0s autopkgtest [18:45:43]: starting date and time: 2024-11-13 18:45:43+0000 0s autopkgtest [18:45:43]: git checkout: 0acbae0a WIP show VirtSubproc stderr in real-time 0s autopkgtest [18:45:43]: host juju-7f2275-prod-proposed-migration-environment-2; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.1tkj5zb7/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:python3-defaults,src:python3-stdlib-extensions --apt-upgrade mdanalysis --timeout-short=300 --timeout-copy=20000 --timeout-test=20000 --timeout-build=20000 '--env=ADT_TEST_TRIGGERS=python3-defaults/3.12.7-1 python3-stdlib-extensions/3.12.7-1' -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest-big-ppc64el --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-2@bos03-ppc64el-24.secgroup --name adt-plucky-ppc64el-mdanalysis-20241113-182851-juju-7f2275-prod-proposed-migration-environment-2-7d0ccadb-7581-42b2-833b-08a143c42dee --image adt/ubuntu-plucky-ppc64el-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-2 --net-id=net_prod-proposed-migration-ppc64el -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,keyserver.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/ 102s autopkgtest [18:47:25]: testbed dpkg architecture: ppc64el 102s autopkgtest [18:47:25]: testbed apt version: 2.9.8 102s autopkgtest [18:47:25]: @@@@@@@@@@@@@@@@@@@@ test bed setup 103s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease [73.9 kB] 104s Get:2 http://ftpmaster.internal/ubuntu plucky-proposed/universe Sources [971 kB] 104s Get:3 http://ftpmaster.internal/ubuntu plucky-proposed/main Sources [104 kB] 104s Get:4 http://ftpmaster.internal/ubuntu plucky-proposed/restricted Sources [7016 B] 104s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse Sources [17.2 kB] 104s Get:6 http://ftpmaster.internal/ubuntu plucky-proposed/main ppc64el Packages [113 kB] 104s Get:7 http://ftpmaster.internal/ubuntu plucky-proposed/universe ppc64el Packages [672 kB] 104s Get:8 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse ppc64el Packages [20.8 kB] 104s Fetched 1978 kB in 1s (1976 kB/s) 104s Reading package lists... 107s Reading package lists... 107s Building dependency tree... 107s Reading state information... 108s Calculating upgrade... 108s The following NEW packages will be installed: 108s python3.13-gdbm 108s The following packages will be upgraded: 108s libgnutls30t64 libjson-glib-1.0-0 libjson-glib-1.0-common libpython3-stdlib 108s libutempter0 python3 python3-gdbm python3-minimal 108s 8 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. 108s Need to get 1265 kB of archives. 108s After this operation, 141 kB of additional disk space will be used. 108s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed/main ppc64el python3-minimal ppc64el 3.12.7-1 [27.4 kB] 108s Get:2 http://ftpmaster.internal/ubuntu plucky-proposed/main ppc64el python3 ppc64el 3.12.7-1 [24.0 kB] 108s Get:3 http://ftpmaster.internal/ubuntu plucky-proposed/main ppc64el libpython3-stdlib ppc64el 3.12.7-1 [10.0 kB] 108s Get:4 http://ftpmaster.internal/ubuntu plucky/main ppc64el libgnutls30t64 ppc64el 3.8.8-2ubuntu1 [1072 kB] 108s Get:5 http://ftpmaster.internal/ubuntu plucky/main ppc64el python3.13-gdbm ppc64el 3.13.0-2 [31.5 kB] 108s Get:6 http://ftpmaster.internal/ubuntu plucky-proposed/main ppc64el python3-gdbm ppc64el 3.12.7-1 [8640 B] 108s Get:7 http://ftpmaster.internal/ubuntu plucky/main ppc64el libjson-glib-1.0-common all 1.10.0+ds-3 [5586 B] 108s Get:8 http://ftpmaster.internal/ubuntu plucky/main ppc64el libjson-glib-1.0-0 ppc64el 1.10.0+ds-3 [76.0 kB] 108s Get:9 http://ftpmaster.internal/ubuntu plucky/main ppc64el libutempter0 ppc64el 1.2.1-4 [9850 B] 109s Fetched 1265 kB in 1s (2068 kB/s) 109s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 73767 files and directories currently installed.) 109s Preparing to unpack .../python3-minimal_3.12.7-1_ppc64el.deb ... 109s Unpacking python3-minimal (3.12.7-1) over (3.12.6-0ubuntu1) ... 109s Setting up python3-minimal (3.12.7-1) ... 110s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 73767 files and directories currently installed.) 110s Preparing to unpack .../python3_3.12.7-1_ppc64el.deb ... 110s Unpacking python3 (3.12.7-1) over (3.12.6-0ubuntu1) ... 110s Preparing to unpack .../libpython3-stdlib_3.12.7-1_ppc64el.deb ... 110s Unpacking libpython3-stdlib:ppc64el (3.12.7-1) over (3.12.6-0ubuntu1) ... 110s Preparing to unpack .../libgnutls30t64_3.8.8-2ubuntu1_ppc64el.deb ... 110s Unpacking libgnutls30t64:ppc64el (3.8.8-2ubuntu1) over (3.8.6-2ubuntu1) ... 110s Setting up libgnutls30t64:ppc64el (3.8.8-2ubuntu1) ... 110s Selecting previously unselected package python3.13-gdbm. 110s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 73767 files and directories currently installed.) 110s Preparing to unpack .../python3.13-gdbm_3.13.0-2_ppc64el.deb ... 110s Unpacking python3.13-gdbm (3.13.0-2) ... 110s Preparing to unpack .../python3-gdbm_3.12.7-1_ppc64el.deb ... 110s Unpacking python3-gdbm:ppc64el (3.12.7-1) over (3.12.6-1ubuntu1) ... 110s Preparing to unpack .../libjson-glib-1.0-common_1.10.0+ds-3_all.deb ... 110s Unpacking libjson-glib-1.0-common (1.10.0+ds-3) over (1.10.0+ds-2) ... 110s Preparing to unpack .../libjson-glib-1.0-0_1.10.0+ds-3_ppc64el.deb ... 110s Unpacking libjson-glib-1.0-0:ppc64el (1.10.0+ds-3) over (1.10.0+ds-2) ... 110s Preparing to unpack .../libutempter0_1.2.1-4_ppc64el.deb ... 110s Unpacking libutempter0:ppc64el (1.2.1-4) over (1.2.1-3build1) ... 110s Setting up libutempter0:ppc64el (1.2.1-4) ... 110s Setting up libjson-glib-1.0-common (1.10.0+ds-3) ... 110s Setting up python3.13-gdbm (3.13.0-2) ... 110s Setting up libpython3-stdlib:ppc64el (3.12.7-1) ... 110s Setting up python3 (3.12.7-1) ... 110s Setting up libjson-glib-1.0-0:ppc64el (1.10.0+ds-3) ... 110s Setting up python3-gdbm:ppc64el (3.12.7-1) ... 110s Processing triggers for man-db (2.12.1-3) ... 111s Processing triggers for libc-bin (2.40-1ubuntu3) ... 111s Reading package lists... 112s Building dependency tree... 112s Reading state information... 112s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 112s Hit:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease 113s Hit:2 http://ftpmaster.internal/ubuntu plucky InRelease 113s Hit:3 http://ftpmaster.internal/ubuntu plucky-updates InRelease 113s Hit:4 http://ftpmaster.internal/ubuntu plucky-security InRelease 114s Reading package lists... 114s Reading package lists... 114s Building dependency tree... 114s Reading state information... 115s Calculating upgrade... 115s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 115s Reading package lists... 115s Building dependency tree... 115s Reading state information... 116s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 118s autopkgtest [18:47:41]: testbed running kernel: Linux 6.11.0-8-generic #8-Ubuntu SMP Mon Sep 16 13:49:23 UTC 2024 119s autopkgtest [18:47:42]: @@@@@@@@@@@@@@@@@@@@ apt-source mdanalysis 123s Get:1 http://ftpmaster.internal/ubuntu plucky/universe mdanalysis 2.7.0-5 (dsc) [2889 B] 123s Get:2 http://ftpmaster.internal/ubuntu plucky/universe mdanalysis 2.7.0-5 (tar) [47.0 MB] 123s Get:3 http://ftpmaster.internal/ubuntu plucky/universe mdanalysis 2.7.0-5 (diff) [10.9 kB] 123s gpgv: Signature made Sat Aug 10 17:37:57 2024 UTC 123s gpgv: using RSA key 23C9A93E585819E9126D0A36573EF1E4BD5A01FA 123s gpgv: issuer "dparsons@debian.org" 123s gpgv: Can't check signature: No public key 123s dpkg-source: warning: cannot verify inline signature for ./mdanalysis_2.7.0-5.dsc: no acceptable signature found 125s autopkgtest [18:47:48]: testing package mdanalysis version 2.7.0-5 125s autopkgtest [18:47:48]: build not needed 130s autopkgtest [18:47:53]: test test-mdanalysis: preparing testbed 131s Reading package lists... 132s Building dependency tree... 132s Reading state information... 132s Starting pkgProblemResolver with broken count: 0 132s Starting 2 pkgProblemResolver with broken count: 0 132s Done 133s The following additional packages will be installed: 133s autoconf automake autopoint autotools-dev blt build-essential cpp cpp-14 133s cpp-14-powerpc64le-linux-gnu cpp-powerpc64le-linux-gnu cython3 debhelper 133s debugedit dh-autoreconf dh-python dh-strip-nondeterminism docutils-common 133s dwz fontconfig-config fonts-dejavu-core fonts-dejavu-mono fonts-font-awesome 133s fonts-lato fonts-lyx fonts-mathjax fonts-urw-base35 g++ g++-14 133s g++-14-powerpc64le-linux-gnu g++-powerpc64le-linux-gnu gcc gcc-14 133s gcc-14-powerpc64le-linux-gnu gcc-powerpc64le-linux-gnu gettext 133s intltool-debian libaec0 libarchive-zip-perl libasan8 libblas3 libcairo2 133s libcc1-0 libdebhelper-perl libdeflate0 libexpat1-dev 133s libfile-stripnondeterminism-perl libfontconfig1 libfontenc1 libgcc-14-dev 133s libgfortran5 libgomp1 libgraphite2-3 libharfbuzz0b libhdf5-103-1t64 133s libhdf5-hl-100t64 libimagequant0 libisl23 libitm1 libjbig0 libjpeg-turbo8 133s libjpeg8 libjs-jquery libjs-jquery-ui libjs-mathjax libjs-sphinxdoc 133s libjs-underscore libjson-perl liblapack3 liblbfgsb0 liblcms2-2 liblerc4 133s liblsan0 liblzf1 libmpc3 libnetcdf19t64 libopenjp2-7 libpixman-1-0 133s libpython3-all-dev libpython3-dev libpython3.12-dev libpython3.13 133s libpython3.13-dev libpython3.13-minimal libpython3.13-stdlib libqhull-r8.0 133s libquadmath0 libraqm0 libsharpyuv0 libstdc++-14-dev libsz2 libtcl8.6 133s libtiff6 libtk8.6 libtool libtsan2 libubsan1 libwebp7 libwebpdemux2 133s libwebpmux3 libxcb-render0 libxcb-shm0 libxft2 libxrender1 libxslt1.1 133s libxss1 m4 po-debconf pybuild-plugin-pyproject python-matplotlib-data 133s python-mdanalysis-doc python3-alabaster python3-all python3-all-dev 133s python3-appdirs python3-biopython python3-brotli python3-build python3-cairo 133s python3-cftime python3-citeproc python3-contourpy python3-cycler 133s python3-dateutil python3-decorator python3-defusedxml python3-dev 133s python3-docutils python3-duecredit python3-fasteners python3-fonttools 133s python3-freetype python3-fs python3-griddataformats python3-gsd python3-h5py 133s python3-h5py-serial python3-hypothesis python3-imagesize python3-iniconfig 133s python3-installer python3-joblib python3-kiwisolver python3-latexcodec 133s python3-looseversion python3-lxml python3-lz4 python3-matplotlib 133s python3-mda-xdrlib python3-mdanalysis python3-mmtf python3-monotonic 133s python3-mpmath python3-mrcfile python3-msgpack python3-msmb-theme 133s python3-netcdf4 python3-networkx python3-numpy python3-packaging 133s python3-pandas python3-pandas-lib python3-pil python3-pil.imagetk 133s python3-pluggy python3-pybtex python3-pybtex-docutils 133s python3-pyproject-hooks python3-pytest python3-reportlab python3-rlpycairo 133s python3-roman python3-scipy python3-seaborn python3-six python3-sklearn 133s python3-sklearn-lib python3-snowballstemmer python3-sortedcontainers 133s python3-sphinx python3-sphinx-rtd-theme python3-sphinx-sitemap 133s python3-sphinxcontrib.bibtex python3-sphinxcontrib.jquery python3-sympy 133s python3-threadpoolctl python3-tk python3-toml python3-tqdm python3-tz 133s python3-ufolib2 python3-unicodedata2 python3-wheel python3.12-dev 133s python3.12-tk python3.13 python3.13-dev python3.13-minimal python3.13-tk 133s sgml-base sphinx-common sphinx-rtd-theme-common tk8.6-blt2.5 unicode-data 133s w3c-sgml-lib x11-common xfonts-encodings xfonts-utils xml-core zlib1g-dev 133s Suggested packages: 133s autoconf-archive gnu-standards autoconf-doc blt-demo cpp-doc gcc-14-locales 133s cpp-14-doc cython-doc dh-make flit fonts-freefont-otf | fonts-freefont-ttf 133s fonts-texgyre gcc-14-doc gcc-multilib manpages-dev flex bison gdb gcc-doc 133s gdb-powerpc64le-linux-gnu gettext-doc libasprintf-dev libgettextpo-dev 133s libjs-jquery-ui-docs fonts-mathjax-extras fonts-stix libjs-mathjax-doc 133s liblcms2-utils libstdc++-14-doc tcl8.6 tk8.6 libtool-doc gfortran 133s | fortran95-compiler gcj-jdk m4-doc libmail-box-perl bwa clustalo clustalw 133s dialign dssp emboss fasttree mafft muscle3 phylip phyml prank probcons 133s python3-mysqldb python3-rdflib python3-psycopg2 raxml samtools t-coffee wise 133s python3-pip python3-venv python-build-doc python-cycler-doc docutils-doc 133s fonts-linuxlibertine | ttf-linux-libertine texlive-lang-french 133s texlive-latex-base texlive-latex-recommended python-gsd-doc python-h5py-doc 133s python-hypothesis-doc python-installer-doc python-joblib-doc 133s python-latexcodec-doc python-lxml-doc cm-super-minimal dvipng ffmpeg 133s fonts-staypuft ghostscript gir1.2-gtk-3.0 inkscape ipython3 librsvg2-common 133s python-matplotlib-doc python3-cairocffi python3-gi-cairo python3-gobject 133s python3-pyqt5 python3-sip python3-tornado texlive-extra-utils 133s texlive-latex-extra python-mpmath-doc python3-gmpy2 jupyter python3-gdal 133s python3-pydot python3-pygraphviz gfortran python-numpy-doc python-pandas-doc 133s python3-statsmodels python-pil-doc python-pybtex-doc 133s python-pybtex-docutils-doc pdf-viewer python3-egenix-mxtexttools 133s python-reportlab-doc rl-accel rl-renderpm python-scipy-doc python3-dap 133s python-sklearn-doc python3-stemmer python-sortedcontainers-doc dvisvgm 133s fonts-freefont-otf imagemagick-6.q16 latexmk sphinx-doc tex-gyre 133s texlive-fonts-extra texlive-fonts-recommended texlive-plain-generic 133s python-sphinxcontrib.bibtex-doc python-sympy-doc tix python3-tk-dbg 133s python3.13-venv python3.13-doc binfmt-support sgml-base-doc 133s Recommended packages: 133s libarchive-cpio-perl javascript-common libjson-xs-perl libltdl-dev 133s libmail-sendmail-perl python-biopython-doc ncbi-blast+ libpaper-utils 133s python3-click python3-simplejson python3-psutil python3-bs4 133s python3-cssselect python3-html5lib python3-bottleneck python3-numexpr 133s python3-odf python3-openpyxl python3-tables python3-olefile 133s fonts-dejavu-extra isympy-common 133s The following NEW packages will be installed: 133s autoconf automake autopkgtest-satdep autopoint autotools-dev blt 133s build-essential cpp cpp-14 cpp-14-powerpc64le-linux-gnu 133s cpp-powerpc64le-linux-gnu cython3 debhelper debugedit dh-autoreconf 133s dh-python dh-strip-nondeterminism docutils-common dwz fontconfig-config 133s fonts-dejavu-core fonts-dejavu-mono fonts-font-awesome fonts-lato fonts-lyx 133s fonts-mathjax fonts-urw-base35 g++ g++-14 g++-14-powerpc64le-linux-gnu 133s g++-powerpc64le-linux-gnu gcc gcc-14 gcc-14-powerpc64le-linux-gnu 133s gcc-powerpc64le-linux-gnu gettext intltool-debian libaec0 133s libarchive-zip-perl libasan8 libblas3 libcairo2 libcc1-0 libdebhelper-perl 133s libdeflate0 libexpat1-dev libfile-stripnondeterminism-perl libfontconfig1 133s libfontenc1 libgcc-14-dev libgfortran5 libgomp1 libgraphite2-3 libharfbuzz0b 133s libhdf5-103-1t64 libhdf5-hl-100t64 libimagequant0 libisl23 libitm1 libjbig0 133s libjpeg-turbo8 libjpeg8 libjs-jquery libjs-jquery-ui libjs-mathjax 133s libjs-sphinxdoc libjs-underscore libjson-perl liblapack3 liblbfgsb0 133s liblcms2-2 liblerc4 liblsan0 liblzf1 libmpc3 libnetcdf19t64 libopenjp2-7 133s libpixman-1-0 libpython3-all-dev libpython3-dev libpython3.12-dev 133s libpython3.13 libpython3.13-dev libpython3.13-minimal libpython3.13-stdlib 133s libqhull-r8.0 libquadmath0 libraqm0 libsharpyuv0 libstdc++-14-dev libsz2 133s libtcl8.6 libtiff6 libtk8.6 libtool libtsan2 libubsan1 libwebp7 133s libwebpdemux2 libwebpmux3 libxcb-render0 libxcb-shm0 libxft2 libxrender1 133s libxslt1.1 libxss1 m4 po-debconf pybuild-plugin-pyproject 133s python-matplotlib-data python-mdanalysis-doc python3-alabaster python3-all 133s python3-all-dev python3-appdirs python3-biopython python3-brotli 133s python3-build python3-cairo python3-cftime python3-citeproc 133s python3-contourpy python3-cycler python3-dateutil python3-decorator 133s python3-defusedxml python3-dev python3-docutils python3-duecredit 133s python3-fasteners python3-fonttools python3-freetype python3-fs 133s python3-griddataformats python3-gsd python3-h5py python3-h5py-serial 133s python3-hypothesis python3-imagesize python3-iniconfig python3-installer 133s python3-joblib python3-kiwisolver python3-latexcodec python3-looseversion 133s python3-lxml python3-lz4 python3-matplotlib python3-mda-xdrlib 133s python3-mdanalysis python3-mmtf python3-monotonic python3-mpmath 133s python3-mrcfile python3-msgpack python3-msmb-theme python3-netcdf4 133s python3-networkx python3-numpy python3-packaging python3-pandas 133s python3-pandas-lib python3-pil python3-pil.imagetk python3-pluggy 133s python3-pybtex python3-pybtex-docutils python3-pyproject-hooks 133s python3-pytest python3-reportlab python3-rlpycairo python3-roman 133s python3-scipy python3-seaborn python3-six python3-sklearn 133s python3-sklearn-lib python3-snowballstemmer python3-sortedcontainers 133s python3-sphinx python3-sphinx-rtd-theme python3-sphinx-sitemap 133s python3-sphinxcontrib.bibtex python3-sphinxcontrib.jquery python3-sympy 133s python3-threadpoolctl python3-tk python3-toml python3-tqdm python3-tz 133s python3-ufolib2 python3-unicodedata2 python3-wheel python3.12-dev 133s python3.12-tk python3.13 python3.13-dev python3.13-minimal python3.13-tk 133s sgml-base sphinx-common sphinx-rtd-theme-common tk8.6-blt2.5 unicode-data 133s w3c-sgml-lib x11-common xfonts-encodings xfonts-utils xml-core zlib1g-dev 133s 0 upgraded, 210 newly installed, 0 to remove and 0 not upgraded. 133s Need to get 217 MB/217 MB of archives. 133s After this operation, 953 MB of additional disk space will be used. 133s Get:1 /tmp/autopkgtest.vhk5Bq/1-autopkgtest-satdep.deb autopkgtest-satdep ppc64el 0 [1016 B] 133s Get:2 http://ftpmaster.internal/ubuntu plucky/main ppc64el fonts-lato all 2.015-1 [2781 kB] 133s Get:3 http://ftpmaster.internal/ubuntu plucky/main ppc64el libpython3.13-minimal ppc64el 3.13.0-2 [881 kB] 133s Get:4 http://ftpmaster.internal/ubuntu plucky/main ppc64el python3.13-minimal ppc64el 3.13.0-2 [2302 kB] 133s Get:5 http://ftpmaster.internal/ubuntu plucky/main ppc64el sgml-base all 1.31 [11.4 kB] 133s Get:6 http://ftpmaster.internal/ubuntu plucky/main ppc64el m4 ppc64el 1.4.19-4build1 [278 kB] 133s Get:7 http://ftpmaster.internal/ubuntu plucky/main ppc64el autoconf all 2.72-3 [382 kB] 134s Get:8 http://ftpmaster.internal/ubuntu plucky/main ppc64el autotools-dev all 20220109.1 [44.9 kB] 134s Get:9 http://ftpmaster.internal/ubuntu plucky/main ppc64el automake all 1:1.16.5-1.3ubuntu1 [558 kB] 134s Get:10 http://ftpmaster.internal/ubuntu plucky/main ppc64el autopoint all 0.22.5-2 [616 kB] 134s Get:11 http://ftpmaster.internal/ubuntu plucky/main ppc64el libtcl8.6 ppc64el 8.6.15+dfsg-2 [1201 kB] 134s Get:12 http://ftpmaster.internal/ubuntu plucky/main ppc64el fonts-dejavu-mono all 2.37-8 [502 kB] 134s Get:13 http://ftpmaster.internal/ubuntu plucky/main ppc64el fonts-dejavu-core all 2.37-8 [835 kB] 134s Get:14 http://ftpmaster.internal/ubuntu plucky/main ppc64el libfontenc1 ppc64el 1:1.1.8-1build1 [15.8 kB] 134s Get:15 http://ftpmaster.internal/ubuntu plucky/main ppc64el x11-common all 1:7.7+23ubuntu3 [21.7 kB] 134s Get:16 http://ftpmaster.internal/ubuntu plucky/main ppc64el xfonts-encodings all 1:1.0.5-0ubuntu2 [578 kB] 134s Get:17 http://ftpmaster.internal/ubuntu plucky/main ppc64el xfonts-utils ppc64el 1:7.7+7 [114 kB] 134s Get:18 http://ftpmaster.internal/ubuntu plucky/main ppc64el fonts-urw-base35 all 20200910-8 [11.0 MB] 134s Get:19 http://ftpmaster.internal/ubuntu plucky/main ppc64el fontconfig-config ppc64el 2.15.0-1.1ubuntu2 [37.4 kB] 134s Get:20 http://ftpmaster.internal/ubuntu plucky/main ppc64el libfontconfig1 ppc64el 2.15.0-1.1ubuntu2 [190 kB] 134s Get:21 http://ftpmaster.internal/ubuntu plucky/main ppc64el libxrender1 ppc64el 1:0.9.10-1.1build1 [23.1 kB] 134s Get:22 http://ftpmaster.internal/ubuntu plucky/main ppc64el libxft2 ppc64el 2.3.6-1build1 [61.5 kB] 134s Get:23 http://ftpmaster.internal/ubuntu plucky/main ppc64el libxss1 ppc64el 1:1.2.3-1build3 [7980 B] 134s Get:24 http://ftpmaster.internal/ubuntu plucky/main ppc64el libtk8.6 ppc64el 8.6.15-1 [942 kB] 134s Get:25 http://ftpmaster.internal/ubuntu plucky/main ppc64el tk8.6-blt2.5 ppc64el 2.5.3+dfsg-7build1 [784 kB] 134s Get:26 http://ftpmaster.internal/ubuntu plucky/main ppc64el blt ppc64el 2.5.3+dfsg-7build1 [4840 B] 134s Get:27 http://ftpmaster.internal/ubuntu plucky/main ppc64el libisl23 ppc64el 0.27-1 [882 kB] 134s Get:28 http://ftpmaster.internal/ubuntu plucky/main ppc64el libmpc3 ppc64el 1.3.1-1build2 [62.1 kB] 134s Get:29 http://ftpmaster.internal/ubuntu plucky/main ppc64el cpp-14-powerpc64le-linux-gnu ppc64el 14.2.0-8ubuntu1 [10.5 MB] 134s Get:30 http://ftpmaster.internal/ubuntu plucky/main ppc64el cpp-14 ppc64el 14.2.0-8ubuntu1 [1034 B] 134s Get:31 http://ftpmaster.internal/ubuntu plucky/main ppc64el cpp-powerpc64le-linux-gnu ppc64el 4:14.1.0-2ubuntu1 [5456 B] 134s Get:32 http://ftpmaster.internal/ubuntu plucky/main ppc64el cpp ppc64el 4:14.1.0-2ubuntu1 [22.5 kB] 134s Get:33 http://ftpmaster.internal/ubuntu plucky/main ppc64el libcc1-0 ppc64el 14.2.0-8ubuntu1 [48.1 kB] 134s Get:34 http://ftpmaster.internal/ubuntu plucky/main ppc64el libgomp1 ppc64el 14.2.0-8ubuntu1 [161 kB] 134s Get:35 http://ftpmaster.internal/ubuntu plucky/main ppc64el libitm1 ppc64el 14.2.0-8ubuntu1 [31.9 kB] 134s Get:36 http://ftpmaster.internal/ubuntu plucky/main ppc64el libasan8 ppc64el 14.2.0-8ubuntu1 [2945 kB] 134s Get:37 http://ftpmaster.internal/ubuntu plucky/main ppc64el liblsan0 ppc64el 14.2.0-8ubuntu1 [1322 kB] 134s Get:38 http://ftpmaster.internal/ubuntu plucky/main ppc64el libtsan2 ppc64el 14.2.0-8ubuntu1 [2695 kB] 134s Get:39 http://ftpmaster.internal/ubuntu plucky/main ppc64el libubsan1 ppc64el 14.2.0-8ubuntu1 [1191 kB] 135s Get:40 http://ftpmaster.internal/ubuntu plucky/main ppc64el libquadmath0 ppc64el 14.2.0-8ubuntu1 [158 kB] 135s Get:41 http://ftpmaster.internal/ubuntu plucky/main ppc64el libgcc-14-dev ppc64el 14.2.0-8ubuntu1 [1619 kB] 135s Get:42 http://ftpmaster.internal/ubuntu plucky/main ppc64el gcc-14-powerpc64le-linux-gnu ppc64el 14.2.0-8ubuntu1 [20.6 MB] 135s Get:43 http://ftpmaster.internal/ubuntu plucky/main ppc64el gcc-14 ppc64el 14.2.0-8ubuntu1 [528 kB] 135s Get:44 http://ftpmaster.internal/ubuntu plucky/main ppc64el gcc-powerpc64le-linux-gnu ppc64el 4:14.1.0-2ubuntu1 [1222 B] 135s Get:45 http://ftpmaster.internal/ubuntu plucky/main ppc64el gcc ppc64el 4:14.1.0-2ubuntu1 [5006 B] 135s Get:46 http://ftpmaster.internal/ubuntu plucky/main ppc64el libstdc++-14-dev ppc64el 14.2.0-8ubuntu1 [2673 kB] 135s Get:47 http://ftpmaster.internal/ubuntu plucky/main ppc64el g++-14-powerpc64le-linux-gnu ppc64el 14.2.0-8ubuntu1 [12.0 MB] 135s Get:48 http://ftpmaster.internal/ubuntu plucky/main ppc64el g++-14 ppc64el 14.2.0-8ubuntu1 [19.9 kB] 135s Get:49 http://ftpmaster.internal/ubuntu plucky/main ppc64el g++-powerpc64le-linux-gnu ppc64el 4:14.1.0-2ubuntu1 [968 B] 135s Get:50 http://ftpmaster.internal/ubuntu plucky/main ppc64el g++ ppc64el 4:14.1.0-2ubuntu1 [1090 B] 135s Get:51 http://ftpmaster.internal/ubuntu plucky/main ppc64el build-essential ppc64el 12.10ubuntu1 [4936 B] 135s Get:52 http://ftpmaster.internal/ubuntu plucky/universe ppc64el cython3 ppc64el 3.0.11+dfsg-1ubuntu1 [2579 kB] 136s Get:53 http://ftpmaster.internal/ubuntu plucky/main ppc64el libdebhelper-perl all 13.20ubuntu1 [94.2 kB] 136s Get:54 http://ftpmaster.internal/ubuntu plucky/main ppc64el libtool all 2.4.7-7build1 [166 kB] 136s Get:55 http://ftpmaster.internal/ubuntu plucky/main ppc64el dh-autoreconf all 20 [16.1 kB] 136s Get:56 http://ftpmaster.internal/ubuntu plucky/main ppc64el libarchive-zip-perl all 1.68-1 [90.2 kB] 136s Get:57 http://ftpmaster.internal/ubuntu plucky/main ppc64el libfile-stripnondeterminism-perl all 1.14.0-1 [20.1 kB] 136s Get:58 http://ftpmaster.internal/ubuntu plucky/main ppc64el dh-strip-nondeterminism all 1.14.0-1 [5058 B] 136s Get:59 http://ftpmaster.internal/ubuntu plucky/main ppc64el debugedit ppc64el 1:5.1-1 [52.1 kB] 136s Get:60 http://ftpmaster.internal/ubuntu plucky/main ppc64el dwz ppc64el 0.15-1build6 [142 kB] 136s Get:61 http://ftpmaster.internal/ubuntu plucky/main ppc64el gettext ppc64el 0.22.5-2 [1082 kB] 136s Get:62 http://ftpmaster.internal/ubuntu plucky/main ppc64el intltool-debian all 0.35.0+20060710.6 [23.2 kB] 136s Get:63 http://ftpmaster.internal/ubuntu plucky/main ppc64el po-debconf all 1.0.21+nmu1 [233 kB] 136s Get:64 http://ftpmaster.internal/ubuntu plucky/main ppc64el debhelper all 13.20ubuntu1 [893 kB] 136s Get:65 http://ftpmaster.internal/ubuntu plucky/universe ppc64el dh-python all 6.20241024 [112 kB] 136s Get:66 http://ftpmaster.internal/ubuntu plucky/main ppc64el xml-core all 0.19 [20.3 kB] 136s Get:67 http://ftpmaster.internal/ubuntu plucky/main ppc64el docutils-common all 0.21.2+dfsg-2 [131 kB] 136s Get:68 http://ftpmaster.internal/ubuntu plucky/main ppc64el fonts-font-awesome all 5.0.10+really4.7.0~dfsg-4.1 [516 kB] 136s Get:69 http://ftpmaster.internal/ubuntu plucky/universe ppc64el fonts-lyx all 2.4.2.1-1 [171 kB] 136s Get:70 http://ftpmaster.internal/ubuntu plucky/main ppc64el fonts-mathjax all 2.7.9+dfsg-1 [2208 kB] 136s Get:71 http://ftpmaster.internal/ubuntu plucky/universe ppc64el libaec0 ppc64el 1.1.3-1 [30.1 kB] 136s Get:72 http://ftpmaster.internal/ubuntu plucky/main ppc64el libblas3 ppc64el 3.12.0-3build2 [222 kB] 136s Get:73 http://ftpmaster.internal/ubuntu plucky/main ppc64el libpixman-1-0 ppc64el 0.44.0-3 [334 kB] 136s Get:74 http://ftpmaster.internal/ubuntu plucky/main ppc64el libxcb-render0 ppc64el 1.17.0-2 [17.2 kB] 136s Get:75 http://ftpmaster.internal/ubuntu plucky/main ppc64el libxcb-shm0 ppc64el 1.17.0-2 [5980 B] 136s Get:76 http://ftpmaster.internal/ubuntu plucky/main ppc64el libcairo2 ppc64el 1.18.2-2 [747 kB] 136s Get:77 http://ftpmaster.internal/ubuntu plucky/main ppc64el libdeflate0 ppc64el 1.22-1 [63.3 kB] 136s Get:78 http://ftpmaster.internal/ubuntu plucky/main ppc64el libexpat1-dev ppc64el 2.6.2-2 [149 kB] 136s Get:79 http://ftpmaster.internal/ubuntu plucky/main ppc64el libgfortran5 ppc64el 14.2.0-8ubuntu1 [571 kB] 136s Get:80 http://ftpmaster.internal/ubuntu plucky/main ppc64el libgraphite2-3 ppc64el 1.3.14-2ubuntu1 [84.6 kB] 136s Get:81 http://ftpmaster.internal/ubuntu plucky/main ppc64el libharfbuzz0b ppc64el 10.0.1-1 [596 kB] 136s Get:82 http://ftpmaster.internal/ubuntu plucky/universe ppc64el libsz2 ppc64el 1.1.3-1 [5566 B] 136s Get:83 http://ftpmaster.internal/ubuntu plucky/universe ppc64el libhdf5-103-1t64 ppc64el 1.10.10+repack-4ubuntu3 [1387 kB] 136s Get:84 http://ftpmaster.internal/ubuntu plucky/universe ppc64el libhdf5-hl-100t64 ppc64el 1.10.10+repack-4ubuntu3 [71.2 kB] 136s Get:85 http://ftpmaster.internal/ubuntu plucky/main ppc64el libimagequant0 ppc64el 2.18.0-1build1 [43.2 kB] 136s Get:86 http://ftpmaster.internal/ubuntu plucky/main ppc64el libjpeg-turbo8 ppc64el 2.1.5-2ubuntu2 [219 kB] 136s Get:87 http://ftpmaster.internal/ubuntu plucky/main ppc64el libjpeg8 ppc64el 8c-2ubuntu11 [2148 B] 136s Get:88 http://ftpmaster.internal/ubuntu plucky/main ppc64el libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [328 kB] 136s Get:89 http://ftpmaster.internal/ubuntu plucky/universe ppc64el libjs-jquery-ui all 1.13.2+dfsg-1 [252 kB] 136s Get:90 http://ftpmaster.internal/ubuntu plucky/main ppc64el libjs-underscore all 1.13.4~dfsg+~1.11.4-3 [118 kB] 136s Get:91 http://ftpmaster.internal/ubuntu plucky/main ppc64el libjs-sphinxdoc all 7.4.7-4 [158 kB] 136s Get:92 http://ftpmaster.internal/ubuntu plucky/main ppc64el libjson-perl all 4.10000-1 [81.9 kB] 136s Get:93 http://ftpmaster.internal/ubuntu plucky/main ppc64el liblapack3 ppc64el 3.12.0-3build2 [2806 kB] 136s Get:94 http://ftpmaster.internal/ubuntu plucky/universe ppc64el liblbfgsb0 ppc64el 3.0+dfsg.4-1build1 [33.0 kB] 136s Get:95 http://ftpmaster.internal/ubuntu plucky/main ppc64el liblcms2-2 ppc64el 2.16-2 [243 kB] 136s Get:96 http://ftpmaster.internal/ubuntu plucky/main ppc64el liblerc4 ppc64el 4.0.0+ds-4ubuntu2 [270 kB] 136s Get:97 http://ftpmaster.internal/ubuntu plucky/universe ppc64el liblzf1 ppc64el 3.6-4 [7920 B] 136s Get:98 http://ftpmaster.internal/ubuntu plucky/universe ppc64el libnetcdf19t64 ppc64el 1:4.9.2-6ubuntu1 [596 kB] 136s Get:99 http://ftpmaster.internal/ubuntu plucky/main ppc64el zlib1g-dev ppc64el 1:1.3.dfsg+really1.3.1-1ubuntu1 [902 kB] 136s Get:100 http://ftpmaster.internal/ubuntu plucky/main ppc64el libpython3.12-dev ppc64el 3.12.7-3 [6136 kB] 137s Get:101 http://ftpmaster.internal/ubuntu plucky-proposed/main ppc64el libpython3-dev ppc64el 3.12.7-1 [10.3 kB] 137s Get:102 http://ftpmaster.internal/ubuntu plucky/main ppc64el libpython3.13-stdlib ppc64el 3.13.0-2 [2148 kB] 137s Get:103 http://ftpmaster.internal/ubuntu plucky/main ppc64el libpython3.13 ppc64el 3.13.0-2 [2527 kB] 137s Get:104 http://ftpmaster.internal/ubuntu plucky/main ppc64el libpython3.13-dev ppc64el 3.13.0-2 [5958 kB] 138s Get:105 http://ftpmaster.internal/ubuntu plucky-proposed/main ppc64el libpython3-all-dev ppc64el 3.12.7-1 [916 B] 138s Get:106 http://ftpmaster.internal/ubuntu plucky/universe ppc64el libqhull-r8.0 ppc64el 2020.2-6build1 [225 kB] 138s Get:107 http://ftpmaster.internal/ubuntu plucky/main ppc64el libraqm0 ppc64el 0.10.1-1build1 [19.4 kB] 138s Get:108 http://ftpmaster.internal/ubuntu plucky/main ppc64el libsharpyuv0 ppc64el 1.4.0-0.1 [22.0 kB] 138s Get:109 http://ftpmaster.internal/ubuntu plucky/main ppc64el libjbig0 ppc64el 2.1-6.1ubuntu2 [35.9 kB] 138s Get:110 http://ftpmaster.internal/ubuntu plucky/main ppc64el libwebp7 ppc64el 1.4.0-0.1 [309 kB] 138s Get:111 http://ftpmaster.internal/ubuntu plucky/main ppc64el libtiff6 ppc64el 4.5.1+git230720-4ubuntu4 [272 kB] 138s Get:112 http://ftpmaster.internal/ubuntu plucky/main ppc64el libwebpdemux2 ppc64el 1.4.0-0.1 [14.1 kB] 138s Get:113 http://ftpmaster.internal/ubuntu plucky/main ppc64el libwebpmux3 ppc64el 1.4.0-0.1 [31.4 kB] 138s Get:114 http://ftpmaster.internal/ubuntu plucky/main ppc64el libxslt1.1 ppc64el 1.1.39-0exp1ubuntu1 [191 kB] 138s Get:115 http://ftpmaster.internal/ubuntu plucky/main ppc64el python3-packaging all 24.1-1 [41.4 kB] 138s Get:116 http://ftpmaster.internal/ubuntu plucky/universe ppc64el python3-pyproject-hooks all 1.2.0-1 [10.2 kB] 138s Get:117 http://ftpmaster.internal/ubuntu plucky/universe ppc64el python3-toml all 0.10.2-1 [16.5 kB] 138s Get:118 http://ftpmaster.internal/ubuntu plucky/universe ppc64el python3-wheel all 0.44.0-1 [54.2 kB] 138s Get:119 http://ftpmaster.internal/ubuntu plucky/universe ppc64el python3-build all 1.2.2-1 [31.0 kB] 138s Get:120 http://ftpmaster.internal/ubuntu plucky/universe ppc64el python3-installer all 0.7.0+dfsg1-3 [17.4 kB] 138s Get:121 http://ftpmaster.internal/ubuntu plucky/universe ppc64el pybuild-plugin-pyproject all 6.20241024 [1728 B] 138s Get:122 http://ftpmaster.internal/ubuntu plucky/universe ppc64el python-matplotlib-data all 3.8.3-3 [2928 kB] 138s Get:123 http://ftpmaster.internal/ubuntu plucky/main ppc64el libjs-mathjax all 2.7.9+dfsg-1 [5665 kB] 138s Get:124 http://ftpmaster.internal/ubuntu plucky/universe ppc64el python-mdanalysis-doc all 2.7.0-5 [2323 kB] 139s Get:125 http://ftpmaster.internal/ubuntu plucky/main ppc64el python3.13 ppc64el 3.13.0-2 [719 kB] 139s Get:126 http://ftpmaster.internal/ubuntu plucky-proposed/main ppc64el python3-all ppc64el 3.12.7-1 [888 B] 139s Get:127 http://ftpmaster.internal/ubuntu plucky/main ppc64el python3.12-dev ppc64el 3.12.7-3 [505 kB] 139s Get:128 http://ftpmaster.internal/ubuntu plucky-proposed/main ppc64el python3-dev ppc64el 3.12.7-1 [26.7 kB] 139s Get:129 http://ftpmaster.internal/ubuntu plucky/main ppc64el python3.13-dev ppc64el 3.13.0-2 [507 kB] 139s Get:130 http://ftpmaster.internal/ubuntu plucky-proposed/main ppc64el python3-all-dev ppc64el 3.12.7-1 [912 B] 139s Get:131 http://ftpmaster.internal/ubuntu plucky/main ppc64el python3-appdirs all 1.4.4-4 [10.9 kB] 139s Get:132 http://ftpmaster.internal/ubuntu plucky/main ppc64el python3-numpy ppc64el 1:1.26.4+ds-11build1 [4434 kB] 139s Get:133 http://ftpmaster.internal/ubuntu plucky/main ppc64el python3.12-tk ppc64el 3.12.7-3 [116 kB] 139s Get:134 http://ftpmaster.internal/ubuntu plucky/main ppc64el python3.13-tk ppc64el 3.13.0-2 [107 kB] 139s Get:135 http://ftpmaster.internal/ubuntu plucky-proposed/main ppc64el python3-tk ppc64el 3.12.7-1 [9752 B] 139s Get:136 http://ftpmaster.internal/ubuntu plucky/universe ppc64el python3-pil.imagetk ppc64el 10.4.0-1ubuntu1 [9810 B] 139s Get:137 http://ftpmaster.internal/ubuntu plucky/main ppc64el libopenjp2-7 ppc64el 2.5.0-2ubuntu1 [246 kB] 139s Get:138 http://ftpmaster.internal/ubuntu plucky/main ppc64el python3-pil ppc64el 10.4.0-1ubuntu1 [581 kB] 139s Get:139 http://ftpmaster.internal/ubuntu plucky/main ppc64el python3-cairo ppc64el 1.26.1-2 [129 kB] 139s Get:140 http://ftpmaster.internal/ubuntu plucky/universe ppc64el python3-freetype all 2.5.1-1 [92.3 kB] 139s Get:141 http://ftpmaster.internal/ubuntu plucky/universe ppc64el python3-rlpycairo all 0.3.0-3 [9130 B] 139s Get:142 http://ftpmaster.internal/ubuntu plucky/universe ppc64el python3-reportlab all 4.2.5-1 [1107 kB] 139s Get:143 http://ftpmaster.internal/ubuntu plucky/universe ppc64el w3c-sgml-lib all 1.3-3 [280 kB] 139s Get:144 http://ftpmaster.internal/ubuntu plucky/universe ppc64el python3-biopython ppc64el 1.84+dfsg-4 [1738 kB] 139s Get:145 http://ftpmaster.internal/ubuntu plucky/universe ppc64el python3-brotli ppc64el 1.1.0-2build2 [413 kB] 139s Get:146 http://ftpmaster.internal/ubuntu plucky/universe ppc64el python3-cftime ppc64el 1.6.4-1 [224 kB] 139s Get:147 http://ftpmaster.internal/ubuntu plucky/main ppc64el python3-lxml ppc64el 5.3.0-1 [1354 kB] 139s Get:148 http://ftpmaster.internal/ubuntu plucky/universe ppc64el python3-citeproc all 0.6.0-3 [98.4 kB] 139s Get:149 http://ftpmaster.internal/ubuntu plucky/universe ppc64el python3-contourpy ppc64el 1.3.0-2 [217 kB] 139s Get:150 http://ftpmaster.internal/ubuntu plucky/universe ppc64el python3-cycler all 0.12.1-1 [9716 B] 139s Get:151 http://ftpmaster.internal/ubuntu plucky/main ppc64el python3-six all 1.16.0-7 [13.1 kB] 139s Get:152 http://ftpmaster.internal/ubuntu plucky/main ppc64el python3-dateutil all 2.9.0-2 [80.3 kB] 139s Get:153 http://ftpmaster.internal/ubuntu plucky/main ppc64el python3-decorator all 5.1.1-5 [10.1 kB] 139s Get:154 http://ftpmaster.internal/ubuntu plucky/main ppc64el python3-defusedxml all 0.7.1-2 [42.0 kB] 139s Get:155 http://ftpmaster.internal/ubuntu plucky/main ppc64el python3-roman all 4.2-1 [10.0 kB] 139s Get:156 http://ftpmaster.internal/ubuntu plucky/main ppc64el python3-docutils all 0.21.2+dfsg-2 [409 kB] 139s Get:157 http://ftpmaster.internal/ubuntu plucky/universe ppc64el python3-looseversion all 1.3.0-3 [8354 B] 139s Get:158 http://ftpmaster.internal/ubuntu plucky/universe ppc64el python3-duecredit all 0.10.2-2 [66.0 kB] 139s Get:159 http://ftpmaster.internal/ubuntu plucky/main ppc64el python3-monotonic all 1.6-2 [5732 B] 139s Get:160 http://ftpmaster.internal/ubuntu plucky/main ppc64el python3-fasteners all 0.18-2 [12.5 kB] 139s Get:161 http://ftpmaster.internal/ubuntu plucky/universe ppc64el python3-scipy ppc64el 1.13.1-5 [18.3 MB] 140s Get:162 http://ftpmaster.internal/ubuntu plucky/universe ppc64el python3-ufolib2 all 0.16.1+dfsg1-1 [33.4 kB] 140s Get:163 http://ftpmaster.internal/ubuntu plucky/universe ppc64el python3-mpmath all 1.3.0-1 [425 kB] 141s Get:164 http://ftpmaster.internal/ubuntu plucky/universe ppc64el python3-sympy all 1.13.3-1 [4228 kB] 141s Get:165 http://ftpmaster.internal/ubuntu plucky/main ppc64el python3-tz all 2024.1-2 [31.4 kB] 141s Get:166 http://ftpmaster.internal/ubuntu plucky/universe ppc64el python3-fs all 2.4.16-4 [91.3 kB] 141s Get:167 http://ftpmaster.internal/ubuntu plucky/universe ppc64el python3-lz4 ppc64el 4.0.2+dfsg-1build4 [27.8 kB] 141s Get:168 http://ftpmaster.internal/ubuntu plucky/universe ppc64el python3-unicodedata2 ppc64el 15.1.0+ds-1build1 [367 kB] 141s Get:169 http://ftpmaster.internal/ubuntu plucky/universe ppc64el unicode-data all 15.1.0-1 [8878 kB] 141s Get:170 http://ftpmaster.internal/ubuntu plucky/universe ppc64el python3-fonttools ppc64el 4.46.0-1build2 [1473 kB] 141s Get:171 http://ftpmaster.internal/ubuntu plucky/main ppc64el sphinx-rtd-theme-common all 3.0.1+dfsg-1 [1012 kB] 142s Get:172 http://ftpmaster.internal/ubuntu plucky/universe ppc64el python3-mrcfile all 1.5.3-3 [114 kB] 142s Get:173 http://ftpmaster.internal/ubuntu plucky/universe ppc64el python3-griddataformats all 1.0.2-2 [2107 kB] 142s Get:174 http://ftpmaster.internal/ubuntu plucky/universe ppc64el python3-gsd ppc64el 3.3.0-1 [211 kB] 142s Get:175 http://ftpmaster.internal/ubuntu plucky/universe ppc64el python3-h5py-serial ppc64el 3.11.0-5ubuntu1 [1159 kB] 142s Get:176 http://ftpmaster.internal/ubuntu plucky/universe ppc64el python3-h5py all 3.11.0-5ubuntu1 [7974 B] 142s Get:177 http://ftpmaster.internal/ubuntu plucky/main ppc64el python3-sortedcontainers all 2.4.0-2 [27.6 kB] 142s Get:178 http://ftpmaster.internal/ubuntu plucky/universe ppc64el python3-hypothesis all 6.116.0-1 [326 kB] 142s Get:179 http://ftpmaster.internal/ubuntu plucky/main ppc64el python3-imagesize all 1.4.1-1 [6844 B] 142s Get:180 http://ftpmaster.internal/ubuntu plucky/universe ppc64el python3-iniconfig all 1.1.1-2 [6024 B] 142s Get:181 http://ftpmaster.internal/ubuntu plucky/universe ppc64el python3-joblib all 1.3.2-5 [206 kB] 142s Get:182 http://ftpmaster.internal/ubuntu plucky/universe ppc64el python3-kiwisolver ppc64el 1.4.7-2 [59.2 kB] 142s Get:183 http://ftpmaster.internal/ubuntu plucky/universe ppc64el python3-latexcodec all 3.0.0-1 [16.6 kB] 142s Get:184 http://ftpmaster.internal/ubuntu plucky/universe ppc64el python3-matplotlib ppc64el 3.8.3-3 [4610 kB] 142s Get:185 http://ftpmaster.internal/ubuntu plucky/universe ppc64el python3-mda-xdrlib all 0.2.0-3 [11.4 kB] 142s Get:186 http://ftpmaster.internal/ubuntu plucky/main ppc64el python3-msgpack ppc64el 1.0.3-3build2 [86.9 kB] 142s Get:187 http://ftpmaster.internal/ubuntu plucky/universe ppc64el python3-mmtf all 1.1.3-1 [16.2 kB] 142s Get:188 http://ftpmaster.internal/ubuntu plucky/universe ppc64el python3-threadpoolctl all 3.1.0-1 [21.3 kB] 142s Get:189 http://ftpmaster.internal/ubuntu plucky/universe ppc64el python3-tqdm all 4.67.0-1 [91.6 kB] 142s Get:190 http://ftpmaster.internal/ubuntu plucky/universe ppc64el python3-mdanalysis ppc64el 2.7.0-5 [2103 kB] 142s Get:191 http://ftpmaster.internal/ubuntu plucky/main ppc64el sphinx-common all 7.4.7-4 [775 kB] 142s Get:192 http://ftpmaster.internal/ubuntu plucky/main ppc64el python3-alabaster all 0.7.16-0.1 [18.5 kB] 142s Get:193 http://ftpmaster.internal/ubuntu plucky/main ppc64el python3-snowballstemmer all 2.2.0-4build1 [59.8 kB] 142s Get:194 http://ftpmaster.internal/ubuntu plucky/main ppc64el python3-sphinx all 7.4.7-4 [593 kB] 142s Get:195 http://ftpmaster.internal/ubuntu plucky/universe ppc64el python3-sphinxcontrib.jquery all 4.1-5 [6678 B] 142s Get:196 http://ftpmaster.internal/ubuntu plucky/universe ppc64el python3-sphinx-rtd-theme all 3.0.1+dfsg-1 [23.5 kB] 142s Get:197 http://ftpmaster.internal/ubuntu plucky/universe ppc64el python3-msmb-theme all 1.2.0-4 [35.4 kB] 142s Get:198 http://ftpmaster.internal/ubuntu plucky/universe ppc64el python3-netcdf4 ppc64el 1.7.2-1 [635 kB] 142s Get:199 http://ftpmaster.internal/ubuntu plucky/main ppc64el python3-networkx all 3.2.1-4ubuntu1 [11.5 MB] 143s Get:200 http://ftpmaster.internal/ubuntu plucky/universe ppc64el python3-pandas-lib ppc64el 2.2.3+dfsg-5 [4761 kB] 143s Get:201 http://ftpmaster.internal/ubuntu plucky/universe ppc64el python3-pandas all 2.2.3+dfsg-5 [3112 kB] 144s Get:202 http://ftpmaster.internal/ubuntu plucky/universe ppc64el python3-pluggy all 1.5.0-1 [21.0 kB] 144s Get:203 http://ftpmaster.internal/ubuntu plucky/universe ppc64el python3-pybtex all 0.24.0-4 [70.0 kB] 144s Get:204 http://ftpmaster.internal/ubuntu plucky/universe ppc64el python3-pybtex-docutils all 1.0.2-1 [7176 B] 144s Get:205 http://ftpmaster.internal/ubuntu plucky/universe ppc64el python3-pytest all 8.3.3-1 [251 kB] 144s Get:206 http://ftpmaster.internal/ubuntu plucky/universe ppc64el python3-seaborn all 0.13.2-4 [225 kB] 144s Get:207 http://ftpmaster.internal/ubuntu plucky/universe ppc64el python3-sklearn-lib ppc64el 1.4.2+dfsg-6 [3838 kB] 145s Get:208 http://ftpmaster.internal/ubuntu plucky/universe ppc64el python3-sklearn all 1.4.2+dfsg-6 [2257 kB] 145s Get:209 http://ftpmaster.internal/ubuntu plucky/universe ppc64el python3-sphinx-sitemap all 2.6.0-1 [6674 B] 145s Get:210 http://ftpmaster.internal/ubuntu plucky/universe ppc64el python3-sphinxcontrib.bibtex all 2.6.2-1 [25.2 kB] 146s Fetched 217 MB in 12s (17.7 MB/s) 146s Selecting previously unselected package fonts-lato. 146s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 73774 files and directories currently installed.) 146s Preparing to unpack .../000-fonts-lato_2.015-1_all.deb ... 146s Unpacking fonts-lato (2.015-1) ... 146s Selecting previously unselected package libpython3.13-minimal:ppc64el. 146s Preparing to unpack .../001-libpython3.13-minimal_3.13.0-2_ppc64el.deb ... 146s Unpacking libpython3.13-minimal:ppc64el (3.13.0-2) ... 146s Selecting previously unselected package python3.13-minimal. 146s Preparing to unpack .../002-python3.13-minimal_3.13.0-2_ppc64el.deb ... 146s Unpacking python3.13-minimal (3.13.0-2) ... 146s Selecting previously unselected package sgml-base. 146s Preparing to unpack .../003-sgml-base_1.31_all.deb ... 146s Unpacking sgml-base (1.31) ... 146s Selecting previously unselected package m4. 146s Preparing to unpack .../004-m4_1.4.19-4build1_ppc64el.deb ... 146s Unpacking m4 (1.4.19-4build1) ... 146s Selecting previously unselected package autoconf. 146s Preparing to unpack .../005-autoconf_2.72-3_all.deb ... 146s Unpacking autoconf (2.72-3) ... 146s Selecting previously unselected package autotools-dev. 146s Preparing to unpack .../006-autotools-dev_20220109.1_all.deb ... 146s Unpacking autotools-dev (20220109.1) ... 146s Selecting previously unselected package automake. 146s Preparing to unpack .../007-automake_1%3a1.16.5-1.3ubuntu1_all.deb ... 146s Unpacking automake (1:1.16.5-1.3ubuntu1) ... 146s Selecting previously unselected package autopoint. 146s Preparing to unpack .../008-autopoint_0.22.5-2_all.deb ... 146s Unpacking autopoint (0.22.5-2) ... 146s Selecting previously unselected package libtcl8.6:ppc64el. 146s Preparing to unpack .../009-libtcl8.6_8.6.15+dfsg-2_ppc64el.deb ... 146s Unpacking libtcl8.6:ppc64el (8.6.15+dfsg-2) ... 146s Selecting previously unselected package fonts-dejavu-mono. 146s Preparing to unpack .../010-fonts-dejavu-mono_2.37-8_all.deb ... 146s Unpacking fonts-dejavu-mono (2.37-8) ... 146s Selecting previously unselected package fonts-dejavu-core. 146s Preparing to unpack .../011-fonts-dejavu-core_2.37-8_all.deb ... 146s Unpacking fonts-dejavu-core (2.37-8) ... 146s Selecting previously unselected package libfontenc1:ppc64el. 146s Preparing to unpack .../012-libfontenc1_1%3a1.1.8-1build1_ppc64el.deb ... 146s Unpacking libfontenc1:ppc64el (1:1.1.8-1build1) ... 147s Selecting previously unselected package x11-common. 147s Preparing to unpack .../013-x11-common_1%3a7.7+23ubuntu3_all.deb ... 147s Unpacking x11-common (1:7.7+23ubuntu3) ... 147s Selecting previously unselected package xfonts-encodings. 147s Preparing to unpack .../014-xfonts-encodings_1%3a1.0.5-0ubuntu2_all.deb ... 147s Unpacking xfonts-encodings (1:1.0.5-0ubuntu2) ... 147s Selecting previously unselected package xfonts-utils. 147s Preparing to unpack .../015-xfonts-utils_1%3a7.7+7_ppc64el.deb ... 147s Unpacking xfonts-utils (1:7.7+7) ... 147s Selecting previously unselected package fonts-urw-base35. 147s Preparing to unpack .../016-fonts-urw-base35_20200910-8_all.deb ... 147s Unpacking fonts-urw-base35 (20200910-8) ... 147s Selecting previously unselected package fontconfig-config. 147s Preparing to unpack .../017-fontconfig-config_2.15.0-1.1ubuntu2_ppc64el.deb ... 147s Unpacking fontconfig-config (2.15.0-1.1ubuntu2) ... 147s Selecting previously unselected package libfontconfig1:ppc64el. 147s Preparing to unpack .../018-libfontconfig1_2.15.0-1.1ubuntu2_ppc64el.deb ... 147s Unpacking libfontconfig1:ppc64el (2.15.0-1.1ubuntu2) ... 147s Selecting previously unselected package libxrender1:ppc64el. 147s Preparing to unpack .../019-libxrender1_1%3a0.9.10-1.1build1_ppc64el.deb ... 147s Unpacking libxrender1:ppc64el (1:0.9.10-1.1build1) ... 147s Selecting previously unselected package libxft2:ppc64el. 147s Preparing to unpack .../020-libxft2_2.3.6-1build1_ppc64el.deb ... 147s Unpacking libxft2:ppc64el (2.3.6-1build1) ... 147s Selecting previously unselected package libxss1:ppc64el. 147s Preparing to unpack .../021-libxss1_1%3a1.2.3-1build3_ppc64el.deb ... 147s Unpacking libxss1:ppc64el (1:1.2.3-1build3) ... 147s Selecting previously unselected package libtk8.6:ppc64el. 147s Preparing to unpack .../022-libtk8.6_8.6.15-1_ppc64el.deb ... 147s Unpacking libtk8.6:ppc64el (8.6.15-1) ... 147s Selecting previously unselected package tk8.6-blt2.5. 147s Preparing to unpack .../023-tk8.6-blt2.5_2.5.3+dfsg-7build1_ppc64el.deb ... 147s Unpacking tk8.6-blt2.5 (2.5.3+dfsg-7build1) ... 147s Selecting previously unselected package blt. 147s Preparing to unpack .../024-blt_2.5.3+dfsg-7build1_ppc64el.deb ... 147s Unpacking blt (2.5.3+dfsg-7build1) ... 147s Selecting previously unselected package libisl23:ppc64el. 147s Preparing to unpack .../025-libisl23_0.27-1_ppc64el.deb ... 147s Unpacking libisl23:ppc64el (0.27-1) ... 147s Selecting previously unselected package libmpc3:ppc64el. 147s Preparing to unpack .../026-libmpc3_1.3.1-1build2_ppc64el.deb ... 147s Unpacking libmpc3:ppc64el (1.3.1-1build2) ... 147s Selecting previously unselected package cpp-14-powerpc64le-linux-gnu. 147s Preparing to unpack .../027-cpp-14-powerpc64le-linux-gnu_14.2.0-8ubuntu1_ppc64el.deb ... 147s Unpacking cpp-14-powerpc64le-linux-gnu (14.2.0-8ubuntu1) ... 148s Selecting previously unselected package cpp-14. 148s Preparing to unpack .../028-cpp-14_14.2.0-8ubuntu1_ppc64el.deb ... 148s Unpacking cpp-14 (14.2.0-8ubuntu1) ... 148s Selecting previously unselected package cpp-powerpc64le-linux-gnu. 148s Preparing to unpack .../029-cpp-powerpc64le-linux-gnu_4%3a14.1.0-2ubuntu1_ppc64el.deb ... 148s Unpacking cpp-powerpc64le-linux-gnu (4:14.1.0-2ubuntu1) ... 148s Selecting previously unselected package cpp. 148s Preparing to unpack .../030-cpp_4%3a14.1.0-2ubuntu1_ppc64el.deb ... 148s Unpacking cpp (4:14.1.0-2ubuntu1) ... 148s Selecting previously unselected package libcc1-0:ppc64el. 148s Preparing to unpack .../031-libcc1-0_14.2.0-8ubuntu1_ppc64el.deb ... 148s Unpacking libcc1-0:ppc64el (14.2.0-8ubuntu1) ... 148s Selecting previously unselected package libgomp1:ppc64el. 148s Preparing to unpack .../032-libgomp1_14.2.0-8ubuntu1_ppc64el.deb ... 148s Unpacking libgomp1:ppc64el (14.2.0-8ubuntu1) ... 148s Selecting previously unselected package libitm1:ppc64el. 148s Preparing to unpack .../033-libitm1_14.2.0-8ubuntu1_ppc64el.deb ... 148s Unpacking libitm1:ppc64el (14.2.0-8ubuntu1) ... 148s Selecting previously unselected package libasan8:ppc64el. 148s Preparing to unpack .../034-libasan8_14.2.0-8ubuntu1_ppc64el.deb ... 148s Unpacking libasan8:ppc64el (14.2.0-8ubuntu1) ... 148s Selecting previously unselected package liblsan0:ppc64el. 148s Preparing to unpack .../035-liblsan0_14.2.0-8ubuntu1_ppc64el.deb ... 148s Unpacking liblsan0:ppc64el (14.2.0-8ubuntu1) ... 148s Selecting previously unselected package libtsan2:ppc64el. 148s Preparing to unpack .../036-libtsan2_14.2.0-8ubuntu1_ppc64el.deb ... 148s Unpacking libtsan2:ppc64el (14.2.0-8ubuntu1) ... 148s Selecting previously unselected package libubsan1:ppc64el. 148s Preparing to unpack .../037-libubsan1_14.2.0-8ubuntu1_ppc64el.deb ... 148s Unpacking libubsan1:ppc64el (14.2.0-8ubuntu1) ... 148s Selecting previously unselected package libquadmath0:ppc64el. 148s Preparing to unpack .../038-libquadmath0_14.2.0-8ubuntu1_ppc64el.deb ... 148s Unpacking libquadmath0:ppc64el (14.2.0-8ubuntu1) ... 148s Selecting previously unselected package libgcc-14-dev:ppc64el. 148s Preparing to unpack .../039-libgcc-14-dev_14.2.0-8ubuntu1_ppc64el.deb ... 148s Unpacking libgcc-14-dev:ppc64el (14.2.0-8ubuntu1) ... 148s Selecting previously unselected package gcc-14-powerpc64le-linux-gnu. 148s Preparing to unpack .../040-gcc-14-powerpc64le-linux-gnu_14.2.0-8ubuntu1_ppc64el.deb ... 148s Unpacking gcc-14-powerpc64le-linux-gnu (14.2.0-8ubuntu1) ... 148s Selecting previously unselected package gcc-14. 149s Preparing to unpack .../041-gcc-14_14.2.0-8ubuntu1_ppc64el.deb ... 149s Unpacking gcc-14 (14.2.0-8ubuntu1) ... 149s Selecting previously unselected package gcc-powerpc64le-linux-gnu. 149s Preparing to unpack .../042-gcc-powerpc64le-linux-gnu_4%3a14.1.0-2ubuntu1_ppc64el.deb ... 149s Unpacking gcc-powerpc64le-linux-gnu (4:14.1.0-2ubuntu1) ... 149s Selecting previously unselected package gcc. 149s Preparing to unpack .../043-gcc_4%3a14.1.0-2ubuntu1_ppc64el.deb ... 149s Unpacking gcc (4:14.1.0-2ubuntu1) ... 149s Selecting previously unselected package libstdc++-14-dev:ppc64el. 149s Preparing to unpack .../044-libstdc++-14-dev_14.2.0-8ubuntu1_ppc64el.deb ... 149s Unpacking libstdc++-14-dev:ppc64el (14.2.0-8ubuntu1) ... 149s Selecting previously unselected package g++-14-powerpc64le-linux-gnu. 149s Preparing to unpack .../045-g++-14-powerpc64le-linux-gnu_14.2.0-8ubuntu1_ppc64el.deb ... 149s Unpacking g++-14-powerpc64le-linux-gnu (14.2.0-8ubuntu1) ... 149s Selecting previously unselected package g++-14. 149s Preparing to unpack .../046-g++-14_14.2.0-8ubuntu1_ppc64el.deb ... 149s Unpacking g++-14 (14.2.0-8ubuntu1) ... 149s Selecting previously unselected package g++-powerpc64le-linux-gnu. 149s Preparing to unpack .../047-g++-powerpc64le-linux-gnu_4%3a14.1.0-2ubuntu1_ppc64el.deb ... 149s Unpacking g++-powerpc64le-linux-gnu (4:14.1.0-2ubuntu1) ... 149s Selecting previously unselected package g++. 149s Preparing to unpack .../048-g++_4%3a14.1.0-2ubuntu1_ppc64el.deb ... 149s Unpacking g++ (4:14.1.0-2ubuntu1) ... 149s Selecting previously unselected package build-essential. 149s Preparing to unpack .../049-build-essential_12.10ubuntu1_ppc64el.deb ... 149s Unpacking build-essential (12.10ubuntu1) ... 149s Selecting previously unselected package cython3. 149s Preparing to unpack .../050-cython3_3.0.11+dfsg-1ubuntu1_ppc64el.deb ... 149s Unpacking cython3 (3.0.11+dfsg-1ubuntu1) ... 149s Selecting previously unselected package libdebhelper-perl. 149s Preparing to unpack .../051-libdebhelper-perl_13.20ubuntu1_all.deb ... 149s Unpacking libdebhelper-perl (13.20ubuntu1) ... 149s Selecting previously unselected package libtool. 149s Preparing to unpack .../052-libtool_2.4.7-7build1_all.deb ... 149s Unpacking libtool (2.4.7-7build1) ... 149s Selecting previously unselected package dh-autoreconf. 149s Preparing to unpack .../053-dh-autoreconf_20_all.deb ... 149s Unpacking dh-autoreconf (20) ... 149s Selecting previously unselected package libarchive-zip-perl. 149s Preparing to unpack .../054-libarchive-zip-perl_1.68-1_all.deb ... 149s Unpacking libarchive-zip-perl (1.68-1) ... 149s Selecting previously unselected package libfile-stripnondeterminism-perl. 149s Preparing to unpack .../055-libfile-stripnondeterminism-perl_1.14.0-1_all.deb ... 149s Unpacking libfile-stripnondeterminism-perl (1.14.0-1) ... 149s Selecting previously unselected package dh-strip-nondeterminism. 149s Preparing to unpack .../056-dh-strip-nondeterminism_1.14.0-1_all.deb ... 149s Unpacking dh-strip-nondeterminism (1.14.0-1) ... 149s Selecting previously unselected package debugedit. 149s Preparing to unpack .../057-debugedit_1%3a5.1-1_ppc64el.deb ... 149s Unpacking debugedit (1:5.1-1) ... 149s Selecting previously unselected package dwz. 149s Preparing to unpack .../058-dwz_0.15-1build6_ppc64el.deb ... 149s Unpacking dwz (0.15-1build6) ... 149s Selecting previously unselected package gettext. 149s Preparing to unpack .../059-gettext_0.22.5-2_ppc64el.deb ... 149s Unpacking gettext (0.22.5-2) ... 149s Selecting previously unselected package intltool-debian. 149s Preparing to unpack .../060-intltool-debian_0.35.0+20060710.6_all.deb ... 149s Unpacking intltool-debian (0.35.0+20060710.6) ... 149s Selecting previously unselected package po-debconf. 149s Preparing to unpack .../061-po-debconf_1.0.21+nmu1_all.deb ... 149s Unpacking po-debconf (1.0.21+nmu1) ... 150s Selecting previously unselected package debhelper. 150s Preparing to unpack .../062-debhelper_13.20ubuntu1_all.deb ... 150s Unpacking debhelper (13.20ubuntu1) ... 150s Selecting previously unselected package dh-python. 150s Preparing to unpack .../063-dh-python_6.20241024_all.deb ... 150s Unpacking dh-python (6.20241024) ... 150s Selecting previously unselected package xml-core. 150s Preparing to unpack .../064-xml-core_0.19_all.deb ... 150s Unpacking xml-core (0.19) ... 150s Selecting previously unselected package docutils-common. 150s Preparing to unpack .../065-docutils-common_0.21.2+dfsg-2_all.deb ... 150s Unpacking docutils-common (0.21.2+dfsg-2) ... 150s Selecting previously unselected package fonts-font-awesome. 150s Preparing to unpack .../066-fonts-font-awesome_5.0.10+really4.7.0~dfsg-4.1_all.deb ... 150s Unpacking fonts-font-awesome (5.0.10+really4.7.0~dfsg-4.1) ... 150s Selecting previously unselected package fonts-lyx. 150s Preparing to unpack .../067-fonts-lyx_2.4.2.1-1_all.deb ... 150s Unpacking fonts-lyx (2.4.2.1-1) ... 150s Selecting previously unselected package fonts-mathjax. 150s Preparing to unpack .../068-fonts-mathjax_2.7.9+dfsg-1_all.deb ... 150s Unpacking fonts-mathjax (2.7.9+dfsg-1) ... 150s Selecting previously unselected package libaec0:ppc64el. 150s Preparing to unpack .../069-libaec0_1.1.3-1_ppc64el.deb ... 150s Unpacking libaec0:ppc64el (1.1.3-1) ... 150s Selecting previously unselected package libblas3:ppc64el. 150s Preparing to unpack .../070-libblas3_3.12.0-3build2_ppc64el.deb ... 150s Unpacking libblas3:ppc64el (3.12.0-3build2) ... 150s Selecting previously unselected package libpixman-1-0:ppc64el. 150s Preparing to unpack .../071-libpixman-1-0_0.44.0-3_ppc64el.deb ... 150s Unpacking libpixman-1-0:ppc64el (0.44.0-3) ... 150s Selecting previously unselected package libxcb-render0:ppc64el. 150s Preparing to unpack .../072-libxcb-render0_1.17.0-2_ppc64el.deb ... 150s Unpacking libxcb-render0:ppc64el (1.17.0-2) ... 150s Selecting previously unselected package libxcb-shm0:ppc64el. 150s Preparing to unpack .../073-libxcb-shm0_1.17.0-2_ppc64el.deb ... 150s Unpacking libxcb-shm0:ppc64el (1.17.0-2) ... 150s Selecting previously unselected package libcairo2:ppc64el. 150s Preparing to unpack .../074-libcairo2_1.18.2-2_ppc64el.deb ... 150s Unpacking libcairo2:ppc64el (1.18.2-2) ... 150s Selecting previously unselected package libdeflate0:ppc64el. 150s Preparing to unpack .../075-libdeflate0_1.22-1_ppc64el.deb ... 150s Unpacking libdeflate0:ppc64el (1.22-1) ... 150s Selecting previously unselected package libexpat1-dev:ppc64el. 150s Preparing to unpack .../076-libexpat1-dev_2.6.2-2_ppc64el.deb ... 150s Unpacking libexpat1-dev:ppc64el (2.6.2-2) ... 150s Selecting previously unselected package libgfortran5:ppc64el. 150s Preparing to unpack .../077-libgfortran5_14.2.0-8ubuntu1_ppc64el.deb ... 150s Unpacking libgfortran5:ppc64el (14.2.0-8ubuntu1) ... 150s Selecting previously unselected package libgraphite2-3:ppc64el. 150s Preparing to unpack .../078-libgraphite2-3_1.3.14-2ubuntu1_ppc64el.deb ... 150s Unpacking libgraphite2-3:ppc64el (1.3.14-2ubuntu1) ... 150s Selecting previously unselected package libharfbuzz0b:ppc64el. 150s Preparing to unpack .../079-libharfbuzz0b_10.0.1-1_ppc64el.deb ... 150s Unpacking libharfbuzz0b:ppc64el (10.0.1-1) ... 150s Selecting previously unselected package libsz2:ppc64el. 150s Preparing to unpack .../080-libsz2_1.1.3-1_ppc64el.deb ... 150s Unpacking libsz2:ppc64el (1.1.3-1) ... 150s Selecting previously unselected package libhdf5-103-1t64:ppc64el. 150s Preparing to unpack .../081-libhdf5-103-1t64_1.10.10+repack-4ubuntu3_ppc64el.deb ... 150s Unpacking libhdf5-103-1t64:ppc64el (1.10.10+repack-4ubuntu3) ... 150s Selecting previously unselected package libhdf5-hl-100t64:ppc64el. 150s Preparing to unpack .../082-libhdf5-hl-100t64_1.10.10+repack-4ubuntu3_ppc64el.deb ... 150s Unpacking libhdf5-hl-100t64:ppc64el (1.10.10+repack-4ubuntu3) ... 150s Selecting previously unselected package libimagequant0:ppc64el. 150s Preparing to unpack .../083-libimagequant0_2.18.0-1build1_ppc64el.deb ... 150s Unpacking libimagequant0:ppc64el (2.18.0-1build1) ... 150s Selecting previously unselected package libjpeg-turbo8:ppc64el. 150s Preparing to unpack .../084-libjpeg-turbo8_2.1.5-2ubuntu2_ppc64el.deb ... 150s Unpacking libjpeg-turbo8:ppc64el (2.1.5-2ubuntu2) ... 151s Selecting previously unselected package libjpeg8:ppc64el. 151s Preparing to unpack .../085-libjpeg8_8c-2ubuntu11_ppc64el.deb ... 151s Unpacking libjpeg8:ppc64el (8c-2ubuntu11) ... 151s Selecting previously unselected package libjs-jquery. 151s Preparing to unpack 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Unpacking liblapack3:ppc64el (3.12.0-3build2) ... 151s Selecting previously unselected package liblbfgsb0:ppc64el. 151s Preparing to unpack .../092-liblbfgsb0_3.0+dfsg.4-1build1_ppc64el.deb ... 151s Unpacking liblbfgsb0:ppc64el (3.0+dfsg.4-1build1) ... 151s Selecting previously unselected package liblcms2-2:ppc64el. 151s Preparing to unpack .../093-liblcms2-2_2.16-2_ppc64el.deb ... 151s Unpacking liblcms2-2:ppc64el (2.16-2) ... 151s Selecting previously unselected package liblerc4:ppc64el. 151s Preparing to unpack .../094-liblerc4_4.0.0+ds-4ubuntu2_ppc64el.deb ... 151s Unpacking liblerc4:ppc64el (4.0.0+ds-4ubuntu2) ... 151s Selecting previously unselected package liblzf1:ppc64el. 151s Preparing to unpack .../095-liblzf1_3.6-4_ppc64el.deb ... 151s Unpacking liblzf1:ppc64el (3.6-4) ... 151s Selecting previously unselected package libnetcdf19t64:ppc64el. 151s Preparing to unpack .../096-libnetcdf19t64_1%3a4.9.2-6ubuntu1_ppc64el.deb ... 151s Unpacking libnetcdf19t64:ppc64el (1:4.9.2-6ubuntu1) ... 151s Selecting previously unselected package zlib1g-dev:ppc64el. 151s Preparing to unpack .../097-zlib1g-dev_1%3a1.3.dfsg+really1.3.1-1ubuntu1_ppc64el.deb ... 151s Unpacking zlib1g-dev:ppc64el (1:1.3.dfsg+really1.3.1-1ubuntu1) ... 151s Selecting previously unselected package libpython3.12-dev:ppc64el. 151s Preparing to unpack .../098-libpython3.12-dev_3.12.7-3_ppc64el.deb ... 151s Unpacking libpython3.12-dev:ppc64el (3.12.7-3) ... 151s Selecting previously unselected package libpython3-dev:ppc64el. 151s Preparing to unpack .../099-libpython3-dev_3.12.7-1_ppc64el.deb ... 151s Unpacking libpython3-dev:ppc64el (3.12.7-1) ... 151s Selecting previously unselected package libpython3.13-stdlib:ppc64el. 151s Preparing to unpack .../100-libpython3.13-stdlib_3.13.0-2_ppc64el.deb ... 151s Unpacking libpython3.13-stdlib:ppc64el (3.13.0-2) ... 151s Selecting previously unselected package libpython3.13:ppc64el. 151s Preparing to unpack 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.../106-libsharpyuv0_1.4.0-0.1_ppc64el.deb ... 152s Unpacking libsharpyuv0:ppc64el (1.4.0-0.1) ... 152s Selecting previously unselected package libjbig0:ppc64el. 152s Preparing to unpack .../107-libjbig0_2.1-6.1ubuntu2_ppc64el.deb ... 152s Unpacking libjbig0:ppc64el (2.1-6.1ubuntu2) ... 152s Selecting previously unselected package libwebp7:ppc64el. 152s Preparing to unpack .../108-libwebp7_1.4.0-0.1_ppc64el.deb ... 152s Unpacking libwebp7:ppc64el (1.4.0-0.1) ... 152s Selecting previously unselected package libtiff6:ppc64el. 152s Preparing to unpack .../109-libtiff6_4.5.1+git230720-4ubuntu4_ppc64el.deb ... 152s Unpacking libtiff6:ppc64el (4.5.1+git230720-4ubuntu4) ... 152s Selecting previously unselected package libwebpdemux2:ppc64el. 152s Preparing to unpack .../110-libwebpdemux2_1.4.0-0.1_ppc64el.deb ... 152s Unpacking libwebpdemux2:ppc64el (1.4.0-0.1) ... 152s Selecting previously unselected package libwebpmux3:ppc64el. 152s Preparing to unpack .../111-libwebpmux3_1.4.0-0.1_ppc64el.deb ... 152s Unpacking libwebpmux3:ppc64el (1.4.0-0.1) ... 152s Selecting previously unselected package libxslt1.1:ppc64el. 152s Preparing to unpack .../112-libxslt1.1_1.1.39-0exp1ubuntu1_ppc64el.deb ... 152s Unpacking libxslt1.1:ppc64el (1.1.39-0exp1ubuntu1) ... 152s Selecting previously unselected package python3-packaging. 152s Preparing to unpack .../113-python3-packaging_24.1-1_all.deb ... 152s Unpacking python3-packaging (24.1-1) ... 152s Selecting previously unselected package python3-pyproject-hooks. 152s Preparing to unpack .../114-python3-pyproject-hooks_1.2.0-1_all.deb ... 152s Unpacking python3-pyproject-hooks (1.2.0-1) ... 152s Selecting previously unselected package python3-toml. 152s Preparing to unpack .../115-python3-toml_0.10.2-1_all.deb ... 152s Unpacking python3-toml (0.10.2-1) ... 152s Selecting previously unselected package python3-wheel. 152s Preparing to unpack .../116-python3-wheel_0.44.0-1_all.deb ... 152s Unpacking python3-wheel (0.44.0-1) ... 152s Selecting previously unselected package python3-build. 152s Preparing to unpack .../117-python3-build_1.2.2-1_all.deb ... 152s Unpacking python3-build (1.2.2-1) ... 152s Selecting previously unselected package python3-installer. 152s Preparing to unpack .../118-python3-installer_0.7.0+dfsg1-3_all.deb ... 152s Unpacking python3-installer (0.7.0+dfsg1-3) ... 152s Selecting previously unselected package pybuild-plugin-pyproject. 152s Preparing to unpack .../119-pybuild-plugin-pyproject_6.20241024_all.deb ... 152s Unpacking pybuild-plugin-pyproject (6.20241024) ... 152s Selecting previously unselected package python-matplotlib-data. 152s Preparing to unpack .../120-python-matplotlib-data_3.8.3-3_all.deb ... 152s Unpacking python-matplotlib-data (3.8.3-3) ... 152s Selecting previously unselected package libjs-mathjax. 