0s autopkgtest [22:23:12]: starting date and time: 2024-11-13 22:23:12+0000 0s autopkgtest [22:23:12]: git checkout: 6f3be7a8 Fix armhf LXD image generation for plucky 0s autopkgtest [22:23:12]: host juju-7f2275-prod-proposed-migration-environment-15; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work._rrggy_i/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:python3-defaults,src:python3-stdlib-extensions --apt-upgrade python-iow --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 '--env=ADT_TEST_TRIGGERS=python3-defaults/3.12.7-1 python3-stdlib-extensions/3.12.7-1' -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest-ppc64el --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-15@bos03-ppc64el-24.secgroup --name adt-plucky-ppc64el-python-iow-20241113-222312-juju-7f2275-prod-proposed-migration-environment-15-b4afbdb2-9726-4cd4-8657-582632656b1a --image adt/ubuntu-plucky-ppc64el-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-15 --net-id=net_prod-proposed-migration-ppc64el -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,keyserver.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/ 110s autopkgtest [22:25:02]: testbed dpkg architecture: ppc64el 110s autopkgtest [22:25:02]: testbed apt version: 2.9.8 110s autopkgtest [22:25:02]: @@@@@@@@@@@@@@@@@@@@ test bed setup 111s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease [73.9 kB] 111s Get:2 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse Sources [17.2 kB] 111s Get:3 http://ftpmaster.internal/ubuntu plucky-proposed/restricted Sources [7016 B] 111s Get:4 http://ftpmaster.internal/ubuntu plucky-proposed/main Sources [101 kB] 111s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/universe Sources [974 kB] 111s Get:6 http://ftpmaster.internal/ubuntu plucky-proposed/main ppc64el Packages [110 kB] 111s Get:7 http://ftpmaster.internal/ubuntu plucky-proposed/universe ppc64el Packages [684 kB] 111s Get:8 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse ppc64el Packages [20.8 kB] 112s Fetched 1986 kB in 1s (2069 kB/s) 112s Reading package lists... 114s Reading package lists... 114s Building dependency tree... 114s Reading state information... 115s Calculating upgrade... 115s The following NEW packages will be installed: 115s python3.13-gdbm 115s The following packages will be upgraded: 115s bpfcc-tools bpftrace libbpfcc libgnutls30t64 libjson-glib-1.0-0 115s libjson-glib-1.0-common libnewt0.52 libpython3-stdlib libutempter0 python3 115s python3-bpfcc python3-gdbm python3-minimal python3-newt whiptail 115s 15 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. 115s Need to get 4700 kB of archives. 115s After this operation, 215 kB of additional disk space will be used. 115s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed/main ppc64el python3-minimal ppc64el 3.12.7-1 [27.4 kB] 115s Get:2 http://ftpmaster.internal/ubuntu plucky-proposed/main ppc64el python3 ppc64el 3.12.7-1 [24.0 kB] 115s Get:3 http://ftpmaster.internal/ubuntu plucky-proposed/main ppc64el libpython3-stdlib ppc64el 3.12.7-1 [10.0 kB] 115s Get:4 http://ftpmaster.internal/ubuntu plucky/main ppc64el libgnutls30t64 ppc64el 3.8.8-2ubuntu1 [1072 kB] 115s Get:5 http://ftpmaster.internal/ubuntu plucky/main ppc64el python3-newt ppc64el 0.52.24-2ubuntu4 [21.8 kB] 115s Get:6 http://ftpmaster.internal/ubuntu plucky/main ppc64el libnewt0.52 ppc64el 0.52.24-2ubuntu4 [62.1 kB] 115s Get:7 http://ftpmaster.internal/ubuntu plucky/main ppc64el whiptail ppc64el 0.52.24-2ubuntu4 [19.5 kB] 115s Get:8 http://ftpmaster.internal/ubuntu plucky/main ppc64el python3.13-gdbm ppc64el 3.13.0-2 [31.5 kB] 115s Get:9 http://ftpmaster.internal/ubuntu plucky-proposed/main ppc64el python3-gdbm ppc64el 3.12.7-1 [8640 B] 115s Get:10 http://ftpmaster.internal/ubuntu plucky/main ppc64el libbpfcc ppc64el 0.30.0+ds-1ubuntu5 [696 kB] 115s Get:11 http://ftpmaster.internal/ubuntu plucky/main ppc64el python3-bpfcc all 0.30.0+ds-1ubuntu5 [40.4 kB] 115s Get:12 http://ftpmaster.internal/ubuntu plucky/main ppc64el bpfcc-tools all 0.30.0+ds-1ubuntu5 [697 kB] 115s Get:13 http://ftpmaster.internal/ubuntu plucky/main ppc64el bpftrace ppc64el 0.21.2-2ubuntu2 [1898 kB] 115s Get:14 http://ftpmaster.internal/ubuntu plucky/main ppc64el libjson-glib-1.0-common all 1.10.0+ds-3 [5586 B] 115s Get:15 http://ftpmaster.internal/ubuntu plucky/main ppc64el libjson-glib-1.0-0 ppc64el 1.10.0+ds-3 [76.0 kB] 115s Get:16 http://ftpmaster.internal/ubuntu plucky/main ppc64el libutempter0 ppc64el 1.2.1-4 [9850 B] 116s Fetched 4700 kB in 1s (6357 kB/s) 116s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 73767 files and directories currently installed.) 