0s autopkgtest [06:53:42]: starting date and time: 2025-02-16 06:53:42+0000 0s autopkgtest [06:53:42]: git checkout: 325255d2 Merge branch 'pin-any-arch' into 'ubuntu/production' 0s autopkgtest [06:53:42]: host juju-7f2275-prod-proposed-migration-environment-2; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.efe1tzj6/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:glibc,src:iproute2,src:php-twig,src:postgresql-17,src:postgresql-common,src:roundcube --apt-upgrade parsnp --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 '--env=ADT_TEST_TRIGGERS=glibc/2.41-1ubuntu1 iproute2/6.13.0-1ubuntu1 php-twig/3.19.0-1 postgresql-17/17.3-2 postgresql-common/273 roundcube/1.6.10+dfsg-1' -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest-ppc64el --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-2@bos03-ppc64el-8.secgroup --name adt-plucky-ppc64el-parsnp-20250216-054335-juju-7f2275-prod-proposed-migration-environment-2-37231637-2bf9-4d34-a08b-c666f59f46d4 --image adt/ubuntu-plucky-ppc64el-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-2 --net-id=net_prod-proposed-migration-ppc64el -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,keyserver.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com,radosgw.ps5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/ 104s autopkgtest [06:55:26]: testbed dpkg architecture: ppc64el 104s autopkgtest [06:55:26]: testbed apt version: 2.9.28 105s autopkgtest [06:55:27]: @@@@@@@@@@@@@@@@@@@@ test bed setup 105s autopkgtest [06:55:27]: testbed release detected to be: None 106s autopkgtest [06:55:28]: updating testbed package index (apt update) 106s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease [110 kB] 106s Hit:2 http://ftpmaster.internal/ubuntu plucky InRelease 106s Hit:3 http://ftpmaster.internal/ubuntu plucky-updates InRelease 106s Hit:4 http://ftpmaster.internal/ubuntu plucky-security InRelease 107s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/restricted Sources [3120 B] 107s Get:6 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse Sources [13.1 kB] 107s Get:7 http://ftpmaster.internal/ubuntu plucky-proposed/universe Sources [801 kB] 107s Get:8 http://ftpmaster.internal/ubuntu plucky-proposed/main Sources [72.6 kB] 107s Get:9 http://ftpmaster.internal/ubuntu plucky-proposed/main ppc64el Packages [167 kB] 107s Get:10 http://ftpmaster.internal/ubuntu plucky-proposed/restricted ppc64el Packages [760 B] 107s Get:11 http://ftpmaster.internal/ubuntu plucky-proposed/universe ppc64el Packages [897 kB] 107s Get:12 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse ppc64el Packages [4228 B] 107s Fetched 2068 kB in 1s (1917 kB/s) 108s Reading package lists... 109s Reading package lists... 109s Building dependency tree... 109s Reading state information... 109s Calculating upgrade... 109s The following packages will be upgraded: 109s dash gcc-14-base libatomic1 libgcc-s1 libp11-kit0 libstdc++6 libtasn1-6 109s libxdmcp6 109s 8 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 109s Need to get 1476 kB of archives. 109s After this operation, 15.4 kB of additional disk space will be used. 109s Get:1 http://ftpmaster.internal/ubuntu plucky/main ppc64el dash ppc64el 0.5.12-12ubuntu1 [114 kB] 110s Get:2 http://ftpmaster.internal/ubuntu plucky/main ppc64el libatomic1 ppc64el 14.2.0-17ubuntu1 [10.7 kB] 110s Get:3 http://ftpmaster.internal/ubuntu plucky/main ppc64el gcc-14-base ppc64el 14.2.0-17ubuntu1 [53.6 kB] 110s Get:4 http://ftpmaster.internal/ubuntu plucky/main ppc64el libstdc++6 ppc64el 14.2.0-17ubuntu1 [886 kB] 110s Get:5 http://ftpmaster.internal/ubuntu plucky/main ppc64el libgcc-s1 ppc64el 14.2.0-17ubuntu1 [39.2 kB] 110s Get:6 http://ftpmaster.internal/ubuntu plucky/main ppc64el libp11-kit0 ppc64el 0.25.5-2ubuntu2 [305 kB] 110s Get:7 http://ftpmaster.internal/ubuntu plucky/main ppc64el libtasn1-6 ppc64el 4.20.0-2 [55.9 kB] 110s Get:8 http://ftpmaster.internal/ubuntu plucky/main ppc64el libxdmcp6 ppc64el 1:1.1.5-1 [11.6 kB] 110s Preconfiguring packages ... 110s Fetched 1476 kB in 1s (2369 kB/s) 111s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 106311 files and directories currently installed.) 111s Preparing to unpack .../dash_0.5.12-12ubuntu1_ppc64el.deb ... 111s Unpacking dash (0.5.12-12ubuntu1) over (0.5.12-9ubuntu1) ... 111s Setting up dash (0.5.12-12ubuntu1) ... 111s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 106311 files and directories currently installed.) 