152s Preparing to unpack .../121-libjs-mathjax_2.7.9+dfsg-1_all.deb ... 152s Unpacking libjs-mathjax (2.7.9+dfsg-1) ... 153s Selecting previously unselected package python-mdanalysis-doc. 153s Preparing to unpack .../122-python-mdanalysis-doc_2.7.0-5_all.deb ... 153s Unpacking python-mdanalysis-doc (2.7.0-5) ... 153s Selecting previously unselected package python3.13. 153s Preparing to unpack .../123-python3.13_3.13.0-2_ppc64el.deb ... 153s Unpacking python3.13 (3.13.0-2) ... 153s Selecting previously unselected package python3-all. 153s Preparing to unpack .../124-python3-all_3.12.7-1_ppc64el.deb ... 153s Unpacking python3-all (3.12.7-1) ... 153s Selecting previously unselected package python3.12-dev. 153s Preparing to unpack .../125-python3.12-dev_3.12.7-3_ppc64el.deb ... 153s Unpacking python3.12-dev (3.12.7-3) ... 153s Selecting previously unselected package python3-dev. 153s Preparing to unpack .../126-python3-dev_3.12.7-1_ppc64el.deb ... 153s Unpacking python3-dev (3.12.7-1) ... 153s Selecting previously unselected package python3.13-dev. 153s Preparing to unpack .../127-python3.13-dev_3.13.0-2_ppc64el.deb ... 153s Unpacking python3.13-dev (3.13.0-2) ... 153s Selecting previously unselected package python3-all-dev. 153s Preparing to unpack .../128-python3-all-dev_3.12.7-1_ppc64el.deb ... 153s Unpacking python3-all-dev (3.12.7-1) ... 153s Selecting previously unselected package python3-appdirs. 153s Preparing to unpack .../129-python3-appdirs_1.4.4-4_all.deb ... 153s Unpacking python3-appdirs (1.4.4-4) ... 153s Selecting previously unselected package python3-numpy. 153s Preparing to unpack .../130-python3-numpy_1%3a1.26.4+ds-11build1_ppc64el.deb ... 153s Unpacking python3-numpy (1:1.26.4+ds-11build1) ... 154s Selecting previously unselected package python3.12-tk. 154s Preparing to unpack .../131-python3.12-tk_3.12.7-3_ppc64el.deb ... 154s Unpacking python3.12-tk (3.12.7-3) ... 154s Selecting previously unselected package python3.13-tk. 154s Preparing to unpack .../132-python3.13-tk_3.13.0-2_ppc64el.deb ... 154s Unpacking python3.13-tk (3.13.0-2) ... 154s Selecting previously unselected package python3-tk:ppc64el. 154s Preparing to unpack .../133-python3-tk_3.12.7-1_ppc64el.deb ... 154s Unpacking python3-tk:ppc64el (3.12.7-1) ... 154s Selecting previously unselected package python3-pil.imagetk:ppc64el. 154s Preparing to unpack .../134-python3-pil.imagetk_10.4.0-1ubuntu1_ppc64el.deb ... 154s Unpacking python3-pil.imagetk:ppc64el (10.4.0-1ubuntu1) ... 154s Selecting previously unselected package libopenjp2-7:ppc64el. 154s Preparing to unpack .../135-libopenjp2-7_2.5.0-2ubuntu1_ppc64el.deb ... 154s Unpacking libopenjp2-7:ppc64el (2.5.0-2ubuntu1) ... 154s Selecting previously unselected package python3-pil:ppc64el. 154s Preparing to unpack .../136-python3-pil_10.4.0-1ubuntu1_ppc64el.deb ... 154s Unpacking python3-pil:ppc64el (10.4.0-1ubuntu1) ... 154s Selecting previously unselected package python3-cairo. 154s Preparing to unpack .../137-python3-cairo_1.26.1-2_ppc64el.deb ... 154s Unpacking python3-cairo (1.26.1-2) ... 154s Selecting previously unselected package python3-freetype. 154s Preparing to unpack .../138-python3-freetype_2.5.1-1_all.deb ... 154s Unpacking python3-freetype (2.5.1-1) ... 154s Selecting previously unselected package python3-rlpycairo. 154s Preparing to unpack .../139-python3-rlpycairo_0.3.0-3_all.deb ... 154s Unpacking python3-rlpycairo (0.3.0-3) ... 154s Selecting previously unselected package python3-reportlab. 154s Preparing to unpack .../140-python3-reportlab_4.2.5-1_all.deb ... 154s Unpacking python3-reportlab (4.2.5-1) ... 154s Selecting previously unselected package w3c-sgml-lib. 154s Preparing to unpack .../141-w3c-sgml-lib_1.3-3_all.deb ... 154s Unpacking w3c-sgml-lib (1.3-3) ... 154s Selecting previously unselected package python3-biopython. 154s Preparing to unpack .../142-python3-biopython_1.84+dfsg-4_ppc64el.deb ... 154s Unpacking python3-biopython (1.84+dfsg-4) ... 154s Selecting previously unselected package python3-brotli. 154s Preparing to unpack .../143-python3-brotli_1.1.0-2build2_ppc64el.deb ... 154s Unpacking python3-brotli (1.1.0-2build2) ... 154s Selecting previously unselected package python3-cftime. 154s Preparing to unpack .../144-python3-cftime_1.6.4-1_ppc64el.deb ... 154s Unpacking python3-cftime (1.6.4-1) ... 154s Selecting previously unselected package python3-lxml:ppc64el. 154s Preparing to unpack .../145-python3-lxml_5.3.0-1_ppc64el.deb ... 154s Unpacking python3-lxml:ppc64el (5.3.0-1) ... 154s Selecting previously unselected package python3-citeproc. 154s Preparing to unpack .../146-python3-citeproc_0.6.0-3_all.deb ... 154s Unpacking python3-citeproc (0.6.0-3) ... 154s Selecting previously unselected package python3-contourpy. 154s Preparing to unpack .../147-python3-contourpy_1.3.0-2_ppc64el.deb ... 154s Unpacking python3-contourpy (1.3.0-2) ... 154s Selecting previously unselected package python3-cycler. 154s Preparing to unpack .../148-python3-cycler_0.12.1-1_all.deb ... 154s Unpacking python3-cycler (0.12.1-1) ... 154s Selecting previously unselected package python3-six. 154s Preparing to unpack .../149-python3-six_1.16.0-7_all.deb ... 154s Unpacking python3-six (1.16.0-7) ... 154s Selecting previously unselected package python3-dateutil. 154s Preparing to unpack .../150-python3-dateutil_2.9.0-2_all.deb ... 154s Unpacking python3-dateutil (2.9.0-2) ... 154s Selecting previously unselected package python3-decorator. 154s Preparing to unpack .../151-python3-decorator_5.1.1-5_all.deb ... 154s Unpacking python3-decorator (5.1.1-5) ... 154s Selecting previously unselected package python3-defusedxml. 154s Preparing to unpack .../152-python3-defusedxml_0.7.1-2_all.deb ... 154s Unpacking python3-defusedxml (0.7.1-2) ... 154s Selecting previously unselected package python3-roman. 154s Preparing to unpack .../153-python3-roman_4.2-1_all.deb ... 154s Unpacking python3-roman (4.2-1) ... 154s Selecting previously unselected package python3-docutils. 154s Preparing to unpack .../154-python3-docutils_0.21.2+dfsg-2_all.deb ... 154s Unpacking python3-docutils (0.21.2+dfsg-2) ... 155s Selecting previously unselected package python3-looseversion. 155s Preparing to unpack .../155-python3-looseversion_1.3.0-3_all.deb ... 155s Unpacking python3-looseversion (1.3.0-3) ... 155s Selecting previously unselected package python3-duecredit. 155s Preparing to unpack .../156-python3-duecredit_0.10.2-2_all.deb ... 155s Unpacking python3-duecredit (0.10.2-2) ... 155s Selecting previously unselected package python3-monotonic. 155s Preparing to unpack .../157-python3-monotonic_1.6-2_all.deb ... 155s Unpacking python3-monotonic (1.6-2) ... 155s Selecting previously unselected package python3-fasteners. 155s Preparing to unpack .../158-python3-fasteners_0.18-2_all.deb ... 155s Unpacking python3-fasteners (0.18-2) ... 155s Selecting previously unselected package python3-scipy. 155s Preparing to unpack .../159-python3-scipy_1.13.1-5_ppc64el.deb ... 155s Unpacking python3-scipy (1.13.1-5) ... 155s Selecting previously unselected package python3-ufolib2. 155s Preparing to unpack .../160-python3-ufolib2_0.16.1+dfsg1-1_all.deb ... 155s Unpacking python3-ufolib2 (0.16.1+dfsg1-1) ... 155s Selecting previously unselected package python3-mpmath. 155s Preparing to unpack .../161-python3-mpmath_1.3.0-1_all.deb ... 155s Unpacking python3-mpmath (1.3.0-1) ... 155s Selecting previously unselected package python3-sympy. 155s Preparing to unpack .../162-python3-sympy_1.13.3-1_all.deb ... 155s Unpacking python3-sympy (1.13.3-1) ... 156s Selecting previously unselected package python3-tz. 156s Preparing to unpack .../163-python3-tz_2024.1-2_all.deb ... 156s Unpacking python3-tz (2024.1-2) ... 156s Selecting previously unselected package python3-fs. 156s Preparing to unpack .../164-python3-fs_2.4.16-4_all.deb ... 156s Unpacking python3-fs (2.4.16-4) ... 156s Selecting previously unselected package python3-lz4. 156s Preparing to unpack .../165-python3-lz4_4.0.2+dfsg-1build4_ppc64el.deb ... 156s Unpacking python3-lz4 (4.0.2+dfsg-1build4) ... 156s Selecting previously unselected package python3-unicodedata2. 156s Preparing to unpack .../166-python3-unicodedata2_15.1.0+ds-1build1_ppc64el.deb ... 156s Unpacking python3-unicodedata2 (15.1.0+ds-1build1) ... 156s Selecting previously unselected package unicode-data. 156s Preparing to unpack .../167-unicode-data_15.1.0-1_all.deb ... 156s Unpacking unicode-data (15.1.0-1) ... 156s Selecting previously unselected package python3-fonttools. 156s Preparing to unpack .../168-python3-fonttools_4.46.0-1build2_ppc64el.deb ... 156s Unpacking python3-fonttools (4.46.0-1build2) ... 156s Selecting previously unselected package sphinx-rtd-theme-common. 156s Preparing to unpack .../169-sphinx-rtd-theme-common_3.0.1+dfsg-1_all.deb ... 156s Unpacking sphinx-rtd-theme-common (3.0.1+dfsg-1) ... 156s Selecting previously unselected package python3-mrcfile. 156s Preparing to unpack .../170-python3-mrcfile_1.5.3-3_all.deb ... 156s Unpacking python3-mrcfile (1.5.3-3) ... 156s Selecting previously unselected package python3-griddataformats. 156s Preparing to unpack .../171-python3-griddataformats_1.0.2-2_all.deb ... 156s Unpacking python3-griddataformats (1.0.2-2) ... 156s Selecting previously unselected package python3-gsd. 156s Preparing to unpack .../172-python3-gsd_3.3.0-1_ppc64el.deb ... 156s Unpacking python3-gsd (3.3.0-1) ... 156s Selecting previously unselected package python3-h5py-serial. 156s Preparing to unpack .../173-python3-h5py-serial_3.11.0-5ubuntu1_ppc64el.deb ... 156s Unpacking python3-h5py-serial (3.11.0-5ubuntu1) ... 156s Selecting previously unselected package python3-h5py. 156s Preparing to unpack .../174-python3-h5py_3.11.0-5ubuntu1_all.deb ... 156s Unpacking python3-h5py (3.11.0-5ubuntu1) ... 156s Selecting previously unselected package python3-sortedcontainers. 156s Preparing to unpack .../175-python3-sortedcontainers_2.4.0-2_all.deb ... 156s Unpacking python3-sortedcontainers (2.4.0-2) ... 156s Selecting previously unselected package python3-hypothesis. 156s Preparing to unpack .../176-python3-hypothesis_6.116.0-1_all.deb ... 156s Unpacking python3-hypothesis (6.116.0-1) ... 156s Selecting previously unselected package python3-imagesize. 156s Preparing to unpack .../177-python3-imagesize_1.4.1-1_all.deb ... 156s Unpacking python3-imagesize (1.4.1-1) ... 156s Selecting previously unselected package python3-iniconfig. 156s Preparing to unpack .../178-python3-iniconfig_1.1.1-2_all.deb ... 156s Unpacking python3-iniconfig (1.1.1-2) ... 156s Selecting previously unselected package python3-joblib. 156s Preparing to unpack .../179-python3-joblib_1.3.2-5_all.deb ... 156s Unpacking python3-joblib (1.3.2-5) ... 156s Selecting previously unselected package python3-kiwisolver. 156s Preparing to unpack .../180-python3-kiwisolver_1.4.7-2_ppc64el.deb ... 156s Unpacking python3-kiwisolver (1.4.7-2) ... 157s Selecting previously unselected package python3-latexcodec. 157s Preparing to unpack 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python3-threadpoolctl (3.1.0-1) ... 157s Selecting previously unselected package python3-tqdm. 157s Preparing to unpack .../187-python3-tqdm_4.67.0-1_all.deb ... 157s Unpacking python3-tqdm (4.67.0-1) ... 157s Selecting previously unselected package python3-mdanalysis. 157s Preparing to unpack .../188-python3-mdanalysis_2.7.0-5_ppc64el.deb ... 157s Unpacking python3-mdanalysis (2.7.0-5) ... 157s Selecting previously unselected package sphinx-common. 157s Preparing to unpack .../189-sphinx-common_7.4.7-4_all.deb ... 157s Unpacking sphinx-common (7.4.7-4) ... 157s Selecting previously unselected package python3-alabaster. 157s Preparing to unpack .../190-python3-alabaster_0.7.16-0.1_all.deb ... 157s Unpacking python3-alabaster (0.7.16-0.1) ... 157s Selecting previously unselected package python3-snowballstemmer. 157s Preparing to unpack .../191-python3-snowballstemmer_2.2.0-4build1_all.deb ... 157s Unpacking python3-snowballstemmer (2.2.0-4build1) ... 157s Selecting previously unselected package python3-sphinx. 157s Preparing to unpack .../192-python3-sphinx_7.4.7-4_all.deb ... 157s Unpacking python3-sphinx (7.4.7-4) ... 157s Selecting previously unselected package python3-sphinxcontrib.jquery. 157s Preparing to unpack .../193-python3-sphinxcontrib.jquery_4.1-5_all.deb ... 157s Unpacking python3-sphinxcontrib.jquery (4.1-5) ... 157s Selecting previously unselected package python3-sphinx-rtd-theme. 157s Preparing to unpack .../194-python3-sphinx-rtd-theme_3.0.1+dfsg-1_all.deb ... 157s Unpacking python3-sphinx-rtd-theme (3.0.1+dfsg-1) ... 157s Selecting previously unselected package python3-msmb-theme. 157s Preparing to unpack .../195-python3-msmb-theme_1.2.0-4_all.deb ... 157s Unpacking python3-msmb-theme (1.2.0-4) ... 157s Selecting previously unselected package python3-netcdf4. 157s Preparing to unpack .../196-python3-netcdf4_1.7.2-1_ppc64el.deb ... 157s Unpacking python3-netcdf4 (1.7.2-1) ... 157s Selecting previously unselected package python3-networkx. 157s 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libxss1:ppc64el (1:1.2.3-1build3) ... 174s Setting up libtsan2:ppc64el (14.2.0-8ubuntu1) ... 174s Setting up libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... 174s Setting up python3-mpmath (1.3.0-1) ... 176s Setting up libisl23:ppc64el (0.27-1) ... 176s Setting up python3-build (1.2.2-1) ... 176s Setting up python-matplotlib-data (3.8.3-3) ... 176s Setting up libwebpmux3:ppc64el (1.4.0-0.1) ... 176s Setting up python3-appdirs (1.4.4-4) ... 176s Setting up libpython3.13-stdlib:ppc64el (3.13.0-2) ... 176s Setting up fonts-font-awesome (5.0.10+really4.7.0~dfsg-4.1) ... 176s Setting up sphinx-rtd-theme-common (3.0.1+dfsg-1) ... 176s Setting up libcc1-0:ppc64el (14.2.0-8ubuntu1) ... 176s Setting up liblsan0:ppc64el (14.2.0-8ubuntu1) ... 176s Setting up libsz2:ppc64el (1.1.3-1) ... 176s Setting up libitm1:ppc64el (14.2.0-8ubuntu1) ... 176s Setting up libjs-underscore (1.13.4~dfsg+~1.11.4-3) ... 176s Setting up python3-imagesize (1.4.1-1) ... 176s Setting up libpython3.13:ppc64el (3.13.0-2) ... 176s Setting up libjpeg8:ppc64el (8c-2ubuntu11) ... 176s Setting up automake (1:1.16.5-1.3ubuntu1) ... 176s update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode 176s Setting up libfile-stripnondeterminism-perl (1.14.0-1) ... 176s Setting up python3-sympy (1.13.3-1) ... 193s Setting up liblapack3:ppc64el (3.12.0-3build2) ... 193s update-alternatives: using /usr/lib/powerpc64le-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/powerpc64le-linux-gnu/liblapack.so.3 (liblapack.so.3-powerpc64le-linux-gnu) in auto mode 193s Setting up gettext (0.22.5-2) ... 193s Setting up python3.13 (3.13.0-2) ... 194s Setting up pybuild-plugin-pyproject (6.20241024) ... 194s Setting up fontconfig-config (2.15.0-1.1ubuntu2) ... 195s Setting up python3-pytest (8.3.3-1) ... 195s Setting up libwebpdemux2:ppc64el (1.4.0-0.1) ... 195s Setting up python3-hypothesis (6.116.0-1) ... 196s Setting up python3-all (3.12.7-1) ... 196s Setting up libpython3.12-dev:ppc64el (3.12.7-3) ... 196s Setting up xfonts-utils (1:7.7+7) ... 196s Setting up intltool-debian (0.35.0+20060710.6) ... 196s Setting up python3-fs (2.4.16-4) ... 197s Setting up libjs-jquery-ui (1.13.2+dfsg-1) ... 197s Setting up libraqm0:ppc64el (0.10.1-1build1) ... 197s Setting up libpython3.13-dev:ppc64el (3.13.0-2) ... 197s Setting up python3.12-dev (3.12.7-3) ... 197s Setting up cpp-14-powerpc64le-linux-gnu (14.2.0-8ubuntu1) ... 197s Setting up python3-numpy (1:1.26.4+ds-11build1) ... 201s Setting up libjs-sphinxdoc (7.4.7-4) ... 201s Setting up cpp-14 (14.2.0-8ubuntu1) ... 201s Setting up dh-strip-nondeterminism (1.14.0-1) ... 201s Setting up python3-lxml:ppc64el (5.3.0-1) ... 202s Setting up libtiff6:ppc64el (4.5.1+git230720-4ubuntu4) ... 202s Setting up xml-core (0.19) ... 202s Setting up python3-contourpy (1.3.0-2) ... 202s Setting up libfontconfig1:ppc64el (2.15.0-1.1ubuntu2) ... 202s Setting up libgcc-14-dev:ppc64el (14.2.0-8ubuntu1) ... 202s Setting up libhdf5-103-1t64:ppc64el (1.10.10+repack-4ubuntu3) ... 202s Setting up libstdc++-14-dev:ppc64el (14.2.0-8ubuntu1) ... 202s Setting up cpp-powerpc64le-linux-gnu (4:14.1.0-2ubuntu1) ... 202s Setting up gcc-14-powerpc64le-linux-gnu (14.2.0-8ubuntu1) ... 202s Setting up liblbfgsb0:ppc64el (3.0+dfsg.4-1build1) ... 202s Setting up python3-mrcfile (1.5.3-3) ... 202s Setting up libhdf5-hl-100t64:ppc64el (1.10.10+repack-4ubuntu3) ... 202s Setting up libnetcdf19t64:ppc64el (1:4.9.2-6ubuntu1) ... 202s Setting up libxft2:ppc64el (2.3.6-1build1) ... 202s Setting up python3-scipy (1.13.1-5) ... 211s Setting up libpython3-dev:ppc64el (3.12.7-1) ... 211s Setting up g++-14-powerpc64le-linux-gnu (14.2.0-8ubuntu1) ... 211s Setting up python3-citeproc (0.6.0-3) ... 211s Setting up python3.13-dev (3.13.0-2) ... 211s Setting up po-debconf (1.0.21+nmu1) ... 211s Setting up libtk8.6:ppc64el (8.6.15-1) ... 211s Setting up python3-pandas-lib:ppc64el (2.2.3+dfsg-5) ... 211s Setting up python3.12-tk (3.12.7-3) ... 211s Setting up python3-sklearn-lib:ppc64el (1.4.2+dfsg-6) ... 211s Setting up python3-h5py-serial (3.11.0-5ubuntu1) ... 212s Setting up python3-gsd (3.3.0-1) ... 212s Setting up python3-mmtf (1.1.3-1) ... 212s Setting up fonts-urw-base35 (20200910-8) ... 213s Setting up libcairo2:ppc64el (1.18.2-2) ... 213s Setting up python3.13-tk (3.13.0-2) ... 213s Setting up python-mdanalysis-doc (2.7.0-5) ... 213s Setting up gcc-14 (14.2.0-8ubuntu1) ... 213s Setting up python3-pil:ppc64el (10.4.0-1ubuntu1) ... 213s Setting up python3-griddataformats (1.0.2-2) ... 214s Setting up python3-pandas (2.2.3+dfsg-5) ... 226s Setting up gcc-powerpc64le-linux-gnu (4:14.1.0-2ubuntu1) ... 226s Setting up libpython3-all-dev:ppc64el (3.12.7-1) ... 226s Setting up sphinx-common (7.4.7-4) ... 226s Setting up python3-dev (3.12.7-1) ... 226s Setting up python3-h5py (3.11.0-5ubuntu1) ... 226s Setting up python3-sklearn (1.4.2+dfsg-6) ... 231s Setting up python3-cftime (1.6.4-1) ... 231s Setting up cpp (4:14.1.0-2ubuntu1) ... 231s Setting up g++-14 (14.2.0-8ubuntu1) ... 231s Setting up python3-netcdf4 (1.7.2-1) ... 231s Setting up g++-powerpc64le-linux-gnu (4:14.1.0-2ubuntu1) ... 231s Setting up python3-all-dev (3.12.7-1) ... 231s Setting up tk8.6-blt2.5 (2.5.3+dfsg-7build1) ... 231s Setting up python3-cairo (1.26.1-2) ... 231s Setting up python3-duecredit (0.10.2-2) ... 232s Setting up libtool (2.4.7-7build1) ... 232s Setting up blt (2.5.3+dfsg-7build1) ... 232s Setting up python3-tk:ppc64el (3.12.7-1) ... 232s Setting up gcc (4:14.1.0-2ubuntu1) ... 232s Setting up dh-autoreconf (20) ... 232s Setting up python3-pil.imagetk:ppc64el (10.4.0-1ubuntu1) ... 232s Setting up python3-rlpycairo (0.3.0-3) ... 232s Setting up python3-reportlab (4.2.5-1) ... 234s Setting up g++ (4:14.1.0-2ubuntu1) ... 234s update-alternatives: using /usr/bin/g++ to provide /usr/bin/c++ (c++) in auto mode 234s Setting up build-essential (12.10ubuntu1) ... 234s Setting up debhelper (13.20ubuntu1) ... 234s Setting up python3-ufolib2 (0.16.1+dfsg1-1) ... 234s Setting up python3-fonttools (4.46.0-1build2) ... 236s Setting up python3-matplotlib (3.8.3-3) ... 240s Setting up python3-mdanalysis (2.7.0-5) ... 241s Setting up python3-seaborn (0.13.2-4) ... 242s Processing triggers for systemd (256.5-2ubuntu4) ... 242s Processing triggers for man-db (2.12.1-3) ... 243s Processing triggers for install-info (7.1.1-1) ... 244s Processing triggers for libc-bin (2.40-1ubuntu3) ... 244s Processing triggers for sgml-base (1.31) ... 244s Setting up docutils-common (0.21.2+dfsg-2) ... 244s Setting up w3c-sgml-lib (1.3-3) ... 281s Setting up python3-biopython (1.84+dfsg-4) ... 284s Processing triggers for sgml-base (1.31) ... 284s Setting up python3-docutils (0.21.2+dfsg-2) ... 285s Setting up python3-pybtex-docutils (1.0.2-1) ... 285s Setting up python3-sphinx (7.4.7-4) ... 287s Setting up python3-sphinxcontrib.bibtex (2.6.2-1) ... 287s Setting up python3-sphinx-sitemap (2.6.0-1) ... 287s Setting up python3-sphinxcontrib.jquery (4.1-5) ... 287s Setting up python3-sphinx-rtd-theme (3.0.1+dfsg-1) ... 288s Setting up python3-msmb-theme (1.2.0-4) ... 288s Setting up autopkgtest-satdep (0) ... 295s (Reading database ... 100552 files and directories currently installed.) 295s Removing autopkgtest-satdep (0) ... 295s autopkgtest [18:50:38]: test test-mdanalysis: [----------------------- 296s skipping tests with SKIP_TEST_LIST= 302s ============================= test session starts ============================== 302s platform linux -- Python 3.13.0, pytest-8.3.3, pluggy-1.5.0 302s rootdir: /tmp/autopkgtest.vhk5Bq/build.ka4/src 302s plugins: typeguard-4.4.1, hypothesis-6.116.0 302s collected 0 items / 163 errors 302s 302s ==================================== ERRORS ==================================== 302s ______ ERROR collecting testsuite/MDAnalysisTests/analysis/test_align.py _______ 302s ImportError while importing test module '/tmp/autopkgtest.vhk5Bq/build.ka4/src/testsuite/MDAnalysisTests/analysis/test_align.py'. 302s Hint: make sure your test modules/packages have valid Python names. 302s Traceback: 302s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 302s from . import multiarray 302s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 302s from . import overrides 302s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 302s from numpy.core._multiarray_umath import ( 302s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 302s 302s During handling of the above exception, another exception occurred: 302s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 302s from numpy.__config__ import show as show_config 302s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 302s from numpy.core._multiarray_umath import ( 302s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 302s raise ImportError(msg) 302s E ImportError: 302s E 302s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 302s E 302s E Importing the numpy C-extensions failed. This error can happen for 302s E many reasons, often due to issues with your setup or how NumPy was 302s E installed. 302s E 302s E We have compiled some common reasons and troubleshooting tips at: 302s E 302s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 302s E 302s E Please note and check the following: 302s E 302s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 302s E * The NumPy version is: "1.26.4" 302s E 302s E and make sure that they are the versions you expect. 302s E Please carefully study the documentation linked above for further help. 302s E 302s E Original error was: No module named 'numpy.core._multiarray_umath' 302s 302s The above exception was the direct cause of the following exception: 302s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 302s return _bootstrap._gcd_import(name[level:], package, level) 302s testsuite/MDAnalysisTests/__init__.py:125: in 302s from MDAnalysisTests.util import ( 302s testsuite/MDAnalysisTests/util.py:41: in 302s from numpy.testing import assert_warns 302s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 302s raise ImportError(msg) from e 302s E ImportError: Error importing numpy: you should not try to import numpy from 302s E its source directory; please exit the numpy source tree, and relaunch 302s E your python interpreter from there. 302s _ ERROR collecting testsuite/MDAnalysisTests/analysis/test_atomicdistances.py __ 302s ImportError while importing test module '/tmp/autopkgtest.vhk5Bq/build.ka4/src/testsuite/MDAnalysisTests/analysis/test_atomicdistances.py'. 302s Hint: make sure your test modules/packages have valid Python names. 302s Traceback: 302s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 302s from . import multiarray 302s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 302s from . import overrides 302s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 302s from numpy.core._multiarray_umath import ( 302s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 302s 302s During handling of the above exception, another exception occurred: 302s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 302s from numpy.__config__ import show as show_config 302s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 302s from numpy.core._multiarray_umath import ( 302s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 302s raise ImportError(msg) 302s E ImportError: 302s E 302s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 302s E 302s E Importing the numpy C-extensions failed. This error can happen for 302s E many reasons, often due to issues with your setup or how NumPy was 302s E installed. 302s E 302s E We have compiled some common reasons and troubleshooting tips at: 302s E 302s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 302s E 302s E Please note and check the following: 302s E 302s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 302s E * The NumPy version is: "1.26.4" 302s E 302s E and make sure that they are the versions you expect. 302s E Please carefully study the documentation linked above for further help. 302s E 302s E Original error was: No module named 'numpy.core._multiarray_umath' 302s 302s The above exception was the direct cause of the following exception: 302s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 302s return _bootstrap._gcd_import(name[level:], package, level) 302s testsuite/MDAnalysisTests/__init__.py:125: in 302s from MDAnalysisTests.util import ( 302s testsuite/MDAnalysisTests/util.py:41: in 302s from numpy.testing import assert_warns 302s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 302s raise ImportError(msg) from e 302s E ImportError: Error importing numpy: you should not try to import numpy from 302s E its source directory; please exit the numpy source tree, and relaunch 302s E your python interpreter from there. 302s _______ ERROR collecting testsuite/MDAnalysisTests/analysis/test_base.py _______ 302s ImportError while importing test module '/tmp/autopkgtest.vhk5Bq/build.ka4/src/testsuite/MDAnalysisTests/analysis/test_base.py'. 302s Hint: make sure your test modules/packages have valid Python names. 302s Traceback: 302s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 302s from . import multiarray 302s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 302s from . import overrides 302s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 302s from numpy.core._multiarray_umath import ( 302s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 302s 302s During handling of the above exception, another exception occurred: 302s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 302s from numpy.__config__ import show as show_config 302s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 302s from numpy.core._multiarray_umath import ( 302s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 302s raise ImportError(msg) 302s E ImportError: 302s E 302s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 302s E 302s E Importing the numpy C-extensions failed. This error can happen for 302s E many reasons, often due to issues with your setup or how NumPy was 302s E installed. 302s E 302s E We have compiled some common reasons and troubleshooting tips at: 302s E 302s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 302s E 302s E Please note and check the following: 302s E 302s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 302s E * The NumPy version is: "1.26.4" 302s E 302s E and make sure that they are the versions you expect. 302s E Please carefully study the documentation linked above for further help. 302s E 302s E Original error was: No module named 'numpy.core._multiarray_umath' 302s 302s The above exception was the direct cause of the following exception: 302s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 302s return _bootstrap._gcd_import(name[level:], package, level) 302s testsuite/MDAnalysisTests/__init__.py:125: in 302s from MDAnalysisTests.util import ( 302s testsuite/MDAnalysisTests/util.py:41: in 302s from numpy.testing import assert_warns 302s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 302s raise ImportError(msg) from e 302s E ImportError: Error importing numpy: you should not try to import numpy from 302s E its source directory; please exit the numpy source tree, and relaunch 302s E your python interpreter from there. 302s _______ ERROR collecting testsuite/MDAnalysisTests/analysis/test_bat.py ________ 302s ImportError while importing test module '/tmp/autopkgtest.vhk5Bq/build.ka4/src/testsuite/MDAnalysisTests/analysis/test_bat.py'. 302s Hint: make sure your test modules/packages have valid Python names. 302s Traceback: 302s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 302s from . import multiarray 302s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 302s from . import overrides 302s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 302s from numpy.core._multiarray_umath import ( 302s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 302s 302s During handling of the above exception, another exception occurred: 302s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 302s from numpy.__config__ import show as show_config 302s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 302s from numpy.core._multiarray_umath import ( 302s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 302s raise ImportError(msg) 302s E ImportError: 302s E 302s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 302s E 302s E Importing the numpy C-extensions failed. This error can happen for 302s E many reasons, often due to issues with your setup or how NumPy was 302s E installed. 302s E 302s E We have compiled some common reasons and troubleshooting tips at: 302s E 302s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 302s E 302s E Please note and check the following: 302s E 302s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 302s E * The NumPy version is: "1.26.4" 302s E 302s E and make sure that they are the versions you expect. 302s E Please carefully study the documentation linked above for further help. 302s E 302s E Original error was: No module named 'numpy.core._multiarray_umath' 302s 302s The above exception was the direct cause of the following exception: 302s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 302s return _bootstrap._gcd_import(name[level:], package, level) 302s testsuite/MDAnalysisTests/__init__.py:125: in 302s from MDAnalysisTests.util import ( 302s testsuite/MDAnalysisTests/util.py:41: in 302s from numpy.testing import assert_warns 302s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 302s raise ImportError(msg) from e 302s E ImportError: Error importing numpy: you should not try to import numpy from 302s E its source directory; please exit the numpy source tree, and relaunch 302s E your python interpreter from there. 302s _____ ERROR collecting testsuite/MDAnalysisTests/analysis/test_contacts.py _____ 302s ImportError while importing test module '/tmp/autopkgtest.vhk5Bq/build.ka4/src/testsuite/MDAnalysisTests/analysis/test_contacts.py'. 302s Hint: make sure your test modules/packages have valid Python names. 302s Traceback: 302s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 302s from . import multiarray 302s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 302s from . import overrides 302s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 302s from numpy.core._multiarray_umath import ( 302s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 302s 302s During handling of the above exception, another exception occurred: 302s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 302s from numpy.__config__ import show as show_config 302s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 302s from numpy.core._multiarray_umath import ( 302s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 302s raise ImportError(msg) 302s E ImportError: 302s E 302s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 302s E 302s E Importing the numpy C-extensions failed. This error can happen for 302s E many reasons, often due to issues with your setup or how NumPy was 302s E installed. 302s E 302s E We have compiled some common reasons and troubleshooting tips at: 302s E 302s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 302s E 302s E Please note and check the following: 302s E 302s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 302s E * The NumPy version is: "1.26.4" 302s E 302s E and make sure that they are the versions you expect. 302s E Please carefully study the documentation linked above for further help. 302s E 302s E Original error was: No module named 'numpy.core._multiarray_umath' 302s 302s The above exception was the direct cause of the following exception: 302s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 302s return _bootstrap._gcd_import(name[level:], package, level) 302s testsuite/MDAnalysisTests/__init__.py:125: in 302s from MDAnalysisTests.util import ( 302s testsuite/MDAnalysisTests/util.py:41: in 302s from numpy.testing import assert_warns 302s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 302s raise ImportError(msg) from e 302s E ImportError: Error importing numpy: you should not try to import numpy from 302s E its source directory; please exit the numpy source tree, and relaunch 302s E your python interpreter from there. 302s _______ ERROR collecting testsuite/MDAnalysisTests/analysis/test_data.py _______ 302s ImportError while importing test module '/tmp/autopkgtest.vhk5Bq/build.ka4/src/testsuite/MDAnalysisTests/analysis/test_data.py'. 302s Hint: make sure your test modules/packages have valid Python names. 302s Traceback: 302s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 302s from . import multiarray 302s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 302s from . import overrides 302s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 302s from numpy.core._multiarray_umath import ( 302s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 302s 302s During handling of the above exception, another exception occurred: 302s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 302s from numpy.__config__ import show as show_config 302s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 302s from numpy.core._multiarray_umath import ( 302s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 302s raise ImportError(msg) 302s E ImportError: 302s E 302s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 302s E 302s E Importing the numpy C-extensions failed. This error can happen for 302s E many reasons, often due to issues with your setup or how NumPy was 302s E installed. 302s E 302s E We have compiled some common reasons and troubleshooting tips at: 302s E 302s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 302s E 302s E Please note and check the following: 302s E 302s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 302s E * The NumPy version is: "1.26.4" 302s E 302s E and make sure that they are the versions you expect. 302s E Please carefully study the documentation linked above for further help. 302s E 302s E Original error was: No module named 'numpy.core._multiarray_umath' 302s 302s The above exception was the direct cause of the following exception: 302s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 302s return _bootstrap._gcd_import(name[level:], package, level) 302s testsuite/MDAnalysisTests/__init__.py:125: in 302s from MDAnalysisTests.util import ( 302s testsuite/MDAnalysisTests/util.py:41: in 302s from numpy.testing import assert_warns 302s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 302s raise ImportError(msg) from e 302s E ImportError: Error importing numpy: you should not try to import numpy from 302s E its source directory; please exit the numpy source tree, and relaunch 302s E your python interpreter from there. 302s _____ ERROR collecting testsuite/MDAnalysisTests/analysis/test_density.py ______ 302s ImportError while importing test module '/tmp/autopkgtest.vhk5Bq/build.ka4/src/testsuite/MDAnalysisTests/analysis/test_density.py'. 302s Hint: make sure your test modules/packages have valid Python names. 302s Traceback: 302s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 302s from . import multiarray 302s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 302s from . import overrides 302s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 302s from numpy.core._multiarray_umath import ( 302s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 302s 302s During handling of the above exception, another exception occurred: 302s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 302s from numpy.__config__ import show as show_config 302s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 302s from numpy.core._multiarray_umath import ( 302s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 302s raise ImportError(msg) 302s E ImportError: 302s E 302s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 302s E 302s E Importing the numpy C-extensions failed. This error can happen for 302s E many reasons, often due to issues with your setup or how NumPy was 302s E installed. 302s E 302s E We have compiled some common reasons and troubleshooting tips at: 302s E 302s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 302s E 302s E Please note and check the following: 302s E 302s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 302s E * The NumPy version is: "1.26.4" 302s E 302s E and make sure that they are the versions you expect. 302s E Please carefully study the documentation linked above for further help. 302s E 302s E Original error was: No module named 'numpy.core._multiarray_umath' 302s 302s The above exception was the direct cause of the following exception: 302s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 302s return _bootstrap._gcd_import(name[level:], package, level) 302s testsuite/MDAnalysisTests/__init__.py:125: in 302s from MDAnalysisTests.util import ( 302s testsuite/MDAnalysisTests/util.py:41: in 302s from numpy.testing import assert_warns 302s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 302s raise ImportError(msg) from e 302s E ImportError: Error importing numpy: you should not try to import numpy from 302s E its source directory; please exit the numpy source tree, and relaunch 302s E your python interpreter from there. 302s ____ ERROR collecting testsuite/MDAnalysisTests/analysis/test_dielectric.py ____ 302s ImportError while importing test module '/tmp/autopkgtest.vhk5Bq/build.ka4/src/testsuite/MDAnalysisTests/analysis/test_dielectric.py'. 302s Hint: make sure your test modules/packages have valid Python names. 302s Traceback: 302s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 302s from . import multiarray 302s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 302s from . import overrides 302s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 302s from numpy.core._multiarray_umath import ( 302s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 302s 302s During handling of the above exception, another exception occurred: 302s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 302s from numpy.__config__ import show as show_config 302s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 302s from numpy.core._multiarray_umath import ( 302s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 302s raise ImportError(msg) 302s E ImportError: 302s E 302s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 302s E 302s E Importing the numpy C-extensions failed. This error can happen for 302s E many reasons, often due to issues with your setup or how NumPy was 302s E installed. 302s E 302s E We have compiled some common reasons and troubleshooting tips at: 302s E 302s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 302s E 302s E Please note and check the following: 302s E 302s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 302s E * The NumPy version is: "1.26.4" 302s E 302s E and make sure that they are the versions you expect. 302s E Please carefully study the documentation linked above for further help. 302s E 302s E Original error was: No module named 'numpy.core._multiarray_umath' 302s 302s The above exception was the direct cause of the following exception: 302s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 302s return _bootstrap._gcd_import(name[level:], package, level) 302s testsuite/MDAnalysisTests/__init__.py:125: in 302s from MDAnalysisTests.util import ( 302s testsuite/MDAnalysisTests/util.py:41: in 302s from numpy.testing import assert_warns 302s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 302s raise ImportError(msg) from e 302s E ImportError: Error importing numpy: you should not try to import numpy from 302s E its source directory; please exit the numpy source tree, and relaunch 302s E your python interpreter from there. 302s ___ ERROR collecting testsuite/MDAnalysisTests/analysis/test_diffusionmap.py ___ 302s ImportError while importing test module '/tmp/autopkgtest.vhk5Bq/build.ka4/src/testsuite/MDAnalysisTests/analysis/test_diffusionmap.py'. 302s Hint: make sure your test modules/packages have valid Python names. 302s Traceback: 302s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 302s from . import multiarray 302s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 302s from . import overrides 302s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 302s from numpy.core._multiarray_umath import ( 302s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 302s 302s During handling of the above exception, another exception occurred: 302s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 302s from numpy.__config__ import show as show_config 302s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 302s from numpy.core._multiarray_umath import ( 302s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 302s raise ImportError(msg) 302s E ImportError: 302s E 302s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 302s E 302s E Importing the numpy C-extensions failed. This error can happen for 302s E many reasons, often due to issues with your setup or how NumPy was 302s E installed. 302s E 302s E We have compiled some common reasons and troubleshooting tips at: 302s E 302s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 302s E 302s E Please note and check the following: 302s E 302s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 302s E * The NumPy version is: "1.26.4" 302s E 302s E and make sure that they are the versions you expect. 302s E Please carefully study the documentation linked above for further help. 302s E 302s E Original error was: No module named 'numpy.core._multiarray_umath' 302s 302s The above exception was the direct cause of the following exception: 302s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 302s return _bootstrap._gcd_import(name[level:], package, level) 302s testsuite/MDAnalysisTests/__init__.py:125: in 302s from MDAnalysisTests.util import ( 302s testsuite/MDAnalysisTests/util.py:41: in 302s from numpy.testing import assert_warns 302s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 302s raise ImportError(msg) from e 302s E ImportError: Error importing numpy: you should not try to import numpy from 302s E its source directory; please exit the numpy source tree, and relaunch 302s E your python interpreter from there. 302s ____ ERROR collecting testsuite/MDAnalysisTests/analysis/test_dihedrals.py _____ 302s ImportError while importing test module '/tmp/autopkgtest.vhk5Bq/build.ka4/src/testsuite/MDAnalysisTests/analysis/test_dihedrals.py'. 302s Hint: make sure your test modules/packages have valid Python names. 302s Traceback: 302s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 302s from . import multiarray 302s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 302s from . import overrides 302s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 302s from numpy.core._multiarray_umath import ( 302s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 302s 302s During handling of the above exception, another exception occurred: 302s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 302s from numpy.__config__ import show as show_config 302s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 302s from numpy.core._multiarray_umath import ( 302s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 302s raise ImportError(msg) 302s E ImportError: 302s E 302s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 302s E 302s E Importing the numpy C-extensions failed. This error can happen for 302s E many reasons, often due to issues with your setup or how NumPy was 302s E installed. 302s E 302s E We have compiled some common reasons and troubleshooting tips at: 302s E 302s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 302s E 302s E Please note and check the following: 302s E 302s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 302s E * The NumPy version is: "1.26.4" 302s E 302s E and make sure that they are the versions you expect. 302s E Please carefully study the documentation linked above for further help. 302s E 302s E Original error was: No module named 'numpy.core._multiarray_umath' 302s 302s The above exception was the direct cause of the following exception: 302s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 302s return _bootstrap._gcd_import(name[level:], package, level) 302s testsuite/MDAnalysisTests/__init__.py:125: in 302s from MDAnalysisTests.util import ( 302s testsuite/MDAnalysisTests/util.py:41: in 302s from numpy.testing import assert_warns 302s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 302s raise ImportError(msg) from e 302s E ImportError: Error importing numpy: you should not try to import numpy from 302s E its source directory; please exit the numpy source tree, and relaunch 302s E your python interpreter from there. 302s ____ ERROR collecting testsuite/MDAnalysisTests/analysis/test_distances.py _____ 302s ImportError while importing test module '/tmp/autopkgtest.vhk5Bq/build.ka4/src/testsuite/MDAnalysisTests/analysis/test_distances.py'. 302s Hint: make sure your test modules/packages have valid Python names. 302s Traceback: 302s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 302s from . import multiarray 302s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 302s from . import overrides 302s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 302s from numpy.core._multiarray_umath import ( 302s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 302s 302s During handling of the above exception, another exception occurred: 302s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 302s from numpy.__config__ import show as show_config 302s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 302s from numpy.core._multiarray_umath import ( 302s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 302s raise ImportError(msg) 302s E ImportError: 302s E 302s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 302s E 302s E Importing the numpy C-extensions failed. This error can happen for 302s E many reasons, often due to issues with your setup or how NumPy was 302s E installed. 302s E 302s E We have compiled some common reasons and troubleshooting tips at: 302s E 302s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 302s E 302s E Please note and check the following: 302s E 302s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 302s E * The NumPy version is: "1.26.4" 302s E 302s E and make sure that they are the versions you expect. 302s E Please carefully study the documentation linked above for further help. 302s E 302s E Original error was: No module named 'numpy.core._multiarray_umath' 302s 302s The above exception was the direct cause of the following exception: 302s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 302s return _bootstrap._gcd_import(name[level:], package, level) 302s testsuite/MDAnalysisTests/__init__.py:125: in 302s from MDAnalysisTests.util import ( 302s testsuite/MDAnalysisTests/util.py:41: in 302s from numpy.testing import assert_warns 302s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 302s raise ImportError(msg) from e 302s E ImportError: Error importing numpy: you should not try to import numpy from 302s E its source directory; please exit the numpy source tree, and relaunch 302s E your python interpreter from there. 302s ______ ERROR collecting testsuite/MDAnalysisTests/analysis/test_encore.py ______ 302s ImportError while importing test module '/tmp/autopkgtest.vhk5Bq/build.ka4/src/testsuite/MDAnalysisTests/analysis/test_encore.py'. 302s Hint: make sure your test modules/packages have valid Python names. 302s Traceback: 302s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 302s from . import multiarray 302s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 302s from . import overrides 302s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 302s from numpy.core._multiarray_umath import ( 302s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 302s 302s During handling of the above exception, another exception occurred: 302s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 302s from numpy.__config__ import show as show_config 302s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 302s from numpy.core._multiarray_umath import ( 302s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 302s raise ImportError(msg) 302s E ImportError: 302s E 302s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 302s E 302s E Importing the numpy C-extensions failed. This error can happen for 302s E many reasons, often due to issues with your setup or how NumPy was 302s E installed. 302s E 302s E We have compiled some common reasons and troubleshooting tips at: 302s E 302s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 302s E 302s E Please note and check the following: 302s E 302s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 302s E * The NumPy version is: "1.26.4" 302s E 302s E and make sure that they are the versions you expect. 302s E Please carefully study the documentation linked above for further help. 302s E 302s E Original error was: No module named 'numpy.core._multiarray_umath' 302s 302s The above exception was the direct cause of the following exception: 302s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 302s return _bootstrap._gcd_import(name[level:], package, level) 302s testsuite/MDAnalysisTests/__init__.py:125: in 302s from MDAnalysisTests.util import ( 302s testsuite/MDAnalysisTests/util.py:41: in 302s from numpy.testing import assert_warns 302s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 302s raise ImportError(msg) from e 302s E ImportError: Error importing numpy: you should not try to import numpy from 302s E its source directory; please exit the numpy source tree, and relaunch 302s E your python interpreter from there. 302s _______ ERROR collecting testsuite/MDAnalysisTests/analysis/test_gnm.py ________ 302s ImportError while importing test module '/tmp/autopkgtest.vhk5Bq/build.ka4/src/testsuite/MDAnalysisTests/analysis/test_gnm.py'. 302s Hint: make sure your test modules/packages have valid Python names. 302s Traceback: 302s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 302s from . import multiarray 302s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 302s from . import overrides 302s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 302s from numpy.core._multiarray_umath import ( 302s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 302s 302s During handling of the above exception, another exception occurred: 302s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 302s from numpy.__config__ import show as show_config 302s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 302s from numpy.core._multiarray_umath import ( 302s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 302s raise ImportError(msg) 302s E ImportError: 302s E 302s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 302s E 302s E Importing the numpy C-extensions failed. This error can happen for 302s E many reasons, often due to issues with your setup or how NumPy was 302s E installed. 302s E 302s E We have compiled some common reasons and troubleshooting tips at: 302s E 302s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 302s E 302s E Please note and check the following: 302s E 302s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 302s E * The NumPy version is: "1.26.4" 302s E 302s E and make sure that they are the versions you expect. 302s E Please carefully study the documentation linked above for further help. 302s E 302s E Original error was: No module named 'numpy.core._multiarray_umath' 302s 302s The above exception was the direct cause of the following exception: 302s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 302s return _bootstrap._gcd_import(name[level:], package, level) 302s testsuite/MDAnalysisTests/__init__.py:125: in 302s from MDAnalysisTests.util import ( 302s testsuite/MDAnalysisTests/util.py:41: in 302s from numpy.testing import assert_warns 302s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 302s raise ImportError(msg) from e 302s E ImportError: Error importing numpy: you should not try to import numpy from 302s E its source directory; please exit the numpy source tree, and relaunch 302s E your python interpreter from there. 302s __ ERROR collecting testsuite/MDAnalysisTests/analysis/test_helix_analysis.py __ 302s ImportError while importing test module '/tmp/autopkgtest.vhk5Bq/build.ka4/src/testsuite/MDAnalysisTests/analysis/test_helix_analysis.py'. 302s Hint: make sure your test modules/packages have valid Python names. 302s Traceback: 302s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 302s from . import multiarray 302s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 302s from . import overrides 302s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 302s from numpy.core._multiarray_umath import ( 302s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 302s 302s During handling of the above exception, another exception occurred: 302s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 302s from numpy.__config__ import show as show_config 302s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 302s from numpy.core._multiarray_umath import ( 302s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 302s raise ImportError(msg) 302s E ImportError: 302s E 302s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 302s E 302s E Importing the numpy C-extensions failed. This error can happen for 302s E many reasons, often due to issues with your setup or how NumPy was 302s E installed. 302s E 302s E We have compiled some common reasons and troubleshooting tips at: 302s E 302s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 302s E 302s E Please note and check the following: 302s E 302s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 302s E * The NumPy version is: "1.26.4" 302s E 302s E and make sure that they are the versions you expect. 302s E Please carefully study the documentation linked above for further help. 302s E 302s E Original error was: No module named 'numpy.core._multiarray_umath' 302s 302s The above exception was the direct cause of the following exception: 302s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 302s return _bootstrap._gcd_import(name[level:], package, level) 302s testsuite/MDAnalysisTests/__init__.py:125: in 302s from MDAnalysisTests.util import ( 302s testsuite/MDAnalysisTests/util.py:41: in 302s from numpy.testing import assert_warns 302s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 302s raise ImportError(msg) from e 302s E ImportError: Error importing numpy: you should not try to import numpy from 302s E its source directory; please exit the numpy source tree, and relaunch 302s E your python interpreter from there. 302s ______ ERROR collecting testsuite/MDAnalysisTests/analysis/test_hole2.py _______ 302s ImportError while importing test module '/tmp/autopkgtest.vhk5Bq/build.ka4/src/testsuite/MDAnalysisTests/analysis/test_hole2.py'. 302s Hint: make sure your test modules/packages have valid Python names. 302s Traceback: 302s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 302s from . import multiarray 302s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 302s from . import overrides 302s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 302s from numpy.core._multiarray_umath import ( 302s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 302s 302s During handling of the above exception, another exception occurred: 302s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 302s from numpy.__config__ import show as show_config 302s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 302s from numpy.core._multiarray_umath import ( 302s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 302s raise ImportError(msg) 302s E ImportError: 302s E 302s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 302s E 302s E Importing the numpy C-extensions failed. This error can happen for 302s E many reasons, often due to issues with your setup or how NumPy was 302s E installed. 302s E 302s E We have compiled some common reasons and troubleshooting tips at: 302s E 302s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 302s E 302s E Please note and check the following: 302s E 302s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 302s E * The NumPy version is: "1.26.4" 302s E 302s E and make sure that they are the versions you expect. 302s E Please carefully study the documentation linked above for further help. 302s E 302s E Original error was: No module named 'numpy.core._multiarray_umath' 302s 302s The above exception was the direct cause of the following exception: 302s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 302s return _bootstrap._gcd_import(name[level:], package, level) 302s testsuite/MDAnalysisTests/__init__.py:125: in 302s from MDAnalysisTests.util import ( 302s testsuite/MDAnalysisTests/util.py:41: in 302s from numpy.testing import assert_warns 302s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 302s raise ImportError(msg) from e 302s E ImportError: Error importing numpy: you should not try to import numpy from 302s E its source directory; please exit the numpy source tree, and relaunch 302s E your python interpreter from there. 302s _ ERROR collecting testsuite/MDAnalysisTests/analysis/test_hydrogenbondautocorrel.py _ 302s ImportError while importing test module '/tmp/autopkgtest.vhk5Bq/build.ka4/src/testsuite/MDAnalysisTests/analysis/test_hydrogenbondautocorrel.py'. 302s Hint: make sure your test modules/packages have valid Python names. 302s Traceback: 302s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 302s from . import multiarray 302s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 302s from . import overrides 302s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 302s from numpy.core._multiarray_umath import ( 302s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 302s 302s During handling of the above exception, another exception occurred: 302s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 302s from numpy.__config__ import show as show_config 302s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 302s from numpy.core._multiarray_umath import ( 302s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 302s raise ImportError(msg) 302s E ImportError: 302s E 302s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 302s E 302s E Importing the numpy C-extensions failed. This error can happen for 302s E many reasons, often due to issues with your setup or how NumPy was 302s E installed. 302s E 302s E We have compiled some common reasons and troubleshooting tips at: 302s E 302s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 302s E 302s E Please note and check the following: 302s E 302s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 302s E * The NumPy version is: "1.26.4" 302s E 302s E and make sure that they are the versions you expect. 302s E Please carefully study the documentation linked above for further help. 302s E 302s E Original error was: No module named 'numpy.core._multiarray_umath' 302s 302s The above exception was the direct cause of the following exception: 302s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 302s return _bootstrap._gcd_import(name[level:], package, level) 302s testsuite/MDAnalysisTests/__init__.py:125: in 302s from MDAnalysisTests.util import ( 302s testsuite/MDAnalysisTests/util.py:41: in 302s from numpy.testing import assert_warns 302s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 302s raise ImportError(msg) from e 302s E ImportError: Error importing numpy: you should not try to import numpy from 302s E its source directory; please exit the numpy source tree, and relaunch 302s E your python interpreter from there. 302s _ ERROR collecting testsuite/MDAnalysisTests/analysis/test_hydrogenbondautocorrel_deprecated.py _ 302s ImportError while importing test module '/tmp/autopkgtest.vhk5Bq/build.ka4/src/testsuite/MDAnalysisTests/analysis/test_hydrogenbondautocorrel_deprecated.py'. 302s Hint: make sure your test modules/packages have valid Python names. 302s Traceback: 302s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 302s from . import multiarray 302s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 302s from . import overrides 302s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 302s from numpy.core._multiarray_umath import ( 302s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 302s 302s During handling of the above exception, another exception occurred: 302s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 302s from numpy.