0s autopkgtest [01:40:36]: starting date and time: 2025-01-04 01:40:36+0000 0s autopkgtest [01:40:36]: git checkout: 325255d2 Merge branch 'pin-any-arch' into 'ubuntu/production' 0s autopkgtest [01:40:36]: host juju-7f2275-prod-proposed-migration-environment-2; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.jda7iqcf/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:python3-defaults --apt-upgrade python-gffutils --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 '--env=ADT_TEST_TRIGGERS=python3-defaults/3.13.1-1~exp2' -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest-ppc64el --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-2@bos03-ppc64el-15.secgroup --name adt-plucky-ppc64el-python-gffutils-20250104-014035-juju-7f2275-prod-proposed-migration-environment-2-f1a69571-1a7c-4e0e-8490-a349c9564db0 --image adt/ubuntu-plucky-ppc64el-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-2 --net-id=net_prod-proposed-migration-ppc64el -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,keyserver.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com,radosgw.ps5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/ 95s autopkgtest [01:42:11]: testbed dpkg architecture: ppc64el 95s autopkgtest [01:42:11]: testbed apt version: 2.9.18 96s autopkgtest [01:42:12]: @@@@@@@@@@@@@@@@@@@@ test bed setup 96s autopkgtest [01:42:12]: testbed release detected to be: None 97s autopkgtest [01:42:13]: updating testbed package index (apt update) 97s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease [73.9 kB] 97s Hit:2 http://ftpmaster.internal/ubuntu plucky InRelease 97s Hit:3 http://ftpmaster.internal/ubuntu plucky-updates InRelease 97s Hit:4 http://ftpmaster.internal/ubuntu plucky-security InRelease 98s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/main Sources [78.5 kB] 98s Get:6 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse Sources [12.3 kB] 98s Get:7 http://ftpmaster.internal/ubuntu plucky-proposed/restricted Sources [9708 B] 98s Get:8 http://ftpmaster.internal/ubuntu plucky-proposed/universe Sources [796 kB] 98s Get:9 http://ftpmaster.internal/ubuntu plucky-proposed/main ppc64el Packages [90.9 kB] 98s Get:10 http://ftpmaster.internal/ubuntu plucky-proposed/restricted ppc64el Packages [756 B] 98s Get:11 http://ftpmaster.internal/ubuntu plucky-proposed/universe ppc64el Packages [688 kB] 98s Get:12 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse ppc64el Packages [4084 B] 98s Fetched 1755 kB in 1s (1765 kB/s) 99s Reading package lists... 100s Reading package lists... 100s Building dependency tree... 100s Reading state information... 100s Calculating upgrade... 100s The following packages will be upgraded: 100s binutils binutils-common binutils-powerpc64le-linux-gnu libbinutils 100s libctf-nobfd0 libctf0 libsframe1 100s 7 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 100s Need to get 3752 kB of archives. 100s After this operation, 0 B of additional disk space will be used. 100s Get:1 http://ftpmaster.internal/ubuntu plucky/main ppc64el libctf0 ppc64el 2.43.50.20241230-1ubuntu1 [114 kB] 101s Get:2 http://ftpmaster.internal/ubuntu plucky/main ppc64el libctf-nobfd0 ppc64el 2.43.50.20241230-1ubuntu1 [117 kB] 101s Get:3 http://ftpmaster.internal/ubuntu plucky/main ppc64el binutils-powerpc64le-linux-gnu ppc64el 2.43.50.20241230-1ubuntu1 [2569 kB] 101s Get:4 http://ftpmaster.internal/ubuntu plucky/main ppc64el libbinutils ppc64el 2.43.50.20241230-1ubuntu1 [711 kB] 101s Get:5 http://ftpmaster.internal/ubuntu plucky/main ppc64el binutils ppc64el 2.43.50.20241230-1ubuntu1 [3096 B] 101s Get:6 http://ftpmaster.internal/ubuntu plucky/main ppc64el binutils-common ppc64el 2.43.50.20241230-1ubuntu1 [222 kB] 101s Get:7 http://ftpmaster.internal/ubuntu plucky/main ppc64el libsframe1 ppc64el 2.43.50.20241230-1ubuntu1 [15.9 kB] 101s Fetched 3752 kB in 1s (5455 kB/s) 102s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74025 files and directories currently installed.) 102s Preparing to unpack .../0-libctf0_2.43.50.20241230-1ubuntu1_ppc64el.deb ... 102s Unpacking libctf0:ppc64el (2.43.50.20241230-1ubuntu1) over (2.43.50.20241221-1ubuntu1) ... 102s Preparing to unpack .../1-libctf-nobfd0_2.43.50.20241230-1ubuntu1_ppc64el.deb ... 102s Unpacking libctf-nobfd0:ppc64el (2.43.50.20241230-1ubuntu1) over (2.43.50.20241221-1ubuntu1) ... 102s Preparing to unpack .../2-binutils-powerpc64le-linux-gnu_2.43.50.20241230-1ubuntu1_ppc64el.deb ... 