppc64el (10.4.0-1ubuntu1) ... 146s Selecting previously unselected package python3-cairo. 146s Preparing to unpack .../54-python3-cairo_1.26.1-2_ppc64el.deb ... 146s Unpacking python3-cairo (1.26.1-2) ... 146s Selecting previously unselected package python3-freetype. 146s Preparing to unpack .../55-python3-freetype_2.5.1-1_all.deb ... 146s Unpacking python3-freetype (2.5.1-1) ... 146s Selecting previously unselected package python3-rlpycairo. 146s Preparing to unpack .../56-python3-rlpycairo_0.3.0-3_all.deb ... 146s Unpacking python3-rlpycairo (0.3.0-3) ... 146s Selecting previously unselected package python3-reportlab. 146s Preparing to unpack .../57-python3-reportlab_4.2.5-1_all.deb ... 146s Unpacking python3-reportlab (4.2.5-1) ... 146s Selecting previously unselected package xml-core. 146s Preparing to unpack .../58-xml-core_0.19_all.deb ... 146s Unpacking xml-core (0.19) ... 146s Selecting previously unselected package w3c-sgml-lib. 146s Preparing to unpack .../59-w3c-sgml-lib_1.3-3_all.deb ... 146s Unpacking w3c-sgml-lib (1.3-3) ... 146s Selecting previously unselected package python3-biopython. 146s Preparing to unpack .../60-python3-biopython_1.84+dfsg-4_ppc64el.deb ... 146s Unpacking python3-biopython (1.84+dfsg-4) ... 146s Selecting previously unselected package python3-brotli. 147s Preparing to unpack .../61-python3-brotli_1.1.0-2build2_ppc64el.deb ... 147s Unpacking python3-brotli (1.1.0-2build2) ... 147s Selecting previously unselected package python3-contourpy. 147s Preparing to unpack .../62-python3-contourpy_1.3.0-2build1_ppc64el.deb ... 147s Unpacking python3-contourpy (1.3.0-2build1) ... 147s Selecting previously unselected package python3-cycler. 147s Preparing to unpack .../63-python3-cycler_0.12.1-1_all.deb ... 147s Unpacking python3-cycler (0.12.1-1) ... 147s Selecting previously unselected package python3-six. 147s Preparing to unpack .../64-python3-six_1.16.0-7_all.deb ... 147s Unpacking python3-six (1.16.0-7) ... 147s Selecting previously unselected package python3-dateutil. 147s Preparing to unpack .../65-python3-dateutil_2.9.0-2_all.deb ... 147s Unpacking python3-dateutil (2.9.0-2) ... 147s Selecting previously unselected package python3-decorator. 147s Preparing to unpack .../66-python3-decorator_5.1.1-5_all.deb ... 147s Unpacking python3-decorator (5.1.1-5) ... 147s Selecting previously unselected package python3-scipy. 147s Preparing to unpack .../67-python3-scipy_1.13.1-5_ppc64el.deb ... 147s Unpacking python3-scipy (1.13.1-5) ... 147s Selecting previously unselected package python3-ufolib2. 147s Preparing to unpack .../68-python3-ufolib2_0.16.1+dfsg1-1_all.deb ... 147s Unpacking python3-ufolib2 (0.16.1+dfsg1-1) ... 147s Selecting previously unselected package python3-mpmath. 147s Preparing to unpack .../69-python3-mpmath_1.3.0-1_all.deb ... 147s Unpacking python3-mpmath (1.3.0-1) ... 147s Selecting previously unselected package python3-sympy. 147s Preparing to unpack .../70-python3-sympy_1.13.3-1_all.deb ... 147s Unpacking python3-sympy (1.13.3-1) ... 148s Selecting previously unselected package python3-tz. 148s 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unselected package python3-nanoget-examples. 148s Preparing to unpack .../82-python3-nanoget-examples_1.19.3-1_all.deb ... 148s Unpacking python3-nanoget-examples (1.19.3-1) ... 148s Selecting previously unselected package python3-pandas-lib:ppc64el. 148s Preparing to unpack .../83-python3-pandas-lib_2.2.3+dfsg-5_ppc64el.deb ... 148s Unpacking python3-pandas-lib:ppc64el (2.2.3+dfsg-5) ... 148s Selecting previously unselected package python3-pandas. 148s Preparing to unpack .../84-python3-pandas_2.2.3+dfsg-5_all.deb ... 148s Unpacking python3-pandas (2.2.3+dfsg-5) ... 149s Selecting previously unselected package python3-threadpoolctl. 149s Preparing to unpack .../85-python3-threadpoolctl_3.1.0-1_all.deb ... 149s Unpacking python3-threadpoolctl (3.1.0-1) ... 149s Selecting previously unselected package python3-sklearn-lib:ppc64el. 149s Preparing to unpack .../86-python3-sklearn-lib_1.4.2+dfsg-6build1_ppc64el.deb ... 149s Unpacking python3-sklearn-lib:ppc64el (1.4.2+dfsg-6build1) ... 149s Selecting previously unselected package python3-sklearn. 149s Preparing to unpack .../87-python3-sklearn_1.4.2+dfsg-6build1_all.deb ... 149s Unpacking python3-sklearn (1.4.2+dfsg-6build1) ... 149s Selecting previously unselected package python3-pauvre. 149s Preparing to unpack .../88-python3-pauvre_0.2.3-4_all.deb ... 149s Unpacking python3-pauvre (0.2.3-4) ... 149s Selecting previously unselected package autopkgtest-satdep. 149s Preparing to unpack .../89-1-autopkgtest-satdep.deb ... 149s Unpacking autopkgtest-satdep (0) ... 149s Setting up libgraphite2-3:ppc64el (1.3.14-2ubuntu1) ... 149s Setting up liblcms2-2:ppc64el (2.16-2) ... 149s Setting up libpixman-1-0:ppc64el (0.44.0-3) ... 149s Setting up libsharpyuv0:ppc64el (1.4.0-0.1) ... 149s Setting up liblerc4:ppc64el (4.0.0+ds-4ubuntu2) ... 149s Setting up libxrender1:ppc64el (1:0.9.10-1.1build1) ... 149s Setting up python3-joblib (1.3.2-5) ... 150s Setting up python3-lz4 (4.0.2+dfsg-1build4) ... 150s Setting up libxcb-render0:ppc64el (1.17.0-2) ... 150s Setting up python3-unicodedata2 (15.1.0+ds-1build2) ... 150s Setting up fonts-lyx (2.4.2.1-1) ... 150s Setting up python3-threadpoolctl (3.1.0-1) ... 150s Setting up x11-common (1:7.7+23ubuntu3) ... 150s Setting up libdeflate0:ppc64el (1.22-1) ... 150s Setting up libqhull-r8.0:ppc64el (2020.2-6build1) ... 150s Setting up libxcb-shm0:ppc64el (1.17.0-2) ... 150s Setting up libgomp1:ppc64el (14.2.0-8ubuntu1) ... 150s Setting up python3-freetype (2.5.1-1) ... 150s Setting up libjbig0:ppc64el (2.1-6.1ubuntu2) ... 150s Setting up python3-tz (2024.1-2) ... 150s Setting up unicode-data (15.1.0-1) ... 150s Setting up python3-six (1.16.0-7) ... 151s Setting up python3-decorator (5.1.1-5) ... 151s Setting up libfontenc1:ppc64el (1:1.1.8-1build1) ... 151s Setting up libblas3:ppc64el (3.12.0-3build2) ... 151s update-alternatives: using /usr/lib/powerpc64le-linux-gnu/blas/libblas.so.3 to provide /usr/lib/powerpc64le-linux-gnu/libblas.so.3 (libblas.so.3-powerpc64le-linux-gnu) in auto mode 151s Setting up python3-packaging (24.1-1) ... 151s Setting up python3-brotli (1.1.0-2build2) ... 151s Setting up xfonts-encodings (1:1.0.5-0ubuntu2) ... 151s Setting up python3-cycler (0.12.1-1) ... 151s Setting up libimagequant0:ppc64el (2.18.0-1build1) ... 151s Setting up fonts-dejavu-mono (2.37-8) ... 151s Setting up python3-kiwisolver (1.4.7-2build1) ... 151s Setting up libtcl8.6:ppc64el (8.6.15+dfsg-2) ... 151s Setting up fonts-dejavu-core (2.37-8) ... 151s Setting up libjpeg-turbo8:ppc64el (2.1.5-2ubuntu2) ... 151s Setting up libgfortran5:ppc64el (14.2.0-8ubuntu1) ... 151s Setting up libwebp7:ppc64el (1.4.0-0.1) ... 151s Setting up libxslt1.1:ppc64el (1.1.39-0exp1ubuntu1) ... 151s Setting up python3-nanoget-examples (1.19.3-1) ... 151s Setting up libopenjp2-7:ppc64el (2.5.0-2ubuntu1) ... 151s Setting up libharfbuzz0b:ppc64el (10.0.1-1) ... 