__config__ import show as show_config 302s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 302s from numpy.core._multiarray_umath import ( 302s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 302s raise ImportError(msg) 302s E ImportError: 302s E 302s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 302s E 302s E Importing the numpy C-extensions failed. This error can happen for 302s E many reasons, often due to issues with your setup or how NumPy was 302s E installed. 302s E 302s E We have compiled some common reasons and troubleshooting tips at: 302s E 302s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 302s E 302s E Please note and check the following: 302s E 302s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 302s E * The NumPy version is: "1.26.4" 302s E 302s E and make sure that they are the versions you expect. 302s E Please carefully study the documentation linked above for further help. 302s E 302s E Original error was: No module named 'numpy.core._multiarray_umath' 302s 302s The above exception was the direct cause of the following exception: 302s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 302s return _bootstrap._gcd_import(name[level:], package, level) 302s testsuite/MDAnalysisTests/__init__.py:125: in 302s from MDAnalysisTests.util import ( 302s testsuite/MDAnalysisTests/util.py:41: in 302s from numpy.testing import assert_warns 302s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 302s raise ImportError(msg) from e 302s E ImportError: Error importing numpy: you should not try to import numpy from 302s E its source directory; please exit the numpy source tree, and relaunch 302s E your python interpreter from there. 302s _ ERROR collecting testsuite/MDAnalysisTests/analysis/test_hydrogenbonds_analysis.py _ 302s ImportError while importing test module '/tmp/autopkgtest.vhk5Bq/build.ka4/src/testsuite/MDAnalysisTests/analysis/test_hydrogenbonds_analysis.py'. 302s Hint: make sure your test modules/packages have valid Python names. 302s Traceback: 302s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 302s from . import multiarray 302s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 302s from . import overrides 302s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 302s from numpy.core._multiarray_umath import ( 302s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 302s 302s During handling of the above exception, another exception occurred: 302s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 302s from numpy.__config__ import show as show_config 302s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 302s from numpy.core._multiarray_umath import ( 302s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 302s raise ImportError(msg) 302s E ImportError: 302s E 302s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 302s E 302s E Importing the numpy C-extensions failed. This error can happen for 302s E many reasons, often due to issues with your setup or how NumPy was 302s E installed. 302s E 302s E We have compiled some common reasons and troubleshooting tips at: 302s E 302s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 302s E 302s E Please note and check the following: 302s E 302s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 302s E * The NumPy version is: "1.26.4" 302s E 302s E and make sure that they are the versions you expect. 302s E Please carefully study the documentation linked above for further help. 302s E 302s E Original error was: No module named 'numpy.core._multiarray_umath' 302s 302s The above exception was the direct cause of the following exception: 302s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 302s return _bootstrap._gcd_import(name[level:], package, level) 302s testsuite/MDAnalysisTests/__init__.py:125: in 302s from MDAnalysisTests.util import ( 302s testsuite/MDAnalysisTests/util.py:41: in 302s from numpy.testing import assert_warns 302s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 302s raise ImportError(msg) from e 302s E ImportError: Error importing numpy: you should not try to import numpy from 302s E its source directory; please exit the numpy source tree, and relaunch 302s E your python interpreter from there. 302s _____ ERROR collecting testsuite/MDAnalysisTests/analysis/test_leaflet.py ______ 302s ImportError while importing test module '/tmp/autopkgtest.vhk5Bq/build.ka4/src/testsuite/MDAnalysisTests/analysis/test_leaflet.py'. 302s Hint: make sure your test modules/packages have valid Python names. 302s Traceback: 302s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 302s from . import multiarray 302s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 302s from . import overrides 302s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 302s from numpy.core._multiarray_umath import ( 302s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 302s 302s During handling of the above exception, another exception occurred: 302s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 302s from numpy.__config__ import show as show_config 302s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 302s from numpy.core._multiarray_umath import ( 302s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 302s raise ImportError(msg) 302s E ImportError: 302s E 302s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 302s E 302s E Importing the numpy C-extensions failed. This error can happen for 302s E many reasons, often due to issues with your setup or how NumPy was 302s E installed. 302s E 302s E We have compiled some common reasons and troubleshooting tips at: 302s E 302s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 302s E 302s E Please note and check the following: 302s E 302s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 302s E * The NumPy version is: "1.26.4" 302s E 302s E and make sure that they are the versions you expect. 302s E Please carefully study the documentation linked above for further help. 302s E 302s E Original error was: No module named 'numpy.core._multiarray_umath' 302s 302s The above exception was the direct cause of the following exception: 302s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 302s return _bootstrap._gcd_import(name[level:], package, level) 302s testsuite/MDAnalysisTests/__init__.py:125: in 302s from MDAnalysisTests.util import ( 302s testsuite/MDAnalysisTests/util.py:41: in 302s from numpy.testing import assert_warns 302s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 302s raise ImportError(msg) from e 302s E ImportError: Error importing numpy: you should not try to import numpy from 302s E its source directory; please exit the numpy source tree, and relaunch 302s E your python interpreter from there. 302s __ ERROR collecting testsuite/MDAnalysisTests/analysis/test_lineardensity.py ___ 302s ImportError while importing test module '/tmp/autopkgtest.vhk5Bq/build.ka4/src/testsuite/MDAnalysisTests/analysis/test_lineardensity.py'. 302s Hint: make sure your test modules/packages have valid Python names. 302s Traceback: 302s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 302s from . import multiarray 302s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 302s from . import overrides 302s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 302s from numpy.core._multiarray_umath import ( 302s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 302s 302s During handling of the above exception, another exception occurred: 302s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 302s from numpy.__config__ import show as show_config 302s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 302s from numpy.core._multiarray_umath import ( 302s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 302s raise ImportError(msg) 302s E ImportError: 302s E 302s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 302s E 302s E Importing the numpy C-extensions failed. This error can happen for 302s E many reasons, often due to issues with your setup or how NumPy was 302s E installed. 302s E 302s E We have compiled some common reasons and troubleshooting tips at: 302s E 302s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 302s E 302s E Please note and check the following: 302s E 302s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 302s E * The NumPy version is: "1.26.4" 302s E 302s E and make sure that they are the versions you expect. 302s E Please carefully study the documentation linked above for further help. 302s E 302s E Original error was: No module named 'numpy.core._multiarray_umath' 302s 302s The above exception was the direct cause of the following exception: 302s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 302s return _bootstrap._gcd_import(name[level:], package, level) 302s testsuite/MDAnalysisTests/__init__.py:125: in 302s from MDAnalysisTests.util import ( 302s testsuite/MDAnalysisTests/util.py:41: in 302s from numpy.testing import assert_warns 302s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 302s raise ImportError(msg) from e 302s E ImportError: Error importing numpy: you should not try to import numpy from 302s E its source directory; please exit the numpy source tree, and relaunch 302s E your python interpreter from there. 302s _______ ERROR collecting testsuite/MDAnalysisTests/analysis/test_msd.py ________ 302s ImportError while importing test module '/tmp/autopkgtest.vhk5Bq/build.ka4/src/testsuite/MDAnalysisTests/analysis/test_msd.py'. 302s Hint: make sure your test modules/packages have valid Python names. 302s Traceback: 302s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 302s from . import multiarray 302s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 302s from . import overrides 302s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 302s from numpy.core._multiarray_umath import ( 302s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 302s 302s During handling of the above exception, another exception occurred: 302s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 302s from numpy.__config__ import show as show_config 302s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 302s from numpy.core._multiarray_umath import ( 302s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 302s raise ImportError(msg) 302s E ImportError: 302s E 302s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 302s E 302s E Importing the numpy C-extensions failed. This error can happen for 302s E many reasons, often due to issues with your setup or how NumPy was 302s E installed. 302s E 302s E We have compiled some common reasons and troubleshooting tips at: 302s E 302s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 302s E 302s E Please note and check the following: 302s E 302s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 302s E * The NumPy version is: "1.26.4" 302s E 302s E and make sure that they are the versions you expect. 302s E Please carefully study the documentation linked above for further help. 302s E 302s E Original error was: No module named 'numpy.core._multiarray_umath' 302s 302s The above exception was the direct cause of the following exception: 302s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 302s return _bootstrap._gcd_import(name[level:], package, level) 302s testsuite/MDAnalysisTests/__init__.py:125: in 302s from MDAnalysisTests.util import ( 302s testsuite/MDAnalysisTests/util.py:41: in 302s from numpy.testing import assert_warns 302s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 302s raise ImportError(msg) from e 302s E ImportError: Error importing numpy: you should not try to import numpy from 302s E its source directory; please exit the numpy source tree, and relaunch 302s E your python interpreter from there. 302s ___ ERROR collecting testsuite/MDAnalysisTests/analysis/test_nucleicacids.py ___ 302s ImportError while importing test module '/tmp/autopkgtest.vhk5Bq/build.ka4/src/testsuite/MDAnalysisTests/analysis/test_nucleicacids.py'. 302s Hint: make sure your test modules/packages have valid Python names. 302s Traceback: 302s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 302s from . import multiarray 302s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 302s from . import overrides 302s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 302s from numpy.core._multiarray_umath import ( 302s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 302s 302s During handling of the above exception, another exception occurred: 302s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 302s from numpy.__config__ import show as show_config 302s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 302s from numpy.core._multiarray_umath import ( 302s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 302s raise ImportError(msg) 302s E ImportError: 302s E 302s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 302s E 302s E Importing the numpy C-extensions failed. This error can happen for 302s E many reasons, often due to issues with your setup or how NumPy was 302s E installed. 302s E 302s E We have compiled some common reasons and troubleshooting tips at: 302s E 302s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 302s E 302s E Please note and check the following: 302s E 302s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 302s E * The NumPy version is: "1.26.4" 302s E 302s E and make sure that they are the versions you expect. 302s E Please carefully study the documentation linked above for further help. 302s E 302s E Original error was: No module named 'numpy.core._multiarray_umath' 302s 302s The above exception was the direct cause of the following exception: 302s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 302s return _bootstrap._gcd_import(name[level:], package, level) 302s testsuite/MDAnalysisTests/__init__.py:125: in 302s from MDAnalysisTests.util import ( 302s testsuite/MDAnalysisTests/util.py:41: in 302s from numpy.testing import assert_warns 302s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 302s raise ImportError(msg) from e 302s E ImportError: Error importing numpy: you should not try to import numpy from 302s E its source directory; please exit the numpy source tree, and relaunch 302s E your python interpreter from there. 302s _____ ERROR collecting testsuite/MDAnalysisTests/analysis/test_nuclinfo.py _____ 302s ImportError while importing test module '/tmp/autopkgtest.vhk5Bq/build.ka4/src/testsuite/MDAnalysisTests/analysis/test_nuclinfo.py'. 302s Hint: make sure your test modules/packages have valid Python names. 302s Traceback: 302s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 302s from . import multiarray 302s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 302s from . import overrides 302s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 302s from numpy.core._multiarray_umath import ( 302s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 302s 302s During handling of the above exception, another exception occurred: 302s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 302s from numpy.__config__ import show as show_config 302s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 302s from numpy.core._multiarray_umath import ( 302s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 302s raise ImportError(msg) 302s E ImportError: 302s E 302s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 302s E 302s E Importing the numpy C-extensions failed. This error can happen for 302s E many reasons, often due to issues with your setup or how NumPy was 302s E installed. 302s E 302s E We have compiled some common reasons and troubleshooting tips at: 302s E 302s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 302s E 302s E Please note and check the following: 302s E 302s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 302s E * The NumPy version is: "1.26.4" 302s E 302s E and make sure that they are the versions you expect. 302s E Please carefully study the documentation linked above for further help. 302s E 302s E Original error was: No module named 'numpy.core._multiarray_umath' 302s 302s The above exception was the direct cause of the following exception: 302s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 302s return _bootstrap._gcd_import(name[level:], package, level) 302s testsuite/MDAnalysisTests/__init__.py:125: in 302s from MDAnalysisTests.util import ( 302s testsuite/MDAnalysisTests/util.py:41: in 302s from numpy.testing import assert_warns 302s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 302s raise ImportError(msg) from e 302s E ImportError: Error importing numpy: you should not try to import numpy from 302s E its source directory; please exit the numpy source tree, and relaunch 302s E your python interpreter from there. 302s _______ ERROR collecting testsuite/MDAnalysisTests/analysis/test_pca.py ________ 302s ImportError while importing test module '/tmp/autopkgtest.vhk5Bq/build.ka4/src/testsuite/MDAnalysisTests/analysis/test_pca.py'. 302s Hint: make sure your test modules/packages have valid Python names. 302s Traceback: 302s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 302s from . import multiarray 302s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 302s from . import overrides 302s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 302s from numpy.core._multiarray_umath import ( 302s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 302s 302s During handling of the above exception, another exception occurred: 302s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 302s from numpy.__config__ import show as show_config 302s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 302s from numpy.core._multiarray_umath import ( 302s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 302s raise ImportError(msg) 302s E ImportError: 302s E 302s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 302s E 302s E Importing the numpy C-extensions failed. This error can happen for 302s E many reasons, often due to issues with your setup or how NumPy was 302s E installed. 302s E 302s E We have compiled some common reasons and troubleshooting tips at: 302s E 302s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 302s E 302s E Please note and check the following: 302s E 302s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 302s E * The NumPy version is: "1.26.4" 302s E 302s E and make sure that they are the versions you expect. 302s E Please carefully study the documentation linked above for further help. 302s E 302s E Original error was: No module named 'numpy.core._multiarray_umath' 302s 302s The above exception was the direct cause of the following exception: 302s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 302s return _bootstrap._gcd_import(name[level:], package, level) 302s testsuite/MDAnalysisTests/__init__.py:125: in 302s from MDAnalysisTests.util import ( 302s testsuite/MDAnalysisTests/util.py:41: in 302s from numpy.testing import assert_warns 302s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 302s raise ImportError(msg) from e 302s E ImportError: Error importing numpy: you should not try to import numpy from 302s E its source directory; please exit the numpy source tree, and relaunch 302s E your python interpreter from there. 302s _ ERROR collecting testsuite/MDAnalysisTests/analysis/test_persistencelength.py _ 302s ImportError while importing test module '/tmp/autopkgtest.vhk5Bq/build.ka4/src/testsuite/MDAnalysisTests/analysis/test_persistencelength.py'. 302s Hint: make sure your test modules/packages have valid Python names. 302s Traceback: 302s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 302s from . import multiarray 302s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 302s from . import overrides 302s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 302s from numpy.core._multiarray_umath import ( 302s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 302s 302s During handling of the above exception, another exception occurred: 302s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 302s from numpy.__config__ import show as show_config 302s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 302s from numpy.core._multiarray_umath import ( 302s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 302s raise ImportError(msg) 302s E ImportError: 302s E 302s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 302s E 302s E Importing the numpy C-extensions failed. This error can happen for 302s E many reasons, often due to issues with your setup or how NumPy was 302s E installed. 302s E 302s E We have compiled some common reasons and troubleshooting tips at: 302s E 302s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 302s E 302s E Please note and check the following: 302s E 302s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 302s E * The NumPy version is: "1.26.4" 302s E 302s E and make sure that they are the versions you expect. 302s E Please carefully study the documentation linked above for further help. 302s E 302s E Original error was: No module named 'numpy.core._multiarray_umath' 302s 302s The above exception was the direct cause of the following exception: 302s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 302s return _bootstrap._gcd_import(name[level:], package, level) 302s testsuite/MDAnalysisTests/__init__.py:125: in 302s from MDAnalysisTests.util import ( 302s testsuite/MDAnalysisTests/util.py:41: in 302s from numpy.testing import assert_warns 302s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 302s raise ImportError(msg) from e 302s E ImportError: Error importing numpy: you should not try to import numpy from 302s E its source directory; please exit the numpy source tree, and relaunch 302s E your python interpreter from there. 302s _______ ERROR collecting testsuite/MDAnalysisTests/analysis/test_psa.py ________ 302s ImportError while importing test module '/tmp/autopkgtest.vhk5Bq/build.ka4/src/testsuite/MDAnalysisTests/analysis/test_psa.py'. 302s Hint: make sure your test modules/packages have valid Python names. 302s Traceback: 302s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 302s from . import multiarray 302s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 302s from . import overrides 302s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 302s from numpy.core._multiarray_umath import ( 302s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 302s 302s During handling of the above exception, another exception occurred: 302s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 302s from numpy.__config__ import show as show_config 302s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 302s from numpy.core._multiarray_umath import ( 302s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 302s raise ImportError(msg) 302s E ImportError: 302s E 302s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 302s E 302s E Importing the numpy C-extensions failed. This error can happen for 302s E many reasons, often due to issues with your setup or how NumPy was 302s E installed. 302s E 302s E We have compiled some common reasons and troubleshooting tips at: 302s E 302s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 302s E 302s E Please note and check the following: 302s E 302s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 302s E * The NumPy version is: "1.26.4" 302s E 302s E and make sure that they are the versions you expect. 302s E Please carefully study the documentation linked above for further help. 302s E 302s E Original error was: No module named 'numpy.core._multiarray_umath' 302s 302s The above exception was the direct cause of the following exception: 302s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 302s return _bootstrap._gcd_import(name[level:], package, level) 302s testsuite/MDAnalysisTests/__init__.py:125: in 302s from MDAnalysisTests.util import ( 302s testsuite/MDAnalysisTests/util.py:41: in 302s from numpy.testing import assert_warns 302s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 302s raise ImportError(msg) from e 302s E ImportError: Error importing numpy: you should not try to import numpy from 302s E its source directory; please exit the numpy source tree, and relaunch 302s E your python interpreter from there. 302s _______ ERROR collecting testsuite/MDAnalysisTests/analysis/test_rdf.py ________ 302s ImportError while importing test module '/tmp/autopkgtest.vhk5Bq/build.ka4/src/testsuite/MDAnalysisTests/analysis/test_rdf.py'. 302s Hint: make sure your test modules/packages have valid Python names. 302s Traceback: 302s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 302s from . import multiarray 302s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 302s from . import overrides 302s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 302s from numpy.core._multiarray_umath import ( 302s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 302s 302s During handling of the above exception, another exception occurred: 302s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 302s from numpy.__config__ import show as show_config 302s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 302s from numpy.core._multiarray_umath import ( 302s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 302s raise ImportError(msg) 302s E ImportError: 302s E 302s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 302s E 302s E Importing the numpy C-extensions failed. This error can happen for 302s E many reasons, often due to issues with your setup or how NumPy was 302s E installed. 302s E 302s E We have compiled some common reasons and troubleshooting tips at: 302s E 302s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 302s E 302s E Please note and check the following: 302s E 302s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 302s E * The NumPy version is: "1.26.4" 302s E 302s E and make sure that they are the versions you expect. 302s E Please carefully study the documentation linked above for further help. 302s E 302s E Original error was: No module named 'numpy.core._multiarray_umath' 302s 302s The above exception was the direct cause of the following exception: 302s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 302s return _bootstrap._gcd_import(name[level:], package, level) 302s testsuite/MDAnalysisTests/__init__.py:125: in 302s from MDAnalysisTests.util import ( 302s testsuite/MDAnalysisTests/util.py:41: in 302s from numpy.testing import assert_warns 302s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 302s raise ImportError(msg) from e 302s E ImportError: Error importing numpy: you should not try to import numpy from 302s E its source directory; please exit the numpy source tree, and relaunch 302s E your python interpreter from there. 302s ______ ERROR collecting testsuite/MDAnalysisTests/analysis/test_rdf_s.py _______ 302s ImportError while importing test module '/tmp/autopkgtest.vhk5Bq/build.ka4/src/testsuite/MDAnalysisTests/analysis/test_rdf_s.py'. 302s Hint: make sure your test modules/packages have valid Python names. 302s Traceback: 302s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 302s from . import multiarray 302s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 302s from . import overrides 302s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 302s from numpy.core._multiarray_umath import ( 302s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 302s 302s During handling of the above exception, another exception occurred: 302s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 302s from numpy.__config__ import show as show_config 302s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 302s from numpy.core._multiarray_umath import ( 302s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 302s raise ImportError(msg) 302s E ImportError: 302s E 302s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 302s E 302s E Importing the numpy C-extensions failed. This error can happen for 302s E many reasons, often due to issues with your setup or how NumPy was 302s E installed. 302s E 302s E We have compiled some common reasons and troubleshooting tips at: 302s E 302s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 302s E 302s E Please note and check the following: 302s E 302s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 302s E * The NumPy version is: "1.26.4" 302s E 302s E and make sure that they are the versions you expect. 302s E Please carefully study the documentation linked above for further help. 302s E 302s E Original error was: No module named 'numpy.core._multiarray_umath' 302s 302s The above exception was the direct cause of the following exception: 302s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 302s return _bootstrap._gcd_import(name[level:], package, level) 302s testsuite/MDAnalysisTests/__init__.py:125: in 302s from MDAnalysisTests.util import ( 302s testsuite/MDAnalysisTests/util.py:41: in 302s from numpy.testing import assert_warns 302s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 302s raise ImportError(msg) from e 302s E ImportError: Error importing numpy: you should not try to import numpy from 302s E its source directory; please exit the numpy source tree, and relaunch 302s E your python interpreter from there. 302s _______ ERROR collecting testsuite/MDAnalysisTests/analysis/test_rms.py ________ 302s ImportError while importing test module '/tmp/autopkgtest.vhk5Bq/build.ka4/src/testsuite/MDAnalysisTests/analysis/test_rms.py'. 302s Hint: make sure your test modules/packages have valid Python names. 302s Traceback: 302s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 302s from . import multiarray 302s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 302s from . import overrides 302s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 302s from numpy.core._multiarray_umath import ( 302s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 302s 302s During handling of the above exception, another exception occurred: 302s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 302s from numpy.__config__ import show as show_config 302s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 302s from numpy.core._multiarray_umath import ( 302s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 302s raise ImportError(msg) 302s E ImportError: 302s E 302s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 302s E 302s E Importing the numpy C-extensions failed. This error can happen for 302s E many reasons, often due to issues with your setup or how NumPy was 302s E installed. 302s E 302s E We have compiled some common reasons and troubleshooting tips at: 302s E 302s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 302s E 302s E Please note and check the following: 302s E 302s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 302s E * The NumPy version is: "1.26.4" 302s E 302s E and make sure that they are the versions you expect. 302s E Please carefully study the documentation linked above for further help. 302s E 302s E Original error was: No module named 'numpy.core._multiarray_umath' 302s 302s The above exception was the direct cause of the following exception: 302s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 302s return _bootstrap._gcd_import(name[level:], package, level) 302s testsuite/MDAnalysisTests/__init__.py:125: in 302s from MDAnalysisTests.util import ( 302s testsuite/MDAnalysisTests/util.py:41: in 302s from numpy.testing import assert_warns 302s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 302s raise ImportError(msg) from e 302s E ImportError: Error importing numpy: you should not try to import numpy from 302s E its source directory; please exit the numpy source tree, and relaunch 302s E your python interpreter from there. 302s __ ERROR collecting testsuite/MDAnalysisTests/analysis/test_waterdynamics.py ___ 302s ImportError while importing test module '/tmp/autopkgtest.vhk5Bq/build.ka4/src/testsuite/MDAnalysisTests/analysis/test_waterdynamics.py'. 302s Hint: make sure your test modules/packages have valid Python names. 302s Traceback: 302s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 302s from . import multiarray 302s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 302s from . import overrides 302s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 302s from numpy.core._multiarray_umath import ( 302s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 302s 302s During handling of the above exception, another exception occurred: 302s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 302s from numpy.__config__ import show as show_config 302s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 302s from numpy.core._multiarray_umath import ( 302s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 302s raise ImportError(msg) 302s E ImportError: 302s E 302s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 302s E 302s E Importing the numpy C-extensions failed. This error can happen for 302s E many reasons, often due to issues with your setup or how NumPy was 302s E installed. 302s E 302s E We have compiled some common reasons and troubleshooting tips at: 302s E 302s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 302s E 302s E Please note and check the following: 302s E 302s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 302s E * The NumPy version is: "1.26.4" 302s E 302s E and make sure that they are the versions you expect. 302s E Please carefully study the documentation linked above for further help. 302s E 302s E Original error was: No module named 'numpy.core._multiarray_umath' 302s 302s The above exception was the direct cause of the following exception: 302s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 302s return _bootstrap._gcd_import(name[level:], package, level) 302s testsuite/MDAnalysisTests/__init__.py:125: in 302s from MDAnalysisTests.util import ( 302s testsuite/MDAnalysisTests/util.py:41: in 302s from numpy.testing import assert_warns 302s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 302s raise ImportError(msg) from e 302s E ImportError: Error importing numpy: you should not try to import numpy from 302s E its source directory; please exit the numpy source tree, and relaunch 302s E your python interpreter from there. 302s _____ ERROR collecting testsuite/MDAnalysisTests/analysis/test_wbridge.py ______ 302s ImportError while importing test module '/tmp/autopkgtest.vhk5Bq/build.ka4/src/testsuite/MDAnalysisTests/analysis/test_wbridge.py'. 302s Hint: make sure your test modules/packages have valid Python names. 302s Traceback: 302s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 302s from . import multiarray 302s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 302s from . import overrides 302s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 302s from numpy.core._multiarray_umath import ( 302s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 302s 302s During handling of the above exception, another exception occurred: 302s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 302s from numpy.__config__ import show as show_config 302s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 302s from numpy.core._multiarray_umath import ( 302s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 302s raise ImportError(msg) 302s E ImportError: 302s E 302s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 302s E 302s E Importing the numpy C-extensions failed. This error can happen for 302s E many reasons, often due to issues with your setup or how NumPy was 302s E installed. 302s E 302s E We have compiled some common reasons and troubleshooting tips at: 302s E 302s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 302s E 302s E Please note and check the following: 302s E 302s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 302s E * The NumPy version is: "1.26.4" 302s E 302s E and make sure that they are the versions you expect. 302s E Please carefully study the documentation linked above for further help. 302s E 302s E Original error was: No module named 'numpy.core._multiarray_umath' 302s 302s The above exception was the direct cause of the following exception: 302s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 302s return _bootstrap._gcd_import(name[level:], package, level) 302s testsuite/MDAnalysisTests/__init__.py:125: in 302s from MDAnalysisTests.util import ( 302s testsuite/MDAnalysisTests/util.py:41: in 302s from numpy.testing import assert_warns 302s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 302s raise ImportError(msg) from e 302s E ImportError: Error importing numpy: you should not try to import numpy from 302s E its source directory; please exit the numpy source tree, and relaunch 302s E your python interpreter from there. 302s ______ ERROR collecting testsuite/MDAnalysisTests/auxiliary/test_core.py _______ 302s ImportError while importing test module '/tmp/autopkgtest.vhk5Bq/build.ka4/src/testsuite/MDAnalysisTests/auxiliary/test_core.py'. 302s Hint: make sure your test modules/packages have valid Python names. 302s Traceback: 302s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 302s from . import multiarray 302s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 302s from . import overrides 302s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 302s from numpy.core._multiarray_umath import ( 302s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 302s 302s During handling of the above exception, another exception occurred: 302s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 302s from numpy.__config__ import show as show_config 302s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 302s from numpy.core._multiarray_umath import ( 302s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 302s raise ImportError(msg) 302s E ImportError: 302s E 302s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 302s E 302s E Importing the numpy C-extensions failed. This error can happen for 302s E many reasons, often due to issues with your setup or how NumPy was 302s E installed. 302s E 302s E We have compiled some common reasons and troubleshooting tips at: 302s E 302s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 302s E 302s E Please note and check the following: 302s E 302s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 302s E * The NumPy version is: "1.26.4" 302s E 302s E and make sure that they are the versions you expect. 302s E Please carefully study the documentation linked above for further help. 302s E 302s E Original error was: No module named 'numpy.core._multiarray_umath' 302s 302s The above exception was the direct cause of the following exception: 302s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 302s return _bootstrap._gcd_import(name[level:], package, level) 302s testsuite/MDAnalysisTests/__init__.py:125: in 302s from MDAnalysisTests.util import ( 302s testsuite/MDAnalysisTests/util.py:41: in 302s from numpy.testing import assert_warns 302s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 302s raise ImportError(msg) from e 302s E ImportError: Error importing numpy: you should not try to import numpy from 302s E its source directory; please exit the numpy source tree, and relaunch 302s E your python interpreter from there. 302s _______ ERROR collecting testsuite/MDAnalysisTests/auxiliary/test_edr.py _______ 302s ImportError while importing test module '/tmp/autopkgtest.vhk5Bq/build.ka4/src/testsuite/MDAnalysisTests/auxiliary/test_edr.py'. 302s Hint: make sure your test modules/packages have valid Python names. 302s Traceback: 302s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 302s from . import multiarray 302s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 302s from . import overrides 302s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 302s from numpy.core._multiarray_umath import ( 302s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 302s 302s During handling of the above exception, another exception occurred: 302s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 302s from numpy.__config__ import show as show_config 302s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 302s from numpy.core._multiarray_umath import ( 302s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 302s raise ImportError(msg) 302s E ImportError: 302s E 302s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 302s E 302s E Importing the numpy C-extensions failed. This error can happen for 302s E many reasons, often due to issues with your setup or how NumPy was 302s E installed. 302s E 302s E We have compiled some common reasons and troubleshooting tips at: 302s E 302s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 302s E 302s E Please note and check the following: 302s E 302s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 302s E * The NumPy version is: "1.26.4" 302s E 302s E and make sure that they are the versions you expect. 302s E Please carefully study the documentation linked above for further help. 302s E 302s E Original error was: No module named 'numpy.core._multiarray_umath' 302s 302s The above exception was the direct cause of the following exception: 302s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 302s return _bootstrap._gcd_import(name[level:], package, level) 302s testsuite/MDAnalysisTests/__init__.py:125: in 302s from MDAnalysisTests.util import ( 302s testsuite/MDAnalysisTests/util.py:41: in 302s from numpy.testing import assert_warns 302s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 302s raise ImportError(msg) from e 302s E ImportError: Error importing numpy: you should not try to import numpy from 302s E its source directory; please exit the numpy source tree, and relaunch 302s E your python interpreter from there. 302s _______ ERROR collecting testsuite/MDAnalysisTests/auxiliary/test_xvg.py _______ 302s ImportError while importing test module '/tmp/autopkgtest.vhk5Bq/build.ka4/src/testsuite/MDAnalysisTests/auxiliary/test_xvg.py'. 302s Hint: make sure your test modules/packages have valid Python names. 302s Traceback: 302s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 302s from . import multiarray 302s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 302s from . import overrides 302s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 302s from numpy.core._multiarray_umath import ( 302s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 302s 302s During handling of the above exception, another exception occurred: 302s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 302s from numpy.__config__ import show as show_config 302s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 302s from numpy.core._multiarray_umath import ( 302s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 302s raise ImportError(msg) 302s E ImportError: 302s E 302s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 302s E 302s E Importing the numpy C-extensions failed. This error can happen for 302s E many reasons, often due to issues with your setup or how NumPy was 302s E installed. 302s E 302s E We have compiled some common reasons and troubleshooting tips at: 302s E 302s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 302s E 302s E Please note and check the following: 302s E 302s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 302s E * The NumPy version is: "1.26.4" 302s E 302s E and make sure that they are the versions you expect. 302s E Please carefully study the documentation linked above for further help. 302s E 302s E Original error was: No module named 'numpy.core._multiarray_umath' 302s 302s The above exception was the direct cause of the following exception: 302s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 302s return _bootstrap._gcd_import(name[level:], package, level) 302s testsuite/MDAnalysisTests/__init__.py:125: in 302s from MDAnalysisTests.util import ( 302s testsuite/MDAnalysisTests/util.py:41: in 302s from numpy.testing import assert_warns 302s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 302s raise ImportError(msg) from e 302s E ImportError: Error importing numpy: you should not try to import numpy from 302s E its source directory; please exit the numpy source tree, and relaunch 302s E your python interpreter from there. 302s ______ ERROR collecting testsuite/MDAnalysisTests/converters/test_base.py ______ 302s ImportError while importing test module '/tmp/autopkgtest.vhk5Bq/build.ka4/src/testsuite/MDAnalysisTests/converters/test_base.py'. 302s Hint: make sure your test modules/packages have valid Python names. 302s Traceback: 302s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 302s from . import multiarray 302s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 302s from . import overrides 302s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 302s from numpy.core._multiarray_umath import ( 302s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 302s 302s During handling of the above exception, another exception occurred: 302s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 302s from numpy.__config__ import show as show_config 302s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 302s from numpy.core._multiarray_umath import ( 302s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 302s raise ImportError(msg) 302s E ImportError: 302s E 302s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 302s E 302s E Importing the numpy C-extensions failed. This error can happen for 302s E many reasons, often due to issues with your setup or how NumPy was 302s E installed. 302s E 302s E We have compiled some common reasons and troubleshooting tips at: 302s E 302s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 302s E 302s E Please note and check the following: 302s E 302s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 302s E * The NumPy version is: "1.26.4" 302s E 302s E and make sure that they are the versions you expect. 302s E Please carefully study the documentation linked above for further help. 302s E 302s E Original error was: No module named 'numpy.core._multiarray_umath' 302s 302s The above exception was the direct cause of the following exception: 302s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 302s return _bootstrap._gcd_import(name[level:], package, level) 302s testsuite/MDAnalysisTests/__init__.py:125: in 302s from MDAnalysisTests.util import ( 302s testsuite/MDAnalysisTests/util.py:41: in 302s from numpy.testing import assert_warns 302s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 302s raise ImportError(msg) from e 302s E ImportError: Error importing numpy: you should not try to import numpy from 302s E its source directory; please exit the numpy source tree, and relaunch 302s E your python interpreter from there. 302s _____ ERROR collecting testsuite/MDAnalysisTests/converters/test_openmm.py _____ 302s ImportError while importing test module '/tmp/autopkgtest.vhk5Bq/build.ka4/src/testsuite/MDAnalysisTests/converters/test_openmm.py'. 302s Hint: make sure your test modules/packages have valid Python names. 302s Traceback: 302s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 302s from . import multiarray 302s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 302s from . import overrides 302s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 302s from numpy.core._multiarray_umath import ( 302s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 302s 302s During handling of the above exception, another exception occurred: 302s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 302s from numpy.__config__ import show as show_config 302s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 302s from numpy.core._multiarray_umath import ( 302s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 302s raise ImportError(msg) 302s E ImportError: 302s E 302s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 302s E 302s E Importing the numpy C-extensions failed. This error can happen for 302s E many reasons, often due to issues with your setup or how NumPy was 302s E installed. 302s E 302s E We have compiled some common reasons and troubleshooting tips at: 302s E 302s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 302s E 302s E Please note and check the following: 302s E 302s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 302s E * The NumPy version is: "1.26.4" 302s E 302s E and make sure that they are the versions you expect. 302s E Please carefully study the documentation linked above for further help. 302s E 302s E Original error was: No module named 'numpy.core._multiarray_umath' 302s 302s The above exception was the direct cause of the following exception: 302s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 302s return _bootstrap._gcd_import(name[level:], package, level) 302s testsuite/MDAnalysisTests/__init__.py:125: in 302s from MDAnalysisTests.util import ( 302s testsuite/MDAnalysisTests/util.py:41: in 302s from numpy.testing import assert_warns 302s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 302s raise ImportError(msg) from e 302s E ImportError: Error importing numpy: you should not try to import numpy from 302s E its source directory; please exit the numpy source tree, and relaunch 302s E your python interpreter from there. 302s _ ERROR collecting testsuite/MDAnalysisTests/converters/test_openmm_parser.py __ 302s ImportError while importing test module '/tmp/autopkgtest.vhk5Bq/build.ka4/src/testsuite/MDAnalysisTests/converters/test_openmm_parser.py'. 302s Hint: make sure your test modules/packages have valid Python names. 302s Traceback: 302s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 302s from . import multiarray 302s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 302s from . import overrides 302s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 302s from numpy.core._multiarray_umath import ( 302s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 302s 302s During handling of the above exception, another exception occurred: 302s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 302s from numpy.__config__ import show as show_config 302s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 302s from numpy.core._multiarray_umath import ( 302s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 302s raise ImportError(msg) 302s E ImportError: 302s E 302s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 302s E 302s E Importing the numpy C-extensions failed. This error can happen for 302s E many reasons, often due to issues with your setup or how NumPy was 302s E installed. 302s E 302s E We have compiled some common reasons and troubleshooting tips at: 302s E 302s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 302s E 302s E Please note and check the following: 302s E 302s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 302s E * The NumPy version is: "1.26.4" 302s E 302s E and make sure that they are the versions you expect. 302s E Please carefully study the documentation linked above for further help. 302s E 302s E Original error was: No module named 'numpy.core._multiarray_umath' 302s 302s The above exception was the direct cause of the following exception: 302s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 302s return _bootstrap._gcd_import(name[level:], package, level) 302s testsuite/MDAnalysisTests/__init__.py:125: in 302s from MDAnalysisTests.util import ( 302s testsuite/MDAnalysisTests/util.py:41: in 302s from numpy.testing import assert_warns 302s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 302s raise ImportError(msg) from e 302s E ImportError: Error importing numpy: you should not try to import numpy from 302s E its source directory; please exit the numpy source tree, and relaunch 302s E your python interpreter from there. 302s _____ ERROR collecting testsuite/MDAnalysisTests/converters/test_parmed.py _____ 302s ImportError while importing test module '/tmp/autopkgtest.vhk5Bq/build.ka4/src/testsuite/MDAnalysisTests/converters/test_parmed.py'. 302s Hint: make sure your test modules/packages have valid Python names. 302s Traceback: 302s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 302s from . import multiarray 302s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 302s from . import overrides 302s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 302s from numpy.core._multiarray_umath import ( 302s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 302s 302s During handling of the above exception, another exception occurred: 302s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 302s from numpy.__config__ import show as show_config 302s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 302s from numpy.core._multiarray_umath import ( 302s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 302s raise ImportError(msg) 302s E ImportError: 302s E 302s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 302s E 302s E Importing the numpy C-extensions failed. This error can happen for 302s E many reasons, often due to issues with your setup or how NumPy was 302s E installed. 302s E 302s E We have compiled some common reasons and troubleshooting tips at: 302s E 302s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 302s E 302s E Please note and check the following: 302s E 302s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 302s E * The NumPy version is: "1.26.4" 302s E 302s E and make sure that they are the versions you expect. 302s E Please carefully study the documentation linked above for further help. 302s E 302s E Original error was: No module named 'numpy.core._multiarray_umath' 302s 302s The above exception was the direct cause of the following exception: 302s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 302s return _bootstrap._gcd_import(name[level:], package, level) 302s testsuite/MDAnalysisTests/__init__.py:125: in 302s from MDAnalysisTests.util import ( 302s testsuite/MDAnalysisTests/util.py:41: in 302s from numpy.testing import assert_warns 302s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 302s raise ImportError(msg) from e 302s E ImportError: Error importing numpy: you should not try to import numpy from 302s E its source directory; please exit the numpy source tree, and relaunch 302s E your python interpreter from there. 302s _ ERROR collecting testsuite/MDAnalysisTests/converters/test_parmed_parser.py __ 302s ImportError while importing test module '/tmp/autopkgtest.vhk5Bq/build.ka4/src/testsuite/MDAnalysisTests/converters/test_parmed_parser.py'. 302s Hint: make sure your test modules/packages have valid Python names. 302s Traceback: 302s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 302s from . import multiarray 302s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 302s from . import overrides 302s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 302s from numpy.core._multiarray_umath import ( 302s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 302s 302s During handling of the above exception, another exception occurred: 302s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 302s from numpy.__config__ import show as show_config 302s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 302s from numpy.core._multiarray_umath import ( 302s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 302s raise ImportError(msg) 302s E ImportError: 302s E 302s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 302s E 302s E Importing the numpy C-extensions failed. This error can happen for 302s E many reasons, often due to issues with your setup or how NumPy was 302s E installed. 302s E 302s E We have compiled some common reasons and troubleshooting tips at: 302s E 302s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 302s E 302s E Please note and check the following: 302s E 302s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 302s E * The NumPy version is: "1.26.4" 302s E 302s E and make sure that they are the versions you expect. 302s E Please carefully study the documentation linked above for further help. 302s E 302s E Original error was: No module named 'numpy.core._multiarray_umath' 302s 302s The above exception was the direct cause of the following exception: 302s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 302s return _bootstrap._gcd_import(name[level:], package, level) 302s testsuite/MDAnalysisTests/__init__.py:125: in 302s from MDAnalysisTests.util import ( 302s testsuite/MDAnalysisTests/util.py:41: in 302s from numpy.testing import assert_warns 302s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 302s raise ImportError(msg) from e 302s E ImportError: Error importing numpy: you should not try to import numpy from 302s E its source directory; please exit the numpy source tree, and relaunch 302s E your python interpreter from there. 302s _____ ERROR collecting testsuite/MDAnalysisTests/converters/test_rdkit.py ______ 302s ImportError while importing test module '/tmp/autopkgtest.vhk5Bq/build.ka4/src/testsuite/MDAnalysisTests/converters/test_rdkit.py'. 302s Hint: make sure your test modules/packages have valid Python names. 302s Traceback: 302s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 302s from . import multiarray 302s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 302s from . import overrides 302s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 302s from numpy.core._multiarray_umath import ( 302s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 302s 302s During handling of the above exception, another exception occurred: 302s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 302s from numpy.__config__ import show as show_config 302s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 302s from numpy.core._multiarray_umath import ( 302s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 302s raise ImportError(msg) 302s E ImportError: 302s E 302s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 302s E 302s E Importing the numpy C-extensions failed. This error can happen for 302s E many reasons, often due to issues with your setup or how NumPy was 302s E installed. 302s E 302s E We have compiled some common reasons and troubleshooting tips at: 302s E 302s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 302s E 302s E Please note and check the following: 302s E 302s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 302s E * The NumPy version is: "1.26.4" 302s E 302s E and make sure that they are the versions you expect. 302s E Please carefully study the documentation linked above for further help. 302s E 302s E Original error was: No module named 'numpy.core._multiarray_umath' 302s 302s The above exception was the direct cause of the following exception: 302s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 302s return _bootstrap._gcd_import(name[level:], package, level) 302s testsuite/MDAnalysisTests/__init__.py:125: in 302s from MDAnalysisTests.util import ( 302s testsuite/MDAnalysisTests/util.py:41: in 302s from numpy.testing import assert_warns 302s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 302s raise ImportError(msg) from e 302s E ImportError: Error importing numpy: you should not try to import numpy from 302s E its source directory; please exit the numpy source tree, and relaunch 302s E your python interpreter from there. 302s __ ERROR collecting testsuite/MDAnalysisTests/converters/test_rdkit_parser.py __ 302s ImportError while importing test module '/tmp/autopkgtest.vhk5Bq/build.ka4/src/testsuite/MDAnalysisTests/converters/test_rdkit_parser.py'. 302s Hint: make sure your test modules/packages have valid Python names. 302s Traceback: 302s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 302s from . import multiarray 302s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 302s from . import overrides 302s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 302s from numpy.core._multiarray_umath import ( 302s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 302s 302s During handling of the above exception, another exception occurred: 302s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 302s from numpy.__config__ import show as show_config 302s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 302s from numpy.core._multiarray_umath import ( 302s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 302s raise ImportError(msg) 302s E ImportError: 302s E 302s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 302s E 302s E Importing the numpy C-extensions failed. This error can happen for 302s E many reasons, often due to issues with your setup or how NumPy was 302s E installed. 302s E 302s E We have compiled some common reasons and troubleshooting tips at: 302s E 302s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 302s E 302s E Please note and check the following: 302s E 302s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 302s E * The NumPy version is: "1.26.4" 302s E 302s E and make sure that they are the versions you expect. 302s E Please carefully study the documentation linked above for further help. 302s E 302s E Original error was: No module named 'numpy.core._multiarray_umath' 302s 302s The above exception was the direct cause of the following exception: 302s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 302s return _bootstrap._gcd_import(name[level:], package, level) 302s testsuite/MDAnalysisTests/__init__.py:125: in 302s from MDAnalysisTests.util import ( 302s testsuite/MDAnalysisTests/util.py:41: in 302s from numpy.testing import assert_warns 302s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 302s raise ImportError(msg) from e 302s E ImportError: Error importing numpy: you should not try to import numpy from 302s E its source directory; please exit the numpy source tree, and relaunch 302s E your python interpreter from there. 