0s autopkgtest [23:30:43]: starting date and time: 2025-01-03 23:30:43+0000 0s autopkgtest [23:30:43]: git checkout: 325255d2 Merge branch 'pin-any-arch' into 'ubuntu/production' 0s autopkgtest [23:30:43]: host juju-7f2275-prod-proposed-migration-environment-15; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.gto_9e54/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:python3-defaults --apt-upgrade pymol --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 '--env=ADT_TEST_TRIGGERS=python3-defaults/3.13.1-1~exp2' -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest-ppc64el --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-15@bos03-ppc64el-11.secgroup --name adt-plucky-ppc64el-pymol-20250103-233043-juju-7f2275-prod-proposed-migration-environment-15-0fdcc454-8df6-4686-8ad3-f786d6ddc7f1 --image adt/ubuntu-plucky-ppc64el-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-15 --net-id=net_prod-proposed-migration-ppc64el -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,keyserver.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com,radosgw.ps5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/ 120s autopkgtest [23:32:43]: testbed dpkg architecture: ppc64el 120s autopkgtest [23:32:43]: testbed apt version: 2.9.18 120s autopkgtest [23:32:43]: @@@@@@@@@@@@@@@@@@@@ test bed setup 120s autopkgtest [23:32:43]: testbed release detected to be: None 121s autopkgtest [23:32:44]: updating testbed package index (apt update) 122s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease [73.9 kB] 122s Hit:2 http://ftpmaster.internal/ubuntu plucky InRelease 122s Hit:3 http://ftpmaster.internal/ubuntu plucky-updates InRelease 122s Hit:4 http://ftpmaster.internal/ubuntu plucky-security InRelease 122s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse Sources [12.3 kB] 122s Get:6 http://ftpmaster.internal/ubuntu plucky-proposed/main Sources [78.5 kB] 122s Get:7 http://ftpmaster.internal/ubuntu plucky-proposed/universe Sources [804 kB] 122s Get:8 http://ftpmaster.internal/ubuntu plucky-proposed/restricted Sources [9708 B] 122s Get:9 http://ftpmaster.internal/ubuntu plucky-proposed/main ppc64el Packages [87.2 kB] 122s Get:10 http://ftpmaster.internal/ubuntu plucky-proposed/restricted ppc64el Packages [756 B] 122s Get:11 http://ftpmaster.internal/ubuntu plucky-proposed/universe ppc64el Packages [693 kB] 122s Get:12 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse ppc64el Packages [4084 B] 122s Fetched 1763 kB in 1s (1765 kB/s) 123s Reading package lists... 124s Reading package lists... 124s Building dependency tree... 124s Reading state information... 124s Calculating upgrade... 124s The following packages will be upgraded: 124s binutils binutils-common binutils-powerpc64le-linux-gnu libbinutils 124s libctf-nobfd0 libctf0 libsframe1 125s 7 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 125s Need to get 3752 kB of archives. 125s After this operation, 0 B of additional disk space will be used. 125s Get:1 http://ftpmaster.internal/ubuntu plucky/main ppc64el libctf0 ppc64el 2.43.50.20241230-1ubuntu1 [114 kB] 125s Get:2 http://ftpmaster.internal/ubuntu plucky/main ppc64el libctf-nobfd0 ppc64el 2.43.50.20241230-1ubuntu1 [117 kB] 125s Get:3 http://ftpmaster.internal/ubuntu plucky/main ppc64el binutils-powerpc64le-linux-gnu ppc64el 2.43.50.20241230-1ubuntu1 [2569 kB] 125s Get:4 http://ftpmaster.internal/ubuntu plucky/main ppc64el libbinutils ppc64el 2.43.50.20241230-1ubuntu1 [711 kB] 125s Get:5 http://ftpmaster.internal/ubuntu plucky/main ppc64el binutils ppc64el 2.43.50.20241230-1ubuntu1 [3096 B] 125s Get:6 http://ftpmaster.internal/ubuntu plucky/main ppc64el binutils-common ppc64el 2.43.50.20241230-1ubuntu1 [222 kB] 125s Get:7 http://ftpmaster.internal/ubuntu plucky/main ppc64el libsframe1 ppc64el 2.43.50.20241230-1ubuntu1 [15.9 kB] 126s Fetched 3752 kB in 1s (4642 kB/s) 126s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74025 files and directories currently installed.) 126s Preparing to unpack .../0-libctf0_2.43.50.20241230-1ubuntu1_ppc64el.deb ... 126s Unpacking libctf0:ppc64el (2.43.50.20241230-1ubuntu1) over (2.43.50.20241221-1ubuntu1) ... 126s Preparing to unpack .../1-libctf-nobfd0_2.43.50.20241230-1ubuntu1_ppc64el.deb ... 126s Unpacking libctf-nobfd0:ppc64el (2.43.50.20241230-1ubuntu1) over (2.43.50.20241221-1ubuntu1) ... 126s Preparing to unpack .../2-binutils-powerpc64le-linux-gnu_2.43.50.20241230-1ubuntu1_ppc64el.deb ... 126s Unpacking binutils-powerpc64le-linux-gnu (2.43.50.20241230-1ubuntu1) over (2.43.50.20241221-1ubuntu1) ... 126s Preparing to unpack .../3-libbinutils_2.43.50.20241230-1ubuntu1_ppc64el.deb ... 126s Unpacking libbinutils:ppc64el (2.43.50.20241230-1ubuntu1) over (2.43.50.20241221-1ubuntu1) ... 126s Preparing to unpack .../4-binutils_2.43.50.20241230-1ubuntu1_ppc64el.deb ... 126s Unpacking binutils (2.43.50.20241230-1ubuntu1) over (2.43.50.20241221-1ubuntu1) ... 126s Preparing to unpack .../5-binutils-common_2.43.50.20241230-1ubuntu1_ppc64el.deb ... 126s Unpacking binutils-common:ppc64el (2.43.50.20241230-1ubuntu1) over (2.43.50.20241221-1ubuntu1) ... 126s Preparing to unpack .../6-libsframe1_2.43.50.20241230-1ubuntu1_ppc64el.deb ... 126s Unpacking libsframe1:ppc64el (2.43.50.20241230-1ubuntu1) over (2.43.50.20241221-1ubuntu1) ... 126s Setting up binutils-common:ppc64el (2.43.50.20241230-1ubuntu1) ... 126s Setting up libctf-nobfd0:ppc64el (2.43.50.20241230-1ubuntu1) ... 126s Setting up libsframe1:ppc64el (2.43.50.20241230-1ubuntu1) ... 126s Setting up libbinutils:ppc64el (2.43.50.20241230-1ubuntu1) ... 126s Setting up libctf0:ppc64el (2.43.50.20241230-1ubuntu1) ... 126s Setting up binutils-powerpc64le-linux-gnu (2.43.50.20241230-1ubuntu1) ... 126s Setting up binutils (2.43.50.20241230-1ubuntu1) ... 126s Processing triggers for libc-bin (2.40-4ubuntu1) ... 126s Processing triggers for man-db (2.13.0-1) ... 127s Reading package lists... 127s Building dependency tree... 127s Reading state information... 127s 0 upgraded, 0 newly installed, 0 to remove and 3 not upgraded. 127s autopkgtest [23:32:50]: upgrading testbed (apt dist-upgrade and autopurge) 128s Reading package lists... 128s Building dependency tree... 128s Reading state information... 128s Calculating upgrade...Starting pkgProblemResolver with broken count: 0 128s Starting 2 pkgProblemResolver with broken count: 0 128s Done 128s Entering ResolveByKeep 129s 129s The following packages were automatically installed and are no longer required: 129s python3.12 python3.12-minimal 129s Use 'sudo apt autoremove' to remove them. 129s The following NEW packages will be installed: 129s libpython3.13-minimal libpython3.13-stdlib python3.13 python3.13-minimal 129s The following packages will be upgraded: 129s libpython3-stdlib python3 python3-minimal 129s 3 upgraded, 4 newly installed, 0 to remove and 0 not upgraded. 129s Need to get 6300 kB of archives. 129s After this operation, 26.2 MB of additional disk space will be used. 129s Get:1 http://ftpmaster.internal/ubuntu plucky/main ppc64el libpython3.13-minimal ppc64el 3.13.1-2 [883 kB] 129s Get:2 http://ftpmaster.internal/ubuntu plucky/main ppc64el python3.13-minimal ppc64el 3.13.1-2 [2496 kB] 130s Get:3 http://ftpmaster.internal/ubuntu plucky-proposed/main ppc64el python3-minimal ppc64el 3.13.1-1~exp2 [27.6 kB] 130s Get:4 http://ftpmaster.internal/ubuntu plucky-proposed/main ppc64el python3 ppc64el 3.13.1-1~exp2 [24.0 kB] 130s Get:5 http://ftpmaster.internal/ubuntu plucky/main ppc64el libpython3.13-stdlib ppc64el 3.13.1-2 [2131 kB] 130s Get:6 http://ftpmaster.internal/ubuntu plucky/main ppc64el python3.13 ppc64el 3.13.1-2 [729 kB] 130s Get:7 http://ftpmaster.internal/ubuntu plucky-proposed/main ppc64el libpython3-stdlib ppc64el 3.13.1-1~exp2 [10.2 kB] 130s Fetched 6300 kB in 1s (5866 kB/s) 130s Selecting previously unselected package libpython3.13-minimal:ppc64el. 130s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74025 files and directories currently installed.) 130s Preparing to unpack .../libpython3.13-minimal_3.13.1-2_ppc64el.deb ... 130s Unpacking libpython3.13-minimal:ppc64el (3.13.1-2) ... 130s Selecting previously unselected package python3.13-minimal. 130s Preparing to unpack .../python3.13-minimal_3.13.1-2_ppc64el.deb ... 130s Unpacking python3.13-minimal (3.13.1-2) ... 130s Setting up libpython3.13-minimal:ppc64el (3.13.1-2) ... 130s Setting up python3.13-minimal (3.13.1-2) ... 131s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74345 files and directories currently installed.) 131s Preparing to unpack .../python3-minimal_3.13.1-1~exp2_ppc64el.deb ... 131s Unpacking python3-minimal (3.13.1-1~exp2) over (3.12.8-1) ... 131s Setting up python3-minimal (3.13.1-1~exp2) ... 131s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74345 files and directories currently installed.) 131s Preparing to unpack .../python3_3.13.1-1~exp2_ppc64el.deb ... 131s Unpacking python3 (3.13.1-1~exp2) over (3.12.8-1) ... 131s Selecting previously unselected package libpython3.13-stdlib:ppc64el. 131s Preparing to unpack .../libpython3.13-stdlib_3.13.1-2_ppc64el.deb ... 131s Unpacking libpython3.13-stdlib:ppc64el (3.13.1-2) ... 131s Selecting previously unselected package python3.13. 132s Preparing to unpack .../python3.13_3.13.1-2_ppc64el.deb ... 132s Unpacking python3.13 (3.13.1-2) ... 132s Preparing to unpack .../libpython3-stdlib_3.13.1-1~exp2_ppc64el.deb ... 132s Unpacking libpython3-stdlib:ppc64el (3.13.1-1~exp2) over (3.12.8-1) ... 132s Setting up libpython3.13-stdlib:ppc64el (3.13.1-2) ... 132s Setting up libpython3-stdlib:ppc64el (3.13.1-1~exp2) ... 132s Setting up python3.13 (3.13.1-2) ... 133s Setting up python3 (3.13.1-1~exp2) ... 133s /usr/bin/py3clean:101: DeprecationWarning: glob.glob1 is deprecated and will be removed in Python 3.15. Use glob.glob and pass a directory to its root_dir argument instead. 133s for fn in glob1(directory, "%s.*" % fname): 133s Processing triggers for man-db (2.13.0-1) ... 133s Processing triggers for systemd (257-2ubuntu1) ... 133s Reading package lists... 134s Building dependency tree... 134s Reading state information... 134s Starting pkgProblemResolver with broken count: 0 134s Starting 2 pkgProblemResolver with broken count: 0 134s Done 134s The following packages will be REMOVED: 134s python3.12* python3.12-minimal* 134s 0 upgraded, 0 newly installed, 2 to remove and 0 not upgraded. 134s After this operation, 9889 kB disk space will be freed. 134s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74762 files and directories currently installed.) 134s Removing python3.12 (3.12.8-3) ... 134s Removing python3.12-minimal (3.12.8-3) ... 135s /usr/bin/py3clean:125: DeprecationWarning: glob.glob1 is deprecated and will be removed in Python 3.15. Use glob.glob and pass a directory to its root_dir argument instead. 135s for fn in glob1(directory, "%s.%s.py[co]" % (fname, magic_tag)): 135s Processing triggers for man-db (2.13.0-1) ... 135s Processing triggers for systemd (257-2ubuntu1) ... 136s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74734 files and directories currently installed.) 136s Purging configuration files for python3.12-minimal (3.12.8-3) ... 