102s Unpacking binutils-powerpc64le-linux-gnu (2.43.50.20241230-1ubuntu1) over (2.43.50.20241221-1ubuntu1) ... 102s Preparing to unpack .../3-libbinutils_2.43.50.20241230-1ubuntu1_ppc64el.deb ... 102s Unpacking libbinutils:ppc64el (2.43.50.20241230-1ubuntu1) over (2.43.50.20241221-1ubuntu1) ... 102s Preparing to unpack .../4-binutils_2.43.50.20241230-1ubuntu1_ppc64el.deb ... 102s Unpacking binutils (2.43.50.20241230-1ubuntu1) over (2.43.50.20241221-1ubuntu1) ... 102s Preparing to unpack .../5-binutils-common_2.43.50.20241230-1ubuntu1_ppc64el.deb ... 102s Unpacking binutils-common:ppc64el (2.43.50.20241230-1ubuntu1) over (2.43.50.20241221-1ubuntu1) ... 102s Preparing to unpack .../6-libsframe1_2.43.50.20241230-1ubuntu1_ppc64el.deb ... 102s Unpacking libsframe1:ppc64el (2.43.50.20241230-1ubuntu1) over (2.43.50.20241221-1ubuntu1) ... 102s Setting up binutils-common:ppc64el (2.43.50.20241230-1ubuntu1) ... 102s Setting up libctf-nobfd0:ppc64el (2.43.50.20241230-1ubuntu1) ... 102s Setting up libsframe1:ppc64el (2.43.50.20241230-1ubuntu1) ... 102s Setting up libbinutils:ppc64el (2.43.50.20241230-1ubuntu1) ... 102s Setting up libctf0:ppc64el (2.43.50.20241230-1ubuntu1) ... 102s Setting up binutils-powerpc64le-linux-gnu (2.43.50.20241230-1ubuntu1) ... 102s Setting up binutils (2.43.50.20241230-1ubuntu1) ... 102s Processing triggers for libc-bin (2.40-4ubuntu1) ... 102s Processing triggers for man-db (2.13.0-1) ... 103s Reading package lists... 103s Building dependency tree... 103s Reading state information... 104s 0 upgraded, 0 newly installed, 0 to remove and 3 not upgraded. 104s autopkgtest [01:42:20]: upgrading testbed (apt dist-upgrade and autopurge) 104s Reading package lists... 104s Building dependency tree... 104s Reading state information... 105s Calculating upgrade...Starting pkgProblemResolver with broken count: 0 105s Starting 2 pkgProblemResolver with broken count: 0 105s Done 105s Entering ResolveByKeep 106s 106s The following packages were automatically installed and are no longer required: 106s python3.12 python3.12-minimal 106s Use 'sudo apt autoremove' to remove them. 106s The following NEW packages will be installed: 106s libpython3.13-minimal libpython3.13-stdlib python3.13 python3.13-minimal 106s The following packages will be upgraded: 106s libpython3-stdlib python3 python3-minimal 106s 3 upgraded, 4 newly installed, 0 to remove and 0 not upgraded. 106s Need to get 6300 kB of archives. 106s After this operation, 26.2 MB of additional disk space will be used. 106s Get:1 http://ftpmaster.internal/ubuntu plucky/main ppc64el libpython3.13-minimal ppc64el 3.13.1-2 [883 kB] 107s Get:2 http://ftpmaster.internal/ubuntu plucky/main ppc64el python3.13-minimal ppc64el 3.13.1-2 [2496 kB] 107s Get:3 http://ftpmaster.internal/ubuntu plucky-proposed/main ppc64el python3-minimal ppc64el 3.13.1-1~exp2 [27.6 kB] 107s Get:4 http://ftpmaster.internal/ubuntu plucky-proposed/main ppc64el python3 ppc64el 3.13.1-1~exp2 [24.0 kB] 107s Get:5 http://ftpmaster.internal/ubuntu plucky/main ppc64el libpython3.13-stdlib ppc64el 3.13.1-2 [2131 kB] 107s Get:6 http://ftpmaster.internal/ubuntu plucky/main ppc64el python3.13 ppc64el 3.13.1-2 [729 kB] 107s Get:7 http://ftpmaster.internal/ubuntu plucky-proposed/main ppc64el libpython3-stdlib ppc64el 3.13.1-1~exp2 [10.2 kB] 107s Fetched 6300 kB in 1s (5572 kB/s) 108s Selecting previously unselected package libpython3.13-minimal:ppc64el. 108s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74025 files and directories currently installed.) 108s Preparing to unpack .../libpython3.13-minimal_3.13.1-2_ppc64el.deb ... 108s Unpacking libpython3.13-minimal:ppc64el (3.13.1-2) ... 108s Selecting previously unselected package python3.13-minimal. 108s Preparing to unpack .../python3.13-minimal_3.13.1-2_ppc64el.deb ... 108s Unpacking python3.13-minimal (3.13.1-2) ... 108s Setting up libpython3.13-minimal:ppc64el (3.13.1-2) ... 108s Setting up python3.13-minimal (3.13.1-2) ... 109s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74345 files and directories currently installed.) 109s Preparing to unpack .../python3-minimal_3.13.1-1~exp2_ppc64el.deb ... 109s Unpacking python3-minimal (3.13.1-1~exp2) over (3.12.8-1) ... 109s Setting up python3-minimal (3.13.1-1~exp2) ... 109s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74345 files and directories currently installed.) 109s Preparing to unpack .../python3_3.13.1-1~exp2_ppc64el.deb ... 109s Unpacking python3 (3.13.1-1~exp2) over (3.12.8-1) ... 