111s Preparing to unpack .../libatomic1_14.2.0-17ubuntu1_ppc64el.deb ... 111s Unpacking libatomic1:ppc64el (14.2.0-17ubuntu1) over (14.2.0-16ubuntu1) ... 111s Preparing to unpack .../gcc-14-base_14.2.0-17ubuntu1_ppc64el.deb ... 111s Unpacking gcc-14-base:ppc64el (14.2.0-17ubuntu1) over (14.2.0-16ubuntu1) ... 111s Setting up gcc-14-base:ppc64el (14.2.0-17ubuntu1) ... 111s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 106311 files and directories currently installed.) 111s Preparing to unpack .../libstdc++6_14.2.0-17ubuntu1_ppc64el.deb ... 111s Unpacking libstdc++6:ppc64el (14.2.0-17ubuntu1) over (14.2.0-16ubuntu1) ... 111s Setting up libstdc++6:ppc64el (14.2.0-17ubuntu1) ... 111s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 106311 files and directories currently installed.) 111s Preparing to unpack .../libgcc-s1_14.2.0-17ubuntu1_ppc64el.deb ... 111s Unpacking libgcc-s1:ppc64el (14.2.0-17ubuntu1) over (14.2.0-16ubuntu1) ... 111s Setting up libgcc-s1:ppc64el (14.2.0-17ubuntu1) ... 111s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 106311 files and directories currently installed.) 111s Preparing to unpack .../libp11-kit0_0.25.5-2ubuntu2_ppc64el.deb ... 111s Unpacking libp11-kit0:ppc64el (0.25.5-2ubuntu2) over (0.25.5-2ubuntu1) ... 111s Preparing to unpack .../libtasn1-6_4.20.0-2_ppc64el.deb ... 111s Unpacking libtasn1-6:ppc64el (4.20.0-2) over (4.19.0-3build1) ... 111s Preparing to unpack .../libxdmcp6_1%3a1.1.5-1_ppc64el.deb ... 111s Unpacking libxdmcp6:ppc64el (1:1.1.5-1) over (1:1.1.3-0ubuntu6) ... 111s Setting up libxdmcp6:ppc64el (1:1.1.5-1) ... 111s Setting up libp11-kit0:ppc64el (0.25.5-2ubuntu2) ... 111s Setting up libatomic1:ppc64el (14.2.0-17ubuntu1) ... 111s Setting up libtasn1-6:ppc64el (4.20.0-2) ... 111s Processing triggers for libc-bin (2.40-4ubuntu1) ... 111s Processing triggers for man-db (2.13.0-1) ... 112s Processing triggers for debianutils (5.21) ... 112s Reading package lists... 113s Building dependency tree... 113s Reading state information... 113s 0 upgraded, 0 newly installed, 0 to remove and 6 not upgraded. 113s autopkgtest [06:55:35]: upgrading testbed (apt dist-upgrade and autopurge) 113s Reading package lists... 113s Building dependency tree... 113s Reading state information... 113s Calculating upgrade...Starting pkgProblemResolver with broken count: 0 113s Starting 2 pkgProblemResolver with broken count: 0 113s Done 114s Entering ResolveByKeep 114s 114s The following packages will be upgraded: 114s iproute2 libc-bin libc-dev-bin libc6 libc6-dev locales 114s 6 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 114s Need to get 11.7 MB of archives. 114s After this operation, 358 kB of additional disk space will be used. 114s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed/main ppc64el libc-dev-bin ppc64el 2.41-1ubuntu1 [25.3 kB] 114s Get:2 http://ftpmaster.internal/ubuntu plucky-proposed/main ppc64el libc6-dev ppc64el 2.41-1ubuntu1 [2046 kB] 115s Get:3 http://ftpmaster.internal/ubuntu plucky-proposed/main ppc64el locales all 2.41-1ubuntu1 [4246 kB] 115s Get:4 http://ftpmaster.internal/ubuntu plucky-proposed/main ppc64el libc6 ppc64el 2.41-1ubuntu1 [3243 kB] 115s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/main ppc64el libc-bin ppc64el 2.41-1ubuntu1 [742 kB] 115s Get:6 http://ftpmaster.internal/ubuntu plucky-proposed/main ppc64el iproute2 ppc64el 6.13.0-1ubuntu1 [1419 kB] 115s Preconfiguring packages ... 115s Fetched 11.7 MB in 1s (13.0 MB/s) 116s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 106311 files and directories currently installed.) 116s Preparing to unpack .../libc-dev-bin_2.41-1ubuntu1_ppc64el.deb ... 116s Unpacking libc-dev-bin (2.41-1ubuntu1) over (2.40-4ubuntu1) ... 116s Preparing to unpack .../libc6-dev_2.41-1ubuntu1_ppc64el.deb ... 116s Unpacking libc6-dev:ppc64el (2.41-1ubuntu1) over (2.40-4ubuntu1) ... 116s Preparing to unpack .../locales_2.41-1ubuntu1_all.deb ... 116s Unpacking locales (2.41-1ubuntu1) over (2.40-4ubuntu1) ... 116s Preparing to unpack .../libc6_2.41-1ubuntu1_ppc64el.deb ... 116s Checking for services that may need to be restarted... 116s Checking init scripts... 116s Checking for services that may need to be restarted... 116s Checking init scripts... 116s Stopping some services possibly affected by the upgrade (will be restarted later): 116s cron: stopping...done. 116s 116s Unpacking libc6:ppc64el (2.41-1ubuntu1) over (2.40-4ubuntu1) ... 