116s Preparing to unpack .../python3-minimal_3.12.7-1_ppc64el.deb ... 116s Unpacking python3-minimal (3.12.7-1) over (3.12.6-0ubuntu1) ... 116s Setting up python3-minimal (3.12.7-1) ... 116s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 73767 files and directories currently installed.) 116s Preparing to unpack .../python3_3.12.7-1_ppc64el.deb ... 117s Unpacking python3 (3.12.7-1) over (3.12.6-0ubuntu1) ... 117s Preparing to unpack .../libpython3-stdlib_3.12.7-1_ppc64el.deb ... 117s Unpacking libpython3-stdlib:ppc64el (3.12.7-1) over (3.12.6-0ubuntu1) ... 117s Preparing to unpack .../libgnutls30t64_3.8.8-2ubuntu1_ppc64el.deb ... 117s Unpacking libgnutls30t64:ppc64el (3.8.8-2ubuntu1) over (3.8.6-2ubuntu1) ... 117s Setting up libgnutls30t64:ppc64el (3.8.8-2ubuntu1) ... 117s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 73767 files and directories currently installed.) 117s Preparing to unpack .../00-python3-newt_0.52.24-2ubuntu4_ppc64el.deb ... 117s Unpacking python3-newt:ppc64el (0.52.24-2ubuntu4) over (0.52.24-2ubuntu3) ... 117s Preparing to unpack .../01-libnewt0.52_0.52.24-2ubuntu4_ppc64el.deb ... 117s Unpacking libnewt0.52:ppc64el (0.52.24-2ubuntu4) over (0.52.24-2ubuntu3) ... 117s Preparing to unpack .../02-whiptail_0.52.24-2ubuntu4_ppc64el.deb ... 117s Unpacking whiptail (0.52.24-2ubuntu4) over (0.52.24-2ubuntu3) ... 117s Selecting previously unselected package python3.13-gdbm. 117s Preparing to unpack .../03-python3.13-gdbm_3.13.0-2_ppc64el.deb ... 117s Unpacking python3.13-gdbm (3.13.0-2) ... 117s Preparing to unpack .../04-python3-gdbm_3.12.7-1_ppc64el.deb ... 117s Unpacking python3-gdbm:ppc64el (3.12.7-1) over (3.12.6-1ubuntu1) ... 117s Preparing to unpack .../05-libbpfcc_0.30.0+ds-1ubuntu5_ppc64el.deb ... 117s Unpacking libbpfcc:ppc64el (0.30.0+ds-1ubuntu5) over (0.30.0+ds-1ubuntu4) ... 117s Preparing to unpack .../06-python3-bpfcc_0.30.0+ds-1ubuntu5_all.deb ... 117s Unpacking python3-bpfcc (0.30.0+ds-1ubuntu5) over (0.30.0+ds-1ubuntu4) ... 117s Preparing to unpack .../07-bpfcc-tools_0.30.0+ds-1ubuntu5_all.deb ... 117s Unpacking bpfcc-tools (0.30.0+ds-1ubuntu5) over (0.30.0+ds-1ubuntu4) ... 117s Preparing to unpack .../08-bpftrace_0.21.2-2ubuntu2_ppc64el.deb ... 117s Unpacking bpftrace (0.21.2-2ubuntu2) over (0.21.2-2) ... 117s Preparing to unpack .../09-libjson-glib-1.0-common_1.10.0+ds-3_all.deb ... 117s Unpacking libjson-glib-1.0-common (1.10.0+ds-3) over (1.10.0+ds-2) ... 117s Preparing to unpack .../10-libjson-glib-1.0-0_1.10.0+ds-3_ppc64el.deb ... 117s Unpacking libjson-glib-1.0-0:ppc64el (1.10.0+ds-3) over (1.10.0+ds-2) ... 117s Preparing to unpack .../11-libutempter0_1.2.1-4_ppc64el.deb ... 117s Unpacking libutempter0:ppc64el (1.2.1-4) over (1.2.1-3build1) ... 117s Setting up libnewt0.52:ppc64el (0.52.24-2ubuntu4) ... 117s Setting up libutempter0:ppc64el (1.2.1-4) ... 117s Setting up whiptail (0.52.24-2ubuntu4) ... 117s Setting up libjson-glib-1.0-common (1.10.0+ds-3) ... 117s Setting up libbpfcc:ppc64el (0.30.0+ds-1ubuntu5) ... 117s Setting up python3.13-gdbm (3.13.0-2) ... 117s Setting up libpython3-stdlib:ppc64el (3.12.7-1) ... 117s Setting up bpftrace (0.21.2-2ubuntu2) ... 117s Setting up python3 (3.12.7-1) ... 118s Setting up python3-newt:ppc64el (0.52.24-2ubuntu4) ... 118s Setting up libjson-glib-1.0-0:ppc64el (1.10.0+ds-3) ... 118s Setting up python3-bpfcc (0.30.0+ds-1ubuntu5) ... 118s Setting up python3-gdbm:ppc64el (3.12.7-1) ... 118s Setting up bpfcc-tools (0.30.0+ds-1ubuntu5) ... 118s Processing triggers for man-db (2.12.1-3) ... 120s Processing triggers for libc-bin (2.40-1ubuntu3) ... 120s Reading package lists... 120s Building dependency tree... 120s Reading state information... 120s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 121s Hit:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease 121s Hit:2 http://ftpmaster.internal/ubuntu plucky InRelease 121s Hit:3 http://ftpmaster.internal/ubuntu plucky-updates InRelease 121s Hit:4 http://ftpmaster.internal/ubuntu plucky-security InRelease 122s Reading package lists... 122s Reading package lists... 122s Building dependency tree... 122s Reading state information... 123s Calculating upgrade... 123s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 123s Reading package lists... 123s Building dependency tree... 123s Reading state information... 