302s _ ERROR collecting testsuite/MDAnalysisTests/coordinates/test_amber_inpcrd.py __ 302s ImportError while importing test module '/tmp/autopkgtest.vhk5Bq/build.ka4/src/testsuite/MDAnalysisTests/coordinates/test_amber_inpcrd.py'. 302s Hint: make sure your test modules/packages have valid Python names. 302s Traceback: 302s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 302s from . import multiarray 302s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 302s from . import overrides 302s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 302s from numpy.core._multiarray_umath import ( 302s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 302s 302s During handling of the above exception, another exception occurred: 302s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 302s from numpy.__config__ import show as show_config 302s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 302s from numpy.core._multiarray_umath import ( 302s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 302s raise ImportError(msg) 302s E ImportError: 302s E 302s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 302s E 302s E Importing the numpy C-extensions failed. This error can happen for 302s E many reasons, often due to issues with your setup or how NumPy was 302s E installed. 302s E 302s E We have compiled some common reasons and troubleshooting tips at: 302s E 302s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 302s E 302s E Please note and check the following: 302s E 302s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 302s E * The NumPy version is: "1.26.4" 302s E 302s E and make sure that they are the versions you expect. 302s E Please carefully study the documentation linked above for further help. 302s E 302s E Original error was: No module named 'numpy.core._multiarray_umath' 302s 302s The above exception was the direct cause of the following exception: 302s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 302s return _bootstrap._gcd_import(name[level:], package, level) 302s testsuite/MDAnalysisTests/__init__.py:125: in 302s from MDAnalysisTests.util import ( 302s testsuite/MDAnalysisTests/util.py:41: in 302s from numpy.testing import assert_warns 302s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 302s raise ImportError(msg) from e 302s E ImportError: Error importing numpy: you should not try to import numpy from 302s E its source directory; please exit the numpy source tree, and relaunch 302s E your python interpreter from there. 302s __ ERROR collecting testsuite/MDAnalysisTests/coordinates/test_chainreader.py __ 302s ImportError while importing test module '/tmp/autopkgtest.vhk5Bq/build.ka4/src/testsuite/MDAnalysisTests/coordinates/test_chainreader.py'. 302s Hint: make sure your test modules/packages have valid Python names. 302s Traceback: 302s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 302s from . import multiarray 302s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 302s from . import overrides 302s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 302s from numpy.core._multiarray_umath import ( 302s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 302s 302s During handling of the above exception, another exception occurred: 302s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 302s from numpy.__config__ import show as show_config 302s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 302s from numpy.core._multiarray_umath import ( 302s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 302s raise ImportError(msg) 302s E ImportError: 302s E 302s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 302s E 302s E Importing the numpy C-extensions failed. This error can happen for 302s E many reasons, often due to issues with your setup or how NumPy was 302s E installed. 302s E 302s E We have compiled some common reasons and troubleshooting tips at: 302s E 302s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 302s E 302s E Please note and check the following: 302s E 302s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 302s E * The NumPy version is: "1.26.4" 302s E 302s E and make sure that they are the versions you expect. 302s E Please carefully study the documentation linked above for further help. 302s E 302s E Original error was: No module named 'numpy.core._multiarray_umath' 302s 302s The above exception was the direct cause of the following exception: 302s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 302s return _bootstrap._gcd_import(name[level:], package, level) 302s testsuite/MDAnalysisTests/__init__.py:125: in 302s from MDAnalysisTests.util import ( 302s testsuite/MDAnalysisTests/util.py:41: in 302s from numpy.testing import assert_warns 302s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 302s raise ImportError(msg) from e 302s E ImportError: Error importing numpy: you should not try to import numpy from 302s E its source directory; please exit the numpy source tree, and relaunch 302s E your python interpreter from there. 302s ___ ERROR collecting testsuite/MDAnalysisTests/coordinates/test_chemfiles.py ___ 302s ImportError while importing test module '/tmp/autopkgtest.vhk5Bq/build.ka4/src/testsuite/MDAnalysisTests/coordinates/test_chemfiles.py'. 302s Hint: make sure your test modules/packages have valid Python names. 302s Traceback: 302s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 302s from . import multiarray 302s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 302s from . import overrides 302s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 302s from numpy.core._multiarray_umath import ( 302s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 302s 302s During handling of the above exception, another exception occurred: 302s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 302s from numpy.__config__ import show as show_config 302s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 302s from numpy.core._multiarray_umath import ( 302s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 302s raise ImportError(msg) 302s E ImportError: 302s E 302s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 302s E 302s E Importing the numpy C-extensions failed. This error can happen for 302s E many reasons, often due to issues with your setup or how NumPy was 302s E installed. 302s E 302s E We have compiled some common reasons and troubleshooting tips at: 302s E 302s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 302s E 302s E Please note and check the following: 302s E 302s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 302s E * The NumPy version is: "1.26.4" 302s E 302s E and make sure that they are the versions you expect. 302s E Please carefully study the documentation linked above for further help. 302s E 302s E Original error was: No module named 'numpy.core._multiarray_umath' 302s 302s The above exception was the direct cause of the following exception: 302s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 302s return _bootstrap._gcd_import(name[level:], package, level) 302s testsuite/MDAnalysisTests/__init__.py:125: in 302s from MDAnalysisTests.util import ( 302s testsuite/MDAnalysisTests/util.py:41: in 302s from numpy.testing import assert_warns 302s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 302s raise ImportError(msg) from e 302s E ImportError: Error importing numpy: you should not try to import numpy from 302s E its source directory; please exit the numpy source tree, and relaunch 302s E your python interpreter from there. 302s ____ ERROR collecting testsuite/MDAnalysisTests/coordinates/test_copying.py ____ 302s ImportError while importing test module '/tmp/autopkgtest.vhk5Bq/build.ka4/src/testsuite/MDAnalysisTests/coordinates/test_copying.py'. 302s Hint: make sure your test modules/packages have valid Python names. 302s Traceback: 302s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 302s from . import multiarray 302s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 302s from . import overrides 302s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 302s from numpy.core._multiarray_umath import ( 302s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 302s 302s During handling of the above exception, another exception occurred: 302s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 302s from numpy.__config__ import show as show_config 302s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 302s from numpy.core._multiarray_umath import ( 302s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 302s raise ImportError(msg) 302s E ImportError: 302s E 302s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 302s E 302s E Importing the numpy C-extensions failed. This error can happen for 302s E many reasons, often due to issues with your setup or how NumPy was 302s E installed. 302s E 302s E We have compiled some common reasons and troubleshooting tips at: 302s E 302s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 302s E 302s E Please note and check the following: 302s E 302s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 302s E * The NumPy version is: "1.26.4" 302s E 302s E and make sure that they are the versions you expect. 302s E Please carefully study the documentation linked above for further help. 302s E 302s E Original error was: No module named 'numpy.core._multiarray_umath' 302s 302s The above exception was the direct cause of the following exception: 302s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 302s return _bootstrap._gcd_import(name[level:], package, level) 302s testsuite/MDAnalysisTests/__init__.py:125: in 302s from MDAnalysisTests.util import ( 302s testsuite/MDAnalysisTests/util.py:41: in 302s from numpy.testing import assert_warns 302s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 302s raise ImportError(msg) from e 302s E ImportError: Error importing numpy: you should not try to import numpy from 302s E its source directory; please exit the numpy source tree, and relaunch 302s E your python interpreter from there. 302s ______ ERROR collecting testsuite/MDAnalysisTests/coordinates/test_crd.py ______ 302s ImportError while importing test module '/tmp/autopkgtest.vhk5Bq/build.ka4/src/testsuite/MDAnalysisTests/coordinates/test_crd.py'. 302s Hint: make sure your test modules/packages have valid Python names. 302s Traceback: 302s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 302s from . import multiarray 302s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 302s from . import overrides 302s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 302s from numpy.core._multiarray_umath import ( 302s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 302s 302s During handling of the above exception, another exception occurred: 302s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 302s from numpy.__config__ import show as show_config 302s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 302s from numpy.core._multiarray_umath import ( 302s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 302s raise ImportError(msg) 302s E ImportError: 302s E 302s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 302s E 302s E Importing the numpy C-extensions failed. This error can happen for 302s E many reasons, often due to issues with your setup or how NumPy was 302s E installed. 302s E 302s E We have compiled some common reasons and troubleshooting tips at: 302s E 302s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 302s E 302s E Please note and check the following: 302s E 302s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 302s E * The NumPy version is: "1.26.4" 302s E 302s E and make sure that they are the versions you expect. 302s E Please carefully study the documentation linked above for further help. 302s E 302s E Original error was: No module named 'numpy.core._multiarray_umath' 302s 302s The above exception was the direct cause of the following exception: 302s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 302s return _bootstrap._gcd_import(name[level:], package, level) 302s testsuite/MDAnalysisTests/__init__.py:125: in 302s from MDAnalysisTests.util import ( 302s testsuite/MDAnalysisTests/util.py:41: in 302s from numpy.testing import assert_warns 302s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 302s raise ImportError(msg) from e 302s E ImportError: Error importing numpy: you should not try to import numpy from 302s E its source directory; please exit the numpy source tree, and relaunch 302s E your python interpreter from there. 302s ______ ERROR collecting testsuite/MDAnalysisTests/coordinates/test_dcd.py ______ 302s ImportError while importing test module '/tmp/autopkgtest.vhk5Bq/build.ka4/src/testsuite/MDAnalysisTests/coordinates/test_dcd.py'. 302s Hint: make sure your test modules/packages have valid Python names. 302s Traceback: 302s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 302s from . import multiarray 302s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 302s from . import overrides 302s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 302s from numpy.core._multiarray_umath import ( 302s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 302s 302s During handling of the above exception, another exception occurred: 302s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 302s from numpy.__config__ import show as show_config 302s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 302s from numpy.core._multiarray_umath import ( 302s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 302s raise ImportError(msg) 302s E ImportError: 302s E 302s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 302s E 302s E Importing the numpy C-extensions failed. This error can happen for 302s E many reasons, often due to issues with your setup or how NumPy was 302s E installed. 302s E 302s E We have compiled some common reasons and troubleshooting tips at: 302s E 302s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 302s E 302s E Please note and check the following: 302s E 302s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 302s E * The NumPy version is: "1.26.4" 302s E 302s E and make sure that they are the versions you expect. 302s E Please carefully study the documentation linked above for further help. 302s E 302s E Original error was: No module named 'numpy.core._multiarray_umath' 302s 302s The above exception was the direct cause of the following exception: 302s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 302s return _bootstrap._gcd_import(name[level:], package, level) 302s testsuite/MDAnalysisTests/__init__.py:125: in 302s from MDAnalysisTests.util import ( 302s testsuite/MDAnalysisTests/util.py:41: in 302s from numpy.testing import assert_warns 302s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 302s raise ImportError(msg) from e 302s E ImportError: Error importing numpy: you should not try to import numpy from 302s E its source directory; please exit the numpy source tree, and relaunch 302s E your python interpreter from there. 302s ____ ERROR collecting testsuite/MDAnalysisTests/coordinates/test_dlpoly.py _____ 302s ImportError while importing test module '/tmp/autopkgtest.vhk5Bq/build.ka4/src/testsuite/MDAnalysisTests/coordinates/test_dlpoly.py'. 302s Hint: make sure your test modules/packages have valid Python names. 302s Traceback: 302s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 302s from . import multiarray 302s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 302s from . import overrides 302s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 302s from numpy.core._multiarray_umath import ( 302s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 302s 302s During handling of the above exception, another exception occurred: 302s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 302s from numpy.__config__ import show as show_config 302s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 302s from numpy.core._multiarray_umath import ( 302s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 302s raise ImportError(msg) 302s E ImportError: 302s E 302s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 302s E 302s E Importing the numpy C-extensions failed. This error can happen for 302s E many reasons, often due to issues with your setup or how NumPy was 302s E installed. 302s E 302s E We have compiled some common reasons and troubleshooting tips at: 302s E 302s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 302s E 302s E Please note and check the following: 302s E 302s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 302s E * The NumPy version is: "1.26.4" 302s E 302s E and make sure that they are the versions you expect. 302s E Please carefully study the documentation linked above for further help. 302s E 302s E Original error was: No module named 'numpy.core._multiarray_umath' 302s 302s The above exception was the direct cause of the following exception: 302s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 302s return _bootstrap._gcd_import(name[level:], package, level) 302s testsuite/MDAnalysisTests/__init__.py:125: in 302s from MDAnalysisTests.util import ( 302s testsuite/MDAnalysisTests/util.py:41: in 302s from numpy.testing import assert_warns 302s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 302s raise ImportError(msg) from e 302s E ImportError: Error importing numpy: you should not try to import numpy from 302s E its source directory; please exit the numpy source tree, and relaunch 302s E your python interpreter from there. 302s ______ ERROR collecting testsuite/MDAnalysisTests/coordinates/test_dms.py ______ 302s ImportError while importing test module '/tmp/autopkgtest.vhk5Bq/build.ka4/src/testsuite/MDAnalysisTests/coordinates/test_dms.py'. 302s Hint: make sure your test modules/packages have valid Python names. 302s Traceback: 302s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 302s from . import multiarray 302s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 302s from . import overrides 302s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 302s from numpy.core._multiarray_umath import ( 302s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 302s 302s During handling of the above exception, another exception occurred: 302s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 302s from numpy.__config__ import show as show_config 302s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 302s from numpy.core._multiarray_umath import ( 302s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 302s raise ImportError(msg) 302s E ImportError: 302s E 302s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 302s E 302s E Importing the numpy C-extensions failed. This error can happen for 302s E many reasons, often due to issues with your setup or how NumPy was 302s E installed. 302s E 302s E We have compiled some common reasons and troubleshooting tips at: 302s E 302s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 302s E 302s E Please note and check the following: 302s E 302s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 302s E * The NumPy version is: "1.26.4" 302s E 302s E and make sure that they are the versions you expect. 302s E Please carefully study the documentation linked above for further help. 302s E 302s E Original error was: No module named 'numpy.core._multiarray_umath' 302s 302s The above exception was the direct cause of the following exception: 302s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 302s return _bootstrap._gcd_import(name[level:], package, level) 302s testsuite/MDAnalysisTests/__init__.py:125: in 302s from MDAnalysisTests.util import ( 302s testsuite/MDAnalysisTests/util.py:41: in 302s from numpy.testing import assert_warns 302s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 302s raise ImportError(msg) from e 302s E ImportError: Error importing numpy: you should not try to import numpy from 302s E its source directory; please exit the numpy source tree, and relaunch 302s E your python interpreter from there. 302s ____ ERROR collecting testsuite/MDAnalysisTests/coordinates/test_fhiaims.py ____ 302s ImportError while importing test module '/tmp/autopkgtest.vhk5Bq/build.ka4/src/testsuite/MDAnalysisTests/coordinates/test_fhiaims.py'. 302s Hint: make sure your test modules/packages have valid Python names. 302s Traceback: 302s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 302s from . import multiarray 302s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 302s from . import overrides 302s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 302s from numpy.core._multiarray_umath import ( 302s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 302s 302s During handling of the above exception, another exception occurred: 302s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 302s from numpy.__config__ import show as show_config 302s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 302s from numpy.core._multiarray_umath import ( 302s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 302s raise ImportError(msg) 302s E ImportError: 302s E 302s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 302s E 302s E Importing the numpy C-extensions failed. This error can happen for 302s E many reasons, often due to issues with your setup or how NumPy was 302s E installed. 302s E 302s E We have compiled some common reasons and troubleshooting tips at: 302s E 302s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 302s E 302s E Please note and check the following: 302s E 302s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 302s E * The NumPy version is: "1.26.4" 302s E 302s E and make sure that they are the versions you expect. 302s E Please carefully study the documentation linked above for further help. 302s E 302s E Original error was: No module named 'numpy.core._multiarray_umath' 302s 302s The above exception was the direct cause of the following exception: 302s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 302s return _bootstrap._gcd_import(name[level:], package, level) 302s testsuite/MDAnalysisTests/__init__.py:125: in 302s from MDAnalysisTests.util import ( 302s testsuite/MDAnalysisTests/util.py:41: in 302s from numpy.testing import assert_warns 302s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 302s raise ImportError(msg) from e 302s E ImportError: Error importing numpy: you should not try to import numpy from 302s E its source directory; please exit the numpy source tree, and relaunch 302s E your python interpreter from there. 302s ______ ERROR collecting testsuite/MDAnalysisTests/coordinates/test_gms.py ______ 302s ImportError while importing test module '/tmp/autopkgtest.vhk5Bq/build.ka4/src/testsuite/MDAnalysisTests/coordinates/test_gms.py'. 302s Hint: make sure your test modules/packages have valid Python names. 302s Traceback: 302s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 302s from . import multiarray 302s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 302s from . import overrides 302s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 302s from numpy.core._multiarray_umath import ( 302s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 302s 302s During handling of the above exception, another exception occurred: 302s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 302s from numpy.__config__ import show as show_config 302s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 302s from numpy.core._multiarray_umath import ( 302s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 302s raise ImportError(msg) 302s E ImportError: 302s E 302s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 302s E 302s E Importing the numpy C-extensions failed. This error can happen for 302s E many reasons, often due to issues with your setup or how NumPy was 302s E installed. 302s E 302s E We have compiled some common reasons and troubleshooting tips at: 302s E 302s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 302s E 302s E Please note and check the following: 302s E 302s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 302s E * The NumPy version is: "1.26.4" 302s E 302s E and make sure that they are the versions you expect. 302s E Please carefully study the documentation linked above for further help. 302s E 302s E Original error was: No module named 'numpy.core._multiarray_umath' 302s 302s The above exception was the direct cause of the following exception: 302s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 302s return _bootstrap._gcd_import(name[level:], package, level) 302s testsuite/MDAnalysisTests/__init__.py:125: in 302s from MDAnalysisTests.util import ( 302s testsuite/MDAnalysisTests/util.py:41: in 302s from numpy.testing import assert_warns 302s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 302s raise ImportError(msg) from e 302s E ImportError: Error importing numpy: you should not try to import numpy from 302s E its source directory; please exit the numpy source tree, and relaunch 302s E your python interpreter from there. 302s ______ ERROR collecting testsuite/MDAnalysisTests/coordinates/test_gro.py ______ 302s ImportError while importing test module '/tmp/autopkgtest.vhk5Bq/build.ka4/src/testsuite/MDAnalysisTests/coordinates/test_gro.py'. 302s Hint: make sure your test modules/packages have valid Python names. 302s Traceback: 302s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 302s from . import multiarray 302s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 302s from . import overrides 302s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 302s from numpy.core._multiarray_umath import ( 302s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 302s 302s During handling of the above exception, another exception occurred: 302s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 302s from numpy.__config__ import show as show_config 302s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 302s from numpy.core._multiarray_umath import ( 302s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 302s raise ImportError(msg) 302s E ImportError: 302s E 302s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 302s E 302s E Importing the numpy C-extensions failed. This error can happen for 302s E many reasons, often due to issues with your setup or how NumPy was 302s E installed. 302s E 302s E We have compiled some common reasons and troubleshooting tips at: 302s E 302s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 302s E 302s E Please note and check the following: 302s E 302s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 302s E * The NumPy version is: "1.26.4" 302s E 302s E and make sure that they are the versions you expect. 302s E Please carefully study the documentation linked above for further help. 302s E 302s E Original error was: No module named 'numpy.core._multiarray_umath' 302s 302s The above exception was the direct cause of the following exception: 302s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 302s return _bootstrap._gcd_import(name[level:], package, level) 302s testsuite/MDAnalysisTests/__init__.py:125: in 302s from MDAnalysisTests.util import ( 302s testsuite/MDAnalysisTests/util.py:41: in 302s from numpy.testing import assert_warns 302s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 302s raise ImportError(msg) from e 302s E ImportError: Error importing numpy: you should not try to import numpy from 302s E its source directory; please exit the numpy source tree, and relaunch 302s E your python interpreter from there. 302s ______ ERROR collecting testsuite/MDAnalysisTests/coordinates/test_gsd.py ______ 302s ImportError while importing test module '/tmp/autopkgtest.vhk5Bq/build.ka4/src/testsuite/MDAnalysisTests/coordinates/test_gsd.py'. 302s Hint: make sure your test modules/packages have valid Python names. 302s Traceback: 302s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 302s from . import multiarray 302s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 302s from . import overrides 302s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 302s from numpy.core._multiarray_umath import ( 302s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 302s 302s During handling of the above exception, another exception occurred: 302s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 302s from numpy.__config__ import show as show_config 302s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 302s from numpy.core._multiarray_umath import ( 302s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 302s raise ImportError(msg) 302s E ImportError: 302s E 302s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 302s E 302s E Importing the numpy C-extensions failed. This error can happen for 302s E many reasons, often due to issues with your setup or how NumPy was 302s E installed. 302s E 302s E We have compiled some common reasons and troubleshooting tips at: 302s E 302s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 302s E 302s E Please note and check the following: 302s E 302s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 302s E * The NumPy version is: "1.26.4" 302s E 302s E and make sure that they are the versions you expect. 302s E Please carefully study the documentation linked above for further help. 302s E 302s E Original error was: No module named 'numpy.core._multiarray_umath' 302s 302s The above exception was the direct cause of the following exception: 302s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 302s return _bootstrap._gcd_import(name[level:], package, level) 302s testsuite/MDAnalysisTests/__init__.py:125: in 302s from MDAnalysisTests.util import ( 302s testsuite/MDAnalysisTests/util.py:41: in 302s from numpy.testing import assert_warns 302s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 302s raise ImportError(msg) from e 302s E ImportError: Error importing numpy: you should not try to import numpy from 302s E its source directory; please exit the numpy source tree, and relaunch 302s E your python interpreter from there. 302s _____ ERROR collecting testsuite/MDAnalysisTests/coordinates/test_h5md.py ______ 302s ImportError while importing test module '/tmp/autopkgtest.vhk5Bq/build.ka4/src/testsuite/MDAnalysisTests/coordinates/test_h5md.py'. 302s Hint: make sure your test modules/packages have valid Python names. 302s Traceback: 302s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 302s from . import multiarray 302s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 302s from . import overrides 302s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 302s from numpy.core._multiarray_umath import ( 302s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 302s 302s During handling of the above exception, another exception occurred: 302s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 302s from numpy.__config__ import show as show_config 302s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 302s from numpy.core._multiarray_umath import ( 302s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 302s raise ImportError(msg) 302s E ImportError: 302s E 302s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 302s E 302s E Importing the numpy C-extensions failed. This error can happen for 302s E many reasons, often due to issues with your setup or how NumPy was 302s E installed. 302s E 302s E We have compiled some common reasons and troubleshooting tips at: 302s E 302s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 302s E 302s E Please note and check the following: 302s E 302s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 302s E * The NumPy version is: "1.26.4" 302s E 302s E and make sure that they are the versions you expect. 302s E Please carefully study the documentation linked above for further help. 302s E 302s E Original error was: No module named 'numpy.core._multiarray_umath' 302s 302s The above exception was the direct cause of the following exception: 302s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 302s return _bootstrap._gcd_import(name[level:], package, level) 302s testsuite/MDAnalysisTests/__init__.py:125: in 302s from MDAnalysisTests.util import ( 302s testsuite/MDAnalysisTests/util.py:41: in 302s from numpy.testing import assert_warns 302s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 302s raise ImportError(msg) from e 302s E ImportError: Error importing numpy: you should not try to import numpy from 302s E its source directory; please exit the numpy source tree, and relaunch 302s E your python interpreter from there. 302s ____ ERROR collecting testsuite/MDAnalysisTests/coordinates/test_lammps.py _____ 302s ImportError while importing test module '/tmp/autopkgtest.vhk5Bq/build.ka4/src/testsuite/MDAnalysisTests/coordinates/test_lammps.py'. 302s Hint: make sure your test modules/packages have valid Python names. 302s Traceback: 302s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 302s from . import multiarray 302s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 302s from . import overrides 302s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 302s from numpy.core._multiarray_umath import ( 302s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 302s 302s During handling of the above exception, another exception occurred: 302s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 302s from numpy.__config__ import show as show_config 302s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 302s from numpy.core._multiarray_umath import ( 302s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 302s raise ImportError(msg) 302s E ImportError: 302s E 302s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 302s E 302s E Importing the numpy C-extensions failed. This error can happen for 302s E many reasons, often due to issues with your setup or how NumPy was 302s E installed. 302s E 302s E We have compiled some common reasons and troubleshooting tips at: 302s E 302s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 302s E 302s E Please note and check the following: 302s E 302s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 302s E * The NumPy version is: "1.26.4" 302s E 302s E and make sure that they are the versions you expect. 302s E Please carefully study the documentation linked above for further help. 302s E 302s E Original error was: No module named 'numpy.core._multiarray_umath' 302s 302s The above exception was the direct cause of the following exception: 302s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 302s return _bootstrap._gcd_import(name[level:], package, level) 302s testsuite/MDAnalysisTests/__init__.py:125: in 302s from MDAnalysisTests.util import ( 302s testsuite/MDAnalysisTests/util.py:41: in 302s from numpy.testing import assert_warns 302s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 302s raise ImportError(msg) from e 302s E ImportError: Error importing numpy: you should not try to import numpy from 302s E its source directory; please exit the numpy source tree, and relaunch 302s E your python interpreter from there. 302s ____ ERROR collecting testsuite/MDAnalysisTests/coordinates/test_memory.py _____ 302s ImportError while importing test module '/tmp/autopkgtest.vhk5Bq/build.ka4/src/testsuite/MDAnalysisTests/coordinates/test_memory.py'. 302s Hint: make sure your test modules/packages have valid Python names. 302s Traceback: 302s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 302s from . import multiarray 302s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 302s from . import overrides 302s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 302s from numpy.core._multiarray_umath import ( 302s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 302s 302s During handling of the above exception, another exception occurred: 302s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 302s from numpy.__config__ import show as show_config 302s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 302s from numpy.core._multiarray_umath import ( 302s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 302s raise ImportError(msg) 302s E ImportError: 302s E 302s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 302s E 302s E Importing the numpy C-extensions failed. This error can happen for 302s E many reasons, often due to issues with your setup or how NumPy was 302s E installed. 302s E 302s E We have compiled some common reasons and troubleshooting tips at: 302s E 302s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 302s E 302s E Please note and check the following: 302s E 302s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 302s E * The NumPy version is: "1.26.4" 302s E 302s E and make sure that they are the versions you expect. 302s E Please carefully study the documentation linked above for further help. 302s E 302s E Original error was: No module named 'numpy.core._multiarray_umath' 302s 302s The above exception was the direct cause of the following exception: 302s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 302s return _bootstrap._gcd_import(name[level:], package, level) 302s testsuite/MDAnalysisTests/__init__.py:125: in 302s from MDAnalysisTests.util import ( 302s testsuite/MDAnalysisTests/util.py:41: in 302s from numpy.testing import assert_warns 302s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 302s raise ImportError(msg) from e 302s E ImportError: Error importing numpy: you should not try to import numpy from 302s E its source directory; please exit the numpy source tree, and relaunch 302s E your python interpreter from there. 302s _____ ERROR collecting testsuite/MDAnalysisTests/coordinates/test_mmtf.py ______ 302s ImportError while importing test module '/tmp/autopkgtest.vhk5Bq/build.ka4/src/testsuite/MDAnalysisTests/coordinates/test_mmtf.py'. 302s Hint: make sure your test modules/packages have valid Python names. 302s Traceback: 302s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 302s from . import multiarray 302s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 302s from . import overrides 302s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 302s from numpy.core._multiarray_umath import ( 302s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 302s 302s During handling of the above exception, another exception occurred: 302s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 302s from numpy.__config__ import show as show_config 302s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 302s from numpy.core._multiarray_umath import ( 302s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 302s raise ImportError(msg) 302s E ImportError: 302s E 302s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 302s E 302s E Importing the numpy C-extensions failed. This error can happen for 302s E many reasons, often due to issues with your setup or how NumPy was 302s E installed. 302s E 302s E We have compiled some common reasons and troubleshooting tips at: 302s E 302s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 302s E 302s E Please note and check the following: 302s E 302s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 302s E * The NumPy version is: "1.26.4" 302s E 302s E and make sure that they are the versions you expect. 302s E Please carefully study the documentation linked above for further help. 302s E 302s E Original error was: No module named 'numpy.core._multiarray_umath' 302s 302s The above exception was the direct cause of the following exception: 302s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 302s return _bootstrap._gcd_import(name[level:], package, level) 302s testsuite/MDAnalysisTests/__init__.py:125: in 302s from MDAnalysisTests.util import ( 302s testsuite/MDAnalysisTests/util.py:41: in 302s from numpy.testing import assert_warns 302s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 302s raise ImportError(msg) from e 302s E ImportError: Error importing numpy: you should not try to import numpy from 302s E its source directory; please exit the numpy source tree, and relaunch 302s E your python interpreter from there. 302s _____ ERROR collecting testsuite/MDAnalysisTests/coordinates/test_mol2.py ______ 302s ImportError while importing test module '/tmp/autopkgtest.vhk5Bq/build.ka4/src/testsuite/MDAnalysisTests/coordinates/test_mol2.py'. 302s Hint: make sure your test modules/packages have valid Python names. 302s Traceback: 302s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 302s from . import multiarray 302s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 302s from . import overrides 302s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 302s from numpy.core._multiarray_umath import ( 302s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 302s 302s During handling of the above exception, another exception occurred: 302s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 302s from numpy.__config__ import show as show_config 302s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 302s from numpy.core._multiarray_umath import ( 302s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 302s raise ImportError(msg) 302s E ImportError: 302s E 302s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 302s E 302s E Importing the numpy C-extensions failed. This error can happen for 302s E many reasons, often due to issues with your setup or how NumPy was 302s E installed. 302s E 302s E We have compiled some common reasons and troubleshooting tips at: 302s E 302s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 302s E 302s E Please note and check the following: 302s E 302s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 302s E * The NumPy version is: "1.26.4" 302s E 302s E and make sure that they are the versions you expect. 302s E Please carefully study the documentation linked above for further help. 302s E 302s E Original error was: No module named 'numpy.core._multiarray_umath' 302s 302s The above exception was the direct cause of the following exception: 302s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 302s return _bootstrap._gcd_import(name[level:], package, level) 302s testsuite/MDAnalysisTests/__init__.py:125: in 302s from MDAnalysisTests.util import ( 302s testsuite/MDAnalysisTests/util.py:41: in 302s from numpy.testing import assert_warns 302s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 302s raise ImportError(msg) from e 302s E ImportError: Error importing numpy: you should not try to import numpy from 302s E its source directory; please exit the numpy source tree, and relaunch 302s E your python interpreter from there. 302s ____ ERROR collecting testsuite/MDAnalysisTests/coordinates/test_namdbin.py ____ 302s ImportError while importing test module '/tmp/autopkgtest.vhk5Bq/build.ka4/src/testsuite/MDAnalysisTests/coordinates/test_namdbin.py'. 302s Hint: make sure your test modules/packages have valid Python names. 302s Traceback: 302s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 302s from . import multiarray 302s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 302s from . import overrides 302s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 302s from numpy.core._multiarray_umath import ( 302s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 302s 302s During handling of the above exception, another exception occurred: 302s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 302s from numpy.__config__ import show as show_config 302s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 302s from numpy.core._multiarray_umath import ( 302s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 302s raise ImportError(msg) 302s E ImportError: 302s E 302s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 302s E 302s E Importing the numpy C-extensions failed. This error can happen for 302s E many reasons, often due to issues with your setup or how NumPy was 302s E installed. 302s E 302s E We have compiled some common reasons and troubleshooting tips at: 302s E 302s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 302s E 302s E Please note and check the following: 302s E 302s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 302s E * The NumPy version is: "1.26.4" 302s E 302s E and make sure that they are the versions you expect. 302s E Please carefully study the documentation linked above for further help. 302s E 302s E Original error was: No module named 'numpy.core._multiarray_umath' 302s 302s The above exception was the direct cause of the following exception: 302s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 302s return _bootstrap._gcd_import(name[level:], package, level) 302s testsuite/MDAnalysisTests/__init__.py:125: in 302s from MDAnalysisTests.util import ( 302s testsuite/MDAnalysisTests/util.py:41: in 302s from numpy.testing import assert_warns 302s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 302s raise ImportError(msg) from e 302s E ImportError: Error importing numpy: you should not try to import numpy from 302s E its source directory; please exit the numpy source tree, and relaunch 302s E your python interpreter from there. 302s ____ ERROR collecting testsuite/MDAnalysisTests/coordinates/test_netcdf.py _____ 302s ImportError while importing test module '/tmp/autopkgtest.vhk5Bq/build.ka4/src/testsuite/MDAnalysisTests/coordinates/test_netcdf.py'. 302s Hint: make sure your test modules/packages have valid Python names. 302s Traceback: 302s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 302s from . import multiarray 302s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 302s from . import overrides 302s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 302s from numpy.core._multiarray_umath import ( 302s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 302s 302s During handling of the above exception, another exception occurred: 302s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 302s from numpy.__config__ import show as show_config 302s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 302s from numpy.core._multiarray_umath import ( 302s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 302s raise ImportError(msg) 302s E ImportError: 302s E 302s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 302s E 302s E Importing the numpy C-extensions failed. This error can happen for 302s E many reasons, often due to issues with your setup or how NumPy was 302s E installed. 302s E 302s E We have compiled some common reasons and troubleshooting tips at: 302s E 302s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 302s E 302s E Please note and check the following: 302s E 302s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 302s E * The NumPy version is: "1.26.4" 302s E 302s E and make sure that they are the versions you expect. 302s E Please carefully study the documentation linked above for further help. 302s E 302s E Original error was: No module named 'numpy.core._multiarray_umath' 302s 302s The above exception was the direct cause of the following exception: 302s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 302s return _bootstrap._gcd_import(name[level:], package, level) 302s testsuite/MDAnalysisTests/__init__.py:125: in 302s from MDAnalysisTests.util import ( 302s testsuite/MDAnalysisTests/util.py:41: in 302s from numpy.testing import assert_warns 302s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 302s raise ImportError(msg) from e 302s E ImportError: Error importing numpy: you should not try to import numpy from 302s E its source directory; please exit the numpy source tree, and relaunch 302s E your python interpreter from there. 302s _____ ERROR collecting testsuite/MDAnalysisTests/coordinates/test_null.py ______ 302s ImportError while importing test module '/tmp/autopkgtest.vhk5Bq/build.ka4/src/testsuite/MDAnalysisTests/coordinates/test_null.py'. 302s Hint: make sure your test modules/packages have valid Python names. 302s Traceback: 302s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 302s from . import multiarray 302s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 302s from . import overrides 302s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 302s from numpy.core._multiarray_umath import ( 302s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 302s 302s During handling of the above exception, another exception occurred: 302s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 302s from numpy.__config__ import show as show_config 302s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 302s from numpy.core._multiarray_umath import ( 302s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 302s raise ImportError(msg) 302s E ImportError: 302s E 302s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 302s E 302s E Importing the numpy C-extensions failed. This error can happen for 302s E many reasons, often due to issues with your setup or how NumPy was 302s E installed. 302s E 302s E We have compiled some common reasons and troubleshooting tips at: 302s E 302s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 302s E 302s E Please note and check the following: 302s E 302s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 302s E * The NumPy version is: "1.26.4" 302s E 302s E and make sure that they are the versions you expect. 302s E Please carefully study the documentation linked above for further help. 302s E 302s E Original error was: No module named 'numpy.core._multiarray_umath' 302s 302s The above exception was the direct cause of the following exception: 302s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 302s return _bootstrap._gcd_import(name[level:], package, level) 302s testsuite/MDAnalysisTests/__init__.py:125: in 302s from MDAnalysisTests.util import ( 302s testsuite/MDAnalysisTests/util.py:41: in 302s from numpy.testing import assert_warns 302s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 302s raise ImportError(msg) from e 302s E ImportError: Error importing numpy: you should not try to import numpy from 302s E its source directory; please exit the numpy source tree, and relaunch 302s E your python interpreter from there. 302s ______ ERROR collecting testsuite/MDAnalysisTests/coordinates/test_pdb.py ______ 302s ImportError while importing test module '/tmp/autopkgtest.vhk5Bq/build.ka4/src/testsuite/MDAnalysisTests/coordinates/test_pdb.py'. 302s Hint: make sure your test modules/packages have valid Python names. 302s Traceback: 302s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 302s from . import multiarray 302s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 302s from . import overrides 302s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 302s from numpy.core._multiarray_umath import ( 302s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 302s 302s During handling of the above exception, another exception occurred: 302s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 302s from numpy.__config__ import show as show_config 302s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 302s from numpy.core._multiarray_umath import ( 302s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 302s raise ImportError(msg) 302s E ImportError: 302s E 302s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 302s E 302s E Importing the numpy C-extensions failed. This error can happen for 302s E many reasons, often due to issues with your setup or how NumPy was 302s E installed. 302s E 302s E We have compiled some common reasons and troubleshooting tips at: 302s E 302s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 302s E 302s E Please note and check the following: 302s E 302s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 302s E * The NumPy version is: "1.26.4" 302s E 302s E and make sure that they are the versions you expect. 302s E Please carefully study the documentation linked above for further help. 302s E 302s E Original error was: No module named 'numpy.core._multiarray_umath' 302s 302s The above exception was the direct cause of the following exception: 302s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 302s return _bootstrap._gcd_import(name[level:], package, level) 302s testsuite/MDAnalysisTests/__init__.py:125: in 302s from MDAnalysisTests.util import ( 302s testsuite/MDAnalysisTests/util.py:41: in 302s from numpy.testing import assert_warns 302s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 302s raise ImportError(msg) from e 302s E ImportError: Error importing numpy: you should not try to import numpy from 302s E its source directory; please exit the numpy source tree, and relaunch 302s E your python interpreter from there. 302s _____ ERROR collecting testsuite/MDAnalysisTests/coordinates/test_pdbqt.py _____ 302s ImportError while importing test module '/tmp/autopkgtest.vhk5Bq/build.ka4/src/testsuite/MDAnalysisTests/coordinates/test_pdbqt.py'. 302s Hint: make sure your test modules/packages have valid Python names. 302s Traceback: 302s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 302s from . import multiarray 302s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 302s from . import overrides 302s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 302s from numpy.core._multiarray_umath import ( 302s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 302s 302s During handling of the above exception, another exception occurred: 302s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 302s from numpy.__config__ import show as show_config 302s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 302s from numpy.core._multiarray_umath import ( 302s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 302s raise ImportError(msg) 302s E ImportError: 302s E 302s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 302s E 302s E Importing the numpy C-extensions failed. This error can happen for 302s E many reasons, often due to issues with your setup or how NumPy was 302s E installed. 302s E 302s E We have compiled some common reasons and troubleshooting tips at: 302s E 302s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 302s E 302s E Please note and check the following: 302s E 302s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 302s E * The NumPy version is: "1.26.4" 302s E 302s E and make sure that they are the versions you expect. 302s E Please carefully study the documentation linked above for further help. 302s E 302s E Original error was: No module named 'numpy.core._multiarray_umath' 302s 302s The above exception was the direct cause of the following exception: 302s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 302s return _bootstrap._gcd_import(name[level:], package, level) 302s testsuite/MDAnalysisTests/__init__.py:125: in 302s from MDAnalysisTests.util import ( 302s testsuite/MDAnalysisTests/util.py:41: in 302s from numpy.testing import assert_warns 302s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 302s raise ImportError(msg) from e 302s E ImportError: Error importing numpy: you should not try to import numpy from 302s E its source directory; please exit the numpy source tree, and relaunch 302s E your python interpreter from there. 302s ______ ERROR collecting testsuite/MDAnalysisTests/coordinates/test_pqr.py ______ 302s ImportError while importing test module '/tmp/autopkgtest.vhk5Bq/build.ka4/src/testsuite/MDAnalysisTests/coordinates/test_pqr.py'. 302s Hint: make sure your test modules/packages have valid Python names. 302s Traceback: 302s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 302s from . import multiarray 302s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 302s from . import overrides 302s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 302s from numpy.core._multiarray_umath import ( 302s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 302s 302s During handling of the above exception, another exception occurred: 302s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 302s from numpy.__config__ import show as show_config 302s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 302s from numpy.core._multiarray_umath import ( 302s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 302s raise ImportError(msg) 302s E ImportError: 302s E 302s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 302s E 302s E Importing the numpy C-extensions failed. This error can happen for 302s E many reasons, often due to issues with your setup or how NumPy was 302s E installed. 302s E 302s E We have compiled some common reasons and troubleshooting tips at: 302s E 302s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 302s E 302s E Please note and check the following: 302s E 302s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 302s E * The NumPy version is: "1.26.4" 302s E 302s E and make sure that they are the versions you expect. 302s E Please carefully study the documentation linked above for further help. 302s E 302s E Original error was: No module named 'numpy.core._multiarray_umath' 302s 302s The above exception was the direct cause of the following exception: 302s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 302s return _bootstrap._gcd_import(name[level:], package, level) 302s testsuite/MDAnalysisTests/__init__.py:125: in 302s from MDAnalysisTests.util import ( 302s testsuite/MDAnalysisTests/util.py:41: in 302s from numpy.testing import assert_warns 302s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 302s raise ImportError(msg) from e 302s E ImportError: Error importing numpy: you should not try to import numpy from 302s E its source directory; please exit the numpy source tree, and relaunch 302s E your python interpreter from there. 302s __ ERROR collecting testsuite/MDAnalysisTests/coordinates/test_reader_api.py ___ 302s ImportError while importing test module '/tmp/autopkgtest.vhk5Bq/build.ka4/src/testsuite/MDAnalysisTests/coordinates/test_reader_api.py'. 302s Hint: make sure your test modules/packages have valid Python names. 302s Traceback: 302s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 302s from . import multiarray 302s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 302s from . import overrides 302s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 302s from numpy.core._multiarray_umath import ( 302s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 302s 302s During handling of the above exception, another exception occurred: 302s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 302s from numpy.__config__ import show as show_config 302s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 302s from numpy.core._multiarray_umath import ( 302s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 302s raise ImportError(msg) 302s E ImportError: 302s E 302s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 302s E 302s E Importing the numpy C-extensions failed. This error can happen for 302s E many reasons, often due to issues with your setup or how NumPy was 302s E installed. 302s E 302s E We have compiled some common reasons and troubleshooting tips at: 302s E 302s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 302s E 302s E Please note and check the following: 302s E 302s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 302s E * The NumPy version is: "1.26.4" 302s E 302s E and make sure that they are the versions you expect. 302s E Please carefully study the documentation linked above for further help. 302s E 302s E Original error was: No module named 'numpy.core._multiarray_umath' 302s 302s The above exception was the direct cause of the following exception: 302s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 302s return _bootstrap._gcd_import(name[level:], package, level) 302s testsuite/MDAnalysisTests/__init__.py:125: in 302s from MDAnalysisTests.util import ( 302s testsuite/MDAnalysisTests/util.py:41: in 302s from numpy.testing import assert_warns 302s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 302s raise ImportError(msg) from e 302s E ImportError: Error importing numpy: you should not try to import numpy from 302s E its source directory; please exit the numpy source tree, and relaunch 302s E your python interpreter from there. 302s _ ERROR collecting testsuite/MDAnalysisTests/coordinates/test_timestep_api.py __ 302s ImportError while importing test module '/tmp/autopkgtest.vhk5Bq/build.ka4/src/testsuite/MDAnalysisTests/coordinates/test_timestep_api.py'. 302s Hint: make sure your test modules/packages have valid Python names. 302s Traceback: 302s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 302s from . import multiarray 302s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 302s from . import overrides 302s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 302s from numpy.core._multiarray_umath import ( 302s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 302s 302s During handling of the above exception, another exception occurred: 302s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 302s from numpy.__config__ import show as show_config 302s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 302s from numpy.core._multiarray_umath import ( 302s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 302s raise ImportError(msg) 302s E ImportError: 302s E 302s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 302s E 302s E Importing the numpy C-extensions failed. This error can happen for 302s E many reasons, often due to issues with your setup or how NumPy was 302s E installed. 302s E 302s E We have compiled some common reasons and troubleshooting tips at: 302s E 302s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 302s E 302s E Please note and check the following: 302s E 302s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 302s E * The NumPy version is: "1.26.4" 302s E 302s E and make sure that they are the versions you expect. 