0s autopkgtest [17:39:57]: starting date and time: 2025-02-19 17:39:57+0000
  0s autopkgtest [17:39:57]: git checkout: 325255d2 Merge branch 'pin-any-arch' into 'ubuntu/production'
  0s autopkgtest [17:39:57]: host juju-7f2275-prod-proposed-migration-environment-20; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.0d8k3trr/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:sphinx --apt-upgrade python-biopython --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=sphinx/8.1.3-5 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest-ppc64el --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-20@bos03-ppc64el-18.secgroup --name adt-plucky-ppc64el-python-biopython-20250219-172152-juju-7f2275-prod-proposed-migration-environment-20-4f0860bc-69c2-46ab-b233-4cff83fbada6 --image adt/ubuntu-plucky-ppc64el-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-20 --net-id=net_prod-proposed-migration-ppc64el -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,keyserver.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com,radosgw.ps5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/
993s nova [W] Using flock in prodstack6-ppc64el
993s Creating nova instance adt-plucky-ppc64el-python-biopython-20250219-172152-juju-7f2275-prod-proposed-migration-environment-20-4f0860bc-69c2-46ab-b233-4cff83fbada6 from image adt/ubuntu-plucky-ppc64el-server-20250218.img (UUID 9318aa34-3d3c-43c5-86d2-aaf9390f2f5d)...
993s nova [E] nova boot failed (attempt #0):
993s nova [E] DEBUG (extension:189) found extension EntryPoint.parse('v1password = swiftclient.authv1:PasswordLoader')
993s DEBUG (extension:189) found extension EntryPoint.parse('noauth = cinderclient.contrib.noauth:CinderNoAuthLoader')
993s DEBUG (extension:189) found extension EntryPoint.parse('admin_token = keystoneauth1.loading._plugins.admin_token:AdminToken')
993s DEBUG (extension:189) found extension EntryPoint.parse('none = keystoneauth1.loading._plugins.noauth:NoAuth')
993s DEBUG (extension:189) found extension EntryPoint.parse('password = keystoneauth1.loading._plugins.identity.generic:Password')
993s DEBUG (extension:189) found extension EntryPoint.parse('token = keystoneauth1.loading._plugins.identity.generic:Token')
993s DEBUG (extension:189) found extension EntryPoint.parse('v2password = keystoneauth1.loading._plugins.identity.v2:Password')
993s DEBUG (extension:189) found extension EntryPoint.parse('v2token = keystoneauth1.loading._plugins.identity.v2:Token')
993s DEBUG (extension:189) found extension EntryPoint.parse('v3adfspassword = keystoneauth1.extras._saml2._loading:ADFSPassword')
993s DEBUG (extension:189) found extension EntryPoint.parse('v3applicationcredential = keystoneauth1.loading._plugins.identity.v3:ApplicationCredential')
993s DEBUG (extension:189) found extension EntryPoint.parse('v3fedkerb = keystoneauth1.extras.kerberos._loading:MappedKerberos')
993s DEBUG (extension:189) found extension EntryPoint.parse('v3kerberos = keystoneauth1.extras.kerberos._loading:Kerberos')
993s DEBUG (extension:189) found extension EntryPoint.parse('v3multifactor = keystoneauth1.loading._plugins.identity.v3:MultiFactor')
993s DEBUG (extension:189) found extension EntryPoint.parse('v3oauth1 = keystoneauth1.extras.oauth1._loading:V3OAuth1')
993s DEBUG (extension:189) found extension EntryPoint.parse('v3oidcaccesstoken = keystoneauth1.loading._plugins.identity.v3:OpenIDConnectAccessToken')
993s DEBUG (extension:189) found extension EntryPoint.parse('v3oidcauthcode = keystoneauth1.loading._plugins.identity.v3:OpenIDConnectAuthorizationCode')
993s DEBUG (extension:189) found extension EntryPoint.parse('v3oidcclientcredentials = keystoneauth1.loading._plugins.identity.v3:OpenIDConnectClientCredentials')
993s DEBUG (extension:189) found extension EntryPoint.parse('v3oidcpassword = keystoneauth1.loading._plugins.identity.v3:OpenIDConnectPassword')
993s DEBUG (extension:189) found extension EntryPoint.parse('v3password = keystoneauth1.loading._plugins.identity.v3:Password')
993s DEBUG (extension:189) found extension EntryPoint.parse('v3samlpassword = keystoneauth1.extras._saml2._loading:Saml2Password')
993s DEBUG (extension:189) found extension EntryPoint.parse('v3token = keystoneauth1.loading._plugins.identity.v3:Token')
993s DEBUG (extension:189) found extension EntryPoint.parse('v3tokenlessauth = keystoneauth1.loading._plugins.identity.v3:TokenlessAuth')
993s DEBUG (extension:189) found extension EntryPoint.parse('v3totp = keystoneauth1.loading._plugins.identity.v3:TOTP')
993s DEBUG (session:517) REQ: curl -g -i -X GET https://keystone.ps6.canonical.com:5000/v3 -H "Accept: application/json" -H "User-Agent: nova keystoneauth1/4.0.0 python-requests/2.22.0 CPython/3.8.10"
993s DEBUG (connectionpool:962) Starting new HTTPS connection (1): keystone.ps6.canonical.com:5000
993s DEBUG (connectionpool:429) https://keystone.ps6.canonical.com:5000 "GET /v3 HTTP/1.1" 200 267
993s DEBUG (session:548) RESP: [200] Connection: Keep-Alive Content-Length: 267 Content-Type: application/json Date: Wed, 19 Feb 2025 17:40:36 GMT Keep-Alive: timeout=75, max=1000 Server: Apache/2.4.52 (Ubuntu) Vary: X-Auth-Token x-openstack-request-id: req-175bd954-8a4c-4475-bf43-ea4f24e93df4
993s DEBUG (session:580) RESP BODY: {"version": {"id": "v3.14", "status": "stable", "updated": "2020-04-07T00:00:00Z", "links": [{"rel": "self", "href": "https://keystone.ps6.canonical.com:5000/v3/"}], "media-types": [{"base": "application/json", "type": "application/vnd.openstack.identity-v3+json"}]}}
993s DEBUG (session:946) GET call to https://keystone.ps6.canonical.com:5000/v3 used request id req-175bd954-8a4c-4475-bf43-ea4f24e93df4
993s DEBUG (base:182) Making authentication request to https://keystone.ps6.canonical.com:5000/v3/auth/tokens
993s DEBUG (connectionpool:429) https://keystone.ps6.canonical.com:5000 "POST /v3/auth/tokens HTTP/1.1" 201 12525
993s DEBUG (base:187) {"token": {"methods": ["password"], "user": {"domain": {"id": "default", "name": "Default"}, "id": "c871debdeffd4cb8b69ce618fc4aa361", "name": "prod-proposed-migration-ppc64el", "password_expires_at": null}, "audit_ids": ["pSNORb8kSXuRLYep0nybiw"], "expires_at": "2025-02-20T17:40:36.000000Z", "issued_at": "2025-02-19T17:40:36.000000Z", "project": {"domain": {"id": "default", "name": "Default"}, "id": "623df63b80274c21bc79a0c35e68d615", "name": "prod-proposed-migration-ppc64el_project"}, "is_domain": false, "roles": [{"id": "15cf997650e345b7b21c02b5cdb7d84a", "name": "member"}, {"id": "86bf3043974746c2bf52c2a9f362f986", "name": "reader"}, {"id": "80674fb26dab46e9a6bd57e7f8193360", "name": "load-balancer_member"}], "is_admin_project": false, "catalog": [{"endpoints": [{"id": "213cdf38198c4581bd5b7d6d0836923b", "interface": "internal", "region_id": "prodstack6", "url": "https://radosgw-internal.ps6.canonical.com:443/", "region": "prodstack6"}, {"id": "67061eee26944a1a8009f9d07be19738", "interface": "public", "region_id": "prodstack6", "url": "https://radosgw.ps6.canonical.com:443/", "region": "prodstack6"}, {"id": "fc88c52c749a47d08a24a2c7efbde01b", "interface": "admin", "region_id": "prodstack6", "url": "https://radosgw-admin.ps6.canonical.com:443/", "region": "prodstack6"}], "id": "06e4714942634054bf9aa11715312b4e", "type": "s3", "name": "s3"}, {"endpoints": [{"id": "8aa44c94b63746bd9b37f1008ad55fa8", "interface": "admin", "region_id": "prodstack6", "url": "https://aodh-admin.ps6.canonical.com:8042", "region": "prodstack6"}, {"id": "92cf08a80a0242ebbca8ec893cf332b1", "interface": "public", "region_id": "prodstack6", "url": "https://aodh.ps6.canonical.com:8042", "region": "prodstack6"}, {"id": "d8139c6e11ae4edcb78981c12bd53212", "interface": "internal", "region_id": "prodstack6", "url": "https://aodh-internal.ps6.canonical.com:8042", "region": "prodstack6"}], "id": "2fb939b0b969435c8f0c5fa4edb4de94", "type": "alarming", "name": "aodh"}, {"endpoints": [{"id": "a49fcc80e658411885f88cdd8432a571", "interface": "internal", "region_id": "prodstack6", "url": "https://heat-internal.ps6.canonical.com:8000/v1", "region": "prodstack6"}, {"id": "b23866fddba8415885b06c064c34b94b", "interface": "public", "region_id": "prodstack6", "url": "https://heat.ps6.canonical.com:8000/v1", "region": "prodstack6"}, {"id": "f84ae55197f94b8392a678f35c82ca26", "interface": "admin", "region_id": "prodstack6", "url": "https://heat-admin.ps6.canonical.com:8000/v1", "region": "prodstack6"}], "id": "3d4b59f7dab644b2b527e8e96b697545", "type": "cloudformation", "name": "heat-cfn"}, {"endpoints": [{"id": "2e0143334c6241169f45f1c11970c6bc", "interface": "public", "region_id": "prodstack6", "url": "https://heat.ps6.canonical.com:8004/v1/623df63b80274c21bc79a0c35e68d615", "region": "prodstack6"}, {"id": "5e19c32243c04a3faf1e5f9ab900c260", "interface": "internal", "region_id": "prodstack6", "url": "https://heat-internal.ps6.canonical.com:8004/v1/623df63b80274c21bc79a0c35e68d615", "region": "prodstack6"}, {"id": "b3fc5c88ec8543a691fec75726b86967", "interface": "admin", "region_id": "prodstack6", "url": "https://heat-admin.ps6.canonical.com:8004/v1/623df63b80274c21bc79a0c35e68d615", "region": "prodstack6"}], "id": "43b926205044476b8093b18d8ce0a9e4", "type": "orchestration", "name": "heat"}, {"endpoints": [{"id": "a47569b96e5b4146a312e4673504557c", "interface": "public", "region_id": "prodstack6", "url": "https://glance.ps6.canonical.com:9292", "region": "prodstack6"}, {"id": "bba35c4ab04f4114a2a34e65568537bd", "interface": "internal", "region_id": "prodstack6", "url": "https://glance-internal.ps6.canonical.com:9292", "region": "prodstack6"}, {"id": "ef769f1117c74a62a279131486c89628", "interface": "admin", "region_id": "prodstack6", "url": "https://glance-admin.ps6.canonical.com:9292", "region": "prodstack6"}], "id": "49de724549524bd78e9cd46a4477226f", "type": "image", "name": "glance"}, {"endpoints": [{"id": "a1a41e9a1e2d42e5b6cd5380cd1e21bf", "interface": "admin", "region_id": "prodstack6", "url": "https://cinder-admin.ps6.canonical.com:8776/v3/623df63b80274c21bc79a0c35e68d615", "region": "prodstack6"}, {"id": "d2309a99724b4111827482c68a832c0c", "interface": "public", "region_id": "prodstack6", "url": "https://cinder.ps6.canonical.com:8776/v3/623df63b80274c21bc79a0c35e68d615", "region": "prodstack6"}, {"id": "f8a02e3949ff42afa772eb5e74dbef9f", "interface": "internal", "region_id": "prodstack6", "url": "https://cinder-internal.ps6.canonical.com:8776/v3/623df63b80274c21bc79a0c35e68d615", "region": "prodstack6"}], "id": "5bf6578a631349e3af4bf36d7adb18e1", "type": "volumev3", "name": "cinderv3"}, {"endpoints": [{"id": "01d84128f36444e9b01549b86bd69116", "interface": "admin", "region_id": "prodstack6", "url": "https://barbican-admin.ps6.canonical.com:9312", "region": "prodstack6"}, {"id": "0ce4a8777e0b40a88f7fc0f77e34a605", "interface": "public", "region_id": "prodstack6", "url": "https://barbican.ps6.canonical.com:9311", "region": "prodstack6"}, {"id": "f507ba49e4a7435cb330234217c92449", "interface": "internal", "region_id": "prodstack6", "url": "https://barbican-internal.ps6.canonical.com:9311", "region": "prodstack6"}], "id": "62cb1c3d9f6c45979c13516a6b3ff114", "type": "key-manager", "name": "barbican"}, {"endpoints": [{"id": "3cb6121bd8f14da8aa2fba7be823a2b4", "interface": "internal", "region_id": "prodstack6", "url": "https://neutron-internal.ps6.canonical.com:9696", "region": "prodstack6"}, {"id": "46ba11d133fe4e8f9e8f9097ba737682", "interface": "admin", "region_id": "prodstack6", "url": "https://neutron-admin.ps6.canonical.com:9696", "region": "prodstack6"}, {"id": "d872eb6aa23d40009165aa3dcdce3948", "interface": "public", "region_id": "prodstack6", "url": "https://neutron.ps6.canonical.com:9696", "region": "prodstack6"}], "id": "759cb6fdfbc146dd8b9d1ba444c4b9db", "type": "network", "name": "neutron"}, {"endpoints": [{"id": "4349d565f72446da9699269f85df5e8b", "interface": "internal", "region_id": "prodstack6", "url": "https://manila-internal.ps6.canonical.com:8786/v2/623df63b80274c21bc79a0c35e68d615", "region": "prodstack6"}, {"id": "a483dcc58f5e415e9ec739c94474e609", "interface": "public", "region_id": "prodstack6", "url": "https://manila.ps6.canonical.com:8786/v2/623df63b80274c21bc79a0c35e68d615", "region": "prodstack6"}, {"id": "c1f14236723e42878562d8dd63d5a6a0", "interface": "admin", "region_id": "prodstack6", "url": "https://manila-admin.ps6.canonical.com:8786/v2/623df63b80274c21bc79a0c35e68d615", "region": "prodstack6"}], "id": "93fc4008035946deb1f433c2dd905a5d", "type": "sharev2", "name": "manilav2"}, {"endpoints": [{"id": "0fa148793c7249c8b187b6b4ff425731", "interface": "internal", "region_id": "prodstack6", "url": "https://radosgw-internal.ps6.canonical.com:443/swift/v1/AUTH_e4b04ca58d734ed0aa29e306adad4f79/simplestreams/data", "region": "prodstack6"}, {"id": "555ade266a6b4bcc81b6e5abf607aec5", "interface": "public", "region_id": "prodstack6", "url": "https://radosgw.ps6.canonical.com:443/swift/v1/AUTH_e4b04ca58d734ed0aa29e306adad4f79/simplestreams/data", "region": "prodstack6"}, {"id": "7dad1a7b1552465686424fc014463173", "interface": "admin", "region_id": "prodstack6", "url": "https://radosgw-admin.ps6.canonical.com:443/swift/simplestreams/data", "region": "prodstack6"}], "id": "977dd359af1a4fcc91a9daf4dc33b0f3", "type": "product-streams", "name": "image-stream"}, {"endpoints": [{"id": "12d30eabcdec4831bd15273d55b1cbab", "interface": "internal", "region_id": "prodstack6", "url": "https://manila-internal.ps6.canonical.com:8786/v1/623df63b80274c21bc79a0c35e68d615", "region": "prodstack6"}, {"id": "29d35b2b483346479f1ff1a13604d50e", "interface": "admin", "region_id": "prodstack6", "url": "https://manila-admin.ps6.canonical.com:8786/v1/623df63b80274c21bc79a0c35e68d615", "region": "prodstack6"}, {"id": "4aa1422b8f5945d8aed9ba6a8d670e5c", "interface": "public", "region_id": "prodstack6", "url": "https://manila.ps6.canonical.com:8786/v1/623df63b80274c21bc79a0c35e68d615", "region": "prodstack6"}], "id": "ac5e4f28fa794cde99f1d7ffc1b664e5", "type": "share", "name": "manila"}, {"endpoints": [{"id": "c7db93d54a684d8caeae1d9e18a59118", "interface": "admin", "region_id": "prodstack6", "url": "https://nova-admin.ps6.canonical.com:8774/v2.1", "region": "prodstack6"}, {"id": "dd7a796f401b477f9f1b5bbc05747d8d", "interface": "public", "region_id": "prodstack6", "url": "https://nova.ps6.canonical.com:8774/v2.1", "region": "prodstack6"}, {"id": "e7ecb038d830462ea67b0b463af5e013", "interface": "internal", "region_id": "prodstack6", "url": "https://nova-internal.ps6.canonical.com:8774/v2.1", "region": "prodstack6"}], "id": "b4519af08e174d4a8333a2d14ac3ba3b", "type": "compute", "name": "nova"}, {"endpoints": [{"id": "02ef5b6154934ffd97d8b5b8e4d70d2a", "interface": "internal", "region_id": "prodstack6", "url": "https://radosgw-internal.ps6.canonical.com:443/swift/v1/AUTH_623df63b80274c21bc79a0c35e68d615", "region": "prodstack6"}, {"id": "2741abe526e94842a4fa801423ba1ef0", "interface": "public", "region_id": "prodstack6", "url": "https://radosgw.ps6.canonical.com:443/swift/v1/AUTH_623df63b80274c21bc79a0c35e68d615", "region": "prodstack6"}, {"id": "3742f9406c604516933d6fd8c29e0880", "interface": "admin", "region_id": "prodstack6", "url": "https://radosgw-admin.ps6.canonical.com:443/swift", "region": "prodstack6"}], "id": "c7f07a7b3b3c408c96200dfd1d1a0f6f", "type": "object-store", "name": "swift"}, {"endpoints": [{"id": "06d4ed6c160a43f2b7fa7f80ad1dc709", "interface": "internal", "region_id": "prodstack6", "url": "https://designate-internal.ps6.canonical.com:9001", "region": "prodstack6"}, {"id": "1e240624a50c4ca0aaa6ef63cbc94f1b", "interface": "admin", "region_id": "prodstack6", "url": "https://designate-admin.ps6.canonical.com:9001", "region": "prodstack6"}, {"id": "f94d7d17997a43fd9c63b34c43301c6e", "interface": "public", "region_id": "prodstack6", "url": "https://designate.ps6.canonical.com:9001", "region": "prodstack6"}], "id": "cf82013d63844fedbe96bcacb6bd1fef", "type": "dns", "name": "designate"}, {"endpoints": [{"id": "4a688340be464710bfa60bf3f88f41c4", "interface": "admin", "region_id": "prodstack6", "url": "https://gnocchi-admin.ps6.canonical.com:8041", "region": "prodstack6"}, {"id": "a5a95506c96d4716adb4efc3ac9051be", "interface": "public", "region_id": "prodstack6", "url": "https://gnocchi.ps6.canonical.com:8041", "region": "prodstack6"}, {"id": "eebc17a086834f8fa8bb6b35c8061a8c", "interface": "internal", "region_id": "prodstack6", "url": "https://gnocchi-internal.ps6.canonical.com:8041", "region": "prodstack6"}], "id": "d10589e854a446a5b852593f33f170a7", "type": "metric", "name": "gnocchi"}, {"endpoints": [{"id": "08f66df28d0f47f3bec12f29e06d85ac", "interface": "admin", "region_id": "prodstack6", "url": "https://keystone-admin.ps6.canonical.com:35357/v3", "region": "prodstack6"}, {"id": "46d270b45ceb42db902f4d241afa6a70", "interface": "public", "region_id": "prodstack6", "url": "https://keystone.ps6.canonical.com:5000/v3", "region": "prodstack6"}, {"id": "a4addee11d9349cfa46ec6660dbad947", "interface": "internal", "region_id": "prodstack6", "url": "https://keystone-internal.ps6.canonical.com:5000/v3", "region": "prodstack6"}], "id": "deb38a775a9b4e87a8de9e3eed779882", "type": "identity", "name": "keystone"}, {"endpoints": [{"id": "18b4af5f40664babb94e884c6a53ccf3", "interface": "admin", "region_id": "prodstack6", "url": "https://octavia-admin.ps6.canonical.com:9876", "region": "prodstack6"}, {"id": "2b6f7ba7f9944ee1aebd6dccc5223b2d", "interface": "internal", "region_id": "prodstack6", "url": "https://octavia-internal.ps6.canonical.com:9876", "region": "prodstack6"}, {"id": "5e3012e9c79e4890be4d964b6208f5c6", "interface": "public", "region_id": "prodstack6", "url": "https://octavia.ps6.canonical.com:9876", "region": "prodstack6"}], "id": "e00337be20d54948b66a1c3109b885c6", "type": "load-balancer", "name": "octavia"}, {"endpoints": [{"id": "2d2942b35f3041389ad810f679d02f22", "interface": "public", "region_id": "prodstack6", "url": "https://placement.ps6.canonical.com:8778", "region": "prodstack6"}, {"id": "2e3beaac7ac14284b72e2592820ad725", "interface": "admin", "region_id": "prodstack6", "url": "https://placement-admin.ps6.canonical.com:8778", "region": "prodstack6"}, {"id": "91060f6df9ae444f81808adf40540d94", "interface": "internal", "region_id": "prodstack6", "url": "https://placement-internal.ps6.canonical.com:8778", "region": "prodstack6"}], "id": "edc6e37f154f4c0ab3dd4d52b82bf873", "type": "placement", "name": "placement"}]}}
993s REQ: curl -g -i -X GET https://nova.ps6.canonical.com:8774/v2.1 -H "Accept: application/json" -H "User-Agent: python-novaclient" -H "X-Auth-Token: {SHA256}ae12996c0c8a529621d9499db83f8cdc72fd762aef26fce43be0170f78c896fc"
993s DEBUG (session:517) REQ: curl -g -i -X GET https://nova.ps6.canonical.com:8774/v2.1 -H "Accept: application/json" -H "User-Agent: python-novaclient" -H "X-Auth-Token: {SHA256}ae12996c0c8a529621d9499db83f8cdc72fd762aef26fce43be0170f78c896fc"
993s DEBUG (connectionpool:962) Starting new HTTPS connection (1): nova.ps6.canonical.com:8774
993s DEBUG (connectionpool:429) https://nova.ps6.canonical.com:8774 "GET /v2.1 HTTP/1.1" 302 0
993s RESP: [302] Connection: Keep-Alive Content-Length: 0 Content-Type: text/plain; charset=utf8 Date: Wed, 19 Feb 2025 17:40:36 GMT Keep-Alive: timeout=75, max=1000 Location: https://nova.ps6.canonical.com:8774/v2.1/ Server: Apache/2.4.52 (Ubuntu) x-compute-request-id: req-f9d37194-9836-4acb-bc20-50391bd410f5 x-openstack-request-id: req-f9d37194-9836-4acb-bc20-50391bd410f5
993s DEBUG (session:548) RESP: [302] Connection: Keep-Alive Content-Length: 0 Content-Type: text/plain; charset=utf8 Date: Wed, 19 Feb 2025 17:40:36 GMT Keep-Alive: timeout=75, max=1000 Location: https://nova.ps6.canonical.com:8774/v2.1/ Server: Apache/2.4.52 (Ubuntu) x-compute-request-id: req-f9d37194-9836-4acb-bc20-50391bd410f5 x-openstack-request-id: req-f9d37194-9836-4acb-bc20-50391bd410f5
993s RESP BODY: Omitted, Content-Type is set to text/plain; charset=utf8. Only application/json responses have their bodies logged.
993s DEBUG (session:580) RESP BODY: Omitted, Content-Type is set to text/plain; charset=utf8. Only application/json responses have their bodies logged.
993s DEBUG (connectionpool:429) https://nova.ps6.canonical.com:8774 "GET /v2.1/ HTTP/1.1" 200 397
993s RESP: [200] Connection: Keep-Alive Content-Length: 397 Content-Type: application/json Date: Wed, 19 Feb 2025 17:40:36 GMT Keep-Alive: timeout=75, max=999 OpenStack-API-Version: compute 2.1 Server: Apache/2.4.52 (Ubuntu) Vary: OpenStack-API-Version,X-OpenStack-Nova-API-Version X-OpenStack-Nova-API-Version: 2.1 x-compute-request-id: req-120f2a58-f18f-4703-8b1d-4d66dda2b73c x-openstack-request-id: req-120f2a58-f18f-4703-8b1d-4d66dda2b73c
993s DEBUG (session:548) RESP: [200] Connection: Keep-Alive Content-Length: 397 Content-Type: application/json Date: Wed, 19 Feb 2025 17:40:36 GMT Keep-Alive: timeout=75, max=999 OpenStack-API-Version: compute 2.1 Server: Apache/2.4.52 (Ubuntu) Vary: OpenStack-API-Version,X-OpenStack-Nova-API-Version X-OpenStack-Nova-API-Version: 2.1 x-compute-request-id: req-120f2a58-f18f-4703-8b1d-4d66dda2b73c x-openstack-request-id: req-120f2a58-f18f-4703-8b1d-4d66dda2b73c
993s RESP BODY: {"version": {"id": "v2.1", "status": "CURRENT", "version": "2.90", "min_version": "2.1", "updated": "2013-07-23T11:33:21Z", "links": [{"rel": "self", "href": "https://nova.ps6.canonical.com:8774/v2.1/"}, {"rel": "describedby", "type": "text/html", "href": "http://docs.openstack.org/"}], "media-types": [{"base": "application/json", "type": "application/vnd.openstack.compute+json;version=2.1"}]}}
993s DEBUG (session:580) RESP BODY: {"version": {"id": "v2.1", "status": "CURRENT", "version": "2.90", "min_version": "2.1", "updated": "2013-07-23T11:33:21Z", "links": [{"rel": "self", "href": "https://nova.ps6.canonical.com:8774/v2.1/"}, {"rel": "describedby", "type": "text/html", "href": "http://docs.openstack.org/"}], "media-types": [{"base": "application/json", "type": "application/vnd.openstack.compute+json;version=2.1"}]}}
993s GET call to compute for https://nova.ps6.canonical.com:8774/v2.1/ used request id req-120f2a58-f18f-4703-8b1d-4d66dda2b73c
993s DEBUG (session:936) GET call to compute for https://nova.ps6.canonical.com:8774/v2.1/ used request id req-120f2a58-f18f-4703-8b1d-4d66dda2b73c
993s DEBUG (extension:189) found extension EntryPoint.parse('v1password = swiftclient.authv1:PasswordLoader')
993s DEBUG (extension:189) found extension EntryPoint.parse('noauth = cinderclient.contrib.noauth:CinderNoAuthLoader')
993s DEBUG (extension:189) found extension EntryPoint.parse('admin_token = keystoneauth1.loading._plugins.admin_token:AdminToken')
993s DEBUG (extension:189) found extension EntryPoint.parse('none = keystoneauth1.loading._plugins.noauth:NoAuth')
993s DEBUG (extension:189) found extension EntryPoint.parse('password = keystoneauth1.loading._plugins.identity.generic:Password')
993s DEBUG (extension:189) found extension EntryPoint.parse('token = keystoneauth1.loading._plugins.identity.generic:Token')
993s DEBUG (extension:189) found extension EntryPoint.parse('v2password = keystoneauth1.loading._plugins.identity.v2:Password')
993s DEBUG (extension:189) found extension EntryPoint.parse('v2token = keystoneauth1.loading._plugins.identity.v2:Token')
993s DEBUG (extension:189) found extension EntryPoint.parse('v3adfspassword = keystoneauth1.extras._saml2._loading:ADFSPassword')
993s DEBUG (extension:189) found extension EntryPoint.parse('v3applicationcredential = keystoneauth1.loading._plugins.identity.v3:ApplicationCredential')
993s DEBUG (extension:189) found extension EntryPoint.parse('v3fedkerb = keystoneauth1.extras.kerberos._loading:MappedKerberos')
993s DEBUG (extension:189) found extension EntryPoint.parse('v3kerberos = keystoneauth1.extras.kerberos._loading:Kerberos')
993s DEBUG (extension:189) found extension EntryPoint.parse('v3multifactor = keystoneauth1.loading._plugins.identity.v3:MultiFactor')
993s DEBUG (extension:189) found extension EntryPoint.parse('v3oauth1 = keystoneauth1.extras.oauth1._loading:V3OAuth1')
993s DEBUG (extension:189) found extension EntryPoint.parse('v3oidcaccesstoken = keystoneauth1.loading._plugins.identity.v3:OpenIDConnectAccessToken')
993s DEBUG (extension:189) found extension EntryPoint.parse('v3oidcauthcode = keystoneauth1.loading._plugins.identity.v3:OpenIDConnectAuthorizationCode')
993s DEBUG (extension:189) found extension EntryPoint.parse('v3oidcclientcredentials = keystoneauth1.loading._plugins.identity.v3:OpenIDConnectClientCredentials')
993s DEBUG (extension:189) found extension EntryPoint.parse('v3oidcpassword = keystoneauth1.loading._plugins.identity.v3:OpenIDConnectPassword')
993s DEBUG (extension:189) found extension EntryPoint.parse('v3password = keystoneauth1.loading._plugins.identity.v3:Password')
993s DEBUG (extension:189) found extension EntryPoint.parse('v3samlpassword = keystoneauth1.extras._saml2._loading:Saml2Password')
993s DEBUG (extension:189) found extension EntryPoint.parse('v3token = keystoneauth1.loading._plugins.identity.v3:Token')
993s DEBUG (extension:189) found extension EntryPoint.parse('v3tokenlessauth = keystoneauth1.loading._plugins.identity.v3:TokenlessAuth')
993s DEBUG (extension:189) found extension EntryPoint.parse('v3totp = keystoneauth1.loading._plugins.identity.v3:TOTP')
993s DEBUG (session:517) REQ: curl -g -i -X GET https://glance.ps6.canonical.com:9292/v2/images/9318aa34-3d3c-43c5-86d2-aaf9390f2f5d -H "Accept: application/json" -H "OpenStack-API-Version: compute 2.87" -H "User-Agent: python-novaclient" -H "X-Auth-Token: {SHA256}ae12996c0c8a529621d9499db83f8cdc72fd762aef26fce43be0170f78c896fc" -H "X-OpenStack-Nova-API-Version: 2.87"
993s DEBUG (connectionpool:962) Starting new HTTPS connection (1): glance.ps6.canonical.com:9292
993s DEBUG (connectionpool:429) https://glance.ps6.canonical.com:9292 "GET /v2/images/9318aa34-3d3c-43c5-86d2-aaf9390f2f5d HTTP/1.1" 200 2294
993s DEBUG (session:548) RESP: [200] Connection: Keep-Alive Content-Length: 2294 Content-Type: application/json Date: Wed, 19 Feb 2025 17:40:37 GMT Keep-Alive: timeout=75, max=1000 Server: Apache/2.4.52 (Ubuntu) X-Openstack-Request-Id: req-73c71822-169d-4f10-8489-b35e341af067
993s DEBUG (session:580) RESP BODY: {"architecture": "ppc64le", "base_image_ref": "75c910fb-86d3-481a-a4b6-c4670f38d780", "boot_roles": "load-balancer_member,member,reader", "content_id": "auto.sync", "hw_cdrom_bus": "scsi", "hw_disk_bus": "virtio", "hw_machine_type": "pseries", "hw_video_model": "vga", "hw_vif_model": "virtio", "image_location": "snapshot", "image_state": "available", "image_type": "snapshot", "instance_uuid": "3a84a59e-0d61-4568-b3ee-f83c37d7fe47", "item_name": "disk1.img", "os_distro": "ubuntu", "os_version": "25.04", "owner_id": "623df63b80274c21bc79a0c35e68d615", "owner_project_name": "prod-proposed-migration-ppc64el_project", "owner_user_name": "prod-proposed-migration-ppc64el", "product_name": "com.ubuntu.cloud.daily:server:25.04:ppc64el", "simplestreams_metadata": "{\"aliases\": \"25.04,p,plucky,devel\", \"arch\": \"ppc64el\", \"ftype\": \"disk1.img\", \"label\": \"daily\", \"md5\": \"75cf4ebffa6ce75c5396564290b6a8f7\", \"os\": \"ubuntu\", \"pubname\": \"ubuntu-plucky-daily-ppc64el-server-20250113\", \"release\": \"plucky\", \"release_codename\": \"P", "source_content_id": "com.ubuntu.cloud:daily:download", "user_id": "c871debdeffd4cb8b69ce618fc4aa361", "version_name": "20250113", "name": "adt/ubuntu-plucky-ppc64el-server-20250218.img", "disk_format": "qcow2", "container_format": "bare", "visibility": "private", "size": 3164667904, "virtual_size": 21474836480, "status": "active", "checksum": "c4bfbc82e14f182edcb5e530631c7ad5", "protected": false, "min_ram": 0, "min_disk": 20, "owner": "623df63b80274c21bc79a0c35e68d615", "os_hidden": false, "os_hash_algo": "sha512", "os_hash_value": "29879c317cbd38f9b5c9009de4e28f33db639542d62b39eab3525155ea8ea3f7195071808aa55be69d4e20580f260523df78c8bf0ee9bcbe80682097a7122aff", "id": "9318aa34-3d3c-43c5-86d2-aaf9390f2f5d", "created_at": "2025-02-18T18:04:37Z", "updated_at": "2025-02-18T18:05:16Z", "locations": [{"url": "rbd://eea9d068-c18c-11ed-8dc0-013aacb71b80/glance/9318aa34-3d3c-43c5-86d2-aaf9390f2f5d/snap", "metadata": {"store": "ceph"}}], "direct_url": "rbd://eea9d068-c18c-11ed-8dc0-013aacb71b80/glance/9318aa34-3d3c-43c5-86d2-aaf9390f2f5d/snap", "tags": [], "self": "/v2/images/9318aa34-3d3c-43c5-86d2-aaf9390f2f5d", "file": "/v2/images/9318aa34-3d3c-43c5-86d2-aaf9390f2f5d/file", "schema": "/v2/schemas/image", "stores": "ceph"}
993s DEBUG (session:936) GET call to image for https://glance.ps6.canonical.com:9292/v2/images/9318aa34-3d3c-43c5-86d2-aaf9390f2f5d used request id req-73c71822-169d-4f10-8489-b35e341af067
993s DEBUG (session:517) REQ: curl -g -i -X GET https://nova.ps6.canonical.com:8774/v2.1/flavors/autopkgtest-ppc64el -H "Accept: application/json" -H "OpenStack-API-Version: compute 2.87" -H "User-Agent: python-novaclient" -H "X-Auth-Token: {SHA256}ae12996c0c8a529621d9499db83f8cdc72fd762aef26fce43be0170f78c896fc" -H "X-OpenStack-Nova-API-Version: 2.87"
993s DEBUG (connectionpool:429) https://nova.ps6.canonical.com:8774 "GET /v2.1/flavors/autopkgtest-ppc64el HTTP/1.1" 404 92
993s DEBUG (session:548) RESP: [404] Connection: Keep-Alive Content-Length: 92 Content-Type: application/json; charset=UTF-8 Date: Wed, 19 Feb 2025 17:40:37 GMT Keep-Alive: timeout=75, max=998 OpenStack-API-Version: compute 2.87 Server: Apache/2.4.52 (Ubuntu) Vary: OpenStack-API-Version,X-OpenStack-Nova-API-Version X-OpenStack-Nova-API-Version: 2.87 x-compute-request-id: req-fd8101a0-8439-4ef7-850f-7810cfac4087 x-openstack-request-id: req-fd8101a0-8439-4ef7-850f-7810cfac4087
993s DEBUG (session:580) RESP BODY: {"itemNotFound": {"code": 404, "message": "Flavor autopkgtest-ppc64el could not be found."}}
993s DEBUG (session:936) GET call to compute for https://nova.ps6.canonical.com:8774/v2.1/flavors/autopkgtest-ppc64el used request id req-fd8101a0-8439-4ef7-850f-7810cfac4087
993s DEBUG (session:517) REQ: curl -g -i -X GET https://nova.ps6.canonical.com:8774/v2.1/flavors?is_public=None -H "Accept: application/json" -H "OpenStack-API-Version: compute 2.87" -H "User-Agent: python-novaclient" -H "X-Auth-Token: {SHA256}ae12996c0c8a529621d9499db83f8cdc72fd762aef26fce43be0170f78c896fc" -H "X-OpenStack-Nova-API-Version: 2.87"
993s DEBUG (connectionpool:429) https://nova.ps6.canonical.com:8774 "GET /v2.1/flavors?is_public=None HTTP/1.1" 200 39839
993s DEBUG (session:548) RESP: [200] Connection: Keep-Alive Content-Length: 39839 Content-Type: application/json Date: Wed, 19 Feb 2025 17:40:37 GMT Keep-Alive: timeout=75, max=997 OpenStack-API-Version: compute 2.87 Server: Apache/2.4.52 (Ubuntu) Vary: OpenStack-API-Version,X-OpenStack-Nova-API-Version X-OpenStack-Nova-API-Version: 2.87 x-compute-request-id: req-0583e56f-4673-4ea5-85bc-716cd31ac299 x-openstack-request-id: req-0583e56f-4673-4ea5-85bc-716cd31ac299