123s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 126s autopkgtest [22:25:18]: testbed running kernel: Linux 6.11.0-8-generic #8-Ubuntu SMP Mon Sep 16 13:49:23 UTC 2024 126s autopkgtest [22:25:18]: @@@@@@@@@@@@@@@@@@@@ apt-source python-iow 128s Get:1 http://ftpmaster.internal/ubuntu plucky/universe python-iow 1.0.7-1 (dsc) [2353 B] 128s Get:2 http://ftpmaster.internal/ubuntu plucky/universe python-iow 1.0.7-1 (tar) [160 kB] 128s Get:3 http://ftpmaster.internal/ubuntu plucky/universe python-iow 1.0.7-1 (diff) [4720 B] 128s gpgv: Signature made Sat Aug 31 10:16:19 2024 UTC 128s gpgv: using RSA key 8F91B227C7D6F2B1948C8236793CF67E8F0D11DA 128s gpgv: issuer "emollier@debian.org" 128s gpgv: Can't check signature: No public key 128s dpkg-source: warning: cannot verify inline signature for ./python-iow_1.0.7-1.dsc: no acceptable signature found 128s autopkgtest [22:25:20]: testing package python-iow version 1.0.7-1 128s autopkgtest [22:25:20]: build not needed 128s autopkgtest [22:25:20]: test run-unit-test: preparing testbed 130s Reading package lists... 130s Building dependency tree... 130s Reading state information... 130s Starting pkgProblemResolver with broken count: 0 130s Starting 2 pkgProblemResolver with broken count: 0 130s Done 131s The following additional packages will be installed: 131s libaec0 libblas3 libgfortran5 libgomp1 libhdf5-103-1t64 libhdf5-hl-100t64 131s liblapack3 liblbfgsb0 liblzf1 libpython3.13-minimal libpython3.13-stdlib 131s libssw0 libsz2 python3-all python3-biom-format python3-click 131s python3-colorama python3-dateutil python3-decorator python3-h5py 131s python3-h5py-serial python3-hdmedians python3-iow python3-natsort 131s python3-numpy python3-packaging python3-pandas python3-pandas-lib 131s python3-patsy python3-scipy python3-six python3-skbio python3-statsmodels 131s python3-statsmodels-lib python3-tz python3.13 python3.13-minimal 131s Suggested packages: 131s python-biom-format-doc python-h5py-doc python-natsort-doc gcc gfortran 131s python-numpy-doc python3-dev python3-pytest python-pandas-doc 131s python-patsy-doc python-scipy-doc python-skbio-doc python-statsmodels-doc 131s python3.13-venv python3.13-doc binfmt-support 131s Recommended packages: 131s python3-matplotlib python3-bottleneck python3-numexpr python3-odf 131s python3-openpyxl python3-bs4 python3-html5lib python3-lxml python3-tables 131s g++ | c++-compiler python3-pil python3-joblib python3-cvxopt 131s The following NEW packages will be installed: 131s autopkgtest-satdep libaec0 libblas3 libgfortran5 libgomp1 libhdf5-103-1t64 131s libhdf5-hl-100t64 liblapack3 liblbfgsb0 liblzf1 libpython3.13-minimal 131s libpython3.13-stdlib libssw0 libsz2 python3-all python3-biom-format 131s python3-click python3-colorama python3-dateutil python3-decorator 131s python3-h5py python3-h5py-serial python3-hdmedians python3-iow 131s python3-natsort python3-numpy python3-packaging python3-pandas 131s python3-pandas-lib python3-patsy python3-scipy python3-six python3-skbio 131s python3-statsmodels python3-statsmodels-lib python3-tz python3.13 131s python3.13-minimal 131s 0 upgraded, 38 newly installed, 0 to remove and 0 not upgraded. 131s Need to get 52.6 MB/52.6 MB of archives. 131s After this operation, 254 MB of additional disk space will be used. 131s Get:1 /tmp/autopkgtest.2QAykH/1-autopkgtest-satdep.deb autopkgtest-satdep ppc64el 0 [720 B] 131s Get:2 http://ftpmaster.internal/ubuntu plucky/main ppc64el libpython3.13-minimal ppc64el 3.13.0-2 [881 kB] 131s Get:3 http://ftpmaster.internal/ubuntu plucky/main ppc64el python3.13-minimal ppc64el 3.13.0-2 [2302 kB] 131s Get:4 http://ftpmaster.internal/ubuntu plucky/universe ppc64el libaec0 ppc64el 1.1.3-1 [30.1 kB] 131s Get:5 http://ftpmaster.internal/ubuntu plucky/main ppc64el libblas3 ppc64el 3.12.0-3build2 [222 kB] 131s Get:6 http://ftpmaster.internal/ubuntu plucky/main ppc64el libgfortran5 ppc64el 14.2.0-8ubuntu1 [571 kB] 131s Get:7 http://ftpmaster.internal/ubuntu plucky/main ppc64el libgomp1 ppc64el 14.2.0-8ubuntu1 [161 kB] 131s Get:8 http://ftpmaster.internal/ubuntu plucky/universe ppc64el libsz2 ppc64el 1.1.3-1 [5566 B] 131s Get:9 http://ftpmaster.internal/ubuntu plucky/universe ppc64el libhdf5-103-1t64 ppc64el 1.10.10+repack-4ubuntu3 [1387 kB] 131s Get:10 http://ftpmaster.internal/ubuntu plucky/universe ppc64el libhdf5-hl-100t64 ppc64el 1.10.10+repack-4ubuntu3 [71.2 kB] 131s Get:11 http://ftpmaster.internal/ubuntu plucky/main ppc64el liblapack3 ppc64el 3.12.0-3build2 [2806 kB] 131s Get:12 http://ftpmaster.internal/ubuntu plucky/universe ppc64el liblbfgsb0 ppc64el 3.0+dfsg.4-1build1 [33.0 kB] 131s Get:13 http://ftpmaster.internal/ubuntu