109s Selecting previously unselected package libpython3.13-stdlib:ppc64el. 109s Preparing to unpack .../libpython3.13-stdlib_3.13.1-2_ppc64el.deb ... 109s Unpacking libpython3.13-stdlib:ppc64el (3.13.1-2) ... 109s Selecting previously unselected package python3.13. 109s Preparing to unpack .../python3.13_3.13.1-2_ppc64el.deb ... 109s Unpacking python3.13 (3.13.1-2) ... 109s Preparing to unpack .../libpython3-stdlib_3.13.1-1~exp2_ppc64el.deb ... 109s Unpacking libpython3-stdlib:ppc64el (3.13.1-1~exp2) over (3.12.8-1) ... 109s Setting up libpython3.13-stdlib:ppc64el (3.13.1-2) ... 109s Setting up libpython3-stdlib:ppc64el (3.13.1-1~exp2) ... 109s Setting up python3.13 (3.13.1-2) ... 110s Setting up python3 (3.13.1-1~exp2) ... 110s /usr/bin/py3clean:101: DeprecationWarning: glob.glob1 is deprecated and will be removed in Python 3.15. Use glob.glob and pass a directory to its root_dir argument instead. 110s for fn in glob1(directory, "%s.*" % fname): 110s Processing triggers for man-db (2.13.0-1) ... 111s Processing triggers for systemd (257-2ubuntu1) ... 111s Reading package lists... 111s Building dependency tree... 111s Reading state information... 112s Starting pkgProblemResolver with broken count: 0 112s Starting 2 pkgProblemResolver with broken count: 0 112s Done 112s The following packages will be REMOVED: 112s python3.12* python3.12-minimal* 113s 0 upgraded, 0 newly installed, 2 to remove and 0 not upgraded. 113s After this operation, 9889 kB disk space will be freed. 113s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74762 files and directories currently installed.) 113s Removing python3.12 (3.12.8-3) ... 113s Removing python3.12-minimal (3.12.8-3) ... 113s /usr/bin/py3clean:125: DeprecationWarning: glob.glob1 is deprecated and will be removed in Python 3.15. Use glob.glob and pass a directory to its root_dir argument instead. 113s for fn in glob1(directory, "%s.%s.py[co]" % (fname, magic_tag)): 114s Processing triggers for man-db (2.13.0-1) ... 114s Processing triggers for systemd (257-2ubuntu1) ... 114s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74734 files and directories currently installed.) 114s Purging configuration files for python3.12-minimal (3.12.8-3) ... 117s autopkgtest [01:42:33]: testbed running kernel: Linux 6.11.0-8-generic #8-Ubuntu SMP Mon Sep 16 13:49:23 UTC 2024 117s autopkgtest [01:42:33]: @@@@@@@@@@@@@@@@@@@@ apt-source python-gffutils 119s Get:1 http://ftpmaster.internal/ubuntu plucky/universe python-gffutils 0.13-1 (dsc) [2351 B] 119s Get:2 http://ftpmaster.internal/ubuntu plucky/universe python-gffutils 0.13-1 (tar) [1560 kB] 119s Get:3 http://ftpmaster.internal/ubuntu plucky/universe python-gffutils 0.13-1 (diff) [5024 B] 119s gpgv: Signature made Sat Apr 13 20:25:45 2024 UTC 119s gpgv: using RSA key 8F6DE104377F3B11E741748731F3144544A1741A 119s gpgv: issuer "tchet@debian.org" 119s gpgv: Can't check signature: No public key 119s dpkg-source: warning: cannot verify inline signature for ./python-gffutils_0.13-1.dsc: no acceptable signature found 119s autopkgtest [01:42:35]: testing package python-gffutils version 0.13-1 119s autopkgtest [01:42:35]: build not needed 122s autopkgtest [01:42:38]: test run-unit-test: preparing testbed 123s Reading package lists... 123s Building dependency tree... 123s Reading state information... 123s Starting pkgProblemResolver with broken count: 0 123s Starting 2 pkgProblemResolver with broken count: 0 123s Done 124s The following NEW packages will be installed: 124s fontconfig-config fonts-dejavu-core fonts-dejavu-mono fonts-urw-base35 124s libblas3 libcairo2 libdeflate0 libfontconfig1 libfontenc1 libgfortran5 124s libgomp1 libgraphite2-3 libharfbuzz0b libimagequant0 libjbig0 libjpeg-turbo8 124s libjpeg8 liblapack3 liblcms2-2 liblerc4 libopenjp2-7 libpixman-1-0 libraqm0 124s libsharpyuv0 libtiff6 libwebp7 libwebpdemux2 libwebpmux3 libxcb-render0 124s libxcb-shm0 libxrender1 python3-argcomplete python3-argh python3-biopython 124s python3-cairo python3-freetype python3-gffutils python3-importlib-metadata 124s python3-iniconfig python3-numpy python3-packaging python3-pil python3-pluggy 124s python3-pyfaidx python3-pytest python3-reportlab python3-rlpycairo 124s python3-simplejson sgml-base w3c-sgml-lib x11-common xfonts-encodings 124s xfonts-utils xml-core 124s 0 upgraded, 54 newly installed, 0 to remove and 0 not upgraded. 124s Need to get 31.2 MB of archives. 