993s DEBUG (session:580) RESP BODY: {"flavors": [{"id": "05338e57-e2ba-4813-9a8a-2f2af73f8ab2", "name": "builder-ppc64el-cpu2-ram4-disk100", "links": [{"rel": "self", "href": "https://nova.ps6.canonical.com:8774/v2.1/flavors/05338e57-e2ba-4813-9a8a-2f2af73f8ab2"}, {"rel": "bookmark", "href": "https://nova.ps6.canonical.com:8774/flavors/05338e57-e2ba-4813-9a8a-2f2af73f8ab2"}], "description": null}, {"id": "08090b4b-98a9-4c15-8ad4-cc6711700879", "name": "builder-ppc64el-cpu8-ram64-disk20", "links": [{"rel": "self", "href": "https://nova.ps6.canonical.com:8774/v2.1/flavors/08090b4b-98a9-4c15-8ad4-cc6711700879"}, {"rel": "bookmark", "href": "https://nova.ps6.canonical.com:8774/flavors/08090b4b-98a9-4c15-8ad4-cc6711700879"}], "description": null}, {"id": "0825b8b1-2b9c-42bf-b3e6-e827c22d8df5", "name": "builder-ppc64el-cpu8-ram4-disk100", "links": [{"rel": "self", "href": "https://nova.ps6.canonical.com:8774/v2.1/flavors/0825b8b1-2b9c-42bf-b3e6-e827c22d8df5"}, {"rel": "bookmark", "href": "https://nova.ps6.canonical.com:8774/flavors/0825b8b1-2b9c-42bf-b3e6-e827c22d8df5"}], "description": null}, {"id": "0b06db45-151e-44b2-b0f5-f069ad7fa1cb", "name": "builder-ppc64el-cpu2-ram12-disk20", "links": [{"rel": "self", "href": "https://nova.ps6.canonical.com:8774/v2.1/flavors/0b06db45-151e-44b2-b0f5-f069ad7fa1cb"}, {"rel": "bookmark", "href": "https://nova.ps6.canonical.com:8774/flavors/0b06db45-151e-44b2-b0f5-f069ad7fa1cb"}], "description": null}, {"id": "0dbf127e-3101-4f05-9d37-15ad6d2a45c1", "name": "builder-ppc64el-cpu2-ram16-disk20", "links": [{"rel": "self", "href": "https://nova.ps6.canonical.com:8774/v2.1/flavors/0dbf127e-3101-4f05-9d37-15ad6d2a45c1"}, {"rel": "bookmark", "href": "https://nova.ps6.canonical.com:8774/flavors/0dbf127e-3101-4f05-9d37-15ad6d2a45c1"}], "description": null}, {"id": "102d0b57-e8d2-46c6-9be4-f452119a0280", "name": "autopkgtest-ppc64el", "links": [{"rel": "self", "href": "https://nova.ps6.canonical.com:8774/v2.1/flavors/102d0b57-e8d2-46c6-9be4-f452119a0280"}, {"rel": "bookmark", "href": "https://nova.ps6.canonical.com:8774/flavors/102d0b57-e8d2-46c6-9be4-f452119a0280"}], "description": null}, {"id": "1219f5f0-83f3-4d33-a3bb-1a85c6303159", "name": "builder-ppc64el-cpu128-ram64-disk50", "links": [{"rel": "self", "href": "https://nova.ps6.canonical.com:8774/v2.1/flavors/1219f5f0-83f3-4d33-a3bb-1a85c6303159"}, {"rel": "bookmark", "href": "https://nova.ps6.canonical.com:8774/flavors/1219f5f0-83f3-4d33-a3bb-1a85c6303159"}], "description": null}, {"id": "1359c5a4-ee60-4855-9bcc-defd3bff7121", "name": "builder-ppc64el-cpu8-ram8-disk50", "links": [{"rel": "self", "href": "https://nova.ps6.canonical.com:8774/v2.1/flavors/1359c5a4-ee60-4855-9bcc-defd3bff7121"}, {"rel": "bookmark", "href": "https://nova.ps6.canonical.com:8774/flavors/1359c5a4-ee60-4855-9bcc-defd3bff7121"}], "description": null}, {"id": "161f21bc-11f7-4ec9-a322-04fc3e0d2a68", "name": "builder-ppc64el-cpu2-ram55-disk20", "links": [{"rel": "self", "href": "https://nova.ps6.canonical.com:8774/v2.1/flavors/161f21bc-11f7-4ec9-a322-04fc3e0d2a68"}, {"rel": "bookmark", "href": "https://nova.ps6.canonical.com:8774/flavors/161f21bc-11f7-4ec9-a322-04fc3e0d2a68"}], "description": null}, {"id": "166070cd-7110-473e-a6a2-5e25aa9eeefd", "name": "builder-ppc64el-cpu4-ram64-disk100", "links": [{"rel": "self", "href": "https://nova.ps6.canonical.com:8774/v2.1/flavors/166070cd-7110-473e-a6a2-5e25aa9eeefd"}, {"rel": "bookmark", "href": "https://nova.ps6.canonical.com:8774/flavors/166070cd-7110-473e-a6a2-5e25aa9eeefd"}], "description": null}, {"id": "16a0a259-4627-4fbd-bb9d-a3e69346467c", "name": "builder-ppc64el-cpu8-ram64-disk50", "links": [{"rel": "self", "href": "https://nova.ps6.canonical.com:8774/v2.1/flavors/16a0a259-4627-4fbd-bb9d-a3e69346467c"}, {"rel": "bookmark", "href": "https://nova.ps6.canonical.com:8774/flavors/16a0a259-4627-4fbd-bb9d-a3e69346467c"}], "description": null}, {"id": "1c59e50a-1a67-4691-8f2c-6954cb0f83ba", "name": "builder-ppc64el-cpu4-ram128-disk20", "links": [{"rel": "self", "href": "https://nova.ps6.canonical.com:8774/v2.1/flavors/1c59e50a-1a67-4691-8f2c-6954cb0f83ba"}, {"rel": "bookmark", "href": "https://nova.ps6.canonical.com:8774/flavors/1c59e50a-1a67-4691-8f2c-6954cb0f83ba"}], "description": null}, {"id": "1c94efa8-905a-4bff-8485-0aaf9ac47fe7", "name": "builder-ppc64el-cpu4-ram16-disk50", "links": [{"rel": "self", "href": "https://nova.ps6.canonical.com:8774/v2.1/flavors/1c94efa8-905a-4bff-8485-0aaf9ac47fe7"}, {"rel": "bookmark", "href": "https://nova.ps6.canonical.com:8774/flavors/1c94efa8-905a-4bff-8485-0aaf9ac47fe7"}], "description": null}, {"id": "213c954d-26ed-4c86-9592-66384bc22c82", "name": "builder-ppc64el-cpu4-ram16-disk100", "links": [{"rel": "self", "href": "https://nova.ps6.canonical.com:8774/v2.1/flavors/213c954d-26ed-4c86-9592-66384bc22c82"}, {"rel": "bookmark", "href": 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"https://nova.ps6.canonical.com:8774/flavors/e628d527-f077-426d-9380-5eea778aabc2"}], "description": null}, {"id": "e752e039-cbe4-4a16-8197-de87ba42b83e", "name": "builder-ppc64el-cpu64-ram256-disk100", "links": [{"rel": "self", "href": "https://nova.ps6.canonical.com:8774/v2.1/flavors/e752e039-cbe4-4a16-8197-de87ba42b83e"}, {"rel": "bookmark", "href": "https://nova.ps6.canonical.com:8774/flavors/e752e039-cbe4-4a16-8197-de87ba42b83e"}], "description": null}, {"id": "e7f811c8-a60c-45c6-86c8-8e4b025751df", "name": "builder-ppc64el-cpu4-ram16-disk40", "links": [{"rel": "self", "href": "https://nova.ps6.canonical.com:8774/v2.1/flavors/e7f811c8-a60c-45c6-86c8-8e4b025751df"}, {"rel": "bookmark", "href": "https://nova.ps6.canonical.com:8774/flavors/e7f811c8-a60c-45c6-86c8-8e4b025751df"}], "description": null}, {"id": "eb80d7e2-b6e1-42a5-b80d-3dad861f6989", "name": "builder-ppc64el-cpu16-ram4-disk20", "links": [{"rel": "self", "href": "https://nova.ps6.canonical.com:8774/v2.1/flavors/eb80d7e2-b6e1-42a5-b80d-3dad861f6989"}, {"rel": "bookmark", "href": "https://nova.ps6.canonical.com:8774/flavors/eb80d7e2-b6e1-42a5-b80d-3dad861f6989"}], "description": null}, {"id": "ed127e2b-02b8-4e61-bf10-0c89b90928e6", "name": "builder-ppc64el-cpu64-ram128-disk50", "links": [{"rel": "self", "href": "https://nova.ps6.canonical.com:8774/v2.1/flavors/ed127e2b-02b8-4e61-bf10-0c89b90928e6"}, {"rel": "bookmark", "href": "https://nova.ps6.canonical.com:8774/flavors/ed127e2b-02b8-4e61-bf10-0c89b90928e6"}], "description": null}, {"id": "ef7301a7-71f4-48ac-b387-23251f4060e1", "name": "builder-ppc64el-cpu16-ram8-disk100", "links": [{"rel": "self", "href": "https://nova.ps6.canonical.com:8774/v2.1/flavors/ef7301a7-71f4-48ac-b387-23251f4060e1"}, {"rel": "bookmark", "href": "https://nova.ps6.canonical.com:8774/flavors/ef7301a7-71f4-48ac-b387-23251f4060e1"}], "description": null}, {"id": "f0f1af4d-f230-40c1-b789-c94e02a68daa", "name": "builder-ppc64el-cpu16-ram8-disk20", "links": [{"rel": "self", "href": "https://nova.ps6.canonical.com:8774/v2.1/flavors/f0f1af4d-f230-40c1-b789-c94e02a68daa"}, {"rel": "bookmark", "href": "https://nova.ps6.canonical.com:8774/flavors/f0f1af4d-f230-40c1-b789-c94e02a68daa"}], "description": null}, {"id": "f40b2dbc-5d69-40b0-a9fc-71c32de93ca3", "name": "autopkgtest-big-ppc64el", "links": [{"rel": "self", "href": "https://nova.ps6.canonical.com:8774/v2.1/flavors/f40b2dbc-5d69-40b0-a9fc-71c32de93ca3"}, {"rel": "bookmark", "href": "https://nova.ps6.canonical.com:8774/flavors/f40b2dbc-5d69-40b0-a9fc-71c32de93ca3"}], "description": null}, {"id": "f6aae414-e26b-4692-95d4-d851b6993c2a", "name": "builder-ppc64el-cpu2-ram8-disk50", "links": [{"rel": "self", "href": "https://nova.ps6.canonical.com:8774/v2.1/flavors/f6aae414-e26b-4692-95d4-d851b6993c2a"}, {"rel": "bookmark", "href": "https://nova.ps6.canonical.com:8774/flavors/f6aae414-e26b-4692-95d4-d851b6993c2a"}], "description": null}, {"id": "f91b245b-ad92-47f6-8861-d1e070fcc19c", "name": "builder-ppc64el-cpu2-ram64-disk100", "links": [{"rel": "self", "href": "https://nova.ps6.canonical.com:8774/v2.1/flavors/f91b245b-ad92-47f6-8861-d1e070fcc19c"}, {"rel": "bookmark", "href": "https://nova.ps6.canonical.com:8774/flavors/f91b245b-ad92-47f6-8861-d1e070fcc19c"}], "description": null}, {"id": "fa3bbba4-5e72-4ca3-9661-ccf45947bbf5", "name": "builder-ppc64el-cpu16-ram4-disk100", "links": [{"rel": "self", "href": "https://nova.ps6.canonical.com:8774/v2.1/flavors/fa3bbba4-5e72-4ca3-9661-ccf45947bbf5"}, {"rel": "bookmark", "href": "https://nova.ps6.canonical.com:8774/flavors/fa3bbba4-5e72-4ca3-9661-ccf45947bbf5"}], "description": null}, {"id": "ff4cf1ee-6e00-49b7-9d11-fafa69b910df", "name": "builder-ppc64el-cpu8-ram32-disk40", "links": [{"rel": "self", "href": "https://nova.ps6.canonical.com:8774/v2.1/flavors/ff4cf1ee-6e00-49b7-9d11-fafa69b910df"}, {"rel": "bookmark", "href": "https://nova.ps6.canonical.com:8774/flavors/ff4cf1ee-6e00-49b7-9d11-fafa69b910df"}], "description": null}]}
993s DEBUG (session:936) GET call to compute for https://nova.ps6.canonical.com:8774/v2.1/flavors?is_public=None used request id req-0583e56f-4673-4ea5-85bc-716cd31ac299
993s DEBUG (session:517) REQ: curl -g -i -X GET https://nova.ps6.canonical.com:8774/v2.1/flavors/102d0b57-e8d2-46c6-9be4-f452119a0280 -H "Accept: application/json" -H "OpenStack-API-Version: compute 2.87" -H "User-Agent: python-novaclient" -H "X-Auth-Token: {SHA256}ae12996c0c8a529621d9499db83f8cdc72fd762aef26fce43be0170f78c896fc" -H "X-OpenStack-Nova-API-Version: 2.87"
993s DEBUG (connectionpool:429) https://nova.ps6.canonical.com:8774 "GET /v2.1/flavors/102d0b57-e8d2-46c6-9be4-f452119a0280 HTTP/1.1" 200 623
993s DEBUG (session:548) RESP: [200] Connection: Keep-Alive Content-Length: 623 Content-Type: application/json Date: Wed, 19 Feb 2025 17:40:37 GMT Keep-Alive: timeout=75, max=996 OpenStack-API-Version: compute 2.87 Server: Apache/2.4.52 (Ubuntu) Vary: OpenStack-API-Version,X-OpenStack-Nova-API-Version X-OpenStack-Nova-API-Version: 2.87 x-compute-request-id: req-49945742-9f65-437f-9626-ecf810aa829a x-openstack-request-id: req-49945742-9f65-437f-9626-ecf810aa829a
993s DEBUG (session:580) RESP BODY: {"flavor": {"id": "102d0b57-e8d2-46c6-9be4-f452119a0280", "name": "autopkgtest-ppc64el", "ram": 4096, "disk": 20, "swap": 0, "OS-FLV-EXT-DATA:ephemeral": 0, "OS-FLV-DISABLED:disabled": false, "vcpus": 2, "os-flavor-access:is_public": false, "rxtx_factor": 1.0, "links": [{"rel": "self", "href": "https://nova.ps6.canonical.com:8774/v2.1/flavors/102d0b57-e8d2-46c6-9be4-f452119a0280"}, {"rel": "bookmark", "href": "https://nova.ps6.canonical.com:8774/flavors/102d0b57-e8d2-46c6-9be4-f452119a0280"}], "description": null, "extra_specs": {"aggregate_instance_extra_specs:commit": "builder-ppc64el", "hw_rng:allowed": "True"}}}
993s DEBUG (session:936) GET call to compute for https://nova.ps6.canonical.com:8774/v2.1/flavors/102d0b57-e8d2-46c6-9be4-f452119a0280 used request id req-49945742-9f65-437f-9626-ecf810aa829a
993s DEBUG (session:517) REQ: curl -g -i -X POST https://nova.ps6.canonical.com:8774/v2.1/servers -H "Accept: application/json" -H "Content-Type: application/json" -H "OpenStack-API-Version: compute 2.87" -H "User-Agent: python-novaclient" -H "X-Auth-Token: {SHA256}ae12996c0c8a529621d9499db83f8cdc72fd762aef26fce43be0170f78c896fc" -H "X-OpenStack-Nova-API-Version: 2.87" -d '{"server": {"name": "adt-plucky-ppc64el-python-biopython-20250219-172152-juju-7f2275-prod-proposed-migration-environment-20-4f0860bc-69c2-46ab-b233-4cff83fbada6", "imageRef": "9318aa34-3d3c-43c5-86d2-aaf9390f2f5d", "flavorRef": "102d0b57-e8d2-46c6-9be4-f452119a0280", "user_data": "I2Nsb3VkLWNvbmZpZwpob3N0bmFtZTogYXV0b3BrZ3Rlc3QKZnFkbjogYXV0b3BrZ3Rlc3QubG9jYWwKbWFuYWdlX2V0Y19ob3N0czogdHJ1ZQphcHRfdXBkYXRlOiB0cnVlCmFwdF91cGdyYWRlOiBmYWxzZQphcHRfbWlycm9yOiBodHRwOi8vZnRwbWFzdGVyLmludGVybmFsL3VidW50dS8KCnJ1bmNtZDoKIC0gZWNobyAnQWNxdWlyZTo6TGFuZ3VhZ2VzICJub25lIjsnID4gL2V0Yy9hcHQvYXB0LmNvbmYuZC85MG5vbGFuZ3VhZ2VzCiAtIGVjaG8gJ2ZvcmNlLXVuc2FmZS1pbycgPiAvZXRjL2Rwa2cvZHBrZy5jZmcuZC9hdXRvcGtndGVzdAogLSBwcmludGYgJ1xuVEVSTT1saW51eFxuJ2h0dHBfcHJveHk9aHR0cDovL3NxdWlkLmludGVybmFsOjMxMjgnXG4naHR0cHNfcHJveHk9aHR0cDovL3NxdWlkLmludGVybmFsOjMxMjgnXG4nbm9fcHJveHk9MTI3LjAuMC4xLDEyNy4wLjEuMSxsb2dpbi51YnVudHUuY29tLGxvY2FsaG9zdCxsb2NhbGRvbWFpbixub3ZhbG9jYWwsaW50ZXJuYWwsYXJjaGl2ZS51YnVudHUuY29tLHBvcnRzLnVidW50dS5jb20sc2VjdXJpdHkudWJ1bnR1LmNvbSxkZGVicy51YnVudHUuY29tLGNoYW5nZWxvZ3MudWJ1bnR1LmNvbSxrZXlzZXJ2ZXIudWJ1bnR1LmNvbSxsYXVuY2hwYWRsaWJyYXJpYW4ubmV0LGxhdW5jaHBhZGNvbnRlbnQubmV0LGxhdW5jaHBhZC5uZXQsMTAuMjQuMC4wLzI0LGtleXN0b25lLnBzNS5jYW5vbmljYWwuY29tLG9iamVjdHN0b3JhZ2UucHJvZHN0YWNrNS5jYW5vbmljYWwuY29tLHJhZG9zZ3cucHM1LmNhbm9uaWNhbC5jb20nXG4nID4+IC9ldGMvZW52aXJvbm1lbnQKIC0gc2VkIC1pIC1yICcvXjEyNy4wLjEuMS8gcy9hdXRvcGtndGVzdC1bXiBdK1wuL2F1dG9wa2d0ZXN0XC4vJyAvZXRjL2hvc3RzCg==", "key_name": "testbed-juju-7f2275-prod-proposed-migration-environment-20", "min_count": 1, "max_count": 1, "security_groups": [{"name": "autopkgtest-juju-7f2275-prod-proposed-migration-environment-20@bos03-ppc64el-18.secgroup"}], "networks": [{"uuid": "3083d638-5564-4f5c-97ef-09f045123d20"}]}}'
993s DEBUG (connectionpool:429) https://nova.ps6.canonical.com:8774 "POST /v2.1/servers HTTP/1.1" 202 479
993s DEBUG (session:548) RESP: [202] Connection: Keep-Alive Content-Length: 479 Content-Type: application/json Date: Wed, 19 Feb 2025 17:40:37 GMT Keep-Alive: timeout=75, max=995 OpenStack-API-Version: compute 2.87 Server: Apache/2.4.52 (Ubuntu) Vary: OpenStack-API-Version,X-OpenStack-Nova-API-Version X-OpenStack-Nova-API-Version: 2.87 location: https://nova.ps6.canonical.com:8774/v2.1/servers/3b539daa-465a-43ae-953a-4d25eda684bd x-compute-request-id: req-2b80a665-808c-4981-8dc1-21e9b39e9d2b x-openstack-request-id: req-2b80a665-808c-4981-8dc1-21e9b39e9d2b
993s DEBUG (session:580) RESP BODY: {"server": {"id": "3b539daa-465a-43ae-953a-4d25eda684bd", "links": [{"rel": "self", "href": "https://nova.ps6.canonical.com:8774/v2.1/servers/3b539daa-465a-43ae-953a-4d25eda684bd"}, {"rel": "bookmark", "href": "https://nova.ps6.canonical.com:8774/servers/3b539daa-465a-43ae-953a-4d25eda684bd"}], "OS-DCF:diskConfig": "MANUAL", "security_groups": [{"name": "autopkgtest-juju-7f2275-prod-proposed-migration-environment-20@bos03-ppc64el-18.secgroup"}], "adminPass": "iZNs8S8JmL4v"}}
993s DEBUG (session:936) POST call to compute for https://nova.ps6.canonical.com:8774/v2.1/servers used request id req-2b80a665-808c-4981-8dc1-21e9b39e9d2b
993s DEBUG (session:517) REQ: curl -g -i -X GET https://nova.ps6.canonical.com:8774/v2.1/servers/3b539daa-465a-43ae-953a-4d25eda684bd -H "Accept: application/json" -H "OpenStack-API-Version: compute 2.87" -H "User-Agent: python-novaclient" -H "X-Auth-Token: {SHA256}ae12996c0c8a529621d9499db83f8cdc72fd762aef26fce43be0170f78c896fc" -H "X-OpenStack-Nova-API-Version: 2.87"
993s DEBUG (connectionpool:429) https://nova.ps6.canonical.com:8774 "GET /v2.1/servers/3b539daa-465a-43ae-953a-4d25eda684bd HTTP/1.1" 200 3244
993s DEBUG (session:548) RESP: [200] Connection: Keep-Alive Content-Length: 3244 Content-Type: application/json Date: Wed, 19 Feb 2025 17:40:38 GMT Keep-Alive: timeout=75, max=994 OpenStack-API-Version: compute 2.87 Server: Apache/2.4.52 (Ubuntu) Vary: OpenStack-API-Version,X-OpenStack-Nova-API-Version X-OpenStack-Nova-API-Version: 2.87 x-compute-request-id: req-c4165991-d5f6-4208-bb9e-f56507ad98f2 x-openstack-request-id: req-c4165991-d5f6-4208-bb9e-f56507ad98f2
993s DEBUG (session:580) RESP BODY: {"server": {"id": "3b539daa-465a-43ae-953a-4d25eda684bd", "name": "adt-plucky-ppc64el-python-biopython-20250219-172152-juju-7f2275-prod-proposed-migration-environment-20-4f0860bc-69c2-46ab-b233-4cff83fbada6", "status": "BUILD", "tenant_id": "623df63b80274c21bc79a0c35e68d615", "user_id": "c871debdeffd4cb8b69ce618fc4aa361", "metadata": {}, "hostId": "", "image": {"id": "9318aa34-3d3c-43c5-86d2-aaf9390f2f5d", "links": [{"rel": "bookmark", "href": "https://nova.ps6.canonical.com:8774/images/9318aa34-3d3c-43c5-86d2-aaf9390f2f5d"}]}, "flavor": {"vcpus": 2, "ram": 4096, "disk": 20, "ephemeral": 0, "swap": 0, "original_name": "autopkgtest-ppc64el", "extra_specs": {"aggregate_instance_extra_specs:commit": "builder-ppc64el", "hw_rng:allowed": "True"}}, "created": "2025-02-19T17:40:39Z", "updated": "2025-02-19T17:40:38Z", "addresses": {}, "accessIPv4": "", "accessIPv6": "", "links": [{"rel": "self", "href": "https://nova.ps6.canonical.com:8774/v2.1/servers/3b539daa-465a-43ae-953a-4d25eda684bd"}, {"rel": "bookmark", "href": "https://nova.ps6.canonical.com:8774/servers/3b539daa-465a-43ae-953a-4d25eda684bd"}], "OS-DCF:diskConfig": "MANUAL", "progress": 0, "OS-EXT-AZ:availability_zone": "", "config_drive": "", "key_name": "testbed-juju-7f2275-prod-proposed-migration-environment-20", "OS-SRV-USG:launched_at": null, "OS-SRV-USG:terminated_at": null, "OS-EXT-SRV-ATTR:host": null, "OS-EXT-SRV-ATTR:instance_name": "", "OS-EXT-SRV-ATTR:hypervisor_hostname": null, "OS-EXT-SRV-ATTR:reservation_id": "r-ga0fkvk4", "OS-EXT-SRV-ATTR:launch_index": 0, "OS-EXT-SRV-ATTR:hostname": "adt-plucky-ppc64el-python-biopython-20250219-172152-juju-7f2275", "OS-EXT-SRV-ATTR:kernel_id": "", "OS-EXT-SRV-ATTR:ramdisk_id": "", "OS-EXT-SRV-ATTR:root_device_name": null, "OS-EXT-SRV-ATTR:user_data": "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", "OS-EXT-STS:task_state": "scheduling", "OS-EXT-STS:vm_state": "building", "OS-EXT-STS:power_state": 0, "os-extended-volumes:volumes_attached": [], "locked": false, "locked_reason": null, "description": null, "tags": [], "trusted_image_certificates": null, "server_groups": []}}
993s DEBUG (session:936) GET call to compute for https://nova.ps6.canonical.com:8774/v2.1/servers/3b539daa-465a-43ae-953a-4d25eda684bd used request id req-c4165991-d5f6-4208-bb9e-f56507ad98f2
993s DEBUG (session:517) REQ: curl -g -i -X GET https://glance.ps6.canonical.com:9292/v2/images/9318aa34-3d3c-43c5-86d2-aaf9390f2f5d -H "Accept: application/json" -H "OpenStack-API-Version: compute 2.87" -H "User-Agent: python-novaclient" -H "X-Auth-Token: {SHA256}ae12996c0c8a529621d9499db83f8cdc72fd762aef26fce43be0170f78c896fc" -H "X-OpenStack-Nova-API-Version: 2.87"
993s DEBUG (connectionpool:429) https://glance.ps6.canonical.com:9292 "GET /v2/images/9318aa34-3d3c-43c5-86d2-aaf9390f2f5d HTTP/1.1" 200 2294
993s DEBUG (session:548) RESP: [200] Connection: Keep-Alive Content-Length: 2294 Content-Type: application/json Date: Wed, 19 Feb 2025 17:40:38 GMT Keep-Alive: timeout=75, max=999 Server: Apache/2.4.52 (Ubuntu) X-Openstack-Request-Id: req-d1470a28-8901-4efc-957a-95f50de97ce4
993s DEBUG (session:580) RESP BODY: {"architecture": "ppc64le", "base_image_ref": "75c910fb-86d3-481a-a4b6-c4670f38d780", "boot_roles": "load-balancer_member,member,reader", "content_id": "auto.sync", "hw_cdrom_bus": "scsi", "hw_disk_bus": "virtio", "hw_machine_type": "pseries", "hw_video_model": "vga", "hw_vif_model": "virtio", "image_location": "snapshot", "image_state": "available", "image_type": "snapshot", "instance_uuid": "3a84a59e-0d61-4568-b3ee-f83c37d7fe47", "item_name": "disk1.img", "os_distro": "ubuntu", "os_version": "25.04", "owner_id": "623df63b80274c21bc79a0c35e68d615", "owner_project_name": "prod-proposed-migration-ppc64el_project", "owner_user_name": "prod-proposed-migration-ppc64el", "product_name": "com.ubuntu.cloud.daily:server:25.04:ppc64el", "simplestreams_metadata": "{\"aliases\": \"25.04,p,plucky,devel\", \"arch\": \"ppc64el\", \"ftype\": \"disk1.img\", \"label\": \"daily\", \"md5\": \"75cf4ebffa6ce75c5396564290b6a8f7\", \"os\": \"ubuntu\", \"pubname\": \"ubuntu-plucky-daily-ppc64el-server-20250113\", \"release\": \"plucky\", \"release_codename\": \"P", "source_content_id": "com.ubuntu.cloud:daily:download", "user_id": "c871debdeffd4cb8b69ce618fc4aa361", "version_name": "20250113", "name": "adt/ubuntu-plucky-ppc64el-server-20250218.img", "disk_format": "qcow2", "container_format": "bare", "visibility": "private", "size": 3164667904, "virtual_size": 21474836480, "status": "active", "checksum": "c4bfbc82e14f182edcb5e530631c7ad5", "protected": false, "min_ram": 0, "min_disk": 20, "owner": "623df63b80274c21bc79a0c35e68d615", "os_hidden": false, "os_hash_algo": "sha512", "os_hash_value": "29879c317cbd38f9b5c9009de4e28f33db639542d62b39eab3525155ea8ea3f7195071808aa55be69d4e20580f260523df78c8bf0ee9bcbe80682097a7122aff", "id": "9318aa34-3d3c-43c5-86d2-aaf9390f2f5d", "created_at": "2025-02-18T18:04:37Z", "updated_at": "2025-02-18T18:05:16Z", "locations": [{"url": "rbd://eea9d068-c18c-11ed-8dc0-013aacb71b80/glance/9318aa34-3d3c-43c5-86d2-aaf9390f2f5d/snap", "metadata": {"store": "ceph"}}], "direct_url": "rbd://eea9d068-c18c-11ed-8dc0-013aacb71b80/glance/9318aa34-3d3c-43c5-86d2-aaf9390f2f5d/snap", "tags": [], "self": "/v2/images/9318aa34-3d3c-43c5-86d2-aaf9390f2f5d", "file": "/v2/images/9318aa34-3d3c-43c5-86d2-aaf9390f2f5d/file", "schema": "/v2/schemas/image", "stores": "ceph"}
993s DEBUG (session:936) GET call to image for https://glance.ps6.canonical.com:9292/v2/images/9318aa34-3d3c-43c5-86d2-aaf9390f2f5d used request id req-d1470a28-8901-4efc-957a-95f50de97ce4
993s +--------------------------------------+---------------------------------------------------------------------------------------------------------------------------------------------+
993s | Property                             | Value                                                                                                                                       |
993s +--------------------------------------+---------------------------------------------------------------------------------------------------------------------------------------------+
993s | OS-DCF:diskConfig                    | MANUAL                                                                                                                                      |
993s | OS-EXT-AZ:availability_zone          |                                                                                                                                             |
993s | OS-EXT-SRV-ATTR:host                 | -                                                                                                                                           |
993s | OS-EXT-SRV-ATTR:hostname             | adt-plucky-ppc64el-python-biopython-20250219-172152-juju-7f2275                                                                             |
993s | OS-EXT-SRV-ATTR:hypervisor_hostname  | -                                                                                                                                           |
993s | OS-EXT-SRV-ATTR:instance_name        |                                                                                                                                             |
993s | OS-EXT-SRV-ATTR:kernel_id            |                                                                                                                                             |
993s | OS-EXT-SRV-ATTR:launch_index         | 0                                                                                                                                           |
993s | OS-EXT-SRV-ATTR:ramdisk_id           |                                                                                                                                             |
993s | OS-EXT-SRV-ATTR:reservation_id       | r-ga0fkvk4                                                                                                                                  |
993s | OS-EXT-SRV-ATTR:root_device_name     | -                                                                                                                                           |
993s | OS-EXT-STS:power_state               | 0                                                                                                                                           |
993s | OS-EXT-STS:task_state                | scheduling                                                                                                                                  |
993s | OS-EXT-STS:vm_state                  | building                                                                                                                                    |
993s | OS-SRV-USG:launched_at               | -                                                                                                                                           |
993s | OS-SRV-USG:terminated_at             | -                                                                                                                                           |
993s | accessIPv4                           |                                                                                                                                             |
993s | accessIPv6                           |                                                                                                                                             |
993s | adminPass                            | iZNs8S8JmL4v                                                                                                                                |
993s | config_drive                         |                                                                                                                                             |
993s | created                              | 2025-02-19T17:40:39Z                                                                                                                        |
993s | description                          | -                                                                                                                                           |
993s | flavor:disk                          | 20                                                                                                                                          |
993s | flavor:ephemeral                     | 0                                                                                                                                           |
993s | flavor:extra_specs                   | {"aggregate_instance_extra_specs:commit": "builder-ppc64el", "hw_rng:allowed": "True"}                                                      |
993s | flavor:original_name                 | autopkgtest-ppc64el                                                                                                                         |
993s | flavor:ram                           | 4096                                                                                                                                        |
993s | flavor:swap                          | 0                                                                                                                                           |
993s | flavor:vcpus                         | 2                                                                                                                                           |
993s | hostId                               |                                                                                                                                             |
993s | id                                   | 3b539daa-465a-43ae-953a-4d25eda684bd                                                                                                        |
993s | image                                | adt/ubuntu-plucky-ppc64el-server-20250218.img (9318aa34-3d3c-43c5-86d2-aaf9390f2f5d)                                                        |
993s | key_name                             | testbed-juju-7f2275-prod-proposed-migration-environment-20                                                                                  |
993s | locked                               | False                                                                                                                                       |
993s | locked_reason                        | -                                                                                                                                           |
993s | metadata                             | {}                                                                                                                                          |
993s | name                                 | adt-plucky-ppc64el-python-biopython-20250219-172152-juju-7f2275-prod-proposed-migration-environment-20-4f0860bc-69c2-46ab-b233-4cff83fbada6 |
993s | os-extended-volumes:volumes_attached | []                                                                                                                                          |
993s | progress                             | 0                                                                                                                                           |
993s | security_groups                      | autopkgtest-juju-7f2275-prod-proposed-migration-environment-20@bos03-ppc64el-18.secgroup                                                    |
993s | server_groups                        | []                                                                                                                                          |
993s | status                               | BUILD                                                                                                                                       |
993s | tags                                 | []                                                                                                                                          |
993s | tenant_id                            | 623df63b80274c21bc79a0c35e68d615                                                                                                            |
993s | trusted_image_certificates           | -                                                                                                                                           |
993s | updated                              | 2025-02-19T17:40:38Z                                                                                                                        |
993s | user_id                              | c871debdeffd4cb8b69ce618fc4aa361                                                                                                            |
993s +--------------------------------------+---------------------------------------------------------------------------------------------------------------------------------------------+DEBUG (session:517) REQ: curl -g -i -X GET https://nova.ps6.canonical.com:8774/v2.1/servers/3b539daa-465a-43ae-953a-4d25eda684bd -H "Accept: application/json" -H "OpenStack-API-Version: compute 2.87" -H "User-Agent: python-novaclient" -H "X-Auth-Token: {SHA256}ae12996c0c8a529621d9499db83f8cdc72fd762aef26fce43be0170f78c896fc" -H "X-OpenStack-Nova-API-Version: 2.87"
993s DEBUG (connectionpool:429) https://nova.ps6.canonical.com:8774 "GET /v2.1/servers/3b539daa-465a-43ae-953a-4d25eda684bd HTTP/1.1" 200 3371
993s DEBUG (session:548) RESP: [200] Connection: Keep-Alive Content-Length: 3371 Content-Type: application/json Date: Wed, 19 Feb 2025 17:40:38 GMT Keep-Alive: timeout=75, max=993 OpenStack-API-Version: compute 2.87 Server: Apache/2.4.52 (Ubuntu) Vary: OpenStack-API-Version,X-OpenStack-Nova-API-Version X-OpenStack-Nova-API-Version: 2.87 x-compute-request-id: req-a92a69b6-4295-4b7d-aa5a-9b662a64310e x-openstack-request-id: req-a92a69b6-4295-4b7d-aa5a-9b662a64310e
993s DEBUG (session:580) RESP BODY: {"server": {"id": "3b539daa-465a-43ae-953a-4d25eda684bd", "name": "adt-plucky-ppc64el-python-biopython-20250219-172152-juju-7f2275-prod-proposed-migration-environment-20-4f0860bc-69c2-46ab-b233-4cff83fbada6", "status": "ERROR", "tenant_id": "623df63b80274c21bc79a0c35e68d615", "user_id": "c871debdeffd4cb8b69ce618fc4aa361", "metadata": {}, "hostId": "", "image": {"id": "9318aa34-3d3c-43c5-86d2-aaf9390f2f5d", "links": [{"rel": "bookmark", "href": "https://nova.ps6.canonical.com:8774/images/9318aa34-3d3c-43c5-86d2-aaf9390f2f5d"}]}, "flavor": {"vcpus": 2, "ram": 4096, "disk": 20, "ephemeral": 0, "swap": 0, "original_name": "autopkgtest-ppc64el", "extra_specs": {"aggregate_instance_extra_specs:commit": "builder-ppc64el", "hw_rng:allowed": "True"}}, "created": "2025-02-19T17:40:38Z", "updated": "2025-02-19T17:40:39Z", "addresses": {}, "accessIPv4": "", "accessIPv6": "", "links": [{"rel": "self", "href": "https://nova.ps6.canonical.com:8774/v2.1/servers/3b539daa-465a-43ae-953a-4d25eda684bd"}, {"rel": "bookmark", "href": "https://nova.ps6.canonical.com:8774/servers/3b539daa-465a-43ae-953a-4d25eda684bd"}], "OS-DCF:diskConfig": "MANUAL", "fault": {"code": 500, "created": "2025-02-19T17:40:39Z", "message": "No valid host was found. There are not enough hosts available."}, "OS-EXT-AZ:availability_zone": "", "config_drive": "", "key_name": "testbed-juju-7f2275-prod-proposed-migration-environment-20", "OS-SRV-USG:launched_at": null, "OS-SRV-USG:terminated_at": null, "OS-EXT-SRV-ATTR:host": null, "OS-EXT-SRV-ATTR:instance_name": "instance-000b3bd0", "OS-EXT-SRV-ATTR:hypervisor_hostname": null, "OS-EXT-SRV-ATTR:reservation_id": "r-ga0fkvk4", "OS-EXT-SRV-ATTR:launch_index": 0, "OS-EXT-SRV-ATTR:hostname": "adt-plucky-ppc64el-python-biopython-20250219-172152-juju-7f2275", "OS-EXT-SRV-ATTR:kernel_id": "", "OS-EXT-SRV-ATTR:ramdisk_id": "", "OS-EXT-SRV-ATTR:root_device_name": null, "OS-EXT-SRV-ATTR:user_data": "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", "OS-EXT-STS:task_state": null, "OS-EXT-STS:vm_state": "error", "OS-EXT-STS:power_state": 0, "os-extended-volumes:volumes_attached": [], "locked": false, "locked_reason": null, "description": null, "tags": [], "trusted_image_certificates": null, "server_groups": []}}
993s DEBUG (session:936) GET call to compute for https://nova.ps6.canonical.com:8774/v2.1/servers/3b539daa-465a-43ae-953a-4d25eda684bd used request id req-a92a69b6-4295-4b7d-aa5a-9b662a64310e
993s DEBUG (shell:822) <Server: adt-plucky-ppc64el-python-biopython-20250219-172152-juju-7f2275-prod-proposed-migration-environment-20-4f0860bc-69c2-46ab-b233-4cff83fbada6>
993s Traceback (most recent call last):
993s   File "/usr/lib/python3/dist-packages/novaclient/shell.py", line 820, in main
993s     OpenStackComputeShell().main(argv)
993s   File "/usr/lib/python3/dist-packages/novaclient/shell.py", line 742, in main
993s     args.func(self.cs, args)
993s   File "/usr/lib/python3/dist-packages/novaclient/v2/shell.py", line 980, in do_boot
993s     _poll_for_status(cs.servers.get, server.id, 'building', ['active'])
993s   File "/usr/lib/python3/dist-packages/novaclient/v2/shell.py", line 1019, in _poll_for_status
993s     raise exceptions.ResourceInErrorState(obj)
993s novaclient.exceptions.ResourceInErrorState: <Server: adt-plucky-ppc64el-python-biopython-20250219-172152-juju-7f2275-prod-proposed-migration-environment-20-4f0860bc-69c2-46ab-b233-4cff83fbada6>
993s ERROR (ResourceInErrorState): <Server: adt-plucky-ppc64el-python-biopython-20250219-172152-juju-7f2275-prod-proposed-migration-environment-20-4f0860bc-69c2-46ab-b233-4cff83fbada6>
993s 
993s 
993s 
993s Error building server
996s autopkgtest [17:56:33]: testbed dpkg architecture: ppc64el
996s autopkgtest [17:56:33]: testbed apt version: 2.9.29
996s autopkgtest [17:56:33]: @@@@@@@@@@@@@@@@@@@@ test bed setup
997s autopkgtest [17:56:34]: testbed release detected to be: None
997s autopkgtest [17:56:34]: updating testbed package index (apt update)
998s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease [110 kB]
998s Hit:2 http://ftpmaster.internal/ubuntu plucky InRelease
998s Hit:3 http://ftpmaster.internal/ubuntu plucky-updates InRelease
998s Hit:4 http://ftpmaster.internal/ubuntu plucky-security InRelease
998s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse Sources [14.5 kB]
998s Get:6 http://ftpmaster.internal/ubuntu plucky-proposed/restricted Sources [3120 B]
998s Get:7 http://ftpmaster.internal/ubuntu plucky-proposed/universe Sources [732 kB]
998s Get:8 http://ftpmaster.internal/ubuntu plucky-proposed/main Sources [73.1 kB]
998s Get:9 http://ftpmaster.internal/ubuntu plucky-proposed/main ppc64el Packages [96.5 kB]
998s Get:10 http://ftpmaster.internal/ubuntu plucky-proposed/restricted ppc64el Packages [760 B]
998s Get:11 http://ftpmaster.internal/ubuntu plucky-proposed/universe ppc64el Packages [667 kB]
998s Get:12 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse ppc64el Packages [5760 B]
999s Fetched 1703 kB in 1s (1637 kB/s)
1000s Reading package lists...
1000s Reading package lists...
1001s Building dependency tree...
1001s Reading state information...
1001s Calculating upgrade...
1001s The following NEW packages will be installed:
1001s   libapt-pkg7.0
1001s The following packages will be upgraded:
1001s   apt apt-utils dhcpcd-base iproute2 libgpgme11t64 liblsof0 libp11-kit0 lsof
1001s   rsyslog sysvinit-utils
1001s 10 upgraded, 1 newly installed, 0 to remove and 0 not upgraded.
1001s Need to get 5997 kB of archives.
1001s After this operation, 3932 kB of additional disk space will be used.
1001s Get:1 http://ftpmaster.internal/ubuntu plucky/main ppc64el sysvinit-utils ppc64el 3.14-1ubuntu1 [37.0 kB]
1002s Get:2 http://ftpmaster.internal/ubuntu plucky/main ppc64el libapt-pkg7.0 ppc64el 2.9.30 [1152 kB]
1002s Get:3 http://ftpmaster.internal/ubuntu plucky/main ppc64el apt ppc64el 2.9.30 [1439 kB]
1002s Get:4 http://ftpmaster.internal/ubuntu plucky/main ppc64el apt-utils ppc64el 2.9.30 [228 kB]
1002s Get:5 http://ftpmaster.internal/ubuntu plucky/main ppc64el dhcpcd-base ppc64el 1:10.1.0-7 [280 kB]
1002s Get:6 http://ftpmaster.internal/ubuntu plucky/main ppc64el iproute2 ppc64el 6.13.0-1ubuntu1 [1419 kB]
1002s Get:7 http://ftpmaster.internal/ubuntu plucky/main ppc64el libp11-kit0 ppc64el 0.25.5-2ubuntu3 [309 kB]
1002s Get:8 http://ftpmaster.internal/ubuntu plucky/main ppc64el rsyslog ppc64el 8.2412.0-2ubuntu1 [632 kB]
1002s Get:9 http://ftpmaster.internal/ubuntu plucky/main ppc64el lsof ppc64el 4.99.4+dfsg-1 [255 kB]
1002s Get:10 http://ftpmaster.internal/ubuntu plucky/main ppc64el liblsof0 ppc64el 4.99.4+dfsg-1 [68.4 kB]
1002s Get:11 http://ftpmaster.internal/ubuntu plucky/main ppc64el libgpgme11t64 ppc64el 1.24.2-1ubuntu1 [177 kB]
1003s Preconfiguring packages ...