302s E Please carefully study the documentation linked above for further help. 302s E 302s E Original error was: No module named 'numpy.core._multiarray_umath' 302s 302s The above exception was the direct cause of the following exception: 302s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 302s return _bootstrap._gcd_import(name[level:], package, level) 302s testsuite/MDAnalysisTests/__init__.py:125: in 302s from MDAnalysisTests.util import ( 302s testsuite/MDAnalysisTests/util.py:41: in 302s from numpy.testing import assert_warns 302s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 302s raise ImportError(msg) from e 302s E ImportError: Error importing numpy: you should not try to import numpy from 302s E its source directory; please exit the numpy source tree, and relaunch 302s E your python interpreter from there. 302s ______ ERROR collecting testsuite/MDAnalysisTests/coordinates/test_tng.py ______ 302s ImportError while importing test module '/tmp/autopkgtest.vhk5Bq/build.ka4/src/testsuite/MDAnalysisTests/coordinates/test_tng.py'. 302s Hint: make sure your test modules/packages have valid Python names. 302s Traceback: 302s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 302s from . import multiarray 302s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 302s from . import overrides 302s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 302s from numpy.core._multiarray_umath import ( 302s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 302s 302s During handling of the above exception, another exception occurred: 302s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 302s from numpy.__config__ import show as show_config 302s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 302s from numpy.core._multiarray_umath import ( 302s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 302s raise ImportError(msg) 302s E ImportError: 302s E 302s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 302s E 302s E Importing the numpy C-extensions failed. This error can happen for 302s E many reasons, often due to issues with your setup or how NumPy was 302s E installed. 302s E 302s E We have compiled some common reasons and troubleshooting tips at: 302s E 302s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 302s E 302s E Please note and check the following: 302s E 302s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 302s E * The NumPy version is: "1.26.4" 302s E 302s E and make sure that they are the versions you expect. 302s E Please carefully study the documentation linked above for further help. 302s E 302s E Original error was: No module named 'numpy.core._multiarray_umath' 302s 302s The above exception was the direct cause of the following exception: 302s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 302s return _bootstrap._gcd_import(name[level:], package, level) 302s testsuite/MDAnalysisTests/__init__.py:125: in 302s from MDAnalysisTests.util import ( 302s testsuite/MDAnalysisTests/util.py:41: in 302s from numpy.testing import assert_warns 302s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 302s raise ImportError(msg) from e 302s E ImportError: Error importing numpy: you should not try to import numpy from 302s E its source directory; please exit the numpy source tree, and relaunch 302s E your python interpreter from there. 302s ______ ERROR collecting testsuite/MDAnalysisTests/coordinates/test_trc.py ______ 302s ImportError while importing test module '/tmp/autopkgtest.vhk5Bq/build.ka4/src/testsuite/MDAnalysisTests/coordinates/test_trc.py'. 302s Hint: make sure your test modules/packages have valid Python names. 302s Traceback: 302s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 302s from . import multiarray 302s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 302s from . import overrides 302s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 302s from numpy.core._multiarray_umath import ( 302s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 302s 302s During handling of the above exception, another exception occurred: 302s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 302s from numpy.__config__ import show as show_config 302s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 302s from numpy.core._multiarray_umath import ( 302s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 302s raise ImportError(msg) 302s E ImportError: 302s E 302s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 302s E 302s E Importing the numpy C-extensions failed. This error can happen for 302s E many reasons, often due to issues with your setup or how NumPy was 302s E installed. 302s E 302s E We have compiled some common reasons and troubleshooting tips at: 302s E 302s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 302s E 302s E Please note and check the following: 302s E 302s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 302s E * The NumPy version is: "1.26.4" 302s E 302s E and make sure that they are the versions you expect. 302s E Please carefully study the documentation linked above for further help. 302s E 302s E Original error was: No module named 'numpy.core._multiarray_umath' 302s 302s The above exception was the direct cause of the following exception: 302s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 302s return _bootstrap._gcd_import(name[level:], package, level) 302s testsuite/MDAnalysisTests/__init__.py:125: in 302s from MDAnalysisTests.util import ( 302s testsuite/MDAnalysisTests/util.py:41: in 302s from numpy.testing import assert_warns 302s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 302s raise ImportError(msg) from e 302s E ImportError: Error importing numpy: you should not try to import numpy from 302s E its source directory; please exit the numpy source tree, and relaunch 302s E your python interpreter from there. 302s ______ ERROR collecting testsuite/MDAnalysisTests/coordinates/test_trj.py ______ 302s ImportError while importing test module '/tmp/autopkgtest.vhk5Bq/build.ka4/src/testsuite/MDAnalysisTests/coordinates/test_trj.py'. 302s Hint: make sure your test modules/packages have valid Python names. 302s Traceback: 302s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 302s from . import multiarray 302s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 302s from . import overrides 302s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 302s from numpy.core._multiarray_umath import ( 302s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 302s 302s During handling of the above exception, another exception occurred: 302s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 302s from numpy.__config__ import show as show_config 302s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 302s from numpy.core._multiarray_umath import ( 302s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 302s raise ImportError(msg) 302s E ImportError: 302s E 302s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 302s E 302s E Importing the numpy C-extensions failed. This error can happen for 302s E many reasons, often due to issues with your setup or how NumPy was 302s E installed. 302s E 302s E We have compiled some common reasons and troubleshooting tips at: 302s E 302s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 302s E 302s E Please note and check the following: 302s E 302s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 302s E * The NumPy version is: "1.26.4" 302s E 302s E and make sure that they are the versions you expect. 302s E Please carefully study the documentation linked above for further help. 302s E 302s E Original error was: No module named 'numpy.core._multiarray_umath' 302s 302s The above exception was the direct cause of the following exception: 302s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 302s return _bootstrap._gcd_import(name[level:], package, level) 302s testsuite/MDAnalysisTests/__init__.py:125: in 302s from MDAnalysisTests.util import ( 302s testsuite/MDAnalysisTests/util.py:41: in 302s from numpy.testing import assert_warns 302s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 302s raise ImportError(msg) from e 302s E ImportError: Error importing numpy: you should not try to import numpy from 302s E its source directory; please exit the numpy source tree, and relaunch 302s E your python interpreter from there. 302s ______ ERROR collecting testsuite/MDAnalysisTests/coordinates/test_trz.py ______ 302s ImportError while importing test module '/tmp/autopkgtest.vhk5Bq/build.ka4/src/testsuite/MDAnalysisTests/coordinates/test_trz.py'. 302s Hint: make sure your test modules/packages have valid Python names. 302s Traceback: 302s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 302s from . import multiarray 302s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 302s from . import overrides 302s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 302s from numpy.core._multiarray_umath import ( 302s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 302s 302s During handling of the above exception, another exception occurred: 302s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 302s from numpy.__config__ import show as show_config 302s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 302s from numpy.core._multiarray_umath import ( 302s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 302s raise ImportError(msg) 302s E ImportError: 302s E 302s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 302s E 302s E Importing the numpy C-extensions failed. This error can happen for 302s E many reasons, often due to issues with your setup or how NumPy was 302s E installed. 302s E 302s E We have compiled some common reasons and troubleshooting tips at: 302s E 302s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 302s E 302s E Please note and check the following: 302s E 302s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 302s E * The NumPy version is: "1.26.4" 302s E 302s E and make sure that they are the versions you expect. 302s E Please carefully study the documentation linked above for further help. 302s E 302s E Original error was: No module named 'numpy.core._multiarray_umath' 302s 302s The above exception was the direct cause of the following exception: 302s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 302s return _bootstrap._gcd_import(name[level:], package, level) 302s testsuite/MDAnalysisTests/__init__.py:125: in 302s from MDAnalysisTests.util import ( 302s testsuite/MDAnalysisTests/util.py:41: in 302s from numpy.testing import assert_warns 302s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 302s raise ImportError(msg) from e 302s E ImportError: Error importing numpy: you should not try to import numpy from 302s E its source directory; please exit the numpy source tree, and relaunch 302s E your python interpreter from there. 302s _____ ERROR collecting testsuite/MDAnalysisTests/coordinates/test_txyz.py ______ 302s ImportError while importing test module '/tmp/autopkgtest.vhk5Bq/build.ka4/src/testsuite/MDAnalysisTests/coordinates/test_txyz.py'. 302s Hint: make sure your test modules/packages have valid Python names. 302s Traceback: 302s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 302s from . import multiarray 302s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 302s from . import overrides 302s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 302s from numpy.core._multiarray_umath import ( 302s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 302s 302s During handling of the above exception, another exception occurred: 302s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 302s from numpy.__config__ import show as show_config 302s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 302s from numpy.core._multiarray_umath import ( 302s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 302s raise ImportError(msg) 302s E ImportError: 302s E 302s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 302s E 302s E Importing the numpy C-extensions failed. This error can happen for 302s E many reasons, often due to issues with your setup or how NumPy was 302s E installed. 302s E 302s E We have compiled some common reasons and troubleshooting tips at: 302s E 302s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 302s E 302s E Please note and check the following: 302s E 302s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 302s E * The NumPy version is: "1.26.4" 302s E 302s E and make sure that they are the versions you expect. 302s E Please carefully study the documentation linked above for further help. 302s E 302s E Original error was: No module named 'numpy.core._multiarray_umath' 302s 302s The above exception was the direct cause of the following exception: 302s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 302s return _bootstrap._gcd_import(name[level:], package, level) 302s testsuite/MDAnalysisTests/__init__.py:125: in 302s from MDAnalysisTests.util import ( 302s testsuite/MDAnalysisTests/util.py:41: in 302s from numpy.testing import assert_warns 302s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 302s raise ImportError(msg) from e 302s E ImportError: Error importing numpy: you should not try to import numpy from 302s E its source directory; please exit the numpy source tree, and relaunch 302s E your python interpreter from there. 302s ____ ERROR collecting testsuite/MDAnalysisTests/coordinates/test_windows.py ____ 302s ImportError while importing test module '/tmp/autopkgtest.vhk5Bq/build.ka4/src/testsuite/MDAnalysisTests/coordinates/test_windows.py'. 302s Hint: make sure your test modules/packages have valid Python names. 302s Traceback: 302s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 302s from . import multiarray 302s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 302s from . import overrides 302s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 302s from numpy.core._multiarray_umath import ( 302s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 302s 302s During handling of the above exception, another exception occurred: 302s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 302s from numpy.__config__ import show as show_config 302s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 302s from numpy.core._multiarray_umath import ( 302s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 302s raise ImportError(msg) 302s E ImportError: 302s E 302s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 302s E 302s E Importing the numpy C-extensions failed. This error can happen for 302s E many reasons, often due to issues with your setup or how NumPy was 302s E installed. 302s E 302s E We have compiled some common reasons and troubleshooting tips at: 302s E 302s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 302s E 302s E Please note and check the following: 302s E 302s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 302s E * The NumPy version is: "1.26.4" 302s E 302s E and make sure that they are the versions you expect. 302s E Please carefully study the documentation linked above for further help. 302s E 302s E Original error was: No module named 'numpy.core._multiarray_umath' 302s 302s The above exception was the direct cause of the following exception: 302s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 302s return _bootstrap._gcd_import(name[level:], package, level) 302s testsuite/MDAnalysisTests/__init__.py:125: in 302s from MDAnalysisTests.util import ( 302s testsuite/MDAnalysisTests/util.py:41: in 302s from numpy.testing import assert_warns 302s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 302s raise ImportError(msg) from e 302s E ImportError: Error importing numpy: you should not try to import numpy from 302s E its source directory; please exit the numpy source tree, and relaunch 302s E your python interpreter from there. 302s __ ERROR collecting testsuite/MDAnalysisTests/coordinates/test_writer_api.py ___ 302s ImportError while importing test module '/tmp/autopkgtest.vhk5Bq/build.ka4/src/testsuite/MDAnalysisTests/coordinates/test_writer_api.py'. 302s Hint: make sure your test modules/packages have valid Python names. 302s Traceback: 302s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 302s from . import multiarray 302s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 302s from . import overrides 302s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 302s from numpy.core._multiarray_umath import ( 302s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 302s 302s During handling of the above exception, another exception occurred: 302s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 302s from numpy.__config__ import show as show_config 302s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 302s from numpy.core._multiarray_umath import ( 302s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 302s raise ImportError(msg) 302s E ImportError: 302s E 302s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 302s E 302s E Importing the numpy C-extensions failed. This error can happen for 302s E many reasons, often due to issues with your setup or how NumPy was 302s E installed. 302s E 302s E We have compiled some common reasons and troubleshooting tips at: 302s E 302s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 302s E 302s E Please note and check the following: 302s E 302s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 302s E * The NumPy version is: "1.26.4" 302s E 302s E and make sure that they are the versions you expect. 302s E Please carefully study the documentation linked above for further help. 302s E 302s E Original error was: No module named 'numpy.core._multiarray_umath' 302s 302s The above exception was the direct cause of the following exception: 302s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 302s return _bootstrap._gcd_import(name[level:], package, level) 302s testsuite/MDAnalysisTests/__init__.py:125: in 302s from MDAnalysisTests.util import ( 302s testsuite/MDAnalysisTests/util.py:41: in 302s from numpy.testing import assert_warns 302s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 302s raise ImportError(msg) from e 302s E ImportError: Error importing numpy: you should not try to import numpy from 302s E its source directory; please exit the numpy source tree, and relaunch 302s E your python interpreter from there. 302s _ ERROR collecting testsuite/MDAnalysisTests/coordinates/test_writer_registration.py _ 302s ImportError while importing test module '/tmp/autopkgtest.vhk5Bq/build.ka4/src/testsuite/MDAnalysisTests/coordinates/test_writer_registration.py'. 302s Hint: make sure your test modules/packages have valid Python names. 302s Traceback: 302s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 302s from . import multiarray 302s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 302s from . import overrides 302s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 302s from numpy.core._multiarray_umath import ( 302s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 302s 302s During handling of the above exception, another exception occurred: 302s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 302s from numpy.__config__ import show as show_config 302s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 302s from numpy.core._multiarray_umath import ( 302s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 302s raise ImportError(msg) 302s E ImportError: 302s E 302s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 302s E 302s E Importing the numpy C-extensions failed. This error can happen for 302s E many reasons, often due to issues with your setup or how NumPy was 302s E installed. 302s E 302s E We have compiled some common reasons and troubleshooting tips at: 302s E 302s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 302s E 302s E Please note and check the following: 302s E 302s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 302s E * The NumPy version is: "1.26.4" 302s E 302s E and make sure that they are the versions you expect. 302s E Please carefully study the documentation linked above for further help. 302s E 302s E Original error was: No module named 'numpy.core._multiarray_umath' 302s 302s The above exception was the direct cause of the following exception: 302s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 302s return _bootstrap._gcd_import(name[level:], package, level) 302s testsuite/MDAnalysisTests/__init__.py:125: in 302s from MDAnalysisTests.util import ( 302s testsuite/MDAnalysisTests/util.py:41: in 302s from numpy.testing import assert_warns 302s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 302s raise ImportError(msg) from e 302s E ImportError: Error importing numpy: you should not try to import numpy from 302s E its source directory; please exit the numpy source tree, and relaunch 302s E your python interpreter from there. 302s ______ ERROR collecting testsuite/MDAnalysisTests/coordinates/test_xdr.py ______ 302s ImportError while importing test module '/tmp/autopkgtest.vhk5Bq/build.ka4/src/testsuite/MDAnalysisTests/coordinates/test_xdr.py'. 302s Hint: make sure your test modules/packages have valid Python names. 302s Traceback: 302s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 302s from . import multiarray 302s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 302s from . import overrides 302s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 302s from numpy.core._multiarray_umath import ( 302s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 302s 302s During handling of the above exception, another exception occurred: 302s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 302s from numpy.__config__ import show as show_config 302s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 302s from numpy.core._multiarray_umath import ( 302s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 302s raise ImportError(msg) 302s E ImportError: 302s E 302s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 302s E 302s E Importing the numpy C-extensions failed. This error can happen for 302s E many reasons, often due to issues with your setup or how NumPy was 302s E installed. 302s E 302s E We have compiled some common reasons and troubleshooting tips at: 302s E 302s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 302s E 302s E Please note and check the following: 302s E 302s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 302s E * The NumPy version is: "1.26.4" 302s E 302s E and make sure that they are the versions you expect. 302s E Please carefully study the documentation linked above for further help. 302s E 302s E Original error was: No module named 'numpy.core._multiarray_umath' 302s 302s The above exception was the direct cause of the following exception: 302s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 302s return _bootstrap._gcd_import(name[level:], package, level) 302s testsuite/MDAnalysisTests/__init__.py:125: in 302s from MDAnalysisTests.util import ( 302s testsuite/MDAnalysisTests/util.py:41: in 302s from numpy.testing import assert_warns 302s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 302s raise ImportError(msg) from e 302s E ImportError: Error importing numpy: you should not try to import numpy from 302s E its source directory; please exit the numpy source tree, and relaunch 302s E your python interpreter from there. 302s ______ ERROR collecting testsuite/MDAnalysisTests/coordinates/test_xyz.py ______ 302s ImportError while importing test module '/tmp/autopkgtest.vhk5Bq/build.ka4/src/testsuite/MDAnalysisTests/coordinates/test_xyz.py'. 302s Hint: make sure your test modules/packages have valid Python names. 302s Traceback: 302s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 302s from . import multiarray 302s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 302s from . import overrides 302s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 302s from numpy.core._multiarray_umath import ( 302s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 302s 302s During handling of the above exception, another exception occurred: 302s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 302s from numpy.__config__ import show as show_config 302s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 302s from numpy.core._multiarray_umath import ( 302s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 302s raise ImportError(msg) 302s E ImportError: 302s E 302s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 302s E 302s E Importing the numpy C-extensions failed. This error can happen for 302s E many reasons, often due to issues with your setup or how NumPy was 302s E installed. 302s E 302s E We have compiled some common reasons and troubleshooting tips at: 302s E 302s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 302s E 302s E Please note and check the following: 302s E 302s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 302s E * The NumPy version is: "1.26.4" 302s E 302s E and make sure that they are the versions you expect. 302s E Please carefully study the documentation linked above for further help. 302s E 302s E Original error was: No module named 'numpy.core._multiarray_umath' 302s 302s The above exception was the direct cause of the following exception: 302s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 302s return _bootstrap._gcd_import(name[level:], package, level) 302s testsuite/MDAnalysisTests/__init__.py:125: in 302s from MDAnalysisTests.util import ( 302s testsuite/MDAnalysisTests/util.py:41: in 302s from numpy.testing import assert_warns 302s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 302s raise ImportError(msg) from e 302s E ImportError: Error importing numpy: you should not try to import numpy from 302s E its source directory; please exit the numpy source tree, and relaunch 302s E your python interpreter from there. 302s ______ ERROR collecting testsuite/MDAnalysisTests/core/test_accessors.py _______ 302s ImportError while importing test module '/tmp/autopkgtest.vhk5Bq/build.ka4/src/testsuite/MDAnalysisTests/core/test_accessors.py'. 302s Hint: make sure your test modules/packages have valid Python names. 302s Traceback: 302s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 302s from . import multiarray 302s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 302s from . import overrides 302s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 302s from numpy.core._multiarray_umath import ( 302s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 302s 302s During handling of the above exception, another exception occurred: 302s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 302s from numpy.__config__ import show as show_config 302s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 302s from numpy.core._multiarray_umath import ( 302s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 302s raise ImportError(msg) 302s E ImportError: 302s E 302s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 302s E 302s E Importing the numpy C-extensions failed. This error can happen for 302s E many reasons, often due to issues with your setup or how NumPy was 302s E installed. 302s E 302s E We have compiled some common reasons and troubleshooting tips at: 302s E 302s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 302s E 302s E Please note and check the following: 302s E 302s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 302s E * The NumPy version is: "1.26.4" 302s E 302s E and make sure that they are the versions you expect. 302s E Please carefully study the documentation linked above for further help. 302s E 302s E Original error was: No module named 'numpy.core._multiarray_umath' 302s 302s The above exception was the direct cause of the following exception: 302s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 302s return _bootstrap._gcd_import(name[level:], package, level) 302s testsuite/MDAnalysisTests/__init__.py:125: in 302s from MDAnalysisTests.util import ( 302s testsuite/MDAnalysisTests/util.py:41: in 302s from numpy.testing import assert_warns 302s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 302s raise ImportError(msg) from e 302s E ImportError: Error importing numpy: you should not try to import numpy from 302s E its source directory; please exit the numpy source tree, and relaunch 302s E your python interpreter from there. 302s ______ ERROR collecting testsuite/MDAnalysisTests/core/test_accumulate.py ______ 302s ImportError while importing test module '/tmp/autopkgtest.vhk5Bq/build.ka4/src/testsuite/MDAnalysisTests/core/test_accumulate.py'. 302s Hint: make sure your test modules/packages have valid Python names. 302s Traceback: 302s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 302s from . import multiarray 302s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 302s from . import overrides 302s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 302s from numpy.core._multiarray_umath import ( 302s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 302s 302s During handling of the above exception, another exception occurred: 302s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 302s from numpy.__config__ import show as show_config 302s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 302s from numpy.core._multiarray_umath import ( 302s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 302s raise ImportError(msg) 302s E ImportError: 302s E 302s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 302s E 302s E Importing the numpy C-extensions failed. This error can happen for 302s E many reasons, often due to issues with your setup or how NumPy was 302s E installed. 302s E 302s E We have compiled some common reasons and troubleshooting tips at: 302s E 302s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 302s E 302s E Please note and check the following: 302s E 302s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 302s E * The NumPy version is: "1.26.4" 302s E 302s E and make sure that they are the versions you expect. 302s E Please carefully study the documentation linked above for further help. 302s E 302s E Original error was: No module named 'numpy.core._multiarray_umath' 302s 302s The above exception was the direct cause of the following exception: 302s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 302s return _bootstrap._gcd_import(name[level:], package, level) 302s testsuite/MDAnalysisTests/__init__.py:125: in 302s from MDAnalysisTests.util import ( 302s testsuite/MDAnalysisTests/util.py:41: in 302s from numpy.testing import assert_warns 302s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 302s raise ImportError(msg) from e 302s E ImportError: Error importing numpy: you should not try to import numpy from 302s E its source directory; please exit the numpy source tree, and relaunch 302s E your python interpreter from there. 302s _________ ERROR collecting testsuite/MDAnalysisTests/core/test_atom.py _________ 302s ImportError while importing test module '/tmp/autopkgtest.vhk5Bq/build.ka4/src/testsuite/MDAnalysisTests/core/test_atom.py'. 302s Hint: make sure your test modules/packages have valid Python names. 302s Traceback: 302s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 302s from . import multiarray 302s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 302s from . import overrides 302s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 302s from numpy.core._multiarray_umath import ( 302s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 302s 302s During handling of the above exception, another exception occurred: 302s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 302s from numpy.__config__ import show as show_config 302s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 302s from numpy.core._multiarray_umath import ( 302s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 302s raise ImportError(msg) 302s E ImportError: 302s E 302s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 302s E 302s E Importing the numpy C-extensions failed. This error can happen for 302s E many reasons, often due to issues with your setup or how NumPy was 302s E installed. 302s E 302s E We have compiled some common reasons and troubleshooting tips at: 302s E 302s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 302s E 302s E Please note and check the following: 302s E 302s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 302s E * The NumPy version is: "1.26.4" 302s E 302s E and make sure that they are the versions you expect. 302s E Please carefully study the documentation linked above for further help. 302s E 302s E Original error was: No module named 'numpy.core._multiarray_umath' 302s 302s The above exception was the direct cause of the following exception: 302s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 302s return _bootstrap._gcd_import(name[level:], package, level) 302s testsuite/MDAnalysisTests/__init__.py:125: in 302s from MDAnalysisTests.util import ( 302s testsuite/MDAnalysisTests/util.py:41: in 302s from numpy.testing import assert_warns 302s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 302s raise ImportError(msg) from e 302s E ImportError: Error importing numpy: you should not try to import numpy from 302s E its source directory; please exit the numpy source tree, and relaunch 302s E your python interpreter from there. 302s ______ ERROR collecting testsuite/MDAnalysisTests/core/test_atomgroup.py _______ 302s ImportError while importing test module '/tmp/autopkgtest.vhk5Bq/build.ka4/src/testsuite/MDAnalysisTests/core/test_atomgroup.py'. 302s Hint: make sure your test modules/packages have valid Python names. 302s Traceback: 302s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 302s from . import multiarray 302s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 302s from . import overrides 302s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 302s from numpy.core._multiarray_umath import ( 302s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 302s 302s During handling of the above exception, another exception occurred: 302s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 302s from numpy.__config__ import show as show_config 302s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 302s from numpy.core._multiarray_umath import ( 302s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 302s raise ImportError(msg) 302s E ImportError: 302s E 302s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 302s E 302s E Importing the numpy C-extensions failed. This error can happen for 302s E many reasons, often due to issues with your setup or how NumPy was 302s E installed. 302s E 302s E We have compiled some common reasons and troubleshooting tips at: 302s E 302s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 302s E 302s E Please note and check the following: 302s E 302s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 302s E * The NumPy version is: "1.26.4" 302s E 302s E and make sure that they are the versions you expect. 302s E Please carefully study the documentation linked above for further help. 302s E 302s E Original error was: No module named 'numpy.core._multiarray_umath' 302s 302s The above exception was the direct cause of the following exception: 302s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 302s return _bootstrap._gcd_import(name[level:], package, level) 302s testsuite/MDAnalysisTests/__init__.py:125: in 302s from MDAnalysisTests.util import ( 302s testsuite/MDAnalysisTests/util.py:41: in 302s from numpy.testing import assert_warns 302s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 302s raise ImportError(msg) from e 302s E ImportError: Error importing numpy: you should not try to import numpy from 302s E its source directory; please exit the numpy source tree, and relaunch 302s E your python interpreter from there. 302s ____ ERROR collecting testsuite/MDAnalysisTests/core/test_atomselections.py ____ 302s ImportError while importing test module '/tmp/autopkgtest.vhk5Bq/build.ka4/src/testsuite/MDAnalysisTests/core/test_atomselections.py'. 302s Hint: make sure your test modules/packages have valid Python names. 302s Traceback: 302s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 302s from . import multiarray 302s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 302s from . import overrides 302s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 302s from numpy.core._multiarray_umath import ( 302s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 302s 302s During handling of the above exception, another exception occurred: 302s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 302s from numpy.__config__ import show as show_config 302s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 302s from numpy.core._multiarray_umath import ( 302s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 302s raise ImportError(msg) 302s E ImportError: 302s E 302s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 302s E 302s E Importing the numpy C-extensions failed. This error can happen for 302s E many reasons, often due to issues with your setup or how NumPy was 302s E installed. 302s E 302s E We have compiled some common reasons and troubleshooting tips at: 302s E 302s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 302s E 302s E Please note and check the following: 302s E 302s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 302s E * The NumPy version is: "1.26.4" 302s E 302s E and make sure that they are the versions you expect. 302s E Please carefully study the documentation linked above for further help. 302s E 302s E Original error was: No module named 'numpy.core._multiarray_umath' 302s 302s The above exception was the direct cause of the following exception: 302s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 302s return _bootstrap._gcd_import(name[level:], package, level) 302s testsuite/MDAnalysisTests/__init__.py:125: in 302s from MDAnalysisTests.util import ( 302s testsuite/MDAnalysisTests/util.py:41: in 302s from numpy.testing import assert_warns 302s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 302s raise ImportError(msg) from e 302s E ImportError: Error importing numpy: you should not try to import numpy from 302s E its source directory; please exit the numpy source tree, and relaunch 302s E your python interpreter from there. 302s _______ ERROR collecting testsuite/MDAnalysisTests/core/test_copying.py ________ 302s ImportError while importing test module '/tmp/autopkgtest.vhk5Bq/build.ka4/src/testsuite/MDAnalysisTests/core/test_copying.py'. 302s Hint: make sure your test modules/packages have valid Python names. 302s Traceback: 302s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 302s from . import multiarray 302s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 302s from . import overrides 302s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 302s from numpy.core._multiarray_umath import ( 302s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 302s 302s During handling of the above exception, another exception occurred: 302s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 302s from numpy.__config__ import show as show_config 302s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 302s from numpy.core._multiarray_umath import ( 302s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 302s raise ImportError(msg) 302s E ImportError: 302s E 302s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 302s E 302s E Importing the numpy C-extensions failed. This error can happen for 302s E many reasons, often due to issues with your setup or how NumPy was 302s E installed. 302s E 302s E We have compiled some common reasons and troubleshooting tips at: 302s E 302s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 302s E 302s E Please note and check the following: 302s E 302s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 302s E * The NumPy version is: "1.26.4" 302s E 302s E and make sure that they are the versions you expect. 302s E Please carefully study the documentation linked above for further help. 302s E 302s E Original error was: No module named 'numpy.core._multiarray_umath' 302s 302s The above exception was the direct cause of the following exception: 302s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 302s return _bootstrap._gcd_import(name[level:], package, level) 302s testsuite/MDAnalysisTests/__init__.py:125: in 302s from MDAnalysisTests.util import ( 302s testsuite/MDAnalysisTests/util.py:41: in 302s from numpy.testing import assert_warns 302s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 302s raise ImportError(msg) from e 302s E ImportError: Error importing numpy: you should not try to import numpy from 302s E its source directory; please exit the numpy source tree, and relaunch 302s E your python interpreter from there. 302s ______ ERROR collecting testsuite/MDAnalysisTests/core/test_fragments.py _______ 302s ImportError while importing test module '/tmp/autopkgtest.vhk5Bq/build.ka4/src/testsuite/MDAnalysisTests/core/test_fragments.py'. 302s Hint: make sure your test modules/packages have valid Python names. 302s Traceback: 302s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 302s from . import multiarray 302s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 302s from . import overrides 302s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 302s from numpy.core._multiarray_umath import ( 302s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 302s 302s During handling of the above exception, another exception occurred: 302s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 302s from numpy.__config__ import show as show_config 302s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 302s from numpy.core._multiarray_umath import ( 302s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 302s raise ImportError(msg) 302s E ImportError: 302s E 302s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 302s E 302s E Importing the numpy C-extensions failed. This error can happen for 302s E many reasons, often due to issues with your setup or how NumPy was 302s E installed. 302s E 302s E We have compiled some common reasons and troubleshooting tips at: 302s E 302s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 302s E 302s E Please note and check the following: 302s E 302s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 302s E * The NumPy version is: "1.26.4" 302s E 302s E and make sure that they are the versions you expect. 302s E Please carefully study the documentation linked above for further help. 302s E 302s E Original error was: No module named 'numpy.core._multiarray_umath' 302s 302s The above exception was the direct cause of the following exception: 302s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 302s return _bootstrap._gcd_import(name[level:], package, level) 302s testsuite/MDAnalysisTests/__init__.py:125: in 302s from MDAnalysisTests.util import ( 302s testsuite/MDAnalysisTests/util.py:41: in 302s from numpy.testing import assert_warns 302s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 302s raise ImportError(msg) from e 302s E ImportError: Error importing numpy: you should not try to import numpy from 302s E its source directory; please exit the numpy source tree, and relaunch 302s E your python interpreter from there. 302s __ ERROR collecting testsuite/MDAnalysisTests/core/test_group_traj_access.py ___ 302s ImportError while importing test module '/tmp/autopkgtest.vhk5Bq/build.ka4/src/testsuite/MDAnalysisTests/core/test_group_traj_access.py'. 302s Hint: make sure your test modules/packages have valid Python names. 302s Traceback: 302s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 302s from . import multiarray 302s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 302s from . import overrides 302s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 302s from numpy.core._multiarray_umath import ( 302s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 302s 302s During handling of the above exception, another exception occurred: 302s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 302s from numpy.__config__ import show as show_config 302s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 302s from numpy.core._multiarray_umath import ( 302s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 302s raise ImportError(msg) 302s E ImportError: 302s E 302s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 302s E 302s E Importing the numpy C-extensions failed. This error can happen for 302s E many reasons, often due to issues with your setup or how NumPy was 302s E installed. 302s E 302s E We have compiled some common reasons and troubleshooting tips at: 302s E 302s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 302s E 302s E Please note and check the following: 302s E 302s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 302s E * The NumPy version is: "1.26.4" 302s E 302s E and make sure that they are the versions you expect. 302s E Please carefully study the documentation linked above for further help. 302s E 302s E Original error was: No module named 'numpy.core._multiarray_umath' 302s 302s The above exception was the direct cause of the following exception: 302s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 302s return _bootstrap._gcd_import(name[level:], package, level) 302s testsuite/MDAnalysisTests/__init__.py:125: in 302s from MDAnalysisTests.util import ( 302s testsuite/MDAnalysisTests/util.py:41: in 302s from numpy.testing import assert_warns 302s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 302s raise ImportError(msg) from e 302s E ImportError: Error importing numpy: you should not try to import numpy from 302s E its source directory; please exit the numpy source tree, and relaunch 302s E your python interpreter from there. 302s ________ ERROR collecting testsuite/MDAnalysisTests/core/test_groups.py ________ 302s ImportError while importing test module '/tmp/autopkgtest.vhk5Bq/build.ka4/src/testsuite/MDAnalysisTests/core/test_groups.py'. 302s Hint: make sure your test modules/packages have valid Python names. 302s Traceback: 302s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 302s from . import multiarray 302s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 302s from . import overrides 302s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 302s from numpy.core._multiarray_umath import ( 302s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 302s 302s During handling of the above exception, another exception occurred: 302s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 302s from numpy.__config__ import show as show_config 302s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 302s from numpy.core._multiarray_umath import ( 302s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 302s raise ImportError(msg) 302s E ImportError: 302s E 302s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 302s E 302s E Importing the numpy C-extensions failed. This error can happen for 302s E many reasons, often due to issues with your setup or how NumPy was 302s E installed. 302s E 302s E We have compiled some common reasons and troubleshooting tips at: 302s E 302s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 302s E 302s E Please note and check the following: 302s E 302s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 302s E * The NumPy version is: "1.26.4" 302s E 302s E and make sure that they are the versions you expect. 302s E Please carefully study the documentation linked above for further help. 302s E 302s E Original error was: No module named 'numpy.core._multiarray_umath' 302s 302s The above exception was the direct cause of the following exception: 302s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 302s return _bootstrap._gcd_import(name[level:], package, level) 302s testsuite/MDAnalysisTests/__init__.py:125: in 302s from MDAnalysisTests.util import ( 302s testsuite/MDAnalysisTests/util.py:41: in 302s from numpy.testing import assert_warns 302s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 302s raise ImportError(msg) from e 302s E ImportError: Error importing numpy: you should not try to import numpy from 302s E its source directory; please exit the numpy source tree, and relaunch 302s E your python interpreter from there. 302s _____ ERROR collecting testsuite/MDAnalysisTests/core/test_index_dtype.py ______ 302s ImportError while importing test module '/tmp/autopkgtest.vhk5Bq/build.ka4/src/testsuite/MDAnalysisTests/core/test_index_dtype.py'. 302s Hint: make sure your test modules/packages have valid Python names. 302s Traceback: 302s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 302s from . import multiarray 302s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 302s from . import overrides 302s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 302s from numpy.core._multiarray_umath import ( 302s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 302s 302s During handling of the above exception, another exception occurred: 302s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 302s from numpy.__config__ import show as show_config 302s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 302s from numpy.core._multiarray_umath import ( 302s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 302s raise ImportError(msg) 302s E ImportError: 302s E 302s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 302s E 302s E Importing the numpy C-extensions failed. This error can happen for 302s E many reasons, often due to issues with your setup or how NumPy was 302s E installed. 302s E 302s E We have compiled some common reasons and troubleshooting tips at: 302s E 302s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 302s E 302s E Please note and check the following: 302s E 302s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 302s E * The NumPy version is: "1.26.4" 302s E 302s E and make sure that they are the versions you expect. 302s E Please carefully study the documentation linked above for further help. 302s E 302s E Original error was: No module named 'numpy.core._multiarray_umath' 302s 302s The above exception was the direct cause of the following exception: 302s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 302s return _bootstrap._gcd_import(name[level:], package, level) 302s testsuite/MDAnalysisTests/__init__.py:125: in 302s from MDAnalysisTests.util import ( 302s testsuite/MDAnalysisTests/util.py:41: in 302s from numpy.testing import assert_warns 302s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 302s raise ImportError(msg) from e 302s E ImportError: Error importing numpy: you should not try to import numpy from 302s E its source directory; please exit the numpy source tree, and relaunch 302s E your python interpreter from there. 302s _______ ERROR collecting testsuite/MDAnalysisTests/core/test_requires.py _______ 302s ImportError while importing test module '/tmp/autopkgtest.vhk5Bq/build.ka4/src/testsuite/MDAnalysisTests/core/test_requires.py'. 302s Hint: make sure your test modules/packages have valid Python names. 302s Traceback: 302s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 302s from . import multiarray 302s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 302s from . import overrides 302s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 302s from numpy.core._multiarray_umath import ( 302s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 302s 302s During handling of the above exception, another exception occurred: 302s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 302s from numpy.__config__ import show as show_config 302s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 302s from numpy.core._multiarray_umath import ( 302s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 302s raise ImportError(msg) 302s E ImportError: 302s E 302s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 302s E 302s E Importing the numpy C-extensions failed. This error can happen for 302s E many reasons, often due to issues with your setup or how NumPy was 302s E installed. 302s E 302s E We have compiled some common reasons and troubleshooting tips at: 302s E 302s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 302s E 302s E Please note and check the following: 302s E 302s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 302s E * The NumPy version is: "1.26.4" 302s E 302s E and make sure that they are the versions you expect. 302s E Please carefully study the documentation linked above for further help. 302s E 302s E Original error was: No module named 'numpy.core._multiarray_umath' 302s 302s The above exception was the direct cause of the following exception: 302s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 302s return _bootstrap._gcd_import(name[level:], package, level) 302s testsuite/MDAnalysisTests/__init__.py:125: in 302s from MDAnalysisTests.util import ( 302s testsuite/MDAnalysisTests/util.py:41: in 302s from numpy.testing import assert_warns 302s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 302s raise ImportError(msg) from e 302s E ImportError: Error importing numpy: you should not try to import numpy from 302s E its source directory; please exit the numpy source tree, and relaunch 302s E your python interpreter from there. 302s _______ ERROR collecting testsuite/MDAnalysisTests/core/test_residue.py ________ 302s ImportError while importing test module '/tmp/autopkgtest.vhk5Bq/build.ka4/src/testsuite/MDAnalysisTests/core/test_residue.py'. 302s Hint: make sure your test modules/packages have valid Python names. 302s Traceback: 302s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 302s from . import multiarray 302s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 302s from . import overrides 302s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 302s from numpy.core._multiarray_umath import ( 302s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 302s 302s During handling of the above exception, another exception occurred: 302s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 302s from numpy.__config__ import show as show_config 302s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 302s from numpy.core._multiarray_umath import ( 302s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 302s raise ImportError(msg) 302s E ImportError: 302s E 302s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 302s E 302s E Importing the numpy C-extensions failed. This error can happen for 302s E many reasons, often due to issues with your setup or how NumPy was 302s E installed. 302s E 302s E We have compiled some common reasons and troubleshooting tips at: 302s E 302s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 302s E 302s E Please note and check the following: 302s E 302s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 302s E * The NumPy version is: "1.26.4" 302s E 302s E and make sure that they are the versions you expect. 302s E Please carefully study the documentation linked above for further help. 302s E 302s E Original error was: No module named 'numpy.core._multiarray_umath' 302s 302s The above exception was the direct cause of the following exception: 302s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 302s return _bootstrap._gcd_import(name[level:], package, level) 302s testsuite/MDAnalysisTests/__init__.py:125: in 302s from MDAnalysisTests.util import ( 302s testsuite/MDAnalysisTests/util.py:41: in 302s from numpy.testing import assert_warns 302s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 302s raise ImportError(msg) from e 302s E ImportError: Error importing numpy: you should not try to import numpy from 302s E its source directory; please exit the numpy source tree, and relaunch 302s E your python interpreter from there. 302s _____ ERROR collecting testsuite/MDAnalysisTests/core/test_residuegroup.py _____ 302s ImportError while importing test module '/tmp/autopkgtest.vhk5Bq/build.ka4/src/testsuite/MDAnalysisTests/core/test_residuegroup.py'. 302s Hint: make sure your test modules/packages have valid Python names. 302s Traceback: 302s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 302s from . import multiarray 302s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 302s from . import overrides 302s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 302s from numpy.core._multiarray_umath import ( 302s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 302s 302s During handling of the above exception, another exception occurred: 302s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 302s from numpy.__config__ import show as show_config 302s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 302s from numpy.core._multiarray_umath import ( 302s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 302s raise ImportError(msg) 302s E ImportError: 302s E 302s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 302s E 302s E Importing the numpy C-extensions failed. This error can happen for 302s E many reasons, often due to issues with your setup or how NumPy was 302s E installed. 302s E 302s E We have compiled some common reasons and troubleshooting tips at: 302s E 302s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 302s E 302s E Please note and check the following: 302s E 302s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 302s E * The NumPy version is: "1.26.4" 302s E 302s E and make sure that they are the versions you expect. 302s E Please carefully study the documentation linked above for further help. 302s E 302s E Original error was: No module named 'numpy.core._multiarray_umath' 302s 302s The above exception was the direct cause of the following exception: 302s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 302s return _bootstrap._gcd_import(name[level:], package, level) 302s testsuite/MDAnalysisTests/__init__.py:125: in 302s from MDAnalysisTests.util import ( 302s testsuite/MDAnalysisTests/util.py:41: in 302s from numpy.testing import assert_warns 302s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 302s raise ImportError(msg) from e 302s E ImportError: Error importing numpy: you should not try to import numpy from 302s E its source directory; please exit the numpy source tree, and relaunch 302s E your python interpreter from there. 302s _______ ERROR collecting testsuite/MDAnalysisTests/core/test_segment.py ________ 302s ImportError while importing test module '/tmp/autopkgtest.vhk5Bq/build.ka4/src/testsuite/MDAnalysisTests/core/test_segment.py'. 302s Hint: make sure your test modules/packages have valid Python names. 302s Traceback: 302s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 302s from . import multiarray 302s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 302s from . import overrides 302s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 302s from numpy.core._multiarray_umath import ( 302s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 302s 302s During handling of the above exception, another exception occurred: 302s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 302s from numpy.__config__ import show as show_config 302s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 302s from numpy.core._multiarray_umath import ( 302s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 302s raise ImportError(msg) 302s E ImportError: 302s E 302s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 302s E 302s E Importing the numpy C-extensions failed. This error can happen for 302s E many reasons, often due to issues with your setup or how NumPy was 302s E installed. 302s E 302s E We have compiled some common reasons and troubleshooting tips at: 302s E 302s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 302s E 302s E Please note and check the following: 302s E 302s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 302s E * The NumPy version is: "1.26.4" 302s E 302s E and make sure that they are the versions you expect. 302s E Please carefully study the documentation linked above for further help. 302s E 302s E Original error was: No module named 'numpy.core._multiarray_umath' 302s 302s The above exception was the direct cause of the following exception: 302s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 302s return _bootstrap._gcd_import(name[level:], package, level) 302s testsuite/MDAnalysisTests/__init__.py:125: in 302s from MDAnalysisTests.util import ( 302s testsuite/MDAnalysisTests/util.py:41: in 302s from numpy.testing import assert_warns 302s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 302s raise ImportError(msg) from e 302s E ImportError: Error importing numpy: you should not try to import numpy from 302s E its source directory; please exit the numpy source tree, and relaunch 302s E your python interpreter from there. 302s _____ ERROR collecting testsuite/MDAnalysisTests/core/test_segmentgroup.py _____ 302s ImportError while importing test module '/tmp/autopkgtest.vhk5Bq/build.ka4/src/testsuite/MDAnalysisTests/core/test_segmentgroup.py'. 302s Hint: make sure your test modules/packages have valid Python names. 302s Traceback: 302s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 302s from . import multiarray 302s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 302s from . import overrides 302s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 302s from numpy.core._multiarray_umath import ( 302s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 302s 302s During handling of the above exception, another exception occurred: 302s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 302s from numpy.