0s autopkgtest [21:27:28]: starting date and time: 2024-11-13 21:27:28+0000
  0s autopkgtest [21:27:28]: git checkout: 0acbae0a WIP show VirtSubproc stderr in real-time
  0s autopkgtest [21:27:28]: host juju-7f2275-prod-proposed-migration-environment-2; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.q0hdetdm/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:python3-defaults,src:python3-stdlib-extensions --apt-upgrade python-bcbio-gff --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 '--env=ADT_TEST_TRIGGERS=python3-defaults/3.12.7-1 python3-stdlib-extensions/3.12.7-1' -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest-ppc64el --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-2@bos03-ppc64el-10.secgroup --name adt-plucky-ppc64el-python-bcbio-gff-20241113-211001-juju-7f2275-prod-proposed-migration-environment-2-de3ce0fa-f8f8-4fce-90a7-5a5770c3b9bc --image adt/ubuntu-plucky-ppc64el-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-2 --net-id=net_prod-proposed-migration-ppc64el -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,keyserver.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/
119s autopkgtest [21:29:27]: testbed dpkg architecture: ppc64el
119s autopkgtest [21:29:27]: testbed apt version: 2.9.8
119s autopkgtest [21:29:27]: @@@@@@@@@@@@@@@@@@@@ test bed setup
120s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease [73.9 kB]
120s Get:2 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse Sources [17.2 kB]
120s Get:3 http://ftpmaster.internal/ubuntu plucky-proposed/universe Sources [970 kB]
120s Get:4 http://ftpmaster.internal/ubuntu plucky-proposed/restricted Sources [7016 B]
120s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/main Sources [101 kB]
120s Get:6 http://ftpmaster.internal/ubuntu plucky-proposed/main ppc64el Packages [110 kB]
120s Get:7 http://ftpmaster.internal/ubuntu plucky-proposed/universe ppc64el Packages [679 kB]
120s Get:8 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse ppc64el Packages [20.8 kB]
121s Fetched 1978 kB in 1s (1966 kB/s)
121s Reading package lists...
123s Reading package lists...
124s Building dependency tree...
124s Reading state information...
124s Calculating upgrade...
124s The following NEW packages will be installed:
124s   python3.13-gdbm
124s The following packages will be upgraded:
124s   bpfcc-tools bpftrace libbpfcc libgnutls30t64 libjson-glib-1.0-0
124s   libjson-glib-1.0-common libnewt0.52 libpython3-stdlib libutempter0 python3
124s   python3-bpfcc python3-gdbm python3-minimal python3-newt whiptail
124s 15 upgraded, 1 newly installed, 0 to remove and 0 not upgraded.
124s Need to get 4700 kB of archives.
124s After this operation, 215 kB of additional disk space will be used.
124s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed/main ppc64el python3-minimal ppc64el 3.12.7-1 [27.4 kB]
125s Get:2 http://ftpmaster.internal/ubuntu plucky-proposed/main ppc64el python3 ppc64el 3.12.7-1 [24.0 kB]
125s Get:3 http://ftpmaster.internal/ubuntu plucky-proposed/main ppc64el libpython3-stdlib ppc64el 3.12.7-1 [10.0 kB]
125s Get:4 http://ftpmaster.internal/ubuntu plucky/main ppc64el libgnutls30t64 ppc64el 3.8.8-2ubuntu1 [1072 kB]
125s Get:5 http://ftpmaster.internal/ubuntu plucky/main ppc64el python3-newt ppc64el 0.52.24-2ubuntu4 [21.8 kB]
125s Get:6 http://ftpmaster.internal/ubuntu plucky/main ppc64el libnewt0.52 ppc64el 0.52.24-2ubuntu4 [62.1 kB]
125s Get:7 http://ftpmaster.internal/ubuntu plucky/main ppc64el whiptail ppc64el 0.52.24-2ubuntu4 [19.5 kB]
125s Get:8 http://ftpmaster.internal/ubuntu plucky/main ppc64el python3.13-gdbm ppc64el 3.13.0-2 [31.5 kB]
125s Get:9 http://ftpmaster.internal/ubuntu plucky-proposed/main ppc64el python3-gdbm ppc64el 3.12.7-1 [8640 B]
125s Get:10 http://ftpmaster.internal/ubuntu plucky/main ppc64el libbpfcc ppc64el 0.30.0+ds-1ubuntu5 [696 kB]
125s Get:11 http://ftpmaster.internal/ubuntu plucky/main ppc64el python3-bpfcc all 0.30.0+ds-1ubuntu5 [40.4 kB]
125s Get:12 http://ftpmaster.internal/ubuntu plucky/main ppc64el bpfcc-tools all 0.30.0+ds-1ubuntu5 [697 kB]
125s Get:13 http://ftpmaster.internal/ubuntu plucky/main ppc64el bpftrace ppc64el 0.21.2-2ubuntu2 [1898 kB]
125s Get:14 http://ftpmaster.internal/ubuntu plucky/main ppc64el libjson-glib-1.0-common all 1.10.0+ds-3 [5586 B]
125s Get:15 http://ftpmaster.internal/ubuntu plucky/main ppc64el libjson-glib-1.0-0 ppc64el 1.10.0+ds-3 [76.0 kB]
125s Get:16 http://ftpmaster.internal/ubuntu plucky/main ppc64el libutempter0 ppc64el 1.2.1-4 [9850 B]
126s Fetched 4700 kB in 1s (5833 kB/s)
126s (Reading database ... 
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(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 73767 files and directories currently installed.)
126s Preparing to unpack .../python3-minimal_3.12.7-1_ppc64el.deb ...
126s Unpacking python3-minimal (3.12.7-1) over (3.12.6-0ubuntu1) ...
126s Setting up python3-minimal (3.12.7-1) ...
126s (Reading database ... 
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(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 73767 files and directories currently installed.)
126s Preparing to unpack .../python3_3.12.7-1_ppc64el.deb ...
126s Unpacking python3 (3.12.7-1) over (3.12.6-0ubuntu1) ...
126s Preparing to unpack .../libpython3-stdlib_3.12.7-1_ppc64el.deb ...
126s Unpacking libpython3-stdlib:ppc64el (3.12.7-1) over (3.12.6-0ubuntu1) ...
126s Preparing to unpack .../libgnutls30t64_3.8.8-2ubuntu1_ppc64el.deb ...
126s Unpacking libgnutls30t64:ppc64el (3.8.8-2ubuntu1) over (3.8.6-2ubuntu1) ...
126s Setting up libgnutls30t64:ppc64el (3.8.8-2ubuntu1) ...
127s (Reading database ... 
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(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 73767 files and directories currently installed.)
127s Preparing to unpack .../00-python3-newt_0.52.24-2ubuntu4_ppc64el.deb ...
127s Unpacking python3-newt:ppc64el (0.52.24-2ubuntu4) over (0.52.24-2ubuntu3) ...
127s Preparing to unpack .../01-libnewt0.52_0.52.24-2ubuntu4_ppc64el.deb ...
127s Unpacking libnewt0.52:ppc64el (0.52.24-2ubuntu4) over (0.52.24-2ubuntu3) ...
127s Preparing to unpack .../02-whiptail_0.52.24-2ubuntu4_ppc64el.deb ...
127s Unpacking whiptail (0.52.24-2ubuntu4) over (0.52.24-2ubuntu3) ...
127s Selecting previously unselected package python3.13-gdbm.
127s Preparing to unpack .../03-python3.13-gdbm_3.13.0-2_ppc64el.deb ...
127s Unpacking python3.13-gdbm (3.13.0-2) ...
127s Preparing to unpack .../04-python3-gdbm_3.12.7-1_ppc64el.deb ...
127s Unpacking python3-gdbm:ppc64el (3.12.7-1) over (3.12.6-1ubuntu1) ...
127s Preparing to unpack .../05-libbpfcc_0.30.0+ds-1ubuntu5_ppc64el.deb ...
127s Unpacking libbpfcc:ppc64el (0.30.0+ds-1ubuntu5) over (0.30.0+ds-1ubuntu4) ...
127s Preparing to unpack .../06-python3-bpfcc_0.30.0+ds-1ubuntu5_all.deb ...
127s Unpacking python3-bpfcc (0.30.0+ds-1ubuntu5) over (0.30.0+ds-1ubuntu4) ...
127s Preparing to unpack .../07-bpfcc-tools_0.30.0+ds-1ubuntu5_all.deb ...
127s Unpacking bpfcc-tools (0.30.0+ds-1ubuntu5) over (0.30.0+ds-1ubuntu4) ...
127s Preparing to unpack .../08-bpftrace_0.21.2-2ubuntu2_ppc64el.deb ...
127s Unpacking bpftrace (0.21.2-2ubuntu2) over (0.21.2-2) ...
127s Preparing to unpack .../09-libjson-glib-1.0-common_1.10.0+ds-3_all.deb ...
127s Unpacking libjson-glib-1.0-common (1.10.0+ds-3) over (1.10.0+ds-2) ...
127s Preparing to unpack .../10-libjson-glib-1.0-0_1.10.0+ds-3_ppc64el.deb ...
127s Unpacking libjson-glib-1.0-0:ppc64el (1.10.0+ds-3) over (1.10.0+ds-2) ...
127s Preparing to unpack .../11-libutempter0_1.2.1-4_ppc64el.deb ...
127s Unpacking libutempter0:ppc64el (1.2.1-4) over (1.2.1-3build1) ...
127s Setting up libnewt0.52:ppc64el (0.52.24-2ubuntu4) ...
127s Setting up libutempter0:ppc64el (1.2.1-4) ...
127s Setting up whiptail (0.52.24-2ubuntu4) ...
127s Setting up libjson-glib-1.0-common (1.10.0+ds-3) ...
127s Setting up libbpfcc:ppc64el (0.30.0+ds-1ubuntu5) ...
127s Setting up python3.13-gdbm (3.13.0-2) ...
127s Setting up libpython3-stdlib:ppc64el (3.12.7-1) ...
127s Setting up bpftrace (0.21.2-2ubuntu2) ...
127s Setting up python3 (3.12.7-1) ...
128s Setting up python3-newt:ppc64el (0.52.24-2ubuntu4) ...
128s Setting up libjson-glib-1.0-0:ppc64el (1.10.0+ds-3) ...
128s Setting up python3-bpfcc (0.30.0+ds-1ubuntu5) ...