1003s Fetched 5997 kB in 1s (7997 kB/s)
1003s (Reading database ... 
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(Reading database ... 55%
(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 106322 files and directories currently installed.)
1003s Preparing to unpack .../sysvinit-utils_3.14-1ubuntu1_ppc64el.deb ...
1003s Unpacking sysvinit-utils (3.14-1ubuntu1) over (3.08-6ubuntu3) ...
1003s Setting up sysvinit-utils (3.14-1ubuntu1) ...
1003s Selecting previously unselected package libapt-pkg7.0:ppc64el.
1003s (Reading database ... 
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(Reading database ... 65%
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(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 106322 files and directories currently installed.)
1003s Preparing to unpack .../libapt-pkg7.0_2.9.30_ppc64el.deb ...
1003s Unpacking libapt-pkg7.0:ppc64el (2.9.30) ...
1003s Setting up libapt-pkg7.0:ppc64el (2.9.30) ...
1004s (Reading database ... 
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(Reading database ... 80%
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(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 106371 files and directories currently installed.)
1004s Preparing to unpack .../apt_2.9.30_ppc64el.deb ...
1004s Unpacking apt (2.9.30) over (2.9.29) ...
1004s Setting up apt (2.9.30) ...
1005s (Reading database ... 
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(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 106371 files and directories currently installed.)
1005s Preparing to unpack .../0-apt-utils_2.9.30_ppc64el.deb ...
1005s Unpacking apt-utils (2.9.30) over (2.9.29) ...
1005s Preparing to unpack .../1-dhcpcd-base_1%3a10.1.0-7_ppc64el.deb ...
1005s Unpacking dhcpcd-base (1:10.1.0-7) over (1:10.1.0-6) ...
1005s Preparing to unpack .../2-iproute2_6.13.0-1ubuntu1_ppc64el.deb ...
1005s Unpacking iproute2 (6.13.0-1ubuntu1) over (6.10.0-2ubuntu1) ...
1005s Preparing to unpack .../3-libp11-kit0_0.25.5-2ubuntu3_ppc64el.deb ...
1005s Unpacking libp11-kit0:ppc64el (0.25.5-2ubuntu3) over (0.25.5-2ubuntu2) ...
1006s Preparing to unpack .../4-rsyslog_8.2412.0-2ubuntu1_ppc64el.deb ...
1006s Unpacking rsyslog (8.2412.0-2ubuntu1) over (8.2412.0-1ubuntu1) ...
1006s Preparing to unpack .../5-lsof_4.99.4+dfsg-1_ppc64el.deb ...
1006s Unpacking lsof (4.99.4+dfsg-1) over (4.99.3+dfsg-2) ...
1006s Preparing to unpack .../6-liblsof0_4.99.4+dfsg-1_ppc64el.deb ...
1006s Unpacking liblsof0 (4.99.4+dfsg-1) over (4.99.3+dfsg-2) ...
1006s Preparing to unpack .../7-libgpgme11t64_1.24.2-1ubuntu1_ppc64el.deb ...
1006s Unpacking libgpgme11t64:ppc64el (1.24.2-1ubuntu1) over (1.24.1-4ubuntu1) ...
1006s Setting up apt-utils (2.9.30) ...
1006s Setting up liblsof0 (4.99.4+dfsg-1) ...
1006s Setting up iproute2 (6.13.0-1ubuntu1) ...
1006s Setting up rsyslog (8.2412.0-2ubuntu1) ...
1006s info: The user `syslog' is already a member of `adm'.
1008s Setting up libp11-kit0:ppc64el (0.25.5-2ubuntu3) ...
1008s Setting up dhcpcd-base (1:10.1.0-7) ...
1008s Setting up lsof (4.99.4+dfsg-1) ...
1008s Setting up libgpgme11t64:ppc64el (1.24.2-1ubuntu1) ...
1008s Processing triggers for man-db (2.13.0-1) ...
1013s Processing triggers for libc-bin (2.40-4ubuntu1) ...
1014s Reading package lists...
1014s Building dependency tree...
1014s Reading state information...
1014s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
1014s autopkgtest [17:56:51]: upgrading testbed (apt dist-upgrade and autopurge)
1015s Reading package lists...
1015s Building dependency tree...
1015s Reading state information...
1015s Calculating upgrade...Starting pkgProblemResolver with broken count: 0
1015s Starting 2 pkgProblemResolver with broken count: 0
1015s Done
1016s Entering ResolveByKeep
1016s 
1016s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
1016s Reading package lists...
1016s Building dependency tree...
1016s Reading state information...
1017s Starting pkgProblemResolver with broken count: 0
1017s Starting 2 pkgProblemResolver with broken count: 0
1017s Done
1017s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
1017s autopkgtest [17:56:54]: rebooting testbed after setup commands that affected boot
1052s autopkgtest-virt-ssh: WARNING: ssh connection failed. Retrying in 3 seconds...
1058s autopkgtest [17:57:35]: testbed running kernel: Linux 6.12.0-15-generic #15-Ubuntu SMP Tue Feb  4 16:32:08 UTC 2025
1061s autopkgtest [17:57:38]: @@@@@@@@@@@@@@@@@@@@ apt-source python-biopython
1066s Get:1 http://ftpmaster.internal/ubuntu plucky/universe python-biopython 1.85+dfsg-2 (dsc) [3439 B]
1066s Get:2 http://ftpmaster.internal/ubuntu plucky/universe python-biopython 1.85+dfsg-2 (tar) [14.6 MB]
1066s Get:3 http://ftpmaster.internal/ubuntu plucky/universe python-biopython 1.85+dfsg-2 (diff) [42.9 kB]
1066s gpgv: Signature made Thu Feb  6 14:44:48 2025 UTC
1066s gpgv:                using RSA key 724D609337113C710550D7473C26763F6C67E6E2
1066s gpgv:                issuer "crusoe@debian.org"
1066s gpgv: Can't check signature: No public key
1066s dpkg-source: warning: cannot verify inline signature for ./python-biopython_1.85+dfsg-2.dsc: no acceptable signature found
1068s autopkgtest [17:57:45]: testing package python-biopython version 1.85+dfsg-2
1068s autopkgtest [17:57:45]: build not needed
1073s autopkgtest [17:57:50]: test dependencies: preparing testbed
1073s Reading package lists...
1074s Building dependency tree...
1074s Reading state information...
1074s Starting pkgProblemResolver with broken count: 0
1074s Starting 2 pkgProblemResolver with broken count: 0
1074s Done
1074s The following NEW packages will be installed:
1074s   fontconfig-config fonts-dejavu-core fonts-dejavu-mono fonts-urw-base35
1074s   libblas3 libcairo2 libdeflate0 libfontconfig1 libfontenc1 libgfortran5
1074s   libgomp1 libgraphite2-3 libharfbuzz0b libimagequant0 libjbig0 libjpeg-turbo8
1074s   libjpeg8 libjs-jquery libjs-sphinxdoc libjs-underscore liblapack3 liblcms2-2
1074s   liblerc4 libopenjp2-7 libpixman-1-0 libraqm0 libsharpyuv0 libtiff6 libwebp7
1074s   libwebpdemux2 libwebpmux3 libxcb-render0 libxcb-shm0 libxrender1
1074s   python-biopython-doc python3-all python3-biopython python3-biopython-sql
1074s   python3-cairo python3-freetype python3-numpy python3-pil python3-reportlab
1074s   python3-rlpycairo python3.12 python3.12-minimal sgml-base w3c-sgml-lib
1074s   x11-common xfonts-encodings xfonts-utils xml-core
1074s 0 upgraded, 52 newly installed, 0 to remove and 0 not upgraded.
1074s Need to get 51.8 MB of archives.
1074s After this operation, 158 MB of additional disk space will be used.
1074s Get:1 http://ftpmaster.internal/ubuntu plucky/main ppc64el python3.12-minimal ppc64el 3.12.9-1 [2465 kB]
1075s Get:2 http://ftpmaster.internal/ubuntu plucky/main ppc64el sgml-base all 1.31 [11.4 kB]
1075s Get:3 http://ftpmaster.internal/ubuntu plucky/main ppc64el python3.12 ppc64el 3.12.9-1 [671 kB]
1075s Get:4 http://ftpmaster.internal/ubuntu plucky/main ppc64el fonts-dejavu-mono all 2.37-8 [502 kB]
1075s Get:5 http://ftpmaster.internal/ubuntu plucky/main ppc64el fonts-dejavu-core all 2.37-8 [835 kB]
1075s Get:6 http://ftpmaster.internal/ubuntu plucky/main ppc64el libfontenc1 ppc64el 1:1.1.8-1build1 [15.8 kB]
1075s Get:7 http://ftpmaster.internal/ubuntu plucky/main ppc64el x11-common all 1:7.7+23ubuntu3 [21.7 kB]
1075s Get:8 http://ftpmaster.internal/ubuntu plucky/main ppc64el xfonts-encodings all 1:1.0.5-0ubuntu2 [578 kB]
1075s Get:9 http://ftpmaster.internal/ubuntu plucky/main ppc64el xfonts-utils ppc64el 1:7.7+7 [114 kB]
1075s Get:10 http://ftpmaster.internal/ubuntu plucky/main ppc64el fonts-urw-base35 all 20200910-8 [11.0 MB]
1075s Get:11 http://ftpmaster.internal/ubuntu plucky/main ppc64el fontconfig-config ppc64el 2.15.0-2ubuntu1 [37.5 kB]
1075s Get:12 http://ftpmaster.internal/ubuntu plucky/main ppc64el libblas3 ppc64el 3.12.1-2 [239 kB]
1075s Get:13 http://ftpmaster.internal/ubuntu plucky/main ppc64el libfontconfig1 ppc64el 2.15.0-2ubuntu1 [188 kB]
1075s Get:14 http://ftpmaster.internal/ubuntu plucky/main ppc64el libpixman-1-0 ppc64el 0.44.0-3 [334 kB]
1075s Get:15 http://ftpmaster.internal/ubuntu plucky/main ppc64el libxcb-render0 ppc64el 1.17.0-2 [17.2 kB]
1075s Get:16 http://ftpmaster.internal/ubuntu plucky/main ppc64el libxcb-shm0 ppc64el 1.17.0-2 [5980 B]
1075s Get:17 http://ftpmaster.internal/ubuntu plucky/main ppc64el libxrender1 ppc64el 1:0.9.10-1.1build1 [23.1 kB]
1075s Get:18 http://ftpmaster.internal/ubuntu plucky/main ppc64el libcairo2 ppc64el 1.18.2-2 [747 kB]
1075s Get:19 http://ftpmaster.internal/ubuntu plucky/main ppc64el libdeflate0 ppc64el 1.23-1 [63.4 kB]
1075s Get:20 http://ftpmaster.internal/ubuntu plucky/main ppc64el libgfortran5 ppc64el 15-20250213-1ubuntu1 [613 kB]
1076s Get:21 http://ftpmaster.internal/ubuntu plucky/main ppc64el libgomp1 ppc64el 15-20250213-1ubuntu1 [168 kB]
1076s Get:22 http://ftpmaster.internal/ubuntu plucky/main ppc64el libgraphite2-3 ppc64el 1.3.14-2ubuntu1 [84.6 kB]
1076s Get:23 http://ftpmaster.internal/ubuntu plucky/main ppc64el libharfbuzz0b ppc64el 10.2.0-1 [598 kB]
1076s Get:24 http://ftpmaster.internal/ubuntu plucky/main ppc64el libimagequant0 ppc64el 2.18.0-1build1 [43.2 kB]
1076s Get:25 http://ftpmaster.internal/ubuntu plucky/main ppc64el libjpeg-turbo8 ppc64el 2.1.5-3ubuntu2 [215 kB]
1076s Get:26 http://ftpmaster.internal/ubuntu plucky/main ppc64el libjpeg8 ppc64el 8c-2ubuntu11 [2148 B]
1076s Get:27 http://ftpmaster.internal/ubuntu plucky/main ppc64el libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [328 kB]
1076s Get:28 http://ftpmaster.internal/ubuntu plucky/main ppc64el libjs-underscore all 1.13.4~dfsg+~1.11.4-3 [118 kB]
1076s Get:29 http://ftpmaster.internal/ubuntu plucky-proposed/main ppc64el libjs-sphinxdoc all 8.1.3-5 [31.0 kB]
1076s Get:30 http://ftpmaster.internal/ubuntu plucky/main ppc64el liblapack3 ppc64el 3.12.1-2 [2813 kB]
1076s Get:31 http://ftpmaster.internal/ubuntu plucky/main ppc64el liblcms2-2 ppc64el 2.16-2 [243 kB]
1076s Get:32 http://ftpmaster.internal/ubuntu plucky/main ppc64el liblerc4 ppc64el 4.0.0+ds-5ubuntu1 [298 kB]
1076s Get:33 http://ftpmaster.internal/ubuntu plucky/main ppc64el libraqm0 ppc64el 0.10.2-1 [19.2 kB]
1076s Get:34 http://ftpmaster.internal/ubuntu plucky/main ppc64el libsharpyuv0 ppc64el 1.5.0-0.1 [22.3 kB]
1076s Get:35 http://ftpmaster.internal/ubuntu plucky/main ppc64el libjbig0 ppc64el 2.1-6.1ubuntu2 [35.9 kB]
1076s Get:36 http://ftpmaster.internal/ubuntu plucky/main ppc64el libwebp7 ppc64el 1.5.0-0.1 [315 kB]
1076s Get:37 http://ftpmaster.internal/ubuntu plucky/main ppc64el libtiff6 ppc64el 4.5.1+git230720-4ubuntu4 [272 kB]
1076s Get:38 http://ftpmaster.internal/ubuntu plucky/main ppc64el libwebpdemux2 ppc64el 1.5.0-0.1 [14.6 kB]
1076s Get:39 http://ftpmaster.internal/ubuntu plucky/main ppc64el libwebpmux3 ppc64el 1.5.0-0.1 [31.1 kB]
1076s Get:40 http://ftpmaster.internal/ubuntu plucky/universe ppc64el python-biopython-doc all 1.85+dfsg-2 [18.2 MB]
1077s Get:41 http://ftpmaster.internal/ubuntu plucky/main ppc64el python3-all ppc64el 3.13.1-1~exp2 [896 B]
1077s Get:42 http://ftpmaster.internal/ubuntu plucky/main ppc64el python3-numpy ppc64el 1:1.26.4+ds-13 [5146 kB]
1077s Get:43 http://ftpmaster.internal/ubuntu plucky/main ppc64el libopenjp2-7 ppc64el 2.5.0-2ubuntu3 [247 kB]
1077s Get:44 http://ftpmaster.internal/ubuntu plucky/main ppc64el python3-pil ppc64el 11.1.0-5 [618 kB]
1077s Get:45 http://ftpmaster.internal/ubuntu plucky/main ppc64el python3-cairo ppc64el 1.26.1-2build1 [150 kB]
1077s Get:46 http://ftpmaster.internal/ubuntu plucky/universe ppc64el python3-freetype all 2.5.1-1 [92.3 kB]
1077s Get:47 http://ftpmaster.internal/ubuntu plucky/universe ppc64el python3-rlpycairo all 0.3.0-3 [9130 B]
1077s Get:48 http://ftpmaster.internal/ubuntu plucky/universe ppc64el python3-reportlab all 4.3.0-1 [1137 kB]
1077s Get:49 http://ftpmaster.internal/ubuntu plucky/main ppc64el xml-core all 0.19 [20.3 kB]
1077s Get:50 http://ftpmaster.internal/ubuntu plucky/universe ppc64el w3c-sgml-lib all 1.3-3 [280 kB]
1077s Get:51 http://ftpmaster.internal/ubuntu plucky/universe ppc64el python3-biopython ppc64el 1.85+dfsg-2 [1771 kB]
1077s Get:52 http://ftpmaster.internal/ubuntu plucky/universe ppc64el python3-biopython-sql all 1.85+dfsg-2 [26.4 kB]
1077s Fetched 51.8 MB in 3s (19.8 MB/s)
1078s Selecting previously unselected package python3.12-minimal.
1078s (Reading database ... 
(Reading database ... 5%
(Reading database ... 10%
(Reading database ... 15%
(Reading database ... 20%
(Reading database ... 25%
(Reading database ... 30%
(Reading database ... 35%
(Reading database ... 40%
(Reading database ... 45%
(Reading database ... 50%
(Reading database ... 55%
(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 106372 files and directories currently installed.)
1078s Preparing to unpack .../00-python3.12-minimal_3.12.9-1_ppc64el.deb ...
1078s Unpacking python3.12-minimal (3.12.9-1) ...
1078s Selecting previously unselected package sgml-base.
1078s Preparing to unpack .../01-sgml-base_1.31_all.deb ...
1078s Unpacking sgml-base (1.31) ...
1078s Selecting previously unselected package python3.12.
1078s Preparing to unpack .../02-python3.12_3.12.9-1_ppc64el.deb ...
1078s Unpacking python3.12 (3.12.9-1) ...
1078s Selecting previously unselected package fonts-dejavu-mono.
1078s Preparing to unpack .../03-fonts-dejavu-mono_2.37-8_all.deb ...
1078s Unpacking fonts-dejavu-mono (2.37-8) ...
1078s Selecting previously unselected package fonts-dejavu-core.
1078s Preparing to unpack .../04-fonts-dejavu-core_2.37-8_all.deb ...
1078s Unpacking fonts-dejavu-core (2.37-8) ...
1078s Selecting previously unselected package libfontenc1:ppc64el.
1078s Preparing to unpack .../05-libfontenc1_1%3a1.1.8-1build1_ppc64el.deb ...
1078s Unpacking libfontenc1:ppc64el (1:1.1.8-1build1) ...
1078s Selecting previously unselected package x11-common.
1078s Preparing to unpack .../06-x11-common_1%3a7.7+23ubuntu3_all.deb ...
1078s Unpacking x11-common (1:7.7+23ubuntu3) ...
1078s Selecting previously unselected package xfonts-encodings.
1078s Preparing to unpack .../07-xfonts-encodings_1%3a1.0.5-0ubuntu2_all.deb ...
1078s Unpacking xfonts-encodings (1:1.0.5-0ubuntu2) ...
1078s Selecting previously unselected package xfonts-utils.
1078s Preparing to unpack .../08-xfonts-utils_1%3a7.7+7_ppc64el.deb ...
1078s Unpacking xfonts-utils (1:7.7+7) ...
1078s Selecting previously unselected package fonts-urw-base35.
1078s Preparing to unpack .../09-fonts-urw-base35_20200910-8_all.deb ...
1078s Unpacking fonts-urw-base35 (20200910-8) ...
1079s Selecting previously unselected package fontconfig-config.
1079s Preparing to unpack .../10-fontconfig-config_2.15.0-2ubuntu1_ppc64el.deb ...
1079s Unpacking fontconfig-config (2.15.0-2ubuntu1) ...
1079s Selecting previously unselected package libblas3:ppc64el.
1079s Preparing to unpack .../11-libblas3_3.12.1-2_ppc64el.deb ...
1079s Unpacking libblas3:ppc64el (3.12.1-2) ...
1079s Selecting previously unselected package libfontconfig1:ppc64el.
1079s Preparing to unpack .../12-libfontconfig1_2.15.0-2ubuntu1_ppc64el.deb ...
1079s Unpacking libfontconfig1:ppc64el (2.15.0-2ubuntu1) ...
1079s Selecting previously unselected package libpixman-1-0:ppc64el.
1079s Preparing to unpack .../13-libpixman-1-0_0.44.0-3_ppc64el.deb ...
1079s Unpacking libpixman-1-0:ppc64el (0.44.0-3) ...
1079s Selecting previously unselected package libxcb-render0:ppc64el.
1079s Preparing to unpack .../14-libxcb-render0_1.17.0-2_ppc64el.deb ...
1079s Unpacking libxcb-render0:ppc64el (1.17.0-2) ...
1079s Selecting previously unselected package libxcb-shm0:ppc64el.
1079s Preparing to unpack .../15-libxcb-shm0_1.17.0-2_ppc64el.deb ...
1079s Unpacking libxcb-shm0:ppc64el (1.17.0-2) ...
1079s Selecting previously unselected package libxrender1:ppc64el.
1079s Preparing to unpack .../16-libxrender1_1%3a0.9.10-1.1build1_ppc64el.deb ...
1079s Unpacking libxrender1:ppc64el (1:0.9.10-1.1build1) ...
1079s Selecting previously unselected package libcairo2:ppc64el.
1079s Preparing to unpack .../17-libcairo2_1.18.2-2_ppc64el.deb ...
1079s Unpacking libcairo2:ppc64el (1.18.2-2) ...
1079s Selecting previously unselected package libdeflate0:ppc64el.
1079s Preparing to unpack .../18-libdeflate0_1.23-1_ppc64el.deb ...
1079s Unpacking libdeflate0:ppc64el (1.23-1) ...
1079s Selecting previously unselected package libgfortran5:ppc64el.
1079s Preparing to unpack .../19-libgfortran5_15-20250213-1ubuntu1_ppc64el.deb ...
1079s Unpacking libgfortran5:ppc64el (15-20250213-1ubuntu1) ...
1079s Selecting previously unselected package libgomp1:ppc64el.
1079s Preparing to unpack .../20-libgomp1_15-20250213-1ubuntu1_ppc64el.deb ...
1079s Unpacking libgomp1:ppc64el (15-20250213-1ubuntu1) ...
1079s Selecting previously unselected package libgraphite2-3:ppc64el.
1079s Preparing to unpack .../21-libgraphite2-3_1.3.14-2ubuntu1_ppc64el.deb ...
1079s Unpacking libgraphite2-3:ppc64el (1.3.14-2ubuntu1) ...
1079s Selecting previously unselected package libharfbuzz0b:ppc64el.
1079s Preparing to unpack .../22-libharfbuzz0b_10.2.0-1_ppc64el.deb ...
1079s Unpacking libharfbuzz0b:ppc64el (10.2.0-1) ...
1079s Selecting previously unselected package libimagequant0:ppc64el.
1079s Preparing to unpack .../23-libimagequant0_2.18.0-1build1_ppc64el.deb ...
1079s Unpacking libimagequant0:ppc64el (2.18.0-1build1) ...
1079s Selecting previously unselected package libjpeg-turbo8:ppc64el.
1079s Preparing to unpack .../24-libjpeg-turbo8_2.1.5-3ubuntu2_ppc64el.deb ...
1079s Unpacking libjpeg-turbo8:ppc64el (2.1.5-3ubuntu2) ...
1079s Selecting previously unselected package libjpeg8:ppc64el.
1079s Preparing to unpack .../25-libjpeg8_8c-2ubuntu11_ppc64el.deb ...
1079s Unpacking libjpeg8:ppc64el (8c-2ubuntu11) ...
1079s Selecting previously unselected package libjs-jquery.
1079s Preparing to unpack .../26-libjs-jquery_3.6.1+dfsg+~3.5.14-1_all.deb ...
1079s Unpacking libjs-jquery (3.6.1+dfsg+~3.5.14-1) ...
1079s Selecting previously unselected package libjs-underscore.
1079s Preparing to unpack .../27-libjs-underscore_1.13.4~dfsg+~1.11.4-3_all.deb ...
1079s Unpacking libjs-underscore (1.13.4~dfsg+~1.11.4-3) ...
1080s Selecting previously unselected package libjs-sphinxdoc.
1080s Preparing to unpack .../28-libjs-sphinxdoc_8.1.3-5_all.deb ...
1080s Unpacking libjs-sphinxdoc (8.1.3-5) ...
1080s Selecting previously unselected package liblapack3:ppc64el.
1080s Preparing to unpack .../29-liblapack3_3.12.1-2_ppc64el.deb ...
1080s Unpacking liblapack3:ppc64el (3.12.1-2) ...
1080s Selecting previously unselected package liblcms2-2:ppc64el.
1080s Preparing to unpack .../30-liblcms2-2_2.16-2_ppc64el.deb ...
1080s Unpacking liblcms2-2:ppc64el (2.16-2) ...
1080s Selecting previously unselected package liblerc4:ppc64el.
1080s Preparing to unpack .../31-liblerc4_4.0.0+ds-5ubuntu1_ppc64el.deb ...
1080s Unpacking liblerc4:ppc64el (4.0.0+ds-5ubuntu1) ...
1080s Selecting previously unselected package libraqm0:ppc64el.
1080s Preparing to unpack .../32-libraqm0_0.10.2-1_ppc64el.deb ...
1080s Unpacking libraqm0:ppc64el (0.10.2-1) ...
1080s Selecting previously unselected package libsharpyuv0:ppc64el.
1080s Preparing to unpack .../33-libsharpyuv0_1.5.0-0.1_ppc64el.deb ...
1080s Unpacking libsharpyuv0:ppc64el (1.5.0-0.1) ...
1080s Selecting previously unselected package libjbig0:ppc64el.
1080s Preparing to unpack .../34-libjbig0_2.1-6.1ubuntu2_ppc64el.deb ...
1080s Unpacking libjbig0:ppc64el (2.1-6.1ubuntu2) ...
1080s Selecting previously unselected package libwebp7:ppc64el.
1080s Preparing to unpack .../35-libwebp7_1.5.0-0.1_ppc64el.deb ...
1080s Unpacking libwebp7:ppc64el (1.5.0-0.1) ...
1080s Selecting previously unselected package libtiff6:ppc64el.
1080s Preparing to unpack .../36-libtiff6_4.5.1+git230720-4ubuntu4_ppc64el.deb ...
1080s Unpacking libtiff6:ppc64el (4.5.1+git230720-4ubuntu4) ...
1080s Selecting previously unselected package libwebpdemux2:ppc64el.
1080s Preparing to unpack .../37-libwebpdemux2_1.5.0-0.1_ppc64el.deb ...
1080s Unpacking libwebpdemux2:ppc64el (1.5.0-0.1) ...
1080s Selecting previously unselected package libwebpmux3:ppc64el.
1080s Preparing to unpack .../38-libwebpmux3_1.5.0-0.1_ppc64el.deb ...
1080s Unpacking libwebpmux3:ppc64el (1.5.0-0.1) ...
1080s Selecting previously unselected package python-biopython-doc.
1080s Preparing to unpack .../39-python-biopython-doc_1.85+dfsg-2_all.deb ...
1080s Unpacking python-biopython-doc (1.85+dfsg-2) ...
1081s Selecting previously unselected package python3-all.
1081s Preparing to unpack .../40-python3-all_3.13.1-1~exp2_ppc64el.deb ...
1081s Unpacking python3-all (3.13.1-1~exp2) ...
1081s Selecting previously unselected package python3-numpy.
1081s Preparing to unpack .../41-python3-numpy_1%3a1.26.4+ds-13_ppc64el.deb ...
1081s Unpacking python3-numpy (1:1.26.4+ds-13) ...
1081s Selecting previously unselected package libopenjp2-7:ppc64el.
1081s Preparing to unpack .../42-libopenjp2-7_2.5.0-2ubuntu3_ppc64el.deb ...
1081s Unpacking libopenjp2-7:ppc64el (2.5.0-2ubuntu3) ...
1081s Selecting previously unselected package python3-pil:ppc64el.
1081s Preparing to unpack .../43-python3-pil_11.1.0-5_ppc64el.deb ...
1081s Unpacking python3-pil:ppc64el (11.1.0-5) ...
1081s Selecting previously unselected package python3-cairo.
1081s Preparing to unpack .../44-python3-cairo_1.26.1-2build1_ppc64el.deb ...
1081s Unpacking python3-cairo (1.26.1-2build1) ...
1081s Selecting previously unselected package python3-freetype.
1081s Preparing to unpack .../45-python3-freetype_2.5.1-1_all.deb ...
1081s Unpacking python3-freetype (2.5.1-1) ...
1081s Selecting previously unselected package python3-rlpycairo.
1081s Preparing to unpack .../46-python3-rlpycairo_0.3.0-3_all.deb ...
1081s Unpacking python3-rlpycairo (0.3.0-3) ...
1081s Selecting previously unselected package python3-reportlab.
1081s Preparing to unpack .../47-python3-reportlab_4.3.0-1_all.deb ...
1081s Unpacking python3-reportlab (4.3.0-1) ...
1081s Selecting previously unselected package xml-core.
1081s Preparing to unpack .../48-xml-core_0.19_all.deb ...
1081s Unpacking xml-core (0.19) ...
1081s Selecting previously unselected package w3c-sgml-lib.
1081s Preparing to unpack .../49-w3c-sgml-lib_1.3-3_all.deb ...
1081s Unpacking w3c-sgml-lib (1.3-3) ...
1082s Selecting previously unselected package python3-biopython.
1082s Preparing to unpack .../50-python3-biopython_1.85+dfsg-2_ppc64el.deb ...
1082s Unpacking python3-biopython (1.85+dfsg-2) ...
1082s Selecting previously unselected package python3-biopython-sql.
1082s Preparing to unpack .../51-python3-biopython-sql_1.85+dfsg-2_all.deb ...
1082s Unpacking python3-biopython-sql (1.85+dfsg-2) ...
1082s Setting up libgraphite2-3:ppc64el (1.3.14-2ubuntu1) ...
1082s Setting up liblcms2-2:ppc64el (2.16-2) ...
1082s Setting up libpixman-1-0:ppc64el (0.44.0-3) ...
1082s Setting up python3.12-minimal (3.12.9-1) ...
1084s Setting up libsharpyuv0:ppc64el (1.5.0-0.1) ...
1084s Setting up liblerc4:ppc64el (4.0.0+ds-5ubuntu1) ...
1084s Setting up libxrender1:ppc64el (1:0.9.10-1.1build1) ...
1084s Setting up libxcb-render0:ppc64el (1.17.0-2) ...
1084s Setting up python3.12 (3.12.9-1) ...
1086s Setting up x11-common (1:7.7+23ubuntu3) ...
1087s Setting up libdeflate0:ppc64el (1.23-1) ...
1087s Setting up python3-all (3.13.1-1~exp2) ...
1087s Setting up libxcb-shm0:ppc64el (1.17.0-2) ...
1087s Setting up libgomp1:ppc64el (15-20250213-1ubuntu1) ...
1087s Setting up python3-freetype (2.5.1-1) ...
1087s Setting up libjbig0:ppc64el (2.1-6.1ubuntu2) ...
1087s Setting up libfontenc1:ppc64el (1:1.1.8-1build1) ...
1087s Setting up libblas3:ppc64el (3.12.1-2) ...
1087s update-alternatives: using /usr/lib/powerpc64le-linux-gnu/blas/libblas.so.3 to provide /usr/lib/powerpc64le-linux-gnu/libblas.so.3 (libblas.so.3-powerpc64le-linux-gnu) in auto mode
1087s Setting up xfonts-encodings (1:1.0.5-0ubuntu2) ...
1087s Setting up libimagequant0:ppc64el (2.18.0-1build1) ...
1087s Setting up fonts-dejavu-mono (2.37-8) ...
1087s Setting up fonts-dejavu-core (2.37-8) ...
1087s Setting up libjpeg-turbo8:ppc64el (2.1.5-3ubuntu2) ...
1087s Setting up libgfortran5:ppc64el (15-20250213-1ubuntu1) ...
1087s Setting up libwebp7:ppc64el (1.5.0-0.1) ...
1087s Setting up libopenjp2-7:ppc64el (2.5.0-2ubuntu3) ...
1087s Setting up libharfbuzz0b:ppc64el (10.2.0-1) ...
1087s Setting up sgml-base (1.31) ...
1087s Setting up libjs-jquery (3.6.1+dfsg+~3.5.14-1) ...
1087s Setting up libwebpmux3:ppc64el (1.5.0-0.1) ...
1088s Setting up libjs-underscore (1.13.4~dfsg+~1.11.4-3) ...
1088s Setting up libjpeg8:ppc64el (8c-2ubuntu11) ...
1088s Setting up liblapack3:ppc64el (3.12.1-2) ...
1088s update-alternatives: using /usr/lib/powerpc64le-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/powerpc64le-linux-gnu/liblapack.so.3 (liblapack.so.3-powerpc64le-linux-gnu) in auto mode
1088s Setting up fontconfig-config (2.15.0-2ubuntu1) ...
1088s Setting up libwebpdemux2:ppc64el (1.5.0-0.1) ...
1088s Setting up xfonts-utils (1:7.7+7) ...
1088s Setting up libraqm0:ppc64el (0.10.2-1) ...
1088s Setting up python3-numpy (1:1.26.4+ds-13) ...
1092s Setting up libjs-sphinxdoc (8.1.3-5) ...
1092s Setting up python-biopython-doc (1.85+dfsg-2) ...
1092s Setting up libtiff6:ppc64el (4.5.1+git230720-4ubuntu4) ...
1092s Setting up xml-core (0.19) ...
1092s Setting up libfontconfig1:ppc64el (2.15.0-2ubuntu1) ...
1092s Setting up fonts-urw-base35 (20200910-8) ...
1093s Setting up libcairo2:ppc64el (1.18.2-2) ...
1093s Setting up python3-pil:ppc64el (11.1.0-5) ...
1094s Setting up python3-cairo (1.26.1-2build1) ...
1094s Setting up python3-rlpycairo (0.3.0-3) ...
1094s Setting up python3-reportlab (4.3.0-1) ...
1096s Processing triggers for libc-bin (2.40-4ubuntu1) ...
1096s Processing triggers for systemd (257.2-3ubuntu1) ...
1096s Processing triggers for man-db (2.13.0-1) ...
1099s Processing triggers for sgml-base (1.31) ...
1099s Setting up w3c-sgml-lib (1.3-3) ...
1139s Setting up python3-biopython (1.85+dfsg-2) ...
1142s Setting up python3-biopython-sql (1.85+dfsg-2) ...
1144s autopkgtest [17:59:01]: test dependencies: sh debian/tests/run-unit-test
1144s autopkgtest [17:59:01]: test dependencies: [-----------------------
1144s cp: cannot stat '/usr/share/libcifpp/mmcif_pdbx.dic': No such file or directory
1144s cp: cannot stat '/usr/share/libcifpp/mmcif_ma.dic': No such file or directory
1146s mkdir: created directory 'Bio'
1146s mkdir: created directory 'Bio/Align'
1146s mkdir: created directory 'Bio/Align/substitution_matrices'
1146s mkdir: created directory 'Bio/Align/substitution_matrices/data/'
1146s '/usr/lib/python3/dist-packages/Bio/Align/substitution_matrices/data/BENNER22' -> 'Bio/Align/substitution_matrices/data/BENNER22'
1146s '/usr/lib/python3/dist-packages/Bio/Align/substitution_matrices/data/BENNER6' -> 'Bio/Align/substitution_matrices/data/BENNER6'
1146s '/usr/lib/python3/dist-packages/Bio/Align/substitution_matrices/data/BENNER74' -> 'Bio/Align/substitution_matrices/data/BENNER74'
1146s '/usr/lib/python3/dist-packages/Bio/Align/substitution_matrices/data/BLASTN' -> 'Bio/Align/substitution_matrices/data/BLASTN'
1146s '/usr/lib/python3/dist-packages/Bio/Align/substitution_matrices/data/BLASTP' -> 'Bio/Align/substitution_matrices/data/BLASTP'
1146s '/usr/lib/python3/dist-packages/Bio/Align/substitution_matrices/data/BLOSUM45' -> 'Bio/Align/substitution_matrices/data/BLOSUM45'
1146s '/usr/lib/python3/dist-packages/Bio/Align/substitution_matrices/data/BLOSUM50' -> 'Bio/Align/substitution_matrices/data/BLOSUM50'
1146s '/usr/lib/python3/dist-packages/Bio/Align/substitution_matrices/data/BLOSUM62' -> 'Bio/Align/substitution_matrices/data/BLOSUM62'
1146s '/usr/lib/python3/dist-packages/Bio/Align/substitution_matrices/data/BLOSUM80' -> 'Bio/Align/substitution_matrices/data/BLOSUM80'
1146s '/usr/lib/python3/dist-packages/Bio/Align/substitution_matrices/data/BLOSUM90' -> 'Bio/Align/substitution_matrices/data/BLOSUM90'
1146s '/usr/lib/python3/dist-packages/Bio/Align/substitution_matrices/data/DAYHOFF' -> 'Bio/Align/substitution_matrices/data/DAYHOFF'
1146s '/usr/lib/python3/dist-packages/Bio/Align/substitution_matrices/data/FENG' -> 'Bio/Align/substitution_matrices/data/FENG'
1146s '/usr/lib/python3/dist-packages/Bio/Align/substitution_matrices/data/GENETIC' -> 'Bio/Align/substitution_matrices/data/GENETIC'
1146s '/usr/lib/python3/dist-packages/Bio/Align/substitution_matrices/data/GONNET1992' -> 'Bio/Align/substitution_matrices/data/GONNET1992'
1146s '/usr/lib/python3/dist-packages/Bio/Align/substitution_matrices/data/HOXD70' -> 'Bio/Align/substitution_matrices/data/HOXD70'
1146s '/usr/lib/python3/dist-packages/Bio/Align/substitution_matrices/data/JOHNSON' -> 'Bio/Align/substitution_matrices/data/JOHNSON'
1146s '/usr/lib/python3/dist-packages/Bio/Align/substitution_matrices/data/JONES' -> 'Bio/Align/substitution_matrices/data/JONES'
1146s '/usr/lib/python3/dist-packages/Bio/Align/substitution_matrices/data/LEVIN' -> 'Bio/Align/substitution_matrices/data/LEVIN'
1146s '/usr/lib/python3/dist-packages/Bio/Align/substitution_matrices/data/MCLACHLAN' -> 'Bio/Align/substitution_matrices/data/MCLACHLAN'
1146s '/usr/lib/python3/dist-packages/Bio/Align/substitution_matrices/data/MDM78' -> 'Bio/Align/substitution_matrices/data/MDM78'
1146s '/usr/lib/python3/dist-packages/Bio/Align/substitution_matrices/data/MEGABLAST' -> 'Bio/Align/substitution_matrices/data/MEGABLAST'
1146s '/usr/lib/python3/dist-packages/Bio/Align/substitution_matrices/data/NUC.4.4' -> 'Bio/Align/substitution_matrices/data/NUC.4.4'
1146s '/usr/lib/python3/dist-packages/Bio/Align/substitution_matrices/data/PAM250' -> 'Bio/Align/substitution_matrices/data/PAM250'
1146s '/usr/lib/python3/dist-packages/Bio/Align/substitution_matrices/data/PAM30' -> 'Bio/Align/substitution_matrices/data/PAM30'
1146s '/usr/lib/python3/dist-packages/Bio/Align/substitution_matrices/data/PAM70' -> 'Bio/Align/substitution_matrices/data/PAM70'
1146s '/usr/lib/python3/dist-packages/Bio/Align/substitution_matrices/data/RAO' -> 'Bio/Align/substitution_matrices/data/RAO'
1146s '/usr/lib/python3/dist-packages/Bio/Align/substitution_matrices/data/RISLER' -> 'Bio/Align/substitution_matrices/data/RISLER'
1146s '/usr/lib/python3/dist-packages/Bio/Align/substitution_matrices/data/SCHNEIDER' -> 'Bio/Align/substitution_matrices/data/SCHNEIDER'
1146s '/usr/lib/python3/dist-packages/Bio/Align/substitution_matrices/data/STR' -> 'Bio/Align/substitution_matrices/data/STR'
1146s '/usr/lib/python3/dist-packages/Bio/Align/substitution_matrices/data/TRANS' -> 'Bio/Align/substitution_matrices/data/TRANS'
1147s test_Ace ... ok
1147s test_Affy ... ok
1152s test_AlignIO ... ok
1152s test_AlignIO_ClustalIO ... ok
1152s test_AlignIO_EmbossIO ... ok
1152s test_AlignIO_FastaIO ... ok
1152s test_AlignIO_MauveIO ... ok
1152s test_AlignIO_PhylipIO ... ok
1152s test_AlignIO_convert ... ok
1152s test_AlignInfo ... ok
1152s test_Align_Alignment ... ok
1153s test_Align_a2m ... ok
1153s test_Align_bed ... ok
1153s test_Align_bigbed ... ok
1154s test_Align_bigmaf ... ok
1154s test_Align_bigpsl ... ok
1155s test_Align_chain ... ok
1155s test_Align_clustal ... ok
1159s test_Align_codonalign ... ok
1159s test_Align_emboss ... ok
1159s test_Align_exonerate ... ok
1159s test_Align_fasta ... ok
1160s test_Align_hhr ... ok
1161s test_Align_maf ... ok
1161s test_Align_mauve ... ok
1161s test_Align_msf ... ok
1161s test_Align_nexus ... ok
1161s test_Align_phylip ... ok
1162s test_Align_psl ... ok
1162s test_Align_sam ... ok
1165s test_Align_stockholm ... ok
1166s test_Align_tabular ... ok
1166s test_Application ... ok
1166s test_BioSQL_MySQLdb_online ... skipping. internet not available
1166s test_BioSQL_mysql_connector ... skipping. BioSQL test configuration file biosql.ini missing (see biosql.ini.sample)
1166s test_BioSQL_mysql_connector_online ... skipping. internet not available
1166s test_BioSQL_psycopg2_online ... skipping. internet not available
1172s test_BioSQL_sqlite3 ... ok
1172s test_BioSQL_sqlite3_online ... skipping. internet not available
1172s test_Blast_Record ... ok
1173s test_Blast_parser ... ok
1173s test_CAPS ... ok
1173s test_Chi2 ... ok
1173s test_ClustalOmega_tool ... skipping. Install clustalo if you want to use Clustal Omega from Biopython.