__config__ import show as show_config 302s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 302s from numpy.core._multiarray_umath import ( 302s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 302s raise ImportError(msg) 302s E ImportError: 302s E 302s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 302s E 302s E Importing the numpy C-extensions failed. This error can happen for 302s E many reasons, often due to issues with your setup or how NumPy was 302s E installed. 302s E 302s E We have compiled some common reasons and troubleshooting tips at: 302s E 302s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 302s E 302s E Please note and check the following: 302s E 302s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 302s E * The NumPy version is: "1.26.4" 302s E 302s E and make sure that they are the versions you expect. 302s E Please carefully study the documentation linked above for further help. 302s E 302s E Original error was: No module named 'numpy.core._multiarray_umath' 302s 302s The above exception was the direct cause of the following exception: 302s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 302s return _bootstrap._gcd_import(name[level:], package, level) 302s testsuite/MDAnalysisTests/__init__.py:125: in 302s from MDAnalysisTests.util import ( 302s testsuite/MDAnalysisTests/util.py:41: in 302s from numpy.testing import assert_warns 302s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 302s raise ImportError(msg) from e 302s E ImportError: Error importing numpy: you should not try to import numpy from 302s E its source directory; please exit the numpy source tree, and relaunch 302s E your python interpreter from there. 302s _______ ERROR collecting testsuite/MDAnalysisTests/core/test_topology.py _______ 302s ImportError while importing test module '/tmp/autopkgtest.vhk5Bq/build.ka4/src/testsuite/MDAnalysisTests/core/test_topology.py'. 302s Hint: make sure your test modules/packages have valid Python names. 302s Traceback: 302s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 302s from . import multiarray 302s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 302s from . import overrides 302s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 302s from numpy.core._multiarray_umath import ( 302s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 302s 302s During handling of the above exception, another exception occurred: 302s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 302s from numpy.__config__ import show as show_config 302s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 302s from numpy.core._multiarray_umath import ( 302s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 302s raise ImportError(msg) 302s E ImportError: 302s E 302s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 302s E 302s E Importing the numpy C-extensions failed. This error can happen for 302s E many reasons, often due to issues with your setup or how NumPy was 302s E installed. 302s E 302s E We have compiled some common reasons and troubleshooting tips at: 302s E 302s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 302s E 302s E Please note and check the following: 302s E 302s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 302s E * The NumPy version is: "1.26.4" 302s E 302s E and make sure that they are the versions you expect. 302s E Please carefully study the documentation linked above for further help. 302s E 302s E Original error was: No module named 'numpy.core._multiarray_umath' 302s 302s The above exception was the direct cause of the following exception: 302s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 302s return _bootstrap._gcd_import(name[level:], package, level) 302s testsuite/MDAnalysisTests/__init__.py:125: in 302s from MDAnalysisTests.util import ( 302s testsuite/MDAnalysisTests/util.py:41: in 302s from numpy.testing import assert_warns 302s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 302s raise ImportError(msg) from e 302s E ImportError: Error importing numpy: you should not try to import numpy from 302s E its source directory; please exit the numpy source tree, and relaunch 302s E your python interpreter from there. 302s ____ ERROR collecting testsuite/MDAnalysisTests/core/test_topologyattrs.py _____ 302s ImportError while importing test module '/tmp/autopkgtest.vhk5Bq/build.ka4/src/testsuite/MDAnalysisTests/core/test_topologyattrs.py'. 302s Hint: make sure your test modules/packages have valid Python names. 302s Traceback: 302s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 302s from . import multiarray 302s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 302s from . import overrides 302s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 302s from numpy.core._multiarray_umath import ( 302s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 302s 302s During handling of the above exception, another exception occurred: 302s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 302s from numpy.__config__ import show as show_config 302s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 302s from numpy.core._multiarray_umath import ( 302s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 302s raise ImportError(msg) 302s E ImportError: 302s E 302s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 302s E 302s E Importing the numpy C-extensions failed. This error can happen for 302s E many reasons, often due to issues with your setup or how NumPy was 302s E installed. 302s E 302s E We have compiled some common reasons and troubleshooting tips at: 302s E 302s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 302s E 302s E Please note and check the following: 302s E 302s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 302s E * The NumPy version is: "1.26.4" 302s E 302s E and make sure that they are the versions you expect. 302s E Please carefully study the documentation linked above for further help. 302s E 302s E Original error was: No module named 'numpy.core._multiarray_umath' 302s 302s The above exception was the direct cause of the following exception: 302s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 302s return _bootstrap._gcd_import(name[level:], package, level) 302s testsuite/MDAnalysisTests/__init__.py:125: in 302s from MDAnalysisTests.util import ( 302s testsuite/MDAnalysisTests/util.py:41: in 302s from numpy.testing import assert_warns 302s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 302s raise ImportError(msg) from e 302s E ImportError: Error importing numpy: you should not try to import numpy from 302s E its source directory; please exit the numpy source tree, and relaunch 302s E your python interpreter from there. 302s ___ ERROR collecting testsuite/MDAnalysisTests/core/test_topologyobjects.py ____ 302s ImportError while importing test module '/tmp/autopkgtest.vhk5Bq/build.ka4/src/testsuite/MDAnalysisTests/core/test_topologyobjects.py'. 302s Hint: make sure your test modules/packages have valid Python names. 302s Traceback: 302s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 302s from . import multiarray 302s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 302s from . import overrides 302s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 302s from numpy.core._multiarray_umath import ( 302s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 302s 302s During handling of the above exception, another exception occurred: 302s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 302s from numpy.__config__ import show as show_config 302s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 302s from numpy.core._multiarray_umath import ( 302s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 302s raise ImportError(msg) 302s E ImportError: 302s E 302s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 302s E 302s E Importing the numpy C-extensions failed. This error can happen for 302s E many reasons, often due to issues with your setup or how NumPy was 302s E installed. 302s E 302s E We have compiled some common reasons and troubleshooting tips at: 302s E 302s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 302s E 302s E Please note and check the following: 302s E 302s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 302s E * The NumPy version is: "1.26.4" 302s E 302s E and make sure that they are the versions you expect. 302s E Please carefully study the documentation linked above for further help. 302s E 302s E Original error was: No module named 'numpy.core._multiarray_umath' 302s 302s The above exception was the direct cause of the following exception: 302s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 302s return _bootstrap._gcd_import(name[level:], package, level) 302s testsuite/MDAnalysisTests/__init__.py:125: in 302s from MDAnalysisTests.util import ( 302s testsuite/MDAnalysisTests/util.py:41: in 302s from numpy.testing import assert_warns 302s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 302s raise ImportError(msg) from e 302s E ImportError: Error importing numpy: you should not try to import numpy from 302s E its source directory; please exit the numpy source tree, and relaunch 302s E your python interpreter from there. 302s _______ ERROR collecting testsuite/MDAnalysisTests/core/test_universe.py _______ 302s ImportError while importing test module '/tmp/autopkgtest.vhk5Bq/build.ka4/src/testsuite/MDAnalysisTests/core/test_universe.py'. 302s Hint: make sure your test modules/packages have valid Python names. 302s Traceback: 302s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 302s from . import multiarray 302s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 302s from . import overrides 302s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 302s from numpy.core._multiarray_umath import ( 302s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 302s 302s During handling of the above exception, another exception occurred: 302s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 302s from numpy.__config__ import show as show_config 302s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 302s from numpy.core._multiarray_umath import ( 302s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 302s raise ImportError(msg) 302s E ImportError: 302s E 302s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 302s E 302s E Importing the numpy C-extensions failed. This error can happen for 302s E many reasons, often due to issues with your setup or how NumPy was 302s E installed. 302s E 302s E We have compiled some common reasons and troubleshooting tips at: 302s E 302s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 302s E 302s E Please note and check the following: 302s E 302s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 302s E * The NumPy version is: "1.26.4" 302s E 302s E and make sure that they are the versions you expect. 302s E Please carefully study the documentation linked above for further help. 302s E 302s E Original error was: No module named 'numpy.core._multiarray_umath' 302s 302s The above exception was the direct cause of the following exception: 302s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 302s return _bootstrap._gcd_import(name[level:], package, level) 302s testsuite/MDAnalysisTests/__init__.py:125: in 302s from MDAnalysisTests.util import ( 302s testsuite/MDAnalysisTests/util.py:41: in 302s from numpy.testing import assert_warns 302s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 302s raise ImportError(msg) from e 302s E ImportError: Error importing numpy: you should not try to import numpy from 302s E its source directory; please exit the numpy source tree, and relaunch 302s E your python interpreter from there. 302s ________ ERROR collecting testsuite/MDAnalysisTests/core/test_unwrap.py ________ 302s ImportError while importing test module '/tmp/autopkgtest.vhk5Bq/build.ka4/src/testsuite/MDAnalysisTests/core/test_unwrap.py'. 302s Hint: make sure your test modules/packages have valid Python names. 302s Traceback: 302s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 302s from . import multiarray 302s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 302s from . import overrides 302s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 302s from numpy.core._multiarray_umath import ( 302s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 302s 302s During handling of the above exception, another exception occurred: 302s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 302s from numpy.__config__ import show as show_config 302s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 302s from numpy.core._multiarray_umath import ( 302s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 302s raise ImportError(msg) 302s E ImportError: 302s E 302s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 302s E 302s E Importing the numpy C-extensions failed. This error can happen for 302s E many reasons, often due to issues with your setup or how NumPy was 302s E installed. 302s E 302s E We have compiled some common reasons and troubleshooting tips at: 302s E 302s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 302s E 302s E Please note and check the following: 302s E 302s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 302s E * The NumPy version is: "1.26.4" 302s E 302s E and make sure that they are the versions you expect. 302s E Please carefully study the documentation linked above for further help. 302s E 302s E Original error was: No module named 'numpy.core._multiarray_umath' 302s 302s The above exception was the direct cause of the following exception: 302s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 302s return _bootstrap._gcd_import(name[level:], package, level) 302s testsuite/MDAnalysisTests/__init__.py:125: in 302s from MDAnalysisTests.util import ( 302s testsuite/MDAnalysisTests/util.py:41: in 302s from numpy.testing import assert_warns 302s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 302s raise ImportError(msg) from e 302s E ImportError: Error importing numpy: you should not try to import numpy from 302s E its source directory; please exit the numpy source tree, and relaunch 302s E your python interpreter from there. 302s __ ERROR collecting testsuite/MDAnalysisTests/core/test_updating_atomgroup.py __ 302s ImportError while importing test module '/tmp/autopkgtest.vhk5Bq/build.ka4/src/testsuite/MDAnalysisTests/core/test_updating_atomgroup.py'. 302s Hint: make sure your test modules/packages have valid Python names. 302s Traceback: 302s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 302s from . import multiarray 302s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 302s from . import overrides 302s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 302s from numpy.core._multiarray_umath import ( 302s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 302s 302s During handling of the above exception, another exception occurred: 302s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 302s from numpy.__config__ import show as show_config 302s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 302s from numpy.core._multiarray_umath import ( 302s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 302s raise ImportError(msg) 302s E ImportError: 302s E 302s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 302s E 302s E Importing the numpy C-extensions failed. This error can happen for 302s E many reasons, often due to issues with your setup or how NumPy was 302s E installed. 302s E 302s E We have compiled some common reasons and troubleshooting tips at: 302s E 302s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 302s E 302s E Please note and check the following: 302s E 302s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 302s E * The NumPy version is: "1.26.4" 302s E 302s E and make sure that they are the versions you expect. 302s E Please carefully study the documentation linked above for further help. 302s E 302s E Original error was: No module named 'numpy.core._multiarray_umath' 302s 302s The above exception was the direct cause of the following exception: 302s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 302s return _bootstrap._gcd_import(name[level:], package, level) 302s testsuite/MDAnalysisTests/__init__.py:125: in 302s from MDAnalysisTests.util import ( 302s testsuite/MDAnalysisTests/util.py:41: in 302s from numpy.testing import assert_warns 302s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 302s raise ImportError(msg) from e 302s E ImportError: Error importing numpy: you should not try to import numpy from 302s E its source directory; please exit the numpy source tree, and relaunch 302s E your python interpreter from there. 302s _________ ERROR collecting testsuite/MDAnalysisTests/core/test_wrap.py _________ 302s ImportError while importing test module '/tmp/autopkgtest.vhk5Bq/build.ka4/src/testsuite/MDAnalysisTests/core/test_wrap.py'. 302s Hint: make sure your test modules/packages have valid Python names. 302s Traceback: 302s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 302s from . import multiarray 302s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 302s from . import overrides 302s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 302s from numpy.core._multiarray_umath import ( 302s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 302s 302s During handling of the above exception, another exception occurred: 302s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 302s from numpy.__config__ import show as show_config 302s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 302s from numpy.core._multiarray_umath import ( 302s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 302s raise ImportError(msg) 302s E ImportError: 302s E 302s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 302s E 302s E Importing the numpy C-extensions failed. This error can happen for 302s E many reasons, often due to issues with your setup or how NumPy was 302s E installed. 302s E 302s E We have compiled some common reasons and troubleshooting tips at: 302s E 302s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 302s E 302s E Please note and check the following: 302s E 302s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 302s E * The NumPy version is: "1.26.4" 302s E 302s E and make sure that they are the versions you expect. 302s E Please carefully study the documentation linked above for further help. 302s E 302s E Original error was: No module named 'numpy.core._multiarray_umath' 302s 302s The above exception was the direct cause of the following exception: 302s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 302s return _bootstrap._gcd_import(name[level:], package, level) 302s testsuite/MDAnalysisTests/__init__.py:125: in 302s from MDAnalysisTests.util import ( 302s testsuite/MDAnalysisTests/util.py:41: in 302s from numpy.testing import assert_warns 302s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 302s raise ImportError(msg) from e 302s E ImportError: Error importing numpy: you should not try to import numpy from 302s E its source directory; please exit the numpy source tree, and relaunch 302s E your python interpreter from there. 302s ______ ERROR collecting testsuite/MDAnalysisTests/formats/test_libdcd.py _______ 302s ImportError while importing test module '/tmp/autopkgtest.vhk5Bq/build.ka4/src/testsuite/MDAnalysisTests/formats/test_libdcd.py'. 302s Hint: make sure your test modules/packages have valid Python names. 302s Traceback: 302s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 302s from . import multiarray 302s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 302s from . import overrides 302s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 302s from numpy.core._multiarray_umath import ( 302s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 302s 302s During handling of the above exception, another exception occurred: 302s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 302s from numpy.__config__ import show as show_config 302s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 302s from numpy.core._multiarray_umath import ( 302s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 302s raise ImportError(msg) 302s E ImportError: 302s E 302s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 302s E 302s E Importing the numpy C-extensions failed. This error can happen for 302s E many reasons, often due to issues with your setup or how NumPy was 302s E installed. 302s E 302s E We have compiled some common reasons and troubleshooting tips at: 302s E 302s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 302s E 302s E Please note and check the following: 302s E 302s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 302s E * The NumPy version is: "1.26.4" 302s E 302s E and make sure that they are the versions you expect. 302s E Please carefully study the documentation linked above for further help. 302s E 302s E Original error was: No module named 'numpy.core._multiarray_umath' 302s 302s The above exception was the direct cause of the following exception: 302s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 302s return _bootstrap._gcd_import(name[level:], package, level) 302s testsuite/MDAnalysisTests/__init__.py:125: in 302s from MDAnalysisTests.util import ( 302s testsuite/MDAnalysisTests/util.py:41: in 302s from numpy.testing import assert_warns 302s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 302s raise ImportError(msg) from e 302s E ImportError: Error importing numpy: you should not try to import numpy from 302s E its source directory; please exit the numpy source tree, and relaunch 302s E your python interpreter from there. 302s _____ ERROR collecting testsuite/MDAnalysisTests/formats/test_libmdaxdr.py _____ 302s ImportError while importing test module '/tmp/autopkgtest.vhk5Bq/build.ka4/src/testsuite/MDAnalysisTests/formats/test_libmdaxdr.py'. 302s Hint: make sure your test modules/packages have valid Python names. 302s Traceback: 302s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 302s from . import multiarray 302s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 302s from . import overrides 302s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 302s from numpy.core._multiarray_umath import ( 302s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 302s 302s During handling of the above exception, another exception occurred: 302s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 302s from numpy.__config__ import show as show_config 302s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 302s from numpy.core._multiarray_umath import ( 302s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 302s raise ImportError(msg) 302s E ImportError: 302s E 302s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 302s E 302s E Importing the numpy C-extensions failed. This error can happen for 302s E many reasons, often due to issues with your setup or how NumPy was 302s E installed. 302s E 302s E We have compiled some common reasons and troubleshooting tips at: 302s E 302s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 302s E 302s E Please note and check the following: 302s E 302s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 302s E * The NumPy version is: "1.26.4" 302s E 302s E and make sure that they are the versions you expect. 302s E Please carefully study the documentation linked above for further help. 302s E 302s E Original error was: No module named 'numpy.core._multiarray_umath' 302s 302s The above exception was the direct cause of the following exception: 302s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 302s return _bootstrap._gcd_import(name[level:], package, level) 302s testsuite/MDAnalysisTests/__init__.py:125: in 302s from MDAnalysisTests.util import ( 302s testsuite/MDAnalysisTests/util.py:41: in 302s from numpy.testing import assert_warns 302s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 302s raise ImportError(msg) from e 302s E ImportError: Error importing numpy: you should not try to import numpy from 302s E its source directory; please exit the numpy source tree, and relaunch 302s E your python interpreter from there. 302s _______ ERROR collecting testsuite/MDAnalysisTests/import/test_import.py _______ 302s ImportError while importing test module '/tmp/autopkgtest.vhk5Bq/build.ka4/src/testsuite/MDAnalysisTests/import/test_import.py'. 302s Hint: make sure your test modules/packages have valid Python names. 302s Traceback: 302s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 302s from . import multiarray 302s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 302s from . import overrides 302s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 302s from numpy.core._multiarray_umath import ( 302s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 302s 302s During handling of the above exception, another exception occurred: 302s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 302s from numpy.__config__ import show as show_config 302s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 302s from numpy.core._multiarray_umath import ( 302s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 302s raise ImportError(msg) 302s E ImportError: 302s E 302s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 302s E 302s E Importing the numpy C-extensions failed. This error can happen for 302s E many reasons, often due to issues with your setup or how NumPy was 302s E installed. 302s E 302s E We have compiled some common reasons and troubleshooting tips at: 302s E 302s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 302s E 302s E Please note and check the following: 302s E 302s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 302s E * The NumPy version is: "1.26.4" 302s E 302s E and make sure that they are the versions you expect. 302s E Please carefully study the documentation linked above for further help. 302s E 302s E Original error was: No module named 'numpy.core._multiarray_umath' 302s 302s The above exception was the direct cause of the following exception: 302s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 302s return _bootstrap._gcd_import(name[level:], package, level) 302s testsuite/MDAnalysisTests/__init__.py:125: in 302s from MDAnalysisTests.util import ( 302s testsuite/MDAnalysisTests/util.py:41: in 302s from numpy.testing import assert_warns 302s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 302s raise ImportError(msg) from e 302s E ImportError: Error importing numpy: you should not try to import numpy from 302s E its source directory; please exit the numpy source tree, and relaunch 302s E your python interpreter from there. 302s ________ ERROR collecting testsuite/MDAnalysisTests/lib/test_augment.py ________ 302s ImportError while importing test module '/tmp/autopkgtest.vhk5Bq/build.ka4/src/testsuite/MDAnalysisTests/lib/test_augment.py'. 302s Hint: make sure your test modules/packages have valid Python names. 302s Traceback: 302s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 302s from . import multiarray 302s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 302s from . import overrides 302s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 302s from numpy.core._multiarray_umath import ( 302s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 302s 302s During handling of the above exception, another exception occurred: 302s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 302s from numpy.__config__ import show as show_config 302s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 302s from numpy.core._multiarray_umath import ( 302s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 302s raise ImportError(msg) 302s E ImportError: 302s E 302s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 302s E 302s E Importing the numpy C-extensions failed. This error can happen for 302s E many reasons, often due to issues with your setup or how NumPy was 302s E installed. 302s E 302s E We have compiled some common reasons and troubleshooting tips at: 302s E 302s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 302s E 302s E Please note and check the following: 302s E 302s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 302s E * The NumPy version is: "1.26.4" 302s E 302s E and make sure that they are the versions you expect. 302s E Please carefully study the documentation linked above for further help. 302s E 302s E Original error was: No module named 'numpy.core._multiarray_umath' 302s 302s The above exception was the direct cause of the following exception: 302s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 302s return _bootstrap._gcd_import(name[level:], package, level) 302s testsuite/MDAnalysisTests/__init__.py:125: in 302s from MDAnalysisTests.util import ( 302s testsuite/MDAnalysisTests/util.py:41: in 302s from numpy.testing import assert_warns 302s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 302s raise ImportError(msg) from e 302s E ImportError: Error importing numpy: you should not try to import numpy from 302s E its source directory; please exit the numpy source tree, and relaunch 302s E your python interpreter from there. 302s _________ ERROR collecting testsuite/MDAnalysisTests/lib/test_cutil.py _________ 302s ImportError while importing test module '/tmp/autopkgtest.vhk5Bq/build.ka4/src/testsuite/MDAnalysisTests/lib/test_cutil.py'. 302s Hint: make sure your test modules/packages have valid Python names. 302s Traceback: 302s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 302s from . import multiarray 302s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 302s from . import overrides 302s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 302s from numpy.core._multiarray_umath import ( 302s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 302s 302s During handling of the above exception, another exception occurred: 302s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 302s from numpy.__config__ import show as show_config 302s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 302s from numpy.core._multiarray_umath import ( 302s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 302s raise ImportError(msg) 302s E ImportError: 302s E 302s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 302s E 302s E Importing the numpy C-extensions failed. This error can happen for 302s E many reasons, often due to issues with your setup or how NumPy was 302s E installed. 302s E 302s E We have compiled some common reasons and troubleshooting tips at: 302s E 302s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 302s E 302s E Please note and check the following: 302s E 302s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 302s E * The NumPy version is: "1.26.4" 302s E 302s E and make sure that they are the versions you expect. 302s E Please carefully study the documentation linked above for further help. 302s E 302s E Original error was: No module named 'numpy.core._multiarray_umath' 302s 302s The above exception was the direct cause of the following exception: 302s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 302s return _bootstrap._gcd_import(name[level:], package, level) 302s testsuite/MDAnalysisTests/__init__.py:125: in 302s from MDAnalysisTests.util import ( 302s testsuite/MDAnalysisTests/util.py:41: in 302s from numpy.testing import assert_warns 302s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 302s raise ImportError(msg) from e 302s E ImportError: Error importing numpy: you should not try to import numpy from 302s E its source directory; please exit the numpy source tree, and relaunch 302s E your python interpreter from there. 302s _______ ERROR collecting testsuite/MDAnalysisTests/lib/test_distances.py _______ 302s ImportError while importing test module '/tmp/autopkgtest.vhk5Bq/build.ka4/src/testsuite/MDAnalysisTests/lib/test_distances.py'. 302s Hint: make sure your test modules/packages have valid Python names. 302s Traceback: 302s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 302s from . import multiarray 302s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 302s from . import overrides 302s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 302s from numpy.core._multiarray_umath import ( 302s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 302s 302s During handling of the above exception, another exception occurred: 302s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 302s from numpy.__config__ import show as show_config 302s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 302s from numpy.core._multiarray_umath import ( 302s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 302s raise ImportError(msg) 302s E ImportError: 302s E 302s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 302s E 302s E Importing the numpy C-extensions failed. This error can happen for 302s E many reasons, often due to issues with your setup or how NumPy was 302s E installed. 302s E 302s E We have compiled some common reasons and troubleshooting tips at: 302s E 302s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 302s E 302s E Please note and check the following: 302s E 302s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 302s E * The NumPy version is: "1.26.4" 302s E 302s E and make sure that they are the versions you expect. 302s E Please carefully study the documentation linked above for further help. 302s E 302s E Original error was: No module named 'numpy.core._multiarray_umath' 302s 302s The above exception was the direct cause of the following exception: 302s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 302s return _bootstrap._gcd_import(name[level:], package, level) 302s testsuite/MDAnalysisTests/__init__.py:125: in 302s from MDAnalysisTests.util import ( 302s testsuite/MDAnalysisTests/util.py:41: in 302s from numpy.testing import assert_warns 302s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 302s raise ImportError(msg) from e 302s E ImportError: Error importing numpy: you should not try to import numpy from 302s E its source directory; please exit the numpy source tree, and relaunch 302s E your python interpreter from there. 302s __________ ERROR collecting testsuite/MDAnalysisTests/lib/test_log.py __________ 302s ImportError while importing test module '/tmp/autopkgtest.vhk5Bq/build.ka4/src/testsuite/MDAnalysisTests/lib/test_log.py'. 302s Hint: make sure your test modules/packages have valid Python names. 302s Traceback: 302s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 302s from . import multiarray 302s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 302s from . import overrides 302s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 302s from numpy.core._multiarray_umath import ( 302s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 302s 302s During handling of the above exception, another exception occurred: 302s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 302s from numpy.__config__ import show as show_config 302s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 302s from numpy.core._multiarray_umath import ( 302s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 302s raise ImportError(msg) 302s E ImportError: 302s E 302s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 302s E 302s E Importing the numpy C-extensions failed. This error can happen for 302s E many reasons, often due to issues with your setup or how NumPy was 302s E installed. 302s E 302s E We have compiled some common reasons and troubleshooting tips at: 302s E 302s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 302s E 302s E Please note and check the following: 302s E 302s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 302s E * The NumPy version is: "1.26.4" 302s E 302s E and make sure that they are the versions you expect. 302s E Please carefully study the documentation linked above for further help. 302s E 302s E Original error was: No module named 'numpy.core._multiarray_umath' 302s 302s The above exception was the direct cause of the following exception: 302s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 302s return _bootstrap._gcd_import(name[level:], package, level) 302s testsuite/MDAnalysisTests/__init__.py:125: in 302s from MDAnalysisTests.util import ( 302s testsuite/MDAnalysisTests/util.py:41: in 302s from numpy.testing import assert_warns 302s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 302s raise ImportError(msg) from e 302s E ImportError: Error importing numpy: you should not try to import numpy from 302s E its source directory; please exit the numpy source tree, and relaunch 302s E your python interpreter from there. 302s ____ ERROR collecting testsuite/MDAnalysisTests/lib/test_neighborsearch.py _____ 302s ImportError while importing test module '/tmp/autopkgtest.vhk5Bq/build.ka4/src/testsuite/MDAnalysisTests/lib/test_neighborsearch.py'. 302s Hint: make sure your test modules/packages have valid Python names. 302s Traceback: 302s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 302s from . import multiarray 302s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 302s from . import overrides 302s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 302s from numpy.core._multiarray_umath import ( 302s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 302s 302s During handling of the above exception, another exception occurred: 302s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 302s from numpy.__config__ import show as show_config 302s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 302s from numpy.core._multiarray_umath import ( 302s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 302s raise ImportError(msg) 302s E ImportError: 302s E 302s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 302s E 302s E Importing the numpy C-extensions failed. This error can happen for 302s E many reasons, often due to issues with your setup or how NumPy was 302s E installed. 302s E 302s E We have compiled some common reasons and troubleshooting tips at: 302s E 302s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 302s E 302s E Please note and check the following: 302s E 302s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 302s E * The NumPy version is: "1.26.4" 302s E 302s E and make sure that they are the versions you expect. 302s E Please carefully study the documentation linked above for further help. 302s E 302s E Original error was: No module named 'numpy.core._multiarray_umath' 302s 302s The above exception was the direct cause of the following exception: 302s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 302s return _bootstrap._gcd_import(name[level:], package, level) 302s testsuite/MDAnalysisTests/__init__.py:125: in 302s from MDAnalysisTests.util import ( 302s testsuite/MDAnalysisTests/util.py:41: in 302s from numpy.testing import assert_warns 302s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 302s raise ImportError(msg) from e 302s E ImportError: Error importing numpy: you should not try to import numpy from 302s E its source directory; please exit the numpy source tree, and relaunch 302s E your python interpreter from there. 302s ________ ERROR collecting testsuite/MDAnalysisTests/lib/test_nsgrid.py _________ 302s ImportError while importing test module '/tmp/autopkgtest.vhk5Bq/build.ka4/src/testsuite/MDAnalysisTests/lib/test_nsgrid.py'. 302s Hint: make sure your test modules/packages have valid Python names. 302s Traceback: 302s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 302s from . import multiarray 302s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 302s from . import overrides 302s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 302s from numpy.core._multiarray_umath import ( 302s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 302s 302s During handling of the above exception, another exception occurred: 302s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 302s from numpy.__config__ import show as show_config 302s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 302s from numpy.core._multiarray_umath import ( 302s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 302s raise ImportError(msg) 302s E ImportError: 302s E 302s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 302s E 302s E Importing the numpy C-extensions failed. This error can happen for 302s E many reasons, often due to issues with your setup or how NumPy was 302s E installed. 302s E 302s E We have compiled some common reasons and troubleshooting tips at: 302s E 302s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 302s E 302s E Please note and check the following: 302s E 302s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 302s E * The NumPy version is: "1.26.4" 302s E 302s E and make sure that they are the versions you expect. 302s E Please carefully study the documentation linked above for further help. 302s E 302s E Original error was: No module named 'numpy.core._multiarray_umath' 302s 302s The above exception was the direct cause of the following exception: 302s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 302s return _bootstrap._gcd_import(name[level:], package, level) 302s testsuite/MDAnalysisTests/__init__.py:125: in 302s from MDAnalysisTests.util import ( 302s testsuite/MDAnalysisTests/util.py:41: in 302s from numpy.testing import assert_warns 302s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 302s raise ImportError(msg) from e 302s E ImportError: Error importing numpy: you should not try to import numpy from 302s E its source directory; please exit the numpy source tree, and relaunch 302s E your python interpreter from there. 302s ________ ERROR collecting testsuite/MDAnalysisTests/lib/test_pkdtree.py ________ 302s ImportError while importing test module '/tmp/autopkgtest.vhk5Bq/build.ka4/src/testsuite/MDAnalysisTests/lib/test_pkdtree.py'. 302s Hint: make sure your test modules/packages have valid Python names. 302s Traceback: 302s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 302s from . import multiarray 302s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 302s from . import overrides 302s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 302s from numpy.core._multiarray_umath import ( 302s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 302s 302s During handling of the above exception, another exception occurred: 302s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 302s from numpy.__config__ import show as show_config 302s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 302s from numpy.core._multiarray_umath import ( 302s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 302s raise ImportError(msg) 302s E ImportError: 302s E 302s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 302s E 302s E Importing the numpy C-extensions failed. This error can happen for 302s E many reasons, often due to issues with your setup or how NumPy was 302s E installed. 302s E 302s E We have compiled some common reasons and troubleshooting tips at: 302s E 302s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 302s E 302s E Please note and check the following: 302s E 302s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 302s E * The NumPy version is: "1.26.4" 302s E 302s E and make sure that they are the versions you expect. 302s E Please carefully study the documentation linked above for further help. 302s E 302s E Original error was: No module named 'numpy.core._multiarray_umath' 302s 302s The above exception was the direct cause of the following exception: 302s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 302s return _bootstrap._gcd_import(name[level:], package, level) 302s testsuite/MDAnalysisTests/__init__.py:125: in 302s from MDAnalysisTests.util import ( 302s testsuite/MDAnalysisTests/util.py:41: in 302s from numpy.testing import assert_warns 302s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 302s raise ImportError(msg) from e 302s E ImportError: Error importing numpy: you should not try to import numpy from 302s E its source directory; please exit the numpy source tree, and relaunch 302s E your python interpreter from there. 302s ________ ERROR collecting testsuite/MDAnalysisTests/lib/test_qcprot.py _________ 302s ImportError while importing test module '/tmp/autopkgtest.vhk5Bq/build.ka4/src/testsuite/MDAnalysisTests/lib/test_qcprot.py'. 302s Hint: make sure your test modules/packages have valid Python names. 302s Traceback: 302s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 302s from . import multiarray 302s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 302s from . import overrides 302s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 302s from numpy.core._multiarray_umath import ( 302s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 302s 302s During handling of the above exception, another exception occurred: 302s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 302s from numpy.__config__ import show as show_config 302s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 302s from numpy.core._multiarray_umath import ( 302s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 302s raise ImportError(msg) 302s E ImportError: 302s E 302s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 302s E 302s E Importing the numpy C-extensions failed. This error can happen for 302s E many reasons, often due to issues with your setup or how NumPy was 302s E installed. 302s E 302s E We have compiled some common reasons and troubleshooting tips at: 302s E 302s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 302s E 302s E Please note and check the following: 302s E 302s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 302s E * The NumPy version is: "1.26.4" 302s E 302s E and make sure that they are the versions you expect. 302s E Please carefully study the documentation linked above for further help. 302s E 302s E Original error was: No module named 'numpy.core._multiarray_umath' 302s 302s The above exception was the direct cause of the following exception: 302s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 302s return _bootstrap._gcd_import(name[level:], package, level) 302s testsuite/MDAnalysisTests/__init__.py:125: in 302s from MDAnalysisTests.util import ( 302s testsuite/MDAnalysisTests/util.py:41: in 302s from numpy.testing import assert_warns 302s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 302s raise ImportError(msg) from e 302s E ImportError: Error importing numpy: you should not try to import numpy from 302s E its source directory; please exit the numpy source tree, and relaunch 302s E your python interpreter from there. 302s _________ ERROR collecting testsuite/MDAnalysisTests/lib/test_util.py __________ 302s ImportError while importing test module '/tmp/autopkgtest.vhk5Bq/build.ka4/src/testsuite/MDAnalysisTests/lib/test_util.py'. 302s Hint: make sure your test modules/packages have valid Python names. 302s Traceback: 302s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 302s from . import multiarray 302s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 302s from . import overrides 302s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 302s from numpy.core._multiarray_umath import ( 302s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 302s 302s During handling of the above exception, another exception occurred: 302s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 302s from numpy.__config__ import show as show_config 302s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 302s from numpy.core._multiarray_umath import ( 302s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 302s raise ImportError(msg) 302s E ImportError: 302s E 302s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 302s E 302s E Importing the numpy C-extensions failed. This error can happen for 302s E many reasons, often due to issues with your setup or how NumPy was 302s E installed. 302s E 302s E We have compiled some common reasons and troubleshooting tips at: 302s E 302s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 302s E 302s E Please note and check the following: 302s E 302s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 302s E * The NumPy version is: "1.26.4" 302s E 302s E and make sure that they are the versions you expect. 302s E Please carefully study the documentation linked above for further help. 302s E 302s E Original error was: No module named 'numpy.core._multiarray_umath' 302s 302s The above exception was the direct cause of the following exception: 302s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 302s return _bootstrap._gcd_import(name[level:], package, level) 302s testsuite/MDAnalysisTests/__init__.py:125: in 302s from MDAnalysisTests.util import ( 302s testsuite/MDAnalysisTests/util.py:41: in 302s from numpy.testing import assert_warns 302s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 302s raise ImportError(msg) from e 302s E ImportError: Error importing numpy: you should not try to import numpy from 302s E its source directory; please exit the numpy source tree, and relaunch 302s E your python interpreter from there. 302s _ ERROR collecting testsuite/MDAnalysisTests/parallelism/test_multiprocessing.py _ 302s ImportError while importing test module '/tmp/autopkgtest.vhk5Bq/build.ka4/src/testsuite/MDAnalysisTests/parallelism/test_multiprocessing.py'. 302s Hint: make sure your test modules/packages have valid Python names. 302s Traceback: 302s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 302s from . import multiarray 302s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 302s from . import overrides 302s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 302s from numpy.core._multiarray_umath import ( 302s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 302s 302s During handling of the above exception, another exception occurred: 302s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 302s from numpy.__config__ import show as show_config 302s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 302s from numpy.core._multiarray_umath import ( 302s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 302s raise ImportError(msg) 302s E ImportError: 302s E 302s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 302s E 302s E Importing the numpy C-extensions failed. This error can happen for 302s E many reasons, often due to issues with your setup or how NumPy was 302s E installed. 302s E 302s E We have compiled some common reasons and troubleshooting tips at: 302s E 302s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 302s E 302s E Please note and check the following: 302s E 302s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 302s E * The NumPy version is: "1.26.4" 302s E 302s E and make sure that they are the versions you expect. 302s E Please carefully study the documentation linked above for further help. 302s E 302s E Original error was: No module named 'numpy.core._multiarray_umath' 302s 302s The above exception was the direct cause of the following exception: 302s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 302s return _bootstrap._gcd_import(name[level:], package, level) 302s testsuite/MDAnalysisTests/parallelism/test_multiprocessing.py:25: in 302s import numpy as np 302s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 302s raise ImportError(msg) from e 302s E ImportError: Error importing numpy: you should not try to import numpy from 302s E its source directory; please exit the numpy source tree, and relaunch 302s E your python interpreter from there. 302s _ ERROR collecting testsuite/MDAnalysisTests/parallelism/test_pickle_transformation.py _ 302s ImportError while importing test module '/tmp/autopkgtest.vhk5Bq/build.ka4/src/testsuite/MDAnalysisTests/parallelism/test_pickle_transformation.py'. 302s Hint: make sure your test modules/packages have valid Python names. 302s Traceback: 302s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 302s from . import multiarray 302s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 302s from . import overrides 302s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 302s from numpy.core._multiarray_umath import ( 302s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 302s 302s During handling of the above exception, another exception occurred: 302s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 302s from numpy.__config__ import show as show_config 302s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 302s from numpy.core._multiarray_umath import ( 302s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 302s raise ImportError(msg) 302s E ImportError: 302s E 302s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 302s E 302s E Importing the numpy C-extensions failed. This error can happen for 302s E many reasons, often due to issues with your setup or how NumPy was 302s E installed. 302s E 302s E We have compiled some common reasons and troubleshooting tips at: 302s E 302s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 302s E 302s E Please note and check the following: 302s E 302s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 302s E * The NumPy version is: "1.26.4" 302s E 302s E and make sure that they are the versions you expect. 302s E Please carefully study the documentation linked above for further help. 302s E 302s E Original error was: No module named 'numpy.core._multiarray_umath' 302s 302s The above exception was the direct cause of the following exception: 302s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 302s return _bootstrap._gcd_import(name[level:], package, level) 302s testsuite/MDAnalysisTests/parallelism/test_pickle_transformation.py:25: in 302s from numpy.testing import assert_almost_equal 302s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 302s raise ImportError(msg) from e 302s E ImportError: Error importing numpy: you should not try to import numpy from 302s E its source directory; please exit the numpy source tree, and relaunch 302s E your python interpreter from there. 302s ____________ ERROR collecting testsuite/MDAnalysisTests/test_api.py ____________ 302s ImportError while importing test module '/tmp/autopkgtest.vhk5Bq/build.ka4/src/testsuite/MDAnalysisTests/test_api.py'. 302s Hint: make sure your test modules/packages have valid Python names. 302s Traceback: 302s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 302s from . import multiarray 302s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 302s from . import overrides 302s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 302s from numpy.core._multiarray_umath import ( 302s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 302s 302s During handling of the above exception, another exception occurred: 302s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 302s from numpy.__config__ import show as show_config 302s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 302s from numpy.core._multiarray_umath import ( 302s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 302s raise ImportError(msg) 302s E ImportError: 302s E 302s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 302s E 302s E Importing the numpy C-extensions failed. This error can happen for 302s E many reasons, often due to issues with your setup or how NumPy was 302s E installed. 302s E 302s E We have compiled some common reasons and troubleshooting tips at: 302s E 302s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 302s E 302s E Please note and check the following: 302s E 302s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 302s E * The NumPy version is: "1.26.4" 302s E 302s E and make sure that they are the versions you expect. 302s E Please carefully study the documentation linked above for further help. 302s E 302s E Original error was: No module named 'numpy.core._multiarray_umath' 302s 302s The above exception was the direct cause of the following exception: 302s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 302s return _bootstrap._gcd_import(name[level:], package, level) 302s testsuite/MDAnalysisTests/__init__.py:125: in 302s from MDAnalysisTests.util import ( 302s testsuite/MDAnalysisTests/util.py:41: in 302s from numpy.testing import assert_warns 302s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 302s raise ImportError(msg) from e 302s E ImportError: Error importing numpy: you should not try to import numpy from 302s E its source directory; please exit the numpy source tree, and relaunch 302s E your python interpreter from there. 302s ______ ERROR collecting testsuite/MDAnalysisTests/topology/test_altloc.py ______ 302s ImportError while importing test module '/tmp/autopkgtest.vhk5Bq/build.ka4/src/testsuite/MDAnalysisTests/topology/test_altloc.py'. 302s Hint: make sure your test modules/packages have valid Python names. 302s Traceback: 302s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 302s from . import multiarray 302s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 302s from . import overrides 302s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 302s from numpy.core._multiarray_umath import ( 302s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 302s 302s During handling of the above exception, another exception occurred: 302s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 302s from numpy.__config__ import show as show_config 302s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 302s from numpy.core._multiarray_umath import ( 302s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 302s raise ImportError(msg) 302s E ImportError: 302s E 302s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 302s E 302s E Importing the numpy C-extensions failed. This error can happen for 302s E many reasons, often due to issues with your setup or how NumPy was 302s E installed. 302s E 302s E We have compiled some common reasons and troubleshooting tips at: 302s E 302s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 302s E 302s E Please note and check the following: 302s E 302s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 302s E * The NumPy version is: "1.26.4" 302s E 302s E and make sure that they are the versions you expect. 302s E Please carefully study the documentation linked above for further help. 302s E 302s E Original error was: No module named 'numpy.core._multiarray_umath' 302s 302s The above exception was the direct cause of the following exception: 302s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 302s return _bootstrap._gcd_import(name[level:], package, level) 302s testsuite/MDAnalysisTests/__init__.py:125: in 302s from MDAnalysisTests.util import ( 302s testsuite/MDAnalysisTests/util.py:41: in 302s from numpy.testing import assert_warns 302s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 302s raise ImportError(msg) from e 302s E ImportError: Error importing numpy: you should not try to import numpy from 302s E its source directory; please exit the numpy source tree, and relaunch 302s E your python interpreter from there. 302s _______ ERROR collecting testsuite/MDAnalysisTests/topology/test_crd.py ________ 302s ImportError while importing test module '/tmp/autopkgtest.vhk5Bq/build.ka4/src/testsuite/MDAnalysisTests/topology/test_crd.py'. 302s Hint: make sure your test modules/packages have valid Python names. 302s Traceback: 302s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 302s from . import multiarray 302s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 302s from . import overrides 302s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 302s from numpy.core._multiarray_umath import ( 302s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 302s 302s During handling of the above exception, another exception occurred: 302s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 302s from numpy.__config__ import show as show_config 302s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 302s from numpy.core._multiarray_umath import ( 302s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 302s raise ImportError(msg) 302s E ImportError: 302s E 302s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 302s E 302s E Importing the numpy C-extensions failed. This error can happen for 302s E many reasons, often due to issues with your setup or how NumPy was 302s E installed. 302s E 302s E We have compiled some common reasons and troubleshooting tips at: 302s E 302s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 302s E 302s E Please note and check the following: 302s E 302s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 302s E * The NumPy version is: "1.26.4" 302s E 302s E and make sure that they are the versions you expect. 302s E Please carefully study the documentation linked above for further help. 302s E 302s E Original error was: No module named 'numpy.core._multiarray_umath' 302s 302s The above exception was the direct cause of the following exception: 302s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 302s return _bootstrap._gcd_import(name[level:], package, level) 302s testsuite/MDAnalysisTests/__init__.py:125: in 302s from MDAnalysisTests.util import ( 302s testsuite/MDAnalysisTests/util.py:41: in 302s from numpy.testing import assert_warns 302s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 302s raise ImportError(msg) from e 302s E ImportError: Error importing numpy: you should not try to import numpy from 302s E its source directory; please exit the numpy source tree, and relaunch 302s E your python interpreter from there. 302s ______ ERROR collecting testsuite/MDAnalysisTests/topology/test_dlpoly.py ______ 302s ImportError while importing test module '/tmp/autopkgtest.vhk5Bq/build.ka4/src/testsuite/MDAnalysisTests/topology/test_dlpoly.py'. 302s Hint: make sure your test modules/packages have valid Python names. 