138s autopkgtest [23:33:01]: testbed running kernel: Linux 6.11.0-8-generic #8-Ubuntu SMP Mon Sep 16 13:49:23 UTC 2024 138s autopkgtest [23:33:01]: @@@@@@@@@@@@@@@@@@@@ apt-source pymol 142s Get:1 http://ftpmaster.internal/ubuntu plucky/universe pymol 3.0.0+dfsg-1build1 (dsc) [2304 B] 142s Get:2 http://ftpmaster.internal/ubuntu plucky/universe pymol 3.0.0+dfsg-1build1 (tar) [22.0 MB] 142s Get:3 http://ftpmaster.internal/ubuntu plucky/universe pymol 3.0.0+dfsg-1build1 (diff) [57.7 kB] 143s gpgv: Signature made Thu Nov 14 18:31:58 2024 UTC 143s gpgv: using RSA key 568BF22A66337CBFC9A6B9B72C83DBC8E9BD0E37 143s gpgv: Can't check signature: No public key 143s dpkg-source: warning: cannot verify inline signature for ./pymol_3.0.0+dfsg-1build1.dsc: no acceptable signature found 144s autopkgtest [23:33:07]: testing package pymol version 3.0.0+dfsg-1build1 145s autopkgtest [23:33:08]: build not needed 149s autopkgtest [23:33:12]: test command1: preparing testbed 149s Reading package lists... 149s Building dependency tree... 149s Reading state information... 149s Starting pkgProblemResolver with broken count: 0 149s Starting 2 pkgProblemResolver with broken count: 0 149s Done 149s The following NEW packages will be installed: 149s fontconfig fontconfig-config fonts-dejavu-core fonts-dejavu-mono libaec0 149s libavahi-client3 libavahi-common-data libavahi-common3 libblas3 libcups2t64 149s libdouble-conversion3 libdrm-radeon1 libegl-mesa0 libegl1 libfontconfig1 149s libgbm1 libgfortran5 libgl1 libgl1-mesa-dri libglapi-mesa libglew2.2 149s libglu1-mesa libglvnd0 libglx-mesa0 libglx0 libgomp1 libgraphite2-3 149s libharfbuzz0b libhdf5-103-1t64 libhdf5-hl-100t64 libice6 libinput-bin 149s libinput10 libjpeg-turbo8 libjpeg8 liblapack3 libmd4c0 libmtdev1t64 149s libnetcdf19t64 libopengl0 libpcre2-16-0 libqt5core5t64 libqt5dbus5t64 149s libqt5designer5 libqt5gui5t64 libqt5help5 libqt5network5t64 libqt5opengl5t64 149s libqt5printsupport5t64 libqt5sql5t64 libqt5test5t64 libqt5widgets5t64 149s libqt5xml5t64 libsm6 libsz2 libvulkan1 libwacom-common libwacom9 149s libwayland-client0 libwayland-server0 libx11-xcb1 libxcb-dri2-0 149s libxcb-dri3-0 libxcb-glx0 libxcb-icccm4 libxcb-image0 libxcb-keysyms1 149s libxcb-present0 libxcb-randr0 libxcb-render-util0 libxcb-render0 149s libxcb-shape0 libxcb-shm0 libxcb-sync1 libxcb-util1 libxcb-xfixes0 149s libxcb-xinerama0 libxcb-xinput0 libxcb-xkb1 libxfixes3 libxkbcommon-x11-0 149s libxrender1 libxshmfence1 libxxf86vm1 mesa-libgallium pymol pymol-data 149s python3-numpy python3-opengl python3-pymol python3-pyqt5 149s python3-pyqt5.qtopengl python3-pyqt5.sip x11-common 150s 0 upgraded, 94 newly installed, 0 to remove and 0 not upgraded. 150s Need to get 52.6 MB of archives. 150s After this operation, 228 MB of additional disk space will be used. 150s Get:1 http://ftpmaster.internal/ubuntu plucky/main ppc64el fonts-dejavu-mono all 2.37-8 [502 kB] 150s Get:2 http://ftpmaster.internal/ubuntu plucky/main ppc64el fonts-dejavu-core all 2.37-8 [835 kB] 150s Get:3 http://ftpmaster.internal/ubuntu plucky/main ppc64el fontconfig-config ppc64el 2.15.0-1.1ubuntu2 [37.4 kB] 150s Get:4 http://ftpmaster.internal/ubuntu plucky/main ppc64el libfontconfig1 ppc64el 2.15.0-1.1ubuntu2 [190 kB] 150s Get:5 http://ftpmaster.internal/ubuntu plucky/main ppc64el fontconfig ppc64el 2.15.0-1.1ubuntu2 [192 kB] 150s Get:6 http://ftpmaster.internal/ubuntu plucky/universe ppc64el libaec0 ppc64el 1.1.3-1 [30.1 kB] 150s Get:7 http://ftpmaster.internal/ubuntu plucky/main ppc64el libavahi-common-data ppc64el 0.8-14ubuntu1 [30.5 kB] 150s Get:8 http://ftpmaster.internal/ubuntu plucky/main ppc64el libavahi-common3 ppc64el 0.8-14ubuntu1 [26.0 kB] 150s Get:9 http://ftpmaster.internal/ubuntu plucky/main ppc64el libavahi-client3 ppc64el 0.8-14ubuntu1 [31.0 kB] 150s Get:10 http://ftpmaster.internal/ubuntu plucky/main ppc64el libblas3 ppc64el 3.12.0-4 [222 kB] 150s Get:11 http://ftpmaster.internal/ubuntu plucky/main ppc64el libcups2t64 ppc64el 2.4.11-0ubuntu2 [347 kB] 150s Get:12 http://ftpmaster.internal/ubuntu plucky/universe ppc64el libdouble-conversion3 ppc64el 3.3.0-1build1 [45.7 kB] 150s Get:13 http://ftpmaster.internal/ubuntu plucky/main ppc64el libdrm-radeon1 ppc64el 2.4.123-1 [29.0 kB] 150s Get:14 http://ftpmaster.internal/ubuntu plucky/main ppc64el libwayland-server0 ppc64el 1.23.0-1 [41.3 kB] 150s Get:15 http://ftpmaster.internal/ubuntu plucky/main ppc64el libxcb-randr0 ppc64el 1.17.0-2 [19.1 kB] 150s Get:16 http://ftpmaster.internal/ubuntu plucky/main ppc64el libglapi-mesa ppc64el 24.2.8-1ubuntu1 [44.6 kB] 150s Get:17 http://ftpmaster.internal/ubuntu plucky/main ppc64el libx11-xcb1 ppc64el 2:1.8.10-2 [8008 B] 150s Get:18 http://ftpmaster.internal/ubuntu plucky/main ppc64el libxcb-dri2-0 ppc64el 1.17.0-2 [7508 B] 150s Get:19 http://ftpmaster.internal/ubuntu plucky/main ppc64el libxcb-dri3-0 ppc64el 1.17.0-2 [7842 B] 150s Get:20 http://ftpmaster.internal/ubuntu plucky/main ppc64el libxcb-present0 ppc64el 1.17.0-2 [6276 B] 150s Get:21 http://ftpmaster.internal/ubuntu plucky/main ppc64el libxcb-sync1 ppc64el 1.17.0-2 [9804 B] 150s Get:22 http://ftpmaster.internal/ubuntu plucky/main ppc64el libxcb-xfixes0 ppc64el 1.17.0-2 [10.7 kB] 150s Get:23 http://ftpmaster.internal/ubuntu plucky/main ppc64el libxshmfence1 ppc64el 1.3-1build5 [4964 B] 150s Get:24 http://ftpmaster.internal/ubuntu plucky/main ppc64el mesa-libgallium ppc64el 24.2.8-1ubuntu1 [9164 kB] 151s Get:25 http://ftpmaster.internal/ubuntu plucky/main ppc64el libgbm1 ppc64el 24.2.8-1ubuntu1 [38.2 kB] 151s Get:26 http://ftpmaster.internal/ubuntu plucky/main ppc64el libwayland-client0 ppc64el 1.23.0-1 [31.4 kB] 151s Get:27 http://ftpmaster.internal/ubuntu plucky/main ppc64el libxcb-shm0 ppc64el 1.17.0-2 [5980 B] 151s Get:28 http://ftpmaster.internal/ubuntu plucky/main ppc64el libegl-mesa0 ppc64el 24.2.8-1ubuntu1 [163 kB] 151s Get:29 http://ftpmaster.internal/ubuntu plucky/main ppc64el libgfortran5 ppc64el 14.2.0-12ubuntu1 [571 kB] 151s Get:30 http://ftpmaster.internal/ubuntu plucky/main ppc64el libvulkan1 ppc64el 1.3.296.0-1 [163 kB] 151s Get:31 http://ftpmaster.internal/ubuntu plucky/main ppc64el libgl1-mesa-dri ppc64el 24.2.8-1ubuntu1 [34.1 kB] 151s Get:32 http://ftpmaster.internal/ubuntu plucky/main ppc64el libglvnd0 ppc64el 1.7.0-1build1 [72.4 kB] 151s Get:33 http://ftpmaster.internal/ubuntu plucky/main ppc64el libxcb-glx0 ppc64el 1.17.0-2 [26.3 kB] 151s Get:34 http://ftpmaster.internal/ubuntu plucky/main ppc64el libxfixes3 ppc64el 1:6.0.0-2build1 [11.8 kB] 151s Get:35 http://ftpmaster.internal/ubuntu plucky/main ppc64el libxxf86vm1 ppc64el 1:1.1.4-1build4 [11.1 kB] 151s Get:36 http://ftpmaster.internal/ubuntu plucky/main ppc64el libglx-mesa0 ppc64el 24.2.8-1ubuntu1 [187 kB] 151s Get:37 http://ftpmaster.internal/ubuntu plucky/main ppc64el libglx0 ppc64el 1.7.0-1build1 [42.7 kB] 151s Get:38 http://ftpmaster.internal/ubuntu plucky/main ppc64el libgl1 ppc64el 1.7.0-1build1 [107 kB] 151s Get:39 http://ftpmaster.internal/ubuntu plucky/universe ppc64el libglew2.2 ppc64el 2.2.0-4build1 [186 kB] 151s Get:40 http://ftpmaster.internal/ubuntu plucky/main ppc64el libgomp1 ppc64el 14.2.0-12ubuntu1 [161 kB] 151s Get:41 http://ftpmaster.internal/ubuntu plucky/main ppc64el libgraphite2-3 ppc64el 1.3.14-2ubuntu1 [84.6 kB] 151s Get:42 http://ftpmaster.internal/ubuntu plucky/main ppc64el libharfbuzz0b ppc64el 10.1.0-1 [597 kB] 151s Get:43 http://ftpmaster.internal/ubuntu plucky/universe ppc64el libsz2 ppc64el 1.1.3-1 [5566 B] 151s Get:44 http://ftpmaster.internal/ubuntu plucky/universe ppc64el libhdf5-103-1t64 ppc64el 1.10.10+repack-5ubuntu1 [1394 kB] 151s Get:45 http://ftpmaster.internal/ubuntu plucky/universe ppc64el libhdf5-hl-100t64 ppc64el 1.10.10+repack-5ubuntu1 [71.2 kB] 151s Get:46 http://ftpmaster.internal/ubuntu plucky/main ppc64el x11-common all 1:7.7+23ubuntu3 [21.7 kB] 151s Get:47 http://ftpmaster.internal/ubuntu plucky/main ppc64el libice6 ppc64el 2:1.1.1-1 [49.9 kB] 151s Get:48 http://ftpmaster.internal/ubuntu plucky/main ppc64el libwacom-common all 2.13.0-1 [98.6 kB] 151s Get:49 http://ftpmaster.internal/ubuntu plucky/main ppc64el libwacom9 ppc64el 2.13.0-1 [31.2 kB] 151s Get:50 http://ftpmaster.internal/ubuntu plucky/main ppc64el libinput-bin ppc64el 1.26.2-1 [23.5 kB] 151s Get:51 http://ftpmaster.internal/ubuntu plucky/main ppc64el libmtdev1t64 ppc64el 1.1.6-1.2 [18.7 kB] 151s Get:52 http://ftpmaster.internal/ubuntu plucky/main ppc64el libinput10 ppc64el 1.26.2-1 [164 kB] 151s Get:53 http://ftpmaster.internal/ubuntu plucky/main ppc64el libjpeg-turbo8 ppc64el 2.1.5-3ubuntu2 [215 kB] 151s Get:54 http://ftpmaster.internal/ubuntu plucky/main ppc64el libjpeg8 ppc64el 8c-2ubuntu11 [2148 B] 151s Get:55 http://ftpmaster.internal/ubuntu plucky/main ppc64el liblapack3 ppc64el 3.12.0-4 [2814 kB] 151s Get:56 http://ftpmaster.internal/ubuntu plucky/universe ppc64el libmd4c0 ppc64el 0.5.2-2 [54.5 kB] 151s Get:57 http://ftpmaster.internal/ubuntu plucky/universe ppc64el libnetcdf19t64 ppc64el 1:4.9.2-6ubuntu1 [596 kB] 151s Get:58 http://ftpmaster.internal/ubuntu plucky/main ppc64el libpcre2-16-0 ppc64el 10.42-4ubuntu3 [254 kB] 151s Get:59 http://ftpmaster.internal/ubuntu plucky/universe ppc64el libqt5core5t64 ppc64el 5.15.15+dfsg-1ubuntu1 [2185 kB] 151s Get:60 http://ftpmaster.internal/ubuntu plucky/universe ppc64el libqt5dbus5t64 ppc64el 5.15.15+dfsg-1ubuntu1 [242 kB] 151s Get:61 http://ftpmaster.internal/ubuntu plucky/main ppc64el libegl1 ppc64el 1.7.0-1build1 [34.1 kB] 151s Get:62 http://ftpmaster.internal/ubuntu plucky/universe ppc64el libqt5network5t64 ppc64el 5.15.15+dfsg-1ubuntu1 [808 kB] 151s Get:63 http://ftpmaster.internal/ubuntu plucky/main ppc64el libsm6 ppc64el 2:1.2.4-1 [18.4 kB] 151s Get:64 http://ftpmaster.internal/ubuntu plucky/main ppc64el libxcb-icccm4 ppc64el 0.4.2-1 [11.4 kB] 151s Get:65 http://ftpmaster.internal/ubuntu plucky/main ppc64el libxcb-util1 ppc64el 0.4.0-1build3 [11.2 kB] 151s Get:66 http://ftpmaster.internal/ubuntu plucky/main ppc64el libxcb-image0 ppc64el 0.4.0-2build1 [12.4 kB] 151s Get:67 http://ftpmaster.internal/ubuntu plucky/main ppc64el libxcb-keysyms1 ppc64el 0.4.0-1build4 [8522 B] 151s Get:68 http://ftpmaster.internal/ubuntu plucky/main ppc64el libxcb-render0 ppc64el 1.17.0-2 [17.2 kB] 152s Get:69 http://ftpmaster.internal/ubuntu plucky/main ppc64el libxcb-render-util0 ppc64el 0.3.9-1build4 [10.8 kB] 152s Get:70 http://ftpmaster.internal/ubuntu plucky/main ppc64el libxcb-shape0 ppc64el 1.17.0-2 [6310 B] 152s Get:71 http://ftpmaster.internal/ubuntu plucky/main ppc64el libxcb-xinerama0 ppc64el 1.17.0-2 [5524 B] 152s Get:72 http://ftpmaster.internal/ubuntu plucky/main ppc64el libxcb-xinput0 ppc64el 1.17.0-2 [36.9 kB] 152s Get:73 http://ftpmaster.internal/ubuntu plucky/main ppc64el libxcb-xkb1 ppc64el 1.17.0-2 [37.6 kB] 152s Get:74 http://ftpmaster.internal/ubuntu plucky/main ppc64el libxkbcommon-x11-0 ppc64el 1.7.0-2 [15.3 kB] 152s Get:75 http://ftpmaster.internal/ubuntu plucky/main ppc64el libxrender1 ppc64el 1:0.9.10-1.1build1 [23.1 kB] 152s Get:76 http://ftpmaster.internal/ubuntu plucky/universe ppc64el libqt5gui5t64 ppc64el 5.15.15+dfsg-1ubuntu1 [4131 kB] 152s Get:77 