0s autopkgtest [00:24:50]: starting date and time: 2025-01-10 00:24:50+0000 0s autopkgtest [00:24:50]: git checkout: 325255d2 Merge branch 'pin-any-arch' into 'ubuntu/production' 0s autopkgtest [00:24:50]: host juju-7f2275-prod-proposed-migration-environment-15; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.8yr6hfsq/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:libpng1.6 --apt-upgrade pymol --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=libpng1.6/1.6.45-1 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest-ppc64el --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-15@bos03-ppc64el-14.secgroup --name adt-plucky-ppc64el-pymol-20250110-002449-juju-7f2275-prod-proposed-migration-environment-15-22149f37-d06f-4a78-8017-3197571f8567 --image adt/ubuntu-plucky-ppc64el-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-15 --net-id=net_prod-proposed-migration-ppc64el -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,keyserver.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com,radosgw.ps5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/ 66s autopkgtest [00:25:56]: testbed dpkg architecture: ppc64el 66s autopkgtest [00:25:56]: testbed apt version: 2.9.18 66s autopkgtest [00:25:56]: @@@@@@@@@@@@@@@@@@@@ test bed setup 67s autopkgtest [00:25:57]: testbed release detected to be: None 67s autopkgtest [00:25:57]: updating testbed package index (apt update) 68s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease [73.9 kB] 68s Hit:2 http://ftpmaster.internal/ubuntu plucky InRelease 68s Hit:3 http://ftpmaster.internal/ubuntu plucky-updates InRelease 68s Hit:4 http://ftpmaster.internal/ubuntu plucky-security InRelease 72s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/restricted Sources [9708 B] 72s Get:6 http://ftpmaster.internal/ubuntu plucky-proposed/main Sources [126 kB] 72s Get:7 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse Sources [15.0 kB] 72s Get:8 http://ftpmaster.internal/ubuntu plucky-proposed/universe Sources [778 kB] 72s Get:9 http://ftpmaster.internal/ubuntu plucky-proposed/main ppc64el Packages [268 kB] 72s Get:10 http://ftpmaster.internal/ubuntu plucky-proposed/restricted ppc64el Packages [756 B] 72s Get:11 http://ftpmaster.internal/ubuntu plucky-proposed/universe ppc64el Packages [999 kB] 72s Get:12 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse ppc64el Packages [5088 B] 73s Fetched 2275 kB in 5s (440 kB/s) 73s Reading package lists... 74s Reading package lists... 74s Building dependency tree... 74s Reading state information... 74s Calculating upgrade... 75s The following packages will be upgraded: 75s firmware-sof-signed 75s 1 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 75s Need to get 7093 kB of archives. 75s After this operation, 0 B of additional disk space will be used. 75s Get:1 http://ftpmaster.internal/ubuntu plucky/main ppc64el firmware-sof-signed all 2024.06-1ubuntu4 [7093 kB] 77s Fetched 7093 kB in 1s (7792 kB/s) 77s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74025 files and directories currently installed.) 77s Preparing to unpack .../firmware-sof-signed_2024.06-1ubuntu4_all.deb ... 77s Unpacking firmware-sof-signed (2024.06-1ubuntu4) over (2024.06-1ubuntu3) ... 77s Setting up firmware-sof-signed (2024.06-1ubuntu4) ... 77s Reading package lists... 77s Building dependency tree... 77s Reading state information... 77s 0 upgraded, 0 newly installed, 0 to remove and 1 not upgraded. 77s autopkgtest [00:26:07]: upgrading testbed (apt dist-upgrade and autopurge) 77s Reading package lists... 77s Building dependency tree... 77s Reading state information... 77s Calculating upgrade...Starting pkgProblemResolver with broken count: 0 77s Starting 2 pkgProblemResolver with broken count: 0 77s Done 78s Entering ResolveByKeep 78s 78s The following packages will be upgraded: 78s libpng16-16t64 78s 1 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 78s Need to get 238 kB of archives. 78s After this operation, 1024 B disk space will be freed. 78s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed/main ppc64el libpng16-16t64 ppc64el 1.6.45-1 [238 kB] 78s Fetched 238 kB in 0s (589 kB/s) 79s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74025 files and directories currently installed.) 79s Preparing to unpack .../libpng16-16t64_1.6.45-1_ppc64el.deb ... 79s Unpacking libpng16-16t64:ppc64el (1.6.45-1) over (1.6.44-3) ... 79s Setting up libpng16-16t64:ppc64el (1.6.45-1) ... 79s Processing triggers for libc-bin (2.40-4ubuntu1) ... 79s Reading package lists... 79s Building dependency tree... 79s Reading state information... 79s Starting pkgProblemResolver with broken count: 0 79s Starting 2 pkgProblemResolver with broken count: 0 79s Done 79s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 82s autopkgtest [00:26:12]: testbed running kernel: Linux 6.11.0-8-generic #8-Ubuntu SMP Mon Sep 16 13:49:23 UTC 2024 82s autopkgtest [00:26:12]: @@@@@@@@@@@@@@@@@@@@ apt-source pymol 86s Get:1 http://ftpmaster.internal/ubuntu plucky/universe pymol 3.0.0+dfsg-1build1 (dsc) [2304 B] 86s Get:2 http://ftpmaster.internal/ubuntu plucky/universe pymol 3.0.0+dfsg-1build1 (tar) [22.0 MB] 86s Get:3 http://ftpmaster.internal/ubuntu plucky/universe pymol 3.0.0+dfsg-1build1 (diff) [57.7 kB] 86s gpgv: Signature made Thu Nov 14 18:31:58 2024 UTC 86s gpgv: using RSA key 568BF22A66337CBFC9A6B9B72C83DBC8E9BD0E37 86s gpgv: Can't check signature: No public key 86s dpkg-source: warning: cannot verify inline signature for ./pymol_3.0.0+dfsg-1build1.dsc: no acceptable signature found 88s autopkgtest [00:26:18]: testing package pymol version 3.0.0+dfsg-1build1 88s autopkgtest [00:26:18]: build not needed 93s autopkgtest [00:26:23]: test command1: preparing testbed 93s Reading package lists... 93s Building dependency tree... 93s Reading state information... 93s Starting pkgProblemResolver with broken count: 0 93s Starting 2 pkgProblemResolver with broken count: 0 93s Done 93s The following NEW packages will be installed: 93s fontconfig fontconfig-config fonts-dejavu-core fonts-dejavu-mono libaec0 93s libavahi-client3 libavahi-common-data libavahi-common3 libblas3 libcups2t64 93s libdouble-conversion3 libdrm-radeon1 libegl-mesa0 libegl1 libfontconfig1 93s libgbm1 libgfortran5 libgl1 libgl1-mesa-dri libglapi-mesa libglew2.2 93s libglu1-mesa libglvnd0 libglx-mesa0 libglx0 libgomp1 libgraphite2-3 93s libharfbuzz0b libhdf5-103-1t64 libhdf5-hl-100t64 libice6 libinput-bin 93s libinput10 libjpeg-turbo8 libjpeg8 liblapack3 libmd4c0 libmtdev1t64 93s libnetcdf19t64 libopengl0 libpcre2-16-0 libqt5core5t64 libqt5dbus5t64 93s libqt5designer5 libqt5gui5t64 libqt5help5 libqt5network5t64 libqt5opengl5t64 93s libqt5printsupport5t64 libqt5sql5t64 libqt5test5t64 libqt5widgets5t64 93s libqt5xml5t64 libsm6 libsz2 libvulkan1 libwacom-common libwacom9 93s libwayland-client0 libwayland-server0 libx11-xcb1 libxcb-dri2-0 93s libxcb-dri3-0 libxcb-glx0 libxcb-icccm4 libxcb-image0 libxcb-keysyms1 93s libxcb-present0 libxcb-randr0 libxcb-render-util0 libxcb-render0 93s libxcb-shape0 libxcb-shm0 libxcb-sync1 libxcb-util1 libxcb-xfixes0 93s libxcb-xinerama0 libxcb-xinput0 libxcb-xkb1 libxfixes3 libxkbcommon-x11-0 93s libxrender1 libxshmfence1 libxxf86vm1 mesa-libgallium pymol pymol-data 93s python3-numpy python3-opengl python3-pymol python3-pyqt5 93s python3-pyqt5.qtopengl python3-pyqt5.sip x11-common 94s 0 upgraded, 94 newly installed, 0 to remove and 0 not upgraded. 94s Need to get 52.6 MB of archives. 