151s Setting up python3-dateutil (2.9.0-2) ... 151s Setting up sgml-base (1.31) ... 151s Setting up libxss1:ppc64el (1:1.2.3-1build3) ... 151s Setting up libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... 152s Setting up python3-mpmath (1.3.0-1) ... 152s Setting up python-matplotlib-data (3.8.3-3) ... 152s Setting up libwebpmux3:ppc64el (1.4.0-0.1) ... 152s Setting up python3-appdirs (1.4.4-4) ... 152s Setting up libjpeg8:ppc64el (8c-2ubuntu11) ... 152s Setting up python3-sympy (1.13.3-1) ... 160s Setting up liblapack3:ppc64el (3.12.0-3build2) ... 160s update-alternatives: using /usr/lib/powerpc64le-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/powerpc64le-linux-gnu/liblapack.so.3 (liblapack.so.3-powerpc64le-linux-gnu) in auto mode 160s Setting up fontconfig-config (2.15.0-1.1ubuntu2) ... 160s Setting up libwebpdemux2:ppc64el (1.4.0-0.1) ... 160s Setting up xfonts-utils (1:7.7+7) ... 160s Setting up python3-fs (2.4.16-4) ... 160s Setting up libjs-jquery-ui (1.13.2+dfsg-1) ... 160s Setting up libraqm0:ppc64el (0.10.1-1build1) ... 160s Setting up python3-numpy (1:1.26.4+ds-11build1) ... 163s Setting up python3-lxml:ppc64el (5.3.0-1) ... 163s Setting up libtiff6:ppc64el (4.5.1+git230720-4ubuntu4) ... 163s Setting up xml-core (0.19) ... 163s Setting up python3-contourpy (1.3.0-2build1) ... 163s Setting up libfontconfig1:ppc64el (2.15.0-1.1ubuntu2) ... 163s Setting up liblbfgsb0:ppc64el (3.0+dfsg.4-1build1) ... 163s Setting up libxft2:ppc64el (2.3.6-1build1) ... 163s Setting up python3-scipy (1.13.1-5) ... 167s Setting up libtk8.6:ppc64el (8.6.15-1) ... 167s Setting up python3-pandas-lib:ppc64el (2.2.3+dfsg-5) ... 167s Setting up python3.12-tk (3.12.7-3) ... 167s Setting up python3-sklearn-lib:ppc64el (1.4.2+dfsg-6build1) ... 167s Setting up fonts-urw-base35 (20200910-8) ... 168s Setting up libcairo2:ppc64el (1.18.2-2) ... 168s Setting up python3-pil:ppc64el (10.4.0-1ubuntu1) ... 168s Setting up python3-pandas (2.2.3+dfsg-5) ... 174s Setting up python3-sklearn (1.4.2+dfsg-6build1) ... 176s Setting up tk8.6-blt2.5 (2.5.3+dfsg-7build1) ... 176s Setting up python3-cairo (1.26.1-2) ... 176s Setting up blt (2.5.3+dfsg-7build1) ... 176s Setting up python3-tk:ppc64el (3.12.6-1ubuntu1) ... 176s Setting up python3-pil.imagetk:ppc64el (10.4.0-1ubuntu1) ... 176s Setting up python3-rlpycairo (0.3.0-3) ... 177s Setting up python3-reportlab (4.2.5-1) ... 177s Setting up python3-fonttools (4.46.0-1build2) ... 178s Setting up python3-ufolib2 (0.16.1+dfsg1-1) ... 179s Setting up python3-matplotlib (3.8.3-3) ... 180s Processing triggers for libc-bin (2.40-1ubuntu3) ... 180s Processing triggers for man-db (2.13.0-1) ... 182s Processing triggers for sgml-base (1.31) ... 182s Setting up w3c-sgml-lib (1.3-3) ... 214s Setting up python3-biopython (1.84+dfsg-4) ... 215s Setting up python3-pauvre (0.2.3-4) ... 216s Setting up autopkgtest-satdep (0) ... 220s (Reading database ... 85658 files and directories currently installed.) 220s Removing autopkgtest-satdep (0) ... 220s autopkgtest [20:57:43]: test run-unit-test: [----------------------- 220s 220s #git clone https://github.com/wdecoster/nanotest.git 220s 220s pauvre -h 221s usage: pauvre [-h] [-v] 221s {browser,custommargin,marginplot,redwood,stats,synplot} ... 221s 221s options: 221s -h, --help show this help message and exit 221s -v, --version Installed pauvre version 221s 221s [sub-commands]: 221s {browser,custommargin,marginplot,redwood,stats,synplot} 221s browser an adaptable genome browser with various track types 221s custommargin plot custom marginal histograms of tab-delimited files 221s marginplot plot a marginal histogram of a fastq file 221s redwood make a redwood plot from a bam file 221s stats outputs stats from a fastq file 221s synplot make a synteny plot from a gff file, protein 221s alignment, and partition file 221s 221s pauvre marginplot -h 221s usage: pauvre marginplot [-h] [-q] [--dpi dpi] [-f FASTQ] 221s [--fileform STRING [STRING ...]] 221s [--filt_maxlen FILT_MAXLEN] 221s [--filt_maxqual FILT_MAXQUAL] 221s [--filt_minlen FILT_MINLEN] 221s [--filt_minqual FILT_MINQUAL] [--kmerdf KMERDF] [-n] 221s [--no_timestamp] [-o BASENAME] 221s [--plot_maxlen PLOT_MAXLEN] 221s [--plot_maxqual PLOT_MAXQUAL] 221s [--plot_minlen PLOT_MINLEN] 221s [--plot_minqual PLOT_MINQUAL] [--lengthbin LENGTHBIN] 221s [--qualbin QUALBIN] [-t TITLE] [-y] 221s 221s options: 221s -h, --help show this help message and exit 221s -q, --quiet Do not output warnings to stderr 221s --dpi dpi Change the dpi from the default 600 if you need it 221s higher 221s -f FASTQ, --fastq FASTQ 221s The input FASTQ file. 221s --fileform STRING [STRING ...] 221s Which output format would you like? Def.=png 221s --filt_maxlen FILT_MAXLEN 221s This sets the max read length filter reads. 221s --filt_maxqual FILT_MAXQUAL 221s This sets the max mean read quality to filter reads. 221s --filt_minlen FILT_MINLEN 221s This sets the min read length to filter reads. 221s --filt_minqual FILT_MINQUAL 221s This sets the min mean read quality to filter reads. 221s --kmerdf KMERDF Pass the filename of a data matrix if you would like 221s to plot read length versus number of kmers in that 221s read. The data matrix is a tab-separated text file 221s with columns "id length numks and kmers", where: 221s = read id = the length of the read = 221s the number of canonical kmers in the read = a 221s list representation of kmers ie ['GAT', 'GTA'] 221s -n, --no_transparent Specify this option if you don't want a transparent 221s background. Default is on. 221s --no_timestamp Turn off time stamps in the filename output. 221s -o BASENAME, --output_base_name BASENAME 221s Specify a base name for the output file(s). The input 221s file base name is the default. 221s --plot_maxlen PLOT_MAXLEN 221s Sets the maximum viewing area in the length dimension. 221s --plot_maxqual PLOT_MAXQUAL 221s Sets the maximum viewing area in the quality 221s dimension. 221s --plot_minlen PLOT_MINLEN 221s Sets the minimum viewing area in the length dimension. 221s --plot_minqual PLOT_MINQUAL 221s Sets the minimum viewing area in the quality 221s dimension. 221s --lengthbin LENGTHBIN 221s This sets the bin size to use for length. 221s --qualbin QUALBIN This sets the bin size to use for quality 221s -t TITLE, --title TITLE 221s This sets the title for the whole plot. Use --title 221s "Crustacean's DNA read quality" if you need single 221s quote or apostrophe inside title. 221s -y, --add-yaxes Add Y-axes to both marginal histograms. 