0s autopkgtest [05:39:57]: starting date and time: 2025-02-16 05:39:57+0000 0s autopkgtest [05:39:57]: git checkout: 325255d2 Merge branch 'pin-any-arch' into 'ubuntu/production' 0s autopkgtest [05:39:57]: host juju-7f2275-prod-proposed-migration-environment-2; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.7psbq8_b/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:glibc,src:iproute2,src:php-twig,src:postgresql-17,src:postgresql-common,src:roundcube --apt-upgrade pairtools --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 '--env=ADT_TEST_TRIGGERS=glibc/2.41-1ubuntu1 iproute2/6.13.0-1ubuntu1 php-twig/3.19.0-1 postgresql-17/17.3-2 postgresql-common/273 roundcube/1.6.10+dfsg-1' -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest-ppc64el --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-2@bos03-ppc64el-9.secgroup --name adt-plucky-ppc64el-pairtools-20250216-053957-juju-7f2275-prod-proposed-migration-environment-2-b1b8936e-291b-46dc-b8ad-64cf84a56e4e --image adt/ubuntu-plucky-ppc64el-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-2 --net-id=net_prod-proposed-migration-ppc64el -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,keyserver.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com,radosgw.ps5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/ 84s autopkgtest [05:41:21]: testbed dpkg architecture: ppc64el 85s autopkgtest [05:41:22]: testbed apt version: 2.9.28 85s autopkgtest [05:41:22]: @@@@@@@@@@@@@@@@@@@@ test bed setup 85s autopkgtest [05:41:22]: testbed release detected to be: None 86s autopkgtest [05:41:23]: updating testbed package index (apt update) 86s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease [110 kB] 87s Hit:2 http://ftpmaster.internal/ubuntu plucky InRelease 87s Hit:3 http://ftpmaster.internal/ubuntu plucky-updates InRelease 87s Hit:4 http://ftpmaster.internal/ubuntu plucky-security InRelease 87s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/restricted Sources [3120 B] 87s Get:6 http://ftpmaster.internal/ubuntu plucky-proposed/main Sources [73.0 kB] 87s Get:7 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse Sources [13.1 kB] 87s Get:8 http://ftpmaster.internal/ubuntu plucky-proposed/universe Sources [810 kB] 87s Get:9 http://ftpmaster.internal/ubuntu plucky-proposed/main ppc64el Packages [167 kB] 87s Get:10 http://ftpmaster.internal/ubuntu plucky-proposed/restricted ppc64el Packages [760 B] 87s Get:11 http://ftpmaster.internal/ubuntu plucky-proposed/universe ppc64el Packages [902 kB] 87s Get:12 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse ppc64el Packages [4228 B] 87s Fetched 2084 kB in 1s (1944 kB/s) 88s Reading package lists... 89s Reading package lists... 89s Building dependency tree... 89s Reading state information... 89s Calculating upgrade... 89s The following packages will be upgraded: 89s dash gcc-14-base libatomic1 libgcc-s1 libp11-kit0 libstdc++6 libtasn1-6 89s libxdmcp6 89s 8 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 89s Need to get 1476 kB of archives. 89s After this operation, 15.4 kB of additional disk space will be used. 89s Get:1 http://ftpmaster.internal/ubuntu plucky/main ppc64el dash ppc64el 0.5.12-12ubuntu1 [114 kB] 90s Get:2 http://ftpmaster.internal/ubuntu plucky/main ppc64el libatomic1 ppc64el 14.2.0-17ubuntu1 [10.7 kB] 90s Get:3 http://ftpmaster.internal/ubuntu plucky/main ppc64el gcc-14-base ppc64el 14.2.0-17ubuntu1 [53.6 kB] 90s Get:4 http://ftpmaster.internal/ubuntu plucky/main ppc64el libstdc++6 ppc64el 14.2.0-17ubuntu1 [886 kB] 90s Get:5 http://ftpmaster.internal/ubuntu plucky/main ppc64el libgcc-s1 ppc64el 14.2.0-17ubuntu1 [39.2 kB] 90s Get:6 http://ftpmaster.internal/ubuntu plucky/main ppc64el libp11-kit0 ppc64el 0.25.5-2ubuntu2 [305 kB] 90s Get:7 http://ftpmaster.internal/ubuntu plucky/main ppc64el libtasn1-6 ppc64el 4.20.0-2 [55.9 kB] 90s Get:8 http://ftpmaster.internal/ubuntu plucky/main ppc64el libxdmcp6 ppc64el 1:1.1.5-1 [11.6 kB] 90s Preconfiguring packages ... 90s Fetched 1476 kB in 1s (2380 kB/s) 91s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 106311 files and directories currently installed.) 91s Preparing to unpack .../dash_0.5.12-12ubuntu1_ppc64el.deb ... 91s Unpacking dash (0.5.12-12ubuntu1) over (0.5.12-9ubuntu1) ... 91s Setting up dash (0.5.12-12ubuntu1) ... 91s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 106311 files and directories currently installed.) 91s Preparing to unpack .../libatomic1_14.2.0-17ubuntu1_ppc64el.deb ... 91s Unpacking libatomic1:ppc64el (14.2.0-17ubuntu1) over (14.2.0-16ubuntu1) ... 91s Preparing to unpack .../gcc-14-base_14.2.0-17ubuntu1_ppc64el.deb ... 91s Unpacking gcc-14-base:ppc64el (14.2.0-17ubuntu1) over (14.2.0-16ubuntu1) ... 91s Setting up gcc-14-base:ppc64el (14.2.0-17ubuntu1) ... 91s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 106311 files and directories currently installed.) 91s Preparing to unpack .../libstdc++6_14.2.0-17ubuntu1_ppc64el.deb ... 91s Unpacking libstdc++6:ppc64el (14.2.0-17ubuntu1) over (14.2.0-16ubuntu1) ... 91s Setting up libstdc++6:ppc64el (14.2.0-17ubuntu1) ... 91s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 106311 files and directories currently installed.) 91s Preparing to unpack .../libgcc-s1_14.2.0-17ubuntu1_ppc64el.deb ... 91s Unpacking libgcc-s1:ppc64el (14.2.0-17ubuntu1) over (14.2.0-16ubuntu1) ... 91s Setting up libgcc-s1:ppc64el (14.2.0-17ubuntu1) ... 91s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 106311 files and directories currently installed.) 91s Preparing to unpack .../libp11-kit0_0.25.5-2ubuntu2_ppc64el.deb ... 