94s After this operation, 228 MB of additional disk space will be used. 94s Get:1 http://ftpmaster.internal/ubuntu plucky/main ppc64el fonts-dejavu-mono all 2.37-8 [502 kB] 94s Get:2 http://ftpmaster.internal/ubuntu plucky/main ppc64el fonts-dejavu-core all 2.37-8 [835 kB] 94s Get:3 http://ftpmaster.internal/ubuntu plucky/main ppc64el fontconfig-config ppc64el 2.15.0-1.1ubuntu2 [37.4 kB] 94s Get:4 http://ftpmaster.internal/ubuntu plucky/main ppc64el libfontconfig1 ppc64el 2.15.0-1.1ubuntu2 [190 kB] 94s Get:5 http://ftpmaster.internal/ubuntu plucky/main ppc64el fontconfig ppc64el 2.15.0-1.1ubuntu2 [192 kB] 94s Get:6 http://ftpmaster.internal/ubuntu plucky/universe ppc64el libaec0 ppc64el 1.1.3-1 [30.1 kB] 94s Get:7 http://ftpmaster.internal/ubuntu plucky/main ppc64el libavahi-common-data ppc64el 0.8-14ubuntu1 [30.5 kB] 94s Get:8 http://ftpmaster.internal/ubuntu plucky/main ppc64el libavahi-common3 ppc64el 0.8-14ubuntu1 [26.0 kB] 94s Get:9 http://ftpmaster.internal/ubuntu plucky/main ppc64el libavahi-client3 ppc64el 0.8-14ubuntu1 [31.0 kB] 94s Get:10 http://ftpmaster.internal/ubuntu plucky/main ppc64el libblas3 ppc64el 3.12.0-4 [222 kB] 94s Get:11 http://ftpmaster.internal/ubuntu plucky/main ppc64el libcups2t64 ppc64el 2.4.11-0ubuntu2 [347 kB] 94s Get:12 http://ftpmaster.internal/ubuntu plucky/universe ppc64el libdouble-conversion3 ppc64el 3.3.0-1build1 [45.7 kB] 94s Get:13 http://ftpmaster.internal/ubuntu plucky/main ppc64el libdrm-radeon1 ppc64el 2.4.123-1 [29.0 kB] 94s Get:14 http://ftpmaster.internal/ubuntu plucky/main ppc64el libwayland-server0 ppc64el 1.23.0-1 [41.3 kB] 94s Get:15 http://ftpmaster.internal/ubuntu plucky/main ppc64el libxcb-randr0 ppc64el 1.17.0-2 [19.1 kB] 94s Get:16 http://ftpmaster.internal/ubuntu plucky/main ppc64el libglapi-mesa ppc64el 24.2.8-1ubuntu1 [44.6 kB] 94s Get:17 http://ftpmaster.internal/ubuntu plucky/main ppc64el libx11-xcb1 ppc64el 2:1.8.10-2 [8008 B] 94s Get:18 http://ftpmaster.internal/ubuntu plucky/main ppc64el libxcb-dri2-0 ppc64el 1.17.0-2 [7508 B] 94s Get:19 http://ftpmaster.internal/ubuntu plucky/main ppc64el libxcb-dri3-0 ppc64el 1.17.0-2 [7842 B] 94s Get:20 http://ftpmaster.internal/ubuntu plucky/main ppc64el libxcb-present0 ppc64el 1.17.0-2 [6276 B] 94s Get:21 http://ftpmaster.internal/ubuntu plucky/main ppc64el libxcb-sync1 ppc64el 1.17.0-2 [9804 B] 94s Get:22 http://ftpmaster.internal/ubuntu plucky/main ppc64el libxcb-xfixes0 ppc64el 1.17.0-2 [10.7 kB] 94s Get:23 http://ftpmaster.internal/ubuntu plucky/main ppc64el libxshmfence1 ppc64el 1.3-1build5 [4964 B] 94s Get:24 http://ftpmaster.internal/ubuntu plucky/main ppc64el mesa-libgallium ppc64el 24.2.8-1ubuntu1 [9164 kB] 95s Get:25 http://ftpmaster.internal/ubuntu plucky/main ppc64el libgbm1 ppc64el 24.2.8-1ubuntu1 [38.2 kB] 95s Get:26 http://ftpmaster.internal/ubuntu plucky/main ppc64el libwayland-client0 ppc64el 1.23.0-1 [31.4 kB] 95s Get:27 http://ftpmaster.internal/ubuntu plucky/main ppc64el libxcb-shm0 ppc64el 1.17.0-2 [5980 B] 95s Get:28 http://ftpmaster.internal/ubuntu plucky/main ppc64el libegl-mesa0 ppc64el 24.2.8-1ubuntu1 [163 kB] 95s Get:29 http://ftpmaster.internal/ubuntu plucky/main ppc64el libgfortran5 ppc64el 14.2.0-12ubuntu1 [571 kB] 95s Get:30 http://ftpmaster.internal/ubuntu plucky/main ppc64el libvulkan1 ppc64el 1.3.296.0-1 [163 kB] 95s Get:31 http://ftpmaster.internal/ubuntu plucky/main ppc64el libgl1-mesa-dri ppc64el 24.2.8-1ubuntu1 [34.1 kB] 95s Get:32 http://ftpmaster.internal/ubuntu plucky/main ppc64el libglvnd0 ppc64el 1.7.0-1build1 [72.4 kB] 95s Get:33 http://ftpmaster.internal/ubuntu plucky/main ppc64el libxcb-glx0 ppc64el 1.17.0-2 [26.3 kB] 95s Get:34 http://ftpmaster.internal/ubuntu plucky/main ppc64el libxfixes3 ppc64el 1:6.0.0-2build1 [11.8 kB] 95s Get:35 http://ftpmaster.internal/ubuntu plucky/main ppc64el libxxf86vm1 ppc64el 1:1.1.4-1build4 [11.1 kB] 95s Get:36 http://ftpmaster.internal/ubuntu plucky/main ppc64el libglx-mesa0 ppc64el 24.2.8-1ubuntu1 [187 kB] 95s Get:37 http://ftpmaster.internal/ubuntu plucky/main ppc64el libglx0 ppc64el 1.7.0-1build1 [42.7 kB] 95s Get:38 http://ftpmaster.internal/ubuntu plucky/main ppc64el libgl1 ppc64el 1.7.0-1build1 [107 kB] 95s Get:39 http://ftpmaster.internal/ubuntu plucky/universe ppc64el libglew2.2 ppc64el 2.2.0-4build1 [186 kB] 95s Get:40 http://ftpmaster.internal/ubuntu plucky/main ppc64el libgomp1 ppc64el 14.2.0-12ubuntu1 [161 kB] 95s Get:41 http://ftpmaster.internal/ubuntu plucky/main ppc64el libgraphite2-3 ppc64el 1.3.14-2ubuntu1 [84.6 kB] 95s Get:42 http://ftpmaster.internal/ubuntu plucky/main ppc64el libharfbuzz0b ppc64el 10.1.0-1 [597 kB] 95s Get:43 http://ftpmaster.internal/ubuntu plucky/universe ppc64el libsz2 ppc64el 1.1.3-1 [5566 B] 95s Get:44 http://ftpmaster.internal/ubuntu plucky/universe ppc64el libhdf5-103-1t64 ppc64el 1.10.10+repack-5ubuntu1 [1394 kB] 95s Get:45 http://ftpmaster.internal/ubuntu plucky/universe ppc64el libhdf5-hl-100t64 ppc64el 1.10.10+repack-5ubuntu1 [71.2 kB] 95s Get:46 http://ftpmaster.internal/ubuntu plucky/main ppc64el x11-common all 1:7.7+23ubuntu3 [21.7 kB] 95s Get:47 http://ftpmaster.internal/ubuntu plucky/main ppc64el libice6 ppc64el 2:1.1.1-1 [49.9 kB] 95s Get:48 http://ftpmaster.internal/ubuntu plucky/main ppc64el libwacom-common all 2.13.0-1 [98.6 kB] 95s Get:49 http://ftpmaster.internal/ubuntu plucky/main ppc64el libwacom9 ppc64el 2.13.0-1 [31.2 kB] 95s Get:50 http://ftpmaster.internal/ubuntu plucky/main ppc64el libinput-bin ppc64el 1.26.2-1 [23.5 kB] 95s Get:51 http://ftpmaster.internal/ubuntu plucky/main ppc64el libmtdev1t64 ppc64el 1.1.6-1.2 [18.7 kB] 95s Get:52 http://ftpmaster.internal/ubuntu plucky/main ppc64el libinput10 ppc64el 1.26.2-1 [164 kB] 95s Get:53 http://ftpmaster.internal/ubuntu plucky/main ppc64el libjpeg-turbo8 ppc64el 2.1.5-3ubuntu2 [215 kB] 95s Get:54 http://ftpmaster.internal/ubuntu plucky/main ppc64el libjpeg8 ppc64el 8c-2ubuntu11 [2148 B] 95s Get:55 http://ftpmaster.internal/ubuntu plucky/main ppc64el liblapack3 ppc64el 3.12.0-4 [2814 kB] 95s Get:56 http://ftpmaster.internal/ubuntu plucky/universe ppc64el libmd4c0 ppc64el 0.5.2-2 [54.5 kB] 95s Get:57 http://ftpmaster.internal/ubuntu plucky/universe ppc64el libnetcdf19t64 ppc64el 1:4.9.2-6ubuntu1 [596 kB] 95s Get:58 http://ftpmaster.internal/ubuntu plucky/main ppc64el libpcre2-16-0 ppc64el 10.42-4ubuntu3 [254 kB] 95s Get:59 http://ftpmaster.internal/ubuntu plucky/universe ppc64el libqt5core5t64 ppc64el 5.15.15+dfsg-1ubuntu1 [2185 kB] 95s Get:60 http://ftpmaster.internal/ubuntu plucky/universe ppc64el libqt5dbus5t64 ppc64el 5.15.15+dfsg-1ubuntu1 [242 kB] 95s Get:61 http://ftpmaster.internal/ubuntu plucky/main ppc64el libegl1 ppc64el 1.7.0-1build1 [34.1 kB] 95s Get:62 http://ftpmaster.internal/ubuntu plucky/universe ppc64el libqt5network5t64 ppc64el 5.15.15+dfsg-1ubuntu1 [808 kB] 95s Get:63 http://ftpmaster.internal/ubuntu plucky/main ppc64el libsm6 ppc64el 2:1.2.4-1 [18.4 kB] 95s Get:64 http://ftpmaster.internal/ubuntu plucky/main ppc64el libxcb-icccm4 ppc64el 0.4.2-1 [11.4 kB] 95s Get:65 http://ftpmaster.internal/ubuntu plucky/main ppc64el libxcb-util1 ppc64el 0.4.0-1build3 [11.2 kB] 95s Get:66 http://ftpmaster.internal/ubuntu plucky/main ppc64el libxcb-image0 ppc64el 0.4.0-2build1 [12.4 kB] 95s Get:67 http://ftpmaster.internal/ubuntu plucky/main ppc64el libxcb-keysyms1 ppc64el 0.4.0-1build4 [8522 B] 95s Get:68 http://ftpmaster.internal/ubuntu plucky/main ppc64el libxcb-render0 ppc64el 1.17.0-2 [17.2 kB] 95s Get:69 http://ftpmaster.internal/ubuntu plucky/main ppc64el libxcb-render-util0 ppc64el 0.3.9-1build4 [10.8 kB] 96s Get:70 http://ftpmaster.internal/ubuntu plucky/main ppc64el libxcb-shape0 ppc64el 1.17.0-2 [6310 B] 96s Get:71 http://ftpmaster.internal/ubuntu plucky/main ppc64el libxcb-xinerama0 ppc64el 1.17.0-2 [5524 B] 96s Get:72 http://ftpmaster.internal/ubuntu plucky/main ppc64el libxcb-xinput0 ppc64el 1.17.0-2 [36.9 kB] 96s Get:73 http://ftpmaster.internal/ubuntu plucky/main ppc64el libxcb-xkb1 