221s pauvre marginplot -f nanotest/reads.fastq.gz 224s Keeping reads that satisfy: length >= 0 and meanQual >= 0 224s # Fastq stats for reads.fastq.gz, reads >= 0bp 224s numReads: 371 224s %totalNumReads: 100.00 224s numBasepairs: 8611871 224s %totalBasepairs: 100.00 224s meanLen: 23212.590296495957 224s medianLen: 9390.0 224s minLen: 212 224s maxLen: 393431 224s N50: 60395 224s L50: 36 224s 224s # Fastq stats for reads.fastq.gz, reads >= 1000bp 224s numReads: 349 224s %totalNumReads: 94.07 224s numBasepairs: 8599196 224s %totalBasepairs: 99.85 224s meanLen: 24639.530085959886 224s medianLen: 10585.0 224s minLen: 1009 224s maxLen: 393431 224s N50: 60395 224s L50: 36 224s 224s # Fastq stats for reads.fastq.gz, reads >= 5000bp 224s numReads: 246 224s %totalNumReads: 66.31 224s numBasepairs: 8296771 224s %totalBasepairs: 96.34 224s meanLen: 33726.71138211382 224s medianLen: 17146.0 224s minLen: 5082 224s maxLen: 393431 224s N50: 61111 224s L50: 33 224s 224s # Fastq stats for reads.fastq.gz, reads >= 10000bp 224s numReads: 178 224s %totalNumReads: 47.98 224s numBasepairs: 7817574 224s %totalBasepairs: 90.78 224s meanLen: 43918.95505617977 224s medianLen: 25216.5 224s minLen: 10192 224s maxLen: 393431 224s N50: 67193 224s L50: 30 224s 224s 224s Basepairs >= bin by mean PHRED and length 224s minLen Q7 Q8 Q9 Q10 Q11 Q12 Q13 Q14 224s 0 8611871 7722755 6661156 4720156 2513562 895545 11781 0 224s 250 8611434 7722543 6660944 4719944 2513350 895333 11781 0 224s 500 8608955 7720456 6659643 4718643 2512881 894864 11781 0 224s 750 8604011 7718007 6657705 4717235 2512207 894190 11781 0 224s 1000 8599196 7714763 6654461 4713991 2509728 892515 11781 0 224s 1500 8589389 7708620 6650781 4710311 2507384 892515 11781 0 224s 2000 8554914 7676064 6618225 4682910 2492830 889226 11781 0 224s 2500 8523841 7647182 6591756 4667150 2483798 884829 11781 0 224s 3000 8491143 7627966 6575417 4653398 2480966 884829 11781 0 224s 3500 8446296 7586240 6536848 4617937 2451870 872464 11781 0 224s 4000 8394095 7534039 6484647 4572910 2432856 872464 11781 0 224s 4500 8344217 7488243 6447269 4556363 2424476 864084 11781 0 224s 5000 8296771 7440797 6409287 4528136 2405499 859337 11781 0 224s 5500 8244099 7398741 6367231 4507086 2400051 853889 6333 0 224s 6000 8187360 7347687 6316177 4456032 2377109 842317 6333 0 224s 6500 8118352 7291309 6272099 4418146 2357938 829533 0 0 224s 7000 8077764 7257349 6244869 4404380 2351024 829533 0 0 224s 7500 8034618 7214203 6209041 4383008 2336942 815451 0 0 224s 8000 7988407 7175507 6170345 4351953 2313576 807622 0 0 224s 8500 7938916 7142561 6137399 4327467 2297332 807622 0 0 224s 9000 7912979 7116624 6119996 4310064 2288474 798764 0 0 224s 9500 7857026 7060671 6091684 4300567 2278977 798764 0 0 224s 10000 7817574 7021219 6072011 4290587 2268997 798764 0 0 224s 11000 7722033 6946925 6008613 4237810 2237463 798764 0 0 224s 12000 7618324 6854352 5928031 4191306 2202157 775443 0 0 224s 13000 7417005 6678203 5790564 4116603 2177804 763380 0 0 224s 14000 7335708 6610502 5736644 4062683 2150377 735953 0 0 224s 15000 7277461 6552255 5678397 4004436 2106447 721422 0 0 224s 16000 7216282 6506170 5632312 3973573 2106447 721422 0 0 224s 17000 7099358 6389246 5532373 3890471 2056275 704705 0 0 224s 18000 7028757 6318645 5461772 3819870 1985674 687130 0 0 224s 19000 6954493 6262568 5405695 3782448 1967023 668479 0 0 224s 20000 6875713 6183788 5346904 3743003 1967023 668479 0 0 224s 21000 6752924 6081496 5264907 3681828 1905848 627955 0 0 224s 22000 6645406 6017177 5200588 3639354 1863374 606840 0 0 224s 23000 6555755 5927526 5110937 3571882 1818321 584599 0 0 224s 24000 6509051 5880822 5064233 3525178 1818321 584599 0 0 224s 25000 6410673 5782444 4989966 3475825 1793534 584599 0 0 224s 26000 6360240 5732011 4964634 3475825 1793534 584599 0 0 224s 27000 6254597 5626368 4885462 3423050 1740759 558501 0 0 224s 28000 6171485 5543256 4802350 3395216 1712925 530667 0 0 224s 29000 6029142 5400913 4688628 3281494 1684138 501880 0 0 224s 30000 5882027 5253798 4541513 3163672 1654590 501880 0 0 224s 31000 5821490 5193261 4480976 3103135 1624358 471648 0 0 224s 32000 5758286 5130057 4417772 3039931 1592823 471648 0 0 224s 33000 5726083 5097854 4385569 3007728 1592823 471648 0 0 224s 34000 5726083 5097854 4385569 3007728 1592823 471648 0 0 224s 35000 5657458 5063791 4351506 2973665 1592823 471648 0 0 224s 36000 5550544 4956877 4315610 2937769 1592823 471648 0 0 224s 37000 5440987 4847320 4278774 2900933 1555987 471648 0 0 224s 38000 5440987 4847320 4278774 2900933 1555987 471648 0 0 224s 39000 5402415 4847320 4278774 2900933 1555987 471648 0 0 224s 40000 5402415 4847320 4278774 2900933 1555987 471648 0 0 224s 45000 5193644 4721367 4194028 2860812 1555987 471648 0 0 224s 50000 4960568 4534952 4007613 2674397 1508336 423997 0 0 224s 55000 4750881 4325265 3797926 2464710 1352765 320689 0 0 224s 60000 4344431 3918815 3450507 2293175 1181230 263588 0 0 224s 65000 4101203 3736226 3267918 2171697 1120835 203193 0 0 224s 70000 3833468 3535098 3135269 2039048 1120835 203193 0 0 224s 75000 3470049 3246162 2846333 1893802 975589 203193 0 0 224s 80000 3311125 3087238 2766576 1814045 975589 203193 0 0 224s 85000 3228980 3005093 2684431 1814045 975589 203193 0 0 224s 90000 2967292 2829470 2508808 1726901 888445 203193 0 0 224s 95000 2967292 2829470 2508808 1726901 888445 203193 0 0 224s 100000 2674343 2536521 2215859 1530166 691710 105463 0 0 224s 120000 2232740 2094918 1774256 1189896 468021 0 0 0 224s 140000 1699582 1699582 1378920 930176 341725 0 0 0 224s 160000 1699582 1699582 1378920 930176 341725 0 0 0 224s 180000 1699582 1699582 1378920 930176 341725 0 0 0 224s 200000 1504562 1504562 1183900 735156 341725 0 0 0 224s 220000 1504562 1504562 1183900 735156 341725 0 0 0 224s 240000 1055818 1055818 735156 735156 341725 0 0 0 224s 260000 1055818 1055818 735156 735156 341725 0 0 0 224s 280000 1055818 1055818 735156 735156 341725 0 0 0 224s 300000 1055818 1055818 735156 735156 341725 0 0 0 224s 320000 1055818 1055818 735156 735156 341725 0 0 0 224s 340000 735156 735156 735156 735156 341725 0 0 0 224s 360000 393431 393431 393431 393431 0 0 0 0 224s 380000 393431 393431 393431 393431 0 0 0 0 224s 400000 0 0 0 0 0 0 0 0 224s 224s Number of reads >= bin by mean Phred+Len 224s minLen Q7 Q8 Q9 Q10 Q11 Q12 Q13 Q14 224s 0 371 321 277 207 114 49 2 0 224s 250 369 320 276 206 113 48 2 0 224s 500 363 315 273 203 112 47 2 0 224s 750 355 311 270 201 111 46 2 0 224s 1000 349 307 266 197 108 44 2 0 224s 1500 341 302 263 194 106 44 2 0 224s 2000 322 284 245 179 98 42 2 0 224s 2500 308 271 233 172 94 40 2 0 224s 3000 296 264 227 167 93 40 2 0 224s 3500 282 251 215 156 84 36 2 0 224s 4000 268 237 201 144 79 36 2 0 224s 4500 256 226 192 140 77 34 2 0 224s 5000 246 216 184 134 73 33 2 0 224s 5500 236 208 176 130 72 32 1 0 224s 6000 226 199 167 121 68 30 1 0 224s 6500 215 190 160 115 65 28 0 0 224s 7000 209 185 156 113 64 28 0 0 224s 7500 203 179 151 110 62 26 0 0 224s 8000 197 174 146 106 59 25 0 0 224s 8500 191 170 142 103 57 25 0 0 224s 9000 188 167 140 101 56 24 0 0 224s 9500 182 161 137 100 55 24 0 0 224s 10000 178 157 135 99 54 24 0 0 224s 11000 169 150 129 94 51 24 0 0 224s 12000 160 142 122 90 48 22 0 0 224s 13000 144 128 111 84 46 21 0 0 224s 14000 138 123 107 80 44 19 0 0 224s 15000 134 119 103 76 41 18 0 0 224s 16000 130 116 100 74 41 18 0 0 224s 17000 123 109 94 69 38 17 0 0 224s 18000 119 105 90 65 34 16 0 0 224s 19000 115 102 87 63 33 15 0 0 224s 20000 111 98 84 61 33 15 0 0 224s 21000 105 93 80 58 30 13 0 0 224s 22000 100 90 77 56 28 12 0 0 224s 23000 96 86 73 53 26 11 0 0 224s 24000 94 