1173s test_Clustalw_tool ... skipping. Install clustalw or clustalw2 if you want to use it from Biopython.
1173s test_Cluster ... ok
1173s test_CodonTable ... ok
1173s test_ColorSpiral ... ok
1173s test_Compass ... ok
1176s test_Consensus ... ok
1176s test_Dialign_tool ... skipping. Install DIALIGN2-2 if you want to use the Bio.Align.Applications wrapper.
1176s test_EMBL_unittest ... ok
1176s test_Emboss ... skipping. $EMBOSS_ROOT='/usr/lib/emboss' which does not exist!
1176s test_EmbossPrimer ... ok
1180s test_Entrez ... ok
1180s test_Entrez_online ... skipping. internet not available
1181s test_Entrez_parser ... ok
1181s test_Enzyme ... ok
1181s test_ExPASy ... skipping. internet not available
1181s test_Fasttree_tool ... skipping. Install FastTree and correctly set the file path to the program if you want to use it from Biopython.
1181s test_File ... ok
1181s test_GenBank ... /usr/lib/python3/dist-packages/Bio/SeqIO/InsdcIO.py:600: BiopythonWarning: Annotation 'Sequence Read Archive: SRX001885, SRX001121, SRX001531, SRX001530, SRX001529' too long
1181s   warnings.warn(f"Annotation {text!r} too long", BiopythonWarning)
1181s ok
1184s test_GenomeDiagram ... Warn: Can't find .pfb for face 'Helvetica'
1187s ok
1188s test_GraphicsChromosome ... ok
1188s test_GraphicsDistribution ... ok
1189s test_GraphicsGeneral ... ok
1190s test_HMMCasino ... ok
1190s test_HMMGeneral ... ok
1190s test_KEGG ... ok
1190s test_KEGG_online ... skipping. internet not available
1197s test_KGML_graphics ... ok
1197s test_KGML_graphics_online ... skipping. internet not available
1199s test_KGML_nographics ... ok
1199s test_KeyWList ... ok
1199s test_LogisticRegression ... ok
1200s test_MafIO_index ... ok
1200s test_Mafft_tool ... skipping. Install MAFFT if you want to use the Bio.Align.Applications wrapper.
1201s test_MarkovModel ... ok
1201s test_Medline ... ok
1201s test_Muscle_tool ... skipping. Install MUSCLE if you want to use the Bio.Align.Applications wrapper.
1202s test_NCBIXML ... Exception ignored in: <generator object parse at 0x740986c95e70>
1202s Traceback (most recent call last):
1202s   File "/usr/lib/python3/dist-packages/Bio/Blast/NCBIXML.py", line 1319, in parse
1202s     expat_parser.Parse(NULL, True)
1202s xml.parsers.expat.ExpatError: unclosed token: line 320, column 0
1202s ok
1202s test_NCBI_BLAST_tools ... skipping. Install the NCBI BLAST+ command line tools if you want to use the Bio.Blast.Applications wrapper.
1202s test_NCBI_qblast ... ok
1202s test_NMR ... ok
1202s test_NaiveBayes ... ok
1202s test_Nexus ... ok
1202s test_PAML_baseml ... ok
1203s test_PAML_codeml ... ok
1203s test_PAML_yn00 ... ok
1208s test_PDB_CEAligner ... ok
1209s test_PDB_DSSP ... ok
1209s test_PDB_Dice ... ok
1209s test_PDB_Disordered ... ok
1209s test_PDB_Exposure ... ok
1210s test_PDB_FragmentMapper ... ok
1213s test_PDB_KDTree ... ok
1213s test_PDB_MMCIF2Dict ... ok
1213s test_PDB_MMCIFIO ... ok
1215s test_PDB_MMCIFParser ... ok
1215s test_PDB_NACCESS ... ok
1215s test_PDB_PDBIO ... ok
1215s test_PDB_PDBList ... skipping. internet not available
1225s test_PDB_PDBMLParser ... ok
1225s test_PDB_PDBParser ... ok
1225s test_PDB_PSEA ... skipping. Download and install psea from ftp://ftp.lmcp.jussieu.fr/pub/sincris/software/protein/p-sea/. Make sure that psea is on path
1225s test_PDB_Polypeptide ... ok
1225s test_PDB_QCPSuperimposer ... ok
1230s test_PDB_SASA ... ok
1231s test_PDB_SMCRA ... ok
1231s test_PDB_Selection ... ok
1231s test_PDB_StructureAlignment ... ok
1231s test_PDB_Superimposer ... ok
1231s test_PDB_alphafold_db ... skipping. internet not available
1231s test_PDB_binary_cif ... skipping. Error: Install msgpack to use Bio.PDB.binaryCIF (e.g. pip install msgpack)
1231s 
1231s test_PDB_internal_coords ... skipping. Error: Install mmtf to use Bio.PDB.mmtf (e.g. pip install mmtf-python)
1231s 
1231s test_PDB_parse_pdb_header ... ok
1231s test_PDB_vectors ... ok
1231s test_PQR ... ok
1232s test_Pathway ... ok
1232s test_Phd ... ok
1232s test_Phylo ... ok
1233s test_PhyloXML ... ok
1233s test_Phylo_CDAO ... skipping. Install RDFlib if you want to use the CDAO tree format.
1233s test_Phylo_NeXML ... ok
1233s test_Phylo_igraph ... skipping. Install igraph if you wish to use it with Bio.Phylo
1233s test_Phylo_matplotlib ... skipping. Install matplotlib if you want to use Bio.Phylo._utils.
1233s test_Phylo_networkx ... skipping. Install networkx if you wish to use it with Bio.Phylo
1233s test_PopGen_GenePop_nodepend ... ok
1233s test_Prank_tool ... skipping. Install PRANK if you want to use the Bio.Align.Applications wrapper.
1233s test_Probcons_tool ... skipping. Install PROBCONS if you want to use the Bio.Align.Applications wrapper.
1233s test_ProtParam ... ok
1234s test_RCSBFormats ... ok
1234s test_Restriction ... ok
1234s test_SCOP_Astral ... ok
1234s test_SCOP_Cla ... ok
1234s test_SCOP_Des ... ok
1234s test_SCOP_Dom ... ok
1234s test_SCOP_Hie ... ok
1234s test_SCOP_Raf ... ok
1234s test_SCOP_Residues ... ok
1234s test_SCOP_Scop ... ok
1234s test_SVDSuperimposer ... ok
1235s test_SearchIO_blast_tab ... ok
1235s test_SearchIO_blast_tab_index ... ok
1235s test_SearchIO_blast_xml ... ok
1236s test_SearchIO_blast_xml_index ... ok
1237s test_SearchIO_blat_psl ... ok
1237s test_SearchIO_blat_psl_index ... ok
1237s test_SearchIO_exonerate ... ok
1237s test_SearchIO_exonerate_text_index ... ok
1237s test_SearchIO_exonerate_vulgar_index ... ok
1237s test_SearchIO_fasta_m10 ... ok
1237s test_SearchIO_fasta_m10_index ... ok
1237s test_SearchIO_hhsuite2_text ... ok
1238s test_SearchIO_hmmer2_text ... ok
1238s test_SearchIO_hmmer2_text_index ... ok
1238s test_SearchIO_hmmer3_domtab ... ok
1238s test_SearchIO_hmmer3_domtab_index ... ok
1238s test_SearchIO_hmmer3_tab ... ok
1238s test_SearchIO_hmmer3_tab_index ... ok
1238s test_SearchIO_hmmer3_text ... ok
1238s test_SearchIO_hmmer3_text_index ... ok
1238s test_SearchIO_interproscan_xml ... ok
1238s test_SearchIO_model ... ok
1239s test_SearchIO_write ... ok
1239s test_SeqFeature ... ok
1262s test_SeqIO ... ok
1263s test_SeqIO_AbiIO ... ok
1263s test_SeqIO_FastaIO ... ok
1263s test_SeqIO_Gck ... ok
1263s test_SeqIO_Gfa ... ok
1263s test_SeqIO_Insdc ... ok
1263s test_SeqIO_NibIO ... ok
1266s test_SeqIO_PdbIO ... ok
1266s test_SeqIO_QualityIO ... ok
1266s test_SeqIO_SeqXML ... ok
1266s test_SeqIO_SffIO ... ok
1266s test_SeqIO_SnapGene ... ok
1268s test_SeqIO_TwoBitIO ... ok
1268s test_SeqIO_UniprotIO ... ok
1268s test_SeqIO_Xdna ... ok
1269s test_SeqIO_features ... ok
1292s test_SeqIO_index ... ok
1292s test_SeqIO_online ... skipping. internet not available
1293s test_SeqIO_write ... ok
1293s test_SeqRecord ... ok
1293s test_SeqUtils ... ok
1295s test_Seq_objs ... ok
1295s test_SwissProt ... ok
1295s test_TCoffee_tool ... skipping. Install TCOFFEE if you want to use the Bio.Align.Applications wrapper.
1295s test_TogoWS ... skipping. internet not available
1296s test_TreeConstruction ... ok
1296s test_Tutorial ... skipping. Could not find ../Doc/Tutorial/index.rst file
1296s test_UniGene ... ok
1296s test_UniProt ... skipping. internet not available
1296s test_UniProt_GOA ... ok
1296s test_align ... ok
1297s test_align_substitution_matrices ... ok
1300s test_bgzf ... ok
1300s test_cellosaurus ... ok
1308s test_codonalign ... ok
1308s test_geo ... ok
1308s test_kNN ... ok
1308s test_motifs ... ok
1308s test_motifs_online ... skipping. internet not available
1308s test_pairwise2 ... /usr/lib/python3/dist-packages/Bio/pairwise2.py:278: BiopythonDeprecationWarning: Bio.pairwise2 has been deprecated, and we intend to remove it in a future release of Biopython. As an alternative, please consider using Bio.Align.PairwiseAligner as a replacement, and contact the Biopython developers if you still need the Bio.pairwise2 module.
1308s   warnings.warn(
1308s ok
1309s test_pairwise2_no_C ... ok
1309s test_pairwise_aligner ... ok
1309s test_pairwise_alignment_map ... ok
1319s test_phenotype ... ok
1319s test_phenotype_fit ... skipping. Install SciPy if you want to use Bio.phenotype fit functionality.
1319s test_phyml_tool ... skipping. Couldn't find the PhyML software. Install PhyML 3.0 or later if you want to use the Bio.Phylo.Applications wrapper.
1319s test_prodoc ... ok
1320s test_prosite ... ok
1320s test_raxml_tool ... skipping. Install RAxML (binary raxmlHPC) if you want to test the Bio.Phylo.Applications wrapper.
1320s test_samtools_tool ... skipping. Install samtools and correctly set the file path to the program if you want to use it from Biopython
1320s test_seq ... ok
1320s test_translate ... ok
1320s Skipping any tests requiring internet access
1320s Python version: 3.12.9 (main, Feb  5 2025, 01:31:18) [GCC 14.2.0]
1320s Operating system: posix linux
1320s ----------------------------------------------------------------------
1320s Ran 218 tests in 172.805 seconds
1320s 
1320s sys:1: ResourceWarning: unclosed file <_io.TextIOWrapper name='Fasta/protein_lib.fa' mode='rt' encoding='UTF-8'>
1320s sys:1: ResourceWarning: unclosed file <_io.TextIOWrapper name='Fasta/nucleotide_lib.fa' mode='rt' encoding='UTF-8'>
1321s test_Ace ... ok
1321s test_Affy ... ok
1327s test_AlignIO ... ok
1327s test_AlignIO_ClustalIO ... ok
1327s test_AlignIO_EmbossIO ... ok
1327s test_AlignIO_FastaIO ... ok
1327s test_AlignIO_MauveIO ... ok
1327s test_AlignIO_PhylipIO ... ok
1327s test_AlignIO_convert ... ok
1327s test_AlignInfo ... ok
1328s test_Align_Alignment ... ok
1328s test_Align_a2m ... ok
1328s test_Align_bed ... ok
1328s test_Align_bigbed ... ok
1329s test_Align_bigmaf ... ok
1329s test_Align_bigpsl ... ok
1329s test_Align_chain ... ok
1329s test_Align_clustal ... ok
1335s test_Align_codonalign ... ok
1335s test_Align_emboss ... ok
1335s test_Align_exonerate ... ok
1335s test_Align_fasta ... ok
1336s test_Align_hhr ... ok
1337s test_Align_maf ... ok
1337s test_Align_mauve ... ok
1337s test_Align_msf ... ok
1337s test_Align_nexus ... ok
1338s test_Align_phylip ... ok
1339s test_Align_psl ... ok
1339s test_Align_sam ... ok
1342s test_Align_stockholm ... ok
1342s test_Align_tabular ... ok
1342s test_Application ... ok
1342s test_BioSQL_MySQLdb_online ... skipping. internet not available
1342s test_BioSQL_mysql_connector ... skipping. BioSQL test configuration file biosql.ini missing (see biosql.ini.sample)
1342s test_BioSQL_mysql_connector_online ... skipping. internet not available
1342s test_BioSQL_psycopg2_online ... skipping. internet not available
1350s test_BioSQL_sqlite3 ... ok
1350s test_BioSQL_sqlite3_online ... skipping. internet not available
1350s test_Blast_Record ... ok
1351s test_Blast_parser ... ok
1351s test_CAPS ... ok
1351s test_Chi2 ... ok
1351s test_ClustalOmega_tool ... skipping. Install clustalo if you want to use Clustal Omega from Biopython.
1351s test_Clustalw_tool ... skipping. Install clustalw or clustalw2 if you want to use it from Biopython.
1351s test_Cluster ... ok
1351s test_CodonTable ... ok
1351s test_ColorSpiral ... ok
1351s test_Compass ... ok
1354s test_Consensus ... ok
1354s test_Dialign_tool ... skipping. Install DIALIGN2-2 if you want to use the Bio.Align.Applications wrapper.
1354s test_EMBL_unittest ... ok
1354s test_Emboss ... skipping. $EMBOSS_ROOT='/usr/lib/emboss' which does not exist!
1354s test_EmbossPrimer ... ok
1358s test_Entrez ... ok
1358s test_Entrez_online ... skipping. internet not available
1359s test_Entrez_parser ... ok
1359s test_Enzyme ... ok
1359s test_ExPASy ... skipping. internet not available
1359s test_Fasttree_tool ... skipping. Install FastTree and correctly set the file path to the program if you want to use it from Biopython.
1359s test_File ... ok
1359s test_GenBank ... /usr/lib/python3/dist-packages/Bio/SeqIO/InsdcIO.py:600: BiopythonWarning: Annotation 'Sequence Read Archive: SRX001885, SRX001121, SRX001531, SRX001530, SRX001529' too long
1359s   warnings.warn(f"Annotation {text!r} too long", BiopythonWarning)
1359s ok
1362s test_GenomeDiagram ... Warn: Can't find .pfb for face 'Helvetica'
1366s ok
1367s test_GraphicsChromosome ... ok
1368s test_GraphicsDistribution ... ok
1369s test_GraphicsGeneral ... ok
1369s test_HMMCasino ... ok
1369s test_HMMGeneral ... ok
1369s test_KEGG ... ok
1369s test_KEGG_online ... skipping. internet not available
1377s test_KGML_graphics ... ok
1377s test_KGML_graphics_online ... skipping. internet not available
1378s test_KGML_nographics ... ok
1378s test_KeyWList ... ok
1379s test_LogisticRegression ... ok
1380s test_MafIO_index ... ok
1380s test_Mafft_tool ... skipping. Install MAFFT if you want to use the Bio.Align.Applications wrapper.
1381s test_MarkovModel ... ok
1381s test_Medline ... ok
1381s test_Muscle_tool ... skipping. Install MUSCLE if you want to use the Bio.Align.Applications wrapper.
1382s test_NCBIXML ... Exception ignored in: <generator object parse at 0x7498d1d7e650>
1382s Traceback (most recent call last):
1382s   File "/usr/lib/python3/dist-packages/Bio/Blast/NCBIXML.py", line 1319, in parse
1382s     expat_parser.Parse(NULL, True)
1382s xml.parsers.expat.ExpatError: unclosed token: line 320, column 0
1382s ok
1382s test_NCBI_BLAST_tools ... skipping. Install the NCBI BLAST+ command line tools if you want to use the Bio.Blast.Applications wrapper.
1382s test_NCBI_qblast ... ok
1382s test_NMR ... ok
1382s test_NaiveBayes ... ok
1382s test_Nexus ... ok
1382s test_PAML_baseml ... ok
1384s test_PAML_codeml ... ok
1384s test_PAML_yn00 ... ok
1390s test_PDB_CEAligner ... ok
1390s test_PDB_DSSP ... ok
1391s test_PDB_Dice ... ok
1391s test_PDB_Disordered ... ok
1391s test_PDB_Exposure ... ok
1391s test_PDB_FragmentMapper ... ok
1395s test_PDB_KDTree ... ok
1395s test_PDB_MMCIF2Dict ... ok
1395s test_PDB_MMCIFIO ... ok
1396s test_PDB_MMCIFParser ... ok
1396s test_PDB_NACCESS ... ok
1397s test_PDB_PDBIO ... ok
1397s test_PDB_PDBList ... skipping. internet not available
1406s test_PDB_PDBMLParser ... ok
1406s test_PDB_PDBParser ... ok
1406s test_PDB_PSEA ... skipping. Download and install psea from ftp://ftp.lmcp.jussieu.fr/pub/sincris/software/protein/p-sea/. Make sure that psea is on path
1406s test_PDB_Polypeptide ... ok
1406s test_PDB_QCPSuperimposer ... ok
1411s test_PDB_SASA ... ok
1412s test_PDB_SMCRA ... ok
1412s test_PDB_Selection ... ok
1413s test_PDB_StructureAlignment ... ok
1413s test_PDB_Superimposer ... ok
1413s test_PDB_alphafold_db ... skipping. internet not available
1413s test_PDB_binary_cif ... skipping. Error: Install msgpack to use Bio.PDB.binaryCIF (e.g. pip install msgpack)
1413s 
1413s test_PDB_internal_coords ... skipping. Error: Install mmtf to use Bio.PDB.mmtf (e.g. pip install mmtf-python)
1413s 
1413s test_PDB_parse_pdb_header ... ok
1413s test_PDB_vectors ... ok
1413s test_PQR ... ok
1413s test_Pathway ... ok
1413s test_Phd ... ok
1414s test_Phylo ... ok
1414s test_PhyloXML ... ok
1414s test_Phylo_CDAO ... skipping. Install RDFlib if you want to use the CDAO tree format.
1414s test_Phylo_NeXML ... ok
1414s test_Phylo_igraph ... skipping. Install igraph if you wish to use it with Bio.Phylo
1414s test_Phylo_matplotlib ... skipping. Install matplotlib if you want to use Bio.Phylo._utils.
1414s test_Phylo_networkx ... skipping. Install networkx if you wish to use it with Bio.Phylo
1415s test_PopGen_GenePop_nodepend ... ok
1415s test_Prank_tool ... skipping. Install PRANK if you want to use the Bio.Align.Applications wrapper.
1415s test_Probcons_tool ... skipping. Install PROBCONS if you want to use the Bio.Align.Applications wrapper.
1415s test_ProtParam ... ok
1415s test_RCSBFormats ... ok
1415s test_Restriction ... ok
1415s test_SCOP_Astral ... ok
1415s test_SCOP_Cla ... ok
1415s test_SCOP_Des ... ok
1416s test_SCOP_Dom ... ok
1416s test_SCOP_Hie ... ok
1416s test_SCOP_Raf ... ok
1416s test_SCOP_Residues ... ok
1416s test_SCOP_Scop ... ok
1416s test_SVDSuperimposer ... ok
1416s test_SearchIO_blast_tab ... ok
1416s test_SearchIO_blast_tab_index ... ok
1416s test_SearchIO_blast_xml ... ok
1418s test_SearchIO_blast_xml_index ... ok
1418s test_SearchIO_blat_psl ... ok
1418s test_SearchIO_blat_psl_index ... ok
1418s test_SearchIO_exonerate ... ok
1418s test_SearchIO_exonerate_text_index ... ok
1418s test_SearchIO_exonerate_vulgar_index ... ok
1418s test_SearchIO_fasta_m10 ... ok
1418s test_SearchIO_fasta_m10_index ... ok
1419s test_SearchIO_hhsuite2_text ... ok
1419s test_SearchIO_hmmer2_text ... ok
1419s test_SearchIO_hmmer2_text_index ... ok
1419s test_SearchIO_hmmer3_domtab ... ok
1419s test_SearchIO_hmmer3_domtab_index ... ok
1419s test_SearchIO_hmmer3_tab ... ok
1419s test_SearchIO_hmmer3_tab_index ... ok
1419s test_SearchIO_hmmer3_text ... ok
1419s test_SearchIO_hmmer3_text_index ... ok
1419s test_SearchIO_interproscan_xml ... ok
1419s test_SearchIO_model ... ok
1420s test_SearchIO_write ... ok
1420s test_SeqFeature ... ok
1443s test_SeqIO ... ok
1444s test_SeqIO_AbiIO ... ok
1444s test_SeqIO_FastaIO ... ok
1444s test_SeqIO_Gck ... ok
1444s test_SeqIO_Gfa ... ok
1444s test_SeqIO_Insdc ... ok
1444s test_SeqIO_NibIO ... ok
1447s test_SeqIO_PdbIO ... ok
1447s test_SeqIO_QualityIO ... ok
1447s test_SeqIO_SeqXML ... ok
1447s test_SeqIO_SffIO ... ok
1448s test_SeqIO_SnapGene ... ok
1450s test_SeqIO_TwoBitIO ... ok
1450s test_SeqIO_UniprotIO ... ok
1450s test_SeqIO_Xdna ... ok
1451s test_SeqIO_features ... ok
1480s test_SeqIO_index ... ok
1480s test_SeqIO_online ... skipping. internet not available
1480s test_SeqIO_write ... ok
1480s test_SeqRecord ... ok
1480s test_SeqUtils ... ok
1482s test_Seq_objs ... ok
1483s test_SwissProt ... ok
1483s test_TCoffee_tool ... skipping. Install TCOFFEE if you want to use the Bio.Align.Applications wrapper.
1483s test_TogoWS ... skipping. internet not available
1484s test_TreeConstruction ... ok
1484s test_Tutorial ... skipping. Could not find ../Doc/Tutorial/index.rst file
1484s test_UniGene ... ok
1484s test_UniProt ... skipping. internet not available
1484s test_UniProt_GOA ... ok
1484s test_align ... ok
1485s test_align_substitution_matrices ... ok
1489s test_bgzf ... ok
1489s test_cellosaurus ... ok
1496s test_codonalign ... ok
1496s test_geo ... ok
1496s test_kNN ... ok
1497s test_motifs ... ok
1497s test_motifs_online ... skipping. internet not available
1497s test_pairwise2 ... /usr/lib/python3/dist-packages/Bio/pairwise2.py:278: BiopythonDeprecationWarning: Bio.pairwise2 has been deprecated, and we intend to remove it in a future release of Biopython. As an alternative, please consider using Bio.Align.PairwiseAligner as a replacement, and contact the Biopython developers if you still need the Bio.pairwise2 module.
1497s   warnings.warn(
1497s ok
1497s test_pairwise2_no_C ... ok
1497s test_pairwise_aligner ... ok
1498s test_pairwise_alignment_map ... ok
1507s test_phenotype ... ok
1507s test_phenotype_fit ... skipping. Install SciPy if you want to use Bio.phenotype fit functionality.
1507s test_phyml_tool ... skipping. Couldn't find the PhyML software. Install PhyML 3.0 or later if you want to use the Bio.Phylo.Applications wrapper.
1508s test_prodoc ... ok
1508s test_prosite ... ok
1508s test_raxml_tool ... skipping. Install RAxML (binary raxmlHPC) if you want to test the Bio.Phylo.Applications wrapper.
1508s test_samtools_tool ... skipping. Install samtools and correctly set the file path to the program if you want to use it from Biopython
1508s test_seq ... ok
1508s test_translate ... ok
1508s Skipping any tests requiring internet access
1508s Python version: 3.13.2 (main, Feb  5 2025, 01:23:35) [GCC 14.2.0]
1508s Operating system: posix linux
1508s ----------------------------------------------------------------------
1508s Ran 218 tests in 187.278 seconds
1508s 
1508s <sys>:0: ResourceWarning: unclosed file <_io.TextIOWrapper name='Fasta/protein_lib.fa' mode='rt' encoding='UTF-8'>
1508s <sys>:0: ResourceWarning: unclosed file <_io.TextIOWrapper name='Fasta/nucleotide_lib.fa' mode='rt' encoding='UTF-8'>
1509s autopkgtest [18:05:06]: test dependencies: -----------------------]
1509s autopkgtest [18:05:06]: test dependencies:  - - - - - - - - - - results - - - - - - - - - -
1509s dependencies         PASS
1510s autopkgtest [18:05:07]: test full_suite: preparing testbed
1588s autopkgtest [18:06:25]: testbed dpkg architecture: ppc64el
1588s autopkgtest [18:06:25]: testbed apt version: 2.9.29
1588s autopkgtest [18:06:25]: @@@@@@@@@@@@@@@@@@@@ test bed setup
1589s autopkgtest [18:06:26]: testbed release detected to be: plucky
1589s autopkgtest [18:06:26]: updating testbed package index (apt update)
1590s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease [110 kB]
1590s Hit:2 http://ftpmaster.internal/ubuntu plucky InRelease
1590s Hit:3 http://ftpmaster.internal/ubuntu plucky-updates InRelease
1590s Hit:4 http://ftpmaster.internal/ubuntu plucky-security InRelease
1590s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/main Sources [73.1 kB]
1590s Get:6 http://ftpmaster.internal/ubuntu plucky-proposed/restricted Sources [3120 B]
1590s Get:7 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse Sources [14.5 kB]
1590s Get:8 http://ftpmaster.internal/ubuntu plucky-proposed/universe Sources [732 kB]
1590s Get:9 http://ftpmaster.internal/ubuntu plucky-proposed/main ppc64el Packages [96.5 kB]
1590s Get:10 http://ftpmaster.internal/ubuntu plucky-proposed/restricted ppc64el Packages [760 B]
1590s Get:11 http://ftpmaster.internal/ubuntu plucky-proposed/universe ppc64el Packages [667 kB]
1590s Get:12 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse ppc64el Packages [5760 B]
1591s Fetched 1703 kB in 1s (1599 kB/s)
1592s Reading package lists...
1592s Reading package lists...
1593s Building dependency tree...
1593s Reading state information...
1593s Calculating upgrade...
1593s The following NEW packages will be installed:
1593s   libapt-pkg7.0
1593s The following packages will be upgraded:
1593s   apt apt-utils dhcpcd-base iproute2 libgpgme11t64 liblsof0 libp11-kit0 lsof
1593s   rsyslog sysvinit-utils
1593s 10 upgraded, 1 newly installed, 0 to remove and 0 not upgraded.
1593s Need to get 5997 kB of archives.
1593s After this operation, 3932 kB of additional disk space will be used.
1593s Get:1 http://ftpmaster.internal/ubuntu plucky/main ppc64el sysvinit-utils ppc64el 3.14-1ubuntu1 [37.0 kB]
1593s Get:2 http://ftpmaster.internal/ubuntu plucky/main ppc64el libapt-pkg7.0 ppc64el 2.9.30 [1152 kB]
1594s Get:3 http://ftpmaster.internal/ubuntu plucky/main ppc64el apt ppc64el 2.9.30 [1439 kB]
1594s Get:4 http://ftpmaster.internal/ubuntu plucky/main ppc64el apt-utils ppc64el 2.9.30 [228 kB]
1594s Get:5 http://ftpmaster.internal/ubuntu plucky/main ppc64el dhcpcd-base ppc64el 1:10.1.0-7 [280 kB]
1594s Get:6 http://ftpmaster.internal/ubuntu plucky/main ppc64el iproute2 ppc64el 6.13.0-1ubuntu1 [1419 kB]
1594s Get:7 http://ftpmaster.internal/ubuntu plucky/main ppc64el libp11-kit0 ppc64el 0.25.5-2ubuntu3 [309 kB]
1594s Get:8 http://ftpmaster.internal/ubuntu plucky/main ppc64el rsyslog ppc64el 8.2412.0-2ubuntu1 [632 kB]
1594s Get:9 http://ftpmaster.internal/ubuntu plucky/main ppc64el lsof ppc64el 4.99.4+dfsg-1 [255 kB]
1594s Get:10 http://ftpmaster.internal/ubuntu plucky/main ppc64el liblsof0 ppc64el 4.99.4+dfsg-1 [68.4 kB]
1594s Get:11 http://ftpmaster.internal/ubuntu plucky/main ppc64el libgpgme11t64 ppc64el 1.24.2-1ubuntu1 [177 kB]
1594s Preconfiguring packages ...
1594s Fetched 5997 kB in 1s (7927 kB/s)
1595s (Reading database ... 
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(Reading database ... 95%
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(Reading database ... 106322 files and directories currently installed.)
1595s Preparing to unpack .../sysvinit-utils_3.14-1ubuntu1_ppc64el.deb ...
1595s Unpacking sysvinit-utils (3.14-1ubuntu1) over (3.08-6ubuntu3) ...
1595s Setting up sysvinit-utils (3.14-1ubuntu1) ...
1595s Selecting previously unselected package libapt-pkg7.0:ppc64el.
1595s (Reading database ... 
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(Reading database ... 106322 files and directories currently installed.)
1595s Preparing to unpack .../libapt-pkg7.0_2.9.30_ppc64el.deb ...
1595s Unpacking libapt-pkg7.0:ppc64el (2.9.30) ...
1595s Setting up libapt-pkg7.0:ppc64el (2.9.30) ...
1595s (Reading database ... 
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(Reading database ... 106371 files and directories currently installed.)
1595s Preparing to unpack .../apt_2.9.30_ppc64el.deb ...
1595s Unpacking apt (2.9.30) over (2.9.29) ...
1596s Setting up apt (2.9.30) ...
1596s (Reading database ... 
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(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 106371 files and directories currently installed.)
1596s Preparing to unpack .../0-apt-utils_2.9.30_ppc64el.deb ...
1596s Unpacking apt-utils (2.9.30) over (2.9.29) ...
1597s Preparing to unpack .../1-dhcpcd-base_1%3a10.1.0-7_ppc64el.deb ...
1597s Unpacking dhcpcd-base (1:10.1.0-7) over (1:10.1.0-6) ...
1597s Preparing to unpack .../2-iproute2_6.13.0-1ubuntu1_ppc64el.deb ...
1597s Unpacking iproute2 (6.13.0-1ubuntu1) over (6.10.0-2ubuntu1) ...
1597s Preparing to unpack .../3-libp11-kit0_0.25.5-2ubuntu3_ppc64el.deb ...
1597s Unpacking libp11-kit0:ppc64el (0.25.5-2ubuntu3) over (0.25.5-2ubuntu2) ...
1597s Preparing to unpack .../4-rsyslog_8.2412.0-2ubuntu1_ppc64el.deb ...
1597s Unpacking rsyslog (8.2412.0-2ubuntu1) over (8.2412.0-1ubuntu1) ...
1597s Preparing to unpack .../5-lsof_4.99.4+dfsg-1_ppc64el.deb ...
1597s Unpacking lsof (4.99.4+dfsg-1) over (4.99.3+dfsg-2) ...
1597s Preparing to unpack .../6-liblsof0_4.99.4+dfsg-1_ppc64el.deb ...
1597s Unpacking liblsof0 (4.99.4+dfsg-1) over (4.99.3+dfsg-2) ...
1597s Preparing to unpack .../7-libgpgme11t64_1.24.2-1ubuntu1_ppc64el.deb ...
1597s Unpacking libgpgme11t64:ppc64el (1.24.2-1ubuntu1) over (1.24.1-4ubuntu1) ...
1597s Setting up apt-utils (2.9.30) ...
1597s Setting up liblsof0 (4.99.4+dfsg-1) ...
1597s Setting up iproute2 (6.13.0-1ubuntu1) ...
1598s Setting up rsyslog (8.2412.0-2ubuntu1) ...
1598s info: The user `syslog' is already a member of `adm'.
1599s Setting up libp11-kit0:ppc64el (0.25.5-2ubuntu3) ...
1599s Setting up dhcpcd-base (1:10.1.0-7) ...
1599s Setting up lsof (4.99.4+dfsg-1) ...
1599s Setting up libgpgme11t64:ppc64el (1.24.2-1ubuntu1) ...
1599s Processing triggers for man-db (2.13.0-1) ...
1603s Processing triggers for libc-bin (2.40-4ubuntu1) ...
1605s Reading package lists...
1605s Building dependency tree...
1605s Reading state information...
1605s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
1605s autopkgtest [18:06:42]: upgrading testbed (apt dist-upgrade and autopurge)
1605s Reading package lists...
1606s Building dependency tree...
1606s Reading state information...
1606s Calculating upgrade...Starting pkgProblemResolver with broken count: 0
1606s Starting 2 pkgProblemResolver with broken count: 0
1606s Done
1607s Entering ResolveByKeep
1607s 
1607s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
1608s Reading package lists...
1608s Building dependency tree...
1608s Reading state information...
1608s Starting pkgProblemResolver with broken count: 0
1608s Starting 2 pkgProblemResolver with broken count: 0
1608s Done
1608s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
1609s autopkgtest [18:06:46]: rebooting testbed after setup commands that affected boot
1643s autopkgtest-virt-ssh: WARNING: ssh connection failed. Retrying in 3 seconds...
1657s Reading package lists...
1657s Building dependency tree...
1657s Reading state information...
1657s Starting pkgProblemResolver with broken count: 0
1657s Starting 2 pkgProblemResolver with broken count: 0
1657s Done
1658s The following NEW packages will be installed:
1658s   autoconf automake autopoint autotools-dev blt build-essential bwa clustalo
1658s   cpp cpp-14 cpp-14-powerpc64le-linux-gnu cpp-powerpc64le-linux-gnu debhelper
1658s   debugedit dh-autoreconf dh-python dh-strip-nondeterminism dialign
1658s   docutils-common dssp dwz emboss emboss-data emboss-lib fasttree flex
1658s   fontconfig-config fonts-dejavu-core fonts-dejavu-mono fonts-font-awesome
1658s   fonts-lato fonts-lmodern fonts-lyx fonts-urw-base35 g++ g++-14
1658s   g++-14-powerpc64le-linux-gnu g++-powerpc64le-linux-gnu gcc gcc-14
1658s   gcc-14-powerpc64le-linux-gnu gcc-powerpc64le-linux-gnu gettext ghostscript
1658s   hevea hicolor-icon-theme imagemagick imagemagick-7-common imagemagick-7.q16
1658s   intltool-debian libamd3 libaom3 libapache-pom-java libarchive-zip-perl
1658s   libargtable2-0 libarpack2t64 libasan8 libavahi-client3 libavahi-common-data
1658s   libavahi-common3 libblas3 libcairo2 libcc1-0 libcifpp-data libcifpp7
1658s   libcolamd3 libcommons-logging-java libcommons-parent-java libcups2t64
1658s   libde265-0 libdebhelper-perl libdeflate0 libexpat1-dev libfftw3-double3
1658s   libfile-stripnondeterminism-perl libfontbox-java libfontconfig1 libfontenc1
1658s   libgcc-14-dev libgd3 libgfortran5 libglpk40 libgomp1 libgraphite2-3
1658s   libgs-common libgs10 libgs10-common libharfbuzz0b libheif-plugin-aomdec
1658s   libheif-plugin-libde265 libheif1 libhpdf-2.3.0 libice6 libidn12
1658s   libigraph3t64 libijs-0.35 libimagequant0 libisl23 libitm1 libjbig0
1658s   libjbig2dec0 libjpeg-turbo8 libjpeg8 libjs-jquery libjs-jquery-ui
1658s   libjs-sphinxdoc libjs-underscore libjson-perl libkpathsea6 liblapack3
1658s   liblbfgsb0 liblcms2-2 liblerc4 liblqr-1-0 liblsan0 libltdl7
1658s   libmagickcore-7.q16-10 libmagickwand-7.q16-10 libmbedcrypto16 libmbedtls21
1658s   libmbedx509-7 libmpc3 libmpfi0 libmysqlclient21 libnetpbm11t64 libopenjp2-7
1658s   libpaper-utils libpaper2 libpdfbox-java libpixman-1-0 libplfit0 libpotrace0
1658s   libpq5 libptexenc1 libpython3-all-dev libpython3-dev libpython3.12-dev
1658s   libpython3.13-dev libqhull-r8.0 libquadmath0 libraqm0 libraw23t64
1658s   libsharpyuv0 libsm6 libstdc++-14-dev libsuitesparseconfig7 libsynctex2
1658s   libtcl8.6 libteckit0 libtexlua53-5 libtiff6 libtk8.6 libtool libtsan2
1658s   libubsan1 libwebp7 libwebpdemux2 libwebpmux3 libxaw7 libxcb-render0
1658s   libxcb-shm0 libxft2 libxi6 libxmu6 libxpm4 libxrender1 libxslt1.1 libxss1
1658s   libxt6t64 libzzip-0-13t64 m4 mafft mysql-common ncbi-blast+ ncbi-data netpbm
1658s   phylip po-debconf poppler-data prank preview-latex-style probcons
1658s   python-biopython-doc python-matplotlib-data python3-alabaster python3-all
1658s   python3-all-dev python3-biopython python3-biopython-sql python3-brotli
1658s   python3-cairo python3-contourpy python3-cycler python3-dateutil
1658s   python3-decorator python3-defusedxml python3-dev python3-docutils
1658s   python3-fonttools python3-freetype python3-fs python3-igraph
1658s   python3-imagesize python3-kiwisolver python3-lxml python3-lz4
1658s   python3-matplotlib python3-mmtf python3-mpmath python3-msgpack
1658s   python3-mysqldb python3-networkx python3-numpy python3-numpydoc
1658s   python3-packaging python3-pil python3-pil.imagetk python3-platformdirs
1658s   python3-pytz python3-rdflib python3-reportlab python3-rlpycairo
1658s   python3-roman python3-scipy python3-snowballstemmer python3-sphinx
1658s   python3-sphinx-rtd-theme python3-sphinxcontrib.jquery python3-sympy
1658s   python3-tabulate python3-texttable python3-tk python3-tz python3-ufolib2
1658s   python3.12 python3.12-dev python3.12-minimal python3.12-tk python3.13-dev
1658s   python3.13-tk sgml-base sphinx-common sphinx-rtd-theme-common t-coffee
1658s   t1utils tex-common texlive-base texlive-binaries texlive-fonts-recommended
1658s   texlive-latex-base texlive-latex-extra texlive-latex-recommended
1658s   texlive-pictures tk8.6-blt2.5 unicode-data w3c-sgml-lib wise wise-data
1658s   x11-common xdg-utils xfonts-encodings xfonts-utils xml-core zlib1g-dev
1658s 0 upgraded, 264 newly installed, 0 to remove and 0 not upgraded.
1658s Need to get 423 MB of archives.
1658s After this operation, 1981 MB of additional disk space will be used.