ppc64el 1.17.0-2 [37.6 kB] 96s Get:74 http://ftpmaster.internal/ubuntu plucky/main ppc64el libxkbcommon-x11-0 ppc64el 1.7.0-2 [15.3 kB] 96s Get:75 http://ftpmaster.internal/ubuntu plucky/main ppc64el libxrender1 ppc64el 1:0.9.10-1.1build1 [23.1 kB] 96s Get:76 http://ftpmaster.internal/ubuntu plucky/universe ppc64el libqt5gui5t64 ppc64el 5.15.15+dfsg-1ubuntu1 [4131 kB] 96s Get:77 http://ftpmaster.internal/ubuntu plucky/universe ppc64el libqt5widgets5t64 ppc64el 5.15.15+dfsg-1ubuntu1 [2792 kB] 96s Get:78 http://ftpmaster.internal/ubuntu plucky/universe ppc64el libqt5xml5t64 ppc64el 5.15.15+dfsg-1ubuntu1 [135 kB] 96s Get:79 http://ftpmaster.internal/ubuntu plucky/universe ppc64el libqt5designer5 ppc64el 5.15.15-4 [2914 kB] 96s Get:80 http://ftpmaster.internal/ubuntu plucky/universe ppc64el libqt5sql5t64 ppc64el 5.15.15+dfsg-1ubuntu1 [135 kB] 96s Get:81 http://ftpmaster.internal/ubuntu plucky/universe ppc64el libqt5help5 ppc64el 5.15.15-4 [179 kB] 96s Get:82 http://ftpmaster.internal/ubuntu plucky/universe ppc64el libqt5opengl5t64 ppc64el 5.15.15+dfsg-1ubuntu1 [164 kB] 96s Get:83 http://ftpmaster.internal/ubuntu plucky/universe ppc64el libqt5printsupport5t64 ppc64el 5.15.15+dfsg-1ubuntu1 [222 kB] 96s Get:84 http://ftpmaster.internal/ubuntu plucky/universe ppc64el libqt5test5t64 ppc64el 5.15.15+dfsg-1ubuntu1 [156 kB] 96s Get:85 http://ftpmaster.internal/ubuntu plucky/main ppc64el python3-numpy ppc64el 1:1.26.4+ds-12 [4917 kB] 96s Get:86 http://ftpmaster.internal/ubuntu plucky/main ppc64el libopengl0 ppc64el 1.7.0-1build1 [35.5 kB] 96s Get:87 http://ftpmaster.internal/ubuntu plucky/main ppc64el libglu1-mesa ppc64el 9.0.2-1.1build1 [276 kB] 96s Get:88 http://ftpmaster.internal/ubuntu plucky/universe ppc64el python3-opengl all 3.1.7+dfsg-1 [612 kB] 96s Get:89 http://ftpmaster.internal/ubuntu plucky/universe ppc64el python3-pyqt5.sip ppc64el 12.16.1-1 [85.3 kB] 96s Get:90 http://ftpmaster.internal/ubuntu plucky/universe ppc64el python3-pyqt5 ppc64el 5.15.11+dfsg-1build1 [2650 kB] 96s Get:91 http://ftpmaster.internal/ubuntu plucky/universe ppc64el python3-pyqt5.qtopengl ppc64el 5.15.11+dfsg-1build1 [118 kB] 96s Get:92 http://ftpmaster.internal/ubuntu plucky/universe ppc64el pymol-data all 3.0.0+dfsg-1build1 [1394 kB] 97s Get:93 http://ftpmaster.internal/ubuntu plucky/universe ppc64el python3-pymol ppc64el 3.0.0+dfsg-1build1 [7912 kB] 97s Get:94 http://ftpmaster.internal/ubuntu plucky/universe ppc64el pymol all 3.0.0+dfsg-1build1 [126 kB] 97s Fetched 52.6 MB in 3s (15.5 MB/s) 97s Selecting previously unselected package fonts-dejavu-mono. 97s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74025 files and directories currently installed.) 97s Preparing to unpack .../00-fonts-dejavu-mono_2.37-8_all.deb ... 97s Unpacking fonts-dejavu-mono (2.37-8) ... 97s Selecting previously unselected package fonts-dejavu-core. 97s Preparing to unpack .../01-fonts-dejavu-core_2.37-8_all.deb ... 97s Unpacking fonts-dejavu-core (2.37-8) ... 97s Selecting previously unselected package fontconfig-config. 97s Preparing to unpack .../02-fontconfig-config_2.15.0-1.1ubuntu2_ppc64el.deb ... 97s Unpacking fontconfig-config (2.15.0-1.1ubuntu2) ... 97s Selecting previously unselected package libfontconfig1:ppc64el. 98s Preparing to unpack .../03-libfontconfig1_2.15.0-1.1ubuntu2_ppc64el.deb ... 98s Unpacking libfontconfig1:ppc64el (2.15.0-1.1ubuntu2) ... 98s Selecting previously unselected package fontconfig. 98s Preparing to unpack .../04-fontconfig_2.15.0-1.1ubuntu2_ppc64el.deb ... 98s Unpacking fontconfig (2.15.0-1.1ubuntu2) ... 98s Selecting previously unselected package libaec0:ppc64el. 98s Preparing to unpack .../05-libaec0_1.1.3-1_ppc64el.deb ... 98s Unpacking libaec0:ppc64el (1.1.3-1) ... 98s Selecting previously unselected package libavahi-common-data:ppc64el. 98s Preparing to unpack .../06-libavahi-common-data_0.8-14ubuntu1_ppc64el.deb ... 98s Unpacking libavahi-common-data:ppc64el (0.8-14ubuntu1) ... 98s Selecting previously unselected package libavahi-common3:ppc64el. 98s Preparing to unpack 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unpack .../12-libdrm-radeon1_2.4.123-1_ppc64el.deb ... 98s Unpacking libdrm-radeon1:ppc64el (2.4.123-1) ... 98s Selecting previously unselected package libwayland-server0:ppc64el. 98s Preparing to unpack .../13-libwayland-server0_1.23.0-1_ppc64el.deb ... 98s Unpacking libwayland-server0:ppc64el (1.23.0-1) ... 98s Selecting previously unselected package libxcb-randr0:ppc64el. 98s Preparing to unpack .../14-libxcb-randr0_1.17.0-2_ppc64el.deb ... 98s Unpacking libxcb-randr0:ppc64el (1.17.0-2) ... 98s Selecting previously unselected package libglapi-mesa:ppc64el. 98s Preparing to unpack .../15-libglapi-mesa_24.2.8-1ubuntu1_ppc64el.deb ... 98s Unpacking libglapi-mesa:ppc64el (24.2.8-1ubuntu1) ... 98s Selecting previously unselected package libx11-xcb1:ppc64el. 98s Preparing to unpack .../16-libx11-xcb1_2%3a1.8.10-2_ppc64el.deb ... 98s Unpacking libx11-xcb1:ppc64el (2:1.8.10-2) ... 98s Selecting previously unselected package libxcb-dri2-0:ppc64el. 98s Preparing to unpack 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libegl-mesa0:ppc64el (24.2.8-1ubuntu1) ... 98s Selecting previously unselected package libgfortran5:ppc64el. 98s Preparing to unpack .../28-libgfortran5_14.2.0-12ubuntu1_ppc64el.deb ... 98s Unpacking libgfortran5:ppc64el (14.2.0-12ubuntu1) ... 98s Selecting previously unselected package libvulkan1:ppc64el. 98s Preparing to unpack .../29-libvulkan1_1.3.296.0-1_ppc64el.deb ... 98s Unpacking libvulkan1:ppc64el (1.3.296.0-1) ... 98s Selecting previously unselected package libgl1-mesa-dri:ppc64el. 98s Preparing to unpack .../30-libgl1-mesa-dri_24.2.8-1ubuntu1_ppc64el.deb ... 98s Unpacking libgl1-mesa-dri:ppc64el (24.2.8-1ubuntu1) ... 98s Selecting previously unselected package libglvnd0:ppc64el. 98s Preparing to unpack .../31-libglvnd0_1.7.0-1build1_ppc64el.deb ... 98s Unpacking libglvnd0:ppc64el (1.7.0-1build1) ... 98s Selecting previously unselected package libxcb-glx0:ppc64el. 98s Preparing to unpack .../32-libxcb-glx0_1.17.0-2_ppc64el.deb ... 98s Unpacking libxcb-glx0:ppc64el (1.17.0-2) ... 98s Selecting previously unselected package libxfixes3:ppc64el. 98s Preparing to unpack .../33-libxfixes3_1%3a6.0.0-2build1_ppc64el.deb ... 98s Unpacking libxfixes3:ppc64el (1:6.0.0-2build1) ... 98s Selecting previously unselected package libxxf86vm1:ppc64el. 98s Preparing to unpack .../34-libxxf86vm1_1%3a1.1.4-1build4_ppc64el.deb ... 98s Unpacking libxxf86vm1:ppc64el (1:1.1.4-1build4) ... 98s Selecting previously unselected package libglx-mesa0:ppc64el. 98s Preparing to unpack .../35-libglx-mesa0_24.2.8-1ubuntu1_ppc64el.deb ... 98s Unpacking libglx-mesa0:ppc64el (24.2.8-1ubuntu1) ... 98s Selecting previously unselected package libglx0:ppc64el. 98s Preparing to unpack .../36-libglx0_1.7.0-1build1_ppc64el.deb ... 98s Unpacking libglx0:ppc64el (1.7.0-1build1) ... 98s Selecting previously unselected package libgl1:ppc64el. 98s Preparing to unpack .../37-libgl1_1.7.0-1build1_ppc64el.deb ... 98s Unpacking libgl1:ppc64el (1.7.0-1build1) ... 98s Selecting previously unselected package libglew2.2:ppc64el. 98s Preparing to unpack .../38-libglew2.2_2.2.0-4build1_ppc64el.deb ... 98s Unpacking libglew2.2:ppc64el (2.2.0-4build1) ... 98s Selecting previously unselected package libgomp1:ppc64el. 98s Preparing to unpack .../39-libgomp1_14.2.0-12ubuntu1_ppc64el.deb ... 98s Unpacking libgomp1:ppc64el (14.2.0-12ubuntu1) ... 98s Selecting previously unselected package libgraphite2-3:ppc64el. 98s Preparing to unpack .../40-libgraphite2-3_1.3.14-2ubuntu1_ppc64el.deb ... 98s Unpacking libgraphite2-3:ppc64el (1.3.14-2ubuntu1) ... 