84 71 51 26 11 0 0 224s 25000 90 80 68 49 25 11 0 0 224s 26000 88 78 67 49 25 11 0 0 224s 27000 84 74 64 47 23 10 0 0 224s 28000 81 71 61 46 22 9 0 0 224s 29000 76 66 57 42 21 8 0 0 224s 30000 71 61 52 38 20 8 0 0 224s 31000 69 59 50 36 19 7 0 0 224s 32000 67 57 48 34 18 7 0 0 224s 33000 66 56 47 33 18 7 0 0 224s 34000 66 56 47 33 18 7 0 0 224s 35000 64 55 46 32 18 7 0 0 224s 36000 61 52 45 31 18 7 0 0 224s 37000 58 49 44 30 17 7 0 0 224s 38000 58 49 44 30 17 7 0 0 224s 39000 57 49 44 30 17 7 0 0 224s 40000 57 49 44 30 17 7 0 0 224s 45000 52 46 42 29 17 7 0 0 224s 50000 47 42 38 25 16 6 0 0 224s 55000 43 38 34 21 13 4 0 0 224s 60000 36 31 28 18 10 3 0 0 224s 65000 32 28 25 16 9 2 0 0 224s 70000 28 25 23 14 9 2 0 0 224s 75000 23 21 19 12 7 2 0 0 224s 80000 21 19 18 11 7 2 0 0 224s 85000 20 18 17 11 7 2 0 0 224s 90000 17 16 15 10 6 2 0 0 224s 95000 17 16 15 10 6 2 0 0 224s 100000 14 13 12 8 4 1 0 0 224s 120000 10 9 8 5 2 0 0 0 224s 140000 6 6 5 3 1 0 0 0 224s 160000 6 6 5 3 1 0 0 0 224s 180000 6 6 5 3 1 0 0 0 224s 200000 5 5 4 2 1 0 0 0 224s 220000 5 5 4 2 1 0 0 0 224s 240000 3 3 2 2 1 0 0 0 224s 260000 3 3 2 2 1 0 0 0 224s 280000 3 3 2 2 1 0 0 0 224s 300000 3 3 2 2 1 0 0 0 224s 320000 3 3 2 2 1 0 0 0 224s 340000 2 2 2 2 1 0 0 0 224s 360000 1 1 1 1 0 0 0 0 224s 380000 1 1 1 1 0 0 0 0 224s 400000 0 0 0 0 0 0 0 0 225s plotting in the following window: 225s 0 <= Q-score (x-axis) <= 14.0 225s 0 <= length (y-axis) <= 223383 226s 226s pauvre marginplot -f nanotest/reads.fastq.gz -t "my title" --filt_maxlen 30000 228s Keeping reads that satisfy: length >= 0 and meanQual >= 0 and length <= 30000 230s plotting in the following window: 230s 0 <= Q-score (x-axis) <= 14.0 230s 0 <= length (y-axis) <= 29294 231s # Fastq stats for reads.fastq.gz, reads >= 0bp 231s numReads: 300 231s %totalNumReads: 100.00 231s numBasepairs: 2729844 231s %totalBasepairs: 100.00 231s meanLen: 9099.48 231s medianLen: 6204.5 231s minLen: 212 231s maxLen: 29590 231s N50: 15222 231s L50: 61 231s 231s # Fastq stats for reads.fastq.gz, reads >= 1000bp 231s numReads: 278 231s %totalNumReads: 92.67 231s numBasepairs: 2717169 231s %totalBasepairs: 99.54 231s meanLen: 9773.989208633093 231s medianLen: 6910.0 231s minLen: 1009 231s maxLen: 29590 231s N50: 15222 231s L50: 61 231s 231s # Fastq stats for reads.fastq.gz, reads >= 5000bp 231s numReads: 175 231s %totalNumReads: 58.33 231s numBasepairs: 2414744 231s %totalBasepairs: 88.46 231s meanLen: 13798.537142857143 231s medianLen: 12063.0 231s minLen: 5082 231s maxLen: 29590 231s N50: 17307 231s L50: 52 231s 231s # Fastq stats for reads.fastq.gz, reads >= 10000bp 231s numReads: 107 231s %totalNumReads: 35.67 231s numBasepairs: 1935547 231s %totalBasepairs: 70.90 231s meanLen: 18089.22429906542 231s medianLen: 16881.0 231s minLen: 10192 231s maxLen: 29590 231s N50: 20295 231s L50: 39 231s 231s 231s Basepairs >= bin by mean PHRED and length 231s minLen Q7 Q8 Q9 Q10 Q11 Q12 Q13 Q14 231s 0 2729844 2468957 2119643 1556484 858972 393665 11781 0 231s 250 2729407 2468745 2119431 1556272 858760 393453 11781 0 231s 500 2726928 2466658 2118130 1554971 858291 392984 11781 0 231s 750 2721984 2464209 2116192 1553563 857617 392310 11781 0 231s 1000 2717169 2460965 2112948 1550319 855138 390635 11781 0 231s 1500 2707362 2454822 2109268 1546639 852794 390635 11781 0 231s 2000 2672887 2422266 2076712 1519238 838240 387346 11781 0 231s 2500 2641814 2393384 2050243 1503478 829208 382949 11781 0 231s 3000 2609116 2374168 2033904 1489726 826376 382949 11781 0 231s 3500 2564269 2332442 1995335 1454265 797280 370584 11781 0 231s 4000 2512068 2280241 1943134 1409238 778266 370584 11781 0 231s 4500 2462190 2234445 1905756 1392691 769886 362204 11781 0 231s 5000 2414744 2186999 1867774 1364464 750909 357457 11781 0 231s 5500 2362072 2144943 1825718 1343414 745461 352009 6333 0 231s 6000 2305333 2093889 1774664 1292360 722519 340437 6333 0 231s 6500 2236325 2037511 1730586 1254474 703348 327653 0 0 231s 7000 2195737 2003551 1703356 1240708 696434 327653 0 0 231s 7500 2152591 1960405 1667528 1219336 682352 313571 0 0 231s 8000 2106380 1921709 1628832 1188281 658986 305742 0 0 231s 8500 2056889 1888763 1595886 1163795 642742 305742 0 0 231s 9000 2030952 1862826 1578483 1146392 633884 296884 0 0 231s 9500 1974999 1806873 1550171 1136895 624387 296884 0 0 231s 10000 1935547 1767421 1530498 1126915 614407 296884 0 0 231s 11000 1840006 1693127 1467100 1074138 582873 296884 0 0 231s 12000 1736297 1600554 1386518 1027634 547567 273563 0 0 231s 13000 1534978 1424405 1249051 952931 523214 261500 0 0 231s 14000 1453681 1356704 1195131 899011 495787 234073 0 0 231s 15000 1395434 1298457 1136884 840764 451857 219542 0 0 231s 16000 1334255 1252372 1090799 809901 451857 219542 0 0 231s 17000 1217331 1135448 990860 726799 401685 202825 0 0 231s 18000 1146730 1064847 920259 656198 331084 185250 0 0 231s 19000 1072466 1008770 864182 618776 312433 166599 0 0 231s 20000 993686 929990 805391 579331 312433 166599 0 0 231s 21000 870897 827698 723394 518156 251258 126075 0 0 231s 22000 763379 763379 659075 475682 208784 104960 0 0 231s 23000 673728 673728 569424 408210 163731 82719 0 0 231s 24000 627024 627024 522720 361506 163731 82719 0 0 231s 25000 528646 528646 448453 312153 138944 82719 0 0 231s 26000 478213 478213 423121 312153 138944 82719 0 0 231s 27000 372570 372570 343949 259378 86169 56621 0 0 231s 28000 289458 289458 260837 231544 58335 28787 0 0 231s 29000 147115 147115 147115 117822 29548 0 0 0 231s 30000 0 0 0 0 0 0 0 0 231s 231s Number of reads >= bin by mean Phred+Len 231s minLen Q7 Q8 Q9 Q10 Q11 Q12 Q13 Q14 231s 0 300 260 225 169 94 41 2 0 231s 250 298 259 224 168 93 40 2 0 231s 500 292 254 221 165 92 39 2 0 231s 750 284 250 218 163 91 38 2 0 231s 1000 278 246 214 159 88 36 2 0 231s 1500 270 241 211 156 86 36 2 0 231s 2000 251 223 193 141 78 34 2 0 231s 2500 237 210 181 134 74 32 2 0 231s 3000 225 203 175 129 73 32 2 0 231s 3500 211 190 163 118 64 28 2 0 231s 4000 197 176 149 106 59 28 2 0 231s 4500 185 165 140 102 57 26 2 0 231s 5000 175 155 132 96 53 25 2 0 231s 5500 165 147 124 92 52 24 1 0 231s 6000 155 138 115 83 48 22 1 0 231s 6500 144 129 108 77 45 20 0 0 231s 7000 138 124 104 75 44 20 0 0 231s 7500 132 118 99 72 42 18 0 0 231s 8000 126 113 94 68 39 17 0 0 231s 8500 120 109 90 65 37 17 0 0 231s 9000 117 106 88 63 36 16 0 0 231s 9500 111 100 85 62 35 16 0 0 231s 10000 107 96 83 61 34 16 0 0 231s 11000 98 89 77 56 31 16 0 0 231s 12000 89 81 70 52 28 14 0 0 231s 13000 73 67 59 46 26 13 0 0 231s 14000 67 62 55 42 24 11 0 0 231s 15000 63 58 51 38 21 10 0 0 231s 16000 59 55 48 36 21 10 0 0 231s 17000 52 48 42 31 18 9 0 0 231s 18000 48 44 38 27 14 8 0 0 231s 19000 44 41 35 25 13 7 0 0 231s 20000 40 37 32 23 13 7 0 0 231s 21000 34 32 28 20 10 5 0 0 231s 22000 29 29 25 18 8 4 0 0 231s 23000 25 25 21 15 6 3 0 0 231s 24000 23 23 19 13 6 3 0 0 231s 25000 19 19 16 11 5 3 0 0 231s 26000 17 17 15 11 5 3 0 0 231s 27000 13 13 12 9 3 2 0 0 231s 28000 10 10 9 8 2 1 0 0 231s 29000 5 5 5 4 1 0 0 0 231s 30000 0 0 0 0 0 0 0 0 231s 231s pauvre marginplot -f nanotest/reads.fastq.gz -y --filt_minqual 7 --fileform svg 233s Keeping reads that satisfy: length >= 0 and meanQual >= 7.0 233s # Fastq stats for reads.fastq.gz, reads >= 0bp 233s numReads: 371 233s %totalNumReads: 100.00 233s numBasepairs: 8611871 233s %totalBasepairs: 100.00 233s meanLen: 23212.590296495957 233s medianLen: 9390.0 233s minLen: 212 233s maxLen: 393431 233s N50: 60395 233s L50: 36 233s 233s # Fastq stats for reads.fastq.gz, reads >= 1000bp 233s numReads: 349 233s %totalNumReads: 94.07 233s numBasepairs: 8599196 233s %totalBasepairs: 99.85 233s meanLen: 24639.530085959886 233s medianLen: 10585.0 233s minLen: 1009 233s maxLen: 393431 233s N50: 60395 233s L50: 36 233s 233s # Fastq stats for reads.fastq.gz, reads >= 5000bp 233s numReads: 246 233s %totalNumReads: 66.31 233s numBasepairs: 8296771 233s %totalBasepairs: 96.34 233s meanLen: 33726.71138211382 233s medianLen: 17146.0 233s minLen: 5082 233s maxLen: 393431 233s N50: 61111 233s L50: 33 233s 233s # Fastq stats for reads.fastq.gz, reads >= 10000bp 233s numReads: 178 233s %totalNumReads: 47.98 233s numBasepairs: 7817574 233s %totalBasepairs: 90.78 233s meanLen: 43918.95505617977 233s medianLen: 25216.5 233s minLen: 10192 233s maxLen: 393431 233s N50: 67193 233s L50: 30 233s 233s 233s Basepairs >= bin by mean PHRED and length 233s minLen Q7 Q8 Q9 Q10 Q11 Q12 Q13 Q14 233s 0 8611871 7722755 6661156 4720156 2513562 895545 11781 0 233s 250 8611434 7722543 6660944 4719944 2513350 895333 11781 0 233s 500 8608955 7720456 6659643 4718643 2512881 894864 11781 0 233s 750 8604011 7718007 6657705 4717235 2512207 894190 11781 0 233s 1000 8599196 7714763 6654461 4713991 2509728 892515 11781 0 233s 1500 8589389 7708620 6650781 4710311 2507384 892515 11781 0 233s 2000 8554914 7676064 6618225 4682910 2492830 889226 11781 0 233s 2500 8523841 7647182 6591756 4667150 2483798 884829 11781 0 233s 3000 8491143 7627966 6575417 4653398 2480966 884829 11781 0 233s 3500 8446296 7586240 6536848 4617937 2451870 872464 11781 0 233s 4000 8394095 7534039 6484647 4572910 2432856 872464 11781 0 233s 4500 8344217 7488243 6447269 4556363 2424476 864084 11781 0 233s 5000 8296771 7440797 6409287 4528136 2405499 859337 11781 0 233s 5500 8244099 7398741 6367231 4507086 2400051 853889 6333 0 233s 6000 8187360 7347687 6316177 4456032 2377109 842317 6333 0 233s 6500 8118352 7291309 6272099 4418146 2357938 829533 0 0 233s 7000 8077764 7257349 6244869 4404380 2351024 829533 0 0 233s 7500 8034618 7214203 6209041 4383008 2336942 815451 0 0 233s 8000 7988407 7175507 6170345 4351953 2313576 807622 0 0 233s 8500 7938916 7142561 6137399 4327467 2297332 807622 0 0 233s 9000 7912979 7116624 6119996 4310064 2288474 798764 0 0 233s 9500 7857026 7060671 6091684 4300567 2278977 798764 0 0 233s 10000 7817574 7021219 6072011 4290587 2268997 798764 0 0 233s 11000 7722033 6946925 6008613 4237810 2237463 798764 0 0 233s 12000 7618324 6854352 5928031 4191306 2202157 775443 0 0 233s 13000 7417005 6678203 5790564 4116603 2177804 763380 0 0 233s 14000 7335708 6610502 5736644 4062683 2150377 735953 0 0 233s 15000 7277461 6552255 5678397 4004436 2106447 721422 0 0 233s 16000 7216282 6506170 5632312 3973573 2106447 721422 0 0 233s 17000 7099358 6389246 5532373 3890471 2056275 704705 0 0 233s 18000 7028757 6318645 5461772 3819870 1985674 687130 0 0 233s 19000 6954493 6262568 5405695 3782448 1967023 668479 0 0 233s 20000 6875713 6183788 5346904 3743003 1967023 668479 0 0 233s 21000 6752924 6081496 5264907 3681828 1905848 627955 0 0 233s 22000 6645406 6017177 5200588 3639354 1863374 606840 0 0 233s 23000 6555755 5927526 5110937 3571882 1818321 584599 0 0 233s 24000 6509051 5880822 5064233 3525178 1818321 584599 0 0 233s 25000 6410673 5782444 4989966 3475825 1793534 584599 0 0 233s 26000 6360240 5732011 4964634 3475825 1793534 584599 0 0 233s 27000 6254597 5626368 4885462 3423050 1740759 558501 0 0 233s 28000 6171485 5543256 4802350 3395216 1712925 530667 0 0 233s 29000 6029142 5400913 4688628 3281494 1684138 501880 0 0 233s 30000 5882027 5253798 4541513 3163672 1654590 501880 0 0 233s 31000 5821490 5193261 4480976 3103135 1624358 471648 0 0 233s 32000 5758286 5130057 4417772 3039931 1592823 471648 0 0 233s 33000 5726083 5097854 4385569 3007728 1592823 471648 0 0 233s 34000 5726083 5097854 4385569 3007728 1592823 471648 0 0 233s 35000 5657458 5063791 4351506 2973665 1592823 471648 0 0 233s 36000 5550544 4956877 4315610 2937769 1592823 471648 0 0 233s 37000 5440987 4847320 4278774 2900933 1555987 471648 0 0 233s 38000 5440987 4847320 4278774 2900933 1555987 471648 0 0 233s 39000 5402415 4847320 4278774 2900933 1555987 471648 0 0 233s 40000 5402415 4847320 4278774 2900933 1555987 471648 0 0 233s 45000 5193644 4721367 4194028 2860812 1555987 471648 0 0 233s 50000 4960568 4534952 4007613 2674397 1508336 423997 0 0 233s 55000 4750881 4325265 3797926 2464710 1352765 320689 0 0 233s 60000 4344431 3918815 3450507 2293175 1181230 263588 0 0 233s 65000 4101203 3736226 3267918 2171697 1120835 203193 0 0 233s 70000 3833468 3535098 3135269 2039048 1120835 203193 0 0 233s 75000 3470049 3246162 2846333 1893802 975589 203193 0 0 233s 80000 3311125 3087238 2766576 1814045 975589 203193 0 0 233s 85000 3228980 3005093 2684431 1814045 975589 203193 0 0 233s 90000 2967292 2829470 2508808 1726901 888445 203193 0 0 233s 95000 2967292 2829470 2508808 1726901 888445 203193 0 0 233s 100000 2674343 2536521 2215859 1530166 691710 105463 0 0 233s 120000 2232740 2094918 1774256 1189896 468021 0 0 0 233s 140000 1699582 1699582 1378920 930176 341725 0 0 0 233s 160000 1699582 1699582 1378920 930176 341725 0 0 0 233s 180000 1699582 1699582 1378920 930176 341725 0 0 0 233s 200000 1504562 1504562 1183900 735156 341725 0 0 0 233s 220000 1504562 1504562 1183900 735156 341725 0 0 0 233s 240000 1055818 1055818 735156 735156 341725 0 0 0 233s 260000 1055818 1055818 735156 735156 341725 0 0 0 233s 280000 1055818 1055818 735156 735156 341725 0 0 0 233s 300000 1055818 1055818 735156 735156 341725 0 0 0 233s 320000 1055818 1055818 735156 735156 341725 0 0 0 233s 340000 735156 735156 735156 735156 341725 0 0 0 233s 360000 393431 393431 393431 393431 0 0 0 0 233s 380000 393431 393431 393431 393431 0 0 0 0 233s 400000 0 0 0 0 0 0 0 0 233s 233s Number of reads >= bin by mean Phred+Len 233s minLen Q7 Q8 Q9 Q10 Q11 Q12 Q13 Q14 233s 0 371 321 277 207 114 49 2 0 233s 250 369 320 276 206 113 48 2 0 233s 500 363 315 273 203 112 47 2 0 233s 750 355 311 270 201 111 46 2 0 233s 1000 349 307 266 197 108 44 2 0 233s 1500 341 302 263 194 106 44 2 0 233s 2000 322 284 245 179 98 42 2 0 233s 2500 308 271 233 172 94 40 2 0 233s 3000 296 264 227 167 93 40 2 0 233s 3500 282 251 215 156 84 36 2 0 233s 4000 268 237 201 144 79 36 2 0 233s 4500 256 226 192 140 77 34 2 0 233s 5000 246 216 184 134 73 33 2 0 233s 5500 236 208 176 130 72 32 1 0 233s 6000 226 199 167 121 68 30 1 0 233s 6500 215 190 160 115 65 28 0 0 233s 7000 209 185 156 113 64 28 0 0 233s 7500 203 179 151 110 62 26 0 0 233s 8000 197 174 146 106 59 25 0 0 233s 8500 191 170 142 103 57 25 0 0 233s 9000 188 167 140 