117s Setting up libc6:ppc64el (2.41-1ubuntu1) ... 117s Checking for services that may need to be restarted... 117s Checking init scripts... 117s Restarting services possibly affected by the upgrade: 117s cron: restarting...done. 117s 117s Services restarted successfully. 117s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 106312 files and directories currently installed.) 117s Preparing to unpack .../libc-bin_2.41-1ubuntu1_ppc64el.deb ... 117s Unpacking libc-bin (2.41-1ubuntu1) over (2.40-4ubuntu1) ... 117s Setting up libc-bin (2.41-1ubuntu1) ... 117s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 106312 files and directories currently installed.) 117s Preparing to unpack .../iproute2_6.13.0-1ubuntu1_ppc64el.deb ... 117s Unpacking iproute2 (6.13.0-1ubuntu1) over (6.10.0-2ubuntu1) ... 117s Setting up iproute2 (6.13.0-1ubuntu1) ... 118s Setting up locales (2.41-1ubuntu1) ... 118s Installing new version of config file /etc/locale.alias ... 118s Generating locales (this might take a while)... 120s en_US.UTF-8... done 120s Generation complete. 120s Setting up libc-dev-bin (2.41-1ubuntu1) ... 120s Setting up libc6-dev:ppc64el (2.41-1ubuntu1) ... 120s Processing triggers for man-db (2.13.0-1) ... 121s Processing triggers for systemd (257.2-3ubuntu1) ... 122s Reading package lists... 122s Building dependency tree... 122s Reading state information... 123s Starting pkgProblemResolver with broken count: 0 123s Starting 2 pkgProblemResolver with broken count: 0 123s Done 123s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 126s autopkgtest [06:55:48]: testbed running kernel: Linux 6.12.0-15-generic #15-Ubuntu SMP Tue Feb 4 16:32:08 UTC 2025 126s autopkgtest [06:55:48]: @@@@@@@@@@@@@@@@@@@@ apt-source parsnp 128s Get:1 http://ftpmaster.internal/ubuntu plucky/universe parsnp 2.0.3+dfsg-1ubuntu1 (dsc) [2258 B] 128s Get:2 http://ftpmaster.internal/ubuntu plucky/universe parsnp 2.0.3+dfsg-1ubuntu1 (tar) [141 kB] 128s Get:3 http://ftpmaster.internal/ubuntu plucky/universe parsnp 2.0.3+dfsg-1ubuntu1 (diff) [10.2 kB] 128s gpgv: Signature made Tue Apr 16 02:55:48 2024 UTC 128s gpgv: using RSA key AC483F68DE728F43F2202FCA568D30F321B2133D 128s gpgv: issuer "steve.langasek@ubuntu.com" 128s gpgv: Can't check signature: No public key 128s dpkg-source: warning: cannot verify inline signature for ./parsnp_2.0.3+dfsg-1ubuntu1.dsc: no acceptable signature found 128s autopkgtest [06:55:50]: testing package parsnp version 2.0.3+dfsg-1ubuntu1 128s autopkgtest [06:55:50]: build not needed 129s autopkgtest [06:55:51]: test run-unit-test: preparing testbed 129s Reading package lists... 129s Building dependency tree... 129s Reading state information... 129s Starting pkgProblemResolver with broken count: 0 129s Starting 2 pkgProblemResolver with broken count: 0 129s Done 130s The following NEW packages will be installed: 130s fasttree fontconfig-config fonts-dejavu-core fonts-dejavu-mono 130s fonts-urw-base35 harvest-tools libblas3 libcairo2 libcapnp-1.1.0 libdeflate0 130s libfontconfig1 libfontenc1 libgfortran5 libgomp1 libgraphite2-3 130s libharfbuzz0b libimagequant0 libjbig0 libjpeg-turbo8 libjpeg8 liblapack3 130s liblcms2-2 liblerc4 libmuscle1 libopenjp2-7 libpixman-1-0 libprotobuf32t64 130s libraqm0 libsharpyuv0 libspoa7.0.0 libtiff6 libwebp7 libwebpdemux2 130s libwebpmux3 libxcb-render0 libxcb-shm0 libxrender1 mummer parsnp phipack 130s python3-biopython python3-cairo python3-freetype python3-numpy python3-pil 130s python3-pyspoa python3-reportlab python3-rlpycairo python3-tqdm raxml 130s sgml-base w3c-sgml-lib x11-common xfonts-encodings xfonts-utils xml-core 130s 0 upgraded, 56 newly installed, 0 to remove and 0 not upgraded. 130s Need to get 35.5 MB of archives. 130s After this operation, 128 MB of additional disk space will be used. 130s Get:1 http://ftpmaster.internal/ubuntu plucky/main ppc64el sgml-base all 1.31 [11.4 kB] 130s Get:2 http://ftpmaster.internal/ubuntu plucky/main ppc64el fonts-dejavu-mono all 2.37-8 [502 kB] 130s Get:3 http://ftpmaster.internal/ubuntu plucky/main ppc64el fonts-dejavu-core all 2.37-8 [835 kB] 130s Get:4 http://ftpmaster.internal/ubuntu plucky/main ppc64el libfontenc1 ppc64el 1:1.1.8-1build1 [15.8 kB] 130s Get:5 http://ftpmaster.internal/ubuntu plucky/main ppc64el x11-common all 1:7.7+23ubuntu3 [21.7 kB] 130s Get:6 http://ftpmaster.internal/ubuntu plucky/main ppc64el xfonts-encodings all 1:1.0.5-0ubuntu2 [578 kB] 130s Get:7 http://ftpmaster.internal/ubuntu