128s Setting up python3-gdbm:ppc64el (3.12.7-1) ...
128s Setting up bpfcc-tools (0.30.0+ds-1ubuntu5) ...
128s Processing triggers for man-db (2.12.1-3) ...
130s Processing triggers for libc-bin (2.40-1ubuntu3) ...
130s Reading package lists...
130s Building dependency tree...
130s Reading state information...
131s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
131s Hit:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease
131s Hit:2 http://ftpmaster.internal/ubuntu plucky InRelease
131s Hit:3 http://ftpmaster.internal/ubuntu plucky-updates InRelease
131s Hit:4 http://ftpmaster.internal/ubuntu plucky-security InRelease
133s Reading package lists...
133s Reading package lists...
133s Building dependency tree...
133s Reading state information...
133s Calculating upgrade...
133s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
133s Reading package lists...
134s Building dependency tree...
134s Reading state information...
134s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
137s autopkgtest [21:29:45]: testbed running kernel: Linux 6.11.0-8-generic #8-Ubuntu SMP Mon Sep 16 13:49:23 UTC 2024
137s autopkgtest [21:29:45]: @@@@@@@@@@@@@@@@@@@@ apt-source python-bcbio-gff
139s Get:1 http://ftpmaster.internal/ubuntu plucky/universe python-bcbio-gff 0.7.1-2 (dsc) [2386 B]
139s Get:2 http://ftpmaster.internal/ubuntu plucky/universe python-bcbio-gff 0.7.1-2 (tar) [20.1 kB]
139s Get:3 http://ftpmaster.internal/ubuntu plucky/universe python-bcbio-gff 0.7.1-2 (diff) [23.9 kB]
139s gpgv: Signature made Tue Nov  5 22:11:23 2024 UTC
139s gpgv:                using RSA key 8F91B227C7D6F2B1948C8236793CF67E8F0D11DA
139s gpgv:                issuer "emollier@debian.org"
139s gpgv: Can't check signature: No public key
139s dpkg-source: warning: cannot verify inline signature for ./python-bcbio-gff_0.7.1-2.dsc: no acceptable signature found
139s autopkgtest [21:29:47]: testing package python-bcbio-gff version 0.7.1-2
139s autopkgtest [21:29:47]: build not needed
140s autopkgtest [21:29:48]: test run-unit-test: preparing testbed
141s Reading package lists...
141s Building dependency tree...
141s Reading state information...
142s Starting pkgProblemResolver with broken count: 0
142s Starting 2 pkgProblemResolver with broken count: 0
142s Done
142s The following additional packages will be installed:
142s   fontconfig-config fonts-dejavu-core fonts-dejavu-mono fonts-urw-base35
142s   libblas3 libcairo2 libdeflate0 libfontconfig1 libfontenc1 libgfortran5
142s   libgomp1 libgraphite2-3 libharfbuzz0b libimagequant0 libjbig0 libjpeg-turbo8
142s   libjpeg8 liblapack3 liblcms2-2 liblerc4 libopenjp2-7 libpixman-1-0
142s   libpython3.13-minimal libpython3.13-stdlib libraqm0 libsharpyuv0 libtiff6
142s   libwebp7 libwebpdemux2 libwebpmux3 libxcb-render0 libxcb-shm0 libxrender1
142s   python3-all python3-bcbio-gff python3-biopython python3-cairo
142s   python3-freetype python3-numpy python3-pil python3-reportlab
142s   python3-rlpycairo python3-six python3.13 python3.13-minimal sgml-base
142s   w3c-sgml-lib x11-common xfonts-encodings xfonts-utils xml-core
142s Suggested packages:
142s   fonts-freefont-otf | fonts-freefont-ttf fonts-texgyre liblcms2-utils
142s   python3-tk bwa clustalo clustalw dialign dssp emboss fasttree mafft muscle3
142s   phylip phyml prank probcons python3-mysqldb python3-matplotlib python3-mmtf
142s   python3-rdflib python3-psycopg2 python3-scipy raxml samtools t-coffee wise
142s   gcc gfortran python-numpy-doc python3-dev python3-pytest python-pil-doc
142s   pdf-viewer python3-egenix-mxtexttools python-reportlab-doc rl-accel
142s   rl-renderpm python3.13-venv python3.13-doc binfmt-support sgml-base-doc
142s   debhelper
142s Recommended packages:
142s   python-biopython-doc ncbi-blast+ python3-olefile fonts-dejavu-extra
143s The following NEW packages will be installed:
143s   autopkgtest-satdep fontconfig-config fonts-dejavu-core fonts-dejavu-mono
143s   fonts-urw-base35 libblas3 libcairo2 libdeflate0 libfontconfig1 libfontenc1
143s   libgfortran5 libgomp1 libgraphite2-3 libharfbuzz0b libimagequant0 libjbig0
143s   libjpeg-turbo8 libjpeg8 liblapack3 liblcms2-2 liblerc4 libopenjp2-7
143s   libpixman-1-0 libpython3.13-minimal libpython3.13-stdlib libraqm0
143s   libsharpyuv0 libtiff6 libwebp7 libwebpdemux2 libwebpmux3 libxcb-render0
143s   libxcb-shm0 libxrender1 python3-all python3-bcbio-gff python3-biopython
143s   python3-cairo python3-freetype python3-numpy python3-pil python3-reportlab
143s   python3-rlpycairo python3-six python3.13 python3.13-minimal sgml-base
143s   w3c-sgml-lib x11-common xfonts-encodings xfonts-utils xml-core
143s 0 upgraded, 52 newly installed, 0 to remove and 0 not upgraded.
143s Need to get 35.1 MB/35.1 MB of archives.
143s After this operation, 118 MB of additional disk space will be used.
143s Get:1 /tmp/autopkgtest.YSEoOV/1-autopkgtest-satdep.deb autopkgtest-satdep ppc64el 0 [728 B]
143s Get:2 http://ftpmaster.internal/ubuntu plucky/main ppc64el libpython3.13-minimal ppc64el 3.13.0-2 [881 kB]
143s Get:3 http://ftpmaster.internal/ubuntu plucky/main ppc64el python3.13-minimal ppc64el 3.13.0-2 [2302 kB]
143s Get:4 http://ftpmaster.internal/ubuntu plucky/main ppc64el sgml-base all 1.31 [11.4 kB]
143s Get:5 http://ftpmaster.internal/ubuntu plucky/main ppc64el fonts-dejavu-mono all 2.37-8 [502 kB]
143s Get:6 http://ftpmaster.internal/ubuntu plucky/main ppc64el fonts-dejavu-core all 2.37-8 [835 kB]
143s Get:7 http://ftpmaster.internal/ubuntu plucky/main ppc64el libfontenc1 ppc64el 1:1.1.8-1build1 [15.8 kB]
143s Get:8 http://ftpmaster.internal/ubuntu plucky/main ppc64el x11-common all 1:7.7+23ubuntu3 [21.7 kB]
143s Get:9 http://ftpmaster.internal/ubuntu plucky/main ppc64el xfonts-encodings all 1:1.0.5-0ubuntu2 [578 kB]
143s Get:10 http://ftpmaster.internal/ubuntu plucky/main ppc64el xfonts-utils ppc64el 1:7.7+7 [114 kB]
143s Get:11 http://ftpmaster.internal/ubuntu plucky/main ppc64el fonts-urw-base35 all 20200910-8 [11.0 MB]
144s Get:12 http://ftpmaster.internal/ubuntu plucky/main ppc64el fontconfig-config ppc64el 2.15.0-1.1ubuntu2 [37.4 kB]
144s Get:13 http://ftpmaster.internal/ubuntu plucky/main ppc64el libblas3 ppc64el 3.12.0-3build2 [222 kB]
144s Get:14 http://ftpmaster.internal/ubuntu plucky/main ppc64el libfontconfig1 ppc64el 2.15.0-1.1ubuntu2 [190 kB]
144s Get:15 http://ftpmaster.internal/ubuntu plucky/main ppc64el libpixman-1-0 ppc64el 0.44.0-3 [334 kB]
144s Get:16 http://ftpmaster.internal/ubuntu plucky/main ppc64el libxcb-render0 ppc64el 1.17.0-2 [17.2 kB]
144s Get:17 http://ftpmaster.internal/ubuntu plucky/main ppc64el libxcb-shm0 ppc64el 1.17.0-2 [5980 B]
144s Get:18 http://ftpmaster.internal/ubuntu plucky/main ppc64el libxrender1 ppc64el 1:0.9.10-1.1build1 [23.1 kB]
144s Get:19 http://ftpmaster.internal/ubuntu plucky/main ppc64el libcairo2 ppc64el 1.18.2-2 [747 kB]
144s Get:20 http://ftpmaster.internal/ubuntu plucky/main ppc64el libdeflate0 ppc64el 1.22-1 [63.3 kB]
144s Get:21 http://ftpmaster.internal/ubuntu plucky/main ppc64el libgfortran5 ppc64el 14.2.0-8ubuntu1 [571 kB]
144s Get:22 http://ftpmaster.internal/ubuntu plucky/main ppc64el libgomp1 ppc64el 14.2.0-8ubuntu1 [161 kB]
144s Get:23 http://ftpmaster.internal/ubuntu plucky/main ppc64el libgraphite2-3 ppc64el 1.3.14-2ubuntu1 [84.6 kB]
144s Get:24 http://ftpmaster.internal/ubuntu plucky/main ppc64el libharfbuzz0b ppc64el 10.0.1-1 [596 kB]
144s Get:25 http://ftpmaster.internal/ubuntu plucky/main ppc64el libimagequant0 ppc64el 2.18.0-1build1 [43.2 kB]
144s Get:26 http://ftpmaster.internal/ubuntu plucky/main ppc64el libjpeg-turbo8 ppc64el 2.1.5-2ubuntu2 [219 kB]
144s Get:27 http://ftpmaster.internal/ubuntu plucky/main ppc64el libjpeg8 ppc64el 8c-2ubuntu11 [2148 B]
144s Get:28 http://ftpmaster.internal/ubuntu plucky/main ppc64el liblapack3 ppc64el 3.12.0-3build2 [2806 kB]