1658s Get:1 http://ftpmaster.internal/ubuntu plucky/main ppc64el python3.12-minimal ppc64el 3.12.9-1 [2465 kB]
1659s Get:2 http://ftpmaster.internal/ubuntu plucky/main ppc64el m4 ppc64el 1.4.19-5 [280 kB]
1659s Get:3 http://ftpmaster.internal/ubuntu plucky/main ppc64el flex ppc64el 2.6.4-8.2build1 [303 kB]
1659s Get:4 http://ftpmaster.internal/ubuntu plucky/main ppc64el fonts-lato all 2.015-1 [2781 kB]
1659s Get:5 http://ftpmaster.internal/ubuntu plucky/main ppc64el libgomp1 ppc64el 15-20250213-1ubuntu1 [168 kB]
1659s Get:6 http://ftpmaster.internal/ubuntu plucky/main ppc64el libfftw3-double3 ppc64el 3.3.10-2fakesync1build1 [443 kB]
1659s Get:7 http://ftpmaster.internal/ubuntu plucky/main ppc64el fonts-dejavu-mono all 2.37-8 [502 kB]
1659s Get:8 http://ftpmaster.internal/ubuntu plucky/main ppc64el fonts-dejavu-core all 2.37-8 [835 kB]
1659s Get:9 http://ftpmaster.internal/ubuntu plucky/main ppc64el libfontenc1 ppc64el 1:1.1.8-1build1 [15.8 kB]
1659s Get:10 http://ftpmaster.internal/ubuntu plucky/main ppc64el x11-common all 1:7.7+23ubuntu3 [21.7 kB]
1659s Get:11 http://ftpmaster.internal/ubuntu plucky/main ppc64el xfonts-encodings all 1:1.0.5-0ubuntu2 [578 kB]
1659s Get:12 http://ftpmaster.internal/ubuntu plucky/main ppc64el xfonts-utils ppc64el 1:7.7+7 [114 kB]
1659s Get:13 http://ftpmaster.internal/ubuntu plucky/main ppc64el fonts-urw-base35 all 20200910-8 [11.0 MB]
1659s Get:14 http://ftpmaster.internal/ubuntu plucky/main ppc64el fontconfig-config ppc64el 2.15.0-2ubuntu1 [37.5 kB]
1659s Get:15 http://ftpmaster.internal/ubuntu plucky/main ppc64el libfontconfig1 ppc64el 2.15.0-2ubuntu1 [188 kB]
1659s Get:16 http://ftpmaster.internal/ubuntu plucky/main ppc64el libsharpyuv0 ppc64el 1.5.0-0.1 [22.3 kB]
1659s Get:17 http://ftpmaster.internal/ubuntu plucky/main ppc64el libaom3 ppc64el 3.12.0-1 [2940 kB]
1659s Get:18 http://ftpmaster.internal/ubuntu plucky/main ppc64el libheif-plugin-aomdec ppc64el 1.19.5-1build1 [11.7 kB]
1659s Get:19 http://ftpmaster.internal/ubuntu plucky/main ppc64el libde265-0 ppc64el 1.0.15-1build4 [284 kB]
1659s Get:20 http://ftpmaster.internal/ubuntu plucky/main ppc64el libheif-plugin-libde265 ppc64el 1.19.5-1build1 [9188 B]
1659s Get:21 http://ftpmaster.internal/ubuntu plucky/main ppc64el libheif1 ppc64el 1.19.5-1build1 [452 kB]
1659s Get:22 http://ftpmaster.internal/ubuntu plucky/main ppc64el libjbig0 ppc64el 2.1-6.1ubuntu2 [35.9 kB]
1659s Get:23 http://ftpmaster.internal/ubuntu plucky/main ppc64el libjpeg-turbo8 ppc64el 2.1.5-3ubuntu2 [215 kB]
1659s Get:24 http://ftpmaster.internal/ubuntu plucky/main ppc64el libjpeg8 ppc64el 8c-2ubuntu11 [2148 B]
1659s Get:25 http://ftpmaster.internal/ubuntu plucky/main ppc64el liblcms2-2 ppc64el 2.16-2 [243 kB]
1659s Get:26 http://ftpmaster.internal/ubuntu plucky/universe ppc64el liblqr-1-0 ppc64el 0.4.2-2.1build2 [43.4 kB]
1659s Get:27 http://ftpmaster.internal/ubuntu plucky/main ppc64el libltdl7 ppc64el 2.5.4-3build1 [50.3 kB]
1659s Get:28 http://ftpmaster.internal/ubuntu plucky/main ppc64el libopenjp2-7 ppc64el 2.5.0-2ubuntu3 [247 kB]
1659s Get:29 http://ftpmaster.internal/ubuntu plucky/main ppc64el libraw23t64 ppc64el 0.21.3-1 [510 kB]
1659s Get:30 http://ftpmaster.internal/ubuntu plucky/main ppc64el libdeflate0 ppc64el 1.23-1 [63.4 kB]
1659s Get:31 http://ftpmaster.internal/ubuntu plucky/main ppc64el liblerc4 ppc64el 4.0.0+ds-5ubuntu1 [298 kB]
1659s Get:32 http://ftpmaster.internal/ubuntu plucky/main ppc64el libwebp7 ppc64el 1.5.0-0.1 [315 kB]
1659s Get:33 http://ftpmaster.internal/ubuntu plucky/main ppc64el libtiff6 ppc64el 4.5.1+git230720-4ubuntu4 [272 kB]
1659s Get:34 http://ftpmaster.internal/ubuntu plucky/main ppc64el libwebpdemux2 ppc64el 1.5.0-0.1 [14.6 kB]
1659s Get:35 http://ftpmaster.internal/ubuntu plucky/main ppc64el libwebpmux3 ppc64el 1.5.0-0.1 [31.1 kB]
1659s Get:36 http://ftpmaster.internal/ubuntu plucky/universe ppc64el imagemagick-7-common all 8:7.1.1.43+dfsg1-1 [69.7 kB]
1660s Get:37 http://ftpmaster.internal/ubuntu plucky/universe ppc64el libmagickcore-7.q16-10 ppc64el 8:7.1.1.43+dfsg1-1 [2474 kB]
1660s Get:38 http://ftpmaster.internal/ubuntu plucky/universe ppc64el libmagickwand-7.q16-10 ppc64el 8:7.1.1.43+dfsg1-1 [316 kB]
1660s Get:39 http://ftpmaster.internal/ubuntu plucky/main ppc64el poppler-data all 0.4.12-1 [2060 kB]
1660s Get:40 http://ftpmaster.internal/ubuntu plucky/main ppc64el sgml-base all 1.31 [11.4 kB]
1660s Get:41 http://ftpmaster.internal/ubuntu plucky/main ppc64el python3.12 ppc64el 3.12.9-1 [671 kB]
1660s Get:42 http://ftpmaster.internal/ubuntu plucky/main ppc64el autoconf all 2.72-3 [382 kB]
1660s Get:43 http://ftpmaster.internal/ubuntu plucky/main ppc64el autotools-dev all 20220109.1 [44.9 kB]
1660s Get:44 http://ftpmaster.internal/ubuntu plucky/main ppc64el automake all 1:1.17-3 [572 kB]
1660s Get:45 http://ftpmaster.internal/ubuntu plucky/main ppc64el autopoint all 0.23.1-1 [619 kB]
1660s Get:46 http://ftpmaster.internal/ubuntu plucky/main ppc64el libtcl8.6 ppc64el 8.6.16+dfsg-1 [1201 kB]
1660s Get:47 http://ftpmaster.internal/ubuntu plucky/main ppc64el libxrender1 ppc64el 1:0.9.10-1.1build1 [23.1 kB]
1660s Get:48 http://ftpmaster.internal/ubuntu plucky/main ppc64el libxft2 ppc64el 2.3.6-1build1 [61.5 kB]
1660s Get:49 http://ftpmaster.internal/ubuntu plucky/main ppc64el libxss1 ppc64el 1:1.2.3-1build3 [7980 B]
1660s Get:50 http://ftpmaster.internal/ubuntu plucky/main ppc64el libtk8.6 ppc64el 8.6.16-1 [946 kB]
1660s Get:51 http://ftpmaster.internal/ubuntu plucky/main ppc64el tk8.6-blt2.5 ppc64el 2.5.3+dfsg-7build1 [784 kB]
1660s Get:52 http://ftpmaster.internal/ubuntu plucky/main ppc64el blt ppc64el 2.5.3+dfsg-7build1 [4840 B]
1660s Get:53 http://ftpmaster.internal/ubuntu plucky/main ppc64el libisl23 ppc64el 0.27-1 [882 kB]
1660s Get:54 http://ftpmaster.internal/ubuntu plucky/main ppc64el libmpc3 ppc64el 1.3.1-1build2 [62.1 kB]
1660s Get:55 http://ftpmaster.internal/ubuntu plucky/main ppc64el cpp-14-powerpc64le-linux-gnu ppc64el 14.2.0-17ubuntu1 [10.5 MB]
1660s Get:56 http://ftpmaster.internal/ubuntu plucky/main ppc64el cpp-14 ppc64el 14.2.0-17ubuntu1 [1038 B]
1660s Get:57 http://ftpmaster.internal/ubuntu plucky/main ppc64el cpp-powerpc64le-linux-gnu ppc64el 4:14.2.0-1ubuntu1 [5566 B]
1660s Get:58 http://ftpmaster.internal/ubuntu plucky/main ppc64el cpp ppc64el 4:14.2.0-1ubuntu1 [22.4 kB]
1660s Get:59 http://ftpmaster.internal/ubuntu plucky/main ppc64el libcc1-0 ppc64el 15-20250213-1ubuntu1 [48.7 kB]
1660s Get:60 http://ftpmaster.internal/ubuntu plucky/main ppc64el libitm1 ppc64el 15-20250213-1ubuntu1 [32.4 kB]
1660s Get:61 http://ftpmaster.internal/ubuntu plucky/main ppc64el libasan8 ppc64el 15-20250213-1ubuntu1 [3009 kB]
1660s Get:62 http://ftpmaster.internal/ubuntu plucky/main ppc64el liblsan0 ppc64el 15-20250213-1ubuntu1 [1377 kB]
1660s Get:63 http://ftpmaster.internal/ubuntu plucky/main ppc64el libtsan2 ppc64el 15-20250213-1ubuntu1 [2734 kB]
1660s Get:64 http://ftpmaster.internal/ubuntu plucky/main ppc64el libubsan1 ppc64el 15-20250213-1ubuntu1 [1234 kB]
1660s Get:65 http://ftpmaster.internal/ubuntu plucky/main ppc64el libquadmath0 ppc64el 15-20250213-1ubuntu1 [160 kB]
1660s Get:66 http://ftpmaster.internal/ubuntu plucky/main ppc64el libgcc-14-dev ppc64el 14.2.0-17ubuntu1 [1620 kB]
1660s Get:67 http://ftpmaster.internal/ubuntu plucky/main ppc64el gcc-14-powerpc64le-linux-gnu ppc64el 14.2.0-17ubuntu1 [20.6 MB]
1661s Get:68 http://ftpmaster.internal/ubuntu plucky/main ppc64el gcc-14 ppc64el 14.2.0-17ubuntu1 [536 kB]
1661s Get:69 http://ftpmaster.internal/ubuntu plucky/main ppc64el gcc-powerpc64le-linux-gnu ppc64el 4:14.2.0-1ubuntu1 [1226 B]
1661s Get:70 http://ftpmaster.internal/ubuntu plucky/main ppc64el gcc ppc64el 4:14.2.0-1ubuntu1 [5012 B]
1661s Get:71 http://ftpmaster.internal/ubuntu plucky/main ppc64el libstdc++-14-dev ppc64el 14.2.0-17ubuntu1 [2677 kB]
1661s Get:72 http://ftpmaster.internal/ubuntu plucky/main ppc64el g++-14-powerpc64le-linux-gnu ppc64el 14.2.0-17ubuntu1 [12.0 MB]
1661s Get:73 http://ftpmaster.internal/ubuntu plucky/main ppc64el g++-14 ppc64el 14.2.0-17ubuntu1 [21.8 kB]
1661s Get:74 http://ftpmaster.internal/ubuntu plucky/main ppc64el g++-powerpc64le-linux-gnu ppc64el 4:14.2.0-1ubuntu1 [966 B]
1661s Get:75 http://ftpmaster.internal/ubuntu plucky/main ppc64el g++ ppc64el 4:14.2.0-1ubuntu1 [1088 B]
1661s Get:76 http://ftpmaster.internal/ubuntu plucky/main ppc64el build-essential ppc64el 12.10ubuntu1 [4936 B]
1661s Get:77 http://ftpmaster.internal/ubuntu plucky/universe ppc64el bwa ppc64el 0.7.18-1 [231 kB]
1661s Get:78 http://ftpmaster.internal/ubuntu plucky/universe ppc64el libargtable2-0 ppc64el 13-3 [18.7 kB]
1661s Get:79 http://ftpmaster.internal/ubuntu plucky/universe ppc64el clustalo ppc64el 1.2.4-8build1 [246 kB]
1661s Get:80 http://ftpmaster.internal/ubuntu plucky/main ppc64el libdebhelper-perl all 13.24.1ubuntu2 [95.4 kB]
1661s Get:81 http://ftpmaster.internal/ubuntu plucky/main ppc64el libtool all 2.5.4-3build1 [168 kB]
1661s Get:82 http://ftpmaster.internal/ubuntu plucky/main ppc64el dh-autoreconf all 20 [16.1 kB]
1661s Get:83 http://ftpmaster.internal/ubuntu plucky/main ppc64el libarchive-zip-perl all 1.68-1 [90.2 kB]
1661s Get:84 http://ftpmaster.internal/ubuntu plucky/main ppc64el libfile-stripnondeterminism-perl all 1.14.1-2 [20.3 kB]
1661s Get:85 http://ftpmaster.internal/ubuntu plucky/main ppc64el dh-strip-nondeterminism all 1.14.1-2 [5064 B]
1661s Get:86 http://ftpmaster.internal/ubuntu plucky/main ppc64el debugedit ppc64el 1:5.1-2 [52.4 kB]
1661s Get:87 http://ftpmaster.internal/ubuntu plucky/main ppc64el dwz ppc64el 0.15-1build6 [142 kB]
1661s Get:88 http://ftpmaster.internal/ubuntu plucky/main ppc64el gettext ppc64el 0.23.1-1 [1155 kB]
1661s Get:89 http://ftpmaster.internal/ubuntu plucky/main ppc64el intltool-debian all 0.35.0+20060710.6 [23.2 kB]
1661s Get:90 http://ftpmaster.internal/ubuntu plucky/main ppc64el po-debconf all 1.0.21+nmu1 [233 kB]
1661s Get:91 http://ftpmaster.internal/ubuntu plucky/main ppc64el debhelper all 13.24.1ubuntu2 [895 kB]
1661s Get:92 http://ftpmaster.internal/ubuntu plucky/universe ppc64el dh-python all 6.20250108 [117 kB]
1661s Get:93 http://ftpmaster.internal/ubuntu plucky/universe ppc64el dialign ppc64el 2.2.1-13 [158 kB]
1661s Get:94 http://ftpmaster.internal/ubuntu plucky/main ppc64el xml-core all 0.19 [20.3 kB]
1661s Get:95 http://ftpmaster.internal/ubuntu plucky/main ppc64el docutils-common all 0.21.2+dfsg-2 [131 kB]
1661s Get:96 http://ftpmaster.internal/ubuntu plucky/universe ppc64el libcifpp-data all 7.0.9-1 [481 kB]
1661s Get:97 http://ftpmaster.internal/ubuntu plucky/universe ppc64el libcifpp7 ppc64el 7.0.9-1 [1127 kB]
1661s Get:98 http://ftpmaster.internal/ubuntu plucky/universe ppc64el dssp ppc64el 4.4.10-1 [793 kB]
1661s Get:99 http://ftpmaster.internal/ubuntu plucky/main ppc64el libimagequant0 ppc64el 2.18.0-1build1 [43.2 kB]
1661s Get:100 http://ftpmaster.internal/ubuntu plucky/main ppc64el libgraphite2-3 ppc64el 1.3.14-2ubuntu1 [84.6 kB]
1661s Get:101 http://ftpmaster.internal/ubuntu plucky/main ppc64el libharfbuzz0b ppc64el 10.2.0-1 [598 kB]
1662s Get:102 http://ftpmaster.internal/ubuntu plucky/main ppc64el libraqm0 ppc64el 0.10.2-1 [19.2 kB]
1662s Get:103 http://ftpmaster.internal/ubuntu plucky/main ppc64el libxpm4 ppc64el 1:3.5.17-1build2 [49.9 kB]
1662s Get:104 http://ftpmaster.internal/ubuntu plucky/main ppc64el libgd3 ppc64el 2.3.3-12ubuntu3 [165 kB]
1662s Get:105 http://ftpmaster.internal/ubuntu plucky/universe ppc64el libhpdf-2.3.0 ppc64el 2.3.0+dfsg-1build3 [460 kB]
1662s Get:106 http://ftpmaster.internal/ubuntu plucky/main ppc64el mysql-common all 5.8+1.1.1 [6800 B]
1662s Get:107 http://ftpmaster.internal/ubuntu plucky/main ppc64el libmysqlclient21 ppc64el 8.0.40-1 [1294 kB]
1662s Get:108 http://ftpmaster.internal/ubuntu plucky/main ppc64el libpq5 ppc64el 17.3-3 [174 kB]
1662s Get:109 http://ftpmaster.internal/ubuntu plucky/universe ppc64el emboss-lib ppc64el 6.6.0+dfsg-12ubuntu2 [3460 kB]
1663s Get:110 http://ftpmaster.internal/ubuntu plucky/universe ppc64el emboss-data all 6.6.0+dfsg-12ubuntu2 [61.0 MB]
1671s Get:111 http://ftpmaster.internal/ubuntu plucky/universe ppc64el emboss ppc64el 6.6.0+dfsg-12ubuntu2 [1041 kB]
1671s Get:112 http://ftpmaster.internal/ubuntu plucky/main ppc64el fonts-font-awesome all 5.0.10+really4.7.0~dfsg-4.1 [516 kB]
1671s Get:113 http://ftpmaster.internal/ubuntu plucky/universe ppc64el fonts-lmodern all 2.005-1 [4799 kB]
1671s Get:114 http://ftpmaster.internal/ubuntu plucky/universe ppc64el fonts-lyx all 2.4.3-1 [171 kB]
1671s Get:115 http://ftpmaster.internal/ubuntu plucky/main ppc64el libgs-common all 10.04.0~dfsg1-2ubuntu1 [176 kB]
1671s Get:116 http://ftpmaster.internal/ubuntu plucky/main ppc64el libgs10-common all 10.04.0~dfsg1-2ubuntu1 [488 kB]
1672s Get:117 http://ftpmaster.internal/ubuntu plucky/main ppc64el libavahi-common-data ppc64el 0.8-14ubuntu1 [30.5 kB]
1672s Get:118 http://ftpmaster.internal/ubuntu plucky/main ppc64el libavahi-common3 ppc64el 0.8-14ubuntu1 [26.0 kB]
1672s Get:119 http://ftpmaster.internal/ubuntu plucky/main ppc64el libavahi-client3 ppc64el 0.8-14ubuntu1 [31.0 kB]
1672s Get:120 http://ftpmaster.internal/ubuntu plucky/main ppc64el libcups2t64 ppc64el 2.4.11-0ubuntu2 [347 kB]
1672s Get:121 http://ftpmaster.internal/ubuntu plucky/main ppc64el libidn12 ppc64el 1.42-3 [61.0 kB]
1672s Get:122 http://ftpmaster.internal/ubuntu plucky/main ppc64el libijs-0.35 ppc64el 0.35-15.1build1 [16.9 kB]
1672s Get:123 http://ftpmaster.internal/ubuntu plucky/main ppc64el libjbig2dec0 ppc64el 0.20-1build3 [90.9 kB]
1672s Get:124 http://ftpmaster.internal/ubuntu plucky/main ppc64el libpaper2 ppc64el 2.2.5-0.3 [18.0 kB]
1672s Get:125 http://ftpmaster.internal/ubuntu plucky/main ppc64el libice6 ppc64el 2:1.1.1-1 [49.9 kB]
1672s Get:126 http://ftpmaster.internal/ubuntu plucky/main ppc64el libsm6 ppc64el 2:1.2.4-1 [18.4 kB]
1672s Get:127 http://ftpmaster.internal/ubuntu plucky/main ppc64el libxt6t64 ppc64el 1:1.2.1-1.2build1 [202 kB]
1672s Get:128 http://ftpmaster.internal/ubuntu plucky/main ppc64el libgs10 ppc64el 10.04.0~dfsg1-2ubuntu1 [5015 kB]
1672s Get:129 http://ftpmaster.internal/ubuntu plucky/main ppc64el ghostscript ppc64el 10.04.0~dfsg1-2ubuntu1 [43.8 kB]
1672s Get:130 http://ftpmaster.internal/ubuntu plucky/universe ppc64el libnetpbm11t64 ppc64el 2:11.09.02-2 [142 kB]
1672s Get:131 http://ftpmaster.internal/ubuntu plucky/universe ppc64el netpbm ppc64el 2:11.09.02-2 [2579 kB]
1673s Get:132 http://ftpmaster.internal/ubuntu plucky/universe ppc64el tex-common all 6.18 [32.8 kB]
1673s Get:133 http://ftpmaster.internal/ubuntu plucky/main ppc64el libpaper-utils ppc64el 2.2.5-0.3 [15.6 kB]
1673s Get:134 http://ftpmaster.internal/ubuntu plucky/main ppc64el libkpathsea6 ppc64el 2024.20240313.70630+ds-5build2 [72.2 kB]
1673s Get:135 http://ftpmaster.internal/ubuntu plucky/main ppc64el libptexenc1 ppc64el 2024.20240313.70630+ds-5build2 [45.0 kB]
1673s Get:136 http://ftpmaster.internal/ubuntu plucky/main ppc64el libsynctex2 ppc64el 2024.20240313.70630+ds-5build2 [68.2 kB]
1673s Get:137 http://ftpmaster.internal/ubuntu plucky/main ppc64el libtexlua53-5 ppc64el 2024.20240313.70630+ds-5build2 [163 kB]
1673s Get:138 http://ftpmaster.internal/ubuntu plucky/main ppc64el t1utils ppc64el 1.41-4build3 [69.7 kB]
1673s Get:139 http://ftpmaster.internal/ubuntu plucky/main ppc64el libpixman-1-0 ppc64el 0.44.0-3 [334 kB]
1673s Get:140 http://ftpmaster.internal/ubuntu plucky/main ppc64el libxcb-render0 ppc64el 1.17.0-2 [17.2 kB]
1673s Get:141 http://ftpmaster.internal/ubuntu plucky/main ppc64el libxcb-shm0 ppc64el 1.17.0-2 [5980 B]
1673s Get:142 http://ftpmaster.internal/ubuntu plucky/main ppc64el libcairo2 ppc64el 1.18.2-2 [747 kB]
1673s Get:143 http://ftpmaster.internal/ubuntu plucky/universe ppc64el libmpfi0 ppc64el 1.5.4+ds-4 [38.6 kB]
1673s Get:144 http://ftpmaster.internal/ubuntu plucky/universe ppc64el libpotrace0 ppc64el 1.16-2build1 [23.0 kB]
1673s Get:145 http://ftpmaster.internal/ubuntu plucky/universe ppc64el libteckit0 ppc64el 2.5.12+ds1-1 [399 kB]
1673s Get:146 http://ftpmaster.internal/ubuntu plucky/main ppc64el libxmu6 ppc64el 2:1.1.3-3build2 [56.8 kB]
1673s Get:147 http://ftpmaster.internal/ubuntu plucky/main ppc64el libxaw7 ppc64el 2:1.0.16-1 [230 kB]
1673s Get:148 http://ftpmaster.internal/ubuntu plucky/main ppc64el libxi6 ppc64el 2:1.8.2-1 [37.9 kB]
1673s Get:149 http://ftpmaster.internal/ubuntu plucky/universe ppc64el libzzip-0-13t64 ppc64el 0.13.72+dfsg.1-1.2build1 [32.2 kB]
1673s Get:150 http://ftpmaster.internal/ubuntu plucky/universe ppc64el texlive-binaries ppc64el 2024.20240313.70630+ds-5build2 [12.4 MB]
1675s Get:151 http://ftpmaster.internal/ubuntu plucky/main ppc64el xdg-utils all 1.2.1-2ubuntu1 [66.0 kB]
1675s Get:152 http://ftpmaster.internal/ubuntu plucky/universe ppc64el texlive-base all 2024.20241115-1 [22.5 MB]
1678s Get:153 http://ftpmaster.internal/ubuntu plucky/main ppc64el hicolor-icon-theme all 0.18-2 [13.3 kB]
1678s Get:154 http://ftpmaster.internal/ubuntu plucky/universe ppc64el imagemagick-7.q16 ppc64el 8:7.1.1.43+dfsg1-1 [704 kB]
1678s Get:155 http://ftpmaster.internal/ubuntu plucky/universe ppc64el imagemagick ppc64el 8:7.1.1.43+dfsg1-1 [14.1 kB]
1678s Get:156 http://ftpmaster.internal/ubuntu plucky/universe ppc64el hevea ppc64el 2.36-2 [2153 kB]
1678s Get:157 http://ftpmaster.internal/ubuntu plucky/main ppc64el libsuitesparseconfig7 ppc64el 1:7.8.3+dfsg-3 [13.3 kB]
1678s Get:158 http://ftpmaster.internal/ubuntu plucky/universe ppc64el libamd3 ppc64el 1:7.8.3+dfsg-3 [37.3 kB]
1678s Get:159 http://ftpmaster.internal/ubuntu plucky/universe ppc64el libapache-pom-java all 33-2 [5874 B]
1678s Get:160 http://ftpmaster.internal/ubuntu plucky/main ppc64el libblas3 ppc64el 3.12.1-2 [239 kB]
1678s Get:161 http://ftpmaster.internal/ubuntu plucky/main ppc64el libgfortran5 ppc64el 15-20250213-1ubuntu1 [613 kB]
1678s Get:162 http://ftpmaster.internal/ubuntu plucky/main ppc64el liblapack3 ppc64el 3.12.1-2 [2813 kB]
1679s Get:163 http://ftpmaster.internal/ubuntu plucky/universe ppc64el libarpack2t64 ppc64el 3.9.1-4 [107 kB]
1679s Get:164 http://ftpmaster.internal/ubuntu plucky/main ppc64el libcolamd3 ppc64el 1:7.8.3+dfsg-3 [21.5 kB]
1679s Get:165 http://ftpmaster.internal/ubuntu plucky/universe ppc64el libcommons-parent-java all 56-1 [10.7 kB]
1679s Get:166 http://ftpmaster.internal/ubuntu plucky/universe ppc64el libcommons-logging-java all 1.3.0-1ubuntu1 [63.8 kB]
1679s Get:167 http://ftpmaster.internal/ubuntu plucky/main ppc64el libexpat1-dev ppc64el 2.6.4-1 [149 kB]
1679s Get:168 http://ftpmaster.internal/ubuntu plucky/universe ppc64el libglpk40 ppc64el 5.0-1build2 [467 kB]
1679s Get:169 http://ftpmaster.internal/ubuntu plucky/universe ppc64el libplfit0 ppc64el 0.9.4+ds-1ubuntu5 [36.1 kB]
1679s Get:170 http://ftpmaster.internal/ubuntu plucky/universe ppc64el libigraph3t64 ppc64el 0.10.15+ds-2 [1132 kB]
1679s Get:171 http://ftpmaster.internal/ubuntu plucky/main ppc64el libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [328 kB]
1679s Get:172 http://ftpmaster.internal/ubuntu plucky/universe ppc64el libjs-jquery-ui all 1.13.2+dfsg-1 [252 kB]
1679s Get:173 http://ftpmaster.internal/ubuntu plucky/main ppc64el libjs-underscore all 1.13.4~dfsg+~1.11.4-3 [118 kB]
1679s Get:174 http://ftpmaster.internal/ubuntu plucky-proposed/main ppc64el libjs-sphinxdoc all 8.1.3-5 [31.0 kB]
1679s Get:175 http://ftpmaster.internal/ubuntu plucky/main ppc64el libjson-perl all 4.10000-1 [81.9 kB]
1679s Get:176 http://ftpmaster.internal/ubuntu plucky/universe ppc64el liblbfgsb0 ppc64el 3.0+dfsg.4-1build1 [33.0 kB]
1679s Get:177 http://ftpmaster.internal/ubuntu plucky/universe ppc64el libmbedcrypto16 ppc64el 3.6.2-3ubuntu1 [293 kB]
1679s Get:178 http://ftpmaster.internal/ubuntu plucky/universe ppc64el libmbedx509-7 ppc64el 3.6.2-3ubuntu1 [40.1 kB]
1679s Get:179 http://ftpmaster.internal/ubuntu plucky/universe ppc64el libmbedtls21 ppc64el 3.6.2-3ubuntu1 [135 kB]
1679s Get:180 http://ftpmaster.internal/ubuntu plucky/main ppc64el zlib1g-dev ppc64el 1:1.3.dfsg+really1.3.1-1ubuntu1 [902 kB]
1679s Get:181 http://ftpmaster.internal/ubuntu plucky/main ppc64el libpython3.13-dev ppc64el 3.13.2-1 [5971 kB]
1680s Get:182 http://ftpmaster.internal/ubuntu plucky/main ppc64el libpython3-dev ppc64el 3.13.1-1~exp2 [10.5 kB]
1680s Get:183 http://ftpmaster.internal/ubuntu plucky/main ppc64el libpython3.12-dev ppc64el 3.12.9-1 [6140 kB]
1681s Get:184 http://ftpmaster.internal/ubuntu plucky/main ppc64el libpython3-all-dev ppc64el 3.13.1-1~exp2 [922 B]
1681s Get:185 http://ftpmaster.internal/ubuntu plucky/universe ppc64el libqhull-r8.0 ppc64el 2020.2-6build1 [225 kB]
1681s Get:186 http://ftpmaster.internal/ubuntu plucky/main ppc64el libxslt1.1 ppc64el 1.1.39-0exp1ubuntu2 [191 kB]
1681s Get:187 http://ftpmaster.internal/ubuntu plucky/universe ppc64el mafft ppc64el 7.505-1 [990 kB]
1681s Get:188 http://ftpmaster.internal/ubuntu plucky/universe ppc64el ncbi-data all 6.1.20170106+dfsg2-5 [3966 kB]
1681s Get:189 http://ftpmaster.internal/ubuntu plucky/universe ppc64el ncbi-blast+ ppc64el 2.16.0+ds-6build1 [16.1 MB]
1683s Get:190 http://ftpmaster.internal/ubuntu plucky/universe ppc64el phylip ppc64el 1:3.697+dfsg-4build1 [952 kB]
1684s Get:191 http://ftpmaster.internal/ubuntu plucky/universe ppc64el prank ppc64el 0.0.170427+dfsg-3 [353 kB]
1684s Get:192 http://ftpmaster.internal/ubuntu plucky/universe ppc64el preview-latex-style all 13.2-1 [347 kB]
1684s Get:193 http://ftpmaster.internal/ubuntu plucky/universe ppc64el probcons ppc64el 1.12-14 [174 kB]
1684s Get:194 http://ftpmaster.internal/ubuntu plucky/universe ppc64el python-biopython-doc all 1.85+dfsg-2 [18.2 MB]
1686s Get:195 http://ftpmaster.internal/ubuntu plucky/universe ppc64el python-matplotlib-data all 3.8.3-3ubuntu2 [2929 kB]
1687s Get:196 http://ftpmaster.internal/ubuntu plucky/main ppc64el python3-all ppc64el 3.13.1-1~exp2 [896 B]
1687s Get:197 http://ftpmaster.internal/ubuntu plucky/main ppc64el python3.13-dev ppc64el 3.13.2-1 [508 kB]
1687s Get:198 http://ftpmaster.internal/ubuntu plucky/main ppc64el python3-dev ppc64el 3.13.1-1~exp2 [26.7 kB]
1687s Get:199 http://ftpmaster.internal/ubuntu plucky/main ppc64el python3.12-dev ppc64el 3.12.9-1 [505 kB]
1687s Get:200 http://ftpmaster.internal/ubuntu plucky/main ppc64el python3-all-dev ppc64el 3.13.1-1~exp2 [918 B]
1687s Get:201 http://ftpmaster.internal/ubuntu plucky/main ppc64el python3-numpy ppc64el 1:1.26.4+ds-13 [5146 kB]
1687s Get:202 http://ftpmaster.internal/ubuntu plucky/main ppc64el python3.12-tk ppc64el 3.12.9-1 [116 kB]
1687s Get:203 http://ftpmaster.internal/ubuntu plucky/main ppc64el python3.13-tk ppc64el 3.13.2-1 [107 kB]
1688s Get:204 http://ftpmaster.internal/ubuntu plucky/main ppc64el python3-tk ppc64el 3.13.1-1 [9772 B]
1688s Get:205 http://ftpmaster.internal/ubuntu plucky/universe ppc64el python3-pil.imagetk ppc64el 11.1.0-5 [10.4 kB]
1688s Get:206 http://ftpmaster.internal/ubuntu plucky/main ppc64el python3-pil ppc64el 11.1.0-5 [618 kB]
1688s Get:207 http://ftpmaster.internal/ubuntu plucky/main ppc64el python3-cairo ppc64el 1.26.1-2build1 [150 kB]
1688s Get:208 http://ftpmaster.internal/ubuntu plucky/universe ppc64el python3-freetype all 2.5.1-1 [92.3 kB]
1688s Get:209 http://ftpmaster.internal/ubuntu plucky/universe ppc64el python3-rlpycairo all 0.3.0-3 [9130 B]
1688s Get:210 http://ftpmaster.internal/ubuntu plucky/universe ppc64el python3-reportlab all 4.3.0-1 [1137 kB]
1688s Get:211 http://ftpmaster.internal/ubuntu plucky/universe ppc64el w3c-sgml-lib all 1.3-3 [280 kB]
1688s Get:212 http://ftpmaster.internal/ubuntu plucky/universe ppc64el python3-biopython ppc64el 1.85+dfsg-2 [1771 kB]
1688s Get:213 http://ftpmaster.internal/ubuntu plucky/universe ppc64el python3-biopython-sql all 1.85+dfsg-2 [26.4 kB]
1688s Get:214 http://ftpmaster.internal/ubuntu plucky/universe ppc64el python3-brotli ppc64el 1.1.0-2build3 [423 kB]
1688s Get:215 http://ftpmaster.internal/ubuntu plucky/universe ppc64el python3-contourpy ppc64el 1.3.1-1 [260 kB]
1688s Get:216 http://ftpmaster.internal/ubuntu plucky/universe ppc64el python3-cycler all 0.12.1-1 [9716 B]
1688s Get:217 http://ftpmaster.internal/ubuntu plucky/main ppc64el python3-dateutil all 2.9.0-3 [80.2 kB]
1688s Get:218 http://ftpmaster.internal/ubuntu plucky/main ppc64el python3-decorator all 5.1.1-5 [10.1 kB]
1688s Get:219 http://ftpmaster.internal/ubuntu plucky/main ppc64el python3-defusedxml all 0.7.1-3 [42.2 kB]
1688s Get:220 http://ftpmaster.internal/ubuntu plucky/main ppc64el python3-roman all 5.0-1 [10.3 kB]
1688s Get:221 http://ftpmaster.internal/ubuntu plucky/main ppc64el python3-docutils all 0.21.2+dfsg-2 [409 kB]
1688s Get:222 http://ftpmaster.internal/ubuntu plucky/main ppc64el python3-pytz all 2025.1-3 [162 kB]
1688s Get:223 http://ftpmaster.internal/ubuntu plucky/main ppc64el python3-tz all 2025.1-3 [1866 B]
1688s Get:224 http://ftpmaster.internal/ubuntu plucky/main ppc64el python3-platformdirs all 4.3.6-1 [16.8 kB]
1688s Get:225 http://ftpmaster.internal/ubuntu plucky/universe ppc64el python3-fs all 2.4.16-6 [90.7 kB]
1688s Get:226 http://ftpmaster.internal/ubuntu plucky/main ppc64el python3-lxml ppc64el 5.3.1-1 [1752 kB]
1688s Get:227 http://ftpmaster.internal/ubuntu plucky/universe ppc64el python3-lz4 ppc64el 4.4.0+dfsg-1 [28.3 kB]
1688s Get:228 http://ftpmaster.internal/ubuntu plucky/universe ppc64el python3-scipy ppc64el 1.14.1-4ubuntu1 [22.7 MB]
1689s Get:229 http://ftpmaster.internal/ubuntu plucky/universe ppc64el python3-mpmath all 1.3.0-1 [425 kB]
1689s Get:230 http://ftpmaster.internal/ubuntu plucky/universe ppc64el python3-sympy all 1.13.3-1 [4228 kB]
1689s Get:231 http://ftpmaster.internal/ubuntu plucky/universe ppc64el python3-ufolib2 all 0.17.0+dfsg1-1 [33.5 kB]
1689s Get:232 http://ftpmaster.internal/ubuntu plucky/universe ppc64el unicode-data all 15.1.0-1 [8878 kB]
1689s Get:233 http://ftpmaster.internal/ubuntu plucky/universe ppc64el python3-fonttools ppc64el 4.55.3-2 [1722 kB]
1689s Get:234 http://ftpmaster.internal/ubuntu plucky/main ppc64el python3-imagesize all 1.4.1-1 [6844 B]
1689s Get:235 http://ftpmaster.internal/ubuntu plucky/universe ppc64el python3-kiwisolver ppc64el 1.4.7-3 [73.2 kB]
1690s Get:236 http://ftpmaster.internal/ubuntu plucky/main ppc64el python3-packaging all 24.2-1 [51.5 kB]
1690s Get:237 http://ftpmaster.internal/ubuntu plucky/universe ppc64el python3-matplotlib ppc64el 3.8.3-3ubuntu2 [4709 kB]
1690s Get:238 http://ftpmaster.internal/ubuntu plucky/main ppc64el python3-msgpack ppc64el 1.0.3-3build3 [110 kB]
1690s Get:239 http://ftpmaster.internal/ubuntu plucky/universe ppc64el python3-mmtf all 1.1.3-1 [16.2 kB]
1690s Get:240 http://ftpmaster.internal/ubuntu plucky/main ppc64el python3-mysqldb ppc64el 1.4.6-2build4 [52.7 kB]
1690s Get:241 http://ftpmaster.internal/ubuntu plucky/main ppc64el python3-networkx all 3.2.1-4ubuntu1 [11.5 MB]
1690s Get:242 http://ftpmaster.internal/ubuntu plucky-proposed/main ppc64el sphinx-common all 8.1.3-5 [663 kB]
1690s Get:243 http://ftpmaster.internal/ubuntu plucky/main ppc64el python3-alabaster all 0.7.16-0.1 [18.5 kB]
1690s Get:244 http://ftpmaster.internal/ubuntu plucky/main ppc64el python3-snowballstemmer all 2.2.0-4build1 [59.8 kB]
1690s Get:245 http://ftpmaster.internal/ubuntu plucky-proposed/main ppc64el python3-sphinx all 8.1.3-5 [474 kB]
1690s Get:246 http://ftpmaster.internal/ubuntu plucky/main ppc64el python3-tabulate all 0.9.0-1 [45.3 kB]
1690s Get:247 http://ftpmaster.internal/ubuntu plucky/universe ppc64el python3-numpydoc all 1.8.0-1 [52.4 kB]
1690s Get:248 http://ftpmaster.internal/ubuntu plucky/universe ppc64el python3-rdflib all 7.1.1-2 [426 kB]
1690s Get:249 http://ftpmaster.internal/ubuntu plucky/main ppc64el sphinx-rtd-theme-common all 3.0.2+dfsg-2 [1014 kB]
1690s Get:250 http://ftpmaster.internal/ubuntu plucky/universe ppc64el python3-sphinxcontrib.jquery all 4.1-5 [6678 B]
1690s Get:251 http://ftpmaster.internal/ubuntu plucky/universe ppc64el python3-sphinx-rtd-theme all 3.0.2+dfsg-2 [23.5 kB]
1690s Get:252 http://ftpmaster.internal/ubuntu plucky/universe ppc64el python3-texttable all 1.7.0-1 [11.2 kB]
1690s Get:253 http://ftpmaster.internal/ubuntu plucky/universe ppc64el t-coffee ppc64el 13.45.0.4846264+really13.41.0.28bdc39+dfsg-1 [1022 kB]
1690s Get:254 http://ftpmaster.internal/ubuntu plucky/universe ppc64el texlive-fonts-recommended all 2024.20241115-1 [4973 kB]
1690s Get:255 http://ftpmaster.internal/ubuntu plucky/universe ppc64el texlive-latex-base all 2024.20241115-1 [1260 kB]
1690s Get:256 http://ftpmaster.internal/ubuntu plucky/universe ppc64el libfontbox-java all 1:1.8.16-5 [208 kB]
1690s Get:257 http://ftpmaster.internal/ubuntu plucky/universe ppc64el libpdfbox-java all 1:1.8.16-5 [5521 kB]
1690s Get:258 http://ftpmaster.internal/ubuntu plucky/universe ppc64el texlive-latex-recommended all 2024.20241115-1 [8739 kB]
1691s Get:259 http://ftpmaster.internal/ubuntu plucky/universe ppc64el texlive-pictures all 2024.20241115-1 [17.0 MB]
1691s Get:260 http://ftpmaster.internal/ubuntu plucky/universe ppc64el texlive-latex-extra all 2024.20250114-1 [24.3 MB]
1692s Get:261 http://ftpmaster.internal/ubuntu plucky/universe ppc64el wise-data all 2.4.1-25 [83.0 kB]
1692s Get:262 http://ftpmaster.internal/ubuntu plucky/universe ppc64el wise ppc64el 2.4.1-25 [1081 kB]
1692s Get:263 http://ftpmaster.internal/ubuntu plucky/universe ppc64el fasttree ppc64el 2.1.11-2 [218 kB]
1692s Get:264 http://ftpmaster.internal/ubuntu plucky/universe ppc64el python3-igraph ppc64el 0.11.8+ds-1build1 [360 kB]
1693s Preconfiguring packages ...