plucky/main ppc64el xfonts-utils ppc64el 1:7.7+7 [114 kB] 130s Get:8 http://ftpmaster.internal/ubuntu plucky/main ppc64el fonts-urw-base35 all 20200910-8 [11.0 MB] 131s Get:9 http://ftpmaster.internal/ubuntu plucky/main ppc64el fontconfig-config ppc64el 2.15.0-1.1ubuntu2 [37.4 kB] 131s Get:10 http://ftpmaster.internal/ubuntu plucky/universe ppc64el libcapnp-1.1.0 ppc64el 1.1.0-2 [1576 kB] 131s Get:11 http://ftpmaster.internal/ubuntu plucky/main ppc64el libprotobuf32t64 ppc64el 3.21.12-10build1 [976 kB] 131s Get:12 http://ftpmaster.internal/ubuntu plucky/universe ppc64el harvest-tools ppc64el 1.3-8build6 [140 kB] 131s Get:13 http://ftpmaster.internal/ubuntu plucky/main ppc64el libblas3 ppc64el 3.12.1-2 [239 kB] 131s Get:14 http://ftpmaster.internal/ubuntu plucky/main ppc64el libfontconfig1 ppc64el 2.15.0-1.1ubuntu2 [190 kB] 131s Get:15 http://ftpmaster.internal/ubuntu plucky/main ppc64el libpixman-1-0 ppc64el 0.44.0-3 [334 kB] 131s Get:16 http://ftpmaster.internal/ubuntu plucky/main ppc64el libxcb-render0 ppc64el 1.17.0-2 [17.2 kB] 131s Get:17 http://ftpmaster.internal/ubuntu plucky/main ppc64el libxcb-shm0 ppc64el 1.17.0-2 [5980 B] 131s Get:18 http://ftpmaster.internal/ubuntu plucky/main ppc64el libxrender1 ppc64el 1:0.9.10-1.1build1 [23.1 kB] 131s Get:19 http://ftpmaster.internal/ubuntu plucky/main ppc64el libcairo2 ppc64el 1.18.2-2 [747 kB] 131s Get:20 http://ftpmaster.internal/ubuntu plucky/main ppc64el libdeflate0 ppc64el 1.23-1 [63.4 kB] 131s Get:21 http://ftpmaster.internal/ubuntu plucky/main ppc64el libgfortran5 ppc64el 14.2.0-17ubuntu1 [571 kB] 131s Get:22 http://ftpmaster.internal/ubuntu plucky/main ppc64el libgomp1 ppc64el 14.2.0-17ubuntu1 [161 kB] 131s Get:23 http://ftpmaster.internal/ubuntu plucky/main ppc64el libgraphite2-3 ppc64el 1.3.14-2ubuntu1 [84.6 kB] 131s Get:24 http://ftpmaster.internal/ubuntu plucky/main ppc64el libharfbuzz0b ppc64el 10.2.0-1 [598 kB] 131s Get:25 http://ftpmaster.internal/ubuntu plucky/main ppc64el libimagequant0 ppc64el 2.18.0-1build1 [43.2 kB] 131s Get:26 http://ftpmaster.internal/ubuntu plucky/main ppc64el libjpeg-turbo8 ppc64el 2.1.5-3ubuntu2 [215 kB] 131s Get:27 http://ftpmaster.internal/ubuntu plucky/main ppc64el libjpeg8 ppc64el 8c-2ubuntu11 [2148 B] 131s Get:28 http://ftpmaster.internal/ubuntu plucky/main ppc64el liblapack3 ppc64el 3.12.1-2 [2813 kB] 131s Get:29 http://ftpmaster.internal/ubuntu plucky/main ppc64el liblcms2-2 ppc64el 2.16-2 [243 kB] 131s Get:30 http://ftpmaster.internal/ubuntu plucky/main ppc64el liblerc4 ppc64el 4.0.0+ds-5ubuntu1 [298 kB] 131s Get:31 http://ftpmaster.internal/ubuntu plucky/universe ppc64el libmuscle1 ppc64el 3.7+4565-8 [324 kB] 131s Get:32 http://ftpmaster.internal/ubuntu plucky/main ppc64el libraqm0 ppc64el 0.10.2-1 [19.2 kB] 131s Get:33 http://ftpmaster.internal/ubuntu plucky/main ppc64el libsharpyuv0 ppc64el 1.5.0-0.1 [22.3 kB] 131s Get:34 http://ftpmaster.internal/ubuntu plucky/universe ppc64el libspoa7.0.0 ppc64el 4.1.4-2 [69.6 kB] 131s Get:35 http://ftpmaster.internal/ubuntu plucky/main ppc64el libjbig0 ppc64el 2.1-6.1ubuntu2 [35.9 kB] 131s Get:36 http://ftpmaster.internal/ubuntu plucky/main ppc64el libwebp7 ppc64el 1.5.0-0.1 [315 kB] 131s Get:37 http://ftpmaster.internal/ubuntu plucky/main ppc64el libtiff6 ppc64el 4.5.1+git230720-4ubuntu4 [272 kB] 131s Get:38 http://ftpmaster.internal/ubuntu plucky/main ppc64el libwebpdemux2 ppc64el 1.5.0-0.1 [14.6 kB] 131s Get:39 http://ftpmaster.internal/ubuntu plucky/main ppc64el libwebpmux3 ppc64el 1.5.0-0.1 [31.1 kB] 131s Get:40 http://ftpmaster.internal/ubuntu plucky/universe ppc64el mummer ppc64el 3.23+dfsg-8 [714 kB] 131s Get:41 http://ftpmaster.internal/ubuntu plucky/main ppc64el python3-numpy ppc64el 1:1.26.4+ds-13 [5146 kB] 131s Get:42 http://ftpmaster.internal/ubuntu plucky/main ppc64el libopenjp2-7 ppc64el 2.5.0-2ubuntu3 [247 kB] 131s Get:43 http://ftpmaster.internal/ubuntu plucky/main ppc64el python3-pil ppc64el 11.1.0-5 [618 kB] 131s Get:44 http://ftpmaster.internal/ubuntu plucky/main ppc64el python3-cairo ppc64el 1.26.1-2build1 [150 kB] 131s Get:45 http://ftpmaster.internal/ubuntu plucky/universe ppc64el python3-freetype all 2.5.1-1 [92.3 kB] 131s Get:46 http://ftpmaster.internal/ubuntu plucky/universe ppc64el python3-rlpycairo all 0.3.0-3 [9130 B] 131s Get:47 http://ftpmaster.internal/ubuntu plucky/universe ppc64el python3-reportlab all 4.3.0-1 [1137 kB] 131s Get:48 http://ftpmaster.internal/ubuntu plucky/main ppc64el