144s Get:29 http://ftpmaster.internal/ubuntu plucky/main ppc64el liblcms2-2 ppc64el 2.16-2 [243 kB]
144s Get:30 http://ftpmaster.internal/ubuntu plucky/main ppc64el liblerc4 ppc64el 4.0.0+ds-4ubuntu2 [270 kB]
144s Get:31 http://ftpmaster.internal/ubuntu plucky/main ppc64el libpython3.13-stdlib ppc64el 3.13.0-2 [2148 kB]
144s Get:32 http://ftpmaster.internal/ubuntu plucky/main ppc64el libraqm0 ppc64el 0.10.1-1build1 [19.4 kB]
144s Get:33 http://ftpmaster.internal/ubuntu plucky/main ppc64el libsharpyuv0 ppc64el 1.4.0-0.1 [22.0 kB]
144s Get:34 http://ftpmaster.internal/ubuntu plucky/main ppc64el libjbig0 ppc64el 2.1-6.1ubuntu2 [35.9 kB]
144s Get:35 http://ftpmaster.internal/ubuntu plucky/main ppc64el libwebp7 ppc64el 1.4.0-0.1 [309 kB]
144s Get:36 http://ftpmaster.internal/ubuntu plucky/main ppc64el libtiff6 ppc64el 4.5.1+git230720-4ubuntu4 [272 kB]
144s Get:37 http://ftpmaster.internal/ubuntu plucky/main ppc64el libwebpdemux2 ppc64el 1.4.0-0.1 [14.1 kB]
144s Get:38 http://ftpmaster.internal/ubuntu plucky/main ppc64el libwebpmux3 ppc64el 1.4.0-0.1 [31.4 kB]
144s Get:39 http://ftpmaster.internal/ubuntu plucky/main ppc64el python3.13 ppc64el 3.13.0-2 [719 kB]
144s Get:40 http://ftpmaster.internal/ubuntu plucky-proposed/main ppc64el python3-all ppc64el 3.12.7-1 [888 B]
144s Get:41 http://ftpmaster.internal/ubuntu plucky/main ppc64el python3-numpy ppc64el 1:1.26.4+ds-11build1 [4434 kB]
145s Get:42 http://ftpmaster.internal/ubuntu plucky/main ppc64el libopenjp2-7 ppc64el 2.5.0-2ubuntu1 [246 kB]
145s Get:43 http://ftpmaster.internal/ubuntu plucky/main ppc64el python3-pil ppc64el 10.4.0-1ubuntu1 [581 kB]
145s Get:44 http://ftpmaster.internal/ubuntu plucky/main ppc64el python3-cairo ppc64el 1.26.1-2 [129 kB]
145s Get:45 http://ftpmaster.internal/ubuntu plucky/universe ppc64el python3-freetype all 2.5.1-1 [92.3 kB]
145s Get:46 http://ftpmaster.internal/ubuntu plucky/universe ppc64el python3-rlpycairo all 0.3.0-3 [9130 B]
145s Get:47 http://ftpmaster.internal/ubuntu plucky/universe ppc64el python3-reportlab all 4.2.5-1 [1107 kB]
145s Get:48 http://ftpmaster.internal/ubuntu plucky/main ppc64el xml-core all 0.19 [20.3 kB]
145s Get:49 http://ftpmaster.internal/ubuntu plucky/universe ppc64el w3c-sgml-lib all 1.3-3 [280 kB]
145s Get:50 http://ftpmaster.internal/ubuntu plucky/universe ppc64el python3-biopython ppc64el 1.84+dfsg-4 [1738 kB]
145s Get:51 http://ftpmaster.internal/ubuntu plucky/main ppc64el python3-six all 1.16.0-7 [13.1 kB]
145s Get:52 http://ftpmaster.internal/ubuntu plucky/universe ppc64el python3-bcbio-gff all 0.7.1-2 [33.9 kB]
145s Fetched 35.1 MB in 2s (15.1 MB/s)
145s Selecting previously unselected package libpython3.13-minimal:ppc64el.
145s (Reading database ... 
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145s Preparing to unpack .../00-libpython3.13-minimal_3.13.0-2_ppc64el.deb ...
145s Unpacking libpython3.13-minimal:ppc64el (3.13.0-2) ...
145s Selecting previously unselected package python3.13-minimal.
145s Preparing to unpack .../01-python3.13-minimal_3.13.0-2_ppc64el.deb ...
145s Unpacking python3.13-minimal (3.13.0-2) ...
146s Selecting previously unselected package sgml-base.
146s Preparing to unpack .../02-sgml-base_1.31_all.deb ...
146s Unpacking sgml-base (1.31) ...
146s Selecting previously unselected package fonts-dejavu-mono.
146s Preparing to unpack .../03-fonts-dejavu-mono_2.37-8_all.deb ...
146s Unpacking fonts-dejavu-mono (2.37-8) ...
146s Selecting previously unselected package fonts-dejavu-core.
146s Preparing to unpack .../04-fonts-dejavu-core_2.37-8_all.deb ...
146s Unpacking fonts-dejavu-core (2.37-8) ...
146s Selecting previously unselected package libfontenc1:ppc64el.
146s Preparing to unpack .../05-libfontenc1_1%3a1.1.8-1build1_ppc64el.deb ...
146s Unpacking libfontenc1:ppc64el (1:1.1.8-1build1) ...
146s Selecting previously unselected package x11-common.
146s Preparing to unpack .../06-x11-common_1%3a7.7+23ubuntu3_all.deb ...
146s Unpacking x11-common (1:7.7+23ubuntu3) ...
146s Selecting previously unselected package xfonts-encodings.
146s Preparing to unpack .../07-xfonts-encodings_1%3a1.0.5-0ubuntu2_all.deb ...
146s Unpacking xfonts-encodings (1:1.0.5-0ubuntu2) ...
146s Selecting previously unselected package xfonts-utils.
146s Preparing to unpack .../08-xfonts-utils_1%3a7.7+7_ppc64el.deb ...
146s Unpacking xfonts-utils (1:7.7+7) ...
146s Selecting previously unselected package fonts-urw-base35.
146s Preparing to unpack .../09-fonts-urw-base35_20200910-8_all.deb ...
146s Unpacking fonts-urw-base35 (20200910-8) ...
146s Selecting previously unselected package fontconfig-config.
146s Preparing to unpack .../10-fontconfig-config_2.15.0-1.1ubuntu2_ppc64el.deb ...
146s Unpacking fontconfig-config (2.15.0-1.1ubuntu2) ...
146s Selecting previously unselected package libblas3:ppc64el.
146s Preparing to unpack .../11-libblas3_3.12.0-3build2_ppc64el.deb ...
146s Unpacking libblas3:ppc64el (3.12.0-3build2) ...
146s Selecting previously unselected package libfontconfig1:ppc64el.
146s Preparing to unpack .../12-libfontconfig1_2.15.0-1.1ubuntu2_ppc64el.deb ...
146s Unpacking libfontconfig1:ppc64el (2.15.0-1.1ubuntu2) ...
146s Selecting previously unselected package libpixman-1-0:ppc64el.
146s Preparing to unpack .../13-libpixman-1-0_0.44.0-3_ppc64el.deb ...
146s Unpacking libpixman-1-0:ppc64el (0.44.0-3) ...
146s Selecting previously unselected package libxcb-render0:ppc64el.
146s Preparing to unpack .../14-libxcb-render0_1.17.0-2_ppc64el.deb ...
146s Unpacking libxcb-render0:ppc64el (1.17.0-2) ...
146s Selecting previously unselected package libxcb-shm0:ppc64el.
146s Preparing to unpack .../15-libxcb-shm0_1.17.0-2_ppc64el.deb ...
146s Unpacking libxcb-shm0:ppc64el (1.17.0-2) ...
146s Selecting previously unselected package libxrender1:ppc64el.
146s Preparing to unpack .../16-libxrender1_1%3a0.9.10-1.1build1_ppc64el.deb ...
146s Unpacking libxrender1:ppc64el (1:0.9.10-1.1build1) ...
146s Selecting previously unselected package libcairo2:ppc64el.
146s Preparing to unpack .../17-libcairo2_1.18.2-2_ppc64el.deb ...
146s Unpacking libcairo2:ppc64el (1.18.2-2) ...
146s Selecting previously unselected package libdeflate0:ppc64el.
146s Preparing to unpack .../18-libdeflate0_1.22-1_ppc64el.deb ...
146s Unpacking libdeflate0:ppc64el (1.22-1) ...
147s Selecting previously unselected package libgfortran5:ppc64el.
147s Preparing to unpack .../19-libgfortran5_14.2.0-8ubuntu1_ppc64el.deb ...
147s Unpacking libgfortran5:ppc64el (14.2.0-8ubuntu1) ...
147s Selecting previously unselected package libgomp1:ppc64el.
147s Preparing to unpack .../20-libgomp1_14.2.0-8ubuntu1_ppc64el.deb ...
147s Unpacking libgomp1:ppc64el (14.2.0-8ubuntu1) ...
147s Selecting previously unselected package libgraphite2-3:ppc64el.
147s Preparing to unpack .../21-libgraphite2-3_1.3.14-2ubuntu1_ppc64el.deb ...
147s Unpacking libgraphite2-3:ppc64el (1.3.14-2ubuntu1) ...
147s Selecting previously unselected package libharfbuzz0b:ppc64el.
147s Preparing to unpack .../22-libharfbuzz0b_10.0.1-1_ppc64el.deb ...
147s Unpacking libharfbuzz0b:ppc64el (10.0.1-1) ...
147s Selecting previously unselected package libimagequant0:ppc64el.
147s Preparing to unpack .../23-libimagequant0_2.18.0-1build1_ppc64el.deb ...
147s Unpacking libimagequant0:ppc64el (2.18.0-1build1) ...
147s Selecting previously unselected package libjpeg-turbo8:ppc64el.
147s Preparing to unpack .../24-libjpeg-turbo8_2.1.5-2ubuntu2_ppc64el.deb ...
147s Unpacking libjpeg-turbo8:ppc64el (2.1.5-2ubuntu2) ...
147s Selecting previously unselected package libjpeg8:ppc64el.
147s Preparing to unpack .../25-libjpeg8_8c-2ubuntu11_ppc64el.deb ...
147s Unpacking libjpeg8:ppc64el (8c-2ubuntu11) ...
147s Selecting previously unselected package liblapack3:ppc64el.
147s Preparing to unpack .../26-liblapack3_3.12.0-3build2_ppc64el.deb ...
147s Unpacking liblapack3:ppc64el (3.12.0-3build2) ...