101 56 24 0 0 233s 9500 182 161 137 100 55 24 0 0 233s 10000 178 157 135 99 54 24 0 0 233s 11000 169 150 129 94 51 24 0 0 233s 12000 160 142 122 90 48 22 0 0 233s 13000 144 128 111 84 46 21 0 0 233s 14000 138 123 107 80 44 19 0 0 233s 15000 134 119 103 76 41 18 0 0 233s 16000 130 116 100 74 41 18 0 0 233s 17000 123 109 94 69 38 17 0 0 233s 18000 119 105 90 65 34 16 0 0 233s 19000 115 102 87 63 33 15 0 0 233s 20000 111 98 84 61 33 15 0 0 233s 21000 105 93 80 58 30 13 0 0 233s 22000 100 90 77 56 28 12 0 0 233s 23000 96 86 73 53 26 11 0 0 233s 24000 94 84 71 51 26 11 0 0 233s 25000 90 80 68 49 25 11 0 0 233s 26000 88 78 67 49 25 11 0 0 233s 27000 84 74 64 47 23 10 0 0 233s 28000 81 71 61 46 22 9 0 0 233s 29000 76 66 57 42 21 8 0 0 233s 30000 71 61 52 38 20 8 0 0 233s 31000 69 59 50 36 19 7 0 0 233s 32000 67 57 48 34 18 7 0 0 233s 33000 66 56 47 33 18 7 0 0 233s 34000 66 56 47 33 18 7 0 0 233s 35000 64 55 46 32 18 7 0 0 233s 36000 61 52 45 31 18 7 0 0 233s 37000 58 49 44 30 17 7 0 0 233s 38000 58 49 44 30 17 7 0 0 233s 39000 57 49 44 30 17 7 0 0 233s 40000 57 49 44 30 17 7 0 0 233s 45000 52 46 42 29 17 7 0 0 233s 50000 47 42 38 25 16 6 0 0 233s 55000 43 38 34 21 13 4 0 0 233s 60000 36 31 28 18 10 3 0 0 233s 65000 32 28 25 16 9 2 0 0 233s 70000 28 25 23 14 9 2 0 0 233s 75000 23 21 19 12 7 2 0 0 233s 80000 21 19 18 11 7 2 0 0 233s 85000 20 18 17 11 7 2 0 0 233s 90000 17 16 15 10 6 2 0 0 233s 95000 17 16 15 10 6 2 0 0 233s 100000 14 13 12 8 4 1 0 0 233s 120000 10 9 8 5 2 0 0 0 233s 140000 6 6 5 3 1 0 0 0 233s 160000 6 6 5 3 1 0 0 0 233s 180000 6 6 5 3 1 0 0 0 233s 200000 5 5 4 2 1 0 0 0 233s 220000 5 5 4 2 1 0 0 0 233s 240000 3 3 2 2 1 0 0 0 233s 260000 3 3 2 2 1 0 0 0 233s 280000 3 3 2 2 1 0 0 0 233s 300000 3 3 2 2 1 0 0 0 233s 320000 3 3 2 2 1 0 0 0 233s 340000 2 2 2 2 1 0 0 0 233s 360000 1 1 1 1 0 0 0 0 233s 380000 1 1 1 1 0 0 0 0 233s 400000 0 0 0 0 0 0 0 0 234s plotting in the following window: 234s 0 <= Q-score (x-axis) <= 14.0 234s 0 <= length (y-axis) <= 223383 235s 235s 235s pauvre stats -h 235s usage: pauvre stats [-h] [-q] [-f FASTQ] [-H] [--filt_maxlen FILT_MAXLEN] 235s [--filt_maxqual FILT_MAXQUAL] [--filt_minlen FILT_MINLEN] 235s [--filt_minqual FILT_MINQUAL] 235s 235s options: 235s -h, --help show this help message and exit 235s -q, --quiet Do not output warnings to stderr 235s -f FASTQ, --fastq FASTQ 235s The input FASTQ file. 235s -H, --histogram Make a histogram of the read lengths and saves it to a 235s new file 235s --filt_maxlen FILT_MAXLEN 235s This sets the max read length filter reads. 235s --filt_maxqual FILT_MAXQUAL 235s This sets the max mean read quality to filter reads. 235s --filt_minlen FILT_MINLEN 235s This sets the min read length to filter reads. 235s --filt_minqual FILT_MINQUAL 235s This sets the min mean read quality to filter reads. 235s pauvre stats -f nanotest/reads.fastq.gz 238s # Fastq stats for reads.fastq.gz, reads >= 0bp 238s numReads: 371 238s %totalNumReads: 100.00 238s numBasepairs: 8611871 238s %totalBasepairs: 100.00 238s meanLen: 23212.590296495957 238s medianLen: 9390.0 238s minLen: 212 238s maxLen: 393431 238s N50: 60395 238s L50: 36 238s 238s # Fastq stats for reads.fastq.gz, reads >= 1000bp 238s numReads: 349 238s %totalNumReads: 94.07 238s numBasepairs: 8599196 238s %totalBasepairs: 99.85 238s meanLen: 24639.530085959886 238s medianLen: 10585.0 238s minLen: 1009 238s maxLen: 393431 238s N50: 60395 238s L50: 36 238s 238s # Fastq stats for reads.fastq.gz, reads >= 5000bp 238s numReads: 246 238s %totalNumReads: 66.31 238s numBasepairs: 8296771 238s %totalBasepairs: 96.34 238s meanLen: 33726.71138211382 238s medianLen: 17146.0 238s minLen: 5082 238s maxLen: 393431 238s N50: 61111 238s L50: 33 238s 238s # Fastq stats for reads.fastq.gz, reads >= 10000bp 238s numReads: 178 238s %totalNumReads: 47.98 238s numBasepairs: 7817574 238s %totalBasepairs: 90.78 238s meanLen: 43918.95505617977 238s medianLen: 25216.5 238s minLen: 10192 238s maxLen: 393431 238s N50: 67193 238s L50: 30 238s 238s 238s Basepairs >= bin by mean PHRED and length 238s minLen Q7 Q8 Q9 Q10 Q11 Q12 Q13 Q14 238s 0 8611871 7722755 6661156 4720156 2513562 895545 11781 0 238s 250 8611434 7722543 6660944 4719944 2513350 895333 11781 0 238s 500 8608955 7720456 6659643 4718643 2512881 894864 11781 0 238s 750 8604011 7718007 6657705 4717235 2512207 894190 11781 0 238s 1000 8599196 7714763 6654461 4713991 2509728 892515 11781 0 238s 1500 8589389 7708620 6650781 4710311 2507384 892515 11781 0 238s 2000 8554914 7676064 6618225 4682910 2492830 889226 11781 0 238s 2500 8523841 7647182 6591756 4667150 2483798 884829 11781 0 238s 3000 8491143 7627966 6575417 4653398 2480966 884829 11781 0 238s 3500 8446296 7586240 6536848 4617937 2451870 872464 11781 0 238s 4000 8394095 7534039 6484647 4572910 2432856 872464 11781 0 238s 4500 8344217 7488243 6447269 4556363 2424476 864084 11781 0 238s 5000 8296771 7440797 6409287 4528136 2405499 859337 11781 0 238s 5500 8244099 7398741 6367231 4507086 2400051 853889 6333 0 238s 6000 8187360 7347687 6316177 4456032 2377109 842317 6333 0 238s 6500 8118352 7291309 6272099 4418146 2357938 829533 0 0 238s 7000 8077764 7257349 6244869 4404380 2351024 829533 0 0 238s 7500 8034618 7214203 6209041 4383008 2336942 815451 0 0 238s 8000 7988407 7175507 6170345 4351953 2313576 807622 0 0 238s 8500 7938916 7142561 6137399 4327467 2297332 807622 0 0 238s 9000 7912979 7116624 6119996 4310064 2288474 798764 0 0 238s 9500 7857026 7060671 6091684 4300567 2278977 798764 0 0 238s 10000 7817574 7021219 6072011 4290587 2268997 798764 0 0 238s 11000 7722033 6946925 6008613 4237810 2237463 798764 0 0 238s 12000 7618324 6854352 5928031 4191306 2202157 775443 0 0 238s 13000 7417005 6678203 5790564 4116603 2177804 763380 0 0 238s 14000 7335708 6610502 5736644 4062683 2150377 735953 0 0 238s 15000 7277461 6552255 5678397 4004436 2106447 721422 0 0 238s 16000 7216282 6506170 5632312 3973573 2106447 721422 0 0 238s 17000 7099358 6389246 5532373 3890471 2056275 704705 0 0 238s 18000 7028757 6318645 5461772 3819870 1985674 687130 0 0 238s 19000 6954493 6262568 5405695 3782448 1967023 668479 0 0 238s 20000 6875713 6183788 5346904 3743003 1967023 668479 0 0 238s 21000 6752924 6081496 5264907 3681828 1905848 627955 0 0 238s 22000 6645406 6017177 5200588 3639354 1863374 606840 0 0 238s 23000 6555755 5927526 5110937 3571882 1818321 584599 0 0 238s 24000 6509051 5880822 5064233 3525178 1818321 584599 0 0 238s 25000 6410673 5782444 4989966 3475825 1793534 584599 0 0 238s 26000 6360240 5732011 4964634 3475825 1793534 584599 0 0 238s 27000 6254597 5626368 4885462 3423050 1740759 558501 0 0 238s 28000 6171485 5543256 4802350 3395216 1712925 530667 0 0 238s 29000 6029142 5400913 4688628 3281494 1684138 501880 0 0 238s 30000 5882027 5253798 4541513 3163672 1654590 501880 0 0 238s 31000 5821490 5193261 4480976 3103135 1624358 471648 0 0 238s 32000 5758286 5130057 4417772 3039931 1592823 471648 0 0 238s 33000 5726083 5097854 4385569 3007728 1592823 471648 0 0 238s 34000 5726083 5097854 4385569 3007728 1592823 471648 0 0 238s 