xml-core all 0.19 [20.3 kB] 131s Get:49 http://ftpmaster.internal/ubuntu plucky/universe ppc64el w3c-sgml-lib all 1.3-3 [280 kB] 131s Get:50 http://ftpmaster.internal/ubuntu plucky/universe ppc64el python3-biopython ppc64el 1.85+dfsg-2 [1771 kB] 131s Get:51 http://ftpmaster.internal/ubuntu plucky/universe ppc64el python3-pyspoa ppc64el 0.2.1-1 [87.2 kB] 131s Get:52 http://ftpmaster.internal/ubuntu plucky/universe ppc64el python3-tqdm all 4.67.1-2 [92.5 kB] 131s Get:53 http://ftpmaster.internal/ubuntu plucky/universe ppc64el fasttree ppc64el 2.1.11-2 [218 kB] 131s Get:54 http://ftpmaster.internal/ubuntu plucky/universe ppc64el phipack ppc64el 0.0.20160614-5 [58.6 kB] 132s Get:55 http://ftpmaster.internal/ubuntu plucky/universe ppc64el raxml ppc64el 8.2.13+dfsg-1 [1068 kB] 132s Get:56 http://ftpmaster.internal/ubuntu plucky/universe ppc64el parsnp ppc64el 2.0.3+dfsg-1ubuntu1 [224 kB] 132s Fetched 35.5 MB in 2s (18.4 MB/s) 132s Selecting previously unselected package sgml-base. 132s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 106313 files and directories currently installed.) 132s Preparing to unpack .../00-sgml-base_1.31_all.deb ... 132s Unpacking sgml-base (1.31) ... 132s Selecting previously unselected package fonts-dejavu-mono. 132s Preparing to unpack .../01-fonts-dejavu-mono_2.37-8_all.deb ... 132s Unpacking fonts-dejavu-mono (2.37-8) ... 132s Selecting previously unselected package fonts-dejavu-core. 132s Preparing to unpack .../02-fonts-dejavu-core_2.37-8_all.deb ... 132s Unpacking fonts-dejavu-core (2.37-8) ... 132s Selecting previously unselected package libfontenc1:ppc64el. 132s Preparing to unpack .../03-libfontenc1_1%3a1.1.8-1build1_ppc64el.deb ... 132s Unpacking libfontenc1:ppc64el (1:1.1.8-1build1) ... 132s Selecting previously unselected package x11-common. 132s Preparing to unpack .../04-x11-common_1%3a7.7+23ubuntu3_all.deb ... 132s Unpacking x11-common (1:7.7+23ubuntu3) ... 132s Selecting previously unselected package xfonts-encodings. 132s Preparing to unpack .../05-xfonts-encodings_1%3a1.0.5-0ubuntu2_all.deb ... 132s Unpacking xfonts-encodings (1:1.0.5-0ubuntu2) ... 132s Selecting previously unselected package xfonts-utils. 132s Preparing to unpack .../06-xfonts-utils_1%3a7.7+7_ppc64el.deb ... 132s Unpacking xfonts-utils (1:7.7+7) ... 132s Selecting previously unselected package fonts-urw-base35. 132s Preparing to unpack .../07-fonts-urw-base35_20200910-8_all.deb ... 132s Unpacking fonts-urw-base35 (20200910-8) ... 132s Selecting previously unselected package fontconfig-config. 132s Preparing to unpack .../08-fontconfig-config_2.15.0-1.1ubuntu2_ppc64el.deb ... 132s Unpacking fontconfig-config (2.15.0-1.1ubuntu2) ... 132s Selecting previously unselected package libcapnp-1.1.0:ppc64el. 132s Preparing to unpack .../09-libcapnp-1.1.0_1.1.0-2_ppc64el.deb ... 132s Unpacking libcapnp-1.1.0:ppc64el (1.1.0-2) ... 133s Selecting previously unselected package libprotobuf32t64:ppc64el. 133s Preparing to unpack .../10-libprotobuf32t64_3.21.12-10build1_ppc64el.deb ... 133s Unpacking libprotobuf32t64:ppc64el (3.21.12-10build1) ... 133s Selecting previously unselected package harvest-tools. 133s Preparing to unpack .../11-harvest-tools_1.3-8build6_ppc64el.deb ... 133s Unpacking harvest-tools (1.3-8build6) ... 133s Selecting previously unselected package libblas3:ppc64el. 133s Preparing to unpack .../12-libblas3_3.12.1-2_ppc64el.deb ... 133s Unpacking libblas3:ppc64el (3.12.1-2) ... 133s Selecting previously unselected package libfontconfig1:ppc64el. 133s Preparing to unpack .../13-libfontconfig1_2.15.0-1.1ubuntu2_ppc64el.deb ... 133s Unpacking libfontconfig1:ppc64el (2.15.0-1.1ubuntu2) ... 133s Selecting previously unselected package libpixman-1-0:ppc64el. 133s Preparing to unpack .../14-libpixman-1-0_0.44.0-3_ppc64el.deb ... 133s Unpacking libpixman-1-0:ppc64el (0.44.0-3) ... 133s Selecting previously unselected package libxcb-render0:ppc64el. 133s Preparing to unpack .../15-libxcb-render0_1.17.0-2_ppc64el.deb ... 133s Unpacking libxcb-render0:ppc64el (1.17.0-2) ... 133s Selecting previously unselected package libxcb-shm0:ppc64el. 133s Preparing to unpack .../16-libxcb-shm0_1.17.0-2_ppc64el.deb ... 133s Unpacking libxcb-shm0:ppc64el (1.17.0-2) ... 133s Selecting previously unselected package libxrender1:ppc64el. 133s Preparing to unpack .../17-libxrender1_1%3a0.9.10-1.1build1_ppc64el.deb ... 133s Unpacking libxrender1:ppc64el (1:0.9.10-1.1build1) ... 