http://ftpmaster.internal/ubuntu plucky/universe ppc64el libqt5widgets5t64 ppc64el 5.15.15+dfsg-1ubuntu1 [2792 kB] 152s Get:78 http://ftpmaster.internal/ubuntu plucky/universe ppc64el libqt5xml5t64 ppc64el 5.15.15+dfsg-1ubuntu1 [135 kB] 152s Get:79 http://ftpmaster.internal/ubuntu plucky/universe ppc64el libqt5designer5 ppc64el 5.15.15-4 [2914 kB] 152s Get:80 http://ftpmaster.internal/ubuntu plucky/universe ppc64el libqt5sql5t64 ppc64el 5.15.15+dfsg-1ubuntu1 [135 kB] 152s Get:81 http://ftpmaster.internal/ubuntu plucky/universe ppc64el libqt5help5 ppc64el 5.15.15-4 [179 kB] 152s Get:82 http://ftpmaster.internal/ubuntu plucky/universe ppc64el libqt5opengl5t64 ppc64el 5.15.15+dfsg-1ubuntu1 [164 kB] 152s Get:83 http://ftpmaster.internal/ubuntu plucky/universe ppc64el libqt5printsupport5t64 ppc64el 5.15.15+dfsg-1ubuntu1 [222 kB] 152s Get:84 http://ftpmaster.internal/ubuntu plucky/universe ppc64el libqt5test5t64 ppc64el 5.15.15+dfsg-1ubuntu1 [156 kB] 152s Get:85 http://ftpmaster.internal/ubuntu plucky/main ppc64el python3-numpy ppc64el 1:1.26.4+ds-12 [4917 kB] 152s Get:86 http://ftpmaster.internal/ubuntu plucky/main ppc64el libopengl0 ppc64el 1.7.0-1build1 [35.5 kB] 152s Get:87 http://ftpmaster.internal/ubuntu plucky/main ppc64el libglu1-mesa ppc64el 9.0.2-1.1build1 [276 kB] 152s Get:88 http://ftpmaster.internal/ubuntu plucky/universe ppc64el python3-opengl all 3.1.7+dfsg-1 [612 kB] 152s Get:89 http://ftpmaster.internal/ubuntu plucky/universe ppc64el python3-pyqt5.sip ppc64el 12.16.1-1 [85.3 kB] 152s Get:90 http://ftpmaster.internal/ubuntu plucky/universe ppc64el python3-pyqt5 ppc64el 5.15.11+dfsg-1build1 [2650 kB] 152s Get:91 http://ftpmaster.internal/ubuntu plucky/universe ppc64el python3-pyqt5.qtopengl ppc64el 5.15.11+dfsg-1build1 [118 kB] 152s Get:92 http://ftpmaster.internal/ubuntu plucky/universe ppc64el pymol-data all 3.0.0+dfsg-1build1 [1394 kB] 152s Get:93 http://ftpmaster.internal/ubuntu plucky/universe ppc64el python3-pymol ppc64el 3.0.0+dfsg-1build1 [7912 kB] 153s Get:94 http://ftpmaster.internal/ubuntu plucky/universe ppc64el pymol all 3.0.0+dfsg-1build1 [126 kB] 153s Fetched 52.6 MB in 3s (16.8 MB/s) 153s Selecting previously unselected package fonts-dejavu-mono. 153s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74734 files and directories currently installed.) 153s Preparing to unpack .../00-fonts-dejavu-mono_2.37-8_all.deb ... 153s Unpacking fonts-dejavu-mono (2.37-8) ... 153s Selecting previously unselected package fonts-dejavu-core. 153s Preparing to unpack .../01-fonts-dejavu-core_2.37-8_all.deb ... 153s Unpacking fonts-dejavu-core (2.37-8) ... 153s Selecting previously unselected package fontconfig-config. 153s Preparing to unpack .../02-fontconfig-config_2.15.0-1.1ubuntu2_ppc64el.deb ... 153s Unpacking fontconfig-config (2.15.0-1.1ubuntu2) ... 153s Selecting previously unselected package libfontconfig1:ppc64el. 153s Preparing to unpack .../03-libfontconfig1_2.15.0-1.1ubuntu2_ppc64el.deb ... 153s Unpacking libfontconfig1:ppc64el (2.15.0-1.1ubuntu2) ... 153s Selecting previously unselected package fontconfig. 153s Preparing to unpack .../04-fontconfig_2.15.0-1.1ubuntu2_ppc64el.deb ... 153s Unpacking fontconfig (2.15.0-1.1ubuntu2) ... 153s Selecting previously unselected package libaec0:ppc64el. 153s Preparing to unpack .../05-libaec0_1.1.3-1_ppc64el.deb ... 153s Unpacking libaec0:ppc64el (1.1.3-1) ... 153s Selecting previously unselected package libavahi-common-data:ppc64el. 153s Preparing to unpack .../06-libavahi-common-data_0.8-14ubuntu1_ppc64el.deb ... 153s Unpacking libavahi-common-data:ppc64el (0.8-14ubuntu1) ... 153s Selecting previously unselected package libavahi-common3:ppc64el. 153s Preparing to unpack .../07-libavahi-common3_0.8-14ubuntu1_ppc64el.deb ... 153s Unpacking libavahi-common3:ppc64el (0.8-14ubuntu1) ... 153s Selecting previously unselected package libavahi-client3:ppc64el. 153s Preparing to unpack .../08-libavahi-client3_0.8-14ubuntu1_ppc64el.deb ... 153s Unpacking libavahi-client3:ppc64el (0.8-14ubuntu1) ... 153s Selecting previously unselected package libblas3:ppc64el. 153s Preparing to unpack .../09-libblas3_3.12.0-4_ppc64el.deb ... 153s Unpacking libblas3:ppc64el (3.12.0-4) ... 153s Selecting previously unselected package libcups2t64:ppc64el. 153s Preparing to unpack .../10-libcups2t64_2.4.11-0ubuntu2_ppc64el.deb ... 153s Unpacking libcups2t64:ppc64el (2.4.11-0ubuntu2) ... 153s Selecting previously unselected package libdouble-conversion3:ppc64el. 153s Preparing to unpack .../11-libdouble-conversion3_3.3.0-1build1_ppc64el.deb ... 153s Unpacking libdouble-conversion3:ppc64el (3.3.0-1build1) ... 153s Selecting previously unselected package libdrm-radeon1:ppc64el. 153s Preparing to unpack .../12-libdrm-radeon1_2.4.123-1_ppc64el.deb ... 153s Unpacking libdrm-radeon1:ppc64el (2.4.123-1) ... 153s Selecting previously unselected package libwayland-server0:ppc64el. 153s Preparing to unpack .../13-libwayland-server0_1.23.0-1_ppc64el.deb ... 153s Unpacking libwayland-server0:ppc64el (1.23.0-1) ... 153s Selecting previously unselected package libxcb-randr0:ppc64el. 153s Preparing to unpack .../14-libxcb-randr0_1.17.0-2_ppc64el.deb ... 153s Unpacking libxcb-randr0:ppc64el (1.17.0-2) ... 153s Selecting previously unselected package libglapi-mesa:ppc64el. 153s Preparing to unpack .../15-libglapi-mesa_24.2.8-1ubuntu1_ppc64el.deb ... 153s Unpacking libglapi-mesa:ppc64el (24.2.8-1ubuntu1) ... 153s Selecting previously unselected package libx11-xcb1:ppc64el. 153s Preparing to unpack .../16-libx11-xcb1_2%3a1.8.10-2_ppc64el.deb ... 153s Unpacking libx11-xcb1:ppc64el (2:1.8.10-2) ... 153s Selecting previously unselected package libxcb-dri2-0:ppc64el. 153s Preparing to unpack .../17-libxcb-dri2-0_1.17.0-2_ppc64el.deb ... 153s Unpacking libxcb-dri2-0:ppc64el (1.17.0-2) ... 153s Selecting previously unselected package libxcb-dri3-0:ppc64el. 153s Preparing to unpack .../18-libxcb-dri3-0_1.17.0-2_ppc64el.deb ... 153s Unpacking libxcb-dri3-0:ppc64el (1.17.0-2) ... 153s Selecting previously unselected package libxcb-present0:ppc64el. 153s Preparing to unpack .../19-libxcb-present0_1.17.0-2_ppc64el.deb ... 153s Unpacking libxcb-present0:ppc64el (1.17.0-2) ... 154s Selecting previously unselected package libxcb-sync1:ppc64el. 154s Preparing to unpack .../20-libxcb-sync1_1.17.0-2_ppc64el.deb ... 154s Unpacking libxcb-sync1:ppc64el (1.17.0-2) ... 154s Selecting previously unselected package libxcb-xfixes0:ppc64el. 154s Preparing to unpack .../21-libxcb-xfixes0_1.17.0-2_ppc64el.deb ... 154s Unpacking libxcb-xfixes0:ppc64el (1.17.0-2) ... 154s Selecting previously unselected package libxshmfence1:ppc64el. 154s Preparing to unpack .../22-libxshmfence1_1.3-1build5_ppc64el.deb ... 154s Unpacking libxshmfence1:ppc64el (1.3-1build5) ... 154s Selecting previously unselected package mesa-libgallium:ppc64el. 154s Preparing to unpack .../23-mesa-libgallium_24.2.8-1ubuntu1_ppc64el.deb ... 154s Unpacking mesa-libgallium:ppc64el (24.2.8-1ubuntu1) ... 154s Selecting previously unselected package libgbm1:ppc64el. 154s Preparing to unpack .../24-libgbm1_24.2.8-1ubuntu1_ppc64el.deb ... 154s Unpacking libgbm1:ppc64el (24.2.8-1ubuntu1) ... 154s Selecting previously unselected package libwayland-client0:ppc64el. 154s Preparing to unpack .../25-libwayland-client0_1.23.0-1_ppc64el.deb ... 154s Unpacking libwayland-client0:ppc64el (1.23.0-1) ... 154s Selecting previously unselected package libxcb-shm0:ppc64el. 154s Preparing to unpack .../26-libxcb-shm0_1.17.0-2_ppc64el.deb ... 154s Unpacking libxcb-shm0:ppc64el (1.17.0-2) ... 154s Selecting previously unselected package libegl-mesa0:ppc64el. 154s Preparing to unpack .../27-libegl-mesa0_24.2.8-1ubuntu1_ppc64el.deb ... 154s Unpacking libegl-mesa0:ppc64el (24.2.8-1ubuntu1) ... 154s Selecting previously unselected package libgfortran5:ppc64el. 154s Preparing to unpack .../28-libgfortran5_14.2.0-12ubuntu1_ppc64el.deb ... 154s Unpacking libgfortran5:ppc64el (14.2.0-12ubuntu1) ... 154s Selecting previously unselected package libvulkan1:ppc64el. 154s Preparing to unpack .../29-libvulkan1_1.3.296.0-1_ppc64el.deb ... 154s Unpacking libvulkan1:ppc64el (1.3.296.0-1) ... 154s Selecting previously unselected package libgl1-mesa-dri:ppc64el. 154s Preparing to unpack .../30-libgl1-mesa-dri_24.2.8-1ubuntu1_ppc64el.deb ... 154s Unpacking libgl1-mesa-dri:ppc64el (24.2.8-1ubuntu1) ... 154s Selecting previously unselected package libglvnd0:ppc64el. 154s Preparing to unpack .../31-libglvnd0_1.7.0-1build1_ppc64el.deb ... 154s Unpacking libglvnd0:ppc64el (1.7.0-1build1) ... 154s Selecting previously unselected package libxcb-glx0:ppc64el. 154s Preparing to unpack .../32-libxcb-glx0_1.17.0-2_ppc64el.deb ... 154s Unpacking libxcb-glx0:ppc64el (1.17.0-2) ... 154s Selecting previously unselected package libxfixes3:ppc64el. 154s Preparing to unpack .../33-libxfixes3_1%3a6.0.0-2build1_ppc64el.deb ... 154s Unpacking libxfixes3:ppc64el (1:6.0.0-2build1) ... 154s Selecting previously unselected package libxxf86vm1:ppc64el. 154s Preparing to unpack .../34-libxxf86vm1_1%3a1.1.4-1build4_ppc64el.deb ... 154s Unpacking libxxf86vm1:ppc64el (1:1.1.4-1build4) ... 154s Selecting previously unselected package libglx-mesa0:ppc64el. 154s Preparing to unpack .../35-libglx-mesa0_24.2.8-1ubuntu1_ppc64el.deb ... 154s Unpacking libglx-mesa0:ppc64el (24.2.8-1ubuntu1) ... 154s Selecting previously unselected package libglx0:ppc64el. 154s Preparing to unpack .../36-libglx0_1.7.0-1build1_ppc64el.deb ... 154s Unpacking libglx0:ppc64el (1.7.0-1build1) ... 154s Selecting previously unselected package libgl1:ppc64el. 154s Preparing to unpack .../37-libgl1_1.7.0-1build1_ppc64el.deb ... 154s Unpacking libgl1:ppc64el (1.7.0-1build1) ... 154s Selecting previously unselected package libglew2.2:ppc64el. 154s Preparing to unpack .../38-libglew2.2_2.2.0-4build1_ppc64el.deb ... 154s Unpacking libglew2.2:ppc64el (2.2.0-4build1) ... 154s Selecting previously unselected package libgomp1:ppc64el. 154s Preparing to unpack .../39-libgomp1_14.2.0-12ubuntu1_ppc64el.deb ... 154s Unpacking libgomp1:ppc64el (14.2.0-12ubuntu1) ... 154s Selecting previously unselected package libgraphite2-3:ppc64el. 154s Preparing to unpack .../40-libgraphite2-3_1.3.14-2ubuntu1_ppc64el.deb ... 154s Unpacking libgraphite2-3:ppc64el (1.3.14-2ubuntu1) ... 154s Selecting previously unselected package libharfbuzz0b:ppc64el. 154s Preparing to unpack .../41-libharfbuzz0b_10.1.0-1_ppc64el.deb ... 154s Unpacking libharfbuzz0b:ppc64el (10.1.0-1) ... 154s Selecting previously unselected package libsz2:ppc64el. 154s Preparing to unpack .../42-libsz2_1.1.3-1_ppc64el.deb ... 154s Unpacking libsz2:ppc64el (1.1.3-1) ... 154s Selecting previously unselected package libhdf5-103-1t64:ppc64el. 154s Preparing to unpack .../43-libhdf5-103-1t64_1.10.10+repack-5ubuntu1_ppc64el.deb ... 154s Unpacking libhdf5-103-1t64:ppc64el (1.10.10+repack-5ubuntu1) ... 154s Selecting previously unselected package libhdf5-hl-100t64:ppc64el. 154s Preparing to unpack .../44-libhdf5-hl-100t64_1.10.10+repack-5ubuntu1_ppc64el.deb ... 154s Unpacking libhdf5-hl-100t64:ppc64el (1.10.10+repack-5ubuntu1) ... 154s Selecting previously unselected package x11-common. 