98s Selecting previously unselected package libharfbuzz0b:ppc64el. 98s Preparing to unpack .../41-libharfbuzz0b_10.1.0-1_ppc64el.deb ... 98s Unpacking libharfbuzz0b:ppc64el (10.1.0-1) ... 98s Selecting previously unselected package libsz2:ppc64el. 98s Preparing to unpack .../42-libsz2_1.1.3-1_ppc64el.deb ... 98s Unpacking libsz2:ppc64el (1.1.3-1) ... 98s Selecting previously unselected package libhdf5-103-1t64:ppc64el. 98s Preparing to unpack .../43-libhdf5-103-1t64_1.10.10+repack-5ubuntu1_ppc64el.deb ... 98s Unpacking libhdf5-103-1t64:ppc64el (1.10.10+repack-5ubuntu1) ... 98s Selecting previously unselected package libhdf5-hl-100t64:ppc64el. 98s Preparing to unpack .../44-libhdf5-hl-100t64_1.10.10+repack-5ubuntu1_ppc64el.deb ... 98s Unpacking libhdf5-hl-100t64:ppc64el (1.10.10+repack-5ubuntu1) ... 98s Selecting previously unselected package x11-common. 98s Preparing to unpack .../45-x11-common_1%3a7.7+23ubuntu3_all.deb ... 98s Unpacking x11-common (1:7.7+23ubuntu3) ... 98s Selecting previously unselected package libice6:ppc64el. 98s Preparing to unpack .../46-libice6_2%3a1.1.1-1_ppc64el.deb ... 98s Unpacking libice6:ppc64el (2:1.1.1-1) ... 98s Selecting previously unselected package libwacom-common. 98s Preparing to unpack .../47-libwacom-common_2.13.0-1_all.deb ... 98s Unpacking libwacom-common (2.13.0-1) ... 99s Selecting previously unselected package libwacom9:ppc64el. 99s Preparing to unpack .../48-libwacom9_2.13.0-1_ppc64el.deb ... 99s Unpacking libwacom9:ppc64el (2.13.0-1) ... 99s Selecting previously unselected package libinput-bin. 99s Preparing to unpack .../49-libinput-bin_1.26.2-1_ppc64el.deb ... 99s Unpacking libinput-bin (1.26.2-1) ... 99s Selecting previously unselected package libmtdev1t64:ppc64el. 99s Preparing to unpack .../50-libmtdev1t64_1.1.6-1.2_ppc64el.deb ... 99s Unpacking libmtdev1t64:ppc64el (1.1.6-1.2) ... 99s Selecting previously unselected package libinput10:ppc64el. 99s Preparing to unpack .../51-libinput10_1.26.2-1_ppc64el.deb ... 99s Unpacking libinput10:ppc64el (1.26.2-1) ... 99s Selecting previously unselected package libjpeg-turbo8:ppc64el. 99s Preparing to unpack .../52-libjpeg-turbo8_2.1.5-3ubuntu2_ppc64el.deb ... 99s Unpacking libjpeg-turbo8:ppc64el (2.1.5-3ubuntu2) ... 99s Selecting previously unselected package libjpeg8:ppc64el. 99s Preparing to unpack .../53-libjpeg8_8c-2ubuntu11_ppc64el.deb ... 99s Unpacking libjpeg8:ppc64el (8c-2ubuntu11) ... 99s Selecting previously unselected package liblapack3:ppc64el. 99s Preparing to unpack .../54-liblapack3_3.12.0-4_ppc64el.deb ... 99s Unpacking liblapack3:ppc64el (3.12.0-4) ... 99s Selecting previously unselected package libmd4c0:ppc64el. 99s Preparing to unpack .../55-libmd4c0_0.5.2-2_ppc64el.deb ... 99s Unpacking libmd4c0:ppc64el (0.5.2-2) ... 99s Selecting previously unselected package libnetcdf19t64:ppc64el. 99s Preparing to unpack .../56-libnetcdf19t64_1%3a4.9.2-6ubuntu1_ppc64el.deb ... 99s Unpacking libnetcdf19t64:ppc64el (1:4.9.2-6ubuntu1) ... 99s Selecting previously unselected package libpcre2-16-0:ppc64el. 99s Preparing to unpack .../57-libpcre2-16-0_10.42-4ubuntu3_ppc64el.deb ... 99s Unpacking libpcre2-16-0:ppc64el (10.42-4ubuntu3) ... 99s Selecting previously unselected package libqt5core5t64:ppc64el. 99s Preparing to unpack .../58-libqt5core5t64_5.15.15+dfsg-1ubuntu1_ppc64el.deb ... 99s Unpacking libqt5core5t64:ppc64el (5.15.15+dfsg-1ubuntu1) ... 99s Selecting previously unselected package libqt5dbus5t64:ppc64el. 99s Preparing to unpack .../59-libqt5dbus5t64_5.15.15+dfsg-1ubuntu1_ppc64el.deb ... 99s Unpacking libqt5dbus5t64:ppc64el (5.15.15+dfsg-1ubuntu1) ... 99s Selecting previously unselected package libegl1:ppc64el. 99s Preparing to unpack .../60-libegl1_1.7.0-1build1_ppc64el.deb ... 99s Unpacking libegl1:ppc64el (1.7.0-1build1) ... 99s Selecting previously unselected package libqt5network5t64:ppc64el. 99s Preparing to unpack .../61-libqt5network5t64_5.15.15+dfsg-1ubuntu1_ppc64el.deb ... 99s Unpacking libqt5network5t64:ppc64el (5.15.15+dfsg-1ubuntu1) ... 99s Selecting previously unselected package libsm6:ppc64el. 99s Preparing to unpack .../62-libsm6_2%3a1.2.4-1_ppc64el.deb ... 99s Unpacking libsm6:ppc64el (2:1.2.4-1) ... 99s Selecting previously unselected package libxcb-icccm4:ppc64el. 99s Preparing to unpack .../63-libxcb-icccm4_0.4.2-1_ppc64el.deb ... 99s Unpacking libxcb-icccm4:ppc64el (0.4.2-1) ... 99s Selecting previously unselected package libxcb-util1:ppc64el. 99s Preparing to unpack .../64-libxcb-util1_0.4.0-1build3_ppc64el.deb ... 99s Unpacking libxcb-util1:ppc64el (0.4.0-1build3) ... 99s Selecting previously unselected package libxcb-image0:ppc64el. 99s Preparing to unpack .../65-libxcb-image0_0.4.0-2build1_ppc64el.deb ... 99s Unpacking libxcb-image0:ppc64el (0.4.0-2build1) ... 99s Selecting previously unselected package libxcb-keysyms1:ppc64el. 99s Preparing to unpack .../66-libxcb-keysyms1_0.4.0-1build4_ppc64el.deb ... 99s Unpacking libxcb-keysyms1:ppc64el (0.4.0-1build4) ... 99s Selecting previously unselected package libxcb-render0:ppc64el. 99s Preparing to unpack .../67-libxcb-render0_1.17.0-2_ppc64el.deb ... 99s Unpacking libxcb-render0:ppc64el (1.17.0-2) ... 99s Selecting previously unselected package libxcb-render-util0:ppc64el. 99s Preparing to unpack .../68-libxcb-render-util0_0.3.9-1build4_ppc64el.deb ... 99s Unpacking libxcb-render-util0:ppc64el (0.3.9-1build4) ... 99s Selecting previously unselected package libxcb-shape0:ppc64el. 99s Preparing to unpack .../69-libxcb-shape0_1.17.0-2_ppc64el.deb ... 99s Unpacking libxcb-shape0:ppc64el (1.17.0-2) ... 99s Selecting previously unselected package libxcb-xinerama0:ppc64el. 99s Preparing to unpack .../70-libxcb-xinerama0_1.17.0-2_ppc64el.deb ... 99s Unpacking libxcb-xinerama0:ppc64el (1.17.0-2) ... 99s Selecting previously unselected package libxcb-xinput0:ppc64el. 99s Preparing to unpack .../71-libxcb-xinput0_1.17.0-2_ppc64el.deb ... 99s Unpacking libxcb-xinput0:ppc64el (1.17.0-2) ... 99s Selecting previously unselected package libxcb-xkb1:ppc64el. 99s Preparing to unpack .../72-libxcb-xkb1_1.17.0-2_ppc64el.deb ... 99s Unpacking libxcb-xkb1:ppc64el (1.17.0-2) ... 99s Selecting previously unselected package libxkbcommon-x11-0:ppc64el. 99s Preparing to unpack .../73-libxkbcommon-x11-0_1.7.0-2_ppc64el.deb ... 99s Unpacking libxkbcommon-x11-0:ppc64el (1.7.0-2) ... 99s Selecting previously unselected package libxrender1:ppc64el. 99s Preparing to unpack .../74-libxrender1_1%3a0.9.10-1.1build1_ppc64el.deb ... 99s Unpacking libxrender1:ppc64el (1:0.9.10-1.1build1) ... 99s Selecting previously unselected package libqt5gui5t64:ppc64el. 99s Preparing to unpack .../75-libqt5gui5t64_5.15.15+dfsg-1ubuntu1_ppc64el.deb ... 99s Unpacking libqt5gui5t64:ppc64el (5.15.15+dfsg-1ubuntu1) ... 99s Selecting previously unselected package libqt5widgets5t64:ppc64el. 99s Preparing to unpack .../76-libqt5widgets5t64_5.15.15+dfsg-1ubuntu1_ppc64el.deb ... 99s Unpacking libqt5widgets5t64:ppc64el (5.15.15+dfsg-1ubuntu1) ... 99s Selecting previously unselected package libqt5xml5t64:ppc64el. 99s Preparing to unpack .../77-libqt5xml5t64_5.15.15+dfsg-1ubuntu1_ppc64el.deb ... 99s Unpacking libqt5xml5t64:ppc64el (5.15.15+dfsg-1ubuntu1) ... 99s Selecting previously unselected package libqt5designer5:ppc64el. 99s Preparing to unpack .../78-libqt5designer5_5.15.15-4_ppc64el.deb ... 99s Unpacking libqt5designer5:ppc64el (5.15.15-4) ... 99s Selecting previously unselected package libqt5sql5t64:ppc64el. 99s Preparing to unpack .../79-libqt5sql5t64_5.15.15+dfsg-1ubuntu1_ppc64el.deb ... 99s Unpacking libqt5sql5t64:ppc64el (5.15.15+dfsg-1ubuntu1) ... 99s Selecting previously unselected package libqt5help5:ppc64el. 99s Preparing to unpack .../80-libqt5help5_5.15.15-4_ppc64el.deb ... 