133s Selecting previously unselected package libcairo2:ppc64el. 133s Preparing to unpack .../18-libcairo2_1.18.2-2_ppc64el.deb ... 133s Unpacking libcairo2:ppc64el (1.18.2-2) ... 133s Selecting previously unselected package libdeflate0:ppc64el. 133s Preparing to unpack .../19-libdeflate0_1.23-1_ppc64el.deb ... 133s Unpacking libdeflate0:ppc64el (1.23-1) ... 133s Selecting previously unselected package libgfortran5:ppc64el. 133s Preparing to unpack .../20-libgfortran5_14.2.0-17ubuntu1_ppc64el.deb ... 133s Unpacking libgfortran5:ppc64el (14.2.0-17ubuntu1) ... 133s Selecting previously unselected package libgomp1:ppc64el. 133s Preparing to unpack .../21-libgomp1_14.2.0-17ubuntu1_ppc64el.deb ... 133s Unpacking libgomp1:ppc64el (14.2.0-17ubuntu1) ... 133s Selecting previously unselected package libgraphite2-3:ppc64el. 133s Preparing to unpack .../22-libgraphite2-3_1.3.14-2ubuntu1_ppc64el.deb ... 133s Unpacking libgraphite2-3:ppc64el (1.3.14-2ubuntu1) ... 133s Selecting previously unselected package libharfbuzz0b:ppc64el. 133s Preparing to unpack .../23-libharfbuzz0b_10.2.0-1_ppc64el.deb ... 133s Unpacking libharfbuzz0b:ppc64el (10.2.0-1) ... 133s Selecting previously unselected package libimagequant0:ppc64el. 133s Preparing to unpack .../24-libimagequant0_2.18.0-1build1_ppc64el.deb ... 133s Unpacking libimagequant0:ppc64el (2.18.0-1build1) ... 133s Selecting previously unselected package libjpeg-turbo8:ppc64el. 133s Preparing to unpack .../25-libjpeg-turbo8_2.1.5-3ubuntu2_ppc64el.deb ... 133s Unpacking libjpeg-turbo8:ppc64el (2.1.5-3ubuntu2) ... 133s Selecting previously unselected package libjpeg8:ppc64el. 133s Preparing to unpack .../26-libjpeg8_8c-2ubuntu11_ppc64el.deb ... 133s Unpacking libjpeg8:ppc64el (8c-2ubuntu11) ... 133s Selecting previously unselected package liblapack3:ppc64el. 133s Preparing to unpack .../27-liblapack3_3.12.1-2_ppc64el.deb ... 133s Unpacking liblapack3:ppc64el (3.12.1-2) ... 133s Selecting previously unselected package liblcms2-2:ppc64el. 133s Preparing to unpack .../28-liblcms2-2_2.16-2_ppc64el.deb ... 133s Unpacking liblcms2-2:ppc64el (2.16-2) ... 133s Selecting previously unselected package liblerc4:ppc64el. 133s Preparing to unpack .../29-liblerc4_4.0.0+ds-5ubuntu1_ppc64el.deb ... 133s Unpacking liblerc4:ppc64el (4.0.0+ds-5ubuntu1) ... 133s Selecting previously unselected package libmuscle1. 133s Preparing to unpack .../30-libmuscle1_3.7+4565-8_ppc64el.deb ... 133s Unpacking libmuscle1 (3.7+4565-8) ... 133s Selecting previously unselected package libraqm0:ppc64el. 133s Preparing to unpack .../31-libraqm0_0.10.2-1_ppc64el.deb ... 133s Unpacking libraqm0:ppc64el (0.10.2-1) ... 133s Selecting previously unselected package libsharpyuv0:ppc64el. 133s Preparing to unpack .../32-libsharpyuv0_1.5.0-0.1_ppc64el.deb ... 133s Unpacking libsharpyuv0:ppc64el (1.5.0-0.1) ... 133s Selecting previously unselected package libspoa7.0.0:ppc64el. 133s Preparing to unpack .../33-libspoa7.0.0_4.1.4-2_ppc64el.deb ... 133s Unpacking libspoa7.0.0:ppc64el (4.1.4-2) ... 133s Selecting previously unselected package libjbig0:ppc64el. 133s Preparing to unpack .../34-libjbig0_2.1-6.1ubuntu2_ppc64el.deb ... 133s Unpacking libjbig0:ppc64el (2.1-6.1ubuntu2) ... 133s Selecting previously unselected package libwebp7:ppc64el. 133s Preparing to unpack .../35-libwebp7_1.5.0-0.1_ppc64el.deb ... 133s Unpacking libwebp7:ppc64el (1.5.0-0.1) ... 133s Selecting previously unselected package libtiff6:ppc64el. 133s Preparing to unpack .../36-libtiff6_4.5.1+git230720-4ubuntu4_ppc64el.deb ... 133s Unpacking libtiff6:ppc64el (4.5.1+git230720-4ubuntu4) ... 133s Selecting previously unselected package libwebpdemux2:ppc64el. 133s Preparing to unpack .../37-libwebpdemux2_1.5.0-0.1_ppc64el.deb ... 133s Unpacking libwebpdemux2:ppc64el (1.5.0-0.1) ... 133s Selecting previously unselected package libwebpmux3:ppc64el. 133s Preparing to unpack .../38-libwebpmux3_1.5.0-0.1_ppc64el.deb ... 133s Unpacking libwebpmux3:ppc64el (1.5.0-0.1) ... 133s Selecting previously unselected package mummer. 133s Preparing to unpack .../39-mummer_3.23+dfsg-8_ppc64el.deb ... 133s Unpacking mummer (3.23+dfsg-8) ... 133s Selecting previously unselected package python3-numpy. 133s Preparing to unpack .../40-python3-numpy_1%3a1.26.4+ds-13_ppc64el.deb ... 133s Unpacking python3-numpy (1:1.26.4+ds-13) ... 133s Selecting previously unselected package libopenjp2-7:ppc64el. 133s Preparing to unpack .../41-libopenjp2-7_2.5.0-2ubuntu3_ppc64el.deb ... 