124s After this operation, 119 MB of additional disk space will be used. 124s Get:1 http://ftpmaster.internal/ubuntu plucky/main ppc64el sgml-base all 1.31 [11.4 kB] 124s Get:2 http://ftpmaster.internal/ubuntu plucky/main ppc64el fonts-dejavu-mono all 2.37-8 [502 kB] 124s Get:3 http://ftpmaster.internal/ubuntu plucky/main ppc64el fonts-dejavu-core all 2.37-8 [835 kB] 124s Get:4 http://ftpmaster.internal/ubuntu plucky/main ppc64el libfontenc1 ppc64el 1:1.1.8-1build1 [15.8 kB] 124s Get:5 http://ftpmaster.internal/ubuntu plucky/main ppc64el x11-common all 1:7.7+23ubuntu3 [21.7 kB] 124s Get:6 http://ftpmaster.internal/ubuntu plucky/main ppc64el xfonts-encodings all 1:1.0.5-0ubuntu2 [578 kB] 124s Get:7 http://ftpmaster.internal/ubuntu plucky/main ppc64el xfonts-utils ppc64el 1:7.7+7 [114 kB] 124s Get:8 http://ftpmaster.internal/ubuntu plucky/main ppc64el fonts-urw-base35 all 20200910-8 [11.0 MB] 125s Get:9 http://ftpmaster.internal/ubuntu plucky/main ppc64el fontconfig-config ppc64el 2.15.0-1.1ubuntu2 [37.4 kB] 125s Get:10 http://ftpmaster.internal/ubuntu plucky/main ppc64el libblas3 ppc64el 3.12.0-4 [222 kB] 125s Get:11 http://ftpmaster.internal/ubuntu plucky/main ppc64el libfontconfig1 ppc64el 2.15.0-1.1ubuntu2 [190 kB] 125s Get:12 http://ftpmaster.internal/ubuntu plucky/main ppc64el libpixman-1-0 ppc64el 0.44.0-3 [334 kB] 125s Get:13 http://ftpmaster.internal/ubuntu plucky/main ppc64el libxcb-render0 ppc64el 1.17.0-2 [17.2 kB] 125s Get:14 http://ftpmaster.internal/ubuntu plucky/main ppc64el libxcb-shm0 ppc64el 1.17.0-2 [5980 B] 125s Get:15 http://ftpmaster.internal/ubuntu plucky/main ppc64el libxrender1 ppc64el 1:0.9.10-1.1build1 [23.1 kB] 125s Get:16 http://ftpmaster.internal/ubuntu plucky/main ppc64el libcairo2 ppc64el 1.18.2-2 [747 kB] 125s Get:17 http://ftpmaster.internal/ubuntu plucky/main ppc64el libdeflate0 ppc64el 1.22-1 [63.3 kB] 125s Get:18 http://ftpmaster.internal/ubuntu plucky/main ppc64el libgfortran5 ppc64el 14.2.0-12ubuntu1 [571 kB] 125s Get:19 http://ftpmaster.internal/ubuntu plucky/main ppc64el libgomp1 ppc64el 14.2.0-12ubuntu1 [161 kB] 125s Get:20 http://ftpmaster.internal/ubuntu plucky/main ppc64el libgraphite2-3 ppc64el 1.3.14-2ubuntu1 [84.6 kB] 125s Get:21 http://ftpmaster.internal/ubuntu plucky/main ppc64el libharfbuzz0b ppc64el 10.1.0-1 [597 kB] 125s Get:22 http://ftpmaster.internal/ubuntu plucky/main ppc64el libimagequant0 ppc64el 2.18.0-1build1 [43.2 kB] 125s Get:23 http://ftpmaster.internal/ubuntu plucky/main ppc64el libjpeg-turbo8 ppc64el 2.1.5-3ubuntu2 [215 kB] 125s Get:24 http://ftpmaster.internal/ubuntu plucky/main ppc64el libjpeg8 ppc64el 8c-2ubuntu11 [2148 B] 125s Get:25 http://ftpmaster.internal/ubuntu plucky/main ppc64el liblapack3 ppc64el 3.12.0-4 [2814 kB] 125s Get:26 http://ftpmaster.internal/ubuntu plucky/main ppc64el liblcms2-2 ppc64el 2.16-2 [243 kB] 125s Get:27 http://ftpmaster.internal/ubuntu plucky/main ppc64el liblerc4 ppc64el 4.0.0+ds-5ubuntu1 [298 kB] 125s Get:28 http://ftpmaster.internal/ubuntu plucky/main ppc64el libraqm0 ppc64el 0.10.2-1 [19.2 kB] 125s Get:29 http://ftpmaster.internal/ubuntu plucky/main ppc64el libsharpyuv0 ppc64el 1.4.0-0.1 [22.0 kB] 125s Get:30 http://ftpmaster.internal/ubuntu plucky/main ppc64el libjbig0 ppc64el 2.1-6.1ubuntu2 [35.9 kB] 125s Get:31 http://ftpmaster.internal/ubuntu plucky/main ppc64el libwebp7 ppc64el 1.4.0-0.1 [309 kB] 125s Get:32 http://ftpmaster.internal/ubuntu plucky/main ppc64el libtiff6 ppc64el 4.5.1+git230720-4ubuntu4 [272 kB] 125s Get:33 http://ftpmaster.internal/ubuntu plucky/main ppc64el libwebpdemux2 ppc64el 1.4.0-0.1 [14.1 kB] 125s Get:34 http://ftpmaster.internal/ubuntu plucky/main ppc64el libwebpmux3 ppc64el 1.4.0-0.1 [31.4 kB] 125s Get:35 http://ftpmaster.internal/ubuntu plucky/universe ppc64el python3-argcomplete all 3.5.1-1ubuntu1 [35.6 kB] 125s Get:36 http://ftpmaster.internal/ubuntu plucky/main ppc64el python3-numpy ppc64el 1:1.26.4+ds-12 [4917 kB] 125s Get:37 http://ftpmaster.internal/ubuntu plucky/main ppc64el libopenjp2-7 ppc64el 2.5.0-2ubuntu2 [247 kB] 125s Get:38 http://ftpmaster.internal/ubuntu plucky/main ppc64el python3-pil ppc64el 10.4.0-1ubuntu2 [606 kB] 125s Get:39 http://ftpmaster.internal/ubuntu plucky/main ppc64el python3-cairo ppc64el 1.26.1-2build1 [150 kB] 125s Get:40 http://ftpmaster.internal/ubuntu plucky/universe ppc64el python3-freetype all 2.5.1-1 [92.3 kB] 125s Get:41 http://ftpmaster.internal/ubuntu plucky/universe ppc64el python3-rlpycairo all 0.3.0-3 [9130 B] 125s Get:42 http://ftpmaster.internal/ubuntu