154s Preparing to unpack .../45-x11-common_1%3a7.7+23ubuntu3_all.deb ... 154s Unpacking x11-common (1:7.7+23ubuntu3) ... 154s Selecting previously unselected package libice6:ppc64el. 154s Preparing to unpack .../46-libice6_2%3a1.1.1-1_ppc64el.deb ... 154s Unpacking libice6:ppc64el (2:1.1.1-1) ... 154s Selecting previously unselected package libwacom-common. 154s Preparing to unpack .../47-libwacom-common_2.13.0-1_all.deb ... 154s Unpacking libwacom-common (2.13.0-1) ... 154s Selecting previously unselected package libwacom9:ppc64el. 154s Preparing to unpack .../48-libwacom9_2.13.0-1_ppc64el.deb ... 154s Unpacking libwacom9:ppc64el (2.13.0-1) ... 154s Selecting previously unselected package libinput-bin. 154s Preparing to unpack .../49-libinput-bin_1.26.2-1_ppc64el.deb ... 154s Unpacking libinput-bin (1.26.2-1) ... 154s Selecting previously unselected package libmtdev1t64:ppc64el. 154s Preparing to unpack .../50-libmtdev1t64_1.1.6-1.2_ppc64el.deb ... 154s Unpacking libmtdev1t64:ppc64el (1.1.6-1.2) ... 154s Selecting previously unselected package libinput10:ppc64el. 154s Preparing to unpack .../51-libinput10_1.26.2-1_ppc64el.deb ... 154s Unpacking libinput10:ppc64el (1.26.2-1) ... 154s Selecting previously unselected package libjpeg-turbo8:ppc64el. 154s Preparing to unpack .../52-libjpeg-turbo8_2.1.5-3ubuntu2_ppc64el.deb ... 154s Unpacking libjpeg-turbo8:ppc64el (2.1.5-3ubuntu2) ... 154s Selecting previously unselected package libjpeg8:ppc64el. 154s Preparing to unpack .../53-libjpeg8_8c-2ubuntu11_ppc64el.deb ... 154s Unpacking libjpeg8:ppc64el (8c-2ubuntu11) ... 154s Selecting previously unselected package liblapack3:ppc64el. 154s Preparing to unpack .../54-liblapack3_3.12.0-4_ppc64el.deb ... 154s Unpacking liblapack3:ppc64el (3.12.0-4) ... 154s Selecting previously unselected package libmd4c0:ppc64el. 154s Preparing to unpack .../55-libmd4c0_0.5.2-2_ppc64el.deb ... 154s Unpacking libmd4c0:ppc64el (0.5.2-2) ... 154s Selecting previously unselected package libnetcdf19t64:ppc64el. 154s Preparing to unpack .../56-libnetcdf19t64_1%3a4.9.2-6ubuntu1_ppc64el.deb ... 154s Unpacking libnetcdf19t64:ppc64el (1:4.9.2-6ubuntu1) ... 154s Selecting previously unselected package libpcre2-16-0:ppc64el. 154s Preparing to unpack .../57-libpcre2-16-0_10.42-4ubuntu3_ppc64el.deb ... 154s Unpacking libpcre2-16-0:ppc64el (10.42-4ubuntu3) ... 155s Selecting previously unselected package libqt5core5t64:ppc64el. 155s Preparing to unpack .../58-libqt5core5t64_5.15.15+dfsg-1ubuntu1_ppc64el.deb ... 155s Unpacking libqt5core5t64:ppc64el (5.15.15+dfsg-1ubuntu1) ... 155s Selecting previously unselected package libqt5dbus5t64:ppc64el. 155s Preparing to unpack .../59-libqt5dbus5t64_5.15.15+dfsg-1ubuntu1_ppc64el.deb ... 155s Unpacking libqt5dbus5t64:ppc64el (5.15.15+dfsg-1ubuntu1) ... 155s Selecting previously unselected package libegl1:ppc64el. 155s Preparing to unpack .../60-libegl1_1.7.0-1build1_ppc64el.deb ... 155s Unpacking libegl1:ppc64el (1.7.0-1build1) ... 155s Selecting previously unselected package libqt5network5t64:ppc64el. 155s Preparing to unpack .../61-libqt5network5t64_5.15.15+dfsg-1ubuntu1_ppc64el.deb ... 155s Unpacking libqt5network5t64:ppc64el (5.15.15+dfsg-1ubuntu1) ... 155s Selecting previously unselected package libsm6:ppc64el. 155s Preparing to unpack .../62-libsm6_2%3a1.2.4-1_ppc64el.deb ... 155s Unpacking libsm6:ppc64el (2:1.2.4-1) ... 155s Selecting previously unselected package libxcb-icccm4:ppc64el. 155s Preparing to unpack .../63-libxcb-icccm4_0.4.2-1_ppc64el.deb ... 155s Unpacking libxcb-icccm4:ppc64el (0.4.2-1) ... 155s Selecting previously unselected package libxcb-util1:ppc64el. 155s Preparing to unpack .../64-libxcb-util1_0.4.0-1build3_ppc64el.deb ... 155s Unpacking libxcb-util1:ppc64el (0.4.0-1build3) ... 155s Selecting previously unselected package libxcb-image0:ppc64el. 155s Preparing to unpack .../65-libxcb-image0_0.4.0-2build1_ppc64el.deb ... 155s Unpacking libxcb-image0:ppc64el (0.4.0-2build1) ... 155s Selecting previously unselected package libxcb-keysyms1:ppc64el. 155s Preparing to unpack .../66-libxcb-keysyms1_0.4.0-1build4_ppc64el.deb ... 155s Unpacking libxcb-keysyms1:ppc64el (0.4.0-1build4) ... 155s Selecting previously unselected package libxcb-render0:ppc64el. 155s Preparing to unpack .../67-libxcb-render0_1.17.0-2_ppc64el.deb ... 155s Unpacking libxcb-render0:ppc64el (1.17.0-2) ... 155s Selecting previously unselected package libxcb-render-util0:ppc64el. 155s Preparing to unpack .../68-libxcb-render-util0_0.3.9-1build4_ppc64el.deb ... 155s Unpacking libxcb-render-util0:ppc64el (0.3.9-1build4) ... 155s Selecting previously unselected package libxcb-shape0:ppc64el. 155s Preparing to unpack .../69-libxcb-shape0_1.17.0-2_ppc64el.deb ... 155s Unpacking libxcb-shape0:ppc64el (1.17.0-2) ... 155s Selecting previously unselected package libxcb-xinerama0:ppc64el. 155s Preparing to unpack .../70-libxcb-xinerama0_1.17.0-2_ppc64el.deb ... 155s Unpacking libxcb-xinerama0:ppc64el (1.17.0-2) ... 155s Selecting previously unselected package libxcb-xinput0:ppc64el. 155s Preparing to unpack .../71-libxcb-xinput0_1.17.0-2_ppc64el.deb ... 155s Unpacking libxcb-xinput0:ppc64el (1.17.0-2) ... 155s Selecting previously unselected package libxcb-xkb1:ppc64el. 155s Preparing to unpack .../72-libxcb-xkb1_1.17.0-2_ppc64el.deb ... 155s Unpacking libxcb-xkb1:ppc64el (1.17.0-2) ... 155s Selecting previously unselected package libxkbcommon-x11-0:ppc64el. 155s Preparing to unpack .../73-libxkbcommon-x11-0_1.7.0-2_ppc64el.deb ... 155s Unpacking libxkbcommon-x11-0:ppc64el (1.7.0-2) ... 155s Selecting previously unselected package libxrender1:ppc64el. 155s Preparing to unpack .../74-libxrender1_1%3a0.9.10-1.1build1_ppc64el.deb ... 155s Unpacking libxrender1:ppc64el (1:0.9.10-1.1build1) ... 155s Selecting previously unselected package libqt5gui5t64:ppc64el. 155s Preparing to unpack .../75-libqt5gui5t64_5.15.15+dfsg-1ubuntu1_ppc64el.deb ... 155s Unpacking libqt5gui5t64:ppc64el (5.15.15+dfsg-1ubuntu1) ... 155s Selecting previously unselected package libqt5widgets5t64:ppc64el. 155s Preparing to unpack .../76-libqt5widgets5t64_5.15.15+dfsg-1ubuntu1_ppc64el.deb ... 155s Unpacking libqt5widgets5t64:ppc64el (5.15.15+dfsg-1ubuntu1) ... 155s Selecting previously unselected package libqt5xml5t64:ppc64el. 155s Preparing to unpack .../77-libqt5xml5t64_5.15.15+dfsg-1ubuntu1_ppc64el.deb ... 155s Unpacking libqt5xml5t64:ppc64el (5.15.15+dfsg-1ubuntu1) ... 155s Selecting previously unselected package libqt5designer5:ppc64el. 155s Preparing to unpack .../78-libqt5designer5_5.15.15-4_ppc64el.deb ... 155s Unpacking libqt5designer5:ppc64el (5.15.15-4) ... 155s Selecting previously unselected package libqt5sql5t64:ppc64el. 155s Preparing to unpack .../79-libqt5sql5t64_5.15.15+dfsg-1ubuntu1_ppc64el.deb ... 155s Unpacking libqt5sql5t64:ppc64el (5.15.15+dfsg-1ubuntu1) ... 155s Selecting previously unselected package libqt5help5:ppc64el. 155s Preparing to unpack .../80-libqt5help5_5.15.15-4_ppc64el.deb ... 155s Unpacking libqt5help5:ppc64el (5.15.15-4) ... 155s Selecting previously unselected package libqt5opengl5t64:ppc64el. 155s Preparing to unpack .../81-libqt5opengl5t64_5.15.15+dfsg-1ubuntu1_ppc64el.deb ... 155s Unpacking libqt5opengl5t64:ppc64el (5.15.15+dfsg-1ubuntu1) ... 155s Selecting previously unselected package libqt5printsupport5t64:ppc64el. 155s Preparing to unpack .../82-libqt5printsupport5t64_5.15.15+dfsg-1ubuntu1_ppc64el.deb ... 155s Unpacking libqt5printsupport5t64:ppc64el (5.15.15+dfsg-1ubuntu1) ... 155s Selecting previously unselected package libqt5test5t64:ppc64el. 155s Preparing to unpack .../83-libqt5test5t64_5.15.15+dfsg-1ubuntu1_ppc64el.deb ... 155s Unpacking libqt5test5t64:ppc64el (5.15.15+dfsg-1ubuntu1) ... 155s Selecting previously unselected package python3-numpy. 155s Preparing to unpack .../84-python3-numpy_1%3a1.26.4+ds-12_ppc64el.deb ... 155s Unpacking python3-numpy (1:1.26.4+ds-12) ... 155s Selecting previously unselected package libopengl0:ppc64el. 155s Preparing to unpack .../85-libopengl0_1.7.0-1build1_ppc64el.deb ... 155s Unpacking libopengl0:ppc64el (1.7.0-1build1) ... 155s Selecting previously unselected package libglu1-mesa:ppc64el. 155s Preparing to unpack .../86-libglu1-mesa_9.0.2-1.1build1_ppc64el.deb ... 155s Unpacking libglu1-mesa:ppc64el (9.0.2-1.1build1) ... 155s Selecting previously unselected package python3-opengl. 155s Preparing to unpack .../87-python3-opengl_3.1.7+dfsg-1_all.deb ... 155s Unpacking python3-opengl (3.1.7+dfsg-1) ... 156s Selecting previously unselected package python3-pyqt5.sip. 156s Preparing to unpack .../88-python3-pyqt5.sip_12.16.1-1_ppc64el.deb ... 156s Unpacking python3-pyqt5.sip (12.16.1-1) ... 156s Selecting previously unselected package python3-pyqt5. 156s Preparing to unpack .../89-python3-pyqt5_5.15.11+dfsg-1build1_ppc64el.deb ... 156s Unpacking python3-pyqt5 (5.15.11+dfsg-1build1) ... 156s Selecting previously unselected package python3-pyqt5.qtopengl. 156s Preparing to unpack .../90-python3-pyqt5.qtopengl_5.15.11+dfsg-1build1_ppc64el.deb ... 156s Unpacking python3-pyqt5.qtopengl (5.15.11+dfsg-1build1) ... 156s Selecting previously unselected package pymol-data. 156s Preparing to unpack .../91-pymol-data_3.0.0+dfsg-1build1_all.deb ... 156s Unpacking pymol-data (3.0.0+dfsg-1build1) ... 156s Selecting previously unselected package python3-pymol. 156s Preparing to unpack .../92-python3-pymol_3.0.0+dfsg-1build1_ppc64el.deb ... 156s Unpacking python3-pymol (3.0.0+dfsg-1build1) ... 156s Selecting previously unselected package pymol. 156s Preparing to unpack .../93-pymol_3.0.0+dfsg-1build1_all.deb ... 156s Unpacking pymol (3.0.0+dfsg-1build1) ... 156s Setting up libgraphite2-3:ppc64el (1.3.14-2ubuntu1) ... 156s Setting up libxcb-dri3-0:ppc64el (1.17.0-2) ... 156s Setting up libwayland-server0:ppc64el (1.23.0-1) ... 156s Setting up libx11-xcb1:ppc64el (2:1.8.10-2) ... 156s Setting up libdouble-conversion3:ppc64el (3.3.0-1build1) ... 156s Setting up libxcb-xfixes0:ppc64el (1.17.0-2) ... 156s Setting up libxcb-xinput0:ppc64el (1.17.0-2) ... 156s Setting up libxrender1:ppc64el (1:0.9.10-1.1build1) ... 156s Setting up libxcb-render0:ppc64el (1.17.0-2) ... 156s Setting up libdrm-radeon1:ppc64el (2.4.123-1) ... 156s Setting up libglvnd0:ppc64el (1.7.0-1build1) ... 156s Setting up libxcb-glx0:ppc64el (1.17.0-2) ... 156s Setting up libxcb-keysyms1:ppc64el (0.4.0-1build4) ... 156s Setting up libxcb-shape0:ppc64el (1.17.0-2) ... 156s Setting up x11-common (1:7.7+23ubuntu3) ... 157s Setting up libxcb-render-util0:ppc64el (0.3.9-1build4) ... 157s Setting up libxcb-shm0:ppc64el (1.17.0-2) ... 157s Setting up libxcb-icccm4:ppc64el (0.4.2-1) ... 157s Setting up libgomp1:ppc64el (14.2.0-12ubuntu1) ... 157s Setting up libpcre2-16-0:ppc64el (10.42-4ubuntu3) ... 157s Setting up libaec0:ppc64el (1.1.3-1) ... 157s Setting up libopengl0:ppc64el (1.7.0-1build1) ... 157s Setting up libxcb-util1:ppc64el (0.4.0-1build3) ... 157s Setting up libxxf86vm1:ppc64el (1:1.1.4-1build4) ... 157s Setting up libxcb-xkb1:ppc64el (1.17.0-2) ... 157s Setting up libxcb-image0:ppc64el (0.4.0-2build1) ... 157s Setting up libxcb-present0:ppc64el (1.17.0-2) ... 