147s Selecting previously unselected package liblcms2-2:ppc64el.
147s Preparing to unpack .../27-liblcms2-2_2.16-2_ppc64el.deb ...
147s Unpacking liblcms2-2:ppc64el (2.16-2) ...
147s Selecting previously unselected package liblerc4:ppc64el.
147s Preparing to unpack .../28-liblerc4_4.0.0+ds-4ubuntu2_ppc64el.deb ...
147s Unpacking liblerc4:ppc64el (4.0.0+ds-4ubuntu2) ...
147s Selecting previously unselected package libpython3.13-stdlib:ppc64el.
147s Preparing to unpack .../29-libpython3.13-stdlib_3.13.0-2_ppc64el.deb ...
147s Unpacking libpython3.13-stdlib:ppc64el (3.13.0-2) ...
147s Selecting previously unselected package libraqm0:ppc64el.
147s Preparing to unpack .../30-libraqm0_0.10.1-1build1_ppc64el.deb ...
147s Unpacking libraqm0:ppc64el (0.10.1-1build1) ...
147s Selecting previously unselected package libsharpyuv0:ppc64el.
147s Preparing to unpack .../31-libsharpyuv0_1.4.0-0.1_ppc64el.deb ...
147s Unpacking libsharpyuv0:ppc64el (1.4.0-0.1) ...
147s Selecting previously unselected package libjbig0:ppc64el.
147s Preparing to unpack .../32-libjbig0_2.1-6.1ubuntu2_ppc64el.deb ...
147s Unpacking libjbig0:ppc64el (2.1-6.1ubuntu2) ...
147s Selecting previously unselected package libwebp7:ppc64el.
147s Preparing to unpack .../33-libwebp7_1.4.0-0.1_ppc64el.deb ...
147s Unpacking libwebp7:ppc64el (1.4.0-0.1) ...
147s Selecting previously unselected package libtiff6:ppc64el.
147s Preparing to unpack .../34-libtiff6_4.5.1+git230720-4ubuntu4_ppc64el.deb ...
147s Unpacking libtiff6:ppc64el (4.5.1+git230720-4ubuntu4) ...
147s Selecting previously unselected package libwebpdemux2:ppc64el.
147s Preparing to unpack .../35-libwebpdemux2_1.4.0-0.1_ppc64el.deb ...
147s Unpacking libwebpdemux2:ppc64el (1.4.0-0.1) ...
147s Selecting previously unselected package libwebpmux3:ppc64el.
147s Preparing to unpack .../36-libwebpmux3_1.4.0-0.1_ppc64el.deb ...
147s Unpacking libwebpmux3:ppc64el (1.4.0-0.1) ...
147s Selecting previously unselected package python3.13.
147s Preparing to unpack .../37-python3.13_3.13.0-2_ppc64el.deb ...
147s Unpacking python3.13 (3.13.0-2) ...
147s Selecting previously unselected package python3-all.
147s Preparing to unpack .../38-python3-all_3.12.7-1_ppc64el.deb ...
147s Unpacking python3-all (3.12.7-1) ...
147s Selecting previously unselected package python3-numpy.
147s Preparing to unpack .../39-python3-numpy_1%3a1.26.4+ds-11build1_ppc64el.deb ...
147s Unpacking python3-numpy (1:1.26.4+ds-11build1) ...
148s Selecting previously unselected package libopenjp2-7:ppc64el.
148s Preparing to unpack .../40-libopenjp2-7_2.5.0-2ubuntu1_ppc64el.deb ...
148s Unpacking libopenjp2-7:ppc64el (2.5.0-2ubuntu1) ...
148s Selecting previously unselected package python3-pil:ppc64el.
148s Preparing to unpack .../41-python3-pil_10.4.0-1ubuntu1_ppc64el.deb ...
148s Unpacking python3-pil:ppc64el (10.4.0-1ubuntu1) ...
148s Selecting previously unselected package python3-cairo.
148s Preparing to unpack .../42-python3-cairo_1.26.1-2_ppc64el.deb ...
148s Unpacking python3-cairo (1.26.1-2) ...
148s Selecting previously unselected package python3-freetype.
148s Preparing to unpack .../43-python3-freetype_2.5.1-1_all.deb ...
148s Unpacking python3-freetype (2.5.1-1) ...
148s Selecting previously unselected package python3-rlpycairo.
148s Preparing to unpack .../44-python3-rlpycairo_0.3.0-3_all.deb ...
148s Unpacking python3-rlpycairo (0.3.0-3) ...
148s Selecting previously unselected package python3-reportlab.
148s Preparing to unpack .../45-python3-reportlab_4.2.5-1_all.deb ...
148s Unpacking python3-reportlab (4.2.5-1) ...
148s Selecting previously unselected package xml-core.
148s Preparing to unpack .../46-xml-core_0.19_all.deb ...
148s Unpacking xml-core (0.19) ...
148s Selecting previously unselected package w3c-sgml-lib.
148s Preparing to unpack .../47-w3c-sgml-lib_1.3-3_all.deb ...
148s Unpacking w3c-sgml-lib (1.3-3) ...
148s Selecting previously unselected package python3-biopython.
148s Preparing to unpack .../48-python3-biopython_1.84+dfsg-4_ppc64el.deb ...
148s Unpacking python3-biopython (1.84+dfsg-4) ...
148s Selecting previously unselected package python3-six.
148s Preparing to unpack .../49-python3-six_1.16.0-7_all.deb ...
148s Unpacking python3-six (1.16.0-7) ...
148s Selecting previously unselected package python3-bcbio-gff.
148s Preparing to unpack .../50-python3-bcbio-gff_0.7.1-2_all.deb ...
148s Unpacking python3-bcbio-gff (0.7.1-2) ...
148s Selecting previously unselected package autopkgtest-satdep.
148s Preparing to unpack .../51-1-autopkgtest-satdep.deb ...
148s Unpacking autopkgtest-satdep (0) ...
148s Setting up libgraphite2-3:ppc64el (1.3.14-2ubuntu1) ...
148s Setting up liblcms2-2:ppc64el (2.16-2) ...
148s Setting up libpixman-1-0:ppc64el (0.44.0-3) ...
148s Setting up libsharpyuv0:ppc64el (1.4.0-0.1) ...
148s Setting up liblerc4:ppc64el (4.0.0+ds-4ubuntu2) ...
148s Setting up libxrender1:ppc64el (1:0.9.10-1.1build1) ...
148s Setting up libxcb-render0:ppc64el (1.17.0-2) ...
148s Setting up x11-common (1:7.7+23ubuntu3) ...
149s Setting up libdeflate0:ppc64el (1.22-1) ...
149s Setting up libxcb-shm0:ppc64el (1.17.0-2) ...
149s Setting up libgomp1:ppc64el (14.2.0-8ubuntu1) ...
149s Setting up python3-freetype (2.5.1-1) ...
149s Setting up libjbig0:ppc64el (2.1-6.1ubuntu2) ...
149s Setting up python3-six (1.16.0-7) ...
150s Setting up libpython3.13-minimal:ppc64el (3.13.0-2) ...
150s Setting up libfontenc1:ppc64el (1:1.1.8-1build1) ...
150s Setting up libblas3:ppc64el (3.12.0-3build2) ...
150s update-alternatives: using /usr/lib/powerpc64le-linux-gnu/blas/libblas.so.3 to provide /usr/lib/powerpc64le-linux-gnu/libblas.so.3 (libblas.so.3-powerpc64le-linux-gnu) in auto mode
150s Setting up xfonts-encodings (1:1.0.5-0ubuntu2) ...
150s Setting up libimagequant0:ppc64el (2.18.0-1build1) ...
150s Setting up fonts-dejavu-mono (2.37-8) ...
150s Setting up fonts-dejavu-core (2.37-8) ...
150s Setting up libjpeg-turbo8:ppc64el (2.1.5-2ubuntu2) ...
150s Setting up libgfortran5:ppc64el (14.2.0-8ubuntu1) ...
150s Setting up libwebp7:ppc64el (1.4.0-0.1) ...
150s Setting up libopenjp2-7:ppc64el (2.5.0-2ubuntu1) ...
150s Setting up python3.13-minimal (3.13.0-2) ...
151s Setting up libharfbuzz0b:ppc64el (10.0.1-1) ...
151s Setting up sgml-base (1.31) ...
151s Setting up libwebpmux3:ppc64el (1.4.0-0.1) ...
151s Setting up libpython3.13-stdlib:ppc64el (3.13.0-2) ...
151s Setting up libjpeg8:ppc64el (8c-2ubuntu11) ...
151s Setting up liblapack3:ppc64el (3.12.0-3build2) ...
151s update-alternatives: using /usr/lib/powerpc64le-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/powerpc64le-linux-gnu/liblapack.so.3 (liblapack.so.3-powerpc64le-linux-gnu) in auto mode
151s Setting up python3.13 (3.13.0-2) ...
152s Setting up fontconfig-config (2.15.0-1.1ubuntu2) ...
152s Setting up libwebpdemux2:ppc64el (1.4.0-0.1) ...
152s Setting up python3-all (3.12.7-1) ...
152s Setting up xfonts-utils (1:7.7+7) ...
152s Setting up libraqm0:ppc64el (0.10.1-1build1) ...
152s Setting up python3-numpy (1:1.26.4+ds-11build1) ...
158s Setting up libtiff6:ppc64el (4.5.1+git230720-4ubuntu4) ...
158s Setting up xml-core (0.19) ...
158s Setting up libfontconfig1:ppc64el (2.15.0-1.1ubuntu2) ...
158s Setting up fonts-urw-base35 (20200910-8) ...
158s Setting up libcairo2:ppc64el (1.18.2-2) ...
158s Setting up python3-pil:ppc64el (10.4.0-1ubuntu1) ...
159s Setting up python3-cairo (1.26.1-2) ...
160s Setting up python3-rlpycairo (0.3.0-3) ...
160s Setting up python3-reportlab (4.2.5-1) ...
162s Processing triggers for libc-bin (2.40-1ubuntu3) ...
162s Processing triggers for systemd (256.5-2ubuntu4) ...
162s Processing triggers for man-db (2.12.1-3) ...
163s Processing triggers for sgml-base (1.31) ...
163s Setting up w3c-sgml-lib (1.3-3) ...
202s Setting up python3-biopython (1.84+dfsg-4) ...