35000 5657458 5063791 4351506 2973665 1592823 471648 0 0 238s 36000 5550544 4956877 4315610 2937769 1592823 471648 0 0 238s 37000 5440987 4847320 4278774 2900933 1555987 471648 0 0 238s 38000 5440987 4847320 4278774 2900933 1555987 471648 0 0 238s 39000 5402415 4847320 4278774 2900933 1555987 471648 0 0 238s 40000 5402415 4847320 4278774 2900933 1555987 471648 0 0 238s 45000 5193644 4721367 4194028 2860812 1555987 471648 0 0 238s 50000 4960568 4534952 4007613 2674397 1508336 423997 0 0 238s 55000 4750881 4325265 3797926 2464710 1352765 320689 0 0 238s 60000 4344431 3918815 3450507 2293175 1181230 263588 0 0 238s 65000 4101203 3736226 3267918 2171697 1120835 203193 0 0 238s 70000 3833468 3535098 3135269 2039048 1120835 203193 0 0 238s 75000 3470049 3246162 2846333 1893802 975589 203193 0 0 238s 80000 3311125 3087238 2766576 1814045 975589 203193 0 0 238s 85000 3228980 3005093 2684431 1814045 975589 203193 0 0 238s 90000 2967292 2829470 2508808 1726901 888445 203193 0 0 238s 95000 2967292 2829470 2508808 1726901 888445 203193 0 0 238s 100000 2674343 2536521 2215859 1530166 691710 105463 0 0 238s 120000 2232740 2094918 1774256 1189896 468021 0 0 0 238s 140000 1699582 1699582 1378920 930176 341725 0 0 0 238s 160000 1699582 1699582 1378920 930176 341725 0 0 0 238s 180000 1699582 1699582 1378920 930176 341725 0 0 0 238s 200000 1504562 1504562 1183900 735156 341725 0 0 0 238s 220000 1504562 1504562 1183900 735156 341725 0 0 0 238s 240000 1055818 1055818 735156 735156 341725 0 0 0 238s 260000 1055818 1055818 735156 735156 341725 0 0 0 238s 280000 1055818 1055818 735156 735156 341725 0 0 0 238s 300000 1055818 1055818 735156 735156 341725 0 0 0 238s 320000 1055818 1055818 735156 735156 341725 0 0 0 238s 340000 735156 735156 735156 735156 341725 0 0 0 238s 360000 393431 393431 393431 393431 0 0 0 0 238s 380000 393431 393431 393431 393431 0 0 0 0 238s 400000 0 0 0 0 0 0 0 0 238s 238s Number of reads >= bin by mean Phred+Len 238s minLen Q7 Q8 Q9 Q10 Q11 Q12 Q13 Q14 238s 0 371 321 277 207 114 49 2 0 238s 250 369 320 276 206 113 48 2 0 238s 500 363 315 273 203 112 47 2 0 238s 750 355 311 270 201 111 46 2 0 238s 1000 349 307 266 197 108 44 2 0 238s 1500 341 302 263 194 106 44 2 0 238s 2000 322 284 245 179 98 42 2 0 238s 2500 308 271 233 172 94 40 2 0 238s 3000 296 264 227 167 93 40 2 0 238s 3500 282 251 215 156 84 36 2 0 238s 4000 268 237 201 144 79 36 2 0 238s 4500 256 226 192 140 77 34 2 0 238s 5000 246 216 184 134 73 33 2 0 238s 5500 236 208 176 130 72 32 1 0 238s 6000 226 199 167 121 68 30 1 0 238s 6500 215 190 160 115 65 28 0 0 238s 7000 209 185 156 113 64 28 0 0 238s 7500 203 179 151 110 62 26 0 0 238s 8000 197 174 146 106 59 25 0 0 238s 8500 191 170 142 103 57 25 0 0 238s 9000 188 167 140 101 56 24 0 0 238s 9500 182 161 137 100 55 24 0 0 238s 10000 178 157 135 99 54 24 0 0 238s 11000 169 150 129 94 51 24 0 0 238s 12000 160 142 122 90 48 22 0 0 238s 13000 144 128 111 84 46 21 0 0 238s 14000 138 123 107 80 44 19 0 0 238s 15000 134 119 103 76 41 18 0 0 238s 16000 130 116 100 74 41 18 0 0 238s 17000 123 109 94 69 38 17 0 0 238s 18000 119 105 90 65 34 16 0 0 238s 19000 115 102 87 63 33 15 0 0 238s 20000 111 98 84 61 33 15 0 0 238s 21000 105 93 80 58 30 13 0 0 238s 22000 100 90 77 56 28 12 0 0 238s 23000 96 86 73 53 26 11 0 0 238s 24000 94 84 71 51 26 11 0 0 238s 25000 90 80 68 49 25 11 0 0 238s 26000 88 78 67 49 25 11 0 0 238s 27000 84 74 64 47 23 10 0 0 238s 28000 81 71 61 46 22 9 0 0 238s 29000 76 66 57 42 21 8 0 0 238s 30000 71 61 52 38 20 8 0 0 238s 31000 69 59 50 36 19 7 0 0 238s 32000 67 57 48 34 18 7 0 0 238s 33000 66 56 47 33 18 7 0 0 238s 34000 66 56 47 33 18 7 0 0 238s 35000 64 55 46 32 18 7 0 0 238s 36000 61 52 45 31 18 7 0 0 238s 37000 58 49 44 30 17 7 0 0 238s 38000 58 49 44 30 17 7 0 0 238s 39000 57 49 44 30 17 7 0 0 238s 40000 57 49 44 30 17 7 0 0 238s 45000 52 46 42 29 17 7 0 0 238s 50000 47 42 38 25 16 6 0 0 238s 55000 43 38 34 21 13 4 0 0 238s 60000 36 31 28 18 10 3 0 0 238s 65000 32 28 25 16 9 2 0 0 238s 70000 28 25 23 14 9 2 0 0 238s 75000 23 21 19 12 7 2 0 0 238s 80000 21 19 18 11 7 2 0 0 238s 85000 20 18 17 11 7 2 0 0 238s 90000 17 16 15 10 6 2 0 0 238s 95000 17 16 15 10 6 2 0 0 238s 100000 14 13 12 8 4 1 0 0 238s 120000 10 9 8 5 2 0 0 0 238s 140000 6 6 5 3 1 0 0 0 238s 160000 6 6 5 3 1 0 0 0 238s 180000 6 6 5 3 1 0 0 0 238s 200000 5 5 4 2 1 0 0 0 238s 220000 5 5 4 2 1 0 0 0 238s 240000 3 3 2 2 1 0 0 0 238s 260000 3 3 2 2 1 0 0 0 238s 280000 3 3 2 2 1 0 0 0 238s 300000 3 3 2 2 1 0 0 0 238s 320000 3 3 2 2 1 0 0 0 238s 340000 2 2 2 2 1 0 0 0 238s 360000 1 1 1 1 0 0 0 0 238s 380000 1 1 1 1 0 0 0 0 238s 400000 0 0 0 0 0 0 0 0 238s 238s pauvre stats -f nanotest/reads.fastq.gz -H --filt_maxqual 12 241s # Fastq stats for reads.fastq.gz, reads >= 0bp 241s numReads: 371 241s %totalNumReads: 100.00 241s numBasepairs: 8611871 241s %totalBasepairs: 100.00 241s meanLen: 23212.590296495957 241s medianLen: 9390.0 241s minLen: 212 241s maxLen: 393431 241s N50: 60395 241s L50: 36 241s 241s # Fastq stats for reads.fastq.gz, reads >= 1000bp 241s numReads: 349 241s %totalNumReads: 94.07 241s numBasepairs: 8599196 241s %totalBasepairs: 99.85 241s meanLen: 24639.530085959886 241s medianLen: 10585.0 241s minLen: 1009 241s maxLen: 393431 241s N50: 60395 241s L50: 36 241s 241s # Fastq stats for reads.fastq.gz, reads >= 5000bp 241s numReads: 246 241s %totalNumReads: 66.31 241s numBasepairs: 8296771 241s %totalBasepairs: 96.34 241s meanLen: 33726.71138211382 241s medianLen: 17146.0 241s minLen: 5082 241s maxLen: 393431 241s N50: 61111 241s L50: 33 241s 241s # Fastq stats for reads.fastq.gz, reads >= 10000bp 241s numReads: 178 241s %totalNumReads: 47.98 241s numBasepairs: 7817574 241s %totalBasepairs: 90.78 241s meanLen: 43918.95505617977 241s medianLen: 25216.5 241s minLen: 10192 241s maxLen: 393431 241s N50: 67193 241s L50: 30 241s 241s 241s Basepairs >= bin by mean PHRED and length 241s minLen Q7 Q8 Q9 Q10 Q11 Q12 Q13 Q14 241s 0 8611871 7722755 6661156 4720156 2513562 895545 11781 0 241s 250 8611434 7722543 6660944 4719944 2513350 895333 11781 0 241s 500 8608955 7720456 6659643 4718643 2512881 894864 11781 0 241s 750 8604011 7718007 6657705 4717235 2512207 894190 11781 0 241s 1000 8599196 7714763 6654461 4713991 2509728 892515 11781 0 241s 1500 8589389 7708620 6650781 4710311 2507384 892515 11781 0 241s 2000 8554914 7676064 6618225 4682910 2492830 889226 11781 0 241s 2500 8523841 7647182 6591756 4667150 2483798 884829 11781 0 241s 3000 8491143 7627966 6575417 4653398 2480966 884829 11781 0 241s 3500 8446296 7586240 6536848 4617937 2451870 872464 11781 0 241s 4000 8394095 7534039 6484647 4572910 2432856 872464 11781 0 241s 4500 8344217 7488243 6447269 4556363 2424476 864084 11781 0 241s 5000 8296771 7440797 6409287 4528136 2405499 859337 11781 0 241s 5500 8244099 7398741 6367231 4507086 2400051 853889 6333 0 241s 6000 8187360 7347687 6316177 4456032 2377109 842317 6333 0 241s 6500 8118352 7291309 6272099 4418146 2357938 829533 0 0 241s 7000 8077764 7257349 6244869 4404380 2351024 829533 0 0 241s 7500 8034618 7214203 6209041 