157s Setting up libqt5core5t64:ppc64el (5.15.15+dfsg-1ubuntu1) ... 157s Setting up libblas3:ppc64el (3.12.0-4) ... 157s update-alternatives: using /usr/lib/powerpc64le-linux-gnu/blas/libblas.so.3 to provide /usr/lib/powerpc64le-linux-gnu/libblas.so.3 (libblas.so.3-powerpc64le-linux-gnu) in auto mode 157s Setting up libxcb-xinerama0:ppc64el (1.17.0-2) ... 157s Setting up libxfixes3:ppc64el (1:6.0.0-2build1) ... 157s Setting up libxcb-sync1:ppc64el (1.17.0-2) ... 157s Setting up libavahi-common-data:ppc64el (0.8-14ubuntu1) ... 157s Setting up pymol-data (3.0.0+dfsg-1build1) ... 157s Setting up libxkbcommon-x11-0:ppc64el (1.7.0-2) ... 157s Setting up fonts-dejavu-mono (2.37-8) ... 157s Setting up fonts-dejavu-core (2.37-8) ... 157s Setting up libjpeg-turbo8:ppc64el (2.1.5-3ubuntu2) ... 157s Setting up libglapi-mesa:ppc64el (24.2.8-1ubuntu1) ... 157s Setting up libgfortran5:ppc64el (14.2.0-12ubuntu1) ... 157s Setting up libvulkan1:ppc64el (1.3.296.0-1) ... 157s Setting up libxcb-dri2-0:ppc64el (1.17.0-2) ... 157s Setting up python3-pyqt5.sip (12.16.1-1) ... 157s Setting up libmtdev1t64:ppc64el (1.1.6-1.2) ... 157s Setting up libxshmfence1:ppc64el (1.3-1build5) ... 157s Setting up libxcb-randr0:ppc64el (1.17.0-2) ... 157s Setting up libqt5sql5t64:ppc64el (5.15.15+dfsg-1ubuntu1) ... 157s Setting up libmd4c0:ppc64el (0.5.2-2) ... 157s Setting up libharfbuzz0b:ppc64el (10.1.0-1) ... 157s Setting up libglu1-mesa:ppc64el (9.0.2-1.1build1) ... 157s Setting up libsz2:ppc64el (1.1.3-1) ... 157s Setting up libwacom-common (2.13.0-1) ... 157s Setting up libwayland-client0:ppc64el (1.23.0-1) ... 157s Setting up libjpeg8:ppc64el (8c-2ubuntu11) ... 157s Setting up libice6:ppc64el (2:1.1.1-1) ... 157s Setting up mesa-libgallium:ppc64el (24.2.8-1ubuntu1) ... 157s Setting up liblapack3:ppc64el (3.12.0-4) ... 157s update-alternatives: using /usr/lib/powerpc64le-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/powerpc64le-linux-gnu/liblapack.so.3 (liblapack.so.3-powerpc64le-linux-gnu) in auto mode 157s Setting up libqt5dbus5t64:ppc64el (5.15.15+dfsg-1ubuntu1) ... 157s Setting up libgbm1:ppc64el (24.2.8-1ubuntu1) ... 157s Setting up libwacom9:ppc64el (2.13.0-1) ... 157s Setting up fontconfig-config (2.15.0-1.1ubuntu2) ... 157s Setting up libgl1-mesa-dri:ppc64el (24.2.8-1ubuntu1) ... 157s Setting up libqt5network5t64:ppc64el (5.15.15+dfsg-1ubuntu1) ... 157s Setting up libavahi-common3:ppc64el (0.8-14ubuntu1) ... 157s Setting up libqt5xml5t64:ppc64el (5.15.15+dfsg-1ubuntu1) ... 157s Setting up libqt5test5t64:ppc64el (5.15.15+dfsg-1ubuntu1) ... 157s Setting up libinput-bin (1.26.2-1) ... 157s Setting up libegl-mesa0:ppc64el (24.2.8-1ubuntu1) ... 157s Setting up python3-numpy (1:1.26.4+ds-12) ... 159s Setting up libegl1:ppc64el (1.7.0-1build1) ... 159s Setting up libfontconfig1:ppc64el (2.15.0-1.1ubuntu2) ... 159s Setting up libhdf5-103-1t64:ppc64el (1.10.10+repack-5ubuntu1) ... 159s Setting up libsm6:ppc64el (2:1.2.4-1) ... 159s Setting up libavahi-client3:ppc64el (0.8-14ubuntu1) ... 159s Setting up libinput10:ppc64el (1.26.2-1) ... 159s Setting up libhdf5-hl-100t64:ppc64el (1.10.10+repack-5ubuntu1) ... 159s Setting up fontconfig (2.15.0-1.1ubuntu2) ... 161s Regenerating fonts cache... done. 161s Setting up libnetcdf19t64:ppc64el (1:4.9.2-6ubuntu1) ... 161s Setting up libglx-mesa0:ppc64el (24.2.8-1ubuntu1) ... 161s Setting up libglx0:ppc64el (1.7.0-1build1) ... 161s Setting up libgl1:ppc64el (1.7.0-1build1) ... 161s Setting up libglew2.2:ppc64el (2.2.0-4build1) ... 161s Setting up libcups2t64:ppc64el (2.4.11-0ubuntu2) ... 161s Setting up python3-opengl (3.1.7+dfsg-1) ... 161s /usr/lib/python3/dist-packages/OpenGL/GL/AMD/vertex_shader_tessellator.py:1: SyntaxWarning: invalid escape sequence '\ ' 161s '''OpenGL extension AMD.vertex_shader_tessellator 162s Setting up libqt5gui5t64:ppc64el (5.15.15+dfsg-1ubuntu1) ... 162s Setting up libqt5widgets5t64:ppc64el (5.15.15+dfsg-1ubuntu1) ... 162s Setting up libqt5help5:ppc64el (5.15.15-4) ... 162s Setting up libqt5opengl5t64:ppc64el (5.15.15+dfsg-1ubuntu1) ... 162s Setting up libqt5printsupport5t64:ppc64el (5.15.15+dfsg-1ubuntu1) ... 162s Setting up libqt5designer5:ppc64el (5.15.15-4) ... 162s Setting up python3-pyqt5 (5.15.11+dfsg-1build1) ... 162s Setting up python3-pyqt5.qtopengl (5.15.11+dfsg-1build1) ... 162s Setting up python3-pymol (3.0.0+dfsg-1build1) ... 163s Setting up pymol (3.0.0+dfsg-1build1) ... 163s Processing triggers for libc-bin (2.40-4ubuntu1) ... 163s Processing triggers for man-db (2.13.0-1) ... 164s Processing triggers for udev (257-2ubuntu1) ... 165s autopkgtest [23:33:28]: test command1: sh debian/tests/call-pymol-scripts examples/ \ "(start_pymol)|(xmlrpc01)|(sd_annotate)|(povray01)|(contact)|(dali)|(density)|(groel_es)|(packing)|(packsurf)|(ref_frame)|(ribosome)|(scenes2movie)|(ss_xfer)|(multiclip_ray)|(tkwindow)|(importing)" 165s autopkgtest [23:33:28]: test command1: [----------------------- 165s Search pymol scripts in /tmp/autopkgtest.07OKO9/build.v12/src/examples... 165s Processing new directory /tmp/autopkgtest.07OKO9/build.v12/src/examples 165s Run 'pymol -c /tmp/autopkgtest.07OKO9/build.v12/src/examples/chempy/generate_amber.py'... 166s Run 'pymol -c /tmp/autopkgtest.07OKO9/build.v12/src/examples/chempy/generate_mmff.py'... 166s Run 'pymol -c /tmp/autopkgtest.07OKO9/build.v12/src/examples/cookbook/area_diff.pml'... 166s Run 'pymol -c /tmp/autopkgtest.07OKO9/build.v12/src/examples/cookbook/build_peptide.py'... 167s Skip /tmp/autopkgtest.07OKO9/build.v12/src/examples/cookbook/contact.pml 167s Skip /tmp/autopkgtest.07OKO9/build.v12/src/examples/cookbook/dali.py 167s Skip /tmp/autopkgtest.07OKO9/build.v12/src/examples/cookbook/density.pml 167s Skip /tmp/autopkgtest.07OKO9/build.v12/src/examples/cookbook/groel_es.pml 167s Skip /tmp/autopkgtest.07OKO9/build.v12/src/examples/cookbook/multiclip_ray.pml 167s Skip /tmp/autopkgtest.07OKO9/build.v12/src/examples/cookbook/packing.pml 167s Skip /tmp/autopkgtest.07OKO9/build.v12/src/examples/cookbook/packsurf.pml 167s Skip /tmp/autopkgtest.07OKO9/build.v12/src/examples/cookbook/ref_frame.pml 167s Skip /tmp/autopkgtest.07OKO9/build.v12/src/examples/cookbook/ribosome.pml 167s Skip /tmp/autopkgtest.07OKO9/build.v12/src/examples/cookbook/scenes2movie.pml 167s Run 'pymol -c /tmp/autopkgtest.07OKO9/build.v12/src/examples/cookbook/seq_match_sele.pml'... 168s Skip /tmp/autopkgtest.07OKO9/build.v12/src/examples/cookbook/ss_xfer.pml 168s Run 'pymol -c /tmp/autopkgtest.07OKO9/build.v12/src/examples/cookbook/symsph.py'... 169s Run 'pymol -c /tmp/autopkgtest.07OKO9/build.v12/src/examples/devel/brick01.py'... 169s Run 'pymol -c /tmp/autopkgtest.07OKO9/build.v12/src/examples/devel/cgo01.py'... 169s Run 'pymol -c /tmp/autopkgtest.07OKO9/build.v12/src/examples/devel/cgo02.py'... 172s Run 'pymol -c /tmp/autopkgtest.07OKO9/build.v12/src/examples/devel/cgo03.py'... 175s Run 'pymol -c /tmp/autopkgtest.07OKO9/build.v12/src/examples/devel/cgo04.py'... 176s Run 'pymol -c /tmp/autopkgtest.07OKO9/build.v12/src/examples/devel/cgo05.py'... 176s Run 'pymol -c /tmp/autopkgtest.07OKO9/build.v12/src/examples/devel/cgo06.py'... 177s Run 'pymol -c /tmp/autopkgtest.07OKO9/build.v12/src/examples/devel/cgo07.py'... 177s Run 'pymol -c /tmp/autopkgtest.07OKO9/build.v12/src/examples/devel/cgo08.py'... 177s Run 'pymol -c /tmp/autopkgtest.07OKO9/build.v12/src/examples/devel/cgo_3Dtext01.py'... 178s Run 'pymol -c /tmp/autopkgtest.07OKO9/build.v12/src/examples/devel/cgo_axes.py'... 178s Run 'pymol -c /tmp/autopkgtest.07OKO9/build.v12/src/examples/devel/cgo_label_hack.py'... 181s Run 'pymol -c /tmp/autopkgtest.07OKO9/build.v12/src/examples/devel/cgo_plane.py'... 181s Run 'pymol -c /tmp/autopkgtest.07OKO9/build.v12/src/examples/devel/chempy_model01.py'... 181s Run 'pymol -c /tmp/autopkgtest.07OKO9/build.v12/src/examples/devel/chempy_model02.py'... 181s Run 'pymol -c /tmp/autopkgtest.07OKO9/build.v12/src/examples/devel/chempy_model03.py'... 185s Run 'pymol -c /tmp/autopkgtest.07OKO9/build.v12/src/examples/devel/click_ordered_list.py'... 185s Run 'pymol -c /tmp/autopkgtest.07OKO9/build.v12/src/examples/devel/count_molecules.py'... 185s Run 'pymol -c /tmp/autopkgtest.07OKO9/build.v12/src/examples/devel/extend_demo01.py'... 185s Run 'pymol -c /tmp/autopkgtest.07OKO9/build.v12/src/examples/devel/gl01.py'... 185s Run 'pymol -c /tmp/autopkgtest.07OKO9/build.v12/src/examples/devel/gl02.py'... 186s Run 'pymol -c /tmp/autopkgtest.07OKO9/build.v12/src/examples/devel/gl03.py'... 189s Skip /tmp/autopkgtest.07OKO9/build.v12/src/examples/devel/importing.py 189s Run 'pymol -c /tmp/autopkgtest.07OKO9/build.v12/src/examples/devel/link_demo.py'... 189s Run 'pymol -c /tmp/autopkgtest.07OKO9/build.v12/src/examples/devel/membrane.py'... 190s Run 'pymol -c /tmp/autopkgtest.07OKO9/build.v12/src/examples/devel/mutate01.pml'... 190s Run 'pymol -c /tmp/autopkgtest.07OKO9/build.v12/src/examples/devel/mutate02.py'... 192s Run 'pymol -c /tmp/autopkgtest.07OKO9/build.v12/src/examples/devel/my_ext_gui.py'... 192s Run 'pymol -c /tmp/autopkgtest.07OKO9/build.v12/src/examples/devel/particle01.py'... 192s Run 'pymol -c /tmp/autopkgtest.07OKO9/build.v12/src/examples/devel/particle02.py'... 193s Run 'pymol -c /tmp/autopkgtest.07OKO9/build.v12/src/examples/devel/pick_wiz.py'... 193s Skip /tmp/autopkgtest.07OKO9/build.v12/src/examples/devel/povray01.py 193s Run 'pymol -c /tmp/autopkgtest.07OKO9/build.v12/src/examples/devel/scenes_to_movie01.pml'... 193s Skip /tmp/autopkgtest.07OKO9/build.v12/src/examples/devel/sd_annotate.pml 193s Run 'pymol -c /tmp/autopkgtest.07OKO9/build.v12/src/examples/devel/sele_wiz.py'... 193s Skip /tmp/autopkgtest.07OKO9/build.v12/src/examples/devel/start_pymol.py 193s Run 'pymol -c /tmp/autopkgtest.07OKO9/build.v12/src/examples/devel/syncmol.py'... 193s Skip /tmp/autopkgtest.07OKO9/build.v12/src/examples/devel/tkwindow.py 193s Run 'pymol -c /tmp/autopkgtest.07OKO9/build.v12/src/examples/devel/webgui01.py'... 194s  PyMOL(TM) Molecular Graphics System, Version 3.0.0. 194s Copyright (c) Schrodinger, LLC. 194s All Rights Reserved. 194s 194s Created by Warren L. DeLano, Ph.D. 194s 194s PyMOL is user-supported open-source software. Although some versions 194s are freely available, PyMOL is not in the public domain. 194s 194s If PyMOL is helpful in your work or study, then please volunteer 194s support for our ongoing efforts to create open and affordable scientific 194s software by purchasing a PyMOL Maintenance and/or Support subscription. 194s 194s More information can be found at "http://www.pymol.org". 194s 194s Enter "help" for a list of commands. 194s Enter "help " for information on a specific command. 194s 194s Hit ESC anytime to toggle between text and graphics. 194s 194s Detected 2 CPU cores. Enabled multithreaded rendering. 