plucky/universe ppc64el python3-reportlab all 4.2.5-1 [1107 kB] 125s Get:43 http://ftpmaster.internal/ubuntu plucky/main ppc64el xml-core all 0.19 [20.3 kB] 125s Get:44 http://ftpmaster.internal/ubuntu plucky/universe ppc64el w3c-sgml-lib all 1.3-3 [280 kB] 125s Get:45 http://ftpmaster.internal/ubuntu plucky/universe ppc64el python3-biopython ppc64el 1.84+dfsg-4build1 [1745 kB] 125s Get:46 http://ftpmaster.internal/ubuntu plucky/universe ppc64el python3-argh all 0.31.3-1 [27.0 kB] 125s Get:47 http://ftpmaster.internal/ubuntu plucky/main ppc64el python3-importlib-metadata all 8.5.0-1 [20.7 kB] 125s Get:48 http://ftpmaster.internal/ubuntu plucky/main ppc64el python3-packaging all 24.2-1 [51.5 kB] 125s Get:49 http://ftpmaster.internal/ubuntu plucky/universe ppc64el python3-pyfaidx all 0.8.1.3-1 [29.7 kB] 125s Get:50 http://ftpmaster.internal/ubuntu plucky/main ppc64el python3-simplejson ppc64el 3.19.3-1build1 [60.7 kB] 125s Get:51 http://ftpmaster.internal/ubuntu plucky/universe ppc64el python3-gffutils all 0.13-1 [1081 kB] 125s Get:52 http://ftpmaster.internal/ubuntu plucky/universe ppc64el python3-iniconfig all 1.1.1-2 [6024 B] 125s Get:53 http://ftpmaster.internal/ubuntu plucky/universe ppc64el python3-pluggy all 1.5.0-1 [21.0 kB] 125s Get:54 http://ftpmaster.internal/ubuntu plucky/universe ppc64el python3-pytest all 8.3.3-1 [251 kB] 126s Fetched 31.2 MB in 2s (16.5 MB/s) 126s Selecting previously unselected package sgml-base. 126s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74734 files and directories currently installed.) 126s Preparing to unpack .../00-sgml-base_1.31_all.deb ... 126s Unpacking sgml-base (1.31) ... 126s Selecting previously unselected package fonts-dejavu-mono. 126s Preparing to unpack .../01-fonts-dejavu-mono_2.37-8_all.deb ... 126s Unpacking fonts-dejavu-mono (2.37-8) ... 126s Selecting previously unselected package fonts-dejavu-core. 126s Preparing to unpack .../02-fonts-dejavu-core_2.37-8_all.deb ... 126s Unpacking fonts-dejavu-core (2.37-8) ... 126s Selecting previously unselected package libfontenc1:ppc64el. 126s Preparing to unpack .../03-libfontenc1_1%3a1.1.8-1build1_ppc64el.deb ... 126s Unpacking libfontenc1:ppc64el (1:1.1.8-1build1) ... 126s Selecting previously unselected package x11-common. 126s Preparing to unpack .../04-x11-common_1%3a7.7+23ubuntu3_all.deb ... 126s Unpacking x11-common (1:7.7+23ubuntu3) ... 126s Selecting previously unselected package xfonts-encodings. 126s Preparing to unpack .../05-xfonts-encodings_1%3a1.0.5-0ubuntu2_all.deb ... 126s Unpacking xfonts-encodings (1:1.0.5-0ubuntu2) ... 126s Selecting previously unselected package xfonts-utils. 126s Preparing to unpack .../06-xfonts-utils_1%3a7.7+7_ppc64el.deb ... 126s Unpacking xfonts-utils (1:7.7+7) ... 126s Selecting previously unselected package fonts-urw-base35. 126s Preparing to unpack .../07-fonts-urw-base35_20200910-8_all.deb ... 126s Unpacking fonts-urw-base35 (20200910-8) ... 126s Selecting previously unselected package fontconfig-config. 126s Preparing to unpack .../08-fontconfig-config_2.15.0-1.1ubuntu2_ppc64el.deb ... 127s Unpacking fontconfig-config (2.15.0-1.1ubuntu2) ... 127s Selecting previously unselected package libblas3:ppc64el. 127s Preparing to unpack .../09-libblas3_3.12.0-4_ppc64el.deb ... 127s Unpacking libblas3:ppc64el (3.12.0-4) ... 127s Selecting previously unselected package libfontconfig1:ppc64el. 127s Preparing to unpack .../10-libfontconfig1_2.15.0-1.1ubuntu2_ppc64el.deb ... 127s Unpacking libfontconfig1:ppc64el (2.15.0-1.1ubuntu2) ... 127s Selecting previously unselected package libpixman-1-0:ppc64el. 127s Preparing to unpack .../11-libpixman-1-0_0.44.0-3_ppc64el.deb ... 127s Unpacking libpixman-1-0:ppc64el (0.44.0-3) ... 127s Selecting previously unselected package libxcb-render0:ppc64el. 127s Preparing to unpack .../12-libxcb-render0_1.17.0-2_ppc64el.deb ... 127s Unpacking libxcb-render0:ppc64el (1.17.0-2) ... 127s Selecting previously unselected package libxcb-shm0:ppc64el. 127s Preparing to unpack .../13-libxcb-shm0_1.17.0-2_ppc64el.deb ... 127s Unpacking libxcb-shm0:ppc64el (1.17.0-2) ... 127s Selecting previously unselected package libxrender1:ppc64el. 127s Preparing to unpack .../14-libxrender1_1%3a0.9.10-1.1build1_ppc64el.deb ... 127s Unpacking libxrender1:ppc64el (1:0.9.10-1.1build1) ... 127s Selecting previously unselected package libcairo2:ppc64el. 127s Preparing to unpack .../15-libcairo2_1.18.2-2_ppc64el.deb ... 127s Unpacking libcairo2:ppc64el (1.18.2-2) ... 