91s Unpacking libp11-kit0:ppc64el (0.25.5-2ubuntu2) over (0.25.5-2ubuntu1) ... 91s Preparing to unpack .../libtasn1-6_4.20.0-2_ppc64el.deb ... 91s Unpacking libtasn1-6:ppc64el (4.20.0-2) over (4.19.0-3build1) ... 91s Preparing to unpack .../libxdmcp6_1%3a1.1.5-1_ppc64el.deb ... 91s Unpacking libxdmcp6:ppc64el (1:1.1.5-1) over (1:1.1.3-0ubuntu6) ... 91s Setting up libxdmcp6:ppc64el (1:1.1.5-1) ... 91s Setting up libp11-kit0:ppc64el (0.25.5-2ubuntu2) ... 91s Setting up libatomic1:ppc64el (14.2.0-17ubuntu1) ... 91s Setting up libtasn1-6:ppc64el (4.20.0-2) ... 91s Processing triggers for libc-bin (2.40-4ubuntu1) ... 91s Processing triggers for man-db (2.13.0-1) ... 92s Processing triggers for debianutils (5.21) ... 92s Reading package lists... 92s Building dependency tree... 92s Reading state information... 93s 0 upgraded, 0 newly installed, 0 to remove and 6 not upgraded. 93s autopkgtest [05:41:30]: upgrading testbed (apt dist-upgrade and autopurge) 93s Reading package lists... 93s Building dependency tree... 93s Reading state information... 94s Calculating upgrade...Starting pkgProblemResolver with broken count: 0 94s Starting 2 pkgProblemResolver with broken count: 0 94s Done 94s Entering ResolveByKeep 94s 95s The following packages will be upgraded: 95s iproute2 libc-bin libc-dev-bin libc6 libc6-dev locales 95s 6 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 95s Need to get 11.7 MB of archives. 95s After this operation, 358 kB of additional disk space will be used. 95s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed/main ppc64el libc-dev-bin ppc64el 2.41-1ubuntu1 [25.3 kB] 95s Get:2 http://ftpmaster.internal/ubuntu plucky-proposed/main ppc64el libc6-dev ppc64el 2.41-1ubuntu1 [2046 kB] 95s Get:3 http://ftpmaster.internal/ubuntu plucky-proposed/main ppc64el locales all 2.41-1ubuntu1 [4246 kB] 96s Get:4 http://ftpmaster.internal/ubuntu plucky-proposed/main ppc64el libc6 ppc64el 2.41-1ubuntu1 [3243 kB] 96s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/main ppc64el libc-bin ppc64el 2.41-1ubuntu1 [742 kB] 96s Get:6 http://ftpmaster.internal/ubuntu plucky-proposed/main ppc64el iproute2 ppc64el 6.13.0-1ubuntu1 [1419 kB] 96s Preconfiguring packages ... 96s Fetched 11.7 MB in 1s (10.8 MB/s) 96s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 106311 files and directories currently installed.) 96s Preparing to unpack .../libc-dev-bin_2.41-1ubuntu1_ppc64el.deb ... 96s Unpacking libc-dev-bin (2.41-1ubuntu1) over (2.40-4ubuntu1) ... 96s Preparing to unpack .../libc6-dev_2.41-1ubuntu1_ppc64el.deb ... 96s Unpacking libc6-dev:ppc64el (2.41-1ubuntu1) over (2.40-4ubuntu1) ... 96s Preparing to unpack .../locales_2.41-1ubuntu1_all.deb ... 96s Unpacking locales (2.41-1ubuntu1) over (2.40-4ubuntu1) ... 97s Preparing to unpack .../libc6_2.41-1ubuntu1_ppc64el.deb ... 97s Checking for services that may need to be restarted... 97s Checking init scripts... 97s Checking for services that may need to be restarted... 97s Checking init scripts... 97s Stopping some services possibly affected by the upgrade (will be restarted later): 97s cron: stopping...done. 97s 97s Unpacking libc6:ppc64el (2.41-1ubuntu1) over (2.40-4ubuntu1) ... 97s Setting up libc6:ppc64el (2.41-1ubuntu1) ... 97s Checking for services that may need to be restarted... 97s Checking init scripts... 97s Restarting services possibly affected by the upgrade: 97s cron: restarting...done. 97s 97s Services restarted successfully. 98s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 106312 files and directories currently installed.) 98s Preparing to unpack .../libc-bin_2.41-1ubuntu1_ppc64el.deb ... 98s Unpacking libc-bin (2.41-1ubuntu1) over (2.40-4ubuntu1) ... 98s Setting up libc-bin (2.41-1ubuntu1) ... 98s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 106312 files and directories currently installed.) 98s Preparing to unpack .../iproute2_6.13.0-1ubuntu1_ppc64el.deb ... 98s Unpacking iproute2 (6.13.0-1ubuntu1) over (6.10.0-2ubuntu1) ... 98s Setting up iproute2 (6.13.0-1ubuntu1) ... 98s Setting up locales (2.41-1ubuntu1) ... 98s Installing new version of config file /etc/locale.alias ... 99s Generating locales (this might take a while)... 100s en_US.UTF-8... done 100s Generation complete. 100s Setting up libc-dev-bin (2.41-1ubuntu1) ... 100s Setting up libc6-dev:ppc64el (2.41-1ubuntu1) ... 100s Processing triggers for man-db (2.13.0-1) ... 102s Processing triggers for systemd (257.2-3ubuntu1) ... 103s Reading package lists... 103s Building dependency tree... 103s Reading state information... 103s Starting pkgProblemResolver with broken count: 0 103s Starting 2 pkgProblemResolver with broken count: 0 103s Done 104s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 106s autopkgtest [05:41:43]: testbed running kernel: Linux 6.12.0-15-generic #15-Ubuntu SMP Tue Feb 4 16:32:08 UTC 2025 106s autopkgtest [05:41:43]: @@@@@@@@@@@@@@@@@@@@ apt-source pairtools 109s Get:1 http://ftpmaster.internal/ubuntu plucky/universe pairtools 1.1.2-1 (dsc) [2470 B] 109s Get:2 http://ftpmaster.internal/ubuntu plucky/universe pairtools 1.1.2-1 (tar) [1419 kB] 109s Get:3 http://ftpmaster.internal/ubuntu plucky/universe pairtools 1.1.2-1 (diff) [7580 B] 109s gpgv: Signature made Sat Dec 21 20:37:34 2024 UTC 109s gpgv: using RSA key 8F6DE104377F3B11E741748731F3144544A1741A 109s gpgv: issuer "tchet@debian.org" 109s gpgv: Can't check signature: No public key 109s dpkg-source: warning: cannot verify inline signature for ./pairtools_1.1.2-1.dsc: no acceptable signature found 109s autopkgtest [05:41:46]: testing package pairtools version 1.1.2-1 110s autopkgtest [05:41:47]: build not needed 110s autopkgtest [05:41:47]: test upstream-tests: preparing testbed 111s Reading package lists... 