194s Traceback (most recent call last): 194s File "/usr/lib/python3/dist-packages/pymol/parsing.py", line 470, in run 194s run_(path, ns_pymol, ns_pymol) 194s ~~~~^^^^^^^^^^^^^^^^^^^^^^^^^^ 194s File "/usr/lib/python3/dist-packages/pymol/parsing.py", line 519, in run_file 194s execfile(file,global_ns,local_ns) 194s ~~~~~~~~^^^^^^^^^^^^^^^^^^^^^^^^^ 194s File "/usr/lib/python3/dist-packages/pymol/parsing.py", line 514, in execfile 194s exec(co, global_ns, local_ns) 194s ~~~~^^^^^^^^^^^^^^^^^^^^^^^^^ 194s File "/tmp/autopkgtest.07OKO9/build.v12/src/examples/devel/webgui01.py", line 7, in 194s import cgi 194s ModuleNotFoundError: No module named 'cgi' 194s  not ok - error-related patterns were found in pymol output 194s Run 'pymol -c /tmp/autopkgtest.07OKO9/build.v12/src/examples/devel/webgui02.py'... 194s /tmp/autopkgtest.07OKO9/build.v12/src/examples/devel/webgui02.py:161: SyntaxWarning: invalid escape sequence '\=' 194s mo = re.search("molid\=([A-Z0-9]+)",self.path) 194s  PyMOL(TM) Molecular Graphics System, Version 3.0.0. 194s Copyright (c) Schrodinger, LLC. 194s All Rights Reserved. 194s 194s Created by Warren L. DeLano, Ph.D. 194s 194s PyMOL is user-supported open-source software. Although some versions 194s are freely available, PyMOL is not in the public domain. 194s 194s If PyMOL is helpful in your work or study, then please volunteer 194s support for our ongoing efforts to create open and affordable scientific 194s software by purchasing a PyMOL Maintenance and/or Support subscription. 194s 194s More information can be found at "http://www.pymol.org". 194s 194s Enter "help" for a list of commands. 194s Enter "help " for information on a specific command. 194s 194s Hit ESC anytime to toggle between text and graphics. 194s 194s Detected 2 CPU cores. Enabled multithreaded rendering. 194s Traceback (most recent call last): 194s File "/usr/lib/python3/dist-packages/pymol/parsing.py", line 470, in run 194s run_(path, ns_pymol, ns_pymol) 194s ~~~~^^^^^^^^^^^^^^^^^^^^^^^^^^ 194s File "/usr/lib/python3/dist-packages/pymol/parsing.py", line 519, in run_file 194s execfile(file,global_ns,local_ns) 194s ~~~~~~~~^^^^^^^^^^^^^^^^^^^^^^^^^ 194s File "/usr/lib/python3/dist-packages/pymol/parsing.py", line 514, in execfile 194s exec(co, global_ns, local_ns) 194s ~~~~^^^^^^^^^^^^^^^^^^^^^^^^^ 194s File "/tmp/autopkgtest.07OKO9/build.v12/src/examples/devel/webgui02.py", line 10, in 194s import cgi 194s ModuleNotFoundError: No module named 'cgi' 194s  not ok - error-related patterns were found in pymol output 194s Skip /tmp/autopkgtest.07OKO9/build.v12/src/examples/devel/xmlrpc01.py 194s Run 'pymol -c /tmp/autopkgtest.07OKO9/build.v12/src/examples/devel/xmlrpc02.py'... 194s /tmp/autopkgtest.07OKO9/build.v12/src/examples/devel/webgui02.py:161: SyntaxWarning: invalid escape sequence '\=' 194s mo = re.search("molid\=([A-Z0-9]+)",self.path) 194s Run 'pymol -c /tmp/autopkgtest.07OKO9/build.v12/src/examples/launching/launch_demo.py'... 194s Run 'pymol -c /tmp/autopkgtest.07OKO9/build.v12/src/examples/launching/launch_viewer1.py'... 194s Run 'pymol -c /tmp/autopkgtest.07OKO9/build.v12/src/examples/launching/launch_viewer2.py'... 195s Processing new directory /tmp/autopkgtest.07OKO9/build.v12/src/examples/chempy 195s Run 'pymol -c /tmp/autopkgtest.07OKO9/build.v12/src/examples/chempy/generate_amber.py'... 195s Run 'pymol -c /tmp/autopkgtest.07OKO9/build.v12/src/examples/chempy/generate_mmff.py'... 195s Processing new directory /tmp/autopkgtest.07OKO9/build.v12/src/examples/cookbook 195s Run 'pymol -c /tmp/autopkgtest.07OKO9/build.v12/src/examples/cookbook/area_diff.pml'... 196s Run 'pymol -c /tmp/autopkgtest.07OKO9/build.v12/src/examples/cookbook/build_peptide.py'... 196s Skip /tmp/autopkgtest.07OKO9/build.v12/src/examples/cookbook/contact.pml 196s Skip /tmp/autopkgtest.07OKO9/build.v12/src/examples/cookbook/dali.py 196s Skip /tmp/autopkgtest.07OKO9/build.v12/src/examples/cookbook/density.pml 196s Skip /tmp/autopkgtest.07OKO9/build.v12/src/examples/cookbook/groel_es.pml 196s Skip /tmp/autopkgtest.07OKO9/build.v12/src/examples/cookbook/multiclip_ray.pml 196s Skip /tmp/autopkgtest.07OKO9/build.v12/src/examples/cookbook/packing.pml 196s Skip /tmp/autopkgtest.07OKO9/build.v12/src/examples/cookbook/packsurf.pml 196s Skip /tmp/autopkgtest.07OKO9/build.v12/src/examples/cookbook/ref_frame.pml 196s Skip /tmp/autopkgtest.07OKO9/build.v12/src/examples/cookbook/ribosome.pml 196s Skip /tmp/autopkgtest.07OKO9/build.v12/src/examples/cookbook/scenes2movie.pml 196s Run 'pymol -c /tmp/autopkgtest.07OKO9/build.v12/src/examples/cookbook/seq_match_sele.pml'... 198s Skip /tmp/autopkgtest.07OKO9/build.v12/src/examples/cookbook/ss_xfer.pml 198s Run 'pymol -c /tmp/autopkgtest.07OKO9/build.v12/src/examples/cookbook/symsph.py'... 198s Processing new directory /tmp/autopkgtest.07OKO9/build.v12/src/examples/devel 198s Run 'pymol -c /tmp/autopkgtest.07OKO9/build.v12/src/examples/devel/brick01.py'... 198s Run 'pymol -c /tmp/autopkgtest.07OKO9/build.v12/src/examples/devel/cgo01.py'... 198s Run 'pymol -c /tmp/autopkgtest.07OKO9/build.v12/src/examples/devel/cgo02.py'... 201s Run 'pymol -c /tmp/autopkgtest.07OKO9/build.v12/src/examples/devel/cgo03.py'... 205s Run 'pymol -c /tmp/autopkgtest.07OKO9/build.v12/src/examples/devel/cgo04.py'... 205s Run 'pymol -c /tmp/autopkgtest.07OKO9/build.v12/src/examples/devel/cgo05.py'... 205s Run 'pymol -c /tmp/autopkgtest.07OKO9/build.v12/src/examples/devel/cgo06.py'... 206s Run 'pymol -c /tmp/autopkgtest.07OKO9/build.v12/src/examples/devel/cgo07.py'... 206s Run 'pymol -c /tmp/autopkgtest.07OKO9/build.v12/src/examples/devel/cgo08.py'... 206s Run 'pymol -c /tmp/autopkgtest.07OKO9/build.v12/src/examples/devel/cgo_3Dtext01.py'... 207s Run 'pymol -c /tmp/autopkgtest.07OKO9/build.v12/src/examples/devel/cgo_axes.py'... 207s Run 'pymol -c /tmp/autopkgtest.07OKO9/build.v12/src/examples/devel/cgo_label_hack.py'... 210s Run 'pymol -c /tmp/autopkgtest.07OKO9/build.v12/src/examples/devel/cgo_plane.py'... 210s Run 'pymol -c /tmp/autopkgtest.07OKO9/build.v12/src/examples/devel/chempy_model01.py'... 210s Run 'pymol -c /tmp/autopkgtest.07OKO9/build.v12/src/examples/devel/chempy_model02.py'... 210s Run 'pymol -c /tmp/autopkgtest.07OKO9/build.v12/src/examples/devel/chempy_model03.py'... 214s Run 'pymol -c /tmp/autopkgtest.07OKO9/build.v12/src/examples/devel/click_ordered_list.py'... 214s Run 'pymol -c /tmp/autopkgtest.07OKO9/build.v12/src/examples/devel/count_molecules.py'... 214s Run 'pymol -c /tmp/autopkgtest.07OKO9/build.v12/src/examples/devel/extend_demo01.py'... 214s Run 'pymol -c /tmp/autopkgtest.07OKO9/build.v12/src/examples/devel/gl01.py'... 215s Run 'pymol -c /tmp/autopkgtest.07OKO9/build.v12/src/examples/devel/gl02.py'... 215s Run 'pymol -c /tmp/autopkgtest.07OKO9/build.v12/src/examples/devel/gl03.py'... 218s Skip /tmp/autopkgtest.07OKO9/build.v12/src/examples/devel/importing.py 218s Run 'pymol -c /tmp/autopkgtest.07OKO9/build.v12/src/examples/devel/link_demo.py'... 218s Run 'pymol -c /tmp/autopkgtest.07OKO9/build.v12/src/examples/devel/membrane.py'... 219s Run 'pymol -c /tmp/autopkgtest.07OKO9/build.v12/src/examples/devel/mutate01.pml'... 219s Run 'pymol -c /tmp/autopkgtest.07OKO9/build.v12/src/examples/devel/mutate02.py'... 221s Run 'pymol -c /tmp/autopkgtest.07OKO9/build.v12/src/examples/devel/my_ext_gui.py'... 221s Run 'pymol -c /tmp/autopkgtest.07OKO9/build.v12/src/examples/devel/particle01.py'... 221s Run 'pymol -c /tmp/autopkgtest.07OKO9/build.v12/src/examples/devel/particle02.py'... 222s Run 'pymol -c /tmp/autopkgtest.07OKO9/build.v12/src/examples/devel/pick_wiz.py'... 222s Skip /tmp/autopkgtest.07OKO9/build.v12/src/examples/devel/povray01.py 222s Run 'pymol -c /tmp/autopkgtest.07OKO9/build.v12/src/examples/devel/scenes_to_movie01.pml'... 222s Skip /tmp/autopkgtest.07OKO9/build.v12/src/examples/devel/sd_annotate.pml 222s Run 'pymol -c /tmp/autopkgtest.07OKO9/build.v12/src/examples/devel/sele_wiz.py'... 222s Skip /tmp/autopkgtest.07OKO9/build.v12/src/examples/devel/start_pymol.py 222s Run 'pymol -c /tmp/autopkgtest.07OKO9/build.v12/src/examples/devel/syncmol.py'... 222s Skip /tmp/autopkgtest.07OKO9/build.v12/src/examples/devel/tkwindow.py 222s Run 'pymol -c /tmp/autopkgtest.07OKO9/build.v12/src/examples/devel/webgui01.py'... 223s  PyMOL(TM) Molecular Graphics System, Version 3.0.0. 223s Copyright (c) Schrodinger, LLC. 223s All Rights Reserved. 223s 223s Created by Warren L. DeLano, Ph.D. 223s 223s PyMOL is user-supported open-source software. Although some versions 223s are freely available, PyMOL is not in the public domain. 223s 223s If PyMOL is helpful in your work or study, then please volunteer 223s support for our ongoing efforts to create open and affordable scientific 223s software by purchasing a PyMOL Maintenance and/or Support subscription. 223s 223s More information can be found at "http://www.pymol.org". 223s 223s Enter "help" for a list of commands. 223s Enter "help " for information on a specific command. 223s 223s Hit ESC anytime to toggle between text and graphics. 223s 223s Detected 2 CPU cores. Enabled multithreaded rendering. 223s Traceback (most recent call last): 223s File "/usr/lib/python3/dist-packages/pymol/parsing.py", line 470, in run 223s run_(path, ns_pymol, ns_pymol) 223s ~~~~^^^^^^^^^^^^^^^^^^^^^^^^^^ 223s File "/usr/lib/python3/dist-packages/pymol/parsing.py", line 519, in run_file 223s execfile(file,global_ns,local_ns) 223s ~~~~~~~~^^^^^^^^^^^^^^^^^^^^^^^^^ 223s File "/usr/lib/python3/dist-packages/pymol/parsing.py", line 514, in execfile 223s exec(co, global_ns, local_ns) 223s ~~~~^^^^^^^^^^^^^^^^^^^^^^^^^ 223s File "/tmp/autopkgtest.07OKO9/build.v12/src/examples/devel/webgui01.py", line 7, in 223s import cgi 223s ModuleNotFoundError: No module named 'cgi' 223s  not ok - error-related patterns were found in pymol output 223s Run 'pymol -c /tmp/autopkgtest.07OKO9/build.v12/src/examples/devel/webgui02.py'... 223s /tmp/autopkgtest.07OKO9/build.v12/src/examples/devel/webgui02.py:161: SyntaxWarning: invalid escape sequence '\=' 223s mo = re.search("molid\=([A-Z0-9]+)",self.path) 223s  PyMOL(TM) Molecular Graphics System, Version 3.0.0. 223s Copyright (c) Schrodinger, LLC. 223s All Rights Reserved. 223s 223s Created by Warren L. DeLano, Ph.D. 223s 223s PyMOL is user-supported open-source software. Although some versions 223s are freely available, PyMOL is not in the public domain. 223s 223s If PyMOL is helpful in your work or study, then please volunteer 223s support for our ongoing efforts to create open and affordable scientific 223s software by purchasing a PyMOL Maintenance and/or Support subscription. 223s 223s More information can be found at "http://www.pymol.org". 223s 223s Enter "help" for a list of commands. 223s Enter "help " for information on a specific command. 223s 223s Hit ESC anytime to toggle between text and graphics. 223s 223s Detected 2 CPU cores. Enabled multithreaded rendering. 223s Traceback (most recent call last): 223s File "/usr/lib/python3/dist-packages/pymol/parsing.py", line 470, in run 223s run_(path, ns_pymol, ns_pymol) 223s ~~~~^^^^^^^^^^^^^^^^^^^^^^^^^^ 223s File "/usr/lib/python3/dist-packages/pymol/parsing.py", line 519, in run_file 223s execfile(file,global_ns,local_ns) 223s ~~~~~~~~^^^^^^^^^^^^^^^^^^^^^^^^^ 223s File "/usr/lib/python3/dist-packages/pymol/parsing.py", line 514, in execfile 223s exec(co, global_ns, local_ns) 223s ~~~~^^^^^^^^^^^^^^^^^^^^^^^^^ 223s File "/tmp/autopkgtest.07OKO9/build.v12/src/examples/devel/webgui02.py", line 10, in 223s import cgi 223s ModuleNotFoundError: No module named 'cgi' 223s  not ok - error-related patterns were found in pymol output 223s Skip /tmp/autopkgtest.07OKO9/build.v12/src/examples/devel/xmlrpc01.py 223s Run 'pymol -c /tmp/autopkgtest.07OKO9/build.v12/src/examples/devel/xmlrpc02.py'... 