127s Selecting previously unselected package libdeflate0:ppc64el. 127s Preparing to unpack .../16-libdeflate0_1.22-1_ppc64el.deb ... 127s Unpacking libdeflate0:ppc64el (1.22-1) ... 127s Selecting previously unselected package libgfortran5:ppc64el. 127s Preparing to unpack .../17-libgfortran5_14.2.0-12ubuntu1_ppc64el.deb ... 127s Unpacking libgfortran5:ppc64el (14.2.0-12ubuntu1) ... 127s Selecting previously unselected package libgomp1:ppc64el. 127s Preparing to unpack .../18-libgomp1_14.2.0-12ubuntu1_ppc64el.deb ... 127s Unpacking libgomp1:ppc64el (14.2.0-12ubuntu1) ... 127s Selecting previously unselected package libgraphite2-3:ppc64el. 127s Preparing to unpack .../19-libgraphite2-3_1.3.14-2ubuntu1_ppc64el.deb ... 127s Unpacking libgraphite2-3:ppc64el (1.3.14-2ubuntu1) ... 127s Selecting previously unselected package libharfbuzz0b:ppc64el. 127s Preparing to unpack .../20-libharfbuzz0b_10.1.0-1_ppc64el.deb ... 127s Unpacking libharfbuzz0b:ppc64el (10.1.0-1) ... 127s Selecting previously unselected package libimagequant0:ppc64el. 127s Preparing to unpack .../21-libimagequant0_2.18.0-1build1_ppc64el.deb ... 127s Unpacking libimagequant0:ppc64el (2.18.0-1build1) ... 127s Selecting previously unselected package libjpeg-turbo8:ppc64el. 127s Preparing to unpack .../22-libjpeg-turbo8_2.1.5-3ubuntu2_ppc64el.deb ... 127s Unpacking libjpeg-turbo8:ppc64el (2.1.5-3ubuntu2) ... 127s Selecting previously unselected package libjpeg8:ppc64el. 127s Preparing to unpack .../23-libjpeg8_8c-2ubuntu11_ppc64el.deb ... 127s Unpacking libjpeg8:ppc64el (8c-2ubuntu11) ... 127s Selecting previously unselected package liblapack3:ppc64el. 127s Preparing to unpack .../24-liblapack3_3.12.0-4_ppc64el.deb ... 127s Unpacking liblapack3:ppc64el (3.12.0-4) ... 127s Selecting previously unselected package liblcms2-2:ppc64el. 127s Preparing to unpack .../25-liblcms2-2_2.16-2_ppc64el.deb ... 127s Unpacking liblcms2-2:ppc64el (2.16-2) ... 127s Selecting previously unselected package liblerc4:ppc64el. 127s Preparing to unpack .../26-liblerc4_4.0.0+ds-5ubuntu1_ppc64el.deb ... 127s Unpacking liblerc4:ppc64el (4.0.0+ds-5ubuntu1) ... 127s Selecting previously unselected package libraqm0:ppc64el. 127s Preparing to unpack .../27-libraqm0_0.10.2-1_ppc64el.deb ... 127s Unpacking libraqm0:ppc64el (0.10.2-1) ... 127s Selecting previously unselected package libsharpyuv0:ppc64el. 127s Preparing to unpack .../28-libsharpyuv0_1.4.0-0.1_ppc64el.deb ... 127s Unpacking libsharpyuv0:ppc64el (1.4.0-0.1) ... 127s Selecting previously unselected package libjbig0:ppc64el. 127s Preparing to unpack .../29-libjbig0_2.1-6.1ubuntu2_ppc64el.deb ... 127s Unpacking libjbig0:ppc64el (2.1-6.1ubuntu2) ... 127s Selecting previously unselected package libwebp7:ppc64el. 127s Preparing to unpack .../30-libwebp7_1.4.0-0.1_ppc64el.deb ... 127s Unpacking libwebp7:ppc64el (1.4.0-0.1) ... 127s Selecting previously unselected package libtiff6:ppc64el. 127s Preparing to unpack .../31-libtiff6_4.5.1+git230720-4ubuntu4_ppc64el.deb ... 127s Unpacking libtiff6:ppc64el (4.5.1+git230720-4ubuntu4) ... 127s Selecting previously unselected package libwebpdemux2:ppc64el. 127s Preparing to unpack .../32-libwebpdemux2_1.4.0-0.1_ppc64el.deb ... 127s Unpacking libwebpdemux2:ppc64el (1.4.0-0.1) ... 127s Selecting previously unselected package libwebpmux3:ppc64el. 127s Preparing to unpack .../33-libwebpmux3_1.4.0-0.1_ppc64el.deb ... 127s Unpacking libwebpmux3:ppc64el (1.4.0-0.1) ... 127s Selecting previously unselected package python3-argcomplete. 127s Preparing to unpack .../34-python3-argcomplete_3.5.1-1ubuntu1_all.deb ... 127s Unpacking python3-argcomplete (3.5.1-1ubuntu1) ... 127s Selecting previously unselected package python3-numpy. 127s Preparing to unpack .../35-python3-numpy_1%3a1.26.4+ds-12_ppc64el.deb ... 127s Unpacking python3-numpy (1:1.26.4+ds-12) ... 128s Selecting previously unselected package libopenjp2-7:ppc64el. 128s Preparing to unpack .../36-libopenjp2-7_2.5.0-2ubuntu2_ppc64el.deb ... 128s Unpacking libopenjp2-7:ppc64el (2.5.0-2ubuntu2) ... 128s Selecting previously unselected package python3-pil:ppc64el. 128s Preparing to unpack .../37-python3-pil_10.4.0-1ubuntu2_ppc64el.deb ... 128s Unpacking python3-pil:ppc64el (10.4.0-1ubuntu2) ... 128s Selecting previously unselected package python3-cairo. 128s Preparing to unpack .../38-python3-cairo_1.26.1-2build1_ppc64el.deb ... 128s Unpacking python3-cairo (1.26.1-2build1) ... 