plucky/universe ppc64el liblzf1 ppc64el 3.6-4 [7920 B] 131s Get:14 http://ftpmaster.internal/ubuntu plucky/main ppc64el libpython3.13-stdlib ppc64el 3.13.0-2 [2148 kB] 132s Get:15 http://ftpmaster.internal/ubuntu plucky/universe ppc64el libssw0 ppc64el 1.1-15 [24.2 kB] 132s Get:16 http://ftpmaster.internal/ubuntu plucky/main ppc64el python3.13 ppc64el 3.13.0-2 [719 kB] 132s Get:17 http://ftpmaster.internal/ubuntu plucky-proposed/main ppc64el python3-all ppc64el 3.12.7-1 [888 B] 132s Get:18 http://ftpmaster.internal/ubuntu plucky/main ppc64el python3-numpy ppc64el 1:1.26.4+ds-11build1 [4434 kB] 132s Get:19 http://ftpmaster.internal/ubuntu plucky/universe ppc64el python3-h5py-serial ppc64el 3.11.0-5ubuntu1 [1159 kB] 132s Get:20 http://ftpmaster.internal/ubuntu plucky/universe ppc64el python3-h5py all 3.11.0-5ubuntu1 [7974 B] 132s Get:21 http://ftpmaster.internal/ubuntu plucky/main ppc64el python3-colorama all 0.4.6-4 [32.1 kB] 132s Get:22 http://ftpmaster.internal/ubuntu plucky/main ppc64el python3-click all 8.1.7-2 [79.5 kB] 132s Get:23 http://ftpmaster.internal/ubuntu plucky/main ppc64el python3-six all 1.16.0-7 [13.1 kB] 132s Get:24 http://ftpmaster.internal/ubuntu plucky/main ppc64el python3-dateutil all 2.9.0-2 [80.3 kB] 132s Get:25 http://ftpmaster.internal/ubuntu plucky/main ppc64el python3-tz all 2024.1-2 [31.4 kB] 132s Get:26 http://ftpmaster.internal/ubuntu plucky/universe ppc64el python3-pandas-lib ppc64el 2.2.3+dfsg-5 [4761 kB] 132s Get:27 http://ftpmaster.internal/ubuntu plucky/universe ppc64el python3-pandas all 2.2.3+dfsg-5 [3112 kB] 132s Get:28 http://ftpmaster.internal/ubuntu plucky/main ppc64el python3-decorator all 5.1.1-5 [10.1 kB] 132s Get:29 http://ftpmaster.internal/ubuntu plucky/universe ppc64el python3-scipy ppc64el 1.13.1-5 [18.3 MB] 132s Get:30 http://ftpmaster.internal/ubuntu plucky/universe ppc64el python3-biom-format ppc64el 2.1.16-1 [152 kB] 132s Get:31 http://ftpmaster.internal/ubuntu plucky/universe ppc64el python3-hdmedians ppc64el 0.14.2-5.1build1 [147 kB] 132s Get:32 http://ftpmaster.internal/ubuntu plucky/universe ppc64el python3-natsort all 8.0.2-2 [33.8 kB] 132s Get:33 http://ftpmaster.internal/ubuntu plucky/main ppc64el python3-packaging all 24.1-1 [41.4 kB] 132s Get:34 http://ftpmaster.internal/ubuntu plucky/universe ppc64el python3-patsy all 0.5.6-1 [181 kB] 132s Get:35 http://ftpmaster.internal/ubuntu plucky/universe ppc64el python3-statsmodels-lib ppc64el 0.14.4+dfsg-1 [1727 kB] 133s Get:36 http://ftpmaster.internal/ubuntu plucky/universe ppc64el python3-statsmodels all 0.14.4+dfsg-1 [5010 kB] 133s Get:37 http://ftpmaster.internal/ubuntu plucky/universe ppc64el python3-skbio ppc64el 0.6.2-3 [1438 kB] 133s Get:38 http://ftpmaster.internal/ubuntu plucky/universe ppc64el python3-iow ppc64el 1.0.7-1 [454 kB] 133s Fetched 52.6 MB in 2s (25.1 MB/s) 133s Selecting previously unselected package libpython3.13-minimal:ppc64el. 133s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 73775 files and directories currently installed.) 133s Preparing to unpack .../00-libpython3.13-minimal_3.13.0-2_ppc64el.deb ... 133s Unpacking libpython3.13-minimal:ppc64el (3.13.0-2) ... 133s Selecting previously unselected package python3.13-minimal. 133s Preparing to unpack .../01-python3.13-minimal_3.13.0-2_ppc64el.deb ... 133s Unpacking python3.13-minimal (3.13.0-2) ... 133s Selecting previously unselected package libaec0:ppc64el. 133s Preparing to unpack .../02-libaec0_1.1.3-1_ppc64el.deb ... 133s Unpacking libaec0:ppc64el (1.1.3-1) ... 133s Selecting previously unselected package libblas3:ppc64el. 133s Preparing to unpack .../03-libblas3_3.12.0-3build2_ppc64el.deb ... 133s Unpacking libblas3:ppc64el (3.12.0-3build2) ... 133s Selecting previously unselected package libgfortran5:ppc64el. 133s Preparing to unpack .../04-libgfortran5_14.2.0-8ubuntu1_ppc64el.deb ... 133s Unpacking libgfortran5:ppc64el (14.2.0-8ubuntu1) ... 133s Selecting previously unselected package libgomp1:ppc64el. 133s Preparing to unpack .../05-libgomp1_14.2.0-8ubuntu1_ppc64el.deb ... 133s Unpacking libgomp1:ppc64el (14.2.0-8ubuntu1) ... 133s Selecting previously unselected package libsz2:ppc64el. 133s Preparing to unpack .../06-libsz2_1.1.3-1_ppc64el.deb ... 133s Unpacking libsz2:ppc64el (1.1.3-1) ... 133s Selecting previously unselected package libhdf5-103-1t64:ppc64el. 133s Preparing to unpack .../07-libhdf5-103-1t64_1.10.10+repack-4ubuntu3_ppc64el.deb ... 133s Unpacking libhdf5-103-1t64:ppc64el (1.10.10+repack-4ubuntu3) ... 