1693s Fetched 423 MB in 34s (12.6 MB/s)
1693s Selecting previously unselected package python3.12-minimal.
1693s (Reading database ... 
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(Reading database ... 65%
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(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 106372 files and directories currently installed.)
1693s Preparing to unpack .../000-python3.12-minimal_3.12.9-1_ppc64el.deb ...
1693s Unpacking python3.12-minimal (3.12.9-1) ...
1694s Selecting previously unselected package m4.
1694s Preparing to unpack .../001-m4_1.4.19-5_ppc64el.deb ...
1694s Unpacking m4 (1.4.19-5) ...
1694s Selecting previously unselected package flex.
1694s Preparing to unpack .../002-flex_2.6.4-8.2build1_ppc64el.deb ...
1694s Unpacking flex (2.6.4-8.2build1) ...
1694s Selecting previously unselected package fonts-lato.
1694s Preparing to unpack .../003-fonts-lato_2.015-1_all.deb ...
1694s Unpacking fonts-lato (2.015-1) ...
1694s Selecting previously unselected package libgomp1:ppc64el.
1694s Preparing to unpack .../004-libgomp1_15-20250213-1ubuntu1_ppc64el.deb ...
1694s Unpacking libgomp1:ppc64el (15-20250213-1ubuntu1) ...
1694s Selecting previously unselected package libfftw3-double3:ppc64el.
1694s Preparing to unpack .../005-libfftw3-double3_3.3.10-2fakesync1build1_ppc64el.deb ...
1694s Unpacking libfftw3-double3:ppc64el (3.3.10-2fakesync1build1) ...
1694s Selecting previously unselected package fonts-dejavu-mono.
1694s Preparing to unpack .../006-fonts-dejavu-mono_2.37-8_all.deb ...
1694s Unpacking fonts-dejavu-mono (2.37-8) ...
1694s Selecting previously unselected package fonts-dejavu-core.
1694s Preparing to unpack .../007-fonts-dejavu-core_2.37-8_all.deb ...
1694s Unpacking fonts-dejavu-core (2.37-8) ...
1694s Selecting previously unselected package libfontenc1:ppc64el.
1694s Preparing to unpack .../008-libfontenc1_1%3a1.1.8-1build1_ppc64el.deb ...
1694s Unpacking libfontenc1:ppc64el (1:1.1.8-1build1) ...
1694s Selecting previously unselected package x11-common.
1694s Preparing to unpack .../009-x11-common_1%3a7.7+23ubuntu3_all.deb ...
1694s Unpacking x11-common (1:7.7+23ubuntu3) ...
1694s Selecting previously unselected package xfonts-encodings.
1694s Preparing to unpack .../010-xfonts-encodings_1%3a1.0.5-0ubuntu2_all.deb ...
1694s Unpacking xfonts-encodings (1:1.0.5-0ubuntu2) ...
1694s Selecting previously unselected package xfonts-utils.
1694s Preparing to unpack .../011-xfonts-utils_1%3a7.7+7_ppc64el.deb ...
1694s Unpacking xfonts-utils (1:7.7+7) ...
1694s Selecting previously unselected package fonts-urw-base35.
1694s Preparing to unpack .../012-fonts-urw-base35_20200910-8_all.deb ...
1694s Unpacking fonts-urw-base35 (20200910-8) ...
1695s Selecting previously unselected package fontconfig-config.
1695s Preparing to unpack .../013-fontconfig-config_2.15.0-2ubuntu1_ppc64el.deb ...
1695s Unpacking fontconfig-config (2.15.0-2ubuntu1) ...
1695s Selecting previously unselected package libfontconfig1:ppc64el.
1695s Preparing to unpack .../014-libfontconfig1_2.15.0-2ubuntu1_ppc64el.deb ...
1695s Unpacking libfontconfig1:ppc64el (2.15.0-2ubuntu1) ...
1695s Selecting previously unselected package libsharpyuv0:ppc64el.
1695s Preparing to unpack .../015-libsharpyuv0_1.5.0-0.1_ppc64el.deb ...
1695s Unpacking libsharpyuv0:ppc64el (1.5.0-0.1) ...
1695s Selecting previously unselected package libaom3:ppc64el.
1695s Preparing to unpack .../016-libaom3_3.12.0-1_ppc64el.deb ...
1695s Unpacking libaom3:ppc64el (3.12.0-1) ...
1695s Selecting previously unselected package libheif-plugin-aomdec:ppc64el.
1695s Preparing to unpack .../017-libheif-plugin-aomdec_1.19.5-1build1_ppc64el.deb ...
1695s Unpacking libheif-plugin-aomdec:ppc64el (1.19.5-1build1) ...
1695s Selecting previously unselected package libde265-0:ppc64el.
1695s Preparing to unpack .../018-libde265-0_1.0.15-1build4_ppc64el.deb ...
1695s Unpacking libde265-0:ppc64el (1.0.15-1build4) ...
1695s Selecting previously unselected package libheif-plugin-libde265:ppc64el.
1695s Preparing to unpack .../019-libheif-plugin-libde265_1.19.5-1build1_ppc64el.deb ...
1695s Unpacking libheif-plugin-libde265:ppc64el (1.19.5-1build1) ...
1695s Selecting previously unselected package libheif1:ppc64el.
1695s Preparing to unpack .../020-libheif1_1.19.5-1build1_ppc64el.deb ...
1695s Unpacking libheif1:ppc64el (1.19.5-1build1) ...
1695s Selecting previously unselected package libjbig0:ppc64el.
1695s Preparing to unpack .../021-libjbig0_2.1-6.1ubuntu2_ppc64el.deb ...
1695s Unpacking libjbig0:ppc64el (2.1-6.1ubuntu2) ...
1695s Selecting previously unselected package libjpeg-turbo8:ppc64el.
1695s Preparing to unpack .../022-libjpeg-turbo8_2.1.5-3ubuntu2_ppc64el.deb ...
1695s Unpacking libjpeg-turbo8:ppc64el (2.1.5-3ubuntu2) ...
1695s Selecting previously unselected package libjpeg8:ppc64el.
1695s Preparing to unpack .../023-libjpeg8_8c-2ubuntu11_ppc64el.deb ...
1695s Unpacking libjpeg8:ppc64el (8c-2ubuntu11) ...
1695s Selecting previously unselected package liblcms2-2:ppc64el.
1695s Preparing to unpack .../024-liblcms2-2_2.16-2_ppc64el.deb ...
1695s Unpacking liblcms2-2:ppc64el (2.16-2) ...
1695s Selecting previously unselected package liblqr-1-0:ppc64el.
1695s Preparing to unpack .../025-liblqr-1-0_0.4.2-2.1build2_ppc64el.deb ...
1695s Unpacking liblqr-1-0:ppc64el (0.4.2-2.1build2) ...
1695s Selecting previously unselected package libltdl7:ppc64el.
1695s Preparing to unpack .../026-libltdl7_2.5.4-3build1_ppc64el.deb ...
1695s Unpacking libltdl7:ppc64el (2.5.4-3build1) ...
1695s Selecting previously unselected package libopenjp2-7:ppc64el.
1695s Preparing to unpack .../027-libopenjp2-7_2.5.0-2ubuntu3_ppc64el.deb ...
1695s Unpacking libopenjp2-7:ppc64el (2.5.0-2ubuntu3) ...
1696s Selecting previously unselected package libraw23t64:ppc64el.
1696s Preparing to unpack .../028-libraw23t64_0.21.3-1_ppc64el.deb ...
1696s Unpacking libraw23t64:ppc64el (0.21.3-1) ...
1696s Selecting previously unselected package libdeflate0:ppc64el.
1696s Preparing to unpack .../029-libdeflate0_1.23-1_ppc64el.deb ...
1696s Unpacking libdeflate0:ppc64el (1.23-1) ...
1696s Selecting previously unselected package liblerc4:ppc64el.
1696s Preparing to unpack .../030-liblerc4_4.0.0+ds-5ubuntu1_ppc64el.deb ...
1696s Unpacking liblerc4:ppc64el (4.0.0+ds-5ubuntu1) ...
1696s Selecting previously unselected package libwebp7:ppc64el.
1696s Preparing to unpack .../031-libwebp7_1.5.0-0.1_ppc64el.deb ...
1696s Unpacking libwebp7:ppc64el (1.5.0-0.1) ...
1696s Selecting previously unselected package libtiff6:ppc64el.
1696s Preparing to unpack .../032-libtiff6_4.5.1+git230720-4ubuntu4_ppc64el.deb ...
1696s Unpacking libtiff6:ppc64el (4.5.1+git230720-4ubuntu4) ...
1696s Selecting previously unselected package libwebpdemux2:ppc64el.
1696s Preparing to unpack .../033-libwebpdemux2_1.5.0-0.1_ppc64el.deb ...
1696s Unpacking libwebpdemux2:ppc64el (1.5.0-0.1) ...
1696s Selecting previously unselected package libwebpmux3:ppc64el.
1696s Preparing to unpack .../034-libwebpmux3_1.5.0-0.1_ppc64el.deb ...
1696s Unpacking libwebpmux3:ppc64el (1.5.0-0.1) ...
1696s Selecting previously unselected package imagemagick-7-common.
1696s Preparing to unpack .../035-imagemagick-7-common_8%3a7.1.1.43+dfsg1-1_all.deb ...
1696s Unpacking imagemagick-7-common (8:7.1.1.43+dfsg1-1) ...
1696s Selecting previously unselected package libmagickcore-7.q16-10:ppc64el.
1696s Preparing to unpack .../036-libmagickcore-7.q16-10_8%3a7.1.1.43+dfsg1-1_ppc64el.deb ...
1696s Unpacking libmagickcore-7.q16-10:ppc64el (8:7.1.1.43+dfsg1-1) ...
1696s Selecting previously unselected package libmagickwand-7.q16-10:ppc64el.
1696s Preparing to unpack .../037-libmagickwand-7.q16-10_8%3a7.1.1.43+dfsg1-1_ppc64el.deb ...
1696s Unpacking libmagickwand-7.q16-10:ppc64el (8:7.1.1.43+dfsg1-1) ...
1696s Selecting previously unselected package poppler-data.
1696s Preparing to unpack .../038-poppler-data_0.4.12-1_all.deb ...
1696s Unpacking poppler-data (0.4.12-1) ...
1696s Selecting previously unselected package sgml-base.
1696s Preparing to unpack .../039-sgml-base_1.31_all.deb ...
1696s Unpacking sgml-base (1.31) ...
1696s Selecting previously unselected package python3.12.
1696s Preparing to unpack .../040-python3.12_3.12.9-1_ppc64el.deb ...
1696s Unpacking python3.12 (3.12.9-1) ...
1696s Selecting previously unselected package autoconf.
1696s Preparing to unpack .../041-autoconf_2.72-3_all.deb ...
1696s Unpacking autoconf (2.72-3) ...
1696s Selecting previously unselected package autotools-dev.
1696s Preparing to unpack .../042-autotools-dev_20220109.1_all.deb ...
1696s Unpacking autotools-dev (20220109.1) ...
1696s Selecting previously unselected package automake.
1696s Preparing to unpack .../043-automake_1%3a1.17-3_all.deb ...
1696s Unpacking automake (1:1.17-3) ...
1696s Selecting previously unselected package autopoint.
1696s Preparing to unpack .../044-autopoint_0.23.1-1_all.deb ...
1696s Unpacking autopoint (0.23.1-1) ...
1696s Selecting previously unselected package libtcl8.6:ppc64el.
1696s Preparing to unpack .../045-libtcl8.6_8.6.16+dfsg-1_ppc64el.deb ...
1696s Unpacking libtcl8.6:ppc64el (8.6.16+dfsg-1) ...
1697s Selecting previously unselected package libxrender1:ppc64el.
1697s Preparing to unpack .../046-libxrender1_1%3a0.9.10-1.1build1_ppc64el.deb ...
1697s Unpacking libxrender1:ppc64el (1:0.9.10-1.1build1) ...
1697s Selecting previously unselected package libxft2:ppc64el.
1697s Preparing to unpack .../047-libxft2_2.3.6-1build1_ppc64el.deb ...
1697s Unpacking libxft2:ppc64el (2.3.6-1build1) ...
1697s Selecting previously unselected package libxss1:ppc64el.
1697s Preparing to unpack .../048-libxss1_1%3a1.2.3-1build3_ppc64el.deb ...
1697s Unpacking libxss1:ppc64el (1:1.2.3-1build3) ...
1697s Selecting previously unselected package libtk8.6:ppc64el.
1697s Preparing to unpack .../049-libtk8.6_8.6.16-1_ppc64el.deb ...
1697s Unpacking libtk8.6:ppc64el (8.6.16-1) ...
1697s Selecting previously unselected package tk8.6-blt2.5.
1697s Preparing to unpack .../050-tk8.6-blt2.5_2.5.3+dfsg-7build1_ppc64el.deb ...
1697s Unpacking tk8.6-blt2.5 (2.5.3+dfsg-7build1) ...
1697s Selecting previously unselected package blt.
1697s Preparing to unpack .../051-blt_2.5.3+dfsg-7build1_ppc64el.deb ...
1697s Unpacking blt (2.5.3+dfsg-7build1) ...
1697s Selecting previously unselected package libisl23:ppc64el.
1697s Preparing to unpack .../052-libisl23_0.27-1_ppc64el.deb ...
1697s Unpacking libisl23:ppc64el (0.27-1) ...
1697s Selecting previously unselected package libmpc3:ppc64el.
1697s Preparing to unpack .../053-libmpc3_1.3.1-1build2_ppc64el.deb ...
1697s Unpacking libmpc3:ppc64el (1.3.1-1build2) ...
1697s Selecting previously unselected package cpp-14-powerpc64le-linux-gnu.
1697s Preparing to unpack .../054-cpp-14-powerpc64le-linux-gnu_14.2.0-17ubuntu1_ppc64el.deb ...
1697s Unpacking cpp-14-powerpc64le-linux-gnu (14.2.0-17ubuntu1) ...
1697s Selecting previously unselected package cpp-14.
1697s Preparing to unpack .../055-cpp-14_14.2.0-17ubuntu1_ppc64el.deb ...
1697s Unpacking cpp-14 (14.2.0-17ubuntu1) ...
1697s Selecting previously unselected package cpp-powerpc64le-linux-gnu.
1697s Preparing to unpack .../056-cpp-powerpc64le-linux-gnu_4%3a14.2.0-1ubuntu1_ppc64el.deb ...
1697s Unpacking cpp-powerpc64le-linux-gnu (4:14.2.0-1ubuntu1) ...
1697s Selecting previously unselected package cpp.
1697s Preparing to unpack .../057-cpp_4%3a14.2.0-1ubuntu1_ppc64el.deb ...
1697s Unpacking cpp (4:14.2.0-1ubuntu1) ...
1697s Selecting previously unselected package libcc1-0:ppc64el.
1697s Preparing to unpack .../058-libcc1-0_15-20250213-1ubuntu1_ppc64el.deb ...
1697s Unpacking libcc1-0:ppc64el (15-20250213-1ubuntu1) ...
1697s Selecting previously unselected package libitm1:ppc64el.
1697s Preparing to unpack .../059-libitm1_15-20250213-1ubuntu1_ppc64el.deb ...
1697s Unpacking libitm1:ppc64el (15-20250213-1ubuntu1) ...
1697s Selecting previously unselected package libasan8:ppc64el.
1697s Preparing to unpack .../060-libasan8_15-20250213-1ubuntu1_ppc64el.deb ...
1697s Unpacking libasan8:ppc64el (15-20250213-1ubuntu1) ...
1698s Selecting previously unselected package liblsan0:ppc64el.
1698s Preparing to unpack .../061-liblsan0_15-20250213-1ubuntu1_ppc64el.deb ...
1698s Unpacking liblsan0:ppc64el (15-20250213-1ubuntu1) ...
1698s Selecting previously unselected package libtsan2:ppc64el.
1698s Preparing to unpack .../062-libtsan2_15-20250213-1ubuntu1_ppc64el.deb ...
1698s Unpacking libtsan2:ppc64el (15-20250213-1ubuntu1) ...
1698s Selecting previously unselected package libubsan1:ppc64el.
1698s Preparing to unpack .../063-libubsan1_15-20250213-1ubuntu1_ppc64el.deb ...
1698s Unpacking libubsan1:ppc64el (15-20250213-1ubuntu1) ...
1698s Selecting previously unselected package libquadmath0:ppc64el.
1698s Preparing to unpack .../064-libquadmath0_15-20250213-1ubuntu1_ppc64el.deb ...
1698s Unpacking libquadmath0:ppc64el (15-20250213-1ubuntu1) ...
1698s Selecting previously unselected package libgcc-14-dev:ppc64el.
1698s Preparing to unpack .../065-libgcc-14-dev_14.2.0-17ubuntu1_ppc64el.deb ...
1698s Unpacking libgcc-14-dev:ppc64el (14.2.0-17ubuntu1) ...
1698s Selecting previously unselected package gcc-14-powerpc64le-linux-gnu.
1698s Preparing to unpack .../066-gcc-14-powerpc64le-linux-gnu_14.2.0-17ubuntu1_ppc64el.deb ...
1698s Unpacking gcc-14-powerpc64le-linux-gnu (14.2.0-17ubuntu1) ...
1699s Selecting previously unselected package gcc-14.
1699s Preparing to unpack .../067-gcc-14_14.2.0-17ubuntu1_ppc64el.deb ...
1699s Unpacking gcc-14 (14.2.0-17ubuntu1) ...
1699s Selecting previously unselected package gcc-powerpc64le-linux-gnu.
1699s Preparing to unpack .../068-gcc-powerpc64le-linux-gnu_4%3a14.2.0-1ubuntu1_ppc64el.deb ...
1699s Unpacking gcc-powerpc64le-linux-gnu (4:14.2.0-1ubuntu1) ...
1699s Selecting previously unselected package gcc.
1699s Preparing to unpack .../069-gcc_4%3a14.2.0-1ubuntu1_ppc64el.deb ...
1699s Unpacking gcc (4:14.2.0-1ubuntu1) ...
1699s Selecting previously unselected package libstdc++-14-dev:ppc64el.
1699s Preparing to unpack .../070-libstdc++-14-dev_14.2.0-17ubuntu1_ppc64el.deb ...
1699s Unpacking libstdc++-14-dev:ppc64el (14.2.0-17ubuntu1) ...
1699s Selecting previously unselected package g++-14-powerpc64le-linux-gnu.
1699s Preparing to unpack .../071-g++-14-powerpc64le-linux-gnu_14.2.0-17ubuntu1_ppc64el.deb ...
1699s Unpacking g++-14-powerpc64le-linux-gnu (14.2.0-17ubuntu1) ...
1700s Selecting previously unselected package g++-14.
1700s Preparing to unpack .../072-g++-14_14.2.0-17ubuntu1_ppc64el.deb ...
1700s Unpacking g++-14 (14.2.0-17ubuntu1) ...
1700s Selecting previously unselected package g++-powerpc64le-linux-gnu.
1700s Preparing to unpack .../073-g++-powerpc64le-linux-gnu_4%3a14.2.0-1ubuntu1_ppc64el.deb ...
1700s Unpacking g++-powerpc64le-linux-gnu (4:14.2.0-1ubuntu1) ...
1700s Selecting previously unselected package g++.
1700s Preparing to unpack .../074-g++_4%3a14.2.0-1ubuntu1_ppc64el.deb ...
1700s Unpacking g++ (4:14.2.0-1ubuntu1) ...
1700s Selecting previously unselected package build-essential.
1700s Preparing to unpack .../075-build-essential_12.10ubuntu1_ppc64el.deb ...
1700s Unpacking build-essential (12.10ubuntu1) ...
1700s Selecting previously unselected package bwa.
1700s Preparing to unpack .../076-bwa_0.7.18-1_ppc64el.deb ...
1700s Unpacking bwa (0.7.18-1) ...
1700s Selecting previously unselected package libargtable2-0.
1700s Preparing to unpack .../077-libargtable2-0_13-3_ppc64el.deb ...
1700s Unpacking libargtable2-0 (13-3) ...
1700s Selecting previously unselected package clustalo.
1700s Preparing to unpack .../078-clustalo_1.2.4-8build1_ppc64el.deb ...
1700s Unpacking clustalo (1.2.4-8build1) ...
1700s Selecting previously unselected package libdebhelper-perl.
1700s Preparing to unpack .../079-libdebhelper-perl_13.24.1ubuntu2_all.deb ...
1700s Unpacking libdebhelper-perl (13.24.1ubuntu2) ...
1700s Selecting previously unselected package libtool.
1700s Preparing to unpack .../080-libtool_2.5.4-3build1_all.deb ...
1700s Unpacking libtool (2.5.4-3build1) ...
1700s Selecting previously unselected package dh-autoreconf.
1700s Preparing to unpack .../081-dh-autoreconf_20_all.deb ...
1700s Unpacking dh-autoreconf (20) ...
1700s Selecting previously unselected package libarchive-zip-perl.
1700s Preparing to unpack .../082-libarchive-zip-perl_1.68-1_all.deb ...
1700s Unpacking libarchive-zip-perl (1.68-1) ...
1700s Selecting previously unselected package libfile-stripnondeterminism-perl.
1700s Preparing to unpack .../083-libfile-stripnondeterminism-perl_1.14.1-2_all.deb ...
1700s Unpacking libfile-stripnondeterminism-perl (1.14.1-2) ...
1700s Selecting previously unselected package dh-strip-nondeterminism.
1700s Preparing to unpack .../084-dh-strip-nondeterminism_1.14.1-2_all.deb ...
1700s Unpacking dh-strip-nondeterminism (1.14.1-2) ...
1700s Selecting previously unselected package debugedit.
1700s Preparing to unpack .../085-debugedit_1%3a5.1-2_ppc64el.deb ...
1700s Unpacking debugedit (1:5.1-2) ...
1700s Selecting previously unselected package dwz.
1700s Preparing to unpack .../086-dwz_0.15-1build6_ppc64el.deb ...
1700s Unpacking dwz (0.15-1build6) ...
1700s Selecting previously unselected package gettext.
1700s Preparing to unpack .../087-gettext_0.23.1-1_ppc64el.deb ...
1700s Unpacking gettext (0.23.1-1) ...
1700s Selecting previously unselected package intltool-debian.
1700s Preparing to unpack .../088-intltool-debian_0.35.0+20060710.6_all.deb ...
1700s Unpacking intltool-debian (0.35.0+20060710.6) ...
1700s Selecting previously unselected package po-debconf.
1701s Preparing to unpack .../089-po-debconf_1.0.21+nmu1_all.deb ...
1701s Unpacking po-debconf (1.0.21+nmu1) ...
1701s Selecting previously unselected package debhelper.
1701s Preparing to unpack .../090-debhelper_13.24.1ubuntu2_all.deb ...
1701s Unpacking debhelper (13.24.1ubuntu2) ...
1701s Selecting previously unselected package dh-python.
1701s Preparing to unpack .../091-dh-python_6.20250108_all.deb ...
1701s Unpacking dh-python (6.20250108) ...
1701s Selecting previously unselected package dialign.
1701s Preparing to unpack .../092-dialign_2.2.1-13_ppc64el.deb ...
1701s Unpacking dialign (2.2.1-13) ...
1701s Selecting previously unselected package xml-core.
1701s Preparing to unpack .../093-xml-core_0.19_all.deb ...
1701s Unpacking xml-core (0.19) ...
1701s Selecting previously unselected package docutils-common.
1701s Preparing to unpack .../094-docutils-common_0.21.2+dfsg-2_all.deb ...
1701s Unpacking docutils-common (0.21.2+dfsg-2) ...
1701s Selecting previously unselected package libcifpp-data.
1701s Preparing to unpack .../095-libcifpp-data_7.0.9-1_all.deb ...
1701s Unpacking libcifpp-data (7.0.9-1) ...
1701s Selecting previously unselected package libcifpp7:ppc64el.
1701s Preparing to unpack .../096-libcifpp7_7.0.9-1_ppc64el.deb ...
1701s Unpacking libcifpp7:ppc64el (7.0.9-1) ...
1701s Selecting previously unselected package dssp.
1701s Preparing to unpack .../097-dssp_4.4.10-1_ppc64el.deb ...
1701s Unpacking dssp (4.4.10-1) ...
1701s Selecting previously unselected package libimagequant0:ppc64el.
1701s Preparing to unpack .../098-libimagequant0_2.18.0-1build1_ppc64el.deb ...
1701s Unpacking libimagequant0:ppc64el (2.18.0-1build1) ...
1701s Selecting previously unselected package libgraphite2-3:ppc64el.
1701s Preparing to unpack .../099-libgraphite2-3_1.3.14-2ubuntu1_ppc64el.deb ...
1701s Unpacking libgraphite2-3:ppc64el (1.3.14-2ubuntu1) ...
1701s Selecting previously unselected package libharfbuzz0b:ppc64el.
1701s Preparing to unpack .../100-libharfbuzz0b_10.2.0-1_ppc64el.deb ...
1701s Unpacking libharfbuzz0b:ppc64el (10.2.0-1) ...
1701s Selecting previously unselected package libraqm0:ppc64el.
1701s Preparing to unpack .../101-libraqm0_0.10.2-1_ppc64el.deb ...
1701s Unpacking libraqm0:ppc64el (0.10.2-1) ...
1701s Selecting previously unselected package libxpm4:ppc64el.
1701s Preparing to unpack .../102-libxpm4_1%3a3.5.17-1build2_ppc64el.deb ...
1701s Unpacking libxpm4:ppc64el (1:3.5.17-1build2) ...
1701s Selecting previously unselected package libgd3:ppc64el.
1701s Preparing to unpack .../103-libgd3_2.3.3-12ubuntu3_ppc64el.deb ...
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1701s Selecting previously unselected package libhpdf-2.3.0:ppc64el.
1701s Preparing to unpack .../104-libhpdf-2.3.0_2.3.0+dfsg-1build3_ppc64el.deb ...
1701s Unpacking libhpdf-2.3.0:ppc64el (2.3.0+dfsg-1build3) ...
1702s Selecting previously unselected package mysql-common.
1702s Preparing to unpack .../105-mysql-common_5.8+1.1.1_all.deb ...
1702s Unpacking mysql-common (5.8+1.1.1) ...
1702s Selecting previously unselected package libmysqlclient21:ppc64el.
1702s Preparing to unpack .../106-libmysqlclient21_8.0.40-1_ppc64el.deb ...
1702s Unpacking libmysqlclient21:ppc64el (8.0.40-1) ...
1702s Selecting previously unselected package libpq5:ppc64el.
1702s Preparing to unpack .../107-libpq5_17.3-3_ppc64el.deb ...
1702s Unpacking libpq5:ppc64el (17.3-3) ...
1702s Selecting previously unselected package emboss-lib.
1702s Preparing to unpack .../108-emboss-lib_6.6.0+dfsg-12ubuntu2_ppc64el.deb ...
1702s Unpacking emboss-lib (6.6.0+dfsg-12ubuntu2) ...
1702s Selecting previously unselected package emboss-data.
1702s Preparing to unpack .../109-emboss-data_6.6.0+dfsg-12ubuntu2_all.deb ...
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1709s Selecting previously unselected package emboss.
1709s Preparing to unpack .../110-emboss_6.6.0+dfsg-12ubuntu2_ppc64el.deb ...
1709s Unpacking emboss (6.6.0+dfsg-12ubuntu2) ...
1709s Selecting previously unselected package fonts-font-awesome.
1709s Preparing to unpack .../111-fonts-font-awesome_5.0.10+really4.7.0~dfsg-4.1_all.deb ...
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1709s Selecting previously unselected package fonts-lmodern.
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1709s Selecting previously unselected package fonts-lyx.
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1710s Selecting previously unselected package libgs-common.
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1710s Selecting previously unselected package libgs10-common.
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1710s Selecting previously unselected package libavahi-common-data:ppc64el.
1710s Preparing to unpack .../116-libavahi-common-data_0.8-14ubuntu1_ppc64el.deb ...
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1710s Selecting previously unselected package libavahi-common3:ppc64el.
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1710s Selecting previously unselected package libavahi-client3:ppc64el.
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1710s Selecting previously unselected package libcups2t64:ppc64el.
1710s Preparing to unpack .../119-libcups2t64_2.4.11-0ubuntu2_ppc64el.deb ...
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1710s Selecting previously unselected package libidn12:ppc64el.
1710s Preparing to unpack .../120-libidn12_1.42-3_ppc64el.deb ...
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1710s Selecting previously unselected package libijs-0.35:ppc64el.
1710s Preparing to unpack .../121-libijs-0.35_0.35-15.1build1_ppc64el.deb ...
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1710s Selecting previously unselected package libjbig2dec0:ppc64el.
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1710s Selecting previously unselected package libpaper2:ppc64el.
1710s Preparing to unpack .../123-libpaper2_2.2.5-0.3_ppc64el.deb ...
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1710s Selecting previously unselected package libice6:ppc64el.
1710s Preparing to unpack .../124-libice6_2%3a1.1.1-1_ppc64el.deb ...
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1710s Selecting previously unselected package libsm6:ppc64el.
1710s Preparing to unpack .../125-libsm6_2%3a1.2.4-1_ppc64el.deb ...
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1710s Selecting previously unselected package libxt6t64:ppc64el.
1710s Preparing to unpack .../126-libxt6t64_1%3a1.2.1-1.2build1_ppc64el.deb ...
1710s Unpacking libxt6t64:ppc64el (1:1.2.1-1.2build1) ...
1710s Selecting previously unselected package libgs10:ppc64el.
1710s Preparing to unpack .../127-libgs10_10.04.0~dfsg1-2ubuntu1_ppc64el.deb ...
1710s Unpacking libgs10:ppc64el (10.04.0~dfsg1-2ubuntu1) ...
1710s Selecting previously unselected package ghostscript.
1710s Preparing to unpack .../128-ghostscript_10.04.0~dfsg1-2ubuntu1_ppc64el.deb ...
1710s Unpacking ghostscript (10.04.0~dfsg1-2ubuntu1) ...
1710s Selecting previously unselected package libnetpbm11t64:ppc64el.
1710s Preparing to unpack .../129-libnetpbm11t64_2%3a11.09.02-2_ppc64el.deb ...
1710s Unpacking libnetpbm11t64:ppc64el (2:11.09.02-2) ...
1710s Selecting previously unselected package netpbm.
1710s Preparing to unpack .../130-netpbm_2%3a11.09.02-2_ppc64el.deb ...
1710s Unpacking netpbm (2:11.09.02-2) ...
1711s Selecting previously unselected package tex-common.
1711s Preparing to unpack .../131-tex-common_6.18_all.deb ...
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1711s Selecting previously unselected package libpaper-utils.
1711s Preparing to unpack .../132-libpaper-utils_2.2.5-0.3_ppc64el.deb ...
1711s Unpacking libpaper-utils (2.2.5-0.3) ...
1711s Selecting previously unselected package libkpathsea6:ppc64el.
1711s Preparing to unpack .../133-libkpathsea6_2024.20240313.70630+ds-5build2_ppc64el.deb ...
1711s Unpacking libkpathsea6:ppc64el (2024.20240313.70630+ds-5build2) ...
1711s Selecting previously unselected package libptexenc1:ppc64el.
1711s Preparing to unpack .../134-libptexenc1_2024.20240313.70630+ds-5build2_ppc64el.deb ...
1711s Unpacking libptexenc1:ppc64el (2024.20240313.70630+ds-5build2) ...
1711s Selecting previously unselected package libsynctex2:ppc64el.
1711s Preparing to unpack .../135-libsynctex2_2024.20240313.70630+ds-5build2_ppc64el.deb ...
1711s Unpacking libsynctex2:ppc64el (2024.20240313.70630+ds-5build2) ...
1711s Selecting previously unselected package libtexlua53-5:ppc64el.
1711s Preparing to unpack .../136-libtexlua53-5_2024.20240313.70630+ds-5build2_ppc64el.deb ...
1711s Unpacking libtexlua53-5:ppc64el (2024.20240313.70630+ds-5build2) ...
1711s Selecting previously unselected package t1utils.
1711s Preparing to unpack .../137-t1utils_1.41-4build3_ppc64el.deb ...
1711s Unpacking t1utils (1.41-4build3) ...
1711s Selecting previously unselected package libpixman-1-0:ppc64el.
1711s Preparing to unpack .../138-libpixman-1-0_0.44.0-3_ppc64el.deb ...
1711s Unpacking libpixman-1-0:ppc64el (0.44.0-3) ...
1711s Selecting previously unselected package libxcb-render0:ppc64el.
1711s Preparing to unpack .../139-libxcb-render0_1.17.0-2_ppc64el.deb ...
1711s Unpacking libxcb-render0:ppc64el (1.17.0-2) ...
1711s Selecting previously unselected package libxcb-shm0:ppc64el.
1711s Preparing to unpack .../140-libxcb-shm0_1.17.0-2_ppc64el.deb ...
1711s Unpacking libxcb-shm0:ppc64el (1.17.0-2) ...
1711s Selecting previously unselected package libcairo2:ppc64el.
1711s Preparing to unpack .../141-libcairo2_1.18.2-2_ppc64el.deb ...
1711s Unpacking libcairo2:ppc64el (1.18.2-2) ...
1711s Selecting previously unselected package libmpfi0:ppc64el.
1711s Preparing to unpack .../142-libmpfi0_1.5.4+ds-4_ppc64el.deb ...
1711s Unpacking libmpfi0:ppc64el (1.5.4+ds-4) ...
1711s Selecting previously unselected package libpotrace0:ppc64el.
1711s Preparing to unpack .../143-libpotrace0_1.16-2build1_ppc64el.deb ...
1711s Unpacking libpotrace0:ppc64el (1.16-2build1) ...
1711s Selecting previously unselected package libteckit0:ppc64el.
1711s Preparing to unpack .../144-libteckit0_2.5.12+ds1-1_ppc64el.deb ...
1711s Unpacking libteckit0:ppc64el (2.5.12+ds1-1) ...
1711s Selecting previously unselected package libxmu6:ppc64el.
1711s Preparing to unpack .../145-libxmu6_2%3a1.1.3-3build2_ppc64el.deb ...
1711s Unpacking libxmu6:ppc64el (2:1.1.3-3build2) ...
1712s Selecting previously unselected package libxaw7:ppc64el.
1712s Preparing to unpack .../146-libxaw7_2%3a1.0.16-1_ppc64el.deb ...
1712s Unpacking libxaw7:ppc64el (2:1.0.16-1) ...
1712s Selecting previously unselected package libxi6:ppc64el.
1712s Preparing to unpack .../147-libxi6_2%3a1.8.2-1_ppc64el.deb ...
1712s Unpacking libxi6:ppc64el (2:1.8.2-1) ...
1712s Selecting previously unselected package libzzip-0-13t64:ppc64el.
1712s Preparing to unpack .../148-libzzip-0-13t64_0.13.72+dfsg.1-1.2build1_ppc64el.deb ...
1712s Unpacking libzzip-0-13t64:ppc64el (0.13.72+dfsg.1-1.2build1) ...
1712s Selecting previously unselected package texlive-binaries.
1712s Preparing to unpack .../149-texlive-binaries_2024.20240313.70630+ds-5build2_ppc64el.deb ...
1712s Unpacking texlive-binaries (2024.20240313.70630+ds-5build2) ...
1712s Selecting previously unselected package xdg-utils.
1712s Preparing to unpack .../150-xdg-utils_1.2.1-2ubuntu1_all.deb ...
1712s Unpacking xdg-utils (1.2.1-2ubuntu1) ...
1712s Selecting previously unselected package texlive-base.
1712s Preparing to unpack .../151-texlive-base_2024.20241115-1_all.deb ...
1712s Unpacking texlive-base (2024.20241115-1) ...
1714s Selecting previously unselected package hicolor-icon-theme.
1714s Preparing to unpack .../152-hicolor-icon-theme_0.18-2_all.deb ...
1714s Unpacking hicolor-icon-theme (0.18-2) ...
1714s Selecting previously unselected package imagemagick-7.q16.
1714s Preparing to unpack .../153-imagemagick-7.q16_8%3a7.1.1.43+dfsg1-1_ppc64el.deb ...
1714s Unpacking imagemagick-7.q16 (8:7.1.1.43+dfsg1-1) ...
1714s Selecting previously unselected package imagemagick.
1714s Preparing to unpack .../154-imagemagick_8%3a7.1.1.43+dfsg1-1_ppc64el.deb ...
1714s Unpacking imagemagick (8:7.1.1.43+dfsg1-1) ...
1714s Selecting previously unselected package hevea.
1714s Preparing to unpack .../155-hevea_2.36-2_ppc64el.deb ...
1714s Unpacking hevea (2.36-2) ...
1714s Selecting previously unselected package libsuitesparseconfig7:ppc64el.
1714s Preparing to unpack .../156-libsuitesparseconfig7_1%3a7.8.3+dfsg-3_ppc64el.deb ...
1714s Unpacking libsuitesparseconfig7:ppc64el (1:7.8.3+dfsg-3) ...
1714s Selecting previously unselected package libamd3:ppc64el.
1714s Preparing to unpack .../157-libamd3_1%3a7.8.3+dfsg-3_ppc64el.deb ...
1714s Unpacking libamd3:ppc64el (1:7.8.3+dfsg-3) ...
1714s Selecting previously unselected package libapache-pom-java.
1714s Preparing to unpack .../158-libapache-pom-java_33-2_all.deb ...
1714s Unpacking libapache-pom-java (33-2) ...
1714s Selecting previously unselected package libblas3:ppc64el.
1714s Preparing to unpack .../159-libblas3_3.12.1-2_ppc64el.deb ...
1714s Unpacking libblas3:ppc64el (3.12.1-2) ...
1714s Selecting previously unselected package libgfortran5:ppc64el.
1714s Preparing to unpack .../160-libgfortran5_15-20250213-1ubuntu1_ppc64el.deb ...
1714s Unpacking libgfortran5:ppc64el (15-20250213-1ubuntu1) ...
1714s Selecting previously unselected package liblapack3:ppc64el.
1714s Preparing to unpack .../161-liblapack3_3.12.1-2_ppc64el.deb ...
1714s Unpacking liblapack3:ppc64el (3.12.1-2) ...
1715s Selecting previously unselected package libarpack2t64:ppc64el.
1715s Preparing to unpack .../162-libarpack2t64_3.9.1-4_ppc64el.deb ...
1715s Unpacking libarpack2t64:ppc64el (3.9.1-4) ...
1715s Selecting previously unselected package libcolamd3:ppc64el.
1715s Preparing to unpack .../163-libcolamd3_1%3a7.8.3+dfsg-3_ppc64el.deb ...
1715s Unpacking libcolamd3:ppc64el (1:7.8.3+dfsg-3) ...
1715s Selecting previously unselected package libcommons-parent-java.
1715s Preparing to unpack .../164-libcommons-parent-java_56-1_all.deb ...
1715s Unpacking libcommons-parent-java (56-1) ...
1715s Selecting previously unselected package libcommons-logging-java.
1715s Preparing to unpack .../165-libcommons-logging-java_1.3.0-1ubuntu1_all.deb ...
1715s Unpacking libcommons-logging-java (1.3.0-1ubuntu1) ...
1715s Selecting previously unselected package libexpat1-dev:ppc64el.
1715s Preparing to unpack .../166-libexpat1-dev_2.6.4-1_ppc64el.deb ...
1715s Unpacking libexpat1-dev:ppc64el (2.6.4-1) ...
1715s Selecting previously unselected package libglpk40:ppc64el.
1715s Preparing to unpack .../167-libglpk40_5.0-1build2_ppc64el.deb ...
1715s Unpacking libglpk40:ppc64el (5.0-1build2) ...
1715s Selecting previously unselected package libplfit0:ppc64el.
1715s Preparing to unpack .../168-libplfit0_0.9.4+ds-1ubuntu5_ppc64el.deb ...
1715s Unpacking libplfit0:ppc64el (0.9.4+ds-1ubuntu5) ...
1715s Selecting previously unselected package libigraph3t64:ppc64el.
1715s Preparing to unpack .../169-libigraph3t64_0.10.15+ds-2_ppc64el.deb ...
1715s Unpacking libigraph3t64:ppc64el (0.10.15+ds-2) ...