133s Unpacking libopenjp2-7:ppc64el (2.5.0-2ubuntu3) ... 133s Selecting previously unselected package python3-pil:ppc64el. 133s Preparing to unpack .../42-python3-pil_11.1.0-5_ppc64el.deb ... 133s Unpacking python3-pil:ppc64el (11.1.0-5) ... 133s Selecting previously unselected package python3-cairo. 133s Preparing to unpack .../43-python3-cairo_1.26.1-2build1_ppc64el.deb ... 133s Unpacking python3-cairo (1.26.1-2build1) ... 134s Selecting previously unselected package python3-freetype. 134s Preparing to unpack .../44-python3-freetype_2.5.1-1_all.deb ... 134s Unpacking python3-freetype (2.5.1-1) ... 134s Selecting previously unselected package python3-rlpycairo. 134s Preparing to unpack .../45-python3-rlpycairo_0.3.0-3_all.deb ... 134s Unpacking python3-rlpycairo (0.3.0-3) ... 134s Selecting previously unselected package python3-reportlab. 134s Preparing to unpack .../46-python3-reportlab_4.3.0-1_all.deb ... 134s Unpacking python3-reportlab (4.3.0-1) ... 134s Selecting previously unselected package xml-core. 134s Preparing to unpack .../47-xml-core_0.19_all.deb ... 134s Unpacking xml-core (0.19) ... 134s Selecting previously unselected package w3c-sgml-lib. 134s Preparing to unpack .../48-w3c-sgml-lib_1.3-3_all.deb ... 134s Unpacking w3c-sgml-lib (1.3-3) ... 134s Selecting previously unselected package python3-biopython. 134s Preparing to unpack .../49-python3-biopython_1.85+dfsg-2_ppc64el.deb ... 134s Unpacking python3-biopython (1.85+dfsg-2) ... 134s Selecting previously unselected package python3-pyspoa. 134s Preparing to unpack .../50-python3-pyspoa_0.2.1-1_ppc64el.deb ... 134s Unpacking python3-pyspoa (0.2.1-1) ... 134s Selecting previously unselected package python3-tqdm. 134s Preparing to unpack .../51-python3-tqdm_4.67.1-2_all.deb ... 134s Unpacking python3-tqdm (4.67.1-2) ... 134s Selecting previously unselected package fasttree. 134s Preparing to unpack .../52-fasttree_2.1.11-2_ppc64el.deb ... 134s Unpacking fasttree (2.1.11-2) ... 134s Selecting previously unselected package phipack. 134s Preparing to unpack .../53-phipack_0.0.20160614-5_ppc64el.deb ... 134s Unpacking phipack (0.0.20160614-5) ... 134s Selecting previously unselected package raxml. 134s Preparing to unpack .../54-raxml_8.2.13+dfsg-1_ppc64el.deb ... 134s Unpacking raxml (8.2.13+dfsg-1) ... 134s Selecting previously unselected package parsnp. 134s Preparing to unpack .../55-parsnp_2.0.3+dfsg-1ubuntu1_ppc64el.deb ... 134s Unpacking parsnp (2.0.3+dfsg-1ubuntu1) ... 134s Setting up libgraphite2-3:ppc64el (1.3.14-2ubuntu1) ... 134s Setting up liblcms2-2:ppc64el (2.16-2) ... 134s Setting up libpixman-1-0:ppc64el (0.44.0-3) ... 134s Setting up libsharpyuv0:ppc64el (1.5.0-0.1) ... 134s Setting up libprotobuf32t64:ppc64el (3.21.12-10build1) ... 134s Setting up liblerc4:ppc64el (4.0.0+ds-5ubuntu1) ... 134s Setting up libxrender1:ppc64el (1:0.9.10-1.1build1) ... 134s Setting up libxcb-render0:ppc64el (1.17.0-2) ... 134s Setting up python3-tqdm (4.67.1-2) ... 134s Setting up x11-common (1:7.7+23ubuntu3) ... 135s Setting up libdeflate0:ppc64el (1.23-1) ... 135s Setting up libxcb-shm0:ppc64el (1.17.0-2) ... 135s Setting up libgomp1:ppc64el (14.2.0-17ubuntu1) ... 135s Setting up python3-freetype (2.5.1-1) ... 135s Setting up libjbig0:ppc64el (2.1-6.1ubuntu2) ... 135s Setting up libfontenc1:ppc64el (1:1.1.8-1build1) ... 135s Setting up libblas3:ppc64el (3.12.1-2) ... 135s update-alternatives: using /usr/lib/powerpc64le-linux-gnu/blas/libblas.so.3 to provide /usr/lib/powerpc64le-linux-gnu/libblas.so.3 (libblas.so.3-powerpc64le-linux-gnu) in auto mode 135s Setting up xfonts-encodings (1:1.0.5-0ubuntu2) ... 135s Setting up libimagequant0:ppc64el (2.18.0-1build1) ... 135s Setting up fonts-dejavu-mono (2.37-8) ... 135s Setting up libspoa7.0.0:ppc64el (4.1.4-2) ... 135s Setting up fonts-dejavu-core (2.37-8) ... 135s Setting up libjpeg-turbo8:ppc64el (2.1.5-3ubuntu2) ... 135s Setting up libgfortran5:ppc64el (14.2.0-17ubuntu1) ... 135s Setting up libwebp7:ppc64el (1.5.0-0.1) ... 135s Setting up mummer (3.23+dfsg-8) ... 135s Setting up libopenjp2-7:ppc64el (2.5.0-2ubuntu3) ... 135s Setting up libharfbuzz0b:ppc64el (10.2.0-1) ... 135s Setting up phipack (0.0.20160614-5) ... 135s Setting up fasttree (2.1.11-2) ... 135s Setting up sgml-base (1.31) ... 135s Setting up libcapnp-1.1.0:ppc64el (1.1.0-2) ... 135s Setting up harvest-tools (1.3-8build6) ... 135s Setting up libwebpmux3:ppc64el (1.5.0-0.1) ... 