133s Selecting previously unselected package libhdf5-hl-100t64:ppc64el. 133s Preparing to unpack .../08-libhdf5-hl-100t64_1.10.10+repack-4ubuntu3_ppc64el.deb ... 133s Unpacking libhdf5-hl-100t64:ppc64el (1.10.10+repack-4ubuntu3) ... 134s Selecting previously unselected package liblapack3:ppc64el. 134s Preparing to unpack .../09-liblapack3_3.12.0-3build2_ppc64el.deb ... 134s Unpacking liblapack3:ppc64el (3.12.0-3build2) ... 134s Selecting previously unselected package liblbfgsb0:ppc64el. 134s Preparing to unpack .../10-liblbfgsb0_3.0+dfsg.4-1build1_ppc64el.deb ... 134s Unpacking liblbfgsb0:ppc64el (3.0+dfsg.4-1build1) ... 134s Selecting previously unselected package liblzf1:ppc64el. 134s Preparing to unpack .../11-liblzf1_3.6-4_ppc64el.deb ... 134s Unpacking liblzf1:ppc64el (3.6-4) ... 134s Selecting previously unselected package libpython3.13-stdlib:ppc64el. 134s Preparing to unpack .../12-libpython3.13-stdlib_3.13.0-2_ppc64el.deb ... 134s Unpacking libpython3.13-stdlib:ppc64el (3.13.0-2) ... 134s Selecting previously unselected package libssw0:ppc64el. 134s Preparing to unpack .../13-libssw0_1.1-15_ppc64el.deb ... 134s Unpacking libssw0:ppc64el (1.1-15) ... 134s Selecting previously unselected package python3.13. 134s Preparing to unpack .../14-python3.13_3.13.0-2_ppc64el.deb ... 134s Unpacking python3.13 (3.13.0-2) ... 134s Selecting previously unselected package python3-all. 134s Preparing to unpack .../15-python3-all_3.12.7-1_ppc64el.deb ... 134s Unpacking python3-all (3.12.7-1) ... 134s Selecting previously unselected package python3-numpy. 134s Preparing to unpack .../16-python3-numpy_1%3a1.26.4+ds-11build1_ppc64el.deb ... 134s Unpacking python3-numpy (1:1.26.4+ds-11build1) ... 134s Selecting previously unselected package python3-h5py-serial. 134s Preparing to unpack .../17-python3-h5py-serial_3.11.0-5ubuntu1_ppc64el.deb ... 134s Unpacking python3-h5py-serial (3.11.0-5ubuntu1) ... 134s Selecting previously unselected package python3-h5py. 134s Preparing to unpack .../18-python3-h5py_3.11.0-5ubuntu1_all.deb ... 134s Unpacking python3-h5py (3.11.0-5ubuntu1) ... 134s Selecting previously unselected package python3-colorama. 134s Preparing to unpack .../19-python3-colorama_0.4.6-4_all.deb ... 134s Unpacking python3-colorama (0.4.6-4) ... 134s Selecting previously unselected package python3-click. 134s Preparing to unpack .../20-python3-click_8.1.7-2_all.deb ... 134s Unpacking python3-click (8.1.7-2) ... 134s Selecting previously unselected package python3-six. 134s Preparing to unpack .../21-python3-six_1.16.0-7_all.deb ... 134s Unpacking python3-six (1.16.0-7) ... 134s Selecting previously unselected package python3-dateutil. 134s Preparing to unpack .../22-python3-dateutil_2.9.0-2_all.deb ... 134s Unpacking python3-dateutil (2.9.0-2) ... 134s Selecting previously unselected package python3-tz. 134s Preparing to unpack .../23-python3-tz_2024.1-2_all.deb ... 134s Unpacking python3-tz (2024.1-2) ... 134s Selecting previously unselected package python3-pandas-lib:ppc64el. 134s Preparing to unpack .../24-python3-pandas-lib_2.2.3+dfsg-5_ppc64el.deb ... 134s Unpacking python3-pandas-lib:ppc64el (2.2.3+dfsg-5) ... 134s Selecting previously unselected package python3-pandas. 134s Preparing to unpack .../25-python3-pandas_2.2.3+dfsg-5_all.deb ... 134s Unpacking python3-pandas (2.2.3+dfsg-5) ... 135s Selecting previously unselected package python3-decorator. 135s Preparing to unpack .../26-python3-decorator_5.1.1-5_all.deb ... 135s Unpacking python3-decorator (5.1.1-5) ... 135s Selecting previously unselected package python3-scipy. 135s Preparing to unpack .../27-python3-scipy_1.13.1-5_ppc64el.deb ... 135s Unpacking python3-scipy (1.13.1-5) ... 135s Selecting previously unselected package python3-biom-format. 135s Preparing to unpack .../28-python3-biom-format_2.1.16-1_ppc64el.deb ... 135s Unpacking python3-biom-format (2.1.16-1) ... 135s Selecting previously unselected package python3-hdmedians. 135s Preparing to unpack .../29-python3-hdmedians_0.14.2-5.1build1_ppc64el.deb ... 135s Unpacking python3-hdmedians (0.14.2-5.1build1) ... 135s Selecting previously unselected package python3-natsort. 135s Preparing to unpack .../30-python3-natsort_8.0.2-2_all.deb ... 135s Unpacking python3-natsort (8.0.2-2) ... 135s Selecting previously unselected package python3-packaging. 135s Preparing to unpack .../31-python3-packaging_24.1-1_all.deb ... 135s Unpacking python3-packaging (24.1-1) ... 135s Selecting previously unselected package python3-patsy. 135s Preparing to unpack .../32-python3-patsy_0.5.6-1_all.deb ... 