1715s Selecting previously unselected package libjs-jquery.
1715s Preparing to unpack .../170-libjs-jquery_3.6.1+dfsg+~3.5.14-1_all.deb ...
1715s Unpacking libjs-jquery (3.6.1+dfsg+~3.5.14-1) ...
1715s Selecting previously unselected package libjs-jquery-ui.
1715s Preparing to unpack .../171-libjs-jquery-ui_1.13.2+dfsg-1_all.deb ...
1715s Unpacking libjs-jquery-ui (1.13.2+dfsg-1) ...
1715s Selecting previously unselected package libjs-underscore.
1715s Preparing to unpack .../172-libjs-underscore_1.13.4~dfsg+~1.11.4-3_all.deb ...
1715s Unpacking libjs-underscore (1.13.4~dfsg+~1.11.4-3) ...
1715s Selecting previously unselected package libjs-sphinxdoc.
1715s Preparing to unpack .../173-libjs-sphinxdoc_8.1.3-5_all.deb ...
1715s Unpacking libjs-sphinxdoc (8.1.3-5) ...
1715s Selecting previously unselected package libjson-perl.
1715s Preparing to unpack .../174-libjson-perl_4.10000-1_all.deb ...
1715s Unpacking libjson-perl (4.10000-1) ...
1715s Selecting previously unselected package liblbfgsb0:ppc64el.
1715s Preparing to unpack .../175-liblbfgsb0_3.0+dfsg.4-1build1_ppc64el.deb ...
1715s Unpacking liblbfgsb0:ppc64el (3.0+dfsg.4-1build1) ...
1715s Selecting previously unselected package libmbedcrypto16:ppc64el.
1715s Preparing to unpack .../176-libmbedcrypto16_3.6.2-3ubuntu1_ppc64el.deb ...
1715s Unpacking libmbedcrypto16:ppc64el (3.6.2-3ubuntu1) ...
1715s Selecting previously unselected package libmbedx509-7:ppc64el.
1715s Preparing to unpack .../177-libmbedx509-7_3.6.2-3ubuntu1_ppc64el.deb ...
1715s Unpacking libmbedx509-7:ppc64el (3.6.2-3ubuntu1) ...
1715s Selecting previously unselected package libmbedtls21:ppc64el.
1715s Preparing to unpack .../178-libmbedtls21_3.6.2-3ubuntu1_ppc64el.deb ...
1715s Unpacking libmbedtls21:ppc64el (3.6.2-3ubuntu1) ...
1715s Selecting previously unselected package zlib1g-dev:ppc64el.
1715s Preparing to unpack .../179-zlib1g-dev_1%3a1.3.dfsg+really1.3.1-1ubuntu1_ppc64el.deb ...
1715s Unpacking zlib1g-dev:ppc64el (1:1.3.dfsg+really1.3.1-1ubuntu1) ...
1715s Selecting previously unselected package libpython3.13-dev:ppc64el.
1715s Preparing to unpack .../180-libpython3.13-dev_3.13.2-1_ppc64el.deb ...
1715s Unpacking libpython3.13-dev:ppc64el (3.13.2-1) ...
1716s Selecting previously unselected package libpython3-dev:ppc64el.
1716s Preparing to unpack .../181-libpython3-dev_3.13.1-1~exp2_ppc64el.deb ...
1716s Unpacking libpython3-dev:ppc64el (3.13.1-1~exp2) ...
1716s Selecting previously unselected package libpython3.12-dev:ppc64el.
1716s Preparing to unpack .../182-libpython3.12-dev_3.12.9-1_ppc64el.deb ...
1716s Unpacking libpython3.12-dev:ppc64el (3.12.9-1) ...
1716s Selecting previously unselected package libpython3-all-dev:ppc64el.
1716s Preparing to unpack .../183-libpython3-all-dev_3.13.1-1~exp2_ppc64el.deb ...
1716s Unpacking libpython3-all-dev:ppc64el (3.13.1-1~exp2) ...
1716s Selecting previously unselected package libqhull-r8.0:ppc64el.
1716s Preparing to unpack .../184-libqhull-r8.0_2020.2-6build1_ppc64el.deb ...
1716s Unpacking libqhull-r8.0:ppc64el (2020.2-6build1) ...
1716s Selecting previously unselected package libxslt1.1:ppc64el.
1716s Preparing to unpack .../185-libxslt1.1_1.1.39-0exp1ubuntu2_ppc64el.deb ...
1716s Unpacking libxslt1.1:ppc64el (1.1.39-0exp1ubuntu2) ...
1716s Selecting previously unselected package mafft.
1716s Preparing to unpack .../186-mafft_7.505-1_ppc64el.deb ...
1716s Unpacking mafft (7.505-1) ...
1716s Selecting previously unselected package ncbi-data.
1716s Preparing to unpack .../187-ncbi-data_6.1.20170106+dfsg2-5_all.deb ...
1716s Unpacking ncbi-data (6.1.20170106+dfsg2-5) ...
1716s Selecting previously unselected package ncbi-blast+.
1716s Preparing to unpack .../188-ncbi-blast+_2.16.0+ds-6build1_ppc64el.deb ...
1716s Unpacking ncbi-blast+ (2.16.0+ds-6build1) ...
1717s Selecting previously unselected package phylip.
1717s Preparing to unpack .../189-phylip_1%3a3.697+dfsg-4build1_ppc64el.deb ...
1717s Unpacking phylip (1:3.697+dfsg-4build1) ...
1717s Selecting previously unselected package prank.
1717s Preparing to unpack .../190-prank_0.0.170427+dfsg-3_ppc64el.deb ...
1717s Unpacking prank (0.0.170427+dfsg-3) ...
1717s Selecting previously unselected package preview-latex-style.
1717s Preparing to unpack .../191-preview-latex-style_13.2-1_all.deb ...
1717s Unpacking preview-latex-style (13.2-1) ...
1717s Selecting previously unselected package probcons.
1717s Preparing to unpack .../192-probcons_1.12-14_ppc64el.deb ...
1717s Unpacking probcons (1.12-14) ...
1717s Selecting previously unselected package python-biopython-doc.
1717s Preparing to unpack .../193-python-biopython-doc_1.85+dfsg-2_all.deb ...
1717s Unpacking python-biopython-doc (1.85+dfsg-2) ...
1718s Selecting previously unselected package python-matplotlib-data.
1718s Preparing to unpack .../194-python-matplotlib-data_3.8.3-3ubuntu2_all.deb ...
1718s Unpacking python-matplotlib-data (3.8.3-3ubuntu2) ...
1718s Selecting previously unselected package python3-all.
1718s Preparing to unpack .../195-python3-all_3.13.1-1~exp2_ppc64el.deb ...
1718s Unpacking python3-all (3.13.1-1~exp2) ...
1718s Selecting previously unselected package python3.13-dev.
1718s Preparing to unpack .../196-python3.13-dev_3.13.2-1_ppc64el.deb ...
1718s Unpacking python3.13-dev (3.13.2-1) ...
1718s Selecting previously unselected package python3-dev.
1718s Preparing to unpack .../197-python3-dev_3.13.1-1~exp2_ppc64el.deb ...
1718s Unpacking python3-dev (3.13.1-1~exp2) ...
1718s Selecting previously unselected package python3.12-dev.
1718s Preparing to unpack .../198-python3.12-dev_3.12.9-1_ppc64el.deb ...
1718s Unpacking python3.12-dev (3.12.9-1) ...
1718s Selecting previously unselected package python3-all-dev.
1718s Preparing to unpack .../199-python3-all-dev_3.13.1-1~exp2_ppc64el.deb ...
1718s Unpacking python3-all-dev (3.13.1-1~exp2) ...
1719s Selecting previously unselected package python3-numpy.
1719s Preparing to unpack .../200-python3-numpy_1%3a1.26.4+ds-13_ppc64el.deb ...
1719s Unpacking python3-numpy (1:1.26.4+ds-13) ...
1719s Selecting previously unselected package python3.12-tk.
1719s Preparing to unpack .../201-python3.12-tk_3.12.9-1_ppc64el.deb ...
1719s Unpacking python3.12-tk (3.12.9-1) ...
1719s Selecting previously unselected package python3.13-tk.
1719s Preparing to unpack .../202-python3.13-tk_3.13.2-1_ppc64el.deb ...
1719s Unpacking python3.13-tk (3.13.2-1) ...
1719s Selecting previously unselected package python3-tk:ppc64el.
1719s Preparing to unpack .../203-python3-tk_3.13.1-1_ppc64el.deb ...
1719s Unpacking python3-tk:ppc64el (3.13.1-1) ...
1719s Selecting previously unselected package python3-pil.imagetk:ppc64el.
1719s Preparing to unpack .../204-python3-pil.imagetk_11.1.0-5_ppc64el.deb ...
1719s Unpacking python3-pil.imagetk:ppc64el (11.1.0-5) ...
1719s Selecting previously unselected package python3-pil:ppc64el.
1719s Preparing to unpack .../205-python3-pil_11.1.0-5_ppc64el.deb ...
1719s Unpacking python3-pil:ppc64el (11.1.0-5) ...
1719s Selecting previously unselected package python3-cairo.
1719s Preparing to unpack .../206-python3-cairo_1.26.1-2build1_ppc64el.deb ...
1719s Unpacking python3-cairo (1.26.1-2build1) ...
1719s Selecting previously unselected package python3-freetype.
1719s Preparing to unpack .../207-python3-freetype_2.5.1-1_all.deb ...
1719s Unpacking python3-freetype (2.5.1-1) ...
1719s Selecting previously unselected package python3-rlpycairo.
1719s Preparing to unpack .../208-python3-rlpycairo_0.3.0-3_all.deb ...
1719s Unpacking python3-rlpycairo (0.3.0-3) ...
1719s Selecting previously unselected package python3-reportlab.
1719s Preparing to unpack .../209-python3-reportlab_4.3.0-1_all.deb ...
1719s Unpacking python3-reportlab (4.3.0-1) ...
1719s Selecting previously unselected package w3c-sgml-lib.
1719s Preparing to unpack .../210-w3c-sgml-lib_1.3-3_all.deb ...
1719s Unpacking w3c-sgml-lib (1.3-3) ...
1720s Selecting previously unselected package python3-biopython.
1720s Preparing to unpack .../211-python3-biopython_1.85+dfsg-2_ppc64el.deb ...
1720s Unpacking python3-biopython (1.85+dfsg-2) ...
1720s Selecting previously unselected package python3-biopython-sql.
1720s Preparing to unpack .../212-python3-biopython-sql_1.85+dfsg-2_all.deb ...
1720s Unpacking python3-biopython-sql (1.85+dfsg-2) ...
1720s Selecting previously unselected package python3-brotli.
1720s Preparing to unpack .../213-python3-brotli_1.1.0-2build3_ppc64el.deb ...
1720s Unpacking python3-brotli (1.1.0-2build3) ...
1720s Selecting previously unselected package python3-contourpy.
1720s Preparing to unpack .../214-python3-contourpy_1.3.1-1_ppc64el.deb ...
1720s Unpacking python3-contourpy (1.3.1-1) ...
1720s Selecting previously unselected package python3-cycler.
1720s Preparing to unpack .../215-python3-cycler_0.12.1-1_all.deb ...
1720s Unpacking python3-cycler (0.12.1-1) ...
1720s Selecting previously unselected package python3-dateutil.
1720s Preparing to unpack .../216-python3-dateutil_2.9.0-3_all.deb ...
1720s Unpacking python3-dateutil (2.9.0-3) ...
1720s Selecting previously unselected package python3-decorator.
1720s Preparing to unpack .../217-python3-decorator_5.1.1-5_all.deb ...
1720s Unpacking python3-decorator (5.1.1-5) ...
1720s Selecting previously unselected package python3-defusedxml.
1720s Preparing to unpack .../218-python3-defusedxml_0.7.1-3_all.deb ...
1720s Unpacking python3-defusedxml (0.7.1-3) ...
1720s Selecting previously unselected package python3-roman.
1720s Preparing to unpack .../219-python3-roman_5.0-1_all.deb ...
1720s Unpacking python3-roman (5.0-1) ...
1720s Selecting previously unselected package python3-docutils.
1720s Preparing to unpack .../220-python3-docutils_0.21.2+dfsg-2_all.deb ...
1720s Unpacking python3-docutils (0.21.2+dfsg-2) ...
1720s Selecting previously unselected package python3-pytz.
1720s Preparing to unpack .../221-python3-pytz_2025.1-3_all.deb ...
1720s Unpacking python3-pytz (2025.1-3) ...
1720s Selecting previously unselected package python3-tz.
1720s Preparing to unpack .../222-python3-tz_2025.1-3_all.deb ...
1720s Unpacking python3-tz (2025.1-3) ...
1721s Selecting previously unselected package python3-platformdirs.
1721s Preparing to unpack .../223-python3-platformdirs_4.3.6-1_all.deb ...
1721s Unpacking python3-platformdirs (4.3.6-1) ...
1721s Selecting previously unselected package python3-fs.
1721s Preparing to unpack .../224-python3-fs_2.4.16-6_all.deb ...
1721s Unpacking python3-fs (2.4.16-6) ...
1721s Selecting previously unselected package python3-lxml:ppc64el.
1721s Preparing to unpack .../225-python3-lxml_5.3.1-1_ppc64el.deb ...
1721s Unpacking python3-lxml:ppc64el (5.3.1-1) ...
1721s Selecting previously unselected package python3-lz4.
1721s Preparing to unpack .../226-python3-lz4_4.4.0+dfsg-1_ppc64el.deb ...
1721s Unpacking python3-lz4 (4.4.0+dfsg-1) ...
1721s Selecting previously unselected package python3-scipy.
1721s Preparing to unpack .../227-python3-scipy_1.14.1-4ubuntu1_ppc64el.deb ...
1721s Unpacking python3-scipy (1.14.1-4ubuntu1) ...
1722s Selecting previously unselected package python3-mpmath.
1722s Preparing to unpack .../228-python3-mpmath_1.3.0-1_all.deb ...
1722s Unpacking python3-mpmath (1.3.0-1) ...
1723s Selecting previously unselected package python3-sympy.
1723s Preparing to unpack .../229-python3-sympy_1.13.3-1_all.deb ...
1723s Unpacking python3-sympy (1.13.3-1) ...
1723s Selecting previously unselected package python3-ufolib2.
1723s Preparing to unpack .../230-python3-ufolib2_0.17.0+dfsg1-1_all.deb ...
1723s Unpacking python3-ufolib2 (0.17.0+dfsg1-1) ...
1723s Selecting previously unselected package unicode-data.
1723s Preparing to unpack .../231-unicode-data_15.1.0-1_all.deb ...
1723s Unpacking unicode-data (15.1.0-1) ...
1724s Selecting previously unselected package python3-fonttools.
1724s Preparing to unpack .../232-python3-fonttools_4.55.3-2_ppc64el.deb ...
1724s Unpacking python3-fonttools (4.55.3-2) ...
1724s Selecting previously unselected package python3-imagesize.
1724s Preparing to unpack .../233-python3-imagesize_1.4.1-1_all.deb ...
1724s Unpacking python3-imagesize (1.4.1-1) ...
1724s Selecting previously unselected package python3-kiwisolver.
1724s Preparing to unpack .../234-python3-kiwisolver_1.4.7-3_ppc64el.deb ...
1724s Unpacking python3-kiwisolver (1.4.7-3) ...
1724s Selecting previously unselected package python3-packaging.
1724s Preparing to unpack .../235-python3-packaging_24.2-1_all.deb ...
1724s Unpacking python3-packaging (24.2-1) ...
1724s Selecting previously unselected package python3-matplotlib.
1724s Preparing to unpack .../236-python3-matplotlib_3.8.3-3ubuntu2_ppc64el.deb ...
1724s Unpacking python3-matplotlib (3.8.3-3ubuntu2) ...
1724s Selecting previously unselected package python3-msgpack.
1724s Preparing to unpack .../237-python3-msgpack_1.0.3-3build3_ppc64el.deb ...
1724s Unpacking python3-msgpack (1.0.3-3build3) ...
1724s Selecting previously unselected package python3-mmtf.
1724s Preparing to unpack .../238-python3-mmtf_1.1.3-1_all.deb ...
1724s Unpacking python3-mmtf (1.1.3-1) ...
1724s Selecting previously unselected package python3-mysqldb.
1724s Preparing to unpack .../239-python3-mysqldb_1.4.6-2build4_ppc64el.deb ...
1724s Unpacking python3-mysqldb (1.4.6-2build4) ...
1724s Selecting previously unselected package python3-networkx.
1724s Preparing to unpack .../240-python3-networkx_3.2.1-4ubuntu1_all.deb ...
1724s Unpacking python3-networkx (3.2.1-4ubuntu1) ...
1725s Selecting previously unselected package sphinx-common.
1725s Preparing to unpack .../241-sphinx-common_8.1.3-5_all.deb ...
1725s Unpacking sphinx-common (8.1.3-5) ...
1726s Selecting previously unselected package python3-alabaster.
1726s Preparing to unpack .../242-python3-alabaster_0.7.16-0.1_all.deb ...
1726s Unpacking python3-alabaster (0.7.16-0.1) ...
1726s Selecting previously unselected package python3-snowballstemmer.
1726s Preparing to unpack .../243-python3-snowballstemmer_2.2.0-4build1_all.deb ...
1726s Unpacking python3-snowballstemmer (2.2.0-4build1) ...
1726s Selecting previously unselected package python3-sphinx.
1726s Preparing to unpack .../244-python3-sphinx_8.1.3-5_all.deb ...
1726s Unpacking python3-sphinx (8.1.3-5) ...
1726s Selecting previously unselected package python3-tabulate.
1726s Preparing to unpack .../245-python3-tabulate_0.9.0-1_all.deb ...
1726s Unpacking python3-tabulate (0.9.0-1) ...
1726s Selecting previously unselected package python3-numpydoc.
1726s Preparing to unpack .../246-python3-numpydoc_1.8.0-1_all.deb ...
1726s Unpacking python3-numpydoc (1.8.0-1) ...
1726s Selecting previously unselected package python3-rdflib.
1726s Preparing to unpack .../247-python3-rdflib_7.1.1-2_all.deb ...
1726s Unpacking python3-rdflib (7.1.1-2) ...
1726s Selecting previously unselected package sphinx-rtd-theme-common.
1726s Preparing to unpack .../248-sphinx-rtd-theme-common_3.0.2+dfsg-2_all.deb ...
1726s Unpacking sphinx-rtd-theme-common (3.0.2+dfsg-2) ...
1726s Selecting previously unselected package python3-sphinxcontrib.jquery.
1726s Preparing to unpack .../249-python3-sphinxcontrib.jquery_4.1-5_all.deb ...
1726s Unpacking python3-sphinxcontrib.jquery (4.1-5) ...
1726s Selecting previously unselected package python3-sphinx-rtd-theme.
1726s Preparing to unpack .../250-python3-sphinx-rtd-theme_3.0.2+dfsg-2_all.deb ...
1726s Unpacking python3-sphinx-rtd-theme (3.0.2+dfsg-2) ...
1726s Selecting previously unselected package python3-texttable.
1726s Preparing to unpack .../251-python3-texttable_1.7.0-1_all.deb ...
1726s Unpacking python3-texttable (1.7.0-1) ...
1726s Selecting previously unselected package t-coffee.
1726s Preparing to unpack .../252-t-coffee_13.45.0.4846264+really13.41.0.28bdc39+dfsg-1_ppc64el.deb ...
1726s Unpacking t-coffee (13.45.0.4846264+really13.41.0.28bdc39+dfsg-1) ...
1726s Selecting previously unselected package texlive-fonts-recommended.
1726s Preparing to unpack .../253-texlive-fonts-recommended_2024.20241115-1_all.deb ...
1726s Unpacking texlive-fonts-recommended (2024.20241115-1) ...
1727s Selecting previously unselected package texlive-latex-base.
1727s Preparing to unpack .../254-texlive-latex-base_2024.20241115-1_all.deb ...
1727s Unpacking texlive-latex-base (2024.20241115-1) ...
1727s Selecting previously unselected package libfontbox-java.
1728s Preparing to unpack .../255-libfontbox-java_1%3a1.8.16-5_all.deb ...
1728s Unpacking libfontbox-java (1:1.8.16-5) ...
1728s Selecting previously unselected package libpdfbox-java.
1728s Preparing to unpack .../256-libpdfbox-java_1%3a1.8.16-5_all.deb ...
1728s Unpacking libpdfbox-java (1:1.8.16-5) ...
1728s Selecting previously unselected package texlive-latex-recommended.
1728s Preparing to unpack .../257-texlive-latex-recommended_2024.20241115-1_all.deb ...
1728s Unpacking texlive-latex-recommended (2024.20241115-1) ...
1729s Selecting previously unselected package texlive-pictures.
1729s Preparing to unpack .../258-texlive-pictures_2024.20241115-1_all.deb ...
1729s Unpacking texlive-pictures (2024.20241115-1) ...
1731s Selecting previously unselected package texlive-latex-extra.
1731s Preparing to unpack .../259-texlive-latex-extra_2024.20250114-1_all.deb ...
1731s Unpacking texlive-latex-extra (2024.20250114-1) ...
1734s Selecting previously unselected package wise-data.
1734s Preparing to unpack .../260-wise-data_2.4.1-25_all.deb ...
1734s Unpacking wise-data (2.4.1-25) ...
1734s Selecting previously unselected package wise.
1734s Preparing to unpack .../261-wise_2.4.1-25_ppc64el.deb ...
1734s Unpacking wise (2.4.1-25) ...
1734s Selecting previously unselected package fasttree.
1734s Preparing to unpack .../262-fasttree_2.1.11-2_ppc64el.deb ...
1734s Unpacking fasttree (2.1.11-2) ...
1734s Selecting previously unselected package python3-igraph.
1734s Preparing to unpack .../263-python3-igraph_0.11.8+ds-1build1_ppc64el.deb ...
1734s Unpacking python3-igraph (0.11.8+ds-1build1) ...
1734s Setting up dh-python (6.20250108) ...
1735s Setting up libgraphite2-3:ppc64el (1.3.14-2ubuntu1) ...
1735s Setting up liblcms2-2:ppc64el (2.16-2) ...
1735s Setting up ncbi-data (6.1.20170106+dfsg2-5) ...
1735s Setting up libpixman-1-0:ppc64el (0.44.0-3) ...
1735s Setting up python3.12-minimal (3.12.9-1) ...
1737s Setting up libsharpyuv0:ppc64el (1.5.0-0.1) ...
1737s Setting up python3-texttable (1.7.0-1) ...
1737s Setting up libaom3:ppc64el (3.12.0-1) ...
1737s Setting up mysql-common (5.8+1.1.1) ...
1737s update-alternatives: using /etc/mysql/my.cnf.fallback to provide /etc/mysql/my.cnf (my.cnf) in auto mode
1737s Setting up libmysqlclient21:ppc64el (8.0.40-1) ...
1737s Setting up libhpdf-2.3.0:ppc64el (2.3.0+dfsg-1build3) ...
1737s Setting up fonts-lato (2.015-1) ...
1737s Setting up liblerc4:ppc64el (4.0.0+ds-5ubuntu1) ...
1737s Setting up libxpm4:ppc64el (1:3.5.17-1build2) ...
1737s Setting up hicolor-icon-theme (0.18-2) ...
1737s Setting up libxi6:ppc64el (2:1.8.2-1) ...
1737s Setting up probcons (1.12-14) ...
1737s Setting up libxrender1:ppc64el (1:0.9.10-1.1build1) ...
1738s Setting up python3-lz4 (4.4.0+dfsg-1) ...
1738s Setting up libxcb-render0:ppc64el (1.17.0-2) ...
1738s Setting up python3-defusedxml (0.7.1-3) ...
1738s Setting up mafft (7.505-1) ...
1738s Setting up libarchive-zip-perl (1.68-1) ...
1738s Setting up imagemagick-7-common (8:7.1.1.43+dfsg1-1) ...
1738s Setting up bwa (0.7.18-1) ...
1738s Setting up python3-alabaster (0.7.16-0.1) ...
1739s Setting up fonts-lyx (2.4.3-1) ...
1739s Setting up libijs-0.35:ppc64el (0.35-15.1build1) ...
1739s Setting up libdebhelper-perl (13.24.1ubuntu2) ...
1739s Setting up libgs-common (10.04.0~dfsg1-2ubuntu1) ...
1739s Setting up python3.12 (3.12.9-1) ...
1741s Setting up libfontbox-java (1:1.8.16-5) ...
1741s Setting up phylip (1:3.697+dfsg-4build1) ...
1741s Setting up x11-common (1:7.7+23ubuntu3) ...
1743s Setting up libpq5:ppc64el (17.3-3) ...
1743s Setting up libdeflate0:ppc64el (1.23-1) ...
1743s Setting up python3-tabulate (0.9.0-1) ...
1743s Setting up m4 (1.4.19-5) ...
1743s Setting up libqhull-r8.0:ppc64el (2020.2-6build1) ...
1743s Setting up python3-all (3.13.1-1~exp2) ...
1743s Setting up python3-pytz (2025.1-3) ...
1743s Setting up libxcb-shm0:ppc64el (1.17.0-2) ...
1743s Setting up libgomp1:ppc64el (15-20250213-1ubuntu1) ...
1743s Setting up python3-freetype (2.5.1-1) ...
1744s Setting up emboss-data (6.6.0+dfsg-12ubuntu2) ...
1744s Setting up python3-networkx (3.2.1-4ubuntu1) ...
1748s Setting up libjbig0:ppc64el (2.1-6.1ubuntu2) ...
1748s Setting up libnetpbm11t64:ppc64el (2:11.09.02-2) ...
1748s Setting up python3-platformdirs (4.3.6-1) ...
1748s Setting up python3-tz (2025.1-3) ...
1748s Setting up t-coffee (13.45.0.4846264+really13.41.0.28bdc39+dfsg-1) ...
1748s Setting up poppler-data (0.4.12-1) ...
1748s Setting up python3-fs (2.4.16-6) ...
1749s Setting up unicode-data (15.1.0-1) ...
1749s Setting up python3-mysqldb (1.4.6-2build4) ...
1750s Setting up tex-common (6.18) ...
1750s update-language: texlive-base not installed and configured, doing nothing!
1750s Setting up python3-roman (5.0-1) ...
1751s Setting up python3-decorator (5.1.1-5) ...
1751s Setting up libfontenc1:ppc64el (1:1.1.8-1build1) ...
1751s Setting up autotools-dev (20220109.1) ...
1751s Setting up libblas3:ppc64el (3.12.1-2) ...
1751s update-alternatives: using /usr/lib/powerpc64le-linux-gnu/blas/libblas.so.3 to provide /usr/lib/powerpc64le-linux-gnu/libblas.so.3 (libblas.so.3-powerpc64le-linux-gnu) in auto mode
1751s Setting up python3-packaging (24.2-1) ...
1751s Setting up libexpat1-dev:ppc64el (2.6.4-1) ...
1751s Setting up libzzip-0-13t64:ppc64el (0.13.72+dfsg.1-1.2build1) ...
1751s Setting up libjbig2dec0:ppc64el (0.20-1build3) ...
1751s Setting up python3-snowballstemmer (2.2.0-4build1) ...
1752s Setting up libteckit0:ppc64el (2.5.12+ds1-1) ...
1752s Setting up python3-brotli (1.1.0-2build3) ...
1752s Setting up libapache-pom-java (33-2) ...
1752s Setting up libavahi-common-data:ppc64el (0.8-14ubuntu1) ...
1752s Setting up xfonts-encodings (1:1.0.5-0ubuntu2) ...
1752s Setting up t1utils (1.41-4build3) ...
1752s Setting up libquadmath0:ppc64el (15-20250213-1ubuntu1) ...
1752s Setting up python3-cycler (0.12.1-1) ...
1753s Setting up libtexlua53-5:ppc64el (2024.20240313.70630+ds-5build2) ...
1753s Setting up libimagequant0:ppc64el (2.18.0-1build1) ...
1753s Setting up fonts-dejavu-mono (2.37-8) ...
1753s Setting up python3-kiwisolver (1.4.7-3) ...
1753s Setting up libmpc3:ppc64el (1.3.1-1build2) ...
1753s Setting up libidn12:ppc64el (1.42-3) ...
1753s Setting up libtcl8.6:ppc64el (8.6.16+dfsg-1) ...
1753s Setting up autopoint (0.23.1-1) ...
1753s Setting up libmpfi0:ppc64el (1.5.4+ds-4) ...
1753s Setting up fonts-dejavu-core (2.37-8) ...
1753s Setting up wise-data (2.4.1-25) ...
1753s Setting up libjpeg-turbo8:ppc64el (2.1.5-3ubuntu2) ...
1753s Setting up libltdl7:ppc64el (2.5.4-3build1) ...
1753s Setting up libfftw3-double3:ppc64el (3.3.10-2fakesync1build1) ...
1753s Setting up libcifpp-data (7.0.9-1) ...
1753s Setting up libkpathsea6:ppc64el (2024.20240313.70630+ds-5build2) ...
1753s Setting up libgfortran5:ppc64el (15-20250213-1ubuntu1) ...
1753s Setting up autoconf (2.72-3) ...
1753s Setting up libwebp7:ppc64el (1.5.0-0.1) ...
1753s Setting up libubsan1:ppc64el (15-20250213-1ubuntu1) ...
1753s Setting up zlib1g-dev:ppc64el (1:1.3.dfsg+really1.3.1-1ubuntu1) ...
1753s Setting up dwz (0.15-1build6) ...
1753s Setting up liblqr-1-0:ppc64el (0.4.2-2.1build2) ...
1753s Setting up python3-rdflib (7.1.1-2) ...
1754s Setting up libasan8:ppc64el (15-20250213-1ubuntu1) ...
1754s Setting up libjson-perl (4.10000-1) ...
1754s Setting up libxslt1.1:ppc64el (1.1.39-0exp1ubuntu2) ...
1754s Setting up debugedit (1:5.1-2) ...
1754s Setting up fonts-lmodern (2.005-1) ...
1754s Setting up libsuitesparseconfig7:ppc64el (1:7.8.3+dfsg-3) ...
1754s Setting up libopenjp2-7:ppc64el (2.5.0-2ubuntu3) ...
1754s Setting up libharfbuzz0b:ppc64el (10.2.0-1) ...
1754s Setting up python3-dateutil (2.9.0-3) ...
1755s Setting up fasttree (2.1.11-2) ...
1755s Setting up sgml-base (1.31) ...
1755s Setting up python3-msgpack (1.0.3-3build3) ...
1756s Setting up libplfit0:ppc64el (0.9.4+ds-1ubuntu5) ...
1756s Setting up libxss1:ppc64el (1:1.2.3-1build3) ...
1756s Setting up libmbedcrypto16:ppc64el (3.6.2-3ubuntu1) ...
1756s Setting up libpaper2:ppc64el (2.2.5-0.3) ...
1756s Setting up libtsan2:ppc64el (15-20250213-1ubuntu1) ...
1756s Setting up libjs-jquery (3.6.1+dfsg+~3.5.14-1) ...
1756s Setting up python3-mpmath (1.3.0-1) ...
1757s Setting up libisl23:ppc64el (0.27-1) ...
1757s Setting up libde265-0:ppc64el (1.0.15-1build4) ...
1757s Setting up python-matplotlib-data (3.8.3-3ubuntu2) ...
1757s Setting up libwebpmux3:ppc64el (1.5.0-0.1) ...
1757s Setting up dialign (2.2.1-13) ...
1757s Setting up fonts-font-awesome (5.0.10+really4.7.0~dfsg-4.1) ...
1757s Setting up sphinx-rtd-theme-common (3.0.2+dfsg-2) ...
1757s Setting up xdg-utils (1.2.1-2ubuntu1) ...
1757s update-alternatives: using /usr/bin/xdg-open to provide /usr/bin/open (open) in auto mode
1757s Setting up libcc1-0:ppc64el (15-20250213-1ubuntu1) ...
1757s Setting up liblsan0:ppc64el (15-20250213-1ubuntu1) ...
1757s Setting up libitm1:ppc64el (15-20250213-1ubuntu1) ...
1757s Setting up libsynctex2:ppc64el (2024.20240313.70630+ds-5build2) ...
1757s Setting up prank (0.0.170427+dfsg-3) ...
1757s Setting up libargtable2-0 (13-3) ...
1757s Setting up libjs-underscore (1.13.4~dfsg+~1.11.4-3) ...
1757s Setting up python3-imagesize (1.4.1-1) ...
1758s Setting up libpotrace0:ppc64el (1.16-2build1) ...
1758s Setting up libjpeg8:ppc64el (8c-2ubuntu11) ...
1758s Setting up automake (1:1.17-3) ...
1758s update-alternatives: using /usr/bin/automake-1.17 to provide /usr/bin/automake (automake) in auto mode
1758s Setting up libfile-stripnondeterminism-perl (1.14.1-2) ...
1758s Setting up python3-sympy (1.13.3-1) ...
1776s Setting up libice6:ppc64el (2:1.1.1-1) ...
1776s Setting up flex (2.6.4-8.2build1) ...
1776s Setting up liblapack3:ppc64el (3.12.1-2) ...
1776s update-alternatives: using /usr/lib/powerpc64le-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/powerpc64le-linux-gnu/liblapack.so.3 (liblapack.so.3-powerpc64le-linux-gnu) in auto mode
1776s Setting up gettext (0.23.1-1) ...
1776s Setting up libarpack2t64:ppc64el (3.9.1-4) ...
1776s Setting up libamd3:ppc64el (1:7.8.3+dfsg-3) ...
1776s Setting up libpdfbox-java (1:1.8.16-5) ...
1776s Setting up libcolamd3:ppc64el (1:7.8.3+dfsg-3) ...
1776s Setting up fontconfig-config (2.15.0-2ubuntu1) ...
1776s Setting up wise (2.4.1-25) ...
1776s Setting up preview-latex-style (13.2-1) ...
1776s Setting up libwebpdemux2:ppc64el (1.5.0-0.1) ...
1776s Setting up libcommons-parent-java (56-1) ...
1776s Setting up libavahi-common3:ppc64el (0.8-14ubuntu1) ...
1776s Setting up libcommons-logging-java (1.3.0-1ubuntu1) ...
1776s Setting up libcifpp7:ppc64el (7.0.9-1) ...
1776s Setting up libpython3.12-dev:ppc64el (3.12.9-1) ...
1776s Setting up libpaper-utils (2.2.5-0.3) ...
1776s Setting up clustalo (1.2.4-8build1) ...
1776s Setting up dssp (4.4.10-1) ...
1776s Setting up xfonts-utils (1:7.7+7) ...
1776s Setting up intltool-debian (0.35.0+20060710.6) ...
1776s Setting up libmbedx509-7:ppc64el (3.6.2-3ubuntu1) ...
1776s Setting up libjs-jquery-ui (1.13.2+dfsg-1) ...
1776s Setting up libptexenc1:ppc64el (2024.20240313.70630+ds-5build2) ...
1776s Setting up libglpk40:ppc64el (5.0-1build2) ...
1776s Setting up libraqm0:ppc64el (0.10.2-1) ...
1776s Setting up libpython3.13-dev:ppc64el (3.13.2-1) ...
1776s Setting up python3.12-dev (3.12.9-1) ...
1776s Setting up cpp-14-powerpc64le-linux-gnu (14.2.0-17ubuntu1) ...
1776s Setting up python3-numpy (1:1.26.4+ds-13) ...
1782s Setting up libjs-sphinxdoc (8.1.3-5) ...
1782s Setting up libraw23t64:ppc64el (0.21.3-1) ...
1782s Setting up cpp-14 (14.2.0-17ubuntu1) ...
1782s Setting up libmbedtls21:ppc64el (3.6.2-3ubuntu1) ...
1782s Setting up dh-strip-nondeterminism (1.14.1-2) ...
1782s Setting up python3-lxml:ppc64el (5.3.1-1) ...
1782s Setting up python-biopython-doc (1.85+dfsg-2) ...
1782s Setting up libtiff6:ppc64el (4.5.1+git230720-4ubuntu4) ...
1782s Setting up xml-core (0.19) ...
1782s Setting up python3-contourpy (1.3.1-1) ...
1783s Setting up libfontconfig1:ppc64el (2.15.0-2ubuntu1) ...
1783s Setting up libgcc-14-dev:ppc64el (14.2.0-17ubuntu1) ...
1783s Setting up libigraph3t64:ppc64el (0.10.15+ds-2) ...
1783s Setting up libstdc++-14-dev:ppc64el (14.2.0-17ubuntu1) ...
1783s Setting up libsm6:ppc64el (2:1.2.4-1) ...
1783s Setting up libavahi-client3:ppc64el (0.8-14ubuntu1) ...
1783s Setting up cpp-powerpc64le-linux-gnu (4:14.2.0-1ubuntu1) ...
1783s Setting up gcc-14-powerpc64le-linux-gnu (14.2.0-17ubuntu1) ...
1783s Setting up liblbfgsb0:ppc64el (3.0+dfsg.4-1build1) ...
1783s Setting up libxft2:ppc64el (2.3.6-1build1) ...
1783s Setting up python3-scipy (1.14.1-4ubuntu1) ...
1793s Setting up libpython3-dev:ppc64el (3.13.1-1~exp2) ...
1793s Setting up g++-14-powerpc64le-linux-gnu (14.2.0-17ubuntu1) ...
1793s Setting up python3.13-dev (3.13.2-1) ...
1793s Setting up po-debconf (1.0.21+nmu1) ...
1793s Setting up libtk8.6:ppc64el (8.6.16-1) ...
1793s Setting up python3.12-tk (3.12.9-1) ...
1793s Setting up python3-mmtf (1.1.3-1) ...
1793s Setting up fonts-urw-base35 (20200910-8) ...
1794s Setting up libcairo2:ppc64el (1.18.2-2) ...
1794s Setting up python3.13-tk (3.13.2-1) ...
1794s Setting up gcc-14 (14.2.0-17ubuntu1) ...
1794s Setting up ncbi-blast+ (2.16.0+ds-6build1) ...
1794s Setting up python3-pil:ppc64el (11.1.0-5) ...
1795s Setting up gcc-powerpc64le-linux-gnu (4:14.2.0-1ubuntu1) ...
1795s Setting up libpython3-all-dev:ppc64el (3.13.1-1~exp2) ...
1795s Setting up sphinx-common (8.1.3-5) ...
1795s Setting up python3-dev (3.13.1-1~exp2) ...
1795s Setting up libxt6t64:ppc64el (1:1.2.1-1.2build1) ...
1795s Setting up netpbm (2:11.09.02-2) ...
1795s Setting up python3-igraph (0.11.8+ds-1build1) ...
1796s Setting up cpp (4:14.2.0-1ubuntu1) ...
1796s Setting up g++-14 (14.2.0-17ubuntu1) ...
1796s Setting up libcups2t64:ppc64el (2.4.11-0ubuntu2) ...
1796s Setting up g++-powerpc64le-linux-gnu (4:14.2.0-1ubuntu1) ...
1796s Setting up python3-all-dev (3.13.1-1~exp2) ...
1796s Setting up libgs10-common (10.04.0~dfsg1-2ubuntu1) ...
1796s Setting up tk8.6-blt2.5 (2.5.3+dfsg-7build1) ...
1796s Setting up libxmu6:ppc64el (2:1.1.3-3build2) ...
1796s Setting up python3-cairo (1.26.1-2build1) ...
1796s Setting up libtool (2.5.4-3build1) ...
1796s Setting up blt (2.5.3+dfsg-7build1) ...
1796s Setting up python3-tk:ppc64el (3.13.1-1) ...
1796s Setting up libxaw7:ppc64el (2:1.0.16-1) ...
1796s Setting up gcc (4:14.2.0-1ubuntu1) ...
1796s Setting up dh-autoreconf (20) ...
1796s Setting up python3-pil.imagetk:ppc64el (11.1.0-5) ...
1796s Setting up python3-rlpycairo (0.3.0-3) ...
1797s Setting up python3-reportlab (4.3.0-1) ...
1798s Setting up g++ (4:14.2.0-1ubuntu1) ...
1798s update-alternatives: using /usr/bin/g++ to provide /usr/bin/c++ (c++) in auto mode
1798s Setting up texlive-binaries (2024.20240313.70630+ds-5build2) ...
1798s update-alternatives: using /usr/bin/xdvi-xaw to provide /usr/bin/xdvi.bin (xdvi.bin) in auto mode
1798s update-alternatives: using /usr/bin/bibtex.original to provide /usr/bin/bibtex (bibtex) in auto mode
1799s Setting up build-essential (12.10ubuntu1) ...
1799s Setting up texlive-base (2024.20241115-1) ...