111s Building dependency tree... 111s Reading state information... 111s Starting pkgProblemResolver with broken count: 0 111s Starting 2 pkgProblemResolver with broken count: 0 111s Done 111s The following NEW packages will be installed: 111s blt fontconfig-config fonts-dejavu-core fonts-dejavu-mono fonts-lyx libblas3 111s libdeflate0 libfontconfig1 libgfortran5 libgomp1 libgraphite2-3 111s libharfbuzz0b libhts3t64 libhtscodecs2 libimagequant0 libjbig0 111s libjpeg-turbo8 libjpeg8 libjs-jquery libjs-jquery-ui liblapack3 liblbfgsb0 111s liblcms2-2 liblerc4 libopenjp2-7 libqhull-r8.0 libraqm0 libsharpyuv0 111s libtcl8.6 libtiff6 libtk8.6 libwebp7 libwebpdemux2 libwebpmux3 libxft2 111s libxrender1 libxslt1.1 libxss1 python-is-python3 python-matplotlib-data 111s python3-bioframe python3-brotli python3-click python3-contourpy 111s python3-cycler python3-dateutil python3-decorator python3-fonttools 111s python3-fs python3-iniconfig python3-kiwisolver python3-lxml python3-lz4 111s python3-matplotlib python3-mpmath python3-numpy python3-packaging 111s python3-pairtools python3-pandas python3-pandas-lib python3-pil 111s python3-pil.imagetk python3-platformdirs python3-pluggy python3-pysam 111s python3-pytest python3-pytz python3-scipy python3-standard-pipes 111s python3-sympy python3-tk python3-tz python3-ufolib2 python3-unicodedata2 111s python3.12-tk python3.13-tk tk8.6-blt2.5 unicode-data x11-common 111s 0 upgraded, 79 newly installed, 0 to remove and 0 not upgraded. 111s Need to get 83.5 MB of archives. 111s After this operation, 478 MB of additional disk space will be used. 111s Get:1 http://ftpmaster.internal/ubuntu plucky/main ppc64el libtcl8.6 ppc64el 8.6.16+dfsg-1 [1201 kB] 112s Get:2 http://ftpmaster.internal/ubuntu plucky/main ppc64el fonts-dejavu-mono all 2.37-8 [502 kB] 112s Get:3 http://ftpmaster.internal/ubuntu plucky/main ppc64el fonts-dejavu-core all 2.37-8 [835 kB] 112s Get:4 http://ftpmaster.internal/ubuntu plucky/main ppc64el fontconfig-config ppc64el 2.15.0-1.1ubuntu2 [37.4 kB] 112s Get:5 http://ftpmaster.internal/ubuntu plucky/main ppc64el libfontconfig1 ppc64el 2.15.0-1.1ubuntu2 [190 kB] 112s Get:6 http://ftpmaster.internal/ubuntu plucky/main ppc64el libxrender1 ppc64el 1:0.9.10-1.1build1 [23.1 kB] 112s Get:7 http://ftpmaster.internal/ubuntu plucky/main ppc64el libxft2 ppc64el 2.3.6-1build1 [61.5 kB] 112s Get:8 http://ftpmaster.internal/ubuntu plucky/main ppc64el x11-common all 1:7.7+23ubuntu3 [21.7 kB] 112s Get:9 http://ftpmaster.internal/ubuntu plucky/main ppc64el libxss1 ppc64el 1:1.2.3-1build3 [7980 B] 112s Get:10 http://ftpmaster.internal/ubuntu plucky/main ppc64el libtk8.6 ppc64el 8.6.16-1 [946 kB] 112s Get:11 http://ftpmaster.internal/ubuntu plucky/main ppc64el tk8.6-blt2.5 ppc64el 2.5.3+dfsg-7build1 [784 kB] 112s Get:12 http://ftpmaster.internal/ubuntu plucky/main ppc64el blt ppc64el 2.5.3+dfsg-7build1 [4840 B] 112s Get:13 http://ftpmaster.internal/ubuntu plucky/universe ppc64el fonts-lyx all 2.4.3-1 [171 kB] 112s Get:14 http://ftpmaster.internal/ubuntu plucky/main ppc64el libblas3 ppc64el 3.12.1-2 [239 kB] 112s Get:15 http://ftpmaster.internal/ubuntu plucky/main ppc64el libdeflate0 ppc64el 1.23-1 [63.4 kB] 112s Get:16 http://ftpmaster.internal/ubuntu plucky/main ppc64el libgfortran5 ppc64el 14.2.0-17ubuntu1 [571 kB] 112s Get:17 http://ftpmaster.internal/ubuntu plucky/main ppc64el libgomp1 ppc64el 14.2.0-17ubuntu1 [161 kB] 112s Get:18 http://ftpmaster.internal/ubuntu plucky/main ppc64el libgraphite2-3 ppc64el 1.3.14-2ubuntu1 [84.6 kB] 112s Get:19 http://ftpmaster.internal/ubuntu plucky/main ppc64el libharfbuzz0b ppc64el 10.2.0-1 [598 kB] 112s Get:20 http://ftpmaster.internal/ubuntu plucky/universe ppc64el libhtscodecs2 ppc64el 1.6.1-1 [113 kB] 112s Get:21 http://ftpmaster.internal/ubuntu plucky/universe ppc64el libhts3t64 ppc64el 1.21+ds-1 [585 kB] 113s Get:22 http://ftpmaster.internal/ubuntu plucky/main ppc64el libimagequant0 ppc64el 2.18.0-1build1 [43.2 kB] 113s Get:23 http://ftpmaster.internal/ubuntu plucky/main ppc64el libjpeg-turbo8 ppc64el 2.1.5-3ubuntu2 [215 kB] 113s Get:24 http://ftpmaster.internal/ubuntu plucky/main ppc64el libjpeg8 ppc64el 8c-2ubuntu11 [2148 B] 113s Get:25 http://ftpmaster.internal/ubuntu plucky/main ppc64el libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [328 kB] 113s Get:26 http://ftpmaster.internal/ubuntu plucky/universe ppc64el libjs-jquery-ui all 1.13.2+dfsg-1 [252 kB] 113s Get:27 http://ftpmaster.internal/ubuntu plucky/main ppc64el liblapack3 ppc64el 3.12.1-2 [2813 kB] 113s Get:28 http://ftpmaster.internal/ubuntu plucky/universe ppc64el liblbfgsb0 ppc64el 3.0+dfsg.4-1build1 [33.0 kB] 113s Get:29 http://ftpmaster.internal/ubuntu plucky/main ppc64el liblcms2-2 ppc64el 2.16-2 [243 kB] 113s Get:30 http://ftpmaster.internal/ubuntu plucky/main ppc64el liblerc4 ppc64el 4.0.0+ds-5ubuntu1 [298 kB] 113s Get:31 http://ftpmaster.internal/ubuntu plucky/universe ppc64el libqhull-r8.0 ppc64el 2020.2-6build1 [225 kB] 113s Get:32 http://ftpmaster.internal/ubuntu plucky/main ppc64el libraqm0 ppc64el 0.10.2-1 [19.2 kB] 113s Get:33 http://ftpmaster.internal/ubuntu plucky/main ppc64el libsharpyuv0 ppc64el 1.5.0-0.1 [22.3 kB] 113s Get:34 http://ftpmaster.internal/ubuntu plucky/main ppc64el libjbig0 ppc64el 2.1-6.1ubuntu2 [35.9 kB] 113s Get:35 http://ftpmaster.internal/ubuntu plucky/main ppc64el libwebp7 ppc64el 1.5.0-0.1 [315 kB] 113s Get:36 