135s Unpacking python3-patsy (0.5.6-1) ... 135s Selecting previously unselected package python3-statsmodels-lib:ppc64el. 135s Preparing to unpack .../33-python3-statsmodels-lib_0.14.4+dfsg-1_ppc64el.deb ... 135s Unpacking python3-statsmodels-lib:ppc64el (0.14.4+dfsg-1) ... 135s Selecting previously unselected package python3-statsmodels. 135s Preparing to unpack .../34-python3-statsmodels_0.14.4+dfsg-1_all.deb ... 135s Unpacking python3-statsmodels (0.14.4+dfsg-1) ... 136s Selecting previously unselected package python3-skbio. 136s Preparing to unpack .../35-python3-skbio_0.6.2-3_ppc64el.deb ... 136s Unpacking python3-skbio (0.6.2-3) ... 136s Selecting previously unselected package python3-iow. 136s Preparing to unpack .../36-python3-iow_1.0.7-1_ppc64el.deb ... 136s Unpacking python3-iow (1.0.7-1) ... 136s Selecting previously unselected package autopkgtest-satdep. 136s Preparing to unpack .../37-1-autopkgtest-satdep.deb ... 136s Unpacking autopkgtest-satdep (0) ... 136s Setting up python3-colorama (0.4.6-4) ... 136s Setting up libgomp1:ppc64el (14.2.0-8ubuntu1) ... 136s Setting up python3-click (8.1.7-2) ... 137s Setting up libaec0:ppc64el (1.1.3-1) ... 137s Setting up python3-tz (2024.1-2) ... 137s Setting up python3-natsort (8.0.2-2) ... 137s Setting up python3-six (1.16.0-7) ... 137s Setting up libpython3.13-minimal:ppc64el (3.13.0-2) ... 137s Setting up python3-decorator (5.1.1-5) ... 138s Setting up libblas3:ppc64el (3.12.0-3build2) ... 138s update-alternatives: using /usr/lib/powerpc64le-linux-gnu/blas/libblas.so.3 to provide /usr/lib/powerpc64le-linux-gnu/libblas.so.3 (libblas.so.3-powerpc64le-linux-gnu) in auto mode 138s Setting up python3-packaging (24.1-1) ... 138s Setting up liblzf1:ppc64el (3.6-4) ... 138s Setting up libgfortran5:ppc64el (14.2.0-8ubuntu1) ... 138s Setting up python3.13-minimal (3.13.0-2) ... 139s Setting up python3-dateutil (2.9.0-2) ... 139s Setting up libpython3.13-stdlib:ppc64el (3.13.0-2) ... 139s Setting up libssw0:ppc64el (1.1-15) ... 139s Setting up libsz2:ppc64el (1.1.3-1) ... 139s Setting up liblapack3:ppc64el (3.12.0-3build2) ... 139s update-alternatives: using /usr/lib/powerpc64le-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/powerpc64le-linux-gnu/liblapack.so.3 (liblapack.so.3-powerpc64le-linux-gnu) in auto mode 139s Setting up python3.13 (3.13.0-2) ... 141s Setting up python3-all (3.12.7-1) ... 141s Setting up python3-numpy (1:1.26.4+ds-11build1) ... 145s Setting up python3-hdmedians (0.14.2-5.1build1) ... 145s Setting up libhdf5-103-1t64:ppc64el (1.10.10+repack-4ubuntu3) ... 145s Setting up python3-statsmodels-lib:ppc64el (0.14.4+dfsg-1) ... 145s Setting up liblbfgsb0:ppc64el (3.0+dfsg.4-1build1) ... 145s Setting up libhdf5-hl-100t64:ppc64el (1.10.10+repack-4ubuntu3) ... 145s Setting up python3-scipy (1.13.1-5) ... 153s Setting up python3-pandas-lib:ppc64el (2.2.3+dfsg-5) ... 153s Setting up python3-h5py-serial (3.11.0-5ubuntu1) ... 154s Setting up python3-patsy (0.5.6-1) ... 154s Setting up python3-pandas (2.2.3+dfsg-5) ... 166s Setting up python3-h5py (3.11.0-5ubuntu1) ... 167s Setting up python3-statsmodels (0.14.4+dfsg-1) ... 173s Setting up python3-biom-format (2.1.16-1) ... 174s Setting up python3-skbio (0.6.2-3) ... 175s Setting up python3-iow (1.0.7-1) ... 175s Setting up autopkgtest-satdep (0) ... 175s Processing triggers for systemd (256.5-2ubuntu4) ... 175s Processing triggers for man-db (2.12.1-3) ... 176s Processing triggers for libc-bin (2.40-1ubuntu3) ... 179s (Reading database ... 81425 files and directories currently installed.) 179s Removing autopkgtest-satdep (0) ... 179s autopkgtest [22:26:11]: test run-unit-test: [----------------------- 180s EEEE 180s ====================================================================== 180s ERROR: tests.test_bp (unittest.loader._FailedTest.tests.test_bp) 180s ---------------------------------------------------------------------- 180s ImportError: Failed to import test module: tests.test_bp 180s Traceback (most recent call last): 180s File "/usr/lib/python3/dist-packages/numpy/core/__init__.py", line 24, in 180s from . import multiarray 180s File "/usr/lib/python3/dist-packages/numpy/core/multiarray.py", line 10, in 180s from . import overrides 180s File "/usr/lib/python3/dist-packages/numpy/core/overrides.py", line 8, in 180s from numpy.core._multiarray_umath import ( 180s add_docstring, _get_implementing_args, _ArrayFunctionDispatcher) 180s ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 180s 180s During handling of the above exception, another exception occurred: 180s 180s Traceback (most recent call last): 180s File "/usr/lib/python3/dist-packages/numpy/__init__.py", line 130, in 180s from numpy.