128s Selecting previously 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python3-biopython (1.84+dfsg-4build1) ... 128s Selecting previously unselected package python3-argh. 128s Preparing to unpack .../45-python3-argh_0.31.3-1_all.deb ... 128s Unpacking python3-argh (0.31.3-1) ... 128s Selecting previously unselected package python3-importlib-metadata. 128s Preparing to unpack .../46-python3-importlib-metadata_8.5.0-1_all.deb ... 128s Unpacking python3-importlib-metadata (8.5.0-1) ... 128s Selecting previously unselected package python3-packaging. 128s Preparing to unpack .../47-python3-packaging_24.2-1_all.deb ... 128s Unpacking python3-packaging (24.2-1) ... 128s Selecting previously unselected package python3-pyfaidx. 128s Preparing to unpack .../48-python3-pyfaidx_0.8.1.3-1_all.deb ... 128s Unpacking python3-pyfaidx (0.8.1.3-1) ... 128s Selecting previously unselected package python3-simplejson. 128s Preparing to unpack .../49-python3-simplejson_3.19.3-1build1_ppc64el.deb ... 128s Unpacking python3-simplejson (3.19.3-1build1) ... 128s Selecting previously unselected package python3-gffutils. 128s Preparing to unpack .../50-python3-gffutils_0.13-1_all.deb ... 128s Unpacking python3-gffutils (0.13-1) ... 128s Selecting previously unselected package python3-iniconfig. 128s Preparing to unpack .../51-python3-iniconfig_1.1.1-2_all.deb ... 128s Unpacking python3-iniconfig (1.1.1-2) ... 128s Selecting previously unselected package python3-pluggy. 128s Preparing to unpack .../52-python3-pluggy_1.5.0-1_all.deb ... 128s Unpacking python3-pluggy (1.5.0-1) ... 128s Selecting previously unselected package python3-pytest. 128s Preparing to unpack .../53-python3-pytest_8.3.3-1_all.deb ... 128s Unpacking python3-pytest (8.3.3-1) ... 128s Setting up libgraphite2-3:ppc64el (1.3.14-2ubuntu1) ... 128s Setting up liblcms2-2:ppc64el (2.16-2) ... 128s Setting up python3-iniconfig (1.1.1-2) ... 129s Setting up libpixman-1-0:ppc64el (0.44.0-3) ... 129s Setting up python3-argh (0.31.3-1) ... 129s Setting up libsharpyuv0:ppc64el (1.4.0-0.1) ... 129s Setting up liblerc4:ppc64el (4.0.0+ds-5ubuntu1) ... 129s Setting up python3-importlib-metadata (8.5.0-1) ... 129s Setting up libxrender1:ppc64el (1:0.9.10-1.1build1) ... 129s Setting up libxcb-render0:ppc64el (1.17.0-2) ... 129s Setting up x11-common (1:7.7+23ubuntu3) ... 129s Setting up libdeflate0:ppc64el (1.22-1) ... 129s Setting up libxcb-shm0:ppc64el (1.17.0-2) ... 129s Setting up libgomp1:ppc64el (14.2.0-12ubuntu1) ... 129s Setting up python3-freetype (2.5.1-1) ... 129s Setting up libjbig0:ppc64el (2.1-6.1ubuntu2) ... 129s Setting up python3-simplejson (3.19.3-1build1) ... 130s Setting up libfontenc1:ppc64el (1:1.1.8-1build1) ... 130s Setting up libblas3:ppc64el (3.12.0-4) ... 130s update-alternatives: using /usr/lib/powerpc64le-linux-gnu/blas/libblas.so.3 to provide /usr/lib/powerpc64le-linux-gnu/libblas.so.3 (libblas.so.3-powerpc64le-linux-gnu) in auto mode 130s Setting up python3-packaging (24.2-1) ... 130s Setting up xfonts-encodings (1:1.0.5-0ubuntu2) ... 130s Setting up libimagequant0:ppc64el (2.18.0-1build1) ... 130s Setting up fonts-dejavu-mono (2.37-8) ... 130s Setting up fonts-dejavu-core (2.37-8) ... 130s Setting up libjpeg-turbo8:ppc64el (2.1.5-3ubuntu2) ... 130s Setting up libgfortran5:ppc64el (14.2.0-12ubuntu1) ... 130s Setting up python3-pluggy (1.5.0-1) ... 130s Setting up libwebp7:ppc64el (1.4.0-0.1) ... 130s Setting up libopenjp2-7:ppc64el (2.5.0-2ubuntu2) ... 130s Setting up libharfbuzz0b:ppc64el (10.1.0-1) ... 130s Setting up sgml-base (1.31) ... 130s Setting up python3-argcomplete (3.5.1-1ubuntu1) ... 130s Setting up libwebpmux3:ppc64el (1.4.0-0.1) ... 130s Setting up libjpeg8:ppc64el (8c-2ubuntu11) ... 130s Setting up python3-pyfaidx (0.8.1.3-1) ... 130s Setting up liblapack3:ppc64el (3.12.0-4) ... 130s update-alternatives: using /usr/lib/powerpc64le-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/powerpc64le-linux-gnu/liblapack.so.3 (liblapack.so.3-powerpc64le-linux-gnu) in auto mode 130s Setting up fontconfig-config (2.15.0-1.1ubuntu2) ... 130s Setting up python3-pytest (8.3.3-1) ... 131s Setting up libwebpdemux2:ppc64el (1.4.0-0.1) ... 131s Setting up xfonts-utils (1:7.7+7) ... 131s Setting up libraqm0:ppc64el (0.10.2-1) ... 131s Setting up python3-numpy (1:1.26.4+ds-12) ... 133s Setting up libtiff6:ppc64el (4.5.1+git230720-4ubuntu4) ... 133s Setting up xml-core (0.19) ... 133s Setting up libfontconfig1:ppc64el (2.15.0-1.1ubuntu2) ... 