205s Setting up python3-bcbio-gff (0.7.1-2) ...
205s Setting up autopkgtest-satdep (0) ...
209s (Reading database ... 77780 files and directories currently installed.)
209s Removing autopkgtest-satdep (0) ...
210s autopkgtest [21:30:58]: test run-unit-test: [-----------------------
211s Traceback (most recent call last):
211s   File "/tmp/autopkgtest.YSEoOV/autopkgtest_tmp/test_GFFSeqIOFeatureAdder.py", line 11, in <module>
211s     from Bio import SeqIO
211s   File "/usr/lib/python3/dist-packages/Bio/SeqIO/__init__.py", line 401, in <module>
211s     from Bio.SeqIO import TwoBitIO
211s   File "/usr/lib/python3/dist-packages/Bio/SeqIO/TwoBitIO.py", line 80, in <module>
211s     raise MissingPythonDependencyError(
211s     ...<2 lines>...
211s     ) from None
211s Bio.MissingPythonDependencyError: Install NumPy if you want to use Bio.SeqIO with TwoBit files.See http://www.numpy.org/
211s autopkgtest [21:30:59]: test run-unit-test: -----------------------]
211s run-unit-test        FAIL non-zero exit status 1
211s autopkgtest [21:30:59]: test run-unit-test:  - - - - - - - - - - results - - - - - - - - - -
212s autopkgtest [21:31:00]: test autodep8-python3: preparing testbed
294s autopkgtest [21:32:22]: testbed dpkg architecture: ppc64el
294s autopkgtest [21:32:22]: testbed apt version: 2.9.8
294s autopkgtest [21:32:22]: @@@@@@@@@@@@@@@@@@@@ test bed setup
295s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease [73.9 kB]
295s Get:2 http://ftpmaster.internal/ubuntu plucky-proposed/restricted Sources [7016 B]
295s Get:3 http://ftpmaster.internal/ubuntu plucky-proposed/universe Sources [970 kB]
296s Get:4 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse Sources [17.2 kB]
296s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/main Sources [101 kB]
296s Get:6 http://ftpmaster.internal/ubuntu plucky-proposed/main ppc64el Packages [110 kB]
296s Get:7 http://ftpmaster.internal/ubuntu plucky-proposed/universe ppc64el Packages [679 kB]
296s Get:8 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse ppc64el Packages [20.8 kB]
296s Fetched 1978 kB in 1s (1842 kB/s)
296s Reading package lists...
299s Reading package lists...
299s Building dependency tree...
299s Reading state information...
299s Calculating upgrade...
300s The following NEW packages will be installed:
300s   python3.13-gdbm
300s The following packages will be upgraded:
300s   bpfcc-tools bpftrace libbpfcc libgnutls30t64 libjson-glib-1.0-0
300s   libjson-glib-1.0-common libnewt0.52 libpython3-stdlib libutempter0 python3
300s   python3-bpfcc python3-gdbm python3-minimal python3-newt whiptail
300s 15 upgraded, 1 newly installed, 0 to remove and 0 not upgraded.
300s Need to get 4700 kB of archives.
300s After this operation, 215 kB of additional disk space will be used.
300s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed/main ppc64el python3-minimal ppc64el 3.12.7-1 [27.4 kB]
300s Get:2 http://ftpmaster.internal/ubuntu plucky-proposed/main ppc64el python3 ppc64el 3.12.7-1 [24.0 kB]
300s Get:3 http://ftpmaster.internal/ubuntu plucky-proposed/main ppc64el libpython3-stdlib ppc64el 3.12.7-1 [10.0 kB]
300s Get:4 http://ftpmaster.internal/ubuntu plucky/main ppc64el libgnutls30t64 ppc64el 3.8.8-2ubuntu1 [1072 kB]
300s Get:5 http://ftpmaster.internal/ubuntu plucky/main ppc64el python3-newt ppc64el 0.52.24-2ubuntu4 [21.8 kB]
300s Get:6 http://ftpmaster.internal/ubuntu plucky/main ppc64el libnewt0.52 ppc64el 0.52.24-2ubuntu4 [62.1 kB]
300s Get:7 http://ftpmaster.internal/ubuntu plucky/main ppc64el whiptail ppc64el 0.52.24-2ubuntu4 [19.5 kB]
300s Get:8 http://ftpmaster.internal/ubuntu plucky/main ppc64el python3.13-gdbm ppc64el 3.13.0-2 [31.5 kB]
300s Get:9 http://ftpmaster.internal/ubuntu plucky-proposed/main ppc64el python3-gdbm ppc64el 3.12.7-1 [8640 B]
300s Get:10 http://ftpmaster.internal/ubuntu plucky/main ppc64el libbpfcc ppc64el 0.30.0+ds-1ubuntu5 [696 kB]
300s Get:11 http://ftpmaster.internal/ubuntu plucky/main ppc64el python3-bpfcc all 0.30.0+ds-1ubuntu5 [40.4 kB]
300s Get:12 http://ftpmaster.internal/ubuntu plucky/main ppc64el bpfcc-tools all 0.30.0+ds-1ubuntu5 [697 kB]
300s Get:13 http://ftpmaster.internal/ubuntu plucky/main ppc64el bpftrace ppc64el 0.21.2-2ubuntu2 [1898 kB]
301s Get:14 http://ftpmaster.internal/ubuntu plucky/main ppc64el libjson-glib-1.0-common all 1.10.0+ds-3 [5586 B]
301s Get:15 http://ftpmaster.internal/ubuntu plucky/main ppc64el libjson-glib-1.0-0 ppc64el 1.10.0+ds-3 [76.0 kB]
301s Get:16 http://ftpmaster.internal/ubuntu plucky/main ppc64el libutempter0 ppc64el 1.2.1-4 [9850 B]
301s Fetched 4700 kB in 1s (6023 kB/s)
301s (Reading database ... 
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301s Preparing to unpack .../python3-minimal_3.12.7-1_ppc64el.deb ...
301s Unpacking python3-minimal (3.12.7-1) over (3.12.6-0ubuntu1) ...
301s Setting up python3-minimal (3.12.7-1) ...
302s (Reading database ... 
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302s Preparing to unpack .../python3_3.12.7-1_ppc64el.deb ...
302s Unpacking python3 (3.12.7-1) over (3.12.6-0ubuntu1) ...
302s Preparing to unpack .../libpython3-stdlib_3.12.7-1_ppc64el.deb ...
302s Unpacking libpython3-stdlib:ppc64el (3.12.7-1) over (3.12.6-0ubuntu1) ...
302s Preparing to unpack .../libgnutls30t64_3.8.8-2ubuntu1_ppc64el.deb ...
302s Unpacking libgnutls30t64:ppc64el (3.8.8-2ubuntu1) over (3.8.6-2ubuntu1) ...
302s Setting up libgnutls30t64:ppc64el (3.8.8-2ubuntu1) ...
302s (Reading database ... 
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302s Preparing to unpack .../00-python3-newt_0.52.24-2ubuntu4_ppc64el.deb ...
302s Unpacking python3-newt:ppc64el (0.52.24-2ubuntu4) over (0.52.24-2ubuntu3) ...
302s Preparing to unpack .../01-libnewt0.52_0.52.24-2ubuntu4_ppc64el.deb ...
302s Unpacking libnewt0.52:ppc64el (0.52.24-2ubuntu4) over (0.52.24-2ubuntu3) ...
302s Preparing to unpack .../02-whiptail_0.52.24-2ubuntu4_ppc64el.deb ...
302s Unpacking whiptail (0.52.24-2ubuntu4) over (0.52.24-2ubuntu3) ...
302s Selecting previously unselected package python3.13-gdbm.
302s Preparing to unpack .../03-python3.13-gdbm_3.13.0-2_ppc64el.deb ...
302s Unpacking python3.13-gdbm (3.13.0-2) ...
302s Preparing to unpack .../04-python3-gdbm_3.12.7-1_ppc64el.deb ...
302s Unpacking python3-gdbm:ppc64el (3.12.7-1) over (3.12.6-1ubuntu1) ...
302s Preparing to unpack .../05-libbpfcc_0.30.0+ds-1ubuntu5_ppc64el.deb ...
302s Unpacking libbpfcc:ppc64el (0.30.0+ds-1ubuntu5) over (0.30.0+ds-1ubuntu4) ...
302s Preparing to unpack .../06-python3-bpfcc_0.30.0+ds-1ubuntu5_all.deb ...
302s Unpacking python3-bpfcc (0.30.0+ds-1ubuntu5) over (0.30.0+ds-1ubuntu4) ...
302s Preparing to unpack .../07-bpfcc-tools_0.30.0+ds-1ubuntu5_all.deb ...
302s Unpacking bpfcc-tools (0.30.0+ds-1ubuntu5) over (0.30.0+ds-1ubuntu4) ...
303s Preparing to unpack .../08-bpftrace_0.21.2-2ubuntu2_ppc64el.deb ...
303s Unpacking bpftrace (0.21.2-2ubuntu2) over (0.21.2-2) ...
303s Preparing to unpack .../09-libjson-glib-1.0-common_1.10.0+ds-3_all.deb ...
303s Unpacking libjson-glib-1.0-common (1.10.0+ds-3) over (1.10.0+ds-2) ...
303s Preparing to unpack .../10-libjson-glib-1.0-0_1.10.0+ds-3_ppc64el.deb ...
303s Unpacking libjson-glib-1.0-0:ppc64el (1.10.0+ds-3) over (1.10.0+ds-2) ...
303s Preparing to unpack .../11-libutempter0_1.2.1-4_ppc64el.deb ...
303s Unpacking libutempter0:ppc64el (1.2.1-4) over (1.2.1-3build1) ...
303s Setting up libnewt0.52:ppc64el (0.52.24-2ubuntu4) ...
303s Setting up libutempter0:ppc64el (1.2.1-4) ...
303s Setting up whiptail (0.52.24-2ubuntu4) ...
303s Setting up libjson-glib-1.0-common (1.10.0+ds-3) ...
303s Setting up libbpfcc:ppc64el (0.30.0+ds-1ubuntu5) ...
303s Setting up python3.13-gdbm (3.13.0-2) ...
303s Setting up libpython3-stdlib:ppc64el (3.12.7-1) ...
303s Setting up bpftrace (0.21.2-2ubuntu2) ...
303s Setting up python3 (3.12.7-1) ...