__config__ import show as show_config 180s File "/usr/lib/python3/dist-packages/numpy/__config__.py", line 4, in 180s from numpy.core._multiarray_umath import ( 180s ...<3 lines>... 180s ) 180s File "/usr/lib/python3/dist-packages/numpy/core/__init__.py", line 50, in 180s raise ImportError(msg) 180s ImportError: 180s 180s IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 180s 180s Importing the numpy C-extensions failed. This error can happen for 180s many reasons, often due to issues with your setup or how NumPy was 180s installed. 180s 180s We have compiled some common reasons and troubleshooting tips at: 180s 180s https://numpy.org/devdocs/user/troubleshooting-importerror.html 180s 180s Please note and check the following: 180s 180s * The Python version is: Python3.13 from "/usr/bin/python3.13" 180s * The NumPy version is: "1.26.4" 180s 180s and make sure that they are the versions you expect. 180s Please carefully study the documentation linked above for further help. 180s 180s Original error was: No module named 'numpy.core._multiarray_umath' 180s 180s 180s The above exception was the direct cause of the following exception: 180s 180s Traceback (most recent call last): 180s File "/usr/lib/python3.13/unittest/loader.py", line 396, in _find_test_path 180s module = self._get_module_from_name(name) 180s File "/usr/lib/python3.13/unittest/loader.py", line 339, in _get_module_from_name 180s __import__(name) 180s ~~~~~~~~~~^^^^^^ 180s File "/tmp/autopkgtest.2QAykH/autopkgtest_tmp/tests/tests/test_bp.py", line 14, in 180s import numpy as np 180s File "/usr/lib/python3/dist-packages/numpy/__init__.py", line 135, in 180s raise ImportError(msg) from e 180s ImportError: Error importing numpy: you should not try to import numpy from 180s its source directory; please exit the numpy source tree, and relaunch 180s your python interpreter from there. 180s 180s 180s ====================================================================== 180s ERROR: tests.test_conv (unittest.loader._FailedTest.tests.test_conv) 180s ---------------------------------------------------------------------- 180s ImportError: Failed to import test module: tests.test_conv 180s Traceback (most recent call last): 180s File "/usr/lib/python3/dist-packages/h5py/__init__.py", line 24, in 180s from . import _debian_h5py_serial as _h5py 180s File "/usr/lib/python3/dist-packages/h5py/_debian_h5py_serial/__init__.py", line 25, in 180s from . import _errors 180s ImportError: cannot import name '_errors' from partially initialized module 'h5py._debian_h5py_serial' (most likely due to a circular import) (/usr/lib/python3/dist-packages/h5py/_debian_h5py_serial/__init__.py) 180s 180s During handling of the above exception, another exception occurred: 180s 180s Traceback (most recent call last): 180s File "/usr/lib/python3.13/unittest/loader.py", line 396, in _find_test_path 180s module = self._get_module_from_name(name) 180s File "/usr/lib/python3.13/unittest/loader.py", line 339, in _get_module_from_name 180s __import__(name) 180s ~~~~~~~~~~^^^^^^ 180s File "/tmp/autopkgtest.2QAykH/autopkgtest_tmp/tests/tests/test_conv.py", line 4, in 180s import skbio 180s File "/usr/lib/python3/dist-packages/skbio/__init__.py", line 12, in 180s import skbio.io # noqa 180s ^^^^^^^^^^^^^^^ 180s File "/usr/lib/python3/dist-packages/skbio/io/__init__.py", line 251, in 180s from .registry import write, read, sniff, create_format, io_registry 180s File "/usr/lib/python3/dist-packages/skbio/io/registry.py", line 181, in 180s from .util import _resolve_file, open_file, open_files, _d as _open_kwargs 180s File "/usr/lib/python3/dist-packages/skbio/io/util.py", line 32, in 180s from skbio.io._iosources import get_io_sources, get_compression_handler 180s File "/usr/lib/python3/dist-packages/skbio/io/_iosources.py", line 18, in 180s from ._fileobject import ( 180s ...<3 lines>... 