135s Setting up raxml (8.2.13+dfsg-1) ... 135s Setting up libjpeg8:ppc64el (8c-2ubuntu11) ... 135s Setting up python3-pyspoa (0.2.1-1) ... 135s Setting up liblapack3:ppc64el (3.12.1-2) ... 135s update-alternatives: using /usr/lib/powerpc64le-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/powerpc64le-linux-gnu/liblapack.so.3 (liblapack.so.3-powerpc64le-linux-gnu) in auto mode 135s Setting up libmuscle1 (3.7+4565-8) ... 135s Setting up fontconfig-config (2.15.0-1.1ubuntu2) ... 135s Setting up libwebpdemux2:ppc64el (1.5.0-0.1) ... 135s Setting up xfonts-utils (1:7.7+7) ... 135s Setting up libraqm0:ppc64el (0.10.2-1) ... 135s Setting up python3-numpy (1:1.26.4+ds-13) ... 137s Setting up libtiff6:ppc64el (4.5.1+git230720-4ubuntu4) ... 137s Setting up xml-core (0.19) ... 137s Setting up libfontconfig1:ppc64el (2.15.0-1.1ubuntu2) ... 137s Setting up fonts-urw-base35 (20200910-8) ... 137s Setting up libcairo2:ppc64el (1.18.2-2) ... 137s Setting up python3-pil:ppc64el (11.1.0-5) ... 138s Setting up python3-cairo (1.26.1-2build1) ... 138s Setting up python3-rlpycairo (0.3.0-3) ... 138s Setting up python3-reportlab (4.3.0-1) ... 138s Processing triggers for libc-bin (2.41-1ubuntu1) ... 138s Processing triggers for man-db (2.13.0-1) ... 139s Processing triggers for sgml-base (1.31) ... 139s Setting up w3c-sgml-lib (1.3-3) ... 171s Setting up python3-biopython (1.85+dfsg-2) ... 172s Setting up parsnp (2.0.3+dfsg-1ubuntu1) ... 173s autopkgtest [06:56:35]: test run-unit-test: [----------------------- 173s Test 1: With GenBank Annotations 173s 06:56:35 - INFO - |--Parsnp 2.0.3--| 173s 173s 06:56:35 - INFO - 173s ********************************************************************************** 173s SETTINGS: 173s |-refgenome: mers_virus/ref/England1.gbk 173s |-genomes: 173s mers_virus/genomes/KSA-CAMEL-363.fna 173s mers_virus/genomes/KF192507.1.fna 173s ...42 more file(s)... 173s mers_virus/genomes/Al-Hasa_12_2013.fna 173s mers_virus/genomes/Riyadh_9_2013.fna 173s |-aligner: muscle 173s |-outdir: /tmp/autopkgtest.bdu7GI/autopkgtest_tmp/P_2025_02_16_065635540984 173s |-OS: Linux 173s |-threads: 1 173s ********************************************************************************** 173s 173s 06:56:35 - INFO - <> 173s 06:56:35 - INFO - Running Parsnp multi-MUM search and libMUSCLE aligner... 174s 06:56:36 - INFO - Reconstructing core genome phylogeny... 179s 06:56:41 - INFO - Aligned 46 genomes in 6.16 seconds 179s 06:56:41 - INFO - Parsnp finished! All output available in /tmp/autopkgtest.bdu7GI/autopkgtest_tmp/P_2025_02_16_065635540984 179s Passed 179s 179s Test 2: Without GenBank Annotations 179s 06:56:41 - INFO - |--Parsnp 2.0.3--| 179s 179s 06:56:41 - INFO - 179s ********************************************************************************** 179s SETTINGS: 179s |-refgenome: mers_virus/ref/England1.fna 179s |-genomes: 179s mers_virus/genomes/KSA-CAMEL-363.fna 179s mers_virus/genomes/KF192507.1.fna 179s ...42 more file(s)... 179s mers_virus/genomes/Al-Hasa_12_2013.fna 179s mers_virus/genomes/Riyadh_9_2013.fna 179s |-aligner: muscle 179s |-outdir: /tmp/autopkgtest.bdu7GI/autopkgtest_tmp/P_2025_02_16_065641947868 179s |-OS: Linux 179s |-threads: 1 179s ********************************************************************************** 179s 179s 06:56:41 - INFO - <> 179s 06:56:41 - INFO - No genbank file provided for reference annotations, skipping.. 179s 06:56:41 - INFO - Running Parsnp multi-MUM search and libMUSCLE aligner... 180s 06:56:42 - INFO - Reconstructing core genome phylogeny... 186s 06:56:48 - INFO - Aligned 46 genomes in 6.20 seconds 186s 06:56:48 - INFO - Parsnp finished! All output available in /tmp/autopkgtest.bdu7GI/autopkgtest_tmp/P_2025_02_16_065641947868 186s Passed 186s 186s autopkgtest [06:56:48]: test run-unit-test: -----------------------] 187s autopkgtest [06:56:49]: test run-unit-test: - - - - - - - - - - results - - - - - - - - - - 187s run-unit-test PASS 187s autopkgtest [06:56:49]: @@@@@@@@@@@@@@@@@@@@ summary 187s run-unit-test PASS 192s nova [W] Using flock in prodstack6-ppc64el 192s Creating nova instance adt-plucky-ppc64el-parsnp-20250216-054335-juju-7f2275-prod-proposed-migration-environment-2-37231637-2bf9-4d34-a08b-c666f59f46d4 from image adt/ubuntu-plucky-ppc64el-server-20250215.img (UUID 6b0563e5-c35c-4c0f-8fb5-aae43570455f)... 192s nova [W] Timed out waiting for 1b906454-8fdc-4fe8-8d1a-db3d8ef13bc2 to get deleted.