http://ftpmaster.internal/ubuntu plucky/main ppc64el libtiff6 ppc64el 4.5.1+git230720-4ubuntu4 [272 kB] 113s Get:37 http://ftpmaster.internal/ubuntu plucky/main ppc64el libwebpdemux2 ppc64el 1.5.0-0.1 [14.6 kB] 113s Get:38 http://ftpmaster.internal/ubuntu plucky/main ppc64el libwebpmux3 ppc64el 1.5.0-0.1 [31.1 kB] 113s Get:39 http://ftpmaster.internal/ubuntu plucky/main ppc64el libxslt1.1 ppc64el 1.1.39-0exp1ubuntu2 [191 kB] 113s Get:40 http://ftpmaster.internal/ubuntu plucky/main ppc64el python-is-python3 all 3.11.4-1 [2684 B] 113s Get:41 http://ftpmaster.internal/ubuntu plucky/universe ppc64el python-matplotlib-data all 3.8.3-3ubuntu2 [2929 kB] 113s Get:42 http://ftpmaster.internal/ubuntu plucky/main ppc64el python3-dateutil all 2.9.0-3 [80.2 kB] 113s Get:43 http://ftpmaster.internal/ubuntu plucky/main ppc64el libopenjp2-7 ppc64el 2.5.0-2ubuntu3 [247 kB] 113s Get:44 http://ftpmaster.internal/ubuntu plucky/main ppc64el python3-pil ppc64el 11.1.0-5 [618 kB] 113s Get:45 http://ftpmaster.internal/ubuntu plucky/main ppc64el python3.12-tk ppc64el 3.12.9-1 [116 kB] 113s Get:46 http://ftpmaster.internal/ubuntu plucky/main ppc64el python3.13-tk ppc64el 3.13.2-1 [107 kB] 113s Get:47 http://ftpmaster.internal/ubuntu plucky/main ppc64el python3-tk ppc64el 3.13.1-1 [9772 B] 113s Get:48 http://ftpmaster.internal/ubuntu plucky/universe ppc64el python3-pil.imagetk ppc64el 11.1.0-5 [10.4 kB] 113s Get:49 http://ftpmaster.internal/ubuntu plucky/main ppc64el python3-numpy ppc64el 1:1.26.4+ds-13 [5146 kB] 114s Get:50 http://ftpmaster.internal/ubuntu plucky/universe ppc64el python3-contourpy ppc64el 1.3.1-1 [260 kB] 114s Get:51 http://ftpmaster.internal/ubuntu plucky/universe ppc64el python3-cycler all 0.12.1-1 [9716 B] 114s Get:52 http://ftpmaster.internal/ubuntu plucky/universe ppc64el python3-brotli ppc64el 1.1.0-2build3 [423 kB] 114s Get:53 http://ftpmaster.internal/ubuntu plucky/main ppc64el python3-pytz all 2025.1-3 [162 kB] 114s Get:54 http://ftpmaster.internal/ubuntu plucky/main ppc64el python3-tz all 2025.1-3 [1866 B] 114s Get:55 http://ftpmaster.internal/ubuntu plucky/main ppc64el python3-platformdirs all 4.3.6-1 [16.8 kB] 114s Get:56 http://ftpmaster.internal/ubuntu plucky/universe ppc64el python3-fs all 2.4.16-6 [90.7 kB] 114s Get:57 http://ftpmaster.internal/ubuntu plucky/main ppc64el python3-lxml ppc64el 5.3.1-1 [1752 kB] 114s Get:58 http://ftpmaster.internal/ubuntu plucky/universe ppc64el python3-lz4 ppc64el 4.4.0+dfsg-1 [28.3 kB] 114s Get:59 http://ftpmaster.internal/ubuntu plucky/main ppc64el python3-decorator all 5.1.1-5 [10.1 kB] 114s Get:60 http://ftpmaster.internal/ubuntu plucky/universe ppc64el python3-scipy ppc64el 1.14.1-4ubuntu1 [22.7 MB] 114s Get:61 http://ftpmaster.internal/ubuntu plucky/universe ppc64el python3-mpmath all 1.3.0-1 [425 kB] 114s Get:62 http://ftpmaster.internal/ubuntu plucky/universe ppc64el python3-sympy all 1.13.3-1 [4228 kB] 115s Get:63 http://ftpmaster.internal/ubuntu plucky/universe ppc64el python3-ufolib2 all 0.17.0+dfsg1-1 [33.5 kB] 115s Get:64 http://ftpmaster.internal/ubuntu plucky/universe ppc64el python3-unicodedata2 ppc64el 15.1.0+ds-1build2 [361 kB] 115s Get:65 http://ftpmaster.internal/ubuntu plucky/universe ppc64el unicode-data all 15.1.0-1 [8878 kB] 115s Get:66 http://ftpmaster.internal/ubuntu plucky/universe ppc64el python3-fonttools ppc64el 4.55.3-2 [1722 kB] 115s Get:67 http://ftpmaster.internal/ubuntu plucky/universe ppc64el python3-kiwisolver ppc64el 1.4.7-3 [73.2 kB] 115s Get:68 http://ftpmaster.internal/ubuntu plucky/main ppc64el python3-packaging all 24.2-1 [51.5 kB] 115s Get:69 http://ftpmaster.internal/ubuntu plucky/universe ppc64el python3-matplotlib ppc64el 3.8.3-3ubuntu2 [4709 kB] 115s Get:70 http://ftpmaster.internal/ubuntu plucky/universe ppc64el python3-pandas-lib ppc64el 2.2.3+dfsg-8 [7343 kB] 115s Get:71 http://ftpmaster.internal/ubuntu plucky/universe ppc64el python3-pandas all 2.2.3+dfsg-8 [3112 kB] 116s Get:72 http://ftpmaster.internal/ubuntu plucky/universe ppc64el python3-bioframe all 0.4.1-1 [76.1 kB] 116s Get:73 http://ftpmaster.internal/ubuntu plucky/main ppc64el python3-click all 8.1.8-1 [79.8 kB] 116s Get:74 http://ftpmaster.internal/ubuntu plucky/universe ppc64el python3-iniconfig all 1.1.1-2 [6024 B] 116s Get:75 http://ftpmaster.internal/ubuntu plucky/universe ppc64el python3-standard-pipes all 3.13.0-5 [7414 B] 116s Get:76 http://ftpmaster.internal/ubuntu plucky/universe ppc64el python3-pysam ppc64el 0.23.0+ds-1 [4584 kB] 116s Get:77 http://ftpmaster.internal/ubuntu plucky/universe ppc64el python3-pairtools ppc64el 1.1.2-1 [302 kB] 116s Get:78 http://ftpmaster.internal/ubuntu plucky/universe ppc64el python3-pluggy all 1.5.0-1 [21.0 kB] 116s Get:79 http://ftpmaster.internal/ubuntu plucky/universe ppc64el python3-pytest all 8.3.4-1 [252 kB] 116s Fetched 83.5 MB in 5s (18.5 MB/s) 116s Selecting previously unselected package libtcl8.6:ppc64el. 116s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 106313 files and directories currently installed.) 116s Preparing to unpack .../00-libtcl8.6_8.6.16+dfsg-1_ppc64el.deb ... 116s Unpacking libtcl8.6:ppc64el (8.6.16+dfsg-1) ... 116s Selecting previously unselected package fonts-dejavu-mono. 116s Preparing to unpack .../01-fonts-dejavu-mono_2.37-8_all.deb ... 116s Unpacking fonts-dejavu-mono (2.37-8) ... 116s Selecting previously unselected package fonts-dejavu-core. 116s Preparing to unpack .../02-fonts-dejavu-core_2.37-8_all.deb ... 116s Unpacking fonts-dejavu-core (2.37-8) ... 116s Selecting previously unselected package fontconfig-config. 