99s Unpacking libqt5help5:ppc64el (5.15.15-4) ... 99s Selecting previously unselected package libqt5opengl5t64:ppc64el. 99s Preparing to unpack .../81-libqt5opengl5t64_5.15.15+dfsg-1ubuntu1_ppc64el.deb ... 99s Unpacking libqt5opengl5t64:ppc64el (5.15.15+dfsg-1ubuntu1) ... 99s Selecting previously unselected package libqt5printsupport5t64:ppc64el. 99s Preparing to unpack .../82-libqt5printsupport5t64_5.15.15+dfsg-1ubuntu1_ppc64el.deb ... 99s Unpacking libqt5printsupport5t64:ppc64el (5.15.15+dfsg-1ubuntu1) ... 99s Selecting previously unselected package libqt5test5t64:ppc64el. 99s Preparing to unpack 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(10.1.0-1) ... 101s Setting up libglu1-mesa:ppc64el (9.0.2-1.1build1) ... 101s Setting up libsz2:ppc64el (1.1.3-1) ... 101s Setting up libwacom-common (2.13.0-1) ... 101s Setting up libwayland-client0:ppc64el (1.23.0-1) ... 101s Setting up libjpeg8:ppc64el (8c-2ubuntu11) ... 101s Setting up libice6:ppc64el (2:1.1.1-1) ... 101s Setting up mesa-libgallium:ppc64el (24.2.8-1ubuntu1) ... 101s Setting up liblapack3:ppc64el (3.12.0-4) ... 101s update-alternatives: using /usr/lib/powerpc64le-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/powerpc64le-linux-gnu/liblapack.so.3 (liblapack.so.3-powerpc64le-linux-gnu) in auto mode 101s Setting up libqt5dbus5t64:ppc64el (5.15.15+dfsg-1ubuntu1) ... 101s Setting up libgbm1:ppc64el (24.2.8-1ubuntu1) ... 101s Setting up libwacom9:ppc64el (2.13.0-1) ... 101s Setting up fontconfig-config (2.15.0-1.1ubuntu2) ... 101s Setting up libgl1-mesa-dri:ppc64el (24.2.8-1ubuntu1) ... 101s Setting up libqt5network5t64:ppc64el (5.15.15+dfsg-1ubuntu1) ... 101s Setting up libavahi-common3:ppc64el (0.8-14ubuntu1) ... 101s Setting up libqt5xml5t64:ppc64el (5.15.15+dfsg-1ubuntu1) ... 101s Setting up libqt5test5t64:ppc64el (5.15.15+dfsg-1ubuntu1) ... 101s Setting up libinput-bin (1.26.2-1) ... 101s Setting up libegl-mesa0:ppc64el (24.2.8-1ubuntu1) ... 101s Setting up python3-numpy (1:1.26.4+ds-12) ... 103s Setting up libegl1:ppc64el (1.7.0-1build1) ... 103s Setting up libfontconfig1:ppc64el (2.15.0-1.1ubuntu2) ... 103s Setting up libhdf5-103-1t64:ppc64el (1.10.10+repack-5ubuntu1) ... 103s Setting up libsm6:ppc64el (2:1.2.4-1) ... 103s Setting up libavahi-client3:ppc64el (0.8-14ubuntu1) ... 103s Setting up libinput10:ppc64el (1.26.2-1) ... 103s Setting up libhdf5-hl-100t64:ppc64el (1.10.10+repack-5ubuntu1) ... 103s Setting up fontconfig (2.15.0-1.1ubuntu2) ... 105s Regenerating fonts cache... done. 105s Setting up libnetcdf19t64:ppc64el (1:4.9.2-6ubuntu1) ... 105s Setting up libglx-mesa0:ppc64el (24.2.8-1ubuntu1) ... 105s Setting up libglx0:ppc64el (1.7.0-1build1) ... 105s Setting up libgl1:ppc64el (1.7.0-1build1) ... 105s Setting up libglew2.2:ppc64el (2.2.0-4build1) ... 105s Setting up libcups2t64:ppc64el (2.4.11-0ubuntu2) ... 105s Setting up python3-opengl (3.1.7+dfsg-1) ... 105s /usr/lib/python3/dist-packages/OpenGL/GL/AMD/vertex_shader_tessellator.py:1: SyntaxWarning: invalid escape sequence '\ ' 105s '''OpenGL extension AMD.vertex_shader_tessellator 107s Setting up libqt5gui5t64:ppc64el (5.15.15+dfsg-1ubuntu1) ... 107s Setting up libqt5widgets5t64:ppc64el (5.15.15+dfsg-1ubuntu1) ... 107s Setting up libqt5help5:ppc64el (5.15.15-4) ... 107s Setting up libqt5opengl5t64:ppc64el (5.15.15+dfsg-1ubuntu1) ... 107s Setting up libqt5printsupport5t64:ppc64el (5.15.15+dfsg-1ubuntu1) ... 107s Setting up libqt5designer5:ppc64el (5.15.15-4) ... 107s Setting up python3-pyqt5 (5.15.11+dfsg-1build1) ... 107s Setting up python3-pyqt5.qtopengl (5.15.11+dfsg-1build1) ... 107s Setting up python3-pymol (3.0.0+dfsg-1build1) ... 108s Setting up pymol (3.0.0+dfsg-1build1) ... 108s Processing triggers for libc-bin (2.40-4ubuntu1) ... 108s Processing triggers for man-db (2.13.0-1) ... 109s Processing triggers for udev (257-2ubuntu1) ... 110s autopkgtest [00:26:40]: test command1: sh debian/tests/call-pymol-scripts examples/ \ "(start_pymol)|(xmlrpc01)|(sd_annotate)|(povray01)|(contact)|(dali)|(density)|(groel_es)|(packing)|(packsurf)|(ref_frame)|(ribosome)|(scenes2movie)|(ss_xfer)|(multiclip_ray)|(tkwindow)|(importing)" 110s autopkgtest [00:26:40]: test command1: [----------------------- 110s Search pymol scripts in /tmp/autopkgtest.JIpMTT/build.2W8/src/examples... 110s Processing new directory /tmp/autopkgtest.JIpMTT/build.2W8/src/examples 110s Run 'pymol -c /tmp/autopkgtest.JIpMTT/build.2W8/src/examples/chempy/generate_amber.py'... 110s Run 'pymol -c /tmp/autopkgtest.JIpMTT/build.2W8/src/examples/chempy/generate_mmff.py'... 110s Run 'pymol -c /tmp/autopkgtest.JIpMTT/build.2W8/src/examples/cookbook/area_diff.pml'... 111s Run 'pymol -c /tmp/autopkgtest.JIpMTT/build.2W8/src/examples/cookbook/build_peptide.py'... 111s Skip /tmp/autopkgtest.JIpMTT/build.2W8/src/examples/cookbook/contact.pml 111s Skip /tmp/autopkgtest.JIpMTT/build.2W8/src/examples/cookbook/dali.py 111s Skip /tmp/autopkgtest.JIpMTT/build.2W8/src/examples/cookbook/density.pml 111s Skip /tmp/autopkgtest.JIpMTT/build.2W8/src/examples/cookbook/groel_es.pml 111s Skip /tmp/autopkgtest.JIpMTT/build.2W8/src/examples/cookbook/multiclip_ray.pml 111s Skip /tmp/autopkgtest.JIpMTT/build.2W8/src/examples/cookbook/packing.pml 111s Skip /tmp/autopkgtest.JIpMTT/build.2W8/src/examples/cookbook/packsurf.pml 111s Skip /tmp/autopkgtest.JIpMTT/build.2W8/src/examples/cookbook/ref_frame.pml 111s Skip /tmp/autopkgtest.JIpMTT/build.2W8/src/examples/cookbook/ribosome.pml 111s Skip /tmp/autopkgtest.JIpMTT/build.2W8/src/examples/cookbook/scenes2movie.pml 111s Run 'pymol -c /tmp/autopkgtest.JIpMTT/build.2W8/src/examples/cookbook/seq_match_sele.pml'... 114s Skip /tmp/autopkgtest.JIpMTT/build.2W8/src/examples/cookbook/ss_xfer.pml 114s Run 'pymol -c /tmp/autopkgtest.JIpMTT/build.2W8/src/examples/cookbook/symsph.py'... 114s Run 'pymol -c /tmp/autopkgtest.JIpMTT/build.2W8/src/examples/devel/brick01.py'... 114s Run 'pymol -c /tmp/autopkgtest.JIpMTT/build.2W8/src/examples/devel/cgo01.py'... 114s Run 'pymol -c /tmp/autopkgtest.JIpMTT/build.2W8/src/examples/devel/cgo02.py'... 117s Run 'pymol -c /tmp/autopkgtest.JIpMTT/build.2W8/src/examples/devel/cgo03.py'... 121s Run 'pymol -c /tmp/autopkgtest.JIpMTT/build.2W8/src/examples/devel/cgo04.py'... 121s Run 'pymol -c /tmp/autopkgtest.JIpMTT/build.2W8/src/examples/devel/cgo05.py'... 121s Run 'pymol -c /tmp/autopkgtest.JIpMTT/build.2W8/src/examples/devel/cgo06.py'... 123s Run 'pymol -c /tmp/autopkgtest.JIpMTT/build.2W8/src/examples/devel/cgo07.py'... 123s Run 'pymol -c /tmp/autopkgtest.JIpMTT/build.2W8/src/examples/devel/cgo08.py'... 123s Run 'pymol -c /tmp/autopkgtest.JIpMTT/build.2W8/src/examples/devel/cgo_3Dtext01.py'... 124s Run 'pymol -c /tmp/autopkgtest.JIpMTT/build.2W8/src/examples/devel/cgo_axes.py'... 124s Run 'pymol -c /tmp/autopkgtest.JIpMTT/build.2W8/src/examples/devel/cgo_label_hack.py'... 128s Run 'pymol -c /tmp/autopkgtest.JIpMTT/build.2W8/src/examples/devel/cgo_plane.py'... 128s Run 'pymol -c /tmp/autopkgtest.JIpMTT/build.2W8/src/examples/devel/chempy_model01.py'... 128s Run 'pymol -c /tmp/autopkgtest.JIpMTT/build.2W8/src/examples/devel/chempy_model02.py'... 128s Run 'pymol -c /tmp/autopkgtest.JIpMTT/build.2W8/src/examples/devel/chempy_model03.py'... 131s Run 'pymol -c /tmp/autopkgtest.JIpMTT/build.2W8/src/examples/devel/click_ordered_list.py'... 131s Run 'pymol -c /tmp/autopkgtest.JIpMTT/build.2W8/src/examples/devel/count_molecules.py'... 131s Run 'pymol -c /tmp/autopkgtest.JIpMTT/build.2W8/src/examples/devel/extend_demo01.py'... 131s Run 'pymol -c /tmp/autopkgtest.JIpMTT/build.2W8/src/examples/devel/gl01.py'... 131s Run 'pymol -c /tmp/autopkgtest.JIpMTT/build.2W8/src/examples/devel/gl02.py'... 132s Run 'pymol -c /tmp/autopkgtest.JIpMTT/build.2W8/src/examples/devel/gl03.py'... 