133s Setting up fonts-urw-base35 (20200910-8) ... 133s Setting up libcairo2:ppc64el (1.18.2-2) ... 133s Setting up python3-pil:ppc64el (10.4.0-1ubuntu2) ... 134s Setting up python3-cairo (1.26.1-2build1) ... 134s Setting up python3-rlpycairo (0.3.0-3) ... 134s Setting up python3-reportlab (4.2.5-1) ... 135s Processing triggers for libc-bin (2.40-4ubuntu1) ... 135s Processing triggers for man-db (2.13.0-1) ... 136s Processing triggers for sgml-base (1.31) ... 136s Setting up w3c-sgml-lib (1.3-3) ... 170s Setting up python3-biopython (1.84+dfsg-4build1) ... 171s Setting up python3-gffutils (0.13-1) ... 172s autopkgtest [01:43:28]: test run-unit-test: [----------------------- 172s + pkg=python-gffutils 172s + [ /tmp/autopkgtest.IFTtay/autopkgtest_tmp = ] 172s + cd /tmp/autopkgtest.IFTtay/autopkgtest_tmp 172s + export HOME=/tmp/autopkgtest.IFTtay/autopkgtest_tmp 172s + cp -r /usr/lib/python3/dist-packages/gffutils/test ./ 172s + pytest --doctest-modules -m not slow test 173s ============================= test session starts ============================== 173s platform linux -- Python 3.13.1, pytest-8.3.3, pluggy-1.5.0 173s rootdir: /tmp/autopkgtest.IFTtay/autopkgtest_tmp 173s plugins: typeguard-4.4.1 173s collected 110 items 173s 173s test/feature_test.py ........... [ 10%] 173s test/helpers_test.py .. [ 11%] 173s test/parser_test.py .................. [ 28%] 174s test/test_1.py ...........x..........s........... [ 59%] 174s test/test_biopython_integration.py . [ 60%] 176s test/test_cli.py . [ 60%] 176s test/test_issues.py ........................ [ 82%] 176s test/test_iterators.py .... [ 86%] 176s test/test_merge.py ......... [ 94%] 176s test/test_merge_all.py ...... [100%] 176s 176s =============================== warnings summary =============================== 176s test/performance_evaluation.py:190 176s /tmp/autopkgtest.IFTtay/autopkgtest_tmp/test/performance_evaluation.py:190: PytestUnknownMarkWarning: Unknown pytest.mark.slow - is this a typo? You can register custom marks to avoid this warning - for details, see https://docs.pytest.org/en/stable/how-to/mark.html 176s @pytest.mark.slow 176s 176s test/performance_evaluation.py:208 176s /tmp/autopkgtest.IFTtay/autopkgtest_tmp/test/performance_evaluation.py:208: PytestUnknownMarkWarning: Unknown pytest.mark.slow - is this a typo? You can register custom marks to avoid this warning - for details, see https://docs.pytest.org/en/stable/how-to/mark.html 176s @pytest.mark.slow 176s 176s test/test_1.py:485 176s test/test_1.py:485: PytestCollectionWarning: yield tests were removed in pytest 4.0 - test_region will be ignored 176s def test_region(): 176s 176s test/parser_test.py::test_parser_from_string 176s /usr/lib/python3/dist-packages/_pytest/python.py:163: PytestReturnNotNoneWarning: Expected None, but test/parser_test.py::test_parser_from_string returned True, which will be an error in a future version of pytest. Did you mean to use `assert` instead of `return`? 176s warnings.warn( 176s 176s test/parser_test.py::test_inconsistent_dialect 176s test/test_1.py::test_disable_infer 176s test/test_issues.py::test_pr_172 176s /usr/lib/python3/dist-packages/gffutils/create.py:770: UserWarning: It appears you have a gene feature in your GTF file. You may want to use the `disable_infer_genes=True` option to speed up database creation 176s warnings.warn( 176s 176s test/test_1.py::test_disable_infer 176s /usr/lib/python3/dist-packages/gffutils/create.py:763: UserWarning: It appears you have a transcript feature in your GTF file. You may want to use the `disable_infer_transcripts=True` option to speed up database creation 176s warnings.warn( 176s 176s -- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html 176s ============ 108 passed, 1 skipped, 1 xfailed, 8 warnings in 3.70s ============= 177s autopkgtest [01:43:33]: test run-unit-test: -----------------------] 177s run-unit-test PASS 177s autopkgtest [01:43:33]: test run-unit-test: - - - - - - - - - - results - - - - - - - - - - 177s autopkgtest [01:43:33]: @@@@@@@@@@@@@@@@@@@@ summary 177s run-unit-test PASS 182s nova [W] Using flock in prodstack6-ppc64el 182s Creating nova instance adt-plucky-ppc64el-python-gffutils-20250104-014035-juju-7f2275-prod-proposed-migration-environment-2-f1a69571-1a7c-4e0e-8490-a349c9564db0 from image adt/ubuntu-plucky-ppc64el-server-20250103.img (UUID f20efbba-1df4-424c-8de8-0f24e2643aa4)... 182s nova [W] Timed out waiting for 1fc98aa2-69a4-42a9-b7bf-aec346ac2c7b to get deleted.