303s Setting up python3-newt:ppc64el (0.52.24-2ubuntu4) ...
303s Setting up libjson-glib-1.0-0:ppc64el (1.10.0+ds-3) ...
303s Setting up python3-bpfcc (0.30.0+ds-1ubuntu5) ...
304s Setting up python3-gdbm:ppc64el (3.12.7-1) ...
304s Setting up bpfcc-tools (0.30.0+ds-1ubuntu5) ...
304s Processing triggers for man-db (2.12.1-3) ...
305s Processing triggers for libc-bin (2.40-1ubuntu3) ...
305s Reading package lists...
306s Building dependency tree...
306s Reading state information...
306s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
306s Hit:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease
306s Hit:2 http://ftpmaster.internal/ubuntu plucky InRelease
306s Hit:3 http://ftpmaster.internal/ubuntu plucky-updates InRelease
307s Hit:4 http://ftpmaster.internal/ubuntu plucky-security InRelease
308s Reading package lists...
308s Reading package lists...
308s Building dependency tree...
308s Reading state information...
309s Calculating upgrade...
309s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
309s Reading package lists...
310s Building dependency tree...
310s Reading state information...
310s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
314s Reading package lists...
314s Building dependency tree...
314s Reading state information...
315s Starting pkgProblemResolver with broken count: 0
315s Starting 2 pkgProblemResolver with broken count: 0
315s Done
315s The following additional packages will be installed:
315s   fontconfig-config fonts-dejavu-core fonts-dejavu-mono fonts-urw-base35
315s   libblas3 libcairo2 libdeflate0 libfontconfig1 libfontenc1 libgfortran5
315s   libgomp1 libgraphite2-3 libharfbuzz0b libimagequant0 libjbig0 libjpeg-turbo8
315s   libjpeg8 liblapack3 liblcms2-2 liblerc4 libopenjp2-7 libpixman-1-0
315s   libpython3.13-minimal libpython3.13-stdlib libraqm0 libsharpyuv0 libtiff6
315s   libwebp7 libwebpdemux2 libwebpmux3 libxcb-render0 libxcb-shm0 libxrender1
315s   python3-all python3-bcbio-gff python3-biopython python3-cairo
315s   python3-freetype python3-numpy python3-pil python3-reportlab
315s   python3-rlpycairo python3-six python3.13 python3.13-minimal sgml-base
315s   w3c-sgml-lib x11-common xfonts-encodings xfonts-utils xml-core
315s Suggested packages:
315s   fonts-freefont-otf | fonts-freefont-ttf fonts-texgyre liblcms2-utils
315s   python3-tk bwa clustalo clustalw dialign dssp emboss fasttree mafft muscle3
315s   phylip phyml prank probcons python3-mysqldb python3-matplotlib python3-mmtf
315s   python3-rdflib python3-psycopg2 python3-scipy raxml samtools t-coffee wise
315s   gcc gfortran python-numpy-doc python3-dev python3-pytest python-pil-doc
315s   pdf-viewer python3-egenix-mxtexttools python-reportlab-doc rl-accel
315s   rl-renderpm python3.13-venv python3.13-doc binfmt-support sgml-base-doc
315s   debhelper
315s Recommended packages:
315s   python-biopython-doc ncbi-blast+ python3-olefile fonts-dejavu-extra
315s The following NEW packages will be installed:
315s   autopkgtest-satdep fontconfig-config fonts-dejavu-core fonts-dejavu-mono
315s   fonts-urw-base35 libblas3 libcairo2 libdeflate0 libfontconfig1 libfontenc1
315s   libgfortran5 libgomp1 libgraphite2-3 libharfbuzz0b libimagequant0 libjbig0
315s   libjpeg-turbo8 libjpeg8 liblapack3 liblcms2-2 liblerc4 libopenjp2-7
315s   libpixman-1-0 libpython3.13-minimal libpython3.13-stdlib libraqm0
315s   libsharpyuv0 libtiff6 libwebp7 libwebpdemux2 libwebpmux3 libxcb-render0
315s   libxcb-shm0 libxrender1 python3-all python3-bcbio-gff python3-biopython
315s   python3-cairo python3-freetype python3-numpy python3-pil python3-reportlab
315s   python3-rlpycairo python3-six python3.13 python3.13-minimal sgml-base
315s   w3c-sgml-lib x11-common xfonts-encodings xfonts-utils xml-core
315s 0 upgraded, 52 newly installed, 0 to remove and 0 not upgraded.
315s Need to get 35.1 MB/35.1 MB of archives.
315s After this operation, 118 MB of additional disk space will be used.
315s Get:1 /tmp/autopkgtest.YSEoOV/2-autopkgtest-satdep.deb autopkgtest-satdep ppc64el 0 [724 B]
315s Get:2 http://ftpmaster.internal/ubuntu plucky/main ppc64el libpython3.13-minimal ppc64el 3.13.0-2 [881 kB]
316s Get:3 http://ftpmaster.internal/ubuntu plucky/main ppc64el python3.13-minimal ppc64el 3.13.0-2 [2302 kB]
317s Get:4 http://ftpmaster.internal/ubuntu plucky/main ppc64el sgml-base all 1.31 [11.4 kB]
317s Get:5 http://ftpmaster.internal/ubuntu plucky/main ppc64el fonts-dejavu-mono all 2.37-8 [502 kB]
317s Get:6 http://ftpmaster.internal/ubuntu plucky/main ppc64el fonts-dejavu-core all 2.37-8 [835 kB]
317s Get:7 http://ftpmaster.internal/ubuntu plucky/main ppc64el libfontenc1 ppc64el 1:1.1.8-1build1 [15.8 kB]
317s Get:8 http://ftpmaster.internal/ubuntu plucky/main ppc64el x11-common all 1:7.7+23ubuntu3 [21.7 kB]
317s Get:9 http://ftpmaster.internal/ubuntu plucky/main ppc64el xfonts-encodings all 1:1.0.5-0ubuntu2 [578 kB]
317s Get:10 http://ftpmaster.internal/ubuntu plucky/main ppc64el xfonts-utils ppc64el 1:7.7+7 [114 kB]
317s Get:11 http://ftpmaster.internal/ubuntu plucky/main ppc64el fonts-urw-base35 all 20200910-8 [11.0 MB]
319s Get:12 http://ftpmaster.internal/ubuntu plucky/main ppc64el fontconfig-config ppc64el 2.15.0-1.1ubuntu2 [37.4 kB]
319s Get:13 http://ftpmaster.internal/ubuntu plucky/main ppc64el libblas3 ppc64el 3.12.0-3build2 [222 kB]
319s Get:14 http://ftpmaster.internal/ubuntu plucky/main ppc64el libfontconfig1 ppc64el 2.15.0-1.1ubuntu2 [190 kB]
319s Get:15 http://ftpmaster.internal/ubuntu plucky/main ppc64el libpixman-1-0 ppc64el 0.44.0-3 [334 kB]
319s Get:16 http://ftpmaster.internal/ubuntu plucky/main ppc64el libxcb-render0 ppc64el 1.17.0-2 [17.2 kB]
319s Get:17 http://ftpmaster.internal/ubuntu plucky/main ppc64el libxcb-shm0 ppc64el 1.17.0-2 [5980 B]
319s Get:18 http://ftpmaster.internal/ubuntu plucky/main ppc64el libxrender1 ppc64el 1:0.9.10-1.1build1 [23.1 kB]
319s Get:19 http://ftpmaster.internal/ubuntu plucky/main ppc64el libcairo2 ppc64el 1.18.2-2 [747 kB]
319s Get:20 http://ftpmaster.internal/ubuntu plucky/main ppc64el libdeflate0 ppc64el 1.22-1 [63.3 kB]
319s Get:21 http://ftpmaster.internal/ubuntu plucky/main ppc64el libgfortran5 ppc64el 14.2.0-8ubuntu1 [571 kB]
319s Get:22 http://ftpmaster.internal/ubuntu plucky/main ppc64el libgomp1 ppc64el 14.2.0-8ubuntu1 [161 kB]
319s Get:23 http://ftpmaster.internal/ubuntu plucky/main ppc64el libgraphite2-3 ppc64el 1.3.14-2ubuntu1 [84.6 kB]
319s Get:24 http://ftpmaster.internal/ubuntu plucky/main ppc64el libharfbuzz0b ppc64el 10.0.1-1 [596 kB]
319s Get:25 http://ftpmaster.internal/ubuntu plucky/main ppc64el libimagequant0 ppc64el 2.18.0-1build1 [43.2 kB]
319s Get:26 http://ftpmaster.internal/ubuntu plucky/main ppc64el libjpeg-turbo8 ppc64el 2.1.5-2ubuntu2 [219 kB]
319s Get:27 http://ftpmaster.internal/ubuntu plucky/main ppc64el libjpeg8 ppc64el 8c-2ubuntu11 [2148 B]
319s Get:28 http://ftpmaster.internal/ubuntu plucky/main ppc64el liblapack3 ppc64el 3.12.0-3build2 [2806 kB]
319s Get:29 http://ftpmaster.internal/ubuntu plucky/main ppc64el liblcms2-2 ppc64el 2.16-2 [243 kB]
319s Get:30 http://ftpmaster.internal/ubuntu plucky/main ppc64el liblerc4 ppc64el 4.0.0+ds-4ubuntu2 [270 kB]
319s Get:31 http://ftpmaster.internal/ubuntu plucky/main ppc64el libpython3.13-stdlib ppc64el 3.13.0-2 [2148 kB]
319s Get:32 http://ftpmaster.internal/ubuntu plucky/main ppc64el libraqm0 ppc64el 0.10.1-1build1 [19.4 kB]
319s Get:33 http://ftpmaster.internal/ubuntu plucky/main ppc64el libsharpyuv0 ppc64el 1.4.0-0.1 [22.0 kB]
319s Get:34 http://ftpmaster.internal/ubuntu plucky/main ppc64el libjbig0 ppc64el 2.1-6.1ubuntu2 [35.9 kB]
319s Get:35 http://ftpmaster.internal/ubuntu plucky/main ppc64el libwebp7 ppc64el 1.4.0-0.1 [309 kB]
319s Get:36 http://ftpmaster.internal/ubuntu plucky/main ppc64el libtiff6 ppc64el 4.5.1+git230720-4ubuntu4 [272 kB]
319s Get:37 http://ftpmaster.internal/ubuntu plucky/main ppc64el libwebpdemux2 ppc64el 1.4.0-0.1 [14.1 kB]
319s Get:38 http://ftpmaster.internal/ubuntu plucky/main ppc64el libwebpmux3 ppc64el 1.4.0-0.1 [31.4 kB]
319s Get:39 http://ftpmaster.internal/ubuntu plucky/main ppc64el python3.13 ppc64el 3.13.0-2 [719 kB]
319s Get:40 http://ftpmaster.internal/ubuntu plucky-proposed/main ppc64el python3-all ppc64el 3.12.7-1 [888 B]
319s Get:41 http://ftpmaster.internal/ubuntu plucky/main ppc64el python3-numpy ppc64el 1:1.26.4+ds-11build1 [4434 kB]
319s Get:42 http://ftpmaster.internal/ubuntu plucky/main ppc64el libopenjp2-7 ppc64el 2.5.0-2ubuntu1 [246 kB]
319s Get:43 http://ftpmaster.internal/ubuntu plucky/main ppc64el python3-pil ppc64el 10.4.0-1ubuntu1 [581 kB]
319s Get:44 http://ftpmaster.internal/ubuntu plucky/main ppc64el python3-cairo ppc64el 1.26.1-2 [129 kB]
319s Get:45 http://ftpmaster.internal/ubuntu plucky/universe ppc64el python3-freetype all 2.5.1-1 [92.3 kB]
319s Get:46 http://ftpmaster.internal/ubuntu plucky/universe ppc64el python3-rlpycairo all 0.3.0-3 [9130 B]
319s Get:47 http://ftpmaster.internal/ubuntu plucky/universe ppc64el python3-reportlab all 4.2.5-1 [1107 kB]
319s Get:48 http://ftpmaster.internal/ubuntu plucky/main ppc64el xml-core all 0.19 [20.3 kB]
319s Get:49 http://ftpmaster.internal/ubuntu plucky/universe ppc64el w3c-sgml-lib all 1.3-3 [280 kB]
319s Get:50 http://ftpmaster.internal/ubuntu plucky/universe ppc64el python3-biopython ppc64el 1.84+dfsg-4 [1738 kB]
320s Get:51 http://ftpmaster.internal/ubuntu plucky/main ppc64el python3-six all 1.16.0-7 [13.1 kB]
320s Get:52 http://ftpmaster.internal/ubuntu plucky/universe ppc64el python3-bcbio-gff all 0.7.1-2 [33.9 kB]
320s Fetched 35.1 MB in 4s (8113 kB/s)
320s Selecting previously unselected package libpython3.13-minimal:ppc64el.