116s Preparing to unpack .../03-fontconfig-config_2.15.0-1.1ubuntu2_ppc64el.deb ... 116s Unpacking fontconfig-config (2.15.0-1.1ubuntu2) ... 117s Selecting previously unselected package libfontconfig1:ppc64el. 117s Preparing to unpack .../04-libfontconfig1_2.15.0-1.1ubuntu2_ppc64el.deb ... 117s Unpacking libfontconfig1:ppc64el (2.15.0-1.1ubuntu2) ... 117s Selecting previously unselected package libxrender1:ppc64el. 117s Preparing to unpack .../05-libxrender1_1%3a0.9.10-1.1build1_ppc64el.deb ... 117s Unpacking libxrender1:ppc64el (1:0.9.10-1.1build1) ... 117s Selecting previously unselected package libxft2:ppc64el. 117s Preparing to unpack .../06-libxft2_2.3.6-1build1_ppc64el.deb ... 117s Unpacking libxft2:ppc64el (2.3.6-1build1) ... 117s Selecting previously unselected package x11-common. 117s Preparing to unpack .../07-x11-common_1%3a7.7+23ubuntu3_all.deb ... 117s Unpacking x11-common (1:7.7+23ubuntu3) ... 117s Selecting previously unselected package libxss1:ppc64el. 117s Preparing to unpack .../08-libxss1_1%3a1.2.3-1build3_ppc64el.deb ... 117s Unpacking libxss1:ppc64el (1:1.2.3-1build3) ... 117s Selecting previously unselected package libtk8.6:ppc64el. 117s Preparing to unpack .../09-libtk8.6_8.6.16-1_ppc64el.deb ... 117s Unpacking libtk8.6:ppc64el (8.6.16-1) ... 117s Selecting previously unselected package tk8.6-blt2.5. 117s Preparing to unpack .../10-tk8.6-blt2.5_2.5.3+dfsg-7build1_ppc64el.deb ... 117s Unpacking tk8.6-blt2.5 (2.5.3+dfsg-7build1) ... 117s Selecting previously unselected package blt. 117s Preparing to unpack .../11-blt_2.5.3+dfsg-7build1_ppc64el.deb ... 117s Unpacking blt (2.5.3+dfsg-7build1) ... 117s Selecting previously unselected package fonts-lyx. 117s Preparing to unpack .../12-fonts-lyx_2.4.3-1_all.deb ... 117s Unpacking fonts-lyx (2.4.3-1) ... 117s Selecting previously unselected package libblas3:ppc64el. 117s Preparing to unpack .../13-libblas3_3.12.1-2_ppc64el.deb ... 117s Unpacking libblas3:ppc64el (3.12.1-2) ... 117s Selecting previously unselected package libdeflate0:ppc64el. 117s Preparing to unpack .../14-libdeflate0_1.23-1_ppc64el.deb ... 117s Unpacking libdeflate0:ppc64el (1.23-1) ... 117s Selecting previously unselected package libgfortran5:ppc64el. 117s Preparing to unpack .../15-libgfortran5_14.2.0-17ubuntu1_ppc64el.deb ... 117s Unpacking libgfortran5:ppc64el (14.2.0-17ubuntu1) ... 117s Selecting previously unselected package libgomp1:ppc64el. 117s Preparing to unpack .../16-libgomp1_14.2.0-17ubuntu1_ppc64el.deb ... 117s Unpacking libgomp1:ppc64el (14.2.0-17ubuntu1) ... 117s Selecting previously unselected package libgraphite2-3:ppc64el. 117s Preparing to unpack .../17-libgraphite2-3_1.3.14-2ubuntu1_ppc64el.deb ... 117s Unpacking libgraphite2-3:ppc64el (1.3.14-2ubuntu1) ... 117s Selecting previously unselected package libharfbuzz0b:ppc64el. 117s Preparing to unpack .../18-libharfbuzz0b_10.2.0-1_ppc64el.deb ... 117s Unpacking libharfbuzz0b:ppc64el (10.2.0-1) ... 117s Selecting previously unselected package libhtscodecs2:ppc64el. 117s Preparing to unpack .../19-libhtscodecs2_1.6.1-1_ppc64el.deb ... 117s Unpacking libhtscodecs2:ppc64el (1.6.1-1) ... 117s Selecting previously unselected package libhts3t64:ppc64el. 117s Preparing to unpack .../20-libhts3t64_1.21+ds-1_ppc64el.deb ... 117s Unpacking libhts3t64:ppc64el (1.21+ds-1) ... 117s Selecting previously unselected package libimagequant0:ppc64el. 117s Preparing to unpack .../21-libimagequant0_2.18.0-1build1_ppc64el.deb ... 117s Unpacking libimagequant0:ppc64el (2.18.0-1build1) ... 117s Selecting previously unselected package libjpeg-turbo8:ppc64el. 117s Preparing to unpack .../22-libjpeg-turbo8_2.1.5-3ubuntu2_ppc64el.deb ... 117s Unpacking libjpeg-turbo8:ppc64el (2.1.5-3ubuntu2) ... 117s Selecting previously unselected package libjpeg8:ppc64el. 117s Preparing to unpack .../23-libjpeg8_8c-2ubuntu11_ppc64el.deb ... 117s Unpacking libjpeg8:ppc64el (8c-2ubuntu11) ... 117s Selecting previously unselected package libjs-jquery. 117s Preparing to unpack .../24-libjs-jquery_3.6.1+dfsg+~3.5.14-1_all.deb ... 117s Unpacking libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... 117s Selecting previously unselected package libjs-jquery-ui. 117s Preparing to unpack .../25-libjs-jquery-ui_1.13.2+dfsg-1_all.deb ... 117s Unpacking libjs-jquery-ui (1.13.2+dfsg-1) ... 117s Selecting previously unselected package liblapack3:ppc64el. 117s Preparing to unpack .../26-liblapack3_3.12.1-2_ppc64el.deb ... 117s Unpacking liblapack3:ppc64el (3.12.1-2) ... 117s Selecting previously unselected package liblbfgsb0:ppc64el. 117s Preparing to unpack .../27-liblbfgsb0_3.0+dfsg.4-1build1_ppc64el.deb ... 117s Unpacking liblbfgsb0:ppc64el (3.0+dfsg.4-1build1) ... 117s Selecting previously unselected package liblcms2-2:ppc64el. 117s Preparing to unpack .../28-liblcms2-2_2.16-2_ppc64el.deb ... 117s Unpacking liblcms2-2:ppc64el (2.16-2) ... 117s Selecting previously unselected package liblerc4:ppc64el. 117s Preparing to unpack .../29-liblerc4_4.0.0+ds-5ubuntu1_ppc64el.deb ... 117s Unpacking liblerc4:ppc64el (4.0.0+ds-5ubuntu1) ... 117s Selecting previously unselected package libqhull-r8.0:ppc64el. 117s Preparing to unpack .../30-libqhull-r8.0_2020.2-6build1_ppc64el.deb ... 117s Unpacking libqhull-r8.0:ppc64el (2020.2-6build1) ... 117s Selecting previously unselected package libraqm0:ppc64el. 117s Preparing to unpack .../31-libraqm0_0.10.2-1_ppc64el.deb ... 117s Unpacking libraqm0:ppc64el (0.10.2-1) ... 117s Selecting previously unselected package libsharpyuv0:ppc64el. 117s Preparing to unpack .../32-libsharpyuv0_1.5.0-0.1_ppc64el.deb ... 