135s Skip /tmp/autopkgtest.JIpMTT/build.2W8/src/examples/devel/importing.py 135s Run 'pymol -c /tmp/autopkgtest.JIpMTT/build.2W8/src/examples/devel/link_demo.py'... 135s Run 'pymol -c /tmp/autopkgtest.JIpMTT/build.2W8/src/examples/devel/membrane.py'... 136s Run 'pymol -c /tmp/autopkgtest.JIpMTT/build.2W8/src/examples/devel/mutate01.pml'... 136s Run 'pymol -c /tmp/autopkgtest.JIpMTT/build.2W8/src/examples/devel/mutate02.py'... 138s Run 'pymol -c /tmp/autopkgtest.JIpMTT/build.2W8/src/examples/devel/my_ext_gui.py'... 138s Run 'pymol -c /tmp/autopkgtest.JIpMTT/build.2W8/src/examples/devel/particle01.py'... 138s Run 'pymol -c /tmp/autopkgtest.JIpMTT/build.2W8/src/examples/devel/particle02.py'... 139s Run 'pymol -c /tmp/autopkgtest.JIpMTT/build.2W8/src/examples/devel/pick_wiz.py'... 139s Skip /tmp/autopkgtest.JIpMTT/build.2W8/src/examples/devel/povray01.py 139s Run 'pymol -c /tmp/autopkgtest.JIpMTT/build.2W8/src/examples/devel/scenes_to_movie01.pml'... 139s Skip /tmp/autopkgtest.JIpMTT/build.2W8/src/examples/devel/sd_annotate.pml 139s Run 'pymol -c /tmp/autopkgtest.JIpMTT/build.2W8/src/examples/devel/sele_wiz.py'... 139s Skip /tmp/autopkgtest.JIpMTT/build.2W8/src/examples/devel/start_pymol.py 139s Run 'pymol -c /tmp/autopkgtest.JIpMTT/build.2W8/src/examples/devel/syncmol.py'... 139s Skip /tmp/autopkgtest.JIpMTT/build.2W8/src/examples/devel/tkwindow.py 139s Run 'pymol -c /tmp/autopkgtest.JIpMTT/build.2W8/src/examples/devel/webgui01.py'... 139s Run 'pymol -c /tmp/autopkgtest.JIpMTT/build.2W8/src/examples/devel/webgui02.py'... 140s /tmp/autopkgtest.JIpMTT/build.2W8/src/examples/devel/webgui02.py:161: SyntaxWarning: invalid escape sequence '\=' 140s mo = re.search("molid\=([A-Z0-9]+)",self.path) 140s Skip /tmp/autopkgtest.JIpMTT/build.2W8/src/examples/devel/xmlrpc01.py 140s Run 'pymol -c /tmp/autopkgtest.JIpMTT/build.2W8/src/examples/devel/xmlrpc02.py'... 140s Run 'pymol -c /tmp/autopkgtest.JIpMTT/build.2W8/src/examples/launching/launch_demo.py'... 140s Run 'pymol -c /tmp/autopkgtest.JIpMTT/build.2W8/src/examples/launching/launch_viewer1.py'... 140s Run 'pymol -c /tmp/autopkgtest.JIpMTT/build.2W8/src/examples/launching/launch_viewer2.py'... 140s Processing new directory /tmp/autopkgtest.JIpMTT/build.2W8/src/examples/chempy 140s Run 'pymol -c /tmp/autopkgtest.JIpMTT/build.2W8/src/examples/chempy/generate_amber.py'... 140s Run 'pymol -c /tmp/autopkgtest.JIpMTT/build.2W8/src/examples/chempy/generate_mmff.py'... 141s Processing new directory /tmp/autopkgtest.JIpMTT/build.2W8/src/examples/cookbook 141s Run 'pymol -c /tmp/autopkgtest.JIpMTT/build.2W8/src/examples/cookbook/area_diff.pml'... 141s Run 'pymol -c /tmp/autopkgtest.JIpMTT/build.2W8/src/examples/cookbook/build_peptide.py'... 141s Skip /tmp/autopkgtest.JIpMTT/build.2W8/src/examples/cookbook/contact.pml 141s Skip /tmp/autopkgtest.JIpMTT/build.2W8/src/examples/cookbook/dali.py 141s Skip /tmp/autopkgtest.JIpMTT/build.2W8/src/examples/cookbook/density.pml 141s Skip /tmp/autopkgtest.JIpMTT/build.2W8/src/examples/cookbook/groel_es.pml 141s Skip /tmp/autopkgtest.JIpMTT/build.2W8/src/examples/cookbook/multiclip_ray.pml 141s Skip /tmp/autopkgtest.JIpMTT/build.2W8/src/examples/cookbook/packing.pml 141s Skip /tmp/autopkgtest.JIpMTT/build.2W8/src/examples/cookbook/packsurf.pml 141s Skip /tmp/autopkgtest.JIpMTT/build.2W8/src/examples/cookbook/ref_frame.pml 141s Skip /tmp/autopkgtest.JIpMTT/build.2W8/src/examples/cookbook/ribosome.pml 141s Skip /tmp/autopkgtest.JIpMTT/build.2W8/src/examples/cookbook/scenes2movie.pml 142s Run 'pymol -c /tmp/autopkgtest.JIpMTT/build.2W8/src/examples/cookbook/seq_match_sele.pml'... 144s Skip /tmp/autopkgtest.JIpMTT/build.2W8/src/examples/cookbook/ss_xfer.pml 144s Run 'pymol -c /tmp/autopkgtest.JIpMTT/build.2W8/src/examples/cookbook/symsph.py'... 144s Processing new directory /tmp/autopkgtest.JIpMTT/build.2W8/src/examples/devel 144s Run 'pymol -c /tmp/autopkgtest.JIpMTT/build.2W8/src/examples/devel/brick01.py'... 144s Run 'pymol -c /tmp/autopkgtest.JIpMTT/build.2W8/src/examples/devel/cgo01.py'... 144s Run 'pymol -c /tmp/autopkgtest.JIpMTT/build.2W8/src/examples/devel/cgo02.py'... 148s Run 'pymol -c /tmp/autopkgtest.JIpMTT/build.2W8/src/examples/devel/cgo03.py'... 151s Run 'pymol -c /tmp/autopkgtest.JIpMTT/build.2W8/src/examples/devel/cgo04.py'... 151s Run 'pymol -c /tmp/autopkgtest.JIpMTT/build.2W8/src/examples/devel/cgo05.py'... 151s Run 'pymol -c /tmp/autopkgtest.JIpMTT/build.2W8/src/examples/devel/cgo06.py'... 153s Run 'pymol -c /tmp/autopkgtest.JIpMTT/build.2W8/src/examples/devel/cgo07.py'... 153s Run 'pymol -c /tmp/autopkgtest.JIpMTT/build.2W8/src/examples/devel/cgo08.py'... 154s Run 'pymol -c /tmp/autopkgtest.JIpMTT/build.2W8/src/examples/devel/cgo_3Dtext01.py'... 154s Run 'pymol -c /tmp/autopkgtest.JIpMTT/build.2W8/src/examples/devel/cgo_axes.py'... 154s Run 'pymol -c /tmp/autopkgtest.JIpMTT/build.2W8/src/examples/devel/cgo_label_hack.py'... 158s Run 'pymol -c /tmp/autopkgtest.JIpMTT/build.2W8/src/examples/devel/cgo_plane.py'... 158s Run 'pymol -c /tmp/autopkgtest.JIpMTT/build.2W8/src/examples/devel/chempy_model01.py'... 158s Run 'pymol -c /tmp/autopkgtest.JIpMTT/build.2W8/src/examples/devel/chempy_model02.py'... 158s Run 'pymol -c /tmp/autopkgtest.JIpMTT/build.2W8/src/examples/devel/chempy_model03.py'... 161s Run 'pymol -c /tmp/autopkgtest.JIpMTT/build.2W8/src/examples/devel/click_ordered_list.py'... 161s Run 'pymol -c /tmp/autopkgtest.JIpMTT/build.2W8/src/examples/devel/count_molecules.py'... 161s Run 'pymol -c /tmp/autopkgtest.JIpMTT/build.2W8/src/examples/devel/extend_demo01.py'... 161s Run 'pymol -c /tmp/autopkgtest.JIpMTT/build.2W8/src/examples/devel/gl01.py'... 162s Run 'pymol -c /tmp/autopkgtest.JIpMTT/build.2W8/src/examples/devel/gl02.py'... 162s Run 'pymol -c /tmp/autopkgtest.JIpMTT/build.2W8/src/examples/devel/gl03.py'... 165s Skip /tmp/autopkgtest.JIpMTT/build.2W8/src/examples/devel/importing.py 165s Run 'pymol -c /tmp/autopkgtest.JIpMTT/build.2W8/src/examples/devel/link_demo.py'... 165s Run 'pymol -c /tmp/autopkgtest.JIpMTT/build.2W8/src/examples/devel/membrane.py'... 166s Run 'pymol -c /tmp/autopkgtest.JIpMTT/build.2W8/src/examples/devel/mutate01.pml'... 166s Run 'pymol -c /tmp/autopkgtest.JIpMTT/build.2W8/src/examples/devel/mutate02.py'... 168s Run 'pymol -c /tmp/autopkgtest.JIpMTT/build.2W8/src/examples/devel/my_ext_gui.py'... 168s Run 'pymol -c /tmp/autopkgtest.JIpMTT/build.2W8/src/examples/devel/particle01.py'... 169s Run 'pymol -c /tmp/autopkgtest.JIpMTT/build.2W8/src/examples/devel/particle02.py'... 169s Run 'pymol -c /tmp/autopkgtest.JIpMTT/build.2W8/src/examples/devel/pick_wiz.py'... 169s Skip /tmp/autopkgtest.JIpMTT/build.2W8/src/examples/devel/povray01.py 169s Run 'pymol -c /tmp/autopkgtest.JIpMTT/build.2W8/src/examples/devel/scenes_to_movie01.pml'... 169s Skip /tmp/autopkgtest.JIpMTT/build.2W8/src/examples/devel/sd_annotate.pml 169s Run 'pymol -c /tmp/autopkgtest.JIpMTT/build.2W8/src/examples/devel/sele_wiz.py'... 169s Skip /tmp/autopkgtest.JIpMTT/build.2W8/src/examples/devel/start_pymol.py 169s Run 'pymol -c /tmp/autopkgtest.JIpMTT/build.2W8/src/examples/devel/syncmol.py'... 170s Skip /tmp/autopkgtest.JIpMTT/build.2W8/src/examples/devel/tkwindow.py 170s Run 'pymol -c /tmp/autopkgtest.JIpMTT/build.2W8/src/examples/devel/webgui01.py'... 170s Run 'pymol -c /tmp/autopkgtest.JIpMTT/build.2W8/src/examples/devel/webgui02.py'... 170s /tmp/autopkgtest.JIpMTT/build.2W8/src/examples/devel/webgui02.py:161: SyntaxWarning: invalid escape sequence '\=' 170s mo = re.search("molid\=([A-Z0-9]+)",self.path) 170s Skip /tmp/autopkgtest.JIpMTT/build.2W8/src/examples/devel/xmlrpc01.py 170s Run 'pymol -c /tmp/autopkgtest.JIpMTT/build.2W8/src/examples/devel/xmlrpc02.py'... 