320s (Reading database ... 
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(Reading database ... 73775 files and directories currently installed.)
320s Preparing to unpack .../00-libpython3.13-minimal_3.13.0-2_ppc64el.deb ...
320s Unpacking libpython3.13-minimal:ppc64el (3.13.0-2) ...
320s Selecting previously unselected package python3.13-minimal.
320s Preparing to unpack .../01-python3.13-minimal_3.13.0-2_ppc64el.deb ...
320s Unpacking python3.13-minimal (3.13.0-2) ...
320s Selecting previously unselected package sgml-base.
320s Preparing to unpack .../02-sgml-base_1.31_all.deb ...
320s Unpacking sgml-base (1.31) ...
320s Selecting previously unselected package fonts-dejavu-mono.
320s Preparing to unpack .../03-fonts-dejavu-mono_2.37-8_all.deb ...
320s Unpacking fonts-dejavu-mono (2.37-8) ...
320s Selecting previously unselected package fonts-dejavu-core.
320s Preparing to unpack .../04-fonts-dejavu-core_2.37-8_all.deb ...
320s Unpacking fonts-dejavu-core (2.37-8) ...
320s Selecting previously unselected package libfontenc1:ppc64el.
320s Preparing to unpack .../05-libfontenc1_1%3a1.1.8-1build1_ppc64el.deb ...
320s Unpacking libfontenc1:ppc64el (1:1.1.8-1build1) ...
320s Selecting previously unselected package x11-common.
320s Preparing to unpack .../06-x11-common_1%3a7.7+23ubuntu3_all.deb ...
320s Unpacking x11-common (1:7.7+23ubuntu3) ...
320s Selecting previously unselected package xfonts-encodings.
320s Preparing to unpack .../07-xfonts-encodings_1%3a1.0.5-0ubuntu2_all.deb ...
320s Unpacking xfonts-encodings (1:1.0.5-0ubuntu2) ...
320s Selecting previously unselected package xfonts-utils.
320s Preparing to unpack .../08-xfonts-utils_1%3a7.7+7_ppc64el.deb ...
320s Unpacking xfonts-utils (1:7.7+7) ...
320s Selecting previously unselected package fonts-urw-base35.
320s Preparing to unpack .../09-fonts-urw-base35_20200910-8_all.deb ...
320s Unpacking fonts-urw-base35 (20200910-8) ...
321s Selecting previously unselected package fontconfig-config.
321s Preparing to unpack .../10-fontconfig-config_2.15.0-1.1ubuntu2_ppc64el.deb ...
321s Unpacking fontconfig-config (2.15.0-1.1ubuntu2) ...
321s Selecting previously unselected package libblas3:ppc64el.
321s Preparing to unpack .../11-libblas3_3.12.0-3build2_ppc64el.deb ...
321s Unpacking libblas3:ppc64el (3.12.0-3build2) ...
321s Selecting previously unselected package libfontconfig1:ppc64el.
321s Preparing to unpack .../12-libfontconfig1_2.15.0-1.1ubuntu2_ppc64el.deb ...
321s Unpacking libfontconfig1:ppc64el (2.15.0-1.1ubuntu2) ...
321s Selecting previously unselected package libpixman-1-0:ppc64el.
321s Preparing to unpack .../13-libpixman-1-0_0.44.0-3_ppc64el.deb ...
321s Unpacking libpixman-1-0:ppc64el (0.44.0-3) ...
321s Selecting previously unselected package libxcb-render0:ppc64el.
321s Preparing to unpack .../14-libxcb-render0_1.17.0-2_ppc64el.deb ...
321s Unpacking libxcb-render0:ppc64el (1.17.0-2) ...
321s Selecting previously unselected package libxcb-shm0:ppc64el.
321s Preparing to unpack .../15-libxcb-shm0_1.17.0-2_ppc64el.deb ...
321s Unpacking libxcb-shm0:ppc64el (1.17.0-2) ...
321s Selecting previously unselected package libxrender1:ppc64el.
321s Preparing to unpack .../16-libxrender1_1%3a0.9.10-1.1build1_ppc64el.deb ...
321s Unpacking libxrender1:ppc64el (1:0.9.10-1.1build1) ...
321s Selecting previously unselected package libcairo2:ppc64el.
321s Preparing to unpack .../17-libcairo2_1.18.2-2_ppc64el.deb ...
321s Unpacking libcairo2:ppc64el (1.18.2-2) ...
321s Selecting previously unselected package libdeflate0:ppc64el.
321s Preparing to unpack .../18-libdeflate0_1.22-1_ppc64el.deb ...
321s Unpacking libdeflate0:ppc64el (1.22-1) ...
321s Selecting previously unselected package libgfortran5:ppc64el.
321s Preparing to unpack .../19-libgfortran5_14.2.0-8ubuntu1_ppc64el.deb ...
321s Unpacking libgfortran5:ppc64el (14.2.0-8ubuntu1) ...
321s Selecting previously unselected package libgomp1:ppc64el.
321s Preparing to unpack .../20-libgomp1_14.2.0-8ubuntu1_ppc64el.deb ...
321s Unpacking libgomp1:ppc64el (14.2.0-8ubuntu1) ...
321s Selecting previously unselected package libgraphite2-3:ppc64el.
321s Preparing to unpack .../21-libgraphite2-3_1.3.14-2ubuntu1_ppc64el.deb ...
321s Unpacking libgraphite2-3:ppc64el (1.3.14-2ubuntu1) ...
321s Selecting previously unselected package libharfbuzz0b:ppc64el.
321s Preparing to unpack .../22-libharfbuzz0b_10.0.1-1_ppc64el.deb ...
321s Unpacking libharfbuzz0b:ppc64el (10.0.1-1) ...
321s Selecting previously unselected package libimagequant0:ppc64el.
321s Preparing to unpack .../23-libimagequant0_2.18.0-1build1_ppc64el.deb ...
321s Unpacking libimagequant0:ppc64el (2.18.0-1build1) ...
321s Selecting previously unselected package libjpeg-turbo8:ppc64el.
321s Preparing to unpack .../24-libjpeg-turbo8_2.1.5-2ubuntu2_ppc64el.deb ...
321s Unpacking libjpeg-turbo8:ppc64el (2.1.5-2ubuntu2) ...
321s Selecting previously unselected package libjpeg8:ppc64el.
321s Preparing to unpack .../25-libjpeg8_8c-2ubuntu11_ppc64el.deb ...
321s Unpacking libjpeg8:ppc64el (8c-2ubuntu11) ...
321s Selecting previously unselected package liblapack3:ppc64el.
321s Preparing to unpack .../26-liblapack3_3.12.0-3build2_ppc64el.deb ...
321s Unpacking liblapack3:ppc64el (3.12.0-3build2) ...
322s Selecting previously unselected package liblcms2-2:ppc64el.
322s Preparing to unpack .../27-liblcms2-2_2.16-2_ppc64el.deb ...
322s Unpacking liblcms2-2:ppc64el (2.16-2) ...
322s Selecting previously unselected package liblerc4:ppc64el.
322s Preparing to unpack .../28-liblerc4_4.0.0+ds-4ubuntu2_ppc64el.deb ...
322s Unpacking liblerc4:ppc64el (4.0.0+ds-4ubuntu2) ...
322s Selecting previously unselected package libpython3.13-stdlib:ppc64el.
322s Preparing to unpack .../29-libpython3.13-stdlib_3.13.0-2_ppc64el.deb ...
322s Unpacking libpython3.13-stdlib:ppc64el (3.13.0-2) ...
322s Selecting previously unselected package libraqm0:ppc64el.
322s Preparing to unpack .../30-libraqm0_0.10.1-1build1_ppc64el.deb ...
322s Unpacking libraqm0:ppc64el (0.10.1-1build1) ...
322s Selecting previously unselected package libsharpyuv0:ppc64el.