117s Unpacking libsharpyuv0:ppc64el (1.5.0-0.1) ... 117s Selecting previously unselected package libjbig0:ppc64el. 117s Preparing to unpack .../33-libjbig0_2.1-6.1ubuntu2_ppc64el.deb ... 117s Unpacking libjbig0:ppc64el (2.1-6.1ubuntu2) ... 117s Selecting previously unselected package libwebp7:ppc64el. 117s Preparing to unpack .../34-libwebp7_1.5.0-0.1_ppc64el.deb ... 117s Unpacking libwebp7:ppc64el (1.5.0-0.1) ... 117s Selecting previously unselected package libtiff6:ppc64el. 117s Preparing to unpack .../35-libtiff6_4.5.1+git230720-4ubuntu4_ppc64el.deb ... 117s Unpacking libtiff6:ppc64el (4.5.1+git230720-4ubuntu4) ... 117s Selecting previously unselected package libwebpdemux2:ppc64el. 117s Preparing to unpack .../36-libwebpdemux2_1.5.0-0.1_ppc64el.deb ... 117s Unpacking libwebpdemux2:ppc64el (1.5.0-0.1) ... 117s Selecting previously unselected package libwebpmux3:ppc64el. 117s Preparing to unpack .../37-libwebpmux3_1.5.0-0.1_ppc64el.deb ... 117s Unpacking libwebpmux3:ppc64el (1.5.0-0.1) ... 117s Selecting previously unselected package libxslt1.1:ppc64el. 117s Preparing to unpack .../38-libxslt1.1_1.1.39-0exp1ubuntu2_ppc64el.deb ... 117s Unpacking libxslt1.1:ppc64el (1.1.39-0exp1ubuntu2) ... 118s Selecting previously unselected package python-is-python3. 118s Preparing to unpack .../39-python-is-python3_3.11.4-1_all.deb ... 118s Unpacking python-is-python3 (3.11.4-1) ... 118s Selecting previously unselected package python-matplotlib-data. 118s Preparing to unpack .../40-python-matplotlib-data_3.8.3-3ubuntu2_all.deb ... 118s Unpacking python-matplotlib-data (3.8.3-3ubuntu2) ... 118s Selecting previously unselected package python3-dateutil. 118s Preparing to unpack .../41-python3-dateutil_2.9.0-3_all.deb ... 118s Unpacking python3-dateutil (2.9.0-3) ... 118s Selecting previously unselected package libopenjp2-7:ppc64el. 118s Preparing to unpack .../42-libopenjp2-7_2.5.0-2ubuntu3_ppc64el.deb ... 118s Unpacking libopenjp2-7:ppc64el (2.5.0-2ubuntu3) ... 118s Selecting previously unselected package python3-pil:ppc64el. 118s Preparing to unpack .../43-python3-pil_11.1.0-5_ppc64el.deb ... 118s Unpacking python3-pil:ppc64el (11.1.0-5) ... 118s Selecting previously unselected package python3.12-tk. 118s Preparing to unpack .../44-python3.12-tk_3.12.9-1_ppc64el.deb ... 118s Unpacking python3.12-tk (3.12.9-1) ... 118s Selecting previously unselected package python3.13-tk. 118s Preparing to unpack .../45-python3.13-tk_3.13.2-1_ppc64el.deb ... 118s Unpacking python3.13-tk (3.13.2-1) ... 118s Selecting previously unselected package python3-tk:ppc64el. 118s Preparing to unpack .../46-python3-tk_3.13.1-1_ppc64el.deb ... 118s Unpacking python3-tk:ppc64el (3.13.1-1) ... 118s Selecting previously unselected package python3-pil.imagetk:ppc64el. 118s Preparing to unpack .../47-python3-pil.imagetk_11.1.0-5_ppc64el.deb ... 118s Unpacking python3-pil.imagetk:ppc64el (11.1.0-5) ... 118s Selecting previously unselected package python3-numpy. 118s Preparing to unpack .../48-python3-numpy_1%3a1.26.4+ds-13_ppc64el.deb ... 118s Unpacking python3-numpy (1:1.26.4+ds-13) ... 118s Selecting previously unselected package python3-contourpy. 118s Preparing to unpack .../49-python3-contourpy_1.3.1-1_ppc64el.deb ... 118s Unpacking python3-contourpy (1.3.1-1) ... 118s Selecting previously unselected package python3-cycler. 118s Preparing to unpack .../50-python3-cycler_0.12.1-1_all.deb ... 118s Unpacking python3-cycler (0.12.1-1) ... 118s Selecting previously unselected package python3-brotli. 118s Preparing to unpack .../51-python3-brotli_1.1.0-2build3_ppc64el.deb ... 118s Unpacking python3-brotli (1.1.0-2build3) ... 118s Selecting previously unselected package python3-pytz. 118s Preparing to unpack .../52-python3-pytz_2025.1-3_all.deb ... 118s Unpacking python3-pytz (2025.1-3) ... 118s Selecting previously unselected package python3-tz. 118s Preparing to unpack .../53-python3-tz_2025.1-3_all.deb ... 118s Unpacking python3-tz (2025.1-3) ... 118s Selecting previously unselected package python3-platformdirs. 118s Preparing to unpack .../54-python3-platformdirs_4.3.6-1_all.deb ... 118s Unpacking python3-platformdirs (4.3.6-1) ... 118s Selecting previously unselected package python3-fs. 118s Preparing to unpack .../55-python3-fs_2.4.16-6_all.deb ... 118s Unpacking python3-fs (2.4.16-6) ... 118s Selecting previously unselected package python3-lxml:ppc64el. 118s Preparing to unpack .../56-python3-lxml_5.3.1-1_ppc64el.deb ... 118s Unpacking python3-lxml:ppc64el (5.3.1-1) ... 119s Selecting previously unselected package python3-lz4. 119s Preparing to unpack .../57-python3-lz4_4.4.0+dfsg-1_ppc64el.deb ... 119s Unpacking python3-lz4 (4.4.0+dfsg-1) ... 119s Selecting previously unselected package python3-decorator. 119s Preparing to unpack .../58-python3-decorator_5.1.1-5_all.deb ... 119s Unpacking python3-decorator (5.1.1-5) ... 119s Selecting previously unselected package python3-scipy. 119s Preparing to unpack .../59-python3-scipy_1.14.1-4ubuntu1_ppc64el.deb ... 119s Unpacking python3-scipy (1.14.1-4ubuntu1) ... 119s Selecting previously unselected package python3-mpmath. 119s Preparing to unpack .../60-python3-mpmath_1.3.0-1_all.deb ... 119s Unpacking python3-mpmath (1.3.0-1) ... 119s Selecting previously unselected package python3-sympy. 119s Preparing to unpack .../61-python3-sympy_1.13.3-1_all.deb ... 119s Unpacking python3-sympy (1.13.3-1) ... 120s Selecting previously unselected package python3-ufolib2. 120s Preparing to unpack .../62-python3-ufolib2_0.17.0+dfsg1-1_all.deb ... 