223s /tmp/autopkgtest.07OKO9/build.v12/src/examples/devel/webgui02.py:161: SyntaxWarning: invalid escape sequence '\=' 223s mo = re.search("molid\=([A-Z0-9]+)",self.path) 223s Processing new directory /tmp/autopkgtest.07OKO9/build.v12/src/examples/launching 223s Run 'pymol -c /tmp/autopkgtest.07OKO9/build.v12/src/examples/launching/launch_demo.py'... 223s Run 'pymol -c /tmp/autopkgtest.07OKO9/build.v12/src/examples/launching/launch_viewer1.py'... 223s Run 'pymol -c /tmp/autopkgtest.07OKO9/build.v12/src/examples/launching/launch_viewer2.py'... 224s autopkgtest [23:34:27]: test command1: -----------------------] 224s autopkgtest [23:34:27]: test command1: - - - - - - - - - - results - - - - - - - - - - 224s command1 PASS (superficial) 225s autopkgtest [23:34:28]: test command2: preparing testbed 225s Reading package lists... 225s Building dependency tree... 225s Reading state information... 225s Starting pkgProblemResolver with broken count: 0 225s Starting 2 pkgProblemResolver with broken count: 0 225s Done 226s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 226s autopkgtest [23:34:29]: test command2: sh debian/tests/call-pymol-scripts data/demo 226s autopkgtest [23:34:29]: test command2: [----------------------- 227s Search pymol scripts in /tmp/autopkgtest.07OKO9/build.v12/src/data/demo... 227s Processing new directory /tmp/autopkgtest.07OKO9/build.v12/src/data/demo 227s Run 'pymol -c /tmp/autopkgtest.07OKO9/build.v12/src/data/demo/cgo03.py'... 230s autopkgtest [23:34:33]: test command2: -----------------------] 231s command2 PASS (superficial) 231s autopkgtest [23:34:34]: test command2: - - - - - - - - - - results - - - - - - - - - - 231s autopkgtest [23:34:34]: test command3: preparing testbed 231s Reading package lists... 231s Building dependency tree... 231s Reading state information... 232s Starting pkgProblemResolver with broken count: 0 232s Starting 2 pkgProblemResolver with broken count: 0 232s Done 232s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 234s autopkgtest [23:34:37]: test command3: sh debian/tests/call-pymol-scripts /usr/share/pymol/examples \ "(cookbook/)|(xmlrpc01)|(sd_annotate)|(povray01)|(tkwindow)|(importing)" 234s autopkgtest [23:34:37]: test command3: [----------------------- 234s Search pymol scripts in /usr/share/pymol/examples... 234s Processing new directory /usr/share/pymol/examples 234s Run 'pymol -c /usr/share/pymol/examples/chempy/generate_amber.py'... 234s Run 'pymol -c /usr/share/pymol/examples/chempy/generate_mmff.py'... 234s Skip /usr/share/pymol/examples/cookbook/area_diff.pml 234s Skip /usr/share/pymol/examples/cookbook/contact.pml 234s Skip /usr/share/pymol/examples/cookbook/multiclip_ray.pml 234s Skip /usr/share/pymol/examples/cookbook/packing.pml 234s Skip /usr/share/pymol/examples/cookbook/packsurf.pml 234s Skip /usr/share/pymol/examples/cookbook/ref_frame.pml 234s Skip /usr/share/pymol/examples/cookbook/scenes2movie.pml 234s Skip /usr/share/pymol/examples/cookbook/seq_match_sele.pml 234s Skip /usr/share/pymol/examples/cookbook/ss_xfer.pml 234s Run 'pymol -c /usr/share/pymol/examples/devel/brick01.py'... 234s Run 'pymol -c /usr/share/pymol/examples/devel/cgo01.py'... 235s Run 'pymol -c /usr/share/pymol/examples/devel/cgo02.py'... 238s Run 'pymol -c /usr/share/pymol/examples/devel/cgo03.py'... 241s Run 'pymol -c /usr/share/pymol/examples/devel/cgo04.py'... 241s Run 'pymol -c /usr/share/pymol/examples/devel/cgo05.py'... 241s Run 'pymol -c /usr/share/pymol/examples/devel/cgo06.py'... 243s Run 'pymol -c /usr/share/pymol/examples/devel/cgo07.py'... 243s Run 'pymol -c /usr/share/pymol/examples/devel/cgo08.py'... 243s Run 'pymol -c /usr/share/pymol/examples/devel/cgo_3Dtext01.py'... 243s Run 'pymol -c /usr/share/pymol/examples/devel/cgo_axes.py'... 243s Run 'pymol -c /usr/share/pymol/examples/devel/cgo_label_hack.py'... 247s Run 'pymol -c /usr/share/pymol/examples/devel/cgo_plane.py'... 247s Run 'pymol -c /usr/share/pymol/examples/devel/chempy_model01.py'... 247s Run 'pymol -c /usr/share/pymol/examples/devel/chempy_model02.py'... 247s Run 'pymol -c /usr/share/pymol/examples/devel/chempy_model03.py'... 250s Run 'pymol -c /usr/share/pymol/examples/devel/click_ordered_list.py'... 250s Run 'pymol -c /usr/share/pymol/examples/devel/count_molecules.py'... 251s Run 'pymol -c /usr/share/pymol/examples/devel/extend_demo01.py'... 251s Run 'pymol -c /usr/share/pymol/examples/devel/gl01.py'... 251s Run 'pymol -c /usr/share/pymol/examples/devel/gl02.py'... 251s Run 'pymol -c /usr/share/pymol/examples/devel/gl03.py'... 255s Skip /usr/share/pymol/examples/devel/importing.py 255s Run 'pymol -c /usr/share/pymol/examples/devel/link_demo.py'... 255s Run 'pymol -c /usr/share/pymol/examples/devel/membrane.py'... 255s Run 'pymol -c /usr/share/pymol/examples/devel/mutate01.pml'... 256s Run 'pymol -c /usr/share/pymol/examples/devel/mutate02.py'... 257s Run 'pymol -c /usr/share/pymol/examples/devel/my_ext_gui.py'... 258s Run 'pymol -c /usr/share/pymol/examples/devel/particle01.py'... 258s Run 'pymol -c /usr/share/pymol/examples/devel/particle02.py'... 258s Run 'pymol -c /usr/share/pymol/examples/devel/pick_wiz.py'... 259s Run 'pymol -c /usr/share/pymol/examples/devel/scenes_to_movie01.pml'... 259s Skip /usr/share/pymol/examples/devel/sd_annotate.pml 259s Run 'pymol -c /usr/share/pymol/examples/devel/sele_wiz.py'... 259s Run 'pymol -c /usr/share/pymol/examples/devel/syncmol.py'... 259s Skip /usr/share/pymol/examples/devel/tkwindow.py 259s Run 'pymol -c /usr/share/pymol/examples/devel/webgui01.py'... 259s  PyMOL(TM) Molecular Graphics System, Version 3.0.0. 259s Copyright (c) Schrodinger, LLC. 259s All Rights Reserved. 259s 259s Created by Warren L. DeLano, Ph.D. 259s 259s PyMOL is user-supported open-source software. Although some versions 259s are freely available, PyMOL is not in the public domain. 259s 259s If PyMOL is helpful in your work or study, then please volunteer 259s support for our ongoing efforts to create open and affordable scientific 259s software by purchasing a PyMOL Maintenance and/or Support subscription. 259s 259s More information can be found at "http://www.pymol.org". 259s 259s Enter "help" for a list of commands. 259s Enter "help " for information on a specific command. 259s 259s Hit ESC anytime to toggle between text and graphics. 259s 259s Detected 2 CPU cores. Enabled multithreaded rendering. 259s Traceback (most recent call last): 259s File "/usr/lib/python3/dist-packages/pymol/parsing.py", line 470, in run 259s run_(path, ns_pymol, ns_pymol) 259s ~~~~^^^^^^^^^^^^^^^^^^^^^^^^^^ 259s File "/usr/lib/python3/dist-packages/pymol/parsing.py", line 519, in run_file 259s execfile(file,global_ns,local_ns) 259s ~~~~~~~~^^^^^^^^^^^^^^^^^^^^^^^^^ 259s File "/usr/lib/python3/dist-packages/pymol/parsing.py", line 514, in execfile 259s exec(co, global_ns, local_ns) 259s ~~~~^^^^^^^^^^^^^^^^^^^^^^^^^ 259s File "/usr/share/pymol/examples/devel/webgui01.py", line 7, in 259s import cgi 259s ModuleNotFoundError: No module named 'cgi' 259s  not ok - error-related patterns were found in pymol output 259s Run 'pymol -c /usr/share/pymol/examples/devel/webgui02.py'... 259s /usr/share/pymol/examples/devel/webgui02.py:161: SyntaxWarning: invalid escape sequence '\=' 259s mo = re.search("molid\=([A-Z0-9]+)",self.path) 260s  PyMOL(TM) Molecular Graphics System, Version 3.0.0. 260s Copyright (c) Schrodinger, LLC. 260s All Rights Reserved. 260s 260s Created by Warren L. DeLano, Ph.D. 260s 260s PyMOL is user-supported open-source software. Although some versions 260s are freely available, PyMOL is not in the public domain. 260s 260s If PyMOL is helpful in your work or study, then please volunteer 260s support for our ongoing efforts to create open and affordable scientific 260s software by purchasing a PyMOL Maintenance and/or Support subscription. 260s 260s More information can be found at "http://www.pymol.org". 260s 260s Enter "help" for a list of commands. 260s Enter "help " for information on a specific command. 260s 260s Hit ESC anytime to toggle between text and graphics. 260s 260s /usr/share/pymol/examples/devel/webgui02.py:161: SyntaxWarning: invalid escape sequence '\=' 260s mo = re.search("molid\=([A-Z0-9]+)",self.path) 260s Detected 2 CPU cores. Enabled multithreaded rendering. 260s Traceback (most recent call last): 260s File "/usr/lib/python3/dist-packages/pymol/parsing.py", line 470, in run 260s run_(path, ns_pymol, ns_pymol) 260s ~~~~^^^^^^^^^^^^^^^^^^^^^^^^^^ 260s File "/usr/lib/python3/dist-packages/pymol/parsing.py", line 519, in run_file 260s execfile(file,global_ns,local_ns) 260s ~~~~~~~~^^^^^^^^^^^^^^^^^^^^^^^^^ 260s File "/usr/lib/python3/dist-packages/pymol/parsing.py", line 514, in execfile 260s exec(co, global_ns, local_ns) 260s ~~~~^^^^^^^^^^^^^^^^^^^^^^^^^ 260s File "/usr/share/pymol/examples/devel/webgui02.py", line 10, in 260s import cgi 260s ModuleNotFoundError: No module named 'cgi' 260s  not ok - error-related patterns were found in pymol output 260s Skip /usr/share/pymol/examples/devel/xmlrpc01.py 260s Run 'pymol -c /usr/share/pymol/examples/devel/xmlrpc02.py'... 260s Run 'pymol -c /usr/share/pymol/examples/launching/launch_demo.py'... 260s Run 'pymol -c /usr/share/pymol/examples/launching/launch_viewer1.py'... 260s Run 'pymol -c /usr/share/pymol/examples/launching/launch_viewer2.py'... 260s Processing new directory /usr/share/pymol/examples/chempy 260s Run 'pymol -c /usr/share/pymol/examples/chempy/generate_amber.py'... 261s Run 'pymol -c /usr/share/pymol/examples/chempy/generate_mmff.py'... 261s Processing new directory /usr/share/pymol/examples/cookbook 261s Skip /usr/share/pymol/examples/cookbook/area_diff.pml 261s Skip /usr/share/pymol/examples/cookbook/contact.pml 261s Skip /usr/share/pymol/examples/cookbook/multiclip_ray.pml 261s Skip /usr/share/pymol/examples/cookbook/packing.pml 261s Skip /usr/share/pymol/examples/cookbook/packsurf.pml 261s Skip /usr/share/pymol/examples/cookbook/ref_frame.pml 261s Skip /usr/share/pymol/examples/cookbook/scenes2movie.pml 261s Skip /usr/share/pymol/examples/cookbook/seq_match_sele.pml 261s Skip /usr/share/pymol/examples/cookbook/ss_xfer.pml 261s Processing new directory /usr/share/pymol/examples/devel 261s Run 'pymol -c /usr/share/pymol/examples/devel/brick01.py'... 261s Run 'pymol -c /usr/share/pymol/examples/devel/cgo01.py'... 261s Run 'pymol -c /usr/share/pymol/examples/devel/cgo02.py'... 264s Run 'pymol -c /usr/share/pymol/examples/devel/cgo03.py'... 268s Run 'pymol -c /usr/share/pymol/examples/devel/cgo04.py'... 268s Run 'pymol -c /usr/share/pymol/examples/devel/cgo05.py'... 268s Run 'pymol -c /usr/share/pymol/examples/devel/cgo06.py'... 269s Run 'pymol -c /usr/share/pymol/examples/devel/cgo07.py'... 269s Run 'pymol -c /usr/share/pymol/examples/devel/cgo08.py'... 269s Run 'pymol -c /usr/share/pymol/examples/devel/cgo_3Dtext01.py'... 270s Run 'pymol -c /usr/share/pymol/examples/devel/cgo_axes.py'... 