302s Traceback: 302s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 302s from . import multiarray 302s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 302s from . import overrides 302s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 302s from numpy.core._multiarray_umath import ( 302s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 302s 302s During handling of the above exception, another exception occurred: 302s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 302s from numpy.__config__ import show as show_config 302s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 302s from numpy.core._multiarray_umath import ( 302s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 302s raise ImportError(msg) 302s E ImportError: 302s E 302s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 302s E 302s E Importing the numpy C-extensions failed. This error can happen for 302s E many reasons, often due to issues with your setup or how NumPy was 302s E installed. 302s E 302s E We have compiled some common reasons and troubleshooting tips at: 302s E 302s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 302s E 302s E Please note and check the following: 302s E 302s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 302s E * The NumPy version is: "1.26.4" 302s E 302s E and make sure that they are the versions you expect. 302s E Please carefully study the documentation linked above for further help. 302s E 302s E Original error was: No module named 'numpy.core._multiarray_umath' 302s 302s The above exception was the direct cause of the following exception: 302s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 302s return _bootstrap._gcd_import(name[level:], package, level) 302s testsuite/MDAnalysisTests/__init__.py:125: in 302s from MDAnalysisTests.util import ( 302s testsuite/MDAnalysisTests/util.py:41: in 302s from numpy.testing import assert_warns 302s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 302s raise ImportError(msg) from e 302s E ImportError: Error importing numpy: you should not try to import numpy from 302s E its source directory; please exit the numpy source tree, and relaunch 302s E your python interpreter from there. 302s _______ ERROR collecting testsuite/MDAnalysisTests/topology/test_dms.py ________ 302s ImportError while importing test module '/tmp/autopkgtest.vhk5Bq/build.ka4/src/testsuite/MDAnalysisTests/topology/test_dms.py'. 302s Hint: make sure your test modules/packages have valid Python names. 302s Traceback: 302s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 302s from . import multiarray 302s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 302s from . import overrides 302s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 302s from numpy.core._multiarray_umath import ( 302s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 302s 302s During handling of the above exception, another exception occurred: 302s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 302s from numpy.__config__ import show as show_config 302s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 302s from numpy.core._multiarray_umath import ( 302s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 302s raise ImportError(msg) 302s E ImportError: 302s E 302s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 302s E 302s E Importing the numpy C-extensions failed. This error can happen for 302s E many reasons, often due to issues with your setup or how NumPy was 302s E installed. 302s E 302s E We have compiled some common reasons and troubleshooting tips at: 302s E 302s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 302s E 302s E Please note and check the following: 302s E 302s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 302s E * The NumPy version is: "1.26.4" 302s E 302s E and make sure that they are the versions you expect. 302s E Please carefully study the documentation linked above for further help. 302s E 302s E Original error was: No module named 'numpy.core._multiarray_umath' 302s 302s The above exception was the direct cause of the following exception: 302s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 302s return _bootstrap._gcd_import(name[level:], package, level) 302s testsuite/MDAnalysisTests/__init__.py:125: in 302s from MDAnalysisTests.util import ( 302s testsuite/MDAnalysisTests/util.py:41: in 302s from numpy.testing import assert_warns 302s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 302s raise ImportError(msg) from e 302s E ImportError: Error importing numpy: you should not try to import numpy from 302s E its source directory; please exit the numpy source tree, and relaunch 302s E your python interpreter from there. 302s _____ ERROR collecting testsuite/MDAnalysisTests/topology/test_fhiaims.py ______ 302s ImportError while importing test module '/tmp/autopkgtest.vhk5Bq/build.ka4/src/testsuite/MDAnalysisTests/topology/test_fhiaims.py'. 302s Hint: make sure your test modules/packages have valid Python names. 302s Traceback: 302s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 302s from . import multiarray 302s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 302s from . import overrides 302s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 302s from numpy.core._multiarray_umath import ( 302s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 302s 302s During handling of the above exception, another exception occurred: 302s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 302s from numpy.__config__ import show as show_config 302s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 302s from numpy.core._multiarray_umath import ( 302s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 302s raise ImportError(msg) 302s E ImportError: 302s E 302s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 302s E 302s E Importing the numpy C-extensions failed. This error can happen for 302s E many reasons, often due to issues with your setup or how NumPy was 302s E installed. 302s E 302s E We have compiled some common reasons and troubleshooting tips at: 302s E 302s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 302s E 302s E Please note and check the following: 302s E 302s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 302s E * The NumPy version is: "1.26.4" 302s E 302s E and make sure that they are the versions you expect. 302s E Please carefully study the documentation linked above for further help. 302s E 302s E Original error was: No module named 'numpy.core._multiarray_umath' 302s 302s The above exception was the direct cause of the following exception: 302s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 302s return _bootstrap._gcd_import(name[level:], package, level) 302s testsuite/MDAnalysisTests/__init__.py:125: in 302s from MDAnalysisTests.util import ( 302s testsuite/MDAnalysisTests/util.py:41: in 302s from numpy.testing import assert_warns 302s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 302s raise ImportError(msg) from e 302s E ImportError: Error importing numpy: you should not try to import numpy from 302s E its source directory; please exit the numpy source tree, and relaunch 302s E your python interpreter from there. 302s _______ ERROR collecting testsuite/MDAnalysisTests/topology/test_gms.py ________ 302s ImportError while importing test module '/tmp/autopkgtest.vhk5Bq/build.ka4/src/testsuite/MDAnalysisTests/topology/test_gms.py'. 302s Hint: make sure your test modules/packages have valid Python names. 302s Traceback: 302s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 302s from . import multiarray 302s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 302s from . import overrides 302s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 302s from numpy.core._multiarray_umath import ( 302s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 302s 302s During handling of the above exception, another exception occurred: 302s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 302s from numpy.__config__ import show as show_config 302s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 302s from numpy.core._multiarray_umath import ( 302s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 302s raise ImportError(msg) 302s E ImportError: 302s E 302s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 302s E 302s E Importing the numpy C-extensions failed. This error can happen for 302s E many reasons, often due to issues with your setup or how NumPy was 302s E installed. 302s E 302s E We have compiled some common reasons and troubleshooting tips at: 302s E 302s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 302s E 302s E Please note and check the following: 302s E 302s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 302s E * The NumPy version is: "1.26.4" 302s E 302s E and make sure that they are the versions you expect. 302s E Please carefully study the documentation linked above for further help. 302s E 302s E Original error was: No module named 'numpy.core._multiarray_umath' 302s 302s The above exception was the direct cause of the following exception: 302s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 302s return _bootstrap._gcd_import(name[level:], package, level) 302s testsuite/MDAnalysisTests/__init__.py:125: in 302s from MDAnalysisTests.util import ( 302s testsuite/MDAnalysisTests/util.py:41: in 302s from numpy.testing import assert_warns 302s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 302s raise ImportError(msg) from e 302s E ImportError: Error importing numpy: you should not try to import numpy from 302s E its source directory; please exit the numpy source tree, and relaunch 302s E your python interpreter from there. 302s _______ ERROR collecting testsuite/MDAnalysisTests/topology/test_gro.py ________ 302s ImportError while importing test module '/tmp/autopkgtest.vhk5Bq/build.ka4/src/testsuite/MDAnalysisTests/topology/test_gro.py'. 302s Hint: make sure your test modules/packages have valid Python names. 302s Traceback: 302s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 302s from . import multiarray 302s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 302s from . import overrides 302s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 302s from numpy.core._multiarray_umath import ( 302s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 302s 302s During handling of the above exception, another exception occurred: 302s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 302s from numpy.__config__ import show as show_config 302s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 302s from numpy.core._multiarray_umath import ( 302s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 302s raise ImportError(msg) 302s E ImportError: 302s E 302s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 302s E 302s E Importing the numpy C-extensions failed. This error can happen for 302s E many reasons, often due to issues with your setup or how NumPy was 302s E installed. 302s E 302s E We have compiled some common reasons and troubleshooting tips at: 302s E 302s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 302s E 302s E Please note and check the following: 302s E 302s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 302s E * The NumPy version is: "1.26.4" 302s E 302s E and make sure that they are the versions you expect. 302s E Please carefully study the documentation linked above for further help. 302s E 302s E Original error was: No module named 'numpy.core._multiarray_umath' 302s 302s The above exception was the direct cause of the following exception: 302s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 302s return _bootstrap._gcd_import(name[level:], package, level) 302s testsuite/MDAnalysisTests/__init__.py:125: in 302s from MDAnalysisTests.util import ( 302s testsuite/MDAnalysisTests/util.py:41: in 302s from numpy.testing import assert_warns 302s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 302s raise ImportError(msg) from e 302s E ImportError: Error importing numpy: you should not try to import numpy from 302s E its source directory; please exit the numpy source tree, and relaunch 302s E your python interpreter from there. 302s _______ ERROR collecting testsuite/MDAnalysisTests/topology/test_gsd.py ________ 302s ImportError while importing test module '/tmp/autopkgtest.vhk5Bq/build.ka4/src/testsuite/MDAnalysisTests/topology/test_gsd.py'. 302s Hint: make sure your test modules/packages have valid Python names. 302s Traceback: 302s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 302s from . import multiarray 302s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 302s from . import overrides 302s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 302s from numpy.core._multiarray_umath import ( 302s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 302s 302s During handling of the above exception, another exception occurred: 302s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 302s from numpy.__config__ import show as show_config 302s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 302s from numpy.core._multiarray_umath import ( 302s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 302s raise ImportError(msg) 302s E ImportError: 302s E 302s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 302s E 302s E Importing the numpy C-extensions failed. This error can happen for 302s E many reasons, often due to issues with your setup or how NumPy was 302s E installed. 302s E 302s E We have compiled some common reasons and troubleshooting tips at: 302s E 302s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 302s E 302s E Please note and check the following: 302s E 302s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 302s E * The NumPy version is: "1.26.4" 302s E 302s E and make sure that they are the versions you expect. 302s E Please carefully study the documentation linked above for further help. 302s E 302s E Original error was: No module named 'numpy.core._multiarray_umath' 302s 302s The above exception was the direct cause of the following exception: 302s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 302s return _bootstrap._gcd_import(name[level:], package, level) 302s testsuite/MDAnalysisTests/__init__.py:125: in 302s from MDAnalysisTests.util import ( 302s testsuite/MDAnalysisTests/util.py:41: in 302s from numpy.testing import assert_warns 302s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 302s raise ImportError(msg) from e 302s E ImportError: Error importing numpy: you should not try to import numpy from 302s E its source directory; please exit the numpy source tree, and relaunch 302s E your python interpreter from there. 302s _____ ERROR collecting testsuite/MDAnalysisTests/topology/test_guessers.py _____ 302s ImportError while importing test module '/tmp/autopkgtest.vhk5Bq/build.ka4/src/testsuite/MDAnalysisTests/topology/test_guessers.py'. 302s Hint: make sure your test modules/packages have valid Python names. 302s Traceback: 302s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 302s from . import multiarray 302s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 302s from . import overrides 302s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 302s from numpy.core._multiarray_umath import ( 302s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 302s 302s During handling of the above exception, another exception occurred: 302s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 302s from numpy.__config__ import show as show_config 302s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 302s from numpy.core._multiarray_umath import ( 302s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 302s raise ImportError(msg) 302s E ImportError: 302s E 302s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 302s E 302s E Importing the numpy C-extensions failed. This error can happen for 302s E many reasons, often due to issues with your setup or how NumPy was 302s E installed. 302s E 302s E We have compiled some common reasons and troubleshooting tips at: 302s E 302s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 302s E 302s E Please note and check the following: 302s E 302s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 302s E * The NumPy version is: "1.26.4" 302s E 302s E and make sure that they are the versions you expect. 302s E Please carefully study the documentation linked above for further help. 302s E 302s E Original error was: No module named 'numpy.core._multiarray_umath' 302s 302s The above exception was the direct cause of the following exception: 302s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 302s return _bootstrap._gcd_import(name[level:], package, level) 302s testsuite/MDAnalysisTests/__init__.py:125: in 302s from MDAnalysisTests.util import ( 302s testsuite/MDAnalysisTests/util.py:41: in 302s from numpy.testing import assert_warns 302s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 302s raise ImportError(msg) from e 302s E ImportError: Error importing numpy: you should not try to import numpy from 302s E its source directory; please exit the numpy source tree, and relaunch 302s E your python interpreter from there. 302s _____ ERROR collecting testsuite/MDAnalysisTests/topology/test_hoomdxml.py _____ 302s ImportError while importing test module '/tmp/autopkgtest.vhk5Bq/build.ka4/src/testsuite/MDAnalysisTests/topology/test_hoomdxml.py'. 302s Hint: make sure your test modules/packages have valid Python names. 302s Traceback: 302s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 302s from . import multiarray 302s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 302s from . import overrides 302s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 302s from numpy.core._multiarray_umath import ( 302s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 302s 302s During handling of the above exception, another exception occurred: 302s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 302s from numpy.__config__ import show as show_config 302s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 302s from numpy.core._multiarray_umath import ( 302s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 302s raise ImportError(msg) 302s E ImportError: 302s E 302s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 302s E 302s E Importing the numpy C-extensions failed. This error can happen for 302s E many reasons, often due to issues with your setup or how NumPy was 302s E installed. 302s E 302s E We have compiled some common reasons and troubleshooting tips at: 302s E 302s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 302s E 302s E Please note and check the following: 302s E 302s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 302s E * The NumPy version is: "1.26.4" 302s E 302s E and make sure that they are the versions you expect. 302s E Please carefully study the documentation linked above for further help. 302s E 302s E Original error was: No module named 'numpy.core._multiarray_umath' 302s 302s The above exception was the direct cause of the following exception: 302s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 302s return _bootstrap._gcd_import(name[level:], package, level) 302s testsuite/MDAnalysisTests/__init__.py:125: in 302s from MDAnalysisTests.util import ( 302s testsuite/MDAnalysisTests/util.py:41: in 302s from numpy.testing import assert_warns 302s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 302s raise ImportError(msg) from e 302s E ImportError: Error importing numpy: you should not try to import numpy from 302s E its source directory; please exit the numpy source tree, and relaunch 302s E your python interpreter from there. 302s _______ ERROR collecting testsuite/MDAnalysisTests/topology/test_itp.py ________ 302s ImportError while importing test module '/tmp/autopkgtest.vhk5Bq/build.ka4/src/testsuite/MDAnalysisTests/topology/test_itp.py'. 302s Hint: make sure your test modules/packages have valid Python names. 302s Traceback: 302s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 302s from . import multiarray 302s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 302s from . import overrides 302s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 302s from numpy.core._multiarray_umath import ( 302s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 302s 302s During handling of the above exception, another exception occurred: 302s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 302s from numpy.__config__ import show as show_config 302s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 302s from numpy.core._multiarray_umath import ( 302s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 302s raise ImportError(msg) 302s E ImportError: 302s E 302s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 302s E 302s E Importing the numpy C-extensions failed. This error can happen for 302s E many reasons, often due to issues with your setup or how NumPy was 302s E installed. 302s E 302s E We have compiled some common reasons and troubleshooting tips at: 302s E 302s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 302s E 302s E Please note and check the following: 302s E 302s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 302s E * The NumPy version is: "1.26.4" 302s E 302s E and make sure that they are the versions you expect. 302s E Please carefully study the documentation linked above for further help. 302s E 302s E Original error was: No module named 'numpy.core._multiarray_umath' 302s 302s The above exception was the direct cause of the following exception: 302s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 302s return _bootstrap._gcd_import(name[level:], package, level) 302s testsuite/MDAnalysisTests/__init__.py:125: in 302s from MDAnalysisTests.util import ( 302s testsuite/MDAnalysisTests/util.py:41: in 302s from numpy.testing import assert_warns 302s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 302s raise ImportError(msg) from e 302s E ImportError: Error importing numpy: you should not try to import numpy from 302s E its source directory; please exit the numpy source tree, and relaunch 302s E your python interpreter from there. 302s ____ ERROR collecting testsuite/MDAnalysisTests/topology/test_lammpsdata.py ____ 302s ImportError while importing test module '/tmp/autopkgtest.vhk5Bq/build.ka4/src/testsuite/MDAnalysisTests/topology/test_lammpsdata.py'. 302s Hint: make sure your test modules/packages have valid Python names. 302s Traceback: 302s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 302s from . import multiarray 302s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 302s from . import overrides 302s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 302s from numpy.core._multiarray_umath import ( 302s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 302s 302s During handling of the above exception, another exception occurred: 302s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 302s from numpy.__config__ import show as show_config 302s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 302s from numpy.core._multiarray_umath import ( 302s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 302s raise ImportError(msg) 302s E ImportError: 302s E 302s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 302s E 302s E Importing the numpy C-extensions failed. This error can happen for 302s E many reasons, often due to issues with your setup or how NumPy was 302s E installed. 302s E 302s E We have compiled some common reasons and troubleshooting tips at: 302s E 302s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 302s E 302s E Please note and check the following: 302s E 302s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 302s E * The NumPy version is: "1.26.4" 302s E 302s E and make sure that they are the versions you expect. 302s E Please carefully study the documentation linked above for further help. 302s E 302s E Original error was: No module named 'numpy.core._multiarray_umath' 302s 302s The above exception was the direct cause of the following exception: 302s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 302s return _bootstrap._gcd_import(name[level:], package, level) 302s testsuite/MDAnalysisTests/__init__.py:125: in 302s from MDAnalysisTests.util import ( 302s testsuite/MDAnalysisTests/util.py:41: in 302s from numpy.testing import assert_warns 302s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 302s raise ImportError(msg) from e 302s E ImportError: Error importing numpy: you should not try to import numpy from 302s E its source directory; please exit the numpy source tree, and relaunch 302s E your python interpreter from there. 302s _____ ERROR collecting testsuite/MDAnalysisTests/topology/test_minimal.py ______ 302s ImportError while importing test module '/tmp/autopkgtest.vhk5Bq/build.ka4/src/testsuite/MDAnalysisTests/topology/test_minimal.py'. 302s Hint: make sure your test modules/packages have valid Python names. 302s Traceback: 302s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 302s from . import multiarray 302s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 302s from . import overrides 302s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 302s from numpy.core._multiarray_umath import ( 302s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 302s 302s During handling of the above exception, another exception occurred: 302s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 302s from numpy.__config__ import show as show_config 302s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 302s from numpy.core._multiarray_umath import ( 302s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 302s raise ImportError(msg) 302s E ImportError: 302s E 302s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 302s E 302s E Importing the numpy C-extensions failed. This error can happen for 302s E many reasons, often due to issues with your setup or how NumPy was 302s E installed. 302s E 302s E We have compiled some common reasons and troubleshooting tips at: 302s E 302s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 302s E 302s E Please note and check the following: 302s E 302s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 302s E * The NumPy version is: "1.26.4" 302s E 302s E and make sure that they are the versions you expect. 302s E Please carefully study the documentation linked above for further help. 302s E 302s E Original error was: No module named 'numpy.core._multiarray_umath' 302s 302s The above exception was the direct cause of the following exception: 302s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 302s return _bootstrap._gcd_import(name[level:], package, level) 302s testsuite/MDAnalysisTests/__init__.py:125: in 302s from MDAnalysisTests.util import ( 302s testsuite/MDAnalysisTests/util.py:41: in 302s from numpy.testing import assert_warns 302s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 302s raise ImportError(msg) from e 302s E ImportError: Error importing numpy: you should not try to import numpy from 302s E its source directory; please exit the numpy source tree, and relaunch 302s E your python interpreter from there. 302s _______ ERROR collecting testsuite/MDAnalysisTests/topology/test_mmtf.py _______ 302s ImportError while importing test module '/tmp/autopkgtest.vhk5Bq/build.ka4/src/testsuite/MDAnalysisTests/topology/test_mmtf.py'. 302s Hint: make sure your test modules/packages have valid Python names. 302s Traceback: 302s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 302s from . import multiarray 302s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 302s from . import overrides 302s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 302s from numpy.core._multiarray_umath import ( 302s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 302s 302s During handling of the above exception, another exception occurred: 302s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 302s from numpy.__config__ import show as show_config 302s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 302s from numpy.core._multiarray_umath import ( 302s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 302s raise ImportError(msg) 302s E ImportError: 302s E 302s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 302s E 302s E Importing the numpy C-extensions failed. This error can happen for 302s E many reasons, often due to issues with your setup or how NumPy was 302s E installed. 302s E 302s E We have compiled some common reasons and troubleshooting tips at: 302s E 302s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 302s E 302s E Please note and check the following: 302s E 302s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 302s E * The NumPy version is: "1.26.4" 302s E 302s E and make sure that they are the versions you expect. 302s E Please carefully study the documentation linked above for further help. 302s E 302s E Original error was: No module named 'numpy.core._multiarray_umath' 302s 302s The above exception was the direct cause of the following exception: 302s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 302s return _bootstrap._gcd_import(name[level:], package, level) 302s testsuite/MDAnalysisTests/__init__.py:125: in 302s from MDAnalysisTests.util import ( 302s testsuite/MDAnalysisTests/util.py:41: in 302s from numpy.testing import assert_warns 302s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 302s raise ImportError(msg) from e 302s E ImportError: Error importing numpy: you should not try to import numpy from 302s E its source directory; please exit the numpy source tree, and relaunch 302s E your python interpreter from there. 302s _______ ERROR collecting testsuite/MDAnalysisTests/topology/test_mol2.py _______ 302s ImportError while importing test module '/tmp/autopkgtest.vhk5Bq/build.ka4/src/testsuite/MDAnalysisTests/topology/test_mol2.py'. 302s Hint: make sure your test modules/packages have valid Python names. 302s Traceback: 302s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 302s from . import multiarray 302s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 302s from . import overrides 302s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 302s from numpy.core._multiarray_umath import ( 302s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 302s 302s During handling of the above exception, another exception occurred: 302s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 302s from numpy.__config__ import show as show_config 302s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 302s from numpy.core._multiarray_umath import ( 302s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 302s raise ImportError(msg) 302s E ImportError: 302s E 302s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 302s E 302s E Importing the numpy C-extensions failed. This error can happen for 302s E many reasons, often due to issues with your setup or how NumPy was 302s E installed. 302s E 302s E We have compiled some common reasons and troubleshooting tips at: 302s E 302s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 302s E 302s E Please note and check the following: 302s E 302s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 302s E * The NumPy version is: "1.26.4" 302s E 302s E and make sure that they are the versions you expect. 302s E Please carefully study the documentation linked above for further help. 302s E 302s E Original error was: No module named 'numpy.core._multiarray_umath' 302s 302s The above exception was the direct cause of the following exception: 302s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 302s return _bootstrap._gcd_import(name[level:], package, level) 302s testsuite/MDAnalysisTests/__init__.py:125: in 302s from MDAnalysisTests.util import ( 302s testsuite/MDAnalysisTests/util.py:41: in 302s from numpy.testing import assert_warns 302s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 302s raise ImportError(msg) from e 302s E ImportError: Error importing numpy: you should not try to import numpy from 302s E its source directory; please exit the numpy source tree, and relaunch 302s E your python interpreter from there. 302s _______ ERROR collecting testsuite/MDAnalysisTests/topology/test_pdb.py ________ 302s ImportError while importing test module '/tmp/autopkgtest.vhk5Bq/build.ka4/src/testsuite/MDAnalysisTests/topology/test_pdb.py'. 302s Hint: make sure your test modules/packages have valid Python names. 302s Traceback: 302s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 302s from . import multiarray 302s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 302s from . import overrides 302s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 302s from numpy.core._multiarray_umath import ( 302s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 302s 302s During handling of the above exception, another exception occurred: 302s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 302s from numpy.__config__ import show as show_config 302s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 302s from numpy.core._multiarray_umath import ( 302s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 302s raise ImportError(msg) 302s E ImportError: 302s E 302s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 302s E 302s E Importing the numpy C-extensions failed. This error can happen for 302s E many reasons, often due to issues with your setup or how NumPy was 302s E installed. 302s E 302s E We have compiled some common reasons and troubleshooting tips at: 302s E 302s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 302s E 302s E Please note and check the following: 302s E 302s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 302s E * The NumPy version is: "1.26.4" 302s E 302s E and make sure that they are the versions you expect. 302s E Please carefully study the documentation linked above for further help. 302s E 302s E Original error was: No module named 'numpy.core._multiarray_umath' 302s 302s The above exception was the direct cause of the following exception: 302s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 302s return _bootstrap._gcd_import(name[level:], package, level) 302s testsuite/MDAnalysisTests/__init__.py:125: in 302s from MDAnalysisTests.util import ( 302s testsuite/MDAnalysisTests/util.py:41: in 302s from numpy.testing import assert_warns 302s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 302s raise ImportError(msg) from e 302s E ImportError: Error importing numpy: you should not try to import numpy from 302s E its source directory; please exit the numpy source tree, and relaunch 302s E your python interpreter from there. 302s ______ ERROR collecting testsuite/MDAnalysisTests/topology/test_pdbqt.py _______ 302s ImportError while importing test module '/tmp/autopkgtest.vhk5Bq/build.ka4/src/testsuite/MDAnalysisTests/topology/test_pdbqt.py'. 302s Hint: make sure your test modules/packages have valid Python names. 302s Traceback: 302s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 302s from . import multiarray 302s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 302s from . import overrides 302s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 302s from numpy.core._multiarray_umath import ( 302s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 302s 302s During handling of the above exception, another exception occurred: 302s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 302s from numpy.__config__ import show as show_config 302s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 302s from numpy.core._multiarray_umath import ( 302s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 302s raise ImportError(msg) 302s E ImportError: 302s E 302s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 302s E 302s E Importing the numpy C-extensions failed. This error can happen for 302s E many reasons, often due to issues with your setup or how NumPy was 302s E installed. 302s E 302s E We have compiled some common reasons and troubleshooting tips at: 302s E 302s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 302s E 302s E Please note and check the following: 302s E 302s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 302s E * The NumPy version is: "1.26.4" 302s E 302s E and make sure that they are the versions you expect. 302s E Please carefully study the documentation linked above for further help. 302s E 302s E Original error was: No module named 'numpy.core._multiarray_umath' 302s 302s The above exception was the direct cause of the following exception: 302s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 302s return _bootstrap._gcd_import(name[level:], package, level) 302s testsuite/MDAnalysisTests/__init__.py:125: in 302s from MDAnalysisTests.util import ( 302s testsuite/MDAnalysisTests/util.py:41: in 302s from numpy.testing import assert_warns 302s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 302s raise ImportError(msg) from e 302s E ImportError: Error importing numpy: you should not try to import numpy from 302s E its source directory; please exit the numpy source tree, and relaunch 302s E your python interpreter from there. 302s _______ ERROR collecting testsuite/MDAnalysisTests/topology/test_pqr.py ________ 302s ImportError while importing test module '/tmp/autopkgtest.vhk5Bq/build.ka4/src/testsuite/MDAnalysisTests/topology/test_pqr.py'. 302s Hint: make sure your test modules/packages have valid Python names. 302s Traceback: 302s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 302s from . import multiarray 302s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 302s from . import overrides 302s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 302s from numpy.core._multiarray_umath import ( 302s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 302s 302s During handling of the above exception, another exception occurred: 302s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 302s from numpy.__config__ import show as show_config 302s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 302s from numpy.core._multiarray_umath import ( 302s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 302s raise ImportError(msg) 302s E ImportError: 302s E 302s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 302s E 302s E Importing the numpy C-extensions failed. This error can happen for 302s E many reasons, often due to issues with your setup or how NumPy was 302s E installed. 302s E 302s E We have compiled some common reasons and troubleshooting tips at: 302s E 302s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 302s E 302s E Please note and check the following: 302s E 302s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 302s E * The NumPy version is: "1.26.4" 302s E 302s E and make sure that they are the versions you expect. 302s E Please carefully study the documentation linked above for further help. 302s E 302s E Original error was: No module named 'numpy.core._multiarray_umath' 302s 302s The above exception was the direct cause of the following exception: 302s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 302s return _bootstrap._gcd_import(name[level:], package, level) 302s testsuite/MDAnalysisTests/__init__.py:125: in 302s from MDAnalysisTests.util import ( 302s testsuite/MDAnalysisTests/util.py:41: in 302s from numpy.testing import assert_warns 302s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 302s raise ImportError(msg) from e 302s E ImportError: Error importing numpy: you should not try to import numpy from 302s E its source directory; please exit the numpy source tree, and relaunch 302s E your python interpreter from there. 302s _______ ERROR collecting testsuite/MDAnalysisTests/topology/test_psf.py ________ 302s ImportError while importing test module '/tmp/autopkgtest.vhk5Bq/build.ka4/src/testsuite/MDAnalysisTests/topology/test_psf.py'. 302s Hint: make sure your test modules/packages have valid Python names. 302s Traceback: 302s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 302s from . import multiarray 302s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 302s from . import overrides 302s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 302s from numpy.core._multiarray_umath import ( 302s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 302s 302s During handling of the above exception, another exception occurred: 302s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 302s from numpy.__config__ import show as show_config 302s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 302s from numpy.core._multiarray_umath import ( 302s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 302s raise ImportError(msg) 302s E ImportError: 302s E 302s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 302s E 302s E Importing the numpy C-extensions failed. This error can happen for 302s E many reasons, often due to issues with your setup or how NumPy was 302s E installed. 302s E 302s E We have compiled some common reasons and troubleshooting tips at: 302s E 302s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 302s E 302s E Please note and check the following: 302s E 302s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 302s E * The NumPy version is: "1.26.4" 302s E 302s E and make sure that they are the versions you expect. 302s E Please carefully study the documentation linked above for further help. 302s E 302s E Original error was: No module named 'numpy.core._multiarray_umath' 302s 302s The above exception was the direct cause of the following exception: 302s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 302s return _bootstrap._gcd_import(name[level:], package, level) 302s testsuite/MDAnalysisTests/__init__.py:125: in 302s from MDAnalysisTests.util import ( 302s testsuite/MDAnalysisTests/util.py:41: in 302s from numpy.testing import assert_warns 302s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 302s raise ImportError(msg) from e 302s E ImportError: Error importing numpy: you should not try to import numpy from 302s E its source directory; please exit the numpy source tree, and relaunch 302s E your python interpreter from there. 302s _______ ERROR collecting testsuite/MDAnalysisTests/topology/test_top.py ________ 302s ImportError while importing test module '/tmp/autopkgtest.vhk5Bq/build.ka4/src/testsuite/MDAnalysisTests/topology/test_top.py'. 302s Hint: make sure your test modules/packages have valid Python names. 302s Traceback: 302s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 302s from . import multiarray 302s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 302s from . import overrides 302s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 302s from numpy.core._multiarray_umath import ( 302s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 302s 302s During handling of the above exception, another exception occurred: 302s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 302s from numpy.__config__ import show as show_config 302s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 302s from numpy.core._multiarray_umath import ( 302s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 302s raise ImportError(msg) 302s E ImportError: 302s E 302s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 302s E 302s E Importing the numpy C-extensions failed. This error can happen for 302s E many reasons, often due to issues with your setup or how NumPy was 302s E installed. 302s E 302s E We have compiled some common reasons and troubleshooting tips at: 302s E 302s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 302s E 302s E Please note and check the following: 302s E 302s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 302s E * The NumPy version is: "1.26.4" 302s E 302s E and make sure that they are the versions you expect. 302s E Please carefully study the documentation linked above for further help. 302s E 302s E Original error was: No module named 'numpy.core._multiarray_umath' 302s 302s The above exception was the direct cause of the following exception: 302s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 302s return _bootstrap._gcd_import(name[level:], package, level) 302s testsuite/MDAnalysisTests/__init__.py:125: in 302s from MDAnalysisTests.util import ( 302s testsuite/MDAnalysisTests/util.py:41: in 302s from numpy.testing import assert_warns 302s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 302s raise ImportError(msg) from e 302s E ImportError: Error importing numpy: you should not try to import numpy from 302s E its source directory; please exit the numpy source tree, and relaunch 302s E your python interpreter from there. 302s __ ERROR collecting testsuite/MDAnalysisTests/topology/test_topology_base.py ___ 302s ImportError while importing test module '/tmp/autopkgtest.vhk5Bq/build.ka4/src/testsuite/MDAnalysisTests/topology/test_topology_base.py'. 302s Hint: make sure your test modules/packages have valid Python names. 302s Traceback: 302s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 302s from . import multiarray 302s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 302s from . import overrides 302s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 302s from numpy.core._multiarray_umath import ( 302s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 302s 302s During handling of the above exception, another exception occurred: 302s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 302s from numpy.__config__ import show as show_config 302s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 302s from numpy.core._multiarray_umath import ( 302s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 302s raise ImportError(msg) 302s E ImportError: 302s E 302s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 302s E 302s E Importing the numpy C-extensions failed. This error can happen for 302s E many reasons, often due to issues with your setup or how NumPy was 302s E installed. 302s E 302s E We have compiled some common reasons and troubleshooting tips at: 302s E 302s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 302s E 302s E Please note and check the following: 302s E 302s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 302s E * The NumPy version is: "1.26.4" 302s E 302s E and make sure that they are the versions you expect. 302s E Please carefully study the documentation linked above for further help. 302s E 302s E Original error was: No module named 'numpy.core._multiarray_umath' 302s 302s The above exception was the direct cause of the following exception: 302s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 302s return _bootstrap._gcd_import(name[level:], package, level) 302s testsuite/MDAnalysisTests/__init__.py:125: in 302s from MDAnalysisTests.util import ( 302s testsuite/MDAnalysisTests/util.py:41: in 302s from numpy.testing import assert_warns 302s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 302s raise ImportError(msg) from e 302s E ImportError: Error importing numpy: you should not try to import numpy from 302s E its source directory; please exit the numpy source tree, and relaunch 302s E your python interpreter from there. 302s _ ERROR collecting testsuite/MDAnalysisTests/topology/test_topology_str_types.py _ 302s ImportError while importing test module '/tmp/autopkgtest.vhk5Bq/build.ka4/src/testsuite/MDAnalysisTests/topology/test_topology_str_types.py'. 302s Hint: make sure your test modules/packages have valid Python names. 302s Traceback: 302s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 302s from . import multiarray 302s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 302s from . import overrides 302s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 302s from numpy.core._multiarray_umath import ( 302s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 302s 302s During handling of the above exception, another exception occurred: 302s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 302s from numpy.__config__ import show as show_config 302s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 302s from numpy.core._multiarray_umath import ( 302s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 302s raise ImportError(msg) 302s E ImportError: 302s E 302s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 302s E 302s E Importing the numpy C-extensions failed. This error can happen for 302s E many reasons, often due to issues with your setup or how NumPy was 302s E installed. 302s E 302s E We have compiled some common reasons and troubleshooting tips at: 302s E 302s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 302s E 302s E Please note and check the following: 302s E 302s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 302s E * The NumPy version is: "1.26.4" 302s E 302s E and make sure that they are the versions you expect. 302s E Please carefully study the documentation linked above for further help. 302s E 302s E Original error was: No module named 'numpy.core._multiarray_umath' 302s 302s The above exception was the direct cause of the following exception: 302s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 302s return _bootstrap._gcd_import(name[level:], package, level) 302s testsuite/MDAnalysisTests/__init__.py:125: in 302s from MDAnalysisTests.util import ( 302s testsuite/MDAnalysisTests/util.py:41: in 302s from numpy.testing import assert_warns 302s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 302s raise ImportError(msg) from e 302s E ImportError: Error importing numpy: you should not try to import numpy from 302s E its source directory; please exit the numpy source tree, and relaunch 302s E your python interpreter from there. 302s ____ ERROR collecting testsuite/MDAnalysisTests/topology/test_tprparser.py _____ 302s ImportError while importing test module '/tmp/autopkgtest.vhk5Bq/build.ka4/src/testsuite/MDAnalysisTests/topology/test_tprparser.py'. 302s Hint: make sure your test modules/packages have valid Python names. 302s Traceback: 302s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 302s from . import multiarray 302s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 302s from . import overrides 302s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 302s from numpy.core._multiarray_umath import ( 302s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 302s 302s During handling of the above exception, another exception occurred: 302s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 302s from numpy.__config__ import show as show_config 302s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 302s from numpy.core._multiarray_umath import ( 302s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 302s raise ImportError(msg) 302s E ImportError: 302s E 302s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 302s E 302s E Importing the numpy C-extensions failed. This error can happen for 302s E many reasons, often due to issues with your setup or how NumPy was 302s E installed. 302s E 302s E We have compiled some common reasons and troubleshooting tips at: 302s E 302s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 302s E 302s E Please note and check the following: 302s E 302s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 302s E * The NumPy version is: "1.26.4" 302s E 302s E and make sure that they are the versions you expect. 302s E Please carefully study the documentation linked above for further help. 302s E 302s E Original error was: No module named 'numpy.core._multiarray_umath' 302s 302s The above exception was the direct cause of the following exception: 302s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 302s return _bootstrap._gcd_import(name[level:], package, level) 302s testsuite/MDAnalysisTests/__init__.py:125: in 302s from MDAnalysisTests.util import ( 302s testsuite/MDAnalysisTests/util.py:41: in 302s from numpy.testing import assert_warns 302s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 302s raise ImportError(msg) from e 302s E ImportError: Error importing numpy: you should not try to import numpy from 302s E its source directory; please exit the numpy source tree, and relaunch 302s E your python interpreter from there. 302s _______ ERROR collecting testsuite/MDAnalysisTests/topology/test_txyz.py _______ 302s ImportError while importing test module '/tmp/autopkgtest.vhk5Bq/build.ka4/src/testsuite/MDAnalysisTests/topology/test_txyz.py'. 302s Hint: make sure your test modules/packages have valid Python names. 302s Traceback: 302s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 302s from . import multiarray 302s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 302s from . import overrides 302s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 302s from numpy.core._multiarray_umath import ( 302s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 302s 302s During handling of the above exception, another exception occurred: 302s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 302s from numpy.__config__ import show as show_config 302s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 302s from numpy.core._multiarray_umath import ( 302s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 302s raise ImportError(msg) 302s E ImportError: 302s E 302s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 302s E 302s E Importing the numpy C-extensions failed. This error can happen for 302s E many reasons, often due to issues with your setup or how NumPy was 302s E installed. 302s E 302s E We have compiled some common reasons and troubleshooting tips at: 302s E 302s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 302s E 302s E Please note and check the following: 302s E 302s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 302s E * The NumPy version is: "1.26.4" 302s E 302s E and make sure that they are the versions you expect. 302s E Please carefully study the documentation linked above for further help. 302s E 302s E Original error was: No module named 'numpy.core._multiarray_umath' 302s 302s The above exception was the direct cause of the following exception: 302s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 302s return _bootstrap._gcd_import(name[level:], package, level) 302s testsuite/MDAnalysisTests/__init__.py:125: in 302s from MDAnalysisTests.util import ( 302s testsuite/MDAnalysisTests/util.py:41: in 302s from numpy.testing import assert_warns 302s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 302s raise ImportError(msg) from e 302s E ImportError: Error importing numpy: you should not try to import numpy from 302s E its source directory; please exit the numpy source tree, and relaunch 302s E your python interpreter from there. 302s _______ ERROR collecting testsuite/MDAnalysisTests/topology/test_xpdb.py _______ 302s ImportError while importing test module '/tmp/autopkgtest.vhk5Bq/build.ka4/src/testsuite/MDAnalysisTests/topology/test_xpdb.py'. 302s Hint: make sure your test modules/packages have valid Python names. 302s Traceback: 302s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 302s from . import multiarray 302s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 302s from . import overrides 302s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 302s from numpy.core._multiarray_umath import ( 302s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 302s 302s During handling of the above exception, another exception occurred: 302s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 302s from numpy.__config__ import show as show_config 302s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 302s from numpy.core._multiarray_umath import ( 302s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 302s raise ImportError(msg) 302s E ImportError: 302s E 302s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 302s E 302s E Importing the numpy C-extensions failed. This error can happen for 302s E many reasons, often due to issues with your setup or how NumPy was 302s E installed. 302s E 302s E We have compiled some common reasons and troubleshooting tips at: 302s E 302s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 302s E 302s E Please note and check the following: 302s E 302s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 302s E * The NumPy version is: "1.26.4" 302s E 302s E and make sure that they are the versions you expect. 302s E Please carefully study the documentation linked above for further help. 302s E 302s E Original error was: No module named 'numpy.core._multiarray_umath' 302s 302s The above exception was the direct cause of the following exception: 302s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 302s return _bootstrap._gcd_import(name[level:], package, level) 302s testsuite/MDAnalysisTests/__init__.py:125: in 302s from MDAnalysisTests.util import ( 302s testsuite/MDAnalysisTests/util.py:41: in 302s from numpy.testing import assert_warns 302s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 302s raise ImportError(msg) from e 302s E ImportError: Error importing numpy: you should not try to import numpy from 302s E its source directory; please exit the numpy source tree, and relaunch 302s E your python interpreter from there. 302s _______ ERROR collecting testsuite/MDAnalysisTests/topology/test_xyz.py ________ 302s ImportError while importing test module '/tmp/autopkgtest.vhk5Bq/build.ka4/src/testsuite/MDAnalysisTests/topology/test_xyz.py'. 302s Hint: make sure your test modules/packages have valid Python names. 302s Traceback: 302s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 302s from . import multiarray 302s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 302s from . import overrides 302s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 302s from numpy.core._multiarray_umath import ( 302s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 302s 302s During handling of the above exception, another exception occurred: 302s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 302s from numpy.__config__ import show as show_config 302s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 302s from numpy.core._multiarray_umath import ( 302s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 302s raise ImportError(msg) 302s E ImportError: 302s E 302s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 302s E 302s E Importing the numpy C-extensions failed. This error can happen for 302s E many reasons, often due to issues with your setup or how NumPy was 302s E installed. 302s E 302s E We have compiled some common reasons and troubleshooting tips at: 302s E 302s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 302s E 302s E Please note and check the following: 302s E 302s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 302s E * The NumPy version is: "1.26.4" 302s E 302s E and make sure that they are the versions you expect. 302s E Please carefully study the documentation linked above for further help. 302s E 302s E Original error was: No module named 'numpy.core._multiarray_umath' 302s 302s The above exception was the direct cause of the following exception: 302s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 302s return _bootstrap._gcd_import(name[level:], package, level) 302s testsuite/MDAnalysisTests/__init__.py:125: in 302s from MDAnalysisTests.util import ( 302s testsuite/MDAnalysisTests/util.py:41: in 302s from numpy.testing import assert_warns 302s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 302s raise ImportError(msg) from e 302s E ImportError: Error importing numpy: you should not try to import numpy from 302s E its source directory; please exit the numpy source tree, and relaunch 302s E your python interpreter from there. 302s ___ ERROR collecting testsuite/MDAnalysisTests/transformations/test_base.py ____ 302s ImportError while importing test module '/tmp/autopkgtest.vhk5Bq/build.ka4/src/testsuite/MDAnalysisTests/transformations/test_base.py'. 302s Hint: make sure your test modules/packages have valid Python names. 302s Traceback: 302s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 302s from . import multiarray 302s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 302s from . import overrides 302s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 302s from numpy.core._multiarray_umath import ( 302s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 302s 302s During handling of the above exception, another exception occurred: 302s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 302s from numpy.__config__ import show as show_config 302s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 302s from numpy.core._multiarray_umath import ( 302s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 302s raise ImportError(msg) 302s E ImportError: 302s E 302s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 302s E 302s E Importing the numpy C-extensions failed. This error can happen for 302s E many reasons, often due to issues with your setup or how NumPy was 302s E installed. 302s E 302s E We have compiled some common reasons and troubleshooting tips at: 302s E 302s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 302s E 302s E Please note and check the following: 302s E 302s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 302s E * The NumPy version is: "1.26.4" 302s E 302s E and make sure that they are the versions you expect. 302s E Please carefully study the documentation linked above for further help. 302s E 302s E Original error was: No module named 'numpy.core._multiarray_umath' 302s 302s The above exception was the direct cause of the following exception: 302s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 302s return _bootstrap._gcd_import(name[level:], package, level) 302s testsuite/MDAnalysisTests/__init__.py:125: in 302s from MDAnalysisTests.util import ( 302s testsuite/MDAnalysisTests/util.py:41: in 302s from numpy.testing import assert_warns 302s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 302s raise ImportError(msg) from e 302s E ImportError: Error importing numpy: you should not try to import numpy from 302s E its source directory; please exit the numpy source tree, and relaunch 302s E your python interpreter from there. 