170s Processing new directory /tmp/autopkgtest.JIpMTT/build.2W8/src/examples/launching 170s Run 'pymol -c /tmp/autopkgtest.JIpMTT/build.2W8/src/examples/launching/launch_demo.py'... 170s Run 'pymol -c /tmp/autopkgtest.JIpMTT/build.2W8/src/examples/launching/launch_viewer1.py'... 170s Run 'pymol -c /tmp/autopkgtest.JIpMTT/build.2W8/src/examples/launching/launch_viewer2.py'... 171s autopkgtest [00:27:41]: test command1: -----------------------] 171s autopkgtest [00:27:41]: test command1: - - - - - - - - - - results - - - - - - - - - - 171s command1 PASS (superficial) 172s autopkgtest [00:27:42]: test command2: preparing testbed 172s Reading package lists... 172s Building dependency tree... 172s Reading state information... 172s Starting pkgProblemResolver with broken count: 0 173s Starting 2 pkgProblemResolver with broken count: 0 173s Done 173s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 173s autopkgtest [00:27:43]: test command2: sh debian/tests/call-pymol-scripts data/demo 173s autopkgtest [00:27:43]: test command2: [----------------------- 173s Search pymol scripts in /tmp/autopkgtest.JIpMTT/build.2W8/src/data/demo... 173s Processing new directory /tmp/autopkgtest.JIpMTT/build.2W8/src/data/demo 173s Run 'pymol -c /tmp/autopkgtest.JIpMTT/build.2W8/src/data/demo/cgo03.py'... 177s autopkgtest [00:27:47]: test command2: -----------------------] 178s command2 PASS (superficial) 178s autopkgtest [00:27:48]: test command2: - - - - - - - - - - results - - - - - - - - - - 178s autopkgtest [00:27:48]: test command3: preparing testbed 178s Reading package lists... 178s Building dependency tree... 178s Reading state information... 179s Starting pkgProblemResolver with broken count: 0 179s Starting 2 pkgProblemResolver with broken count: 0 179s Done 179s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 180s autopkgtest [00:27:50]: test command3: sh debian/tests/call-pymol-scripts /usr/share/pymol/examples \ "(cookbook/)|(xmlrpc01)|(sd_annotate)|(povray01)|(tkwindow)|(importing)" 180s autopkgtest [00:27:50]: test command3: [----------------------- 180s Search pymol scripts in /usr/share/pymol/examples... 180s Processing new directory /usr/share/pymol/examples 180s Run 'pymol -c /usr/share/pymol/examples/chempy/generate_amber.py'... 180s Run 'pymol -c /usr/share/pymol/examples/chempy/generate_mmff.py'... 180s Skip /usr/share/pymol/examples/cookbook/area_diff.pml 180s Skip /usr/share/pymol/examples/cookbook/contact.pml 180s Skip /usr/share/pymol/examples/cookbook/multiclip_ray.pml 180s Skip /usr/share/pymol/examples/cookbook/packing.pml 180s Skip /usr/share/pymol/examples/cookbook/packsurf.pml 180s Skip /usr/share/pymol/examples/cookbook/ref_frame.pml 180s Skip /usr/share/pymol/examples/cookbook/scenes2movie.pml 180s Skip /usr/share/pymol/examples/cookbook/seq_match_sele.pml 180s Skip /usr/share/pymol/examples/cookbook/ss_xfer.pml 180s Run 'pymol -c /usr/share/pymol/examples/devel/brick01.py'... 181s Run 'pymol -c /usr/share/pymol/examples/devel/cgo01.py'... 181s Run 'pymol -c /usr/share/pymol/examples/devel/cgo02.py'... 184s Run 'pymol -c /usr/share/pymol/examples/devel/cgo03.py'... 187s Run 'pymol -c /usr/share/pymol/examples/devel/cgo04.py'... 188s Run 'pymol -c /usr/share/pymol/examples/devel/cgo05.py'... 188s Run 'pymol -c /usr/share/pymol/examples/devel/cgo06.py'... 189s Run 'pymol -c /usr/share/pymol/examples/devel/cgo07.py'... 190s Run 'pymol -c /usr/share/pymol/examples/devel/cgo08.py'... 190s Run 'pymol -c /usr/share/pymol/examples/devel/cgo_3Dtext01.py'... 190s Run 'pymol -c /usr/share/pymol/examples/devel/cgo_axes.py'... 190s Run 'pymol -c /usr/share/pymol/examples/devel/cgo_label_hack.py'... 193s Run 'pymol -c /usr/share/pymol/examples/devel/cgo_plane.py'... 193s Run 'pymol -c /usr/share/pymol/examples/devel/chempy_model01.py'... 193s Run 'pymol -c /usr/share/pymol/examples/devel/chempy_model02.py'... 194s Run 'pymol -c /usr/share/pymol/examples/devel/chempy_model03.py'... 197s Run 'pymol -c /usr/share/pymol/examples/devel/click_ordered_list.py'... 197s Run 'pymol -c /usr/share/pymol/examples/devel/count_molecules.py'... 197s Run 'pymol -c /usr/share/pymol/examples/devel/extend_demo01.py'... 198s Run 'pymol -c /usr/share/pymol/examples/devel/gl01.py'... 198s Run 'pymol -c /usr/share/pymol/examples/devel/gl02.py'... 198s Run 'pymol -c /usr/share/pymol/examples/devel/gl03.py'... 202s Skip /usr/share/pymol/examples/devel/importing.py 202s Run 'pymol -c /usr/share/pymol/examples/devel/link_demo.py'... 202s Run 'pymol -c /usr/share/pymol/examples/devel/membrane.py'... 202s Run 'pymol -c /usr/share/pymol/examples/devel/mutate01.pml'... 203s Run 'pymol -c /usr/share/pymol/examples/devel/mutate02.py'... 204s Run 'pymol -c /usr/share/pymol/examples/devel/my_ext_gui.py'... 204s Run 'pymol -c /usr/share/pymol/examples/devel/particle01.py'... 205s Run 'pymol -c /usr/share/pymol/examples/devel/particle02.py'... 205s Run 'pymol -c /usr/share/pymol/examples/devel/pick_wiz.py'... 205s Run 'pymol -c /usr/share/pymol/examples/devel/scenes_to_movie01.pml'... 206s Skip /usr/share/pymol/examples/devel/sd_annotate.pml 206s Run 'pymol -c /usr/share/pymol/examples/devel/sele_wiz.py'... 206s Run 'pymol -c /usr/share/pymol/examples/devel/syncmol.py'... 206s Skip /usr/share/pymol/examples/devel/tkwindow.py 206s Run 'pymol -c /usr/share/pymol/examples/devel/webgui01.py'... 206s Run 'pymol -c /usr/share/pymol/examples/devel/webgui02.py'... 206s /usr/share/pymol/examples/devel/webgui02.py:161: SyntaxWarning: invalid escape sequence '\=' 206s mo = re.search("molid\=([A-Z0-9]+)",self.path) 206s Skip /usr/share/pymol/examples/devel/xmlrpc01.py 206s Run 'pymol -c /usr/share/pymol/examples/devel/xmlrpc02.py'... 206s Run 'pymol -c /usr/share/pymol/examples/launching/launch_demo.py'... 207s Run 'pymol -c /usr/share/pymol/examples/launching/launch_viewer1.py'... 207s Run 'pymol -c /usr/share/pymol/examples/launching/launch_viewer2.py'... 207s Processing new directory /usr/share/pymol/examples/chempy 207s Run 'pymol -c /usr/share/pymol/examples/chempy/generate_amber.py'... 207s Run 'pymol -c /usr/share/pymol/examples/chempy/generate_mmff.py'... 207s Processing new directory /usr/share/pymol/examples/cookbook 207s Skip /usr/share/pymol/examples/cookbook/area_diff.pml 207s Skip /usr/share/pymol/examples/cookbook/contact.pml 207s Skip /usr/share/pymol/examples/cookbook/multiclip_ray.pml 207s Skip /usr/share/pymol/examples/cookbook/packing.pml 207s Skip /usr/share/pymol/examples/cookbook/packsurf.pml 207s Skip /usr/share/pymol/examples/cookbook/ref_frame.pml 207s Skip /usr/share/pymol/examples/cookbook/scenes2movie.pml 207s Skip /usr/share/pymol/examples/cookbook/seq_match_sele.pml 207s Skip /usr/share/pymol/examples/cookbook/ss_xfer.pml 207s Processing new directory /usr/share/pymol/examples/devel 207s Run 'pymol -c /usr/share/pymol/examples/devel/brick01.py'... 207s Run 'pymol -c /usr/share/pymol/examples/devel/cgo01.py'... 208s Run 'pymol -c /usr/share/pymol/examples/devel/cgo02.py'... 211s Run 'pymol -c /usr/share/pymol/examples/devel/cgo03.py'... 214s Run 'pymol -c /usr/share/pymol/examples/devel/cgo04.py'... 214s Run 'pymol -c /usr/share/pymol/examples/devel/cgo05.py'... 214s Run 'pymol -c /usr/share/pymol/examples/devel/cgo06.py'... 217s Run 'pymol -c /usr/share/pymol/examples/devel/cgo07.py'... 217s Run 'pymol -c /usr/share/pymol/examples/devel/cgo08.py'... 217s Run 'pymol -c /usr/share/pymol/examples/devel/cgo_3Dtext01.py'... 217s Run 'pymol -c /usr/share/pymol/examples/devel/cgo_axes.py'... 217s Run 'pymol -c /usr/share/pymol/examples/devel/cgo_label_hack.py'... 220s Run 'pymol -c /usr/share/pymol/examples/devel/cgo_plane.py'... 221s Run 'pymol -c /usr/share/pymol/examples/devel/chempy_model01.py'... 