4383008 2336942 815451 0 0 241s 8000 7988407 7175507 6170345 4351953 2313576 807622 0 0 241s 8500 7938916 7142561 6137399 4327467 2297332 807622 0 0 241s 9000 7912979 7116624 6119996 4310064 2288474 798764 0 0 241s 9500 7857026 7060671 6091684 4300567 2278977 798764 0 0 241s 10000 7817574 7021219 6072011 4290587 2268997 798764 0 0 241s 11000 7722033 6946925 6008613 4237810 2237463 798764 0 0 241s 12000 7618324 6854352 5928031 4191306 2202157 775443 0 0 241s 13000 7417005 6678203 5790564 4116603 2177804 763380 0 0 241s 14000 7335708 6610502 5736644 4062683 2150377 735953 0 0 241s 15000 7277461 6552255 5678397 4004436 2106447 721422 0 0 241s 16000 7216282 6506170 5632312 3973573 2106447 721422 0 0 241s 17000 7099358 6389246 5532373 3890471 2056275 704705 0 0 241s 18000 7028757 6318645 5461772 3819870 1985674 687130 0 0 241s 19000 6954493 6262568 5405695 3782448 1967023 668479 0 0 241s 20000 6875713 6183788 5346904 3743003 1967023 668479 0 0 241s 21000 6752924 6081496 5264907 3681828 1905848 627955 0 0 241s 22000 6645406 6017177 5200588 3639354 1863374 606840 0 0 241s 23000 6555755 5927526 5110937 3571882 1818321 584599 0 0 241s 24000 6509051 5880822 5064233 3525178 1818321 584599 0 0 241s 25000 6410673 5782444 4989966 3475825 1793534 584599 0 0 241s 26000 6360240 5732011 4964634 3475825 1793534 584599 0 0 241s 27000 6254597 5626368 4885462 3423050 1740759 558501 0 0 241s 28000 6171485 5543256 4802350 3395216 1712925 530667 0 0 241s 29000 6029142 5400913 4688628 3281494 1684138 501880 0 0 241s 30000 5882027 5253798 4541513 3163672 1654590 501880 0 0 241s 31000 5821490 5193261 4480976 3103135 1624358 471648 0 0 241s 32000 5758286 5130057 4417772 3039931 1592823 471648 0 0 241s 33000 5726083 5097854 4385569 3007728 1592823 471648 0 0 241s 34000 5726083 5097854 4385569 3007728 1592823 471648 0 0 241s 35000 5657458 5063791 4351506 2973665 1592823 471648 0 0 241s 36000 5550544 4956877 4315610 2937769 1592823 471648 0 0 241s 37000 5440987 4847320 4278774 2900933 1555987 471648 0 0 241s 38000 5440987 4847320 4278774 2900933 1555987 471648 0 0 241s 39000 5402415 4847320 4278774 2900933 1555987 471648 0 0 241s 40000 5402415 4847320 4278774 2900933 1555987 471648 0 0 241s 45000 5193644 4721367 4194028 2860812 1555987 471648 0 0 241s 50000 4960568 4534952 4007613 2674397 1508336 423997 0 0 241s 55000 4750881 4325265 3797926 2464710 1352765 320689 0 0 241s 60000 4344431 3918815 3450507 2293175 1181230 263588 0 0 241s 65000 4101203 3736226 3267918 2171697 1120835 203193 0 0 241s 70000 3833468 3535098 3135269 2039048 1120835 203193 0 0 241s 75000 3470049 3246162 2846333 1893802 975589 203193 0 0 241s 80000 3311125 3087238 2766576 1814045 975589 203193 0 0 241s 85000 3228980 3005093 2684431 1814045 975589 203193 0 0 241s 90000 2967292 2829470 2508808 1726901 888445 203193 0 0 241s 95000 2967292 2829470 2508808 1726901 888445 203193 0 0 241s 100000 2674343 2536521 2215859 1530166 691710 105463 0 0 241s 120000 2232740 2094918 1774256 1189896 468021 0 0 0 241s 140000 1699582 1699582 1378920 930176 341725 0 0 0 241s 160000 1699582 1699582 1378920 930176 341725 0 0 0 241s 180000 1699582 1699582 1378920 930176 341725 0 0 0 241s 200000 1504562 1504562 1183900 735156 341725 0 0 0 241s 220000 1504562 1504562 1183900 735156 341725 0 0 0 241s 240000 1055818 1055818 735156 735156 341725 0 0 0 241s 260000 1055818 1055818 735156 735156 341725 0 0 0 241s 280000 1055818 1055818 735156 735156 341725 0 0 0 241s 300000 1055818 1055818 735156 735156 341725 0 0 0 241s 320000 1055818 1055818 735156 735156 341725 0 0 0 241s 340000 735156 735156 735156 735156 341725 0 0 0 241s 360000 393431 393431 393431 393431 0 0 0 0 241s 380000 393431 393431 393431 393431 0 0 0 0 241s 400000 0 0 0 0 0 0 0 0 241s 241s Number of reads >= bin by mean Phred+Len 241s minLen Q7 Q8 Q9 Q10 Q11 Q12 Q13 Q14 241s 0 371 321 277 207 114 49 2 0 241s 250 369 320 276 206 113 48 2 0 241s 500 363 315 273 203 112 47 2 0 241s 750 355 311 270 201 111 46 2 0 241s 1000 349 307 266 197 108 44 2 0 241s 1500 341 302 263 194 106 44 2 0 241s 2000 322 284 245 179 98 42 2 0 241s 2500 308 271 233 172 94 40 2 0 241s 3000 296 264 227 167 93 40 2 0 241s 3500 282 251 215 156 84 36 2 0 241s 4000 268 237 201 144 79 36 2 0 241s 4500 256 226 192 140 77 34 2 0 241s 5000 246 216 184 134 73 33 2 0 241s 5500 236 208 176 130 72 32 1 0 241s 6000 226 199 167 121 68 30 1 0 241s 6500 215 190 160 115 65 28 0 0 241s 7000 209 185 156 113 64 28 0 0 241s 7500 203 179 151 110 62 26 0 0 241s 8000 197 174 146 106 59 25 0 0 241s 8500 191 170 142 103 57 25 0 0 241s 9000 188 167 140 101 56 24 0 0 241s 9500 182 161 137 100 55 24 0 0 241s 10000 178 157 135 99 54 24 0 0 241s 11000 169 150 129 94 51 24 0 0 241s 12000 160 142 122 90 48 22 0 0 241s 13000 144 128 111 84 46 21 0 0 241s 14000 138 123 107 80 44 19 0 0 241s 15000 134 119 103 76 41 18 0 0 241s 16000 130 116 100 74 41 18 0 0 241s 17000 123 109 94 69 38 17 0 0 241s 18000 119 105 90 65 34 16 0 0 241s 19000 115 102 87 63 33 15 0 0 241s 20000 111 98 84 61 33 15 0 0 241s 21000 105 93 80 58 30 13 0 0 241s 22000 100 90 77 56 28 12 0 0 241s 23000 96 86 73 53 26 11 0 0 241s 24000 94 84 71 51 26 11 0 0 241s 25000 90 80 68 49 25 11 0 0 241s 26000 88 78 67 49 25 11 0 0 241s 27000 84 74 64 47 23 10 0 0 241s 28000 81 71 61 46 22 9 0 0 241s 29000 76 66 57 42 21 8 0 0 241s 30000 71 61 52 38 20 8 0 0 241s 31000 69 59 50 36 19 7 0 0 241s 32000 67 57 48 34 18 7 0 0 241s 33000 66 56 47 33 18 7 0 0 241s 34000 66 56 47 33 18 7 0 0 241s 35000 64 55 46 32 18 7 0 0 241s 36000 61 52 45 31 18 7 0 0 241s 37000 58 49 44 30 17 7 0 0 241s 38000 58 49 44 30 17 7 0 0 241s 39000 57 49 44 30 17 7 0 0 241s 40000 57 49 44 30 17 7 0 0 241s 45000 52 46 42 29 17 7 0 0 241s 50000 47 42 38 25 16 6 0 0 241s 55000 43 38 34 21 13 4 0 0 241s 60000 36 31 28 18 10 3 0 0 241s 65000 32 28 25 16 9 2 0 0 241s 70000 28 25 23 14 9 2 0 0 241s 75000 23 21 19 12 7 2 0 0 241s 80000 21 19 18 11 7 2 0 0 241s 85000 20 18 17 11 7 2 0 0 241s 90000 17 16 15 10 6 2 0 0 241s 95000 17 16 15 10 6 2 0 0 241s 100000 14 13 12 8 4 1 0 0 241s 120000 10 9 8 5 2 0 0 0 241s 140000 6 6 5 3 1 0 0 0 241s 160000 6 6 5 3 1 0 0 0 241s 180000 6 6 5 3 1 0 0 0 241s 200000 5 5 4 2 1 0 0 0 241s 220000 5 5 4 2 1 0 0 0 241s 240000 3 3 2 2 1 0 0 0 241s 260000 3 3 2 2 1 0 0 0 241s 280000 3 3 2 2 1 0 0 0 241s 300000 3 3 2 2 1 0 0 0 241s 320000 3 3 2 2 1 0 0 0 241s 340000 2 2 2 2 1 0 0 0 241s 360000 1 1 1 1 0 0 0 0 241s 380000 1 1 1 1 0 0 0 0 241s 400000 0 0 0 0 0 0 0 0 241s 241s autopkgtest [20:58:04]: test run-unit-test: -----------------------] 242s run-unit-test PASS 242s autopkgtest [20:58:05]: test run-unit-test: - - - - - - - - - - results - - - - - - - - - - 242s autopkgtest [20:58:05]: @@@@@@@@@@@@@@@@@@@@ summary 242s run-unit-test PASS 247s nova [W] Using flock in prodstack6-ppc64el 247s Creating nova instance adt-plucky-ppc64el-python-pauvre-20241115-205403-juju-7f2275-prod-proposed-migration-environment-20-64cc8c42-cd9d-4deb-b2ff-32afd9d20c28 from image adt/ubuntu-plucky-ppc64el-server-20241113.img (UUID 0c5715b6-5cca-4485-b8bf-b85dfd917a5f)...