120s Unpacking python3-ufolib2 (0.17.0+dfsg1-1) ... 120s Selecting previously unselected package python3-unicodedata2. 120s Preparing to unpack .../63-python3-unicodedata2_15.1.0+ds-1build2_ppc64el.deb ... 120s Unpacking python3-unicodedata2 (15.1.0+ds-1build2) ... 120s Selecting previously unselected package unicode-data. 120s Preparing to unpack .../64-unicode-data_15.1.0-1_all.deb ... 120s Unpacking unicode-data (15.1.0-1) ... 120s Selecting previously unselected package python3-fonttools. 120s Preparing to unpack .../65-python3-fonttools_4.55.3-2_ppc64el.deb ... 120s Unpacking python3-fonttools (4.55.3-2) ... 120s Selecting previously unselected package python3-kiwisolver. 120s Preparing to unpack .../66-python3-kiwisolver_1.4.7-3_ppc64el.deb ... 120s Unpacking python3-kiwisolver (1.4.7-3) ... 120s Selecting previously unselected package python3-packaging. 120s Preparing to unpack .../67-python3-packaging_24.2-1_all.deb ... 120s Unpacking python3-packaging (24.2-1) ... 120s Selecting previously unselected package python3-matplotlib. 120s Preparing to unpack .../68-python3-matplotlib_3.8.3-3ubuntu2_ppc64el.deb ... 120s Unpacking python3-matplotlib (3.8.3-3ubuntu2) ... 120s Selecting previously unselected package python3-pandas-lib:ppc64el. 120s Preparing to unpack .../69-python3-pandas-lib_2.2.3+dfsg-8_ppc64el.deb ... 120s Unpacking python3-pandas-lib:ppc64el (2.2.3+dfsg-8) ... 121s Selecting previously unselected package python3-pandas. 121s Preparing to unpack .../70-python3-pandas_2.2.3+dfsg-8_all.deb ... 121s Unpacking python3-pandas (2.2.3+dfsg-8) ... 121s Selecting previously unselected package python3-bioframe. 121s Preparing to unpack .../71-python3-bioframe_0.4.1-1_all.deb ... 121s Unpacking python3-bioframe (0.4.1-1) ... 121s Selecting previously unselected package python3-click. 121s Preparing to unpack .../72-python3-click_8.1.8-1_all.deb ... 121s Unpacking python3-click (8.1.8-1) ... 121s Selecting previously unselected package python3-iniconfig. 121s Preparing to unpack .../73-python3-iniconfig_1.1.1-2_all.deb ... 121s Unpacking python3-iniconfig (1.1.1-2) ... 121s Selecting previously unselected package python3-standard-pipes. 121s Preparing to unpack .../74-python3-standard-pipes_3.13.0-5_all.deb ... 121s Unpacking python3-standard-pipes (3.13.0-5) ... 121s Selecting previously unselected package python3-pysam. 121s Preparing to unpack .../75-python3-pysam_0.23.0+ds-1_ppc64el.deb ... 121s Unpacking python3-pysam (0.23.0+ds-1) ... 121s Selecting previously unselected package python3-pairtools. 121s Preparing to unpack .../76-python3-pairtools_1.1.2-1_ppc64el.deb ... 121s Unpacking python3-pairtools (1.1.2-1) ... 121s Selecting previously unselected package python3-pluggy. 121s Preparing to unpack .../77-python3-pluggy_1.5.0-1_all.deb ... 121s Unpacking python3-pluggy (1.5.0-1) ... 121s Selecting previously unselected package python3-pytest. 121s Preparing to unpack .../78-python3-pytest_8.3.4-1_all.deb ... 121s Unpacking python3-pytest (8.3.4-1) ... 121s Setting up libhtscodecs2:ppc64el (1.6.1-1) ... 121s Setting up libgraphite2-3:ppc64el (1.3.14-2ubuntu1) ... 121s Setting up liblcms2-2:ppc64el (2.16-2) ... 121s Setting up python3-iniconfig (1.1.1-2) ... 121s Setting up libsharpyuv0:ppc64el (1.5.0-0.1) ... 121s Setting up liblerc4:ppc64el (4.0.0+ds-5ubuntu1) ... 121s Setting up libxrender1:ppc64el (1:0.9.10-1.1build1) ... 121s Setting up python3-standard-pipes (3.13.0-5) ... 122s Setting up python3-lz4 (4.4.0+dfsg-1) ... 122s Setting up python3-unicodedata2 (15.1.0+ds-1build2) ... 122s Setting up fonts-lyx (2.4.3-1) ... 122s Setting up x11-common (1:7.7+23ubuntu3) ... 122s Setting up libdeflate0:ppc64el (1.23-1) ... 122s Setting up libqhull-r8.0:ppc64el (2020.2-6build1) ... 122s Setting up python3-pytz (2025.1-3) ... 122s Setting up libgomp1:ppc64el (14.2.0-17ubuntu1) ... 122s Setting up python3-click (8.1.8-1) ... 123s Setting up libjbig0:ppc64el (2.1-6.1ubuntu2) ... 123s Setting up python3-platformdirs (4.3.6-1) ... 123s Setting up python3-tz (2025.1-3) ... 123s Setting up python3-fs (2.4.16-6) ... 123s Setting up unicode-data (15.1.0-1) ... 123s Setting up python3-decorator (5.1.1-5) ... 123s Setting up libblas3:ppc64el (3.12.1-2) ... 123s update-alternatives: using /usr/lib/powerpc64le-linux-gnu/blas/libblas.so.3 to provide /usr/lib/powerpc64le-linux-gnu/libblas.so.3 (libblas.so.3-powerpc64le-linux-gnu) in auto mode 123s Setting up python3-packaging (24.2-1) ... 123s Setting up python3-brotli (1.1.0-2build3) ... 123s Setting up python3-cycler (0.12.1-1) ... 123s Setting up libimagequant0:ppc64el (2.18.0-1build1) ... 123s Setting up fonts-dejavu-mono (2.37-8) ... 123s Setting up python3-kiwisolver (1.4.7-3) ... 124s Setting up libtcl8.6:ppc64el (8.6.16+dfsg-1) ... 124s Setting up fonts-dejavu-core (2.37-8) ... 124s Setting up libjpeg-turbo8:ppc64el (2.1.5-3ubuntu2) ... 124s Setting up libgfortran5:ppc64el (14.2.0-17ubuntu1) ... 124s Setting up python3-pluggy (1.5.0-1) ... 124s Setting up libwebp7:ppc64el (1.5.0-0.1) ... 124s Setting up libxslt1.1:ppc64el (1.1.39-0exp1ubuntu2) ... 124s Setting up libhts3t64:ppc64el (1.21+ds-1) ... 124s Setting up libopenjp2-7:ppc64el (2.5.0-2ubuntu3) ... 124s Setting up libharfbuzz0b:ppc64el (10.2.0-1) ... 124s Setting up python3-dateutil (2.9.0-3) ... 124s Setting up libxss1:ppc64el (1:1.2.3-1build3) ... 124s Setting up libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... 124s Setting up python3-mpmath (1.3.0-1) ... 125s Setting up python-matplotlib-data (3.8.3-3ubuntu2) ... 125s Setting up libwebpmux3:ppc64el (1.5.0-0.1) ... 