302s _ ERROR collecting testsuite/MDAnalysisTests/transformations/test_boxdimensions.py _ 302s ImportError while importing test module '/tmp/autopkgtest.vhk5Bq/build.ka4/src/testsuite/MDAnalysisTests/transformations/test_boxdimensions.py'. 302s Hint: make sure your test modules/packages have valid Python names. 302s Traceback: 302s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 302s from . import multiarray 302s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 302s from . import overrides 302s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 302s from numpy.core._multiarray_umath import ( 302s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 302s 302s During handling of the above exception, another exception occurred: 302s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 302s from numpy.__config__ import show as show_config 302s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 302s from numpy.core._multiarray_umath import ( 302s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 302s raise ImportError(msg) 302s E ImportError: 302s E 302s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 302s E 302s E Importing the numpy C-extensions failed. This error can happen for 302s E many reasons, often due to issues with your setup or how NumPy was 302s E installed. 302s E 302s E We have compiled some common reasons and troubleshooting tips at: 302s E 302s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 302s E 302s E Please note and check the following: 302s E 302s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 302s E * The NumPy version is: "1.26.4" 302s E 302s E and make sure that they are the versions you expect. 302s E Please carefully study the documentation linked above for further help. 302s E 302s E Original error was: No module named 'numpy.core._multiarray_umath' 302s 302s The above exception was the direct cause of the following exception: 302s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 302s return _bootstrap._gcd_import(name[level:], package, level) 302s testsuite/MDAnalysisTests/__init__.py:125: in 302s from MDAnalysisTests.util import ( 302s testsuite/MDAnalysisTests/util.py:41: in 302s from numpy.testing import assert_warns 302s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 302s raise ImportError(msg) from e 302s E ImportError: Error importing numpy: you should not try to import numpy from 302s E its source directory; please exit the numpy source tree, and relaunch 302s E your python interpreter from there. 302s ____ ERROR collecting testsuite/MDAnalysisTests/transformations/test_fit.py ____ 302s ImportError while importing test module '/tmp/autopkgtest.vhk5Bq/build.ka4/src/testsuite/MDAnalysisTests/transformations/test_fit.py'. 302s Hint: make sure your test modules/packages have valid Python names. 302s Traceback: 302s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 302s from . import multiarray 302s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 302s from . import overrides 302s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 302s from numpy.core._multiarray_umath import ( 302s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 302s 302s During handling of the above exception, another exception occurred: 302s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 302s from numpy.__config__ import show as show_config 302s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 302s from numpy.core._multiarray_umath import ( 302s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 302s raise ImportError(msg) 302s E ImportError: 302s E 302s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 302s E 302s E Importing the numpy C-extensions failed. This error can happen for 302s E many reasons, often due to issues with your setup or how NumPy was 302s E installed. 302s E 302s E We have compiled some common reasons and troubleshooting tips at: 302s E 302s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 302s E 302s E Please note and check the following: 302s E 302s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 302s E * The NumPy version is: "1.26.4" 302s E 302s E and make sure that they are the versions you expect. 302s E Please carefully study the documentation linked above for further help. 302s E 302s E Original error was: No module named 'numpy.core._multiarray_umath' 302s 302s The above exception was the direct cause of the following exception: 302s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 302s return _bootstrap._gcd_import(name[level:], package, level) 302s testsuite/MDAnalysisTests/__init__.py:125: in 302s from MDAnalysisTests.util import ( 302s testsuite/MDAnalysisTests/util.py:41: in 302s from numpy.testing import assert_warns 302s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 302s raise ImportError(msg) from e 302s E ImportError: Error importing numpy: you should not try to import numpy from 302s E its source directory; please exit the numpy source tree, and relaunch 302s E your python interpreter from there. 302s __ ERROR collecting testsuite/MDAnalysisTests/transformations/test_nojump.py ___ 302s ImportError while importing test module '/tmp/autopkgtest.vhk5Bq/build.ka4/src/testsuite/MDAnalysisTests/transformations/test_nojump.py'. 302s Hint: make sure your test modules/packages have valid Python names. 302s Traceback: 302s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 302s from . import multiarray 302s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 302s from . import overrides 302s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 302s from numpy.core._multiarray_umath import ( 302s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 302s 302s During handling of the above exception, another exception occurred: 302s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 302s from numpy.__config__ import show as show_config 302s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 302s from numpy.core._multiarray_umath import ( 302s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 302s raise ImportError(msg) 302s E ImportError: 302s E 302s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 302s E 302s E Importing the numpy C-extensions failed. This error can happen for 302s E many reasons, often due to issues with your setup or how NumPy was 302s E installed. 302s E 302s E We have compiled some common reasons and troubleshooting tips at: 302s E 302s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 302s E 302s E Please note and check the following: 302s E 302s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 302s E * The NumPy version is: "1.26.4" 302s E 302s E and make sure that they are the versions you expect. 302s E Please carefully study the documentation linked above for further help. 302s E 302s E Original error was: No module named 'numpy.core._multiarray_umath' 302s 302s The above exception was the direct cause of the following exception: 302s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 302s return _bootstrap._gcd_import(name[level:], package, level) 302s testsuite/MDAnalysisTests/__init__.py:125: in 302s from MDAnalysisTests.util import ( 302s testsuite/MDAnalysisTests/util.py:41: in 302s from numpy.testing import assert_warns 302s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 302s raise ImportError(msg) from e 302s E ImportError: Error importing numpy: you should not try to import numpy from 302s E its source directory; please exit the numpy source tree, and relaunch 302s E your python interpreter from there. 302s _ ERROR collecting testsuite/MDAnalysisTests/transformations/test_positionaveraging.py _ 302s ImportError while importing test module '/tmp/autopkgtest.vhk5Bq/build.ka4/src/testsuite/MDAnalysisTests/transformations/test_positionaveraging.py'. 302s Hint: make sure your test modules/packages have valid Python names. 302s Traceback: 302s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 302s from . import multiarray 302s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 302s from . import overrides 302s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 302s from numpy.core._multiarray_umath import ( 302s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 302s 302s During handling of the above exception, another exception occurred: 302s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 302s from numpy.__config__ import show as show_config 302s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 302s from numpy.core._multiarray_umath import ( 302s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 302s raise ImportError(msg) 302s E ImportError: 302s E 302s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 302s E 302s E Importing the numpy C-extensions failed. This error can happen for 302s E many reasons, often due to issues with your setup or how NumPy was 302s E installed. 302s E 302s E We have compiled some common reasons and troubleshooting tips at: 302s E 302s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 302s E 302s E Please note and check the following: 302s E 302s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 302s E * The NumPy version is: "1.26.4" 302s E 302s E and make sure that they are the versions you expect. 302s E Please carefully study the documentation linked above for further help. 302s E 302s E Original error was: No module named 'numpy.core._multiarray_umath' 302s 302s The above exception was the direct cause of the following exception: 302s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 302s return _bootstrap._gcd_import(name[level:], package, level) 302s testsuite/MDAnalysisTests/__init__.py:125: in 302s from MDAnalysisTests.util import ( 302s testsuite/MDAnalysisTests/util.py:41: in 302s from numpy.testing import assert_warns 302s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 302s raise ImportError(msg) from e 302s E ImportError: Error importing numpy: you should not try to import numpy from 302s E its source directory; please exit the numpy source tree, and relaunch 302s E your python interpreter from there. 302s __ ERROR collecting testsuite/MDAnalysisTests/transformations/test_rotate.py ___ 302s ImportError while importing test module '/tmp/autopkgtest.vhk5Bq/build.ka4/src/testsuite/MDAnalysisTests/transformations/test_rotate.py'. 302s Hint: make sure your test modules/packages have valid Python names. 302s Traceback: 302s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 302s from . import multiarray 302s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 302s from . import overrides 302s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 302s from numpy.core._multiarray_umath import ( 302s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 302s 302s During handling of the above exception, another exception occurred: 302s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 302s from numpy.__config__ import show as show_config 302s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 302s from numpy.core._multiarray_umath import ( 302s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 302s raise ImportError(msg) 302s E ImportError: 302s E 302s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 302s E 302s E Importing the numpy C-extensions failed. This error can happen for 302s E many reasons, often due to issues with your setup or how NumPy was 302s E installed. 302s E 302s E We have compiled some common reasons and troubleshooting tips at: 302s E 302s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 302s E 302s E Please note and check the following: 302s E 302s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 302s E * The NumPy version is: "1.26.4" 302s E 302s E and make sure that they are the versions you expect. 302s E Please carefully study the documentation linked above for further help. 302s E 302s E Original error was: No module named 'numpy.core._multiarray_umath' 302s 302s The above exception was the direct cause of the following exception: 302s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 302s return _bootstrap._gcd_import(name[level:], package, level) 302s testsuite/MDAnalysisTests/__init__.py:125: in 302s from MDAnalysisTests.util import ( 302s testsuite/MDAnalysisTests/util.py:41: in 302s from numpy.testing import assert_warns 302s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 302s raise ImportError(msg) from e 302s E ImportError: Error importing numpy: you should not try to import numpy from 302s E its source directory; please exit the numpy source tree, and relaunch 302s E your python interpreter from there. 302s _ ERROR collecting testsuite/MDAnalysisTests/transformations/test_translate.py _ 302s ImportError while importing test module '/tmp/autopkgtest.vhk5Bq/build.ka4/src/testsuite/MDAnalysisTests/transformations/test_translate.py'. 302s Hint: make sure your test modules/packages have valid Python names. 302s Traceback: 302s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 302s from . import multiarray 302s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 302s from . import overrides 302s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 302s from numpy.core._multiarray_umath import ( 302s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 302s 302s During handling of the above exception, another exception occurred: 302s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 302s from numpy.__config__ import show as show_config 302s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 302s from numpy.core._multiarray_umath import ( 302s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 302s raise ImportError(msg) 302s E ImportError: 302s E 302s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 302s E 302s E Importing the numpy C-extensions failed. This error can happen for 302s E many reasons, often due to issues with your setup or how NumPy was 302s E installed. 302s E 302s E We have compiled some common reasons and troubleshooting tips at: 302s E 302s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 302s E 302s E Please note and check the following: 302s E 302s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 302s E * The NumPy version is: "1.26.4" 302s E 302s E and make sure that they are the versions you expect. 302s E Please carefully study the documentation linked above for further help. 302s E 302s E Original error was: No module named 'numpy.core._multiarray_umath' 302s 302s The above exception was the direct cause of the following exception: 302s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 302s return _bootstrap._gcd_import(name[level:], package, level) 302s testsuite/MDAnalysisTests/__init__.py:125: in 302s from MDAnalysisTests.util import ( 302s testsuite/MDAnalysisTests/util.py:41: in 302s from numpy.testing import assert_warns 302s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 302s raise ImportError(msg) from e 302s E ImportError: Error importing numpy: you should not try to import numpy from 302s E its source directory; please exit the numpy source tree, and relaunch 302s E your python interpreter from there. 302s ___ ERROR collecting testsuite/MDAnalysisTests/transformations/test_wrap.py ____ 302s ImportError while importing test module '/tmp/autopkgtest.vhk5Bq/build.ka4/src/testsuite/MDAnalysisTests/transformations/test_wrap.py'. 302s Hint: make sure your test modules/packages have valid Python names. 302s Traceback: 302s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 302s from . import multiarray 302s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 302s from . import overrides 302s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 302s from numpy.core._multiarray_umath import ( 302s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 302s 302s During handling of the above exception, another exception occurred: 302s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 302s from numpy.__config__ import show as show_config 302s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 302s from numpy.core._multiarray_umath import ( 302s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 302s raise ImportError(msg) 302s E ImportError: 302s E 302s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 302s E 302s E Importing the numpy C-extensions failed. This error can happen for 302s E many reasons, often due to issues with your setup or how NumPy was 302s E installed. 302s E 302s E We have compiled some common reasons and troubleshooting tips at: 302s E 302s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 302s E 302s E Please note and check the following: 302s E 302s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 302s E * The NumPy version is: "1.26.4" 302s E 302s E and make sure that they are the versions you expect. 302s E Please carefully study the documentation linked above for further help. 302s E 302s E Original error was: No module named 'numpy.core._multiarray_umath' 302s 302s The above exception was the direct cause of the following exception: 302s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 302s return _bootstrap._gcd_import(name[level:], package, level) 302s testsuite/MDAnalysisTests/__init__.py:125: in 302s from MDAnalysisTests.util import ( 302s testsuite/MDAnalysisTests/util.py:41: in 302s from numpy.testing import assert_warns 302s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 302s raise ImportError(msg) from e 302s E ImportError: Error importing numpy: you should not try to import numpy from 302s E its source directory; please exit the numpy source tree, and relaunch 302s E your python interpreter from there. 302s _______ ERROR collecting testsuite/MDAnalysisTests/utils/test_authors.py _______ 302s ImportError while importing test module '/tmp/autopkgtest.vhk5Bq/build.ka4/src/testsuite/MDAnalysisTests/utils/test_authors.py'. 302s Hint: make sure your test modules/packages have valid Python names. 302s Traceback: 302s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 302s from . import multiarray 302s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 302s from . import overrides 302s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 302s from numpy.core._multiarray_umath import ( 302s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 302s 302s During handling of the above exception, another exception occurred: 302s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 302s from numpy.__config__ import show as show_config 302s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 302s from numpy.core._multiarray_umath import ( 302s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 302s raise ImportError(msg) 302s E ImportError: 302s E 302s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 302s E 302s E Importing the numpy C-extensions failed. This error can happen for 302s E many reasons, often due to issues with your setup or how NumPy was 302s E installed. 302s E 302s E We have compiled some common reasons and troubleshooting tips at: 302s E 302s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 302s E 302s E Please note and check the following: 302s E 302s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 302s E * The NumPy version is: "1.26.4" 302s E 302s E and make sure that they are the versions you expect. 302s E Please carefully study the documentation linked above for further help. 302s E 302s E Original error was: No module named 'numpy.core._multiarray_umath' 302s 302s The above exception was the direct cause of the following exception: 302s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 302s return _bootstrap._gcd_import(name[level:], package, level) 302s testsuite/MDAnalysisTests/__init__.py:125: in 302s from MDAnalysisTests.util import ( 302s testsuite/MDAnalysisTests/util.py:41: in 302s from numpy.testing import assert_warns 302s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 302s raise ImportError(msg) from e 302s E ImportError: Error importing numpy: you should not try to import numpy from 302s E its source directory; please exit the numpy source tree, and relaunch 302s E your python interpreter from there. 302s ______ ERROR collecting testsuite/MDAnalysisTests/utils/test_datafiles.py ______ 302s ImportError while importing test module '/tmp/autopkgtest.vhk5Bq/build.ka4/src/testsuite/MDAnalysisTests/utils/test_datafiles.py'. 302s Hint: make sure your test modules/packages have valid Python names. 302s Traceback: 302s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 302s from . import multiarray 302s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 302s from . import overrides 302s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 302s from numpy.core._multiarray_umath import ( 302s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 302s 302s During handling of the above exception, another exception occurred: 302s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 302s from numpy.__config__ import show as show_config 302s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 302s from numpy.core._multiarray_umath import ( 302s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 302s raise ImportError(msg) 302s E ImportError: 302s E 302s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 302s E 302s E Importing the numpy C-extensions failed. This error can happen for 302s E many reasons, often due to issues with your setup or how NumPy was 302s E installed. 302s E 302s E We have compiled some common reasons and troubleshooting tips at: 302s E 302s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 302s E 302s E Please note and check the following: 302s E 302s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 302s E * The NumPy version is: "1.26.4" 302s E 302s E and make sure that they are the versions you expect. 302s E Please carefully study the documentation linked above for further help. 302s E 302s E Original error was: No module named 'numpy.core._multiarray_umath' 302s 302s The above exception was the direct cause of the following exception: 302s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 302s return _bootstrap._gcd_import(name[level:], package, level) 302s testsuite/MDAnalysisTests/__init__.py:125: in 302s from MDAnalysisTests.util import ( 302s testsuite/MDAnalysisTests/util.py:41: in 302s from numpy.testing import assert_warns 302s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 302s raise ImportError(msg) from e 302s E ImportError: Error importing numpy: you should not try to import numpy from 302s E its source directory; please exit the numpy source tree, and relaunch 302s E your python interpreter from there. 302s ______ ERROR collecting testsuite/MDAnalysisTests/utils/test_duecredit.py ______ 302s ImportError while importing test module '/tmp/autopkgtest.vhk5Bq/build.ka4/src/testsuite/MDAnalysisTests/utils/test_duecredit.py'. 302s Hint: make sure your test modules/packages have valid Python names. 302s Traceback: 302s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 302s from . import multiarray 302s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 302s from . import overrides 302s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 302s from numpy.core._multiarray_umath import ( 302s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 302s 302s During handling of the above exception, another exception occurred: 302s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 302s from numpy.__config__ import show as show_config 302s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 302s from numpy.core._multiarray_umath import ( 302s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 302s raise ImportError(msg) 302s E ImportError: 302s E 302s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 302s E 302s E Importing the numpy C-extensions failed. This error can happen for 302s E many reasons, often due to issues with your setup or how NumPy was 302s E installed. 302s E 302s E We have compiled some common reasons and troubleshooting tips at: 302s E 302s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 302s E 302s E Please note and check the following: 302s E 302s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 302s E * The NumPy version is: "1.26.4" 302s E 302s E and make sure that they are the versions you expect. 302s E Please carefully study the documentation linked above for further help. 302s E 302s E Original error was: No module named 'numpy.core._multiarray_umath' 302s 302s The above exception was the direct cause of the following exception: 302s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 302s return _bootstrap._gcd_import(name[level:], package, level) 302s testsuite/MDAnalysisTests/__init__.py:125: in 302s from MDAnalysisTests.util import ( 302s testsuite/MDAnalysisTests/util.py:41: in 302s from numpy.testing import assert_warns 302s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 302s raise ImportError(msg) from e 302s E ImportError: Error importing numpy: you should not try to import numpy from 302s E its source directory; please exit the numpy source tree, and relaunch 302s E your python interpreter from there. 302s _______ ERROR collecting testsuite/MDAnalysisTests/utils/test_failure.py _______ 302s ImportError while importing test module '/tmp/autopkgtest.vhk5Bq/build.ka4/src/testsuite/MDAnalysisTests/utils/test_failure.py'. 302s Hint: make sure your test modules/packages have valid Python names. 302s Traceback: 302s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 302s from . import multiarray 302s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 302s from . import overrides 302s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 302s from numpy.core._multiarray_umath import ( 302s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 302s 302s During handling of the above exception, another exception occurred: 302s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 302s from numpy.__config__ import show as show_config 302s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 302s from numpy.core._multiarray_umath import ( 302s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 302s raise ImportError(msg) 302s E ImportError: 302s E 302s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 302s E 302s E Importing the numpy C-extensions failed. This error can happen for 302s E many reasons, often due to issues with your setup or how NumPy was 302s E installed. 302s E 302s E We have compiled some common reasons and troubleshooting tips at: 302s E 302s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 302s E 302s E Please note and check the following: 302s E 302s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 302s E * The NumPy version is: "1.26.4" 302s E 302s E and make sure that they are the versions you expect. 302s E Please carefully study the documentation linked above for further help. 302s E 302s E Original error was: No module named 'numpy.core._multiarray_umath' 302s 302s The above exception was the direct cause of the following exception: 302s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 302s return _bootstrap._gcd_import(name[level:], package, level) 302s testsuite/MDAnalysisTests/__init__.py:125: in 302s from MDAnalysisTests.util import ( 302s testsuite/MDAnalysisTests/util.py:41: in 302s from numpy.testing import assert_warns 302s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 302s raise ImportError(msg) from e 302s E ImportError: Error importing numpy: you should not try to import numpy from 302s E its source directory; please exit the numpy source tree, and relaunch 302s E your python interpreter from there. 302s _______ ERROR collecting testsuite/MDAnalysisTests/utils/test_imports.py _______ 302s ImportError while importing test module '/tmp/autopkgtest.vhk5Bq/build.ka4/src/testsuite/MDAnalysisTests/utils/test_imports.py'. 302s Hint: make sure your test modules/packages have valid Python names. 302s Traceback: 302s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 302s from . import multiarray 302s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 302s from . import overrides 302s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 302s from numpy.core._multiarray_umath import ( 302s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 302s 302s During handling of the above exception, another exception occurred: 302s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 302s from numpy.__config__ import show as show_config 302s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 302s from numpy.core._multiarray_umath import ( 302s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 302s raise ImportError(msg) 302s E ImportError: 302s E 302s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 302s E 302s E Importing the numpy C-extensions failed. This error can happen for 302s E many reasons, often due to issues with your setup or how NumPy was 302s E installed. 302s E 302s E We have compiled some common reasons and troubleshooting tips at: 302s E 302s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 302s E 302s E Please note and check the following: 302s E 302s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 302s E * The NumPy version is: "1.26.4" 302s E 302s E and make sure that they are the versions you expect. 302s E Please carefully study the documentation linked above for further help. 302s E 302s E Original error was: No module named 'numpy.core._multiarray_umath' 302s 302s The above exception was the direct cause of the following exception: 302s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 302s return _bootstrap._gcd_import(name[level:], package, level) 302s testsuite/MDAnalysisTests/__init__.py:125: in 302s from MDAnalysisTests.util import ( 302s testsuite/MDAnalysisTests/util.py:41: in 302s from numpy.testing import assert_warns 302s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 302s raise ImportError(msg) from e 302s E ImportError: Error importing numpy: you should not try to import numpy from 302s E its source directory; please exit the numpy source tree, and relaunch 302s E your python interpreter from there. 302s _________ ERROR collecting testsuite/MDAnalysisTests/utils/test_log.py _________ 302s ImportError while importing test module '/tmp/autopkgtest.vhk5Bq/build.ka4/src/testsuite/MDAnalysisTests/utils/test_log.py'. 302s Hint: make sure your test modules/packages have valid Python names. 302s Traceback: 302s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 302s from . import multiarray 302s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 302s from . import overrides 302s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 302s from numpy.core._multiarray_umath import ( 302s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 302s 302s During handling of the above exception, another exception occurred: 302s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 302s from numpy.__config__ import show as show_config 302s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 302s from numpy.core._multiarray_umath import ( 302s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 302s raise ImportError(msg) 302s E ImportError: 302s E 302s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 302s E 302s E Importing the numpy C-extensions failed. This error can happen for 302s E many reasons, often due to issues with your setup or how NumPy was 302s E installed. 302s E 302s E We have compiled some common reasons and troubleshooting tips at: 302s E 302s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 302s E 302s E Please note and check the following: 302s E 302s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 302s E * The NumPy version is: "1.26.4" 302s E 302s E and make sure that they are the versions you expect. 302s E Please carefully study the documentation linked above for further help. 302s E 302s E Original error was: No module named 'numpy.core._multiarray_umath' 302s 302s The above exception was the direct cause of the following exception: 302s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 302s return _bootstrap._gcd_import(name[level:], package, level) 302s testsuite/MDAnalysisTests/__init__.py:125: in 302s from MDAnalysisTests.util import ( 302s testsuite/MDAnalysisTests/util.py:41: in 302s from numpy.testing import assert_warns 302s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 302s raise ImportError(msg) from e 302s E ImportError: Error importing numpy: you should not try to import numpy from 302s E its source directory; please exit the numpy source tree, and relaunch 302s E your python interpreter from there. 302s ________ ERROR collecting testsuite/MDAnalysisTests/utils/test_meta.py _________ 302s ImportError while importing test module '/tmp/autopkgtest.vhk5Bq/build.ka4/src/testsuite/MDAnalysisTests/utils/test_meta.py'. 302s Hint: make sure your test modules/packages have valid Python names. 302s Traceback: 302s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 302s from . import multiarray 302s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 302s from . import overrides 302s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 302s from numpy.core._multiarray_umath import ( 302s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 302s 302s During handling of the above exception, another exception occurred: 302s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 302s from numpy.__config__ import show as show_config 302s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 302s from numpy.core._multiarray_umath import ( 302s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 302s raise ImportError(msg) 302s E ImportError: 302s E 302s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 302s E 302s E Importing the numpy C-extensions failed. This error can happen for 302s E many reasons, often due to issues with your setup or how NumPy was 302s E installed. 302s E 302s E We have compiled some common reasons and troubleshooting tips at: 302s E 302s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 302s E 302s E Please note and check the following: 302s E 302s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 302s E * The NumPy version is: "1.26.4" 302s E 302s E and make sure that they are the versions you expect. 302s E Please carefully study the documentation linked above for further help. 302s E 302s E Original error was: No module named 'numpy.core._multiarray_umath' 302s 302s The above exception was the direct cause of the following exception: 302s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 302s return _bootstrap._gcd_import(name[level:], package, level) 302s testsuite/MDAnalysisTests/__init__.py:125: in 302s from MDAnalysisTests.util import ( 302s testsuite/MDAnalysisTests/util.py:41: in 302s from numpy.testing import assert_warns 302s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 302s raise ImportError(msg) from e 302s E ImportError: Error importing numpy: you should not try to import numpy from 302s E its source directory; please exit the numpy source tree, and relaunch 302s E your python interpreter from there. 302s ______ ERROR collecting testsuite/MDAnalysisTests/utils/test_modelling.py ______ 302s ImportError while importing test module '/tmp/autopkgtest.vhk5Bq/build.ka4/src/testsuite/MDAnalysisTests/utils/test_modelling.py'. 302s Hint: make sure your test modules/packages have valid Python names. 302s Traceback: 302s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 302s from . import multiarray 302s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 302s from . import overrides 302s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 302s from numpy.core._multiarray_umath import ( 302s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 302s 302s During handling of the above exception, another exception occurred: 302s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 302s from numpy.__config__ import show as show_config 302s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 302s from numpy.core._multiarray_umath import ( 302s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 302s raise ImportError(msg) 302s E ImportError: 302s E 302s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 302s E 302s E Importing the numpy C-extensions failed. This error can happen for 302s E many reasons, often due to issues with your setup or how NumPy was 302s E installed. 302s E 302s E We have compiled some common reasons and troubleshooting tips at: 302s E 302s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 302s E 302s E Please note and check the following: 302s E 302s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 302s E * The NumPy version is: "1.26.4" 302s E 302s E and make sure that they are the versions you expect. 302s E Please carefully study the documentation linked above for further help. 302s E 302s E Original error was: No module named 'numpy.core._multiarray_umath' 302s 302s The above exception was the direct cause of the following exception: 302s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 302s return _bootstrap._gcd_import(name[level:], package, level) 302s testsuite/MDAnalysisTests/__init__.py:125: in 302s from MDAnalysisTests.util import ( 302s testsuite/MDAnalysisTests/util.py:41: in 302s from numpy.testing import assert_warns 302s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 302s raise ImportError(msg) from e 302s E ImportError: Error importing numpy: you should not try to import numpy from 302s E its source directory; please exit the numpy source tree, and relaunch 302s E your python interpreter from there. 302s _____ ERROR collecting testsuite/MDAnalysisTests/utils/test_persistence.py _____ 302s ImportError while importing test module '/tmp/autopkgtest.vhk5Bq/build.ka4/src/testsuite/MDAnalysisTests/utils/test_persistence.py'. 302s Hint: make sure your test modules/packages have valid Python names. 302s Traceback: 302s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 302s from . import multiarray 302s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 302s from . import overrides 302s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 302s from numpy.core._multiarray_umath import ( 302s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 302s 302s During handling of the above exception, another exception occurred: 302s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 302s from numpy.__config__ import show as show_config 302s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 302s from numpy.core._multiarray_umath import ( 302s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 302s raise ImportError(msg) 302s E ImportError: 302s E 302s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 302s E 302s E Importing the numpy C-extensions failed. This error can happen for 302s E many reasons, often due to issues with your setup or how NumPy was 302s E installed. 302s E 302s E We have compiled some common reasons and troubleshooting tips at: 302s E 302s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 302s E 302s E Please note and check the following: 302s E 302s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 302s E * The NumPy version is: "1.26.4" 302s E 302s E and make sure that they are the versions you expect. 302s E Please carefully study the documentation linked above for further help. 302s E 302s E Original error was: No module named 'numpy.core._multiarray_umath' 302s 302s The above exception was the direct cause of the following exception: 302s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 302s return _bootstrap._gcd_import(name[level:], package, level) 302s testsuite/MDAnalysisTests/__init__.py:125: in 302s from MDAnalysisTests.util import ( 302s testsuite/MDAnalysisTests/util.py:41: in 302s from numpy.testing import assert_warns 302s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 302s raise ImportError(msg) from e 302s E ImportError: Error importing numpy: you should not try to import numpy from 302s E its source directory; please exit the numpy source tree, and relaunch 302s E your python interpreter from there. 302s ______ ERROR collecting testsuite/MDAnalysisTests/utils/test_pickleio.py _______ 302s ImportError while importing test module '/tmp/autopkgtest.vhk5Bq/build.ka4/src/testsuite/MDAnalysisTests/utils/test_pickleio.py'. 302s Hint: make sure your test modules/packages have valid Python names. 302s Traceback: 302s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 302s from . import multiarray 302s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 302s from . import overrides 302s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 302s from numpy.core._multiarray_umath import ( 302s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 302s 302s During handling of the above exception, another exception occurred: 302s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 302s from numpy.__config__ import show as show_config 302s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 302s from numpy.core._multiarray_umath import ( 302s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 302s raise ImportError(msg) 302s E ImportError: 302s E 302s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 302s E 302s E Importing the numpy C-extensions failed. This error can happen for 302s E many reasons, often due to issues with your setup or how NumPy was 302s E installed. 302s E 302s E We have compiled some common reasons and troubleshooting tips at: 302s E 302s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 302s E 302s E Please note and check the following: 302s E 302s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 302s E * The NumPy version is: "1.26.4" 302s E 302s E and make sure that they are the versions you expect. 302s E Please carefully study the documentation linked above for further help. 302s E 302s E Original error was: No module named 'numpy.core._multiarray_umath' 302s 302s The above exception was the direct cause of the following exception: 302s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 302s return _bootstrap._gcd_import(name[level:], package, level) 302s testsuite/MDAnalysisTests/__init__.py:125: in 302s from MDAnalysisTests.util import ( 302s testsuite/MDAnalysisTests/util.py:41: in 302s from numpy.testing import assert_warns 302s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 302s raise ImportError(msg) from e 302s E ImportError: Error importing numpy: you should not try to import numpy from 302s E its source directory; please exit the numpy source tree, and relaunch 302s E your python interpreter from there. 302s _______ ERROR collecting testsuite/MDAnalysisTests/utils/test_qcprot.py ________ 302s ImportError while importing test module '/tmp/autopkgtest.vhk5Bq/build.ka4/src/testsuite/MDAnalysisTests/utils/test_qcprot.py'. 302s Hint: make sure your test modules/packages have valid Python names. 302s Traceback: 302s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 302s from . import multiarray 302s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 302s from . import overrides 302s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 302s from numpy.core._multiarray_umath import ( 302s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 302s 302s During handling of the above exception, another exception occurred: 302s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 302s from numpy.__config__ import show as show_config 302s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 302s from numpy.core._multiarray_umath import ( 302s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 302s raise ImportError(msg) 302s E ImportError: 302s E 302s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 302s E 302s E Importing the numpy C-extensions failed. This error can happen for 302s E many reasons, often due to issues with your setup or how NumPy was 302s E installed. 302s E 302s E We have compiled some common reasons and troubleshooting tips at: 302s E 302s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 302s E 302s E Please note and check the following: 302s E 302s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 302s E * The NumPy version is: "1.26.4" 302s E 302s E and make sure that they are the versions you expect. 302s E Please carefully study the documentation linked above for further help. 302s E 302s E Original error was: No module named 'numpy.core._multiarray_umath' 302s 302s The above exception was the direct cause of the following exception: 302s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 302s return _bootstrap._gcd_import(name[level:], package, level) 302s testsuite/MDAnalysisTests/__init__.py:125: in 302s from MDAnalysisTests.util import ( 302s testsuite/MDAnalysisTests/util.py:41: in 302s from numpy.testing import assert_warns 302s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 302s raise ImportError(msg) from e 302s E ImportError: Error importing numpy: you should not try to import numpy from 302s E its source directory; please exit the numpy source tree, and relaunch 302s E your python interpreter from there. 302s _____ ERROR collecting testsuite/MDAnalysisTests/utils/test_selections.py ______ 302s ImportError while importing test module '/tmp/autopkgtest.vhk5Bq/build.ka4/src/testsuite/MDAnalysisTests/utils/test_selections.py'. 302s Hint: make sure your test modules/packages have valid Python names. 302s Traceback: 302s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 302s from . import multiarray 302s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 302s from . import overrides 302s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 302s from numpy.core._multiarray_umath import ( 302s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 302s 302s During handling of the above exception, another exception occurred: 302s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 302s from numpy.__config__ import show as show_config 302s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 302s from numpy.core._multiarray_umath import ( 302s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 302s raise ImportError(msg) 302s E ImportError: 302s E 302s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 302s E 302s E Importing the numpy C-extensions failed. This error can happen for 302s E many reasons, often due to issues with your setup or how NumPy was 302s E installed. 302s E 302s E We have compiled some common reasons and troubleshooting tips at: 302s E 302s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 302s E 302s E Please note and check the following: 302s E 302s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 302s E * The NumPy version is: "1.26.4" 302s E 302s E and make sure that they are the versions you expect. 302s E Please carefully study the documentation linked above for further help. 302s E 302s E Original error was: No module named 'numpy.core._multiarray_umath' 302s 302s The above exception was the direct cause of the following exception: 302s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 302s return _bootstrap._gcd_import(name[level:], package, level) 302s testsuite/MDAnalysisTests/__init__.py:125: in 302s from MDAnalysisTests.util import ( 302s testsuite/MDAnalysisTests/util.py:41: in 302s from numpy.testing import assert_warns 302s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 302s raise ImportError(msg) from e 302s E ImportError: Error importing numpy: you should not try to import numpy from 302s E its source directory; please exit the numpy source tree, and relaunch 302s E your python interpreter from there. 302s ______ ERROR collecting testsuite/MDAnalysisTests/utils/test_streamio.py _______ 302s ImportError while importing test module '/tmp/autopkgtest.vhk5Bq/build.ka4/src/testsuite/MDAnalysisTests/utils/test_streamio.py'. 302s Hint: make sure your test modules/packages have valid Python names. 302s Traceback: 302s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 302s from . import multiarray 302s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 302s from . import overrides 302s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 302s from numpy.core._multiarray_umath import ( 302s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 302s 302s During handling of the above exception, another exception occurred: 302s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 302s from numpy.__config__ import show as show_config 302s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 302s from numpy.core._multiarray_umath import ( 302s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 302s raise ImportError(msg) 302s E ImportError: 302s E 302s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 302s E 302s E Importing the numpy C-extensions failed. This error can happen for 302s E many reasons, often due to issues with your setup or how NumPy was 302s E installed. 302s E 302s E We have compiled some common reasons and troubleshooting tips at: 302s E 302s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 302s E 302s E Please note and check the following: 302s E 302s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 302s E * The NumPy version is: "1.26.4" 302s E 302s E and make sure that they are the versions you expect. 302s E Please carefully study the documentation linked above for further help. 302s E 302s E Original error was: No module named 'numpy.core._multiarray_umath' 302s 302s The above exception was the direct cause of the following exception: 302s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 302s return _bootstrap._gcd_import(name[level:], package, level) 302s testsuite/MDAnalysisTests/__init__.py:125: in 302s from MDAnalysisTests.util import ( 302s testsuite/MDAnalysisTests/util.py:41: in 302s from numpy.testing import assert_warns 302s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 302s raise ImportError(msg) from e 302s E ImportError: Error importing numpy: you should not try to import numpy from 302s E its source directory; please exit the numpy source tree, and relaunch 302s E your python interpreter from there. 302s ___ ERROR collecting testsuite/MDAnalysisTests/utils/test_transformations.py ___ 302s ImportError while importing test module '/tmp/autopkgtest.vhk5Bq/build.ka4/src/testsuite/MDAnalysisTests/utils/test_transformations.py'. 302s Hint: make sure your test modules/packages have valid Python names. 302s Traceback: 302s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 302s from . import multiarray 302s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 302s from . import overrides 302s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 302s from numpy.core._multiarray_umath import ( 302s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 302s 302s During handling of the above exception, another exception occurred: 302s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 302s from numpy.__config__ import show as show_config 302s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 302s from numpy.core._multiarray_umath import ( 302s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 302s raise ImportError(msg) 302s E ImportError: 302s E 302s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 302s E 302s E Importing the numpy C-extensions failed. This error can happen for 302s E many reasons, often due to issues with your setup or how NumPy was 302s E installed. 302s E 302s E We have compiled some common reasons and troubleshooting tips at: 302s E 302s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 302s E 302s E Please note and check the following: 302s E 302s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 302s E * The NumPy version is: "1.26.4" 302s E 302s E and make sure that they are the versions you expect. 302s E Please carefully study the documentation linked above for further help. 302s E 302s E Original error was: No module named 'numpy.core._multiarray_umath' 302s 302s The above exception was the direct cause of the following exception: 302s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 302s return _bootstrap._gcd_import(name[level:], package, level) 302s testsuite/MDAnalysisTests/__init__.py:125: in 302s from MDAnalysisTests.util import ( 302s testsuite/MDAnalysisTests/util.py:41: in 302s from numpy.testing import assert_warns 302s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 302s raise ImportError(msg) from e 302s E ImportError: Error importing numpy: you should not try to import numpy from 302s E its source directory; please exit the numpy source tree, and relaunch 302s E your python interpreter from there. 302s ________ ERROR collecting testsuite/MDAnalysisTests/utils/test_units.py ________ 302s ImportError while importing test module '/tmp/autopkgtest.vhk5Bq/build.ka4/src/testsuite/MDAnalysisTests/utils/test_units.py'. 302s Hint: make sure your test modules/packages have valid Python names. 302s Traceback: 302s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 302s from . import multiarray 302s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 302s from . import overrides 302s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 302s from numpy.core._multiarray_umath import ( 302s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 302s 302s During handling of the above exception, another exception occurred: 302s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 302s from numpy.__config__ import show as show_config 302s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 302s from numpy.core._multiarray_umath import ( 302s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 302s raise ImportError(msg) 302s E ImportError: 302s E 302s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 302s E 302s E Importing the numpy C-extensions failed. This error can happen for 302s E many reasons, often due to issues with your setup or how NumPy was 302s E installed. 302s E 302s E We have compiled some common reasons and troubleshooting tips at: 302s E 302s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 302s E 302s E Please note and check the following: 302s E 302s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 302s E * The NumPy version is: "1.26.4" 302s E 302s E and make sure that they are the versions you expect. 302s E Please carefully study the documentation linked above for further help. 302s E 302s E Original error was: No module named 'numpy.core._multiarray_umath' 302s 302s The above exception was the direct cause of the following exception: 302s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 302s return _bootstrap._gcd_import(name[level:], package, level) 302s testsuite/MDAnalysisTests/__init__.py:125: in 302s from MDAnalysisTests.util import ( 302s testsuite/MDAnalysisTests/util.py:41: in 302s from numpy.testing import assert_warns 302s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 302s raise ImportError(msg) from e 302s E ImportError: Error importing numpy: you should not try to import numpy from 302s E its source directory; please exit the numpy source tree, and relaunch 302s E your python interpreter from there. 302s _ ERROR collecting testsuite/MDAnalysisTests/visualization/test_streamlines.py _ 302s ImportError while importing test module '/tmp/autopkgtest.vhk5Bq/build.ka4/src/testsuite/MDAnalysisTests/visualization/test_streamlines.py'. 302s Hint: make sure your test modules/packages have valid Python names. 302s Traceback: 302s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 302s from . import multiarray 302s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 302s from . import overrides 302s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 302s from numpy.core._multiarray_umath import ( 302s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 302s 302s During handling of the above exception, another exception occurred: 302s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 302s from numpy.__config__ import show as show_config 302s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 302s from numpy.core._multiarray_umath import ( 302s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 302s raise ImportError(msg) 302s E ImportError: 302s E 302s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 302s E 302s E Importing the numpy C-extensions failed. This error can happen for 302s E many reasons, often due to issues with your setup or how NumPy was 302s E installed. 302s E 302s E We have compiled some common reasons and troubleshooting tips at: 302s E 302s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 302s E 302s E Please note and check the following: 302s E 302s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 302s E * The NumPy version is: "1.26.4" 302s E 302s E and make sure that they are the versions you expect. 302s E Please carefully study the documentation linked above for further help. 302s E 302s E Original error was: No module named 'numpy.core._multiarray_umath' 302s 302s The above exception was the direct cause of the following exception: 302s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 302s return _bootstrap._gcd_import(name[level:], package, level) 302s testsuite/MDAnalysisTests/__init__.py:125: in 302s from MDAnalysisTests.util import ( 302s testsuite/MDAnalysisTests/util.py:41: in 302s from numpy.testing import assert_warns 302s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 302s raise ImportError(msg) from e 302s E ImportError: Error importing numpy: you should not try to import numpy from 302s E its source directory; please exit the numpy source tree, and relaunch 302s E your python interpreter from there. 302s =========================== short test summary info ============================ 302s ERROR testsuite/MDAnalysisTests/analysis/test_align.py 302s ERROR testsuite/MDAnalysisTests/analysis/test_atomicdistances.py 302s ERROR testsuite/MDAnalysisTests/analysis/test_base.py 302s ERROR testsuite/MDAnalysisTests/analysis/test_bat.py 302s ERROR testsuite/MDAnalysisTests/analysis/test_contacts.py 302s ERROR testsuite/MDAnalysisTests/analysis/test_data.py 302s ERROR testsuite/MDAnalysisTests/analysis/test_density.py 302s ERROR testsuite/MDAnalysisTests/analysis/test_dielectric.py 302s ERROR testsuite/MDAnalysisTests/analysis/test_diffusionmap.py 302s ERROR testsuite/MDAnalysisTests/analysis/test_dihedrals.py 302s ERROR testsuite/MDAnalysisTests/analysis/test_distances.py 302s ERROR testsuite/MDAnalysisTests/analysis/test_encore.py 302s ERROR testsuite/MDAnalysisTests/analysis/test_gnm.py 302s ERROR testsuite/MDAnalysisTests/analysis/test_helix_analysis.py 302s ERROR testsuite/MDAnalysisTests/analysis/test_hole2.py 302s ERROR testsuite/MDAnalysisTests/analysis/test_hydrogenbondautocorrel.py 302s ERROR testsuite/MDAnalysisTests/analysis/test_hydrogenbondautocorrel_deprecated.py 302s ERROR testsuite/MDAnalysisTests/analysis/test_hydrogenbonds_analysis.py 302s ERROR testsuite/MDAnalysisTests/analysis/test_leaflet.py 302s ERROR testsuite/MDAnalysisTests/analysis/test_lineardensity.py 302s ERROR testsuite/MDAnalysisTests/analysis/test_msd.py 302s ERROR testsuite/MDAnalysisTests/analysis/test_nucleicacids.py 302s ERROR testsuite/MDAnalysisTests/analysis/test_nuclinfo.py 302s ERROR testsuite/MDAnalysisTests/analysis/test_pca.py 302s ERROR testsuite/MDAnalysisTests/analysis/test_persistencelength.py 302s ERROR testsuite/MDAnalysisTests/analysis/test_psa.py 302s ERROR testsuite/MDAnalysisTests/analysis/test_rdf.py 302s ERROR testsuite/MDAnalysisTests/analysis/test_rdf_s.py 302s ERROR testsuite/MDAnalysisTests/analysis/test_rms.py 302s ERROR testsuite/MDAnalysisTests/analysis/test_waterdynamics.py 302s ERROR testsuite/MDAnalysisTests/analysis/test_wbridge.py 302s ERROR testsuite/MDAnalysisTests/auxiliary/test_core.py 302s ERROR testsuite/MDAnalysisTests/auxiliary/test_edr.py 302s ERROR testsuite/MDAnalysisTests/auxiliary/test_xvg.py 302s ERROR testsuite/MDAnalysisTests/converters/test_base.py 302s ERROR testsuite/MDAnalysisTests/converters/test_openmm.py 302s ERROR testsuite/MDAnalysisTests/converters/test_openmm_parser.py 302s ERROR testsuite/MDAnalysisTests/converters/test_parmed.py 302s ERROR testsuite/MDAnalysisTests/converters/test_parmed_parser.py 302s ERROR testsuite/MDAnalysisTests/converters/test_rdkit.py 302s ERROR testsuite/MDAnalysisTests/converters/test_rdkit_parser.py 302s ERROR testsuite/MDAnalysisTests/coordinates/test_amber_inpcrd.py 302s ERROR testsuite/MDAnalysisTests/coordinates/test_chainreader.py 302s ERROR testsuite/MDAnalysisTests/coordinates/test_chemfiles.py 302s ERROR testsuite/MDAnalysisTests/coordinates/test_copying.py 302s ERROR testsuite/MDAnalysisTests/coordinates/test_crd.py 302s ERROR testsuite/MDAnalysisTests/coordinates/test_dcd.py 302s ERROR testsuite/MDAnalysisTests/coordinates/test_dlpoly.py 302s ERROR testsuite/MDAnalysisTests/coordinates/test_dms.py 302s ERROR testsuite/MDAnalysisTests/coordinates/test_fhiaims.py 302s ERROR testsuite/MDAnalysisTests/coordinates/test_gms.py 302s ERROR testsuite/MDAnalysisTests/coordinates/test_gro.py 302s ERROR testsuite/MDAnalysisTests/coordinates/test_gsd.py 302s ERROR testsuite/MDAnalysisTests/coordinates/test_h5md.py 302s ERROR testsuite/MDAnalysisTests/coordinates/test_lammps.py 302s ERROR testsuite/MDAnalysisTests/coordinates/test_memory.py 302s ERROR testsuite/MDAnalysisTests/coordinates/test_mmtf.py 302s ERROR testsuite/MDAnalysisTests/coordinates/test_mol2.py 302s ERROR testsuite/MDAnalysisTests/coordinates/test_namdbin.py 302s ERROR testsuite