180s ) 180s File "/usr/lib/python3/dist-packages/skbio/io/_fileobject.py", line 10, in 180s import h5py 180s File "/usr/lib/python3/dist-packages/h5py/__init__.py", line 26, in 180s from . import _debian_h5py_mpi as _h5py 180s ImportError: cannot import name '_debian_h5py_mpi' from partially initialized module 'h5py' (most likely due to a circular import) (/usr/lib/python3/dist-packages/h5py/__init__.py) 180s 180s 180s ====================================================================== 180s ERROR: tests.test_insert (unittest.loader._FailedTest.tests.test_insert) 180s ---------------------------------------------------------------------- 180s ImportError: Failed to import test module: tests.test_insert 180s Traceback (most recent call last): 180s File "/usr/lib/python3.13/unittest/loader.py", line 396, in _find_test_path 180s module = self._get_module_from_name(name) 180s File "/usr/lib/python3.13/unittest/loader.py", line 339, in _get_module_from_name 180s __import__(name) 180s ~~~~~~~~~~^^^^^^ 180s File "/tmp/autopkgtest.2QAykH/autopkgtest_tmp/tests/tests/test_insert.py", line 3, in 180s from bp import parse_jplace, insert_fully_resolved 180s File "/usr/lib/python3/dist-packages/bp/__init__.py", line 8, in 180s from ._bp import BP 180s ModuleNotFoundError: No module named 'bp._bp' 180s 180s 180s ====================================================================== 180s ERROR: tests.test_io (unittest.loader._FailedTest.tests.test_io) 180s ---------------------------------------------------------------------- 180s ImportError: Failed to import test module: tests.test_io 180s Traceback (most recent call last): 180s File "/usr/lib/python3.13/unittest/loader.py", line 396, in _find_test_path 180s module = self._get_module_from_name(name) 180s File "/usr/lib/python3.13/unittest/loader.py", line 339, in _get_module_from_name 180s __import__(name) 180s ~~~~~~~~~~^^^^^^ 180s File "/tmp/autopkgtest.2QAykH/autopkgtest_tmp/tests/tests/test_io.py", line 2, in 180s from bp import parse_newick, to_skbio_treenode, write_newick, parse_jplace 180s File "/usr/lib/python3/dist-packages/bp/__init__.py", line 8, in 180s from ._bp import BP 180s ModuleNotFoundError: No module named 'bp._bp' 180s 180s 180s ---------------------------------------------------------------------- 180s Ran 4 tests in 0.000s 180s 180s FAILED (errors=4) 182s .........................................../usr/lib/python3/dist-packages/skbio/tree/_tree.py:3287: RepresentationWarning: `TreeNode.tip_tip_distances`: Node with name 'e' does not have an associated length, so a length of 0.0 will be used. 182s warn( 182s /usr/lib/python3/dist-packages/skbio/tree/_tree.py:3287: RepresentationWarning: `TreeNode.tip_tip_distances`: Node with name 'f' does not have an associated length, so a length of 0.0 will be used. 182s warn( 182s /usr/lib/python3/dist-packages/skbio/tree/_tree.py:3287: RepresentationWarning: `TreeNode.tip_tip_distances`: Node with name 'g' does not have an associated length, so a length of 0.0 will be used. 182s warn( 182s /usr/lib/python3/dist-packages/skbio/tree/_tree.py:3287: RepresentationWarning: `TreeNode.tip_tip_distances`: Node with name None does not have an associated length, so a length of 0.0 will be used. 182s warn( 182s /usr/lib/python3/dist-packages/skbio/tree/_tree.py:3287: RepresentationWarning: `TreeNode.tip_tip_distances`: Node with name 'l' does not have an associated length, so a length of 0.0 will be used. 182s warn( 182s /usr/lib/python3/dist-packages/skbio/tree/_tree.py:3287: RepresentationWarning: `TreeNode.tip_tip_distances`: Node with name 'a' does not have an associated length, so a length of 0.0 will be used. 182s warn( 182s /usr/lib/python3/dist-packages/skbio/tree/_tree.py:3287: RepresentationWarning: `TreeNode.tip_tip_distances`: Node with name 'b' does not have an associated length, so a length of 0.0 will be used. 182s warn( 182s /usr/lib/python3/dist-packages/skbio/tree/_tree.py:3287: RepresentationWarning: `TreeNode.tip_tip_distances`: Node with name 'd' does not have an associated length, so a length of 0.0 will be used. 182s warn( 182s /usr/lib/python3/dist-packages/skbio/tree/_tree.py:3287: RepresentationWarning: `TreeNode.tip_tip_distances`: Node with name 'c' does not have an associated length, so a length of 0.0 will be used. 182s warn( 182s ... 182s ---------------------------------------------------------------------- 182s Ran 46 tests in 0.317s 182s 182s OK 182s autopkgtest [22:26:14]: test run-unit-test: -----------------------] 183s autopkgtest [22:26:15]: test run-unit-test: - - - - - - - - - - results - - - - - - - - - - 183s run-unit-test PASS 183s autopkgtest [22:26:15]: @@@@@@@@@@@@@@@@@@@@ summary 183s run-unit-test PASS 194s nova [W] Using flock in prodstack6-ppc64el 194s Creating nova instance adt-plucky-ppc64el-python-iow-20241113-222312-juju-7f2275-prod-proposed-migration-environment-15-b4afbdb2-9726-4cd4-8657-582632656b1a from image adt/ubuntu-plucky-ppc64el-server-20241113.img (UUID 0c5715b6-5cca-4485-b8bf-b85dfd917a5f)...