322s Preparing to unpack .../31-libsharpyuv0_1.4.0-0.1_ppc64el.deb ...
322s Unpacking libsharpyuv0:ppc64el (1.4.0-0.1) ...
322s Selecting previously unselected package libjbig0:ppc64el.
322s Preparing to unpack .../32-libjbig0_2.1-6.1ubuntu2_ppc64el.deb ...
322s Unpacking libjbig0:ppc64el (2.1-6.1ubuntu2) ...
322s Selecting previously unselected package libwebp7:ppc64el.
322s Preparing to unpack .../33-libwebp7_1.4.0-0.1_ppc64el.deb ...
322s Unpacking libwebp7:ppc64el (1.4.0-0.1) ...
322s Selecting previously unselected package libtiff6:ppc64el.
322s Preparing to unpack .../34-libtiff6_4.5.1+git230720-4ubuntu4_ppc64el.deb ...
322s Unpacking libtiff6:ppc64el (4.5.1+git230720-4ubuntu4) ...
322s Selecting previously unselected package libwebpdemux2:ppc64el.
322s Preparing to unpack .../35-libwebpdemux2_1.4.0-0.1_ppc64el.deb ...
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322s Selecting previously unselected package libwebpmux3:ppc64el.
322s Preparing to unpack .../36-libwebpmux3_1.4.0-0.1_ppc64el.deb ...
322s Unpacking libwebpmux3:ppc64el (1.4.0-0.1) ...
322s Selecting previously unselected package python3.13.
322s Preparing to unpack .../37-python3.13_3.13.0-2_ppc64el.deb ...
322s Unpacking python3.13 (3.13.0-2) ...
322s Selecting previously unselected package python3-all.
322s Preparing to unpack .../38-python3-all_3.12.7-1_ppc64el.deb ...
322s Unpacking python3-all (3.12.7-1) ...
322s Selecting previously unselected package python3-numpy.
322s Preparing to unpack .../39-python3-numpy_1%3a1.26.4+ds-11build1_ppc64el.deb ...
322s Unpacking python3-numpy (1:1.26.4+ds-11build1) ...
322s Selecting previously unselected package libopenjp2-7:ppc64el.
322s Preparing to unpack .../40-libopenjp2-7_2.5.0-2ubuntu1_ppc64el.deb ...
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322s Selecting previously unselected package python3-pil:ppc64el.
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322s Selecting previously unselected package python3-cairo.
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322s Unpacking python3-cairo (1.26.1-2) ...
322s Selecting previously unselected package python3-freetype.
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322s Selecting previously unselected package python3-reportlab.
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323s Selecting previously unselected package python3-biopython.
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323s Selecting previously unselected package python3-bcbio-gff.
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323s Selecting previously unselected package autopkgtest-satdep.
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323s Setting up libgraphite2-3:ppc64el (1.3.14-2ubuntu1) ...
323s Setting up liblcms2-2:ppc64el (2.16-2) ...
323s Setting up libpixman-1-0:ppc64el (0.44.0-3) ...
323s Setting up libsharpyuv0:ppc64el (1.4.0-0.1) ...
323s Setting up liblerc4:ppc64el (4.0.0+ds-4ubuntu2) ...
323s Setting up libxrender1:ppc64el (1:0.9.10-1.1build1) ...
323s Setting up libxcb-render0:ppc64el (1.17.0-2) ...
323s Setting up x11-common (1:7.7+23ubuntu3) ...
323s Setting up libdeflate0:ppc64el (1.22-1) ...
323s Setting up libxcb-shm0:ppc64el (1.17.0-2) ...
323s Setting up libgomp1:ppc64el (14.2.0-8ubuntu1) ...
323s Setting up python3-freetype (2.5.1-1) ...
324s Setting up libjbig0:ppc64el (2.1-6.1ubuntu2) ...
324s Setting up python3-six (1.16.0-7) ...
324s Setting up libpython3.13-minimal:ppc64el (3.13.0-2) ...
324s Setting up libfontenc1:ppc64el (1:1.1.8-1build1) ...
324s Setting up libblas3:ppc64el (3.12.0-3build2) ...
324s update-alternatives: using /usr/lib/powerpc64le-linux-gnu/blas/libblas.so.3 to provide /usr/lib/powerpc64le-linux-gnu/libblas.so.3 (libblas.so.3-powerpc64le-linux-gnu) in auto mode
324s Setting up xfonts-encodings (1:1.0.5-0ubuntu2) ...
324s Setting up libimagequant0:ppc64el (2.18.0-1build1) ...
324s Setting up fonts-dejavu-mono (2.37-8) ...
324s Setting up fonts-dejavu-core (2.37-8) ...
324s Setting up libjpeg-turbo8:ppc64el (2.1.5-2ubuntu2) ...
324s Setting up libgfortran5:ppc64el (14.2.0-8ubuntu1) ...
324s Setting up libwebp7:ppc64el (1.4.0-0.1) ...
324s Setting up libopenjp2-7:ppc64el (2.5.0-2ubuntu1) ...
324s Setting up python3.13-minimal (3.13.0-2) ...
325s Setting up libharfbuzz0b:ppc64el (10.0.1-1) ...
325s Setting up sgml-base (1.31) ...
325s Setting up libwebpmux3:ppc64el (1.4.0-0.1) ...
325s Setting up libpython3.13-stdlib:ppc64el (3.13.0-2) ...
325s Setting up libjpeg8:ppc64el (8c-2ubuntu11) ...
325s Setting up liblapack3:ppc64el (3.12.0-3build2) ...
325s update-alternatives: using /usr/lib/powerpc64le-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/powerpc64le-linux-gnu/liblapack.so.3 (liblapack.so.3-powerpc64le-linux-gnu) in auto mode
325s Setting up python3.13 (3.13.0-2) ...
326s Setting up fontconfig-config (2.15.0-1.1ubuntu2) ...
327s Setting up libwebpdemux2:ppc64el (1.4.0-0.1) ...
327s Setting up python3-all (3.12.7-1) ...
327s Setting up xfonts-utils (1:7.7+7) ...
327s Setting up libraqm0:ppc64el (0.10.1-1build1) ...
327s Setting up python3-numpy (1:1.26.4+ds-11build1) ...
331s Setting up libtiff6:ppc64el (4.5.1+git230720-4ubuntu4) ...
331s Setting up xml-core (0.19) ...
332s Setting up libfontconfig1:ppc64el (2.15.0-1.1ubuntu2) ...
332s Setting up fonts-urw-base35 (20200910-8) ...
332s Setting up libcairo2:ppc64el (1.18.2-2) ...
332s Setting up python3-pil:ppc64el (10.4.0-1ubuntu1) ...
333s Setting up python3-cairo (1.26.1-2) ...
333s Setting up python3-rlpycairo (0.3.0-3) ...
333s Setting up python3-reportlab (4.2.5-1) ...
335s Processing triggers for libc-bin (2.40-1ubuntu3) ...
335s Processing triggers for systemd (256.5-2ubuntu4) ...
335s Processing triggers for man-db (2.12.1-3) ...
336s Processing triggers for sgml-base (1.31) ...
336s Setting up w3c-sgml-lib (1.3-3) ...
377s Setting up python3-biopython (1.84+dfsg-4) ...
380s Setting up python3-bcbio-gff (0.7.1-2) ...
381s Setting up autopkgtest-satdep (0) ...
384s (Reading database ... 77780 files and directories currently installed.)
384s Removing autopkgtest-satdep (0) ...
386s autopkgtest [21:33:54]: test autodep8-python3: set -e ; for py in $(py3versions -r 2>/dev/null) ; do cd "$AUTOPKGTEST_TMP" ; echo "Testing with $py:" ; $py -c "import BCBio.GFF; print(BCBio.GFF)" ; done
386s autopkgtest [21:33:54]: test autodep8-python3: [-----------------------
386s Testing with python3.13:
386s Traceback (most recent call last):
386s   File "<string>", line 1, in <module>
386s     import BCBio.GFF; print(BCBio.GFF)
386s     ^^^^^^^^^^^^^^^^
386s   File "/usr/lib/python3/dist-packages/BCBio/GFF/__init__.py", line 3, in <module>
386s     from BCBio.GFF.GFFParser import GFFParser, DiscoGFFParser, GFFExaminer, parse, parse_simple
386s   File "/usr/lib/python3/dist-packages/BCBio/GFF/GFFParser.py", line 44, in <module>
386s     from Bio import SeqIO
386s   File "/usr/lib/python3/dist-packages/Bio/SeqIO/__init__.py", line 401, in <module>
386s     from Bio.SeqIO import TwoBitIO
386s   File "/usr/lib/python3/dist-packages/Bio/SeqIO/TwoBitIO.py", line 80, in <module>
386s     raise MissingPythonDependencyError(
386s     ...<2 lines>...
386s     ) from None
386s Bio.MissingPythonDependencyError: Install NumPy if you want to use Bio.SeqIO with TwoBit files.See http://www.numpy.org/
387s autopkgtest [21:33:55]: test autodep8-python3: -----------------------]
387s autopkgtest [21:33:55]: test autodep8-python3:  - - - - - - - - - - results - - - - - - - - - -
387s autodep8-python3     FAIL non-zero exit status 1
387s autopkgtest [21:33:55]: @@@@@@@@@@@@@@@@@@@@ summary
387s run-unit-test        FAIL non-zero exit status 1
387s autodep8-python3     FAIL non-zero exit status 1
392s virt: nova [W] Using flock in prodstack6-ppc64el
392s virt: Creating nova instance adt-plucky-ppc64el-python-bcbio-gff-20241113-211001-juju-7f2275-prod-proposed-migration-environment-2-de3ce0fa-f8f8-4fce-90a7-5a5770c3b9bc from image adt/ubuntu-plucky-ppc64el-server-20241113.img (UUID 0c5715b6-5cca-4485-b8bf-b85dfd917a5f)...
392s virt: nova [W] Using flock in prodstack6-ppc64el
392s virt: Creating nova instance adt-plucky-ppc64el-python-bcbio-gff-20241113-211001-juju-7f2275-prod-proposed-migration-environment-2-de3ce0fa-f8f8-4fce-90a7-5a5770c3b9bc from image adt/ubuntu-plucky-ppc64el-server-20241113.img (UUID 0c5715b6-5cca-4485-b8bf-b85dfd917a5f)...