270s Run 'pymol -c /usr/share/pymol/examples/devel/cgo_label_hack.py'... 273s Run 'pymol -c /usr/share/pymol/examples/devel/cgo_plane.py'... 273s Run 'pymol -c /usr/share/pymol/examples/devel/chempy_model01.py'... 273s Run 'pymol -c /usr/share/pymol/examples/devel/chempy_model02.py'... 273s Run 'pymol -c /usr/share/pymol/examples/devel/chempy_model03.py'... 277s Run 'pymol -c /usr/share/pymol/examples/devel/click_ordered_list.py'... 277s Run 'pymol -c /usr/share/pymol/examples/devel/count_molecules.py'... 277s Run 'pymol -c /usr/share/pymol/examples/devel/extend_demo01.py'... 277s Run 'pymol -c /usr/share/pymol/examples/devel/gl01.py'... 278s Run 'pymol -c /usr/share/pymol/examples/devel/gl02.py'... 278s Run 'pymol -c /usr/share/pymol/examples/devel/gl03.py'... 281s Skip /usr/share/pymol/examples/devel/importing.py 281s Run 'pymol -c /usr/share/pymol/examples/devel/link_demo.py'... 281s Run 'pymol -c /usr/share/pymol/examples/devel/membrane.py'... 282s Run 'pymol -c /usr/share/pymol/examples/devel/mutate01.pml'... 282s Run 'pymol -c /usr/share/pymol/examples/devel/mutate02.py'... 284s Run 'pymol -c /usr/share/pymol/examples/devel/my_ext_gui.py'... 284s Run 'pymol -c /usr/share/pymol/examples/devel/particle01.py'... 284s Run 'pymol -c /usr/share/pymol/examples/devel/particle02.py'... 285s Run 'pymol -c /usr/share/pymol/examples/devel/pick_wiz.py'... 285s Run 'pymol -c /usr/share/pymol/examples/devel/scenes_to_movie01.pml'... 285s Skip /usr/share/pymol/examples/devel/sd_annotate.pml 285s Run 'pymol -c /usr/share/pymol/examples/devel/sele_wiz.py'... 285s Run 'pymol -c /usr/share/pymol/examples/devel/syncmol.py'... 285s Skip /usr/share/pymol/examples/devel/tkwindow.py 285s Run 'pymol -c /usr/share/pymol/examples/devel/webgui01.py'... 286s  PyMOL(TM) Molecular Graphics System, Version 3.0.0. 286s Copyright (c) Schrodinger, LLC. 286s All Rights Reserved. 286s 286s Created by Warren L. DeLano, Ph.D. 286s 286s PyMOL is user-supported open-source software. Although some versions 286s are freely available, PyMOL is not in the public domain. 286s 286s If PyMOL is helpful in your work or study, then please volunteer 286s support for our ongoing efforts to create open and affordable scientific 286s software by purchasing a PyMOL Maintenance and/or Support subscription. 286s 286s More information can be found at "http://www.pymol.org". 286s 286s Enter "help" for a list of commands. 286s Enter "help " for information on a specific command. 286s 286s Hit ESC anytime to toggle between text and graphics. 286s 286s Detected 2 CPU cores. Enabled multithreaded rendering. 286s Traceback (most recent call last): 286s File "/usr/lib/python3/dist-packages/pymol/parsing.py", line 470, in run 286s run_(path, ns_pymol, ns_pymol) 286s ~~~~^^^^^^^^^^^^^^^^^^^^^^^^^^ 286s File "/usr/lib/python3/dist-packages/pymol/parsing.py", line 519, in run_file 286s execfile(file,global_ns,local_ns) 286s ~~~~~~~~^^^^^^^^^^^^^^^^^^^^^^^^^ 286s File "/usr/lib/python3/dist-packages/pymol/parsing.py", line 514, in execfile 286s exec(co, global_ns, local_ns) 286s ~~~~^^^^^^^^^^^^^^^^^^^^^^^^^ 286s File "/usr/share/pymol/examples/devel/webgui01.py", line 7, in 286s import cgi 286s ModuleNotFoundError: No module named 'cgi' 286s  not ok - error-related patterns were found in pymol output 286s Run 'pymol -c /usr/share/pymol/examples/devel/webgui02.py'... 286s /usr/share/pymol/examples/devel/webgui02.py:161: SyntaxWarning: invalid escape sequence '\=' 286s mo = re.search("molid\=([A-Z0-9]+)",self.path) 286s  PyMOL(TM) Molecular Graphics System, Version 3.0.0. 286s Copyright (c) Schrodinger, LLC. 286s All Rights Reserved. 286s 286s Created by Warren L. DeLano, Ph.D. 286s 286s PyMOL is user-supported open-source software. Although some versions 286s are freely available, PyMOL is not in the public domain. 286s 286s If PyMOL is helpful in your work or study, then please volunteer 286s support for our ongoing efforts to create open and affordable scientific 286s software by purchasing a PyMOL Maintenance and/or Support subscription. 286s 286s More information can be found at "http://www.pymol.org". 286s 286s Enter "help" for a list of commands. 286s Enter "help " for information on a specific command. 286s 286s Hit ESC anytime to toggle between text and graphics. 286s 286s Detected 2 CPU cores. Enabled multithreaded rendering. 286s Traceback (most recent call last): 286s File "/usr/lib/python3/dist-packages/pymol/parsing.py", line 470, in run 286s run_(path, ns_pymol, ns_pymol) 286s ~~~~^^^^^^^^^^^^^^^^^^^^^^^^^^ 286s File "/usr/lib/python3/dist-packages/pymol/parsing.py", line 519, in run_file 286s execfile(file,global_ns,local_ns) 286s ~~~~~~~~^^^^^^^^^^^^^^^^^^^^^^^^^ 286s File "/usr/lib/python3/dist-packages/pymol/parsing.py", line 514, in execfile 286s exec(co, global_ns, local_ns) 286s ~~~~^^^^^^^^^^^^^^^^^^^^^^^^^ 286s File "/usr/share/pymol/examples/devel/webgui02.py", line 10, in 286s import cgi 286s ModuleNotFoundError: No module named 'cgi' 286s  not ok - error-related patterns were found in pymol output 286s Skip /usr/share/pymol/examples/devel/xmlrpc01.py 286s Run 'pymol -c /usr/share/pymol/examples/devel/xmlrpc02.py'... 286s /usr/share/pymol/examples/devel/webgui02.py:161: SyntaxWarning: invalid escape sequence '\=' 286s mo = re.search("molid\=([A-Z0-9]+)",self.path) 286s Processing new directory /usr/share/pymol/examples/launching 286s Run 'pymol -c /usr/share/pymol/examples/launching/launch_demo.py'... 286s Run 'pymol -c /usr/share/pymol/examples/launching/launch_viewer1.py'... 286s Run 'pymol -c /usr/share/pymol/examples/launching/launch_viewer2.py'... 287s autopkgtest [23:35:30]: test command3: -----------------------] 287s command3 PASS (superficial) 287s autopkgtest [23:35:30]: test command3: - - - - - - - - - - results - - - - - - - - - - 288s autopkgtest [23:35:31]: test command4: preparing testbed 288s Reading package lists... 288s Building dependency tree... 288s Reading state information... 288s Starting pkgProblemResolver with broken count: 0 288s Starting 2 pkgProblemResolver with broken count: 0 288s Done 289s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 289s autopkgtest [23:35:32]: test command4: sh debian/tests/call-pymol-scripts /usr/share/pymol/examples/cookbook multiclip_ray 289s autopkgtest [23:35:32]: test command4: [----------------------- 290s Search pymol scripts in /usr/share/pymol/examples/cookbook... 290s Processing new directory /usr/share/pymol/examples/cookbook 290s Run 'pymol -c /usr/share/pymol/examples/cookbook/area_diff.pml'... 290s Run 'pymol -c /usr/share/pymol/examples/cookbook/contact.pml'... 292s Skip /usr/share/pymol/examples/cookbook/multiclip_ray.pml 292s Run 'pymol -c /usr/share/pymol/examples/cookbook/packing.pml'... 294s Run 'pymol -c /usr/share/pymol/examples/cookbook/packsurf.pml'... 325s Run 'pymol -c /usr/share/pymol/examples/cookbook/ref_frame.pml'... 328s Run 'pymol -c /usr/share/pymol/examples/cookbook/scenes2movie.pml'... 328s Run 'pymol -c /usr/share/pymol/examples/cookbook/seq_match_sele.pml'... 330s Run 'pymol -c /usr/share/pymol/examples/cookbook/ss_xfer.pml'... 331s autopkgtest [23:36:14]: test command4: -----------------------] 331s command4 PASS (superficial) 331s autopkgtest [23:36:14]: test command4: - - - - - - - - - - results - - - - - - - - - - 332s autopkgtest [23:36:15]: test command5: preparing testbed 332s Reading package lists... 332s Building dependency tree... 332s Reading state information... 332s Starting pkgProblemResolver with broken count: 0 332s Starting 2 pkgProblemResolver with broken count: 0 332s Done 333s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 333s autopkgtest [23:36:16]: test command5: (cd /usr/share/pymol/examples/devel/ && pymol -c sd_annotate.pml) 333s autopkgtest [23:36:16]: test command5: [----------------------- 334s PyMOL(TM) Molecular Graphics System, Version 3.0.0. 334s Copyright (c) Schrodinger, LLC. 334s All Rights Reserved. 334s 334s Created by Warren L. DeLano, Ph.D. 334s 334s PyMOL is user-supported open-source software. Although some versions 334s are freely available, PyMOL is not in the public domain. 334s 334s If PyMOL is helpful in your work or study, then please volunteer 334s support for our ongoing efforts to create open and affordable scientific 334s software by purchasing a PyMOL Maintenance and/or Support subscription. 334s 334s More information can be found at "http://www.pymol.org". 334s 334s Enter "help" for a list of commands. 334s Enter "help " for information on a specific command. 334s 334s Hit ESC anytime to toggle between text and graphics. 334s 334s Setting: wizard_prompt_mode set to 3. 334s Detected 2 CPU cores. Enabled multithreaded rendering. 334s PyMOL>from pymol.wizard.annotation import load_annotated_sdf 334s PyMOL>cmd.extend('load_annotated_sdf',load_annotated_sdf) 334s PyMOL>wizard annotation 334s PyMOL>set wizard_prompt_mode,3 334s PyMOL>load_annotated_sdf demo.sdf 334s HBA ['[1, 25, 26, 34]\n'] 334s HBD ['[20]\n'] 334s ACD_NUMBER ['MFCD02681585\n'] 334s SCORE ['-222.044\n'] 334s MOLID ['MFCD02681585\n'] 334s HBA ['[1, 21]\n'] 334s HBD ['[]\n'] 334s ACD_NUMBER ['MFCD01567969\n'] 334s SCORE ['-219.984\n'] 334s MOLID ['MFCD01567969\n'] 334s HBA ['[1, 24]\n'] 334s HBD ['[10, 22]\n'] 334s ACD_NUMBER ['MFCD00023789\n'] 334s SCORE ['-219.911\n'] 334s MOLID ['MFCD00023789\n'] 334s HBA ['[1, 11]\n'] 334s HBD ['[3]\n'] 334s ACD_NUMBER ['MFCD02579443\n'] 334s SCORE ['-219.769\n'] 334s MOLID ['MFCD02579443\n'] 334s HBA ['[1, 11]\n'] 334s HBD ['[9]\n'] 334s ACD_NUMBER ['MFCD02579410\n'] 334s SCORE ['-214.809\n'] 334s MOLID ['MFCD02579410\n'] 334s HBA ['[1, 20, 22, 27, 32]\n'] 334s HBD ['[10, 20]\n'] 334s ACD_NUMBER ['MFCD02579135\n'] 334s SCORE ['-213.630\n'] 334s MOLID ['MFCD02579135\n'] 334s HBA ['[1, 11, 14, 21]\n'] 334s HBD ['[]\n'] 334s ACD_NUMBER ['MFCD02681468\n'] 334s SCORE ['-213.462\n'] 334s MOLID ['MFCD02681468\n'] 334s HBA ['[1, 13, 14, 29]\n'] 334s HBD ['[]\n'] 334s ACD_NUMBER ['MFCD00141070\n'] 334s SCORE ['-213.240\n'] 334s MOLID ['MFCD00141070\n'] 334s HBA ['[1, 8]\n'] 334s HBD ['[]\n'] 334s ACD_NUMBER ['MFCD02983625\n'] 334s SCORE ['-211.422\n'] 334s MOLID ['MFCD02983625\n'] 334s HBA ['[1, 11]\n'] 334s HBD ['[3, 12]\n'] 334s ACD_NUMBER ['MFCD00115818\n'] 334s SCORE ['-210.482\n'] 334s MOLID ['MFCD00115818\n'] 334s autopkgtest [23:36:17]: test command5: -----------------------] 334s command5 PASS (superficial) 334s autopkgtest [23:36:17]: test command5: - - - - - - - - - - results - - - - - - - - - - 335s autopkgtest [23:36:18]: @@@@@@@@@@@@@@@@@@@@ summary 335s command1 PASS (superficial) 335s command2 PASS (superficial) 335s command3 PASS (superficial) 335s command4 PASS (superficial) 335s command5 PASS (superficial) 339s nova [W] Using flock in prodstack6-ppc64el 339s Creating nova instance adt-plucky-ppc64el-pymol-20250103-233043-juju-7f2275-prod-proposed-migration-environment-15-0fdcc454-8df6-4686-8ad3-f786d6ddc7f1 from image adt/ubuntu-plucky-ppc64el-server-20250103.img (UUID f20efbba-1df4-424c-8de8-0f24e2643aa4)... 339s nova [W] Timed out waiting for 4038edb2-9a83-4931-b10d-b4c989223bb4 to get deleted.