221s Run 'pymol -c /usr/share/pymol/examples/devel/chempy_model02.py'... 221s Run 'pymol -c /usr/share/pymol/examples/devel/chempy_model03.py'... 225s Run 'pymol -c /usr/share/pymol/examples/devel/click_ordered_list.py'... 225s Run 'pymol -c /usr/share/pymol/examples/devel/count_molecules.py'... 225s Run 'pymol -c /usr/share/pymol/examples/devel/extend_demo01.py'... 225s Run 'pymol -c /usr/share/pymol/examples/devel/gl01.py'... 225s Run 'pymol -c /usr/share/pymol/examples/devel/gl02.py'... 225s Run 'pymol -c /usr/share/pymol/examples/devel/gl03.py'... 229s Skip /usr/share/pymol/examples/devel/importing.py 229s Run 'pymol -c /usr/share/pymol/examples/devel/link_demo.py'... 229s Run 'pymol -c /usr/share/pymol/examples/devel/membrane.py'... 229s Run 'pymol -c /usr/share/pymol/examples/devel/mutate01.pml'... 230s Run 'pymol -c /usr/share/pymol/examples/devel/mutate02.py'... 231s Run 'pymol -c /usr/share/pymol/examples/devel/my_ext_gui.py'... 232s Run 'pymol -c /usr/share/pymol/examples/devel/particle01.py'... 232s Run 'pymol -c /usr/share/pymol/examples/devel/particle02.py'... 232s Run 'pymol -c /usr/share/pymol/examples/devel/pick_wiz.py'... 233s Run 'pymol -c /usr/share/pymol/examples/devel/scenes_to_movie01.pml'... 233s Skip /usr/share/pymol/examples/devel/sd_annotate.pml 233s Run 'pymol -c /usr/share/pymol/examples/devel/sele_wiz.py'... 233s Run 'pymol -c /usr/share/pymol/examples/devel/syncmol.py'... 233s Skip /usr/share/pymol/examples/devel/tkwindow.py 233s Run 'pymol -c /usr/share/pymol/examples/devel/webgui01.py'... 233s Run 'pymol -c /usr/share/pymol/examples/devel/webgui02.py'... 233s /usr/share/pymol/examples/devel/webgui02.py:161: SyntaxWarning: invalid escape sequence '\=' 233s mo = re.search("molid\=([A-Z0-9]+)",self.path) 233s Skip /usr/share/pymol/examples/devel/xmlrpc01.py 233s Run 'pymol -c /usr/share/pymol/examples/devel/xmlrpc02.py'... 234s Processing new directory /usr/share/pymol/examples/launching 234s Run 'pymol -c /usr/share/pymol/examples/launching/launch_demo.py'... 234s Run 'pymol -c /usr/share/pymol/examples/launching/launch_viewer1.py'... 234s Run 'pymol -c /usr/share/pymol/examples/launching/launch_viewer2.py'... 234s autopkgtest [00:28:44]: test command3: -----------------------] 235s command3 PASS (superficial) 235s autopkgtest [00:28:45]: test command3: - - - - - - - - - - results - - - - - - - - - - 235s autopkgtest [00:28:45]: test command4: preparing testbed 235s Reading package lists... 236s Building dependency tree... 236s Reading state information... 236s Starting pkgProblemResolver with broken count: 0 236s Starting 2 pkgProblemResolver with broken count: 0 236s Done 236s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 237s autopkgtest [00:28:47]: test command4: sh debian/tests/call-pymol-scripts /usr/share/pymol/examples/cookbook multiclip_ray 237s autopkgtest [00:28:47]: test command4: [----------------------- 237s Search pymol scripts in /usr/share/pymol/examples/cookbook... 237s Processing new directory /usr/share/pymol/examples/cookbook 237s Run 'pymol -c /usr/share/pymol/examples/cookbook/area_diff.pml'... 238s Run 'pymol -c /usr/share/pymol/examples/cookbook/contact.pml'... 239s Skip /usr/share/pymol/examples/cookbook/multiclip_ray.pml 239s Run 'pymol -c /usr/share/pymol/examples/cookbook/packing.pml'... 241s Run 'pymol -c /usr/share/pymol/examples/cookbook/packsurf.pml'... 273s Run 'pymol -c /usr/share/pymol/examples/cookbook/ref_frame.pml'... 276s Run 'pymol -c /usr/share/pymol/examples/cookbook/scenes2movie.pml'... 276s Run 'pymol -c /usr/share/pymol/examples/cookbook/seq_match_sele.pml'... 278s Run 'pymol -c /usr/share/pymol/examples/cookbook/ss_xfer.pml'... 280s autopkgtest [00:29:30]: test command4: -----------------------] 281s autopkgtest [00:29:31]: test command4: - - - - - - - - - - results - - - - - - - - - - 281s command4 PASS (superficial) 281s autopkgtest [00:29:31]: test command5: preparing testbed 281s Reading package lists... 281s Building dependency tree... 281s Reading state information... 281s Starting pkgProblemResolver with broken count: 0 282s Starting 2 pkgProblemResolver with broken count: 0 282s Done 282s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 282s autopkgtest [00:29:32]: test command5: (cd /usr/share/pymol/examples/devel/ && pymol -c sd_annotate.pml) 282s autopkgtest [00:29:32]: test command5: [----------------------- 283s PyMOL(TM) Molecular Graphics System, Version 3.0.0. 283s Copyright (c) Schrodinger, LLC. 283s All Rights Reserved. 283s 283s Created by Warren L. DeLano, Ph.D. 283s 283s PyMOL is user-supported open-source software. Although some versions 283s are freely available, PyMOL is not in the public domain. 283s 283s If PyMOL is helpful in your work or study, then please volunteer 283s support for our ongoing efforts to create open and affordable scientific 283s software by purchasing a PyMOL Maintenance and/or Support subscription. 283s 283s More information can be found at "http://www.pymol.org". 283s 283s Enter "help" for a list of commands. 283s Enter "help " for information on a specific command. 283s 283s Hit ESC anytime to toggle between text and graphics. 283s 283s Setting: wizard_prompt_mode set to 3. 283s Detected 2 CPU cores. Enabled multithreaded rendering. 283s PyMOL>from pymol.wizard.annotation import load_annotated_sdf 283s PyMOL>cmd.extend('load_annotated_sdf',load_annotated_sdf) 283s PyMOL>wizard annotation 283s PyMOL>set wizard_prompt_mode,3 283s PyMOL>load_annotated_sdf demo.sdf 283s HBA ['[1, 25, 26, 34]\n'] 283s HBD ['[20]\n'] 283s ACD_NUMBER ['MFCD02681585\n'] 283s SCORE ['-222.044\n'] 283s MOLID ['MFCD02681585\n'] 283s HBA ['[1, 21]\n'] 283s HBD ['[]\n'] 283s ACD_NUMBER ['MFCD01567969\n'] 283s SCORE ['-219.984\n'] 283s MOLID ['MFCD01567969\n'] 283s HBA ['[1, 24]\n'] 283s HBD ['[10, 22]\n'] 283s ACD_NUMBER ['MFCD00023789\n'] 283s SCORE ['-219.911\n'] 283s MOLID ['MFCD00023789\n'] 283s HBA ['[1, 11]\n'] 283s HBD ['[3]\n'] 283s ACD_NUMBER ['MFCD02579443\n'] 283s SCORE ['-219.769\n'] 283s MOLID ['MFCD02579443\n'] 283s HBA ['[1, 11]\n'] 283s HBD ['[9]\n'] 283s ACD_NUMBER ['MFCD02579410\n'] 283s SCORE ['-214.809\n'] 283s MOLID ['MFCD02579410\n'] 283s HBA ['[1, 20, 22, 27, 32]\n'] 283s HBD ['[10, 20]\n'] 283s ACD_NUMBER ['MFCD02579135\n'] 283s SCORE ['-213.630\n'] 283s MOLID ['MFCD02579135\n'] 283s HBA ['[1, 11, 14, 21]\n'] 283s HBD ['[]\n'] 283s ACD_NUMBER ['MFCD02681468\n'] 283s SCORE ['-213.462\n'] 283s MOLID ['MFCD02681468\n'] 283s HBA ['[1, 13, 14, 29]\n'] 283s HBD ['[]\n'] 283s ACD_NUMBER ['MFCD00141070\n'] 283s SCORE ['-213.240\n'] 283s MOLID ['MFCD00141070\n'] 283s HBA ['[1, 8]\n'] 283s HBD ['[]\n'] 283s ACD_NUMBER ['MFCD02983625\n'] 283s SCORE ['-211.422\n'] 283s MOLID ['MFCD02983625\n'] 283s HBA ['[1, 11]\n'] 283s HBD ['[3, 12]\n'] 283s ACD_NUMBER ['MFCD00115818\n'] 283s SCORE ['-210.482\n'] 283s MOLID ['MFCD00115818\n'] 283s autopkgtest [00:29:33]: test command5: -----------------------] 284s command5 PASS (superficial) 284s autopkgtest [00:29:34]: test command5: - - - - - - - - - - results - - - - - - - - - - 284s autopkgtest [00:29:34]: @@@@@@@@@@@@@@@@@@@@ summary 284s command1 PASS (superficial) 284s command2 PASS (superficial) 284s command3 PASS (superficial) 284s command4 PASS (superficial) 284s command5 PASS (superficial) 301s nova [W] Using flock in prodstack6-ppc64el 301s Creating nova instance adt-plucky-ppc64el-pymol-20250110-002449-juju-7f2275-prod-proposed-migration-environment-15-22149f37-d06f-4a78-8017-3197571f8567 from image adt/ubuntu-plucky-ppc64el-server-20250109.img (UUID 64b5f774-d527-428e-8e51-6eba74faf5f9)... 301s nova [W] Timed out waiting for 72b7fecb-8c07-481b-9c2a-a28de3c59ee3 to get deleted.