125s Setting up python-is-python3 (3.11.4-1) ... 125s Setting up libjpeg8:ppc64el (8c-2ubuntu11) ... 125s Setting up python3-sympy (1.13.3-1) ... 131s Setting up liblapack3:ppc64el (3.12.1-2) ... 131s update-alternatives: using /usr/lib/powerpc64le-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/powerpc64le-linux-gnu/liblapack.so.3 (liblapack.so.3-powerpc64le-linux-gnu) in auto mode 131s Setting up python3-pysam (0.23.0+ds-1) ... 131s Setting up fontconfig-config (2.15.0-1.1ubuntu2) ... 131s Setting up python3-pytest (8.3.4-1) ... 132s Setting up libwebpdemux2:ppc64el (1.5.0-0.1) ... 132s Setting up libjs-jquery-ui (1.13.2+dfsg-1) ... 132s Setting up libraqm0:ppc64el (0.10.2-1) ... 132s Setting up python3-numpy (1:1.26.4+ds-13) ... 134s Setting up python3-lxml:ppc64el (5.3.1-1) ... 134s Setting up libtiff6:ppc64el (4.5.1+git230720-4ubuntu4) ... 134s Setting up python3-contourpy (1.3.1-1) ... 134s Setting up libfontconfig1:ppc64el (2.15.0-1.1ubuntu2) ... 134s Setting up liblbfgsb0:ppc64el (3.0+dfsg.4-1build1) ... 134s Setting up libxft2:ppc64el (2.3.6-1build1) ... 134s Setting up python3-scipy (1.14.1-4ubuntu1) ... 138s Setting up libtk8.6:ppc64el (8.6.16-1) ... 138s Setting up python3-pandas-lib:ppc64el (2.2.3+dfsg-8) ... 138s Setting up python3.12-tk (3.12.9-1) ... 138s Setting up python3.13-tk (3.13.2-1) ... 138s Setting up python3-pil:ppc64el (11.1.0-5) ... 139s Setting up python3-pandas (2.2.3+dfsg-8) ... 144s Setting up tk8.6-blt2.5 (2.5.3+dfsg-7build1) ... 144s Setting up blt (2.5.3+dfsg-7build1) ... 144s Setting up python3-tk:ppc64el (3.13.1-1) ... 144s Setting up python3-pil.imagetk:ppc64el (11.1.0-5) ... 144s Setting up python3-fonttools (4.55.3-2) ... 145s Setting up python3-ufolib2 (0.17.0+dfsg1-1) ... 145s Setting up python3-matplotlib (3.8.3-3ubuntu2) ... 147s Setting up python3-bioframe (0.4.1-1) ... 147s Setting up python3-pairtools (1.1.2-1) ... 147s Processing triggers for libc-bin (2.41-1ubuntu1) ... 147s Processing triggers for man-db (2.13.0-1) ... 149s autopkgtest [05:42:26]: test upstream-tests: [----------------------- 149s 149s rm -rf pairtools 149s 149s pytest-3 --ignore=.pc 150s ============================= test session starts ============================== 150s platform linux -- Python 3.13.2, pytest-8.3.4, pluggy-1.5.0 150s rootdir: /tmp/autopkgtest.BLIArF/build.Zfu/src 150s configfile: pytest.ini 150s testpaths: tests 150s plugins: typeguard-4.4.1 150s collected 34 items 150s 156s tests/test_dedup.py . [ 2%] 160s tests/test_filterbycov.py . [ 5%] 161s tests/test_flip.py . [ 8%] 162s tests/test_header.py . [ 11%] 162s tests/test_headerops.py ....... [ 32%] 163s tests/test_markasdup.py . [ 35%] 167s tests/test_merge.py . [ 38%] 170s tests/test_parse.py ... [ 47%] 174s tests/test_parse2.py .... [ 58%] 175s tests/test_restrict.py . [ 61%] 176s tests/test_scaling.py . [ 64%] 185s tests/test_select.py ....... [ 85%] 186s tests/test_sort.py . [ 88%] 187s tests/test_split.py . [ 91%] 194s tests/test_stats.py ... [100%] 194s 194s =============================== warnings summary =============================== 194s ../../../../usr/lib/python3/dist-packages/pairtools/lib/fileio.py:2 194s /usr/lib/python3/dist-packages/pairtools/lib/fileio.py:2: DeprecationWarning: pipes was removed in Python 3.13. Please be aware that you are currently NOT using standard 'pipes', but instead a separately installed 'standard-pipes'. 194s import pipes 194s 194s tests/test_stats.py::test_find_dist_freq_convergence_distance 194s /usr/lib/python3/dist-packages/pairtools/lib/stats.py:466: RuntimeWarning: divide by zero encountered in scalar divide 194s strands: n_cis_pairs / norm_factor 194s 194s tests/test_stats.py::test_find_dist_freq_convergence_distance 194s /usr/lib/python3/dist-packages/pairtools/lib/stats.py:474: RuntimeWarning: divide by zero encountered in scalar divide 194s sum(list(n_cis_pairs_above_convergence_dist.values())) / norm_factor ) 194s 194s tests/test_stats.py::test_find_dist_freq_convergence_distance 194s /usr/lib/python3/dist-packages/pairtools/lib/stats.py:410: RuntimeWarning: invalid value encountered in divide 194s np.abs(dist_freqs_by_strands[strands] - avg_freq_all_strands) 194s 194s tests/test_stats.py::test_find_dist_freq_convergence_distance 194s /usr/lib/python3/dist-packages/pairtools/lib/stats.py:466: RuntimeWarning: invalid value encountered in scalar divide 194s strands: n_cis_pairs / norm_factor 194s 194s tests/test_stats.py::test_find_dist_freq_convergence_distance 194s /usr/lib/python3/dist-packages/pairtools/lib/stats.py:474: RuntimeWarning: invalid value encountered in scalar divide 194s sum(list(n_cis_pairs_above_convergence_dist.values())) / norm_factor ) 194s 194s -- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html 194s ======================= 34 passed, 6 warnings in 44.22s ======================== 194s 194s echo ALL PASS 194s ALL PASS 194s autopkgtest [05:43:11]: test upstream-tests: -----------------------] 194s upstream-tests PASS 194s autopkgtest [05:43:11]: test upstream-tests: - - - - - - - - - - results - - - - - - - - - - 195s autopkgtest [05:43:12]: @@@@@@@@@@@@@@@@@@@@ summary 195s upstream-tests PASS 199s nova [W] Using flock in prodstack6-ppc64el 199s Creating nova instance adt-plucky-ppc64el-pairtools-20250216-053957-juju-7f2275-prod-proposed-migration-environment-2-b1b8936e-291b-46dc-b8ad-64cf84a56e4e from image adt/ubuntu-plucky-ppc64el-server-20250215.img (UUID 6b0563e5-c35c-4c0f-8fb5-aae43570455f)... 199s nova [W] Timed out waiting for ebc81ad2-e8f8-4737-9353-5ecd03ff79b0 to get deleted.