1800s tl-paper: setting paper size for dvips to a4: /var/lib/texmf/dvips/config/config-paper.ps
1800s tl-paper: setting paper size for dvipdfmx to a4: /var/lib/texmf/dvipdfmx/dvipdfmx-paper.cfg
1801s tl-paper: setting paper size for xdvi to a4: /var/lib/texmf/xdvi/XDvi-paper
1801s tl-paper: setting paper size for pdftex to a4: /var/lib/texmf/tex/generic/tex-ini-files/pdftexconfig.tex
1802s Setting up libgs10:ppc64el (10.04.0~dfsg1-2ubuntu1) ...
1802s Setting up debhelper (13.24.1ubuntu2) ...
1802s Setting up ghostscript (10.04.0~dfsg1-2ubuntu1) ...
1802s Setting up texlive-latex-base (2024.20241115-1) ...
1802s Setting up texlive-latex-recommended (2024.20241115-1) ...
1802s Setting up texlive-pictures (2024.20241115-1) ...
1802s Setting up texlive-fonts-recommended (2024.20241115-1) ...
1802s Setting up texlive-latex-extra (2024.20250114-1) ...
1802s Setting up python3-ufolib2 (0.17.0+dfsg1-1) ...
1802s Setting up libheif-plugin-aomdec:ppc64el (1.19.5-1build1) ...
1802s Setting up libheif-plugin-libde265:ppc64el (1.19.5-1build1) ...
1802s Setting up libheif1:ppc64el (1.19.5-1build1) ...
1802s Setting up python3-fonttools (4.55.3-2) ...
1805s Setting up libgd3:ppc64el (2.3.3-12ubuntu3) ...
1805s Setting up libmagickcore-7.q16-10:ppc64el (8:7.1.1.43+dfsg1-1) ...
1805s Setting up emboss-lib (6.6.0+dfsg-12ubuntu2) ...
1805s Setting up python3-matplotlib (3.8.3-3ubuntu2) ...
1810s Setting up libmagickwand-7.q16-10:ppc64el (8:7.1.1.43+dfsg1-1) ...
1810s Setting up emboss (6.6.0+dfsg-12ubuntu2) ...
1810s Setting up imagemagick-7.q16 (8:7.1.1.43+dfsg1-1) ...
1810s update-alternatives: using /usr/bin/compare-im7.q16 to provide /usr/bin/compare (compare) in auto mode
1810s update-alternatives: using /usr/bin/compare-im7.q16 to provide /usr/bin/compare-im7 (compare-im7) in auto mode
1810s update-alternatives: using /usr/bin/animate-im7.q16 to provide /usr/bin/animate (animate) in auto mode
1810s update-alternatives: using /usr/bin/animate-im7.q16 to provide /usr/bin/animate-im7 (animate-im7) in auto mode
1810s update-alternatives: using /usr/bin/convert-im7.q16 to provide /usr/bin/convert (convert) in auto mode
1810s update-alternatives: using /usr/bin/convert-im7.q16 to provide /usr/bin/convert-im7 (convert-im7) in auto mode
1810s update-alternatives: using /usr/bin/composite-im7.q16 to provide /usr/bin/composite (composite) in auto mode
1810s update-alternatives: using /usr/bin/composite-im7.q16 to provide /usr/bin/composite-im7 (composite-im7) in auto mode
1810s update-alternatives: using /usr/bin/conjure-im7.q16 to provide /usr/bin/conjure (conjure) in auto mode
1810s update-alternatives: using /usr/bin/conjure-im7.q16 to provide /usr/bin/conjure-im7 (conjure-im7) in auto mode
1810s update-alternatives: using /usr/bin/import-im7.q16 to provide /usr/bin/import (import) in auto mode
1810s update-alternatives: using /usr/bin/import-im7.q16 to provide /usr/bin/import-im7 (import-im7) in auto mode
1810s update-alternatives: using /usr/bin/identify-im7.q16 to provide /usr/bin/identify (identify) in auto mode
1810s update-alternatives: using /usr/bin/identify-im7.q16 to provide /usr/bin/identify-im7 (identify-im7) in auto mode
1810s update-alternatives: using /usr/bin/stream-im7.q16 to provide /usr/bin/stream (stream) in auto mode
1810s update-alternatives: using /usr/bin/stream-im7.q16 to provide /usr/bin/stream-im7 (stream-im7) in auto mode
1810s update-alternatives: using /usr/bin/display-im7.q16 to provide /usr/bin/display (display) in auto mode
1810s update-alternatives: using /usr/bin/display-im7.q16 to provide /usr/bin/display-im7 (display-im7) in auto mode
1810s update-alternatives: using /usr/bin/montage-im7.q16 to provide /usr/bin/montage (montage) in auto mode
1810s update-alternatives: using /usr/bin/montage-im7.q16 to provide /usr/bin/montage-im7 (montage-im7) in auto mode
1810s update-alternatives: using /usr/bin/mogrify-im7.q16 to provide /usr/bin/mogrify (mogrify) in auto mode
1810s update-alternatives: using /usr/bin/mogrify-im7.q16 to provide /usr/bin/mogrify-im7 (mogrify-im7) in auto mode
1810s update-alternatives: using /usr/bin/magick-im7.q16 to provide /usr/bin/magick (magick) in auto mode
1810s update-alternatives: warning: skip creation of /usr/share/man/man1/magick.1.gz because associated file /usr/share/man/man1/magick-im7.q16.1.gz (of link group magick) doesn't exist
1810s update-alternatives: using /usr/bin/magick-im7.q16 to provide /usr/bin/magick-im7 (magick-im7) in auto mode
1810s update-alternatives: warning: skip creation of /usr/share/man/man1/magick-im7.1.gz because associated file /usr/share/man/man1/magick-im7.q16.1.gz (of link group magick-im7) doesn't exist
1810s update-alternatives: using /usr/bin/magick-script-im7.q16 to provide /usr/bin/magick-script (magick-script) in auto mode
1810s update-alternatives: warning: skip creation of /usr/share/man/man1/magick-script.1.gz because associated file /usr/share/man/man1/magick-script-im7.q16.1.gz (of link group magick-script) doesn't exist
1810s update-alternatives: using /usr/bin/magick-script-im7.q16 to provide /usr/bin/magick-script-im7 (magick-script-im7) in auto mode
1810s update-alternatives: warning: skip creation of /usr/share/man/man1/magick-script-im7.1.gz because associated file /usr/share/man/man1/magick-script-im7.q16.1.gz (of link group magick-script-im7) doesn't exist
1810s Setting up hevea (2.36-2) ...
1810s Setting up imagemagick (8:7.1.1.43+dfsg1-1) ...
1810s Processing triggers for install-info (7.1.1-1) ...
1810s Processing triggers for libc-bin (2.40-4ubuntu1) ...
1810s Processing triggers for systemd (257.2-3ubuntu1) ...
1810s Processing triggers for man-db (2.13.0-1) ...
1815s Processing triggers for shared-mime-info (2.4-5) ...
1815s Warning: program compiled against libxml 212 using older 209
1815s Processing triggers for sgml-base (1.31) ...
1815s Setting up w3c-sgml-lib (1.3-3) ...
1858s Setting up docutils-common (0.21.2+dfsg-2) ...
1858s Setting up python3-biopython (1.85+dfsg-2) ...
1861s Setting up python3-biopython-sql (1.85+dfsg-2) ...
1862s Processing triggers for sgml-base (1.31) ...
1862s Setting up python3-docutils (0.21.2+dfsg-2) ...
1863s Setting up python3-sphinx (8.1.3-5) ...
1865s Setting up python3-sphinxcontrib.jquery (4.1-5) ...
1865s Setting up python3-numpydoc (1.8.0-1) ...
1865s Setting up python3-sphinx-rtd-theme (3.0.2+dfsg-2) ...
1865s Processing triggers for tex-common (6.18) ...
1866s Running updmap-sys. This may take some time... done.
1866s Running mktexlsr /var/lib/texmf ... done.
1866s Building format(s) --all.
1959s 	This may take some time... done.
1973s autopkgtest [18:12:50]: test full_suite: sh debian/tests/run-unit-test
1973s autopkgtest [18:12:50]: test full_suite: [-----------------------
1976s mkdir: created directory 'Bio'
1976s mkdir: created directory 'Bio/Align'
1976s mkdir: created directory 'Bio/Align/substitution_matrices'
1976s mkdir: created directory 'Bio/Align/substitution_matrices/data/'
1976s '/usr/lib/python3/dist-packages/Bio/Align/substitution_matrices/data/BENNER22' -> 'Bio/Align/substitution_matrices/data/BENNER22'
1976s '/usr/lib/python3/dist-packages/Bio/Align/substitution_matrices/data/BENNER6' -> 'Bio/Align/substitution_matrices/data/BENNER6'
1976s '/usr/lib/python3/dist-packages/Bio/Align/substitution_matrices/data/BENNER74' -> 'Bio/Align/substitution_matrices/data/BENNER74'
1976s '/usr/lib/python3/dist-packages/Bio/Align/substitution_matrices/data/BLASTN' -> 'Bio/Align/substitution_matrices/data/BLASTN'
1976s '/usr/lib/python3/dist-packages/Bio/Align/substitution_matrices/data/BLASTP' -> 'Bio/Align/substitution_matrices/data/BLASTP'
1976s '/usr/lib/python3/dist-packages/Bio/Align/substitution_matrices/data/BLOSUM45' -> 'Bio/Align/substitution_matrices/data/BLOSUM45'
1976s '/usr/lib/python3/dist-packages/Bio/Align/substitution_matrices/data/BLOSUM50' -> 'Bio/Align/substitution_matrices/data/BLOSUM50'
1976s '/usr/lib/python3/dist-packages/Bio/Align/substitution_matrices/data/BLOSUM62' -> 'Bio/Align/substitution_matrices/data/BLOSUM62'
1976s '/usr/lib/python3/dist-packages/Bio/Align/substitution_matrices/data/BLOSUM80' -> 'Bio/Align/substitution_matrices/data/BLOSUM80'
1976s '/usr/lib/python3/dist-packages/Bio/Align/substitution_matrices/data/BLOSUM90' -> 'Bio/Align/substitution_matrices/data/BLOSUM90'
1976s '/usr/lib/python3/dist-packages/Bio/Align/substitution_matrices/data/DAYHOFF' -> 'Bio/Align/substitution_matrices/data/DAYHOFF'
1976s '/usr/lib/python3/dist-packages/Bio/Align/substitution_matrices/data/FENG' -> 'Bio/Align/substitution_matrices/data/FENG'
1976s '/usr/lib/python3/dist-packages/Bio/Align/substitution_matrices/data/GENETIC' -> 'Bio/Align/substitution_matrices/data/GENETIC'
1976s '/usr/lib/python3/dist-packages/Bio/Align/substitution_matrices/data/GONNET1992' -> 'Bio/Align/substitution_matrices/data/GONNET1992'
1976s '/usr/lib/python3/dist-packages/Bio/Align/substitution_matrices/data/HOXD70' -> 'Bio/Align/substitution_matrices/data/HOXD70'
1976s '/usr/lib/python3/dist-packages/Bio/Align/substitution_matrices/data/JOHNSON' -> 'Bio/Align/substitution_matrices/data/JOHNSON'
1976s '/usr/lib/python3/dist-packages/Bio/Align/substitution_matrices/data/JONES' -> 'Bio/Align/substitution_matrices/data/JONES'
1976s '/usr/lib/python3/dist-packages/Bio/Align/substitution_matrices/data/LEVIN' -> 'Bio/Align/substitution_matrices/data/LEVIN'
1976s '/usr/lib/python3/dist-packages/Bio/Align/substitution_matrices/data/MCLACHLAN' -> 'Bio/Align/substitution_matrices/data/MCLACHLAN'
1976s '/usr/lib/python3/dist-packages/Bio/Align/substitution_matrices/data/MDM78' -> 'Bio/Align/substitution_matrices/data/MDM78'
1976s '/usr/lib/python3/dist-packages/Bio/Align/substitution_matrices/data/MEGABLAST' -> 'Bio/Align/substitution_matrices/data/MEGABLAST'
1976s '/usr/lib/python3/dist-packages/Bio/Align/substitution_matrices/data/NUC.4.4' -> 'Bio/Align/substitution_matrices/data/NUC.4.4'
1976s '/usr/lib/python3/dist-packages/Bio/Align/substitution_matrices/data/PAM250' -> 'Bio/Align/substitution_matrices/data/PAM250'
1976s '/usr/lib/python3/dist-packages/Bio/Align/substitution_matrices/data/PAM30' -> 'Bio/Align/substitution_matrices/data/PAM30'
1976s '/usr/lib/python3/dist-packages/Bio/Align/substitution_matrices/data/PAM70' -> 'Bio/Align/substitution_matrices/data/PAM70'
1976s '/usr/lib/python3/dist-packages/Bio/Align/substitution_matrices/data/RAO' -> 'Bio/Align/substitution_matrices/data/RAO'
1976s '/usr/lib/python3/dist-packages/Bio/Align/substitution_matrices/data/RISLER' -> 'Bio/Align/substitution_matrices/data/RISLER'
1976s '/usr/lib/python3/dist-packages/Bio/Align/substitution_matrices/data/SCHNEIDER' -> 'Bio/Align/substitution_matrices/data/SCHNEIDER'
1976s '/usr/lib/python3/dist-packages/Bio/Align/substitution_matrices/data/STR' -> 'Bio/Align/substitution_matrices/data/STR'
1976s '/usr/lib/python3/dist-packages/Bio/Align/substitution_matrices/data/TRANS' -> 'Bio/Align/substitution_matrices/data/TRANS'
1977s test_Ace ... ok
1977s test_Affy ... ok
1982s test_AlignIO ... ok
1982s test_AlignIO_ClustalIO ... ok
1982s test_AlignIO_EmbossIO ... ok
1982s test_AlignIO_FastaIO ... ok
1982s test_AlignIO_MauveIO ... ok
1982s test_AlignIO_PhylipIO ... ok
1982s test_AlignIO_convert ... ok
1982s test_AlignInfo ... ok
1983s test_Align_Alignment ... ok
1983s test_Align_a2m ... ok
1983s test_Align_bed ... ok
1983s test_Align_bigbed ... ok
1984s test_Align_bigmaf ... ok
1985s test_Align_bigpsl ... ok
1985s test_Align_chain ... ok
1985s test_Align_clustal ... ok
1992s test_Align_codonalign ... ok
1992s test_Align_emboss ... ok
1993s test_Align_exonerate ... ok
1993s test_Align_fasta ... ok
1993s test_Align_hhr ... ok
1994s test_Align_maf ... ok
1994s test_Align_mauve ... ok
1994s test_Align_msf ... ok
1994s test_Align_nexus ... ok
1995s test_Align_phylip ... ok
1995s test_Align_psl ... ok
1996s test_Align_sam ... ok
1998s test_Align_stockholm ... ok
1999s test_Align_tabular ... ok
1999s test_Application ... ok
1999s test_BioSQL_MySQLdb_online ... skipping. internet not available
1999s test_BioSQL_mysql_connector ... skipping. BioSQL test configuration file biosql.ini missing (see biosql.ini.sample)
1999s test_BioSQL_mysql_connector_online ... skipping. internet not available
1999s test_BioSQL_psycopg2_online ... skipping. internet not available
2006s test_BioSQL_sqlite3 ... ok
2006s test_BioSQL_sqlite3_online ... skipping. internet not available
2006s test_Blast_Record ... ok
2007s test_Blast_parser ... ok
2007s test_CAPS ... ok
2007s test_Chi2 ... ok
2009s test_ClustalOmega_tool ... ok
2009s test_Clustalw_tool ... skipping. Install clustalw or clustalw2 if you want to use it from Biopython.
2009s test_Cluster ... ok
2009s test_CodonTable ... ok
2009s test_ColorSpiral ... ok
2009s test_Compass ... ok
2011s test_Consensus ... ok
2012s test_Dialign_tool ... ok
2012s test_EMBL_unittest ... ok
2020s test_Emboss ... ok
2020s test_EmbossPrimer ... ok
2024s test_Entrez ... ok
2024s test_Entrez_online ... skipping. internet not available
2025s test_Entrez_parser ... ok
2025s test_Enzyme ... ok
2025s test_ExPASy ... skipping. internet not available
2025s test_Fasttree_tool ... ok
2025s test_File ... ok
2025s test_GenBank ... /usr/lib/python3/dist-packages/Bio/SeqIO/InsdcIO.py:600: BiopythonWarning: Annotation 'Sequence Read Archive: SRX001885, SRX001121, SRX001531, SRX001530, SRX001529' too long
2025s   warnings.warn(f"Annotation {text!r} too long", BiopythonWarning)
2025s ok
2028s test_GenomeDiagram ... Warn: Can't find .pfb for face 'Helvetica'
2031s ok
2033s test_GraphicsChromosome ... ok
2033s test_GraphicsDistribution ... ok
2034s test_GraphicsGeneral ... ok
2034s test_HMMCasino ... ok
2034s test_HMMGeneral ... ok
2035s test_KEGG ... ok
2035s test_KEGG_online ... skipping. internet not available
2042s test_KGML_graphics ... ok
2042s test_KGML_graphics_online ... skipping. internet not available
2043s test_KGML_nographics ... ok
2043s test_KeyWList ... ok
2043s test_LogisticRegression ... ok
2044s test_MafIO_index ... ok
2046s test_Mafft_tool ... ok
2047s test_MarkovModel ... ok
2047s test_Medline ... ok
2047s test_Muscle_tool ... skipping. Install MUSCLE if you want to use the Bio.Align.Applications wrapper.
2048s test_NCBIXML ... Exception ignored in: <generator object parse at 0x69a03f0cbdf0>
2048s Traceback (most recent call last):
2048s   File "/usr/lib/python3/dist-packages/Bio/Blast/NCBIXML.py", line 1319, in parse
2048s     expat_parser.Parse(NULL, True)
2048s xml.parsers.expat.ExpatError: unclosed token: line 320, column 0
2048s ok
2050s test_NCBI_BLAST_tools ... ok
2050s test_NCBI_qblast ... ok
2050s test_NMR ... ok
2050s test_NaiveBayes ... ok
2051s test_Nexus ... ok
2051s test_PAML_baseml ... ok
2052s test_PAML_codeml ... ok
2052s test_PAML_yn00 ... ok
2057s test_PDB_CEAligner ... ok
2060s test_PDB_DSSP ... ok
2060s test_PDB_Dice ... ok
2060s test_PDB_Disordered ... ok
2061s test_PDB_Exposure ... ok
2061s test_PDB_FragmentMapper ... ok
2064s test_PDB_KDTree ... ok
2064s test_PDB_MMCIF2Dict ... ok
2064s test_PDB_MMCIFIO ... ok
2066s test_PDB_MMCIFParser ... ok
2066s test_PDB_NACCESS ... ok
2067s test_PDB_PDBIO ... ok
2067s test_PDB_PDBList ... skipping. internet not available
2076s test_PDB_PDBMLParser ... ok
2077s test_PDB_PDBParser ... ok
2077s test_PDB_PSEA ... skipping. Download and install psea from ftp://ftp.lmcp.jussieu.fr/pub/sincris/software/protein/p-sea/. Make sure that psea is on path
2077s test_PDB_Polypeptide ... ok
2077s test_PDB_QCPSuperimposer ... ok
2081s test_PDB_SASA ... ok
2082s test_PDB_SMCRA ... ok
2082s test_PDB_Selection ... ok
2083s test_PDB_StructureAlignment ... ok
2083s test_PDB_Superimposer ... ok
2083s test_PDB_alphafold_db ... skipping. internet not available
2089s test_PDB_binary_cif ... /usr/lib/python3/dist-packages/Bio/PDB/StructureBuilder.py:137: PDBConstructionWarning: WARNING: Residue (' ', 1, ' ') redefined at line 7.
2089s   warnings.warn(
2089s /usr/lib/python3/dist-packages/Bio/PDB/StructureBuilder.py:137: PDBConstructionWarning: WARNING: Residue (' ', 15, ' ') redefined at line 144.
2089s   warnings.warn(
2089s /usr/lib/python3/dist-packages/Bio/PDB/StructureBuilder.py:137: PDBConstructionWarning: WARNING: Residue (' ', 15, ' ') redefined at line 153.
2089s   warnings.warn(
2089s /usr/lib/python3/dist-packages/Bio/PDB/StructureBuilder.py:137: PDBConstructionWarning: WARNING: Residue (' ', 1, ' ') redefined at line 0.
2089s   warnings.warn(
2089s /usr/lib/python3/dist-packages/Bio/PDB/StructureBuilder.py:137: PDBConstructionWarning: WARNING: Residue (' ', 15, ' ') redefined at line 0.
2089s   warnings.warn(
2089s ok
2102s test_PDB_internal_coords ... ok
2102s test_PDB_parse_pdb_header ... ok
2102s test_PDB_vectors ... ok
2102s test_PQR ... ok
2103s test_Pathway ... ok
2103s test_Phd ... ok
2103s test_Phylo ... ok
2104s test_PhyloXML ... ok
2104s test_Phylo_CDAO ... ok
2105s test_Phylo_NeXML ... ok
2107s test_Phylo_igraph ... ok
2111s test_Phylo_matplotlib ... ok
2111s test_Phylo_networkx ... ok
2112s test_PopGen_GenePop_nodepend ... ok
2114s test_Prank_tool ... ok
2115s test_Probcons_tool ... ok
2115s test_ProtParam ... ok
2116s test_RCSBFormats ... ok
2116s test_Restriction ... ok
2117s test_SCOP_Astral ... ok
2117s test_SCOP_Cla ... ok
2117s test_SCOP_Des ... ok
2118s test_SCOP_Dom ... ok
2118s test_SCOP_Hie ... ok
2118s test_SCOP_Raf ... ok
2119s test_SCOP_Residues ... ok
2119s test_SCOP_Scop ... ok
2119s test_SVDSuperimposer ... ok
2120s test_SearchIO_blast_tab ... ok
2120s test_SearchIO_blast_tab_index ... ok
2121s test_SearchIO_blast_xml ... ok
2122s test_SearchIO_blast_xml_index ... ok
2123s test_SearchIO_blat_psl ... ok
2123s test_SearchIO_blat_psl_index ... ok
2124s test_SearchIO_exonerate ... ok
2124s test_SearchIO_exonerate_text_index ... ok
2125s test_SearchIO_exonerate_vulgar_index ... ok
2125s test_SearchIO_fasta_m10 ... ok
2125s test_SearchIO_fasta_m10_index ... ok
2126s test_SearchIO_hhsuite2_text ... ok
2126s test_SearchIO_hmmer2_text ... ok
2127s test_SearchIO_hmmer2_text_index ... ok
2127s test_SearchIO_hmmer3_domtab ... ok
2128s test_SearchIO_hmmer3_domtab_index ... ok
2128s test_SearchIO_hmmer3_tab ... ok
2129s test_SearchIO_hmmer3_tab_index ... ok
2129s test_SearchIO_hmmer3_text ... ok
2129s test_SearchIO_hmmer3_text_index ... ok
2130s test_SearchIO_interproscan_xml ... ok
2130s test_SearchIO_model ... ok
2131s test_SearchIO_write ... ok
2132s test_SeqFeature ... ok
2155s test_SeqIO ... ok
2156s test_SeqIO_AbiIO ... ok
2156s test_SeqIO_FastaIO ... ok
2157s test_SeqIO_Gck ... ok
2157s test_SeqIO_Gfa ... ok
2157s test_SeqIO_Insdc ... ok
2158s test_SeqIO_NibIO ... ok
2161s test_SeqIO_PdbIO ... ok
2162s test_SeqIO_QualityIO ... ok
2162s test_SeqIO_SeqXML ... ok
2162s test_SeqIO_SffIO ... ok
2163s test_SeqIO_SnapGene ... ok
2165s test_SeqIO_TwoBitIO ... ok
2165s test_SeqIO_UniprotIO ... ok
2166s test_SeqIO_Xdna ... ok
2167s test_SeqIO_features ... ok
2193s test_SeqIO_index ... ok
2194s test_SeqIO_online ... skipping. internet not available
2194s test_SeqIO_write ... ok
2194s test_SeqRecord ... ok
2195s test_SeqUtils ... ok
2197s test_Seq_objs ... ok
2198s test_SwissProt ... ok
2199s test_TCoffee_tool ... ok
2200s test_TogoWS ... skipping. internet not available
2201s test_TreeConstruction ... ok
2201s test_Tutorial ... skipping. Could not find ../Doc/Tutorial/index.rst file
2201s test_UniGene ... ok
2202s test_UniProt ... skipping. internet not available
2202s test_UniProt_GOA ... ok
2203s test_align ... ok
2203s test_align_substitution_matrices ... ok
2207s test_bgzf ... ok
2207s test_cellosaurus ... ok
2217s test_codonalign ... ok
2218s test_geo ... ok
2218s test_kNN ... ok
2219s test_motifs ... ok
2220s test_motifs_online ... skipping. internet not available
2220s test_pairwise2 ... /usr/lib/python3/dist-packages/Bio/pairwise2.py:278: BiopythonDeprecationWarning: Bio.pairwise2 has been deprecated, and we intend to remove it in a future release of Biopython. As an alternative, please consider using Bio.Align.PairwiseAligner as a replacement, and contact the Biopython developers if you still need the Bio.pairwise2 module.
2220s   warnings.warn(
2220s ok
2220s test_pairwise2_no_C ... ok
2221s test_pairwise_aligner ... ok
2221s test_pairwise_alignment_map ... ok
2231s test_phenotype ... ok
2231s test_phenotype_fit ... ok
2231s test_phyml_tool ... skipping. Couldn't find the PhyML software. Install PhyML 3.0 or later if you want to use the Bio.Phylo.Applications wrapper.
2232s test_prodoc ... ok
2232s test_prosite ... ok
2233s test_raxml_tool ... skipping. Install RAxML (binary raxmlHPC) if you want to test the Bio.Phylo.Applications wrapper.
2233s test_samtools_tool ... skipping. Install samtools and correctly set the file path to the program if you want to use it from Biopython
2234s test_seq ... ok
2234s test_translate ... ok
2234s Skipping any tests requiring internet access
2234s Python version: 3.12.9 (main, Feb  5 2025, 01:31:18) [GCC 14.2.0]
2234s Operating system: posix linux
2234s ----------------------------------------------------------------------
2234s Ran 218 tests in 257.140 seconds
2234s 
2235s sys:1: ResourceWarning: unclosed file <_io.TextIOWrapper name='Fasta/protein_lib.fa' mode='rt' encoding='UTF-8'>
2235s sys:1: ResourceWarning: unclosed file <_io.TextIOWrapper name='Fasta/nucleotide_lib.fa' mode='rt' encoding='UTF-8'>
2236s test_Ace ... ok
2236s test_Affy ... ok
2241s test_AlignIO ... ok
2241s test_AlignIO_ClustalIO ... ok
2241s test_AlignIO_EmbossIO ... ok
2241s test_AlignIO_FastaIO ... ok
2241s test_AlignIO_MauveIO ... ok
2241s test_AlignIO_PhylipIO ... ok
2241s test_AlignIO_convert ... ok
2241s test_AlignInfo ... ok
2241s test_Align_Alignment ... ok
2241s test_Align_a2m ... ok
2242s test_Align_bed ... ok
2242s test_Align_bigbed ... ok
2243s test_Align_bigmaf ... ok
2243s test_Align_bigpsl ... ok
2243s test_Align_chain ... ok
2243s test_Align_clustal ... ok
2251s test_Align_codonalign ... ok
2251s test_Align_emboss ... ok
2251s test_Align_exonerate ... ok
2251s test_Align_fasta ... ok
2252s test_Align_hhr ... ok
2253s test_Align_maf ... ok
2253s test_Align_mauve ... ok
2253s test_Align_msf ... ok
2253s test_Align_nexus ... ok
2253s test_Align_phylip ... ok
2254s test_Align_psl ... ok
2254s test_Align_sam ... ok
2257s test_Align_stockholm ... ok
2257s test_Align_tabular ... ok
2257s test_Application ... ok
2257s test_BioSQL_MySQLdb_online ... skipping. internet not available
2257s test_BioSQL_mysql_connector ... skipping. BioSQL test configuration file biosql.ini missing (see biosql.ini.sample)
2257s test_BioSQL_mysql_connector_online ... skipping. internet not available
2257s test_BioSQL_psycopg2_online ... skipping. internet not available
2264s test_BioSQL_sqlite3 ... ok
2265s test_BioSQL_sqlite3_online ... skipping. internet not available
2265s test_Blast_Record ... ok
2265s test_Blast_parser ... ok
2266s test_CAPS ... ok
2266s test_Chi2 ... ok
2267s test_ClustalOmega_tool ... ok
2267s test_Clustalw_tool ... skipping. Install clustalw or clustalw2 if you want to use it from Biopython.
2267s test_Cluster ... ok
2267s test_CodonTable ... ok
2267s test_ColorSpiral ... ok
2267s test_Compass ... ok
2269s test_Consensus ... ok
2270s test_Dialign_tool ... ok
2270s test_EMBL_unittest ... ok
2277s test_Emboss ... ok
2277s test_EmbossPrimer ... ok
2281s test_Entrez ... ok
2281s test_Entrez_online ... skipping. internet not available
2282s test_Entrez_parser ... ok
2282s test_Enzyme ... ok
2282s test_ExPASy ... skipping. internet not available
2282s test_Fasttree_tool ... ok
2282s test_File ... ok
2282s test_GenBank ... /usr/lib/python3/dist-packages/Bio/SeqIO/InsdcIO.py:600: BiopythonWarning: Annotation 'Sequence Read Archive: SRX001885, SRX001121, SRX001531, SRX001530, SRX001529' too long
2282s   warnings.warn(f"Annotation {text!r} too long", BiopythonWarning)
2283s ok
2286s test_GenomeDiagram ... Warn: Can't find .pfb for face 'Helvetica'
2288s ok
2290s test_GraphicsChromosome ... ok
2290s test_GraphicsDistribution ... ok
2291s test_GraphicsGeneral ... ok
2291s test_HMMCasino ... ok
2291s test_HMMGeneral ... ok
2291s test_KEGG ... ok
2291s test_KEGG_online ... skipping. internet not available
2297s test_KGML_graphics ... ok
2298s test_KGML_graphics_online ... skipping. internet not available
2298s test_KGML_nographics ... ok
2298s test_KeyWList ... ok
2299s test_LogisticRegression ... ok
2300s test_MafIO_index ... ok
2302s test_Mafft_tool ... ok
2303s test_MarkovModel ... ok
2303s test_Medline ... ok
2303s test_Muscle_tool ... skipping. Install MUSCLE if you want to use the Bio.Align.Applications wrapper.
2303s test_NCBIXML ... Exception ignored in: <generator object parse at 0x71456133dfc0>
2303s Traceback (most recent call last):
2303s   File "/usr/lib/python3/dist-packages/Bio/Blast/NCBIXML.py", line 1319, in parse
2303s     expat_parser.Parse(NULL, True)
2303s xml.parsers.expat.ExpatError: unclosed token: line 320, column 0
2303s ok
2305s test_NCBI_BLAST_tools ... ok
2305s test_NCBI_qblast ... ok
2305s test_NMR ... ok
2305s test_NaiveBayes ... ok
2306s test_Nexus ... ok
2306s test_PAML_baseml ... ok
2307s test_PAML_codeml ... ok
2307s test_PAML_yn00 ... ok
2313s test_PDB_CEAligner ... ok
2315s test_PDB_DSSP ... ok
2315s test_PDB_Dice ... ok
2316s test_PDB_Disordered ... ok
2316s test_PDB_Exposure ... ok
2316s test_PDB_FragmentMapper ... ok
2319s test_PDB_KDTree ... ok
2319s test_PDB_MMCIF2Dict ... ok
2320s test_PDB_MMCIFIO ... ok
2321s test_PDB_MMCIFParser ... ok
2321s test_PDB_NACCESS ... ok
2322s test_PDB_PDBIO ... ok
2322s test_PDB_PDBList ... skipping. internet not available
2330s test_PDB_PDBMLParser ... ok
2330s test_PDB_PDBParser ... ok
2330s test_PDB_PSEA ... skipping. Download and install psea from ftp://ftp.lmcp.jussieu.fr/pub/sincris/software/protein/p-sea/. Make sure that psea is on path
2330s test_PDB_Polypeptide ... ok
2331s test_PDB_QCPSuperimposer ... ok
2335s test_PDB_SASA ... ok
2336s test_PDB_SMCRA ... ok
2336s test_PDB_Selection ... ok
2336s test_PDB_StructureAlignment ... ok
2336s test_PDB_Superimposer ... ok
2337s test_PDB_alphafold_db ... skipping. internet not available
2342s test_PDB_binary_cif ... /usr/lib/python3/dist-packages/Bio/PDB/StructureBuilder.py:137: PDBConstructionWarning: WARNING: Residue (' ', 1, ' ') redefined at line 7.
2342s   warnings.warn(
2342s /usr/lib/python3/dist-packages/Bio/PDB/StructureBuilder.py:137: PDBConstructionWarning: WARNING: Residue (' ', 15, ' ') redefined at line 144.
2342s   warnings.warn(
2342s /usr/lib/python3/dist-packages/Bio/PDB/StructureBuilder.py:137: PDBConstructionWarning: WARNING: Residue (' ', 15, ' ') redefined at line 153.
2342s   warnings.warn(
2342s /usr/lib/python3/dist-packages/Bio/PDB/StructureBuilder.py:137: PDBConstructionWarning: WARNING: Residue (' ', 1, ' ') redefined at line 0.
2342s   warnings.warn(
2342s /usr/lib/python3/dist-packages/Bio/PDB/StructureBuilder.py:137: PDBConstructionWarning: WARNING: Residue (' ', 15, ' ') redefined at line 0.
2342s   warnings.warn(
2342s ok
2353s test_PDB_internal_coords ... ok
2353s test_PDB_parse_pdb_header ... ok
2354s test_PDB_vectors ... ok
2354s test_PQR ... ok
2354s test_Pathway ... ok
2354s test_Phd ... ok
2354s test_Phylo ... ok
2355s test_PhyloXML ... ok
2355s test_Phylo_CDAO ... ok
2356s test_Phylo_NeXML ... ok
2356s test_Phylo_igraph ... ok
2359s test_Phylo_matplotlib ... ok
2359s test_Phylo_networkx ... ok
2360s test_PopGen_GenePop_nodepend ... ok
2362s test_Prank_tool ... ok
2363s test_Probcons_tool ... ok
2363s test_ProtParam ... ok
2365s test_RCSBFormats ... ok
2366s test_Restriction ... ok
2367s test_SCOP_Astral ... ok
2368s test_SCOP_Cla ... ok
2368s test_SCOP_Des ... ok
2369s test_SCOP_Dom ... ok
2369s test_SCOP_Hie ... ok
2369s test_SCOP_Raf ... ok
2370s test_SCOP_Residues ... ok
2370s test_SCOP_Scop ... ok
2370s test_SVDSuperimposer ... ok
2371s test_SearchIO_blast_tab ... ok
2371s test_SearchIO_blast_tab_index ... ok
2372s test_SearchIO_blast_xml ... ok
2373s test_SearchIO_blast_xml_index ... ok
2374s test_SearchIO_blat_psl ... ok
2374s test_SearchIO_blat_psl_index ... ok
2375s test_SearchIO_exonerate ... ok
2375s test_SearchIO_exonerate_text_index ... ok
2375s test_SearchIO_exonerate_vulgar_index ... ok
2376s test_SearchIO_fasta_m10 ... ok
2376s test_SearchIO_fasta_m10_index ... ok
2377s test_SearchIO_hhsuite2_text ... ok
2377s test_SearchIO_hmmer2_text ... ok
2378s test_SearchIO_hmmer2_text_index ... ok
2378s test_SearchIO_hmmer3_domtab ... ok
2378s test_SearchIO_hmmer3_domtab_index ... ok
2379s test_SearchIO_hmmer3_tab ... ok
2379s test_SearchIO_hmmer3_tab_index ... ok
2379s test_SearchIO_hmmer3_text ... ok
2380s test_SearchIO_hmmer3_text_index ... ok
2380s test_SearchIO_interproscan_xml ... ok
2381s test_SearchIO_model ... ok
2381s test_SearchIO_write ... ok
2381s test_SeqFeature ... ok
2402s test_SeqIO ... ok
2402s test_SeqIO_AbiIO ... ok
2403s test_SeqIO_FastaIO ... ok
2403s test_SeqIO_Gck ... ok
2403s test_SeqIO_Gfa ... ok
2404s test_SeqIO_Insdc ... ok
2404s test_SeqIO_NibIO ... ok
2407s test_SeqIO_PdbIO ... ok
2408s test_SeqIO_QualityIO ... ok
2408s test_SeqIO_SeqXML ... ok
2409s test_SeqIO_SffIO ... ok
2409s test_SeqIO_SnapGene ... ok
2411s test_SeqIO_TwoBitIO ... ok
2412s test_SeqIO_UniprotIO ... ok
2412s test_SeqIO_Xdna ... ok
2413s test_SeqIO_features ... ok
2436s test_SeqIO_index ... ok
2436s test_SeqIO_online ... skipping. internet not available
2437s test_SeqIO_write ... ok
2437s test_SeqRecord ... ok
2438s test_SeqUtils ... ok
2440s test_Seq_objs ... ok
2441s test_SwissProt ... ok
2442s test_TCoffee_tool ... ok
2443s test_TogoWS ... skipping. internet not available
2444s test_TreeConstruction ... ok
2444s test_Tutorial ... skipping. Could not find ../Doc/Tutorial/index.rst file
2445s test_UniGene ... ok
2445s test_UniProt ... skipping. internet not available
2446s test_UniProt_GOA ... ok
2446s test_align ... ok
2447s test_align_substitution_matrices ... ok
2451s test_bgzf ... ok
2451s test_cellosaurus ... ok
2460s test_codonalign ... ok
2461s test_geo ... ok
2461s test_kNN ... ok
2462s test_motifs ... ok
2463s test_motifs_online ... skipping. internet not available
2463s test_pairwise2 ... /usr/lib/python3/dist-packages/Bio/pairwise2.py:278: BiopythonDeprecationWarning: Bio.pairwise2 has been deprecated, and we intend to remove it in a future release of Biopython. As an alternative, please consider using Bio.Align.PairwiseAligner as a replacement, and contact the Biopython developers if you still need the Bio.pairwise2 module.
2463s   warnings.warn(
2463s ok
2464s test_pairwise2_no_C ... ok
2464s test_pairwise_aligner ... ok
2465s test_pairwise_alignment_map ... ok
2475s test_phenotype ... ok
2475s test_phenotype_fit ... ok
2476s test_phyml_tool ... skipping. Couldn't find the PhyML software. Install PhyML 3.0 or later if you want to use the Bio.Phylo.Applications wrapper.
2476s test_prodoc ... ok
2477s test_prosite ... ok
2477s test_raxml_tool ... skipping. Install RAxML (binary raxmlHPC) if you want to test the Bio.Phylo.Applications wrapper.
2478s test_samtools_tool ... skipping. Install samtools and correctly set the file path to the program if you want to use it from Biopython
2478s test_seq ... ok
2479s test_translate ... ok
2479s Skipping any tests requiring internet access
2479s Python version: 3.13.2 (main, Feb  5 2025, 01:23:35) [GCC 14.2.0]
2479s Operating system: posix linux
2479s ----------------------------------------------------------------------
2479s Ran 218 tests in 243.335 seconds
2479s 
2480s <sys>:0: ResourceWarning: unclosed file <_io.TextIOWrapper name='Fasta/protein_lib.fa' mode='rt' encoding='UTF-8'>
2480s <sys>:0: ResourceWarning: unclosed file <_io.TextIOWrapper name='Fasta/nucleotide_lib.fa' mode='rt' encoding='UTF-8'>
2481s autopkgtest [18:21:18]: test full_suite: -----------------------]
2482s full_suite           PASS
2482s autopkgtest [18:21:19]: test full_suite:  - - - - - - - - - - results - - - - - - - - - -
2482s autopkgtest [18:21:19]: @@@@@@@@@@@@@@@@@@@@ summary
2482s dependencies         PASS
2482s full_suite           PASS
2500s nova [W] Timed out waiting for 17f53a72-ce64-4689-9794-b1945ca41e62 to get deleted.
2500s nova [W] Using flock in prodstack6-ppc64el
2500s Creating nova instance adt-plucky-ppc64el-python-biopython-20250219-172152-juju-7f2275-prod-proposed-migration-environment-20-4f0860bc-69c2-46ab-b233-4cff83fbada6 from image adt/ubuntu-plucky-ppc64el-server-20250218.img (UUID 9318aa34-3d3c-43c5-86d2-aaf9390f2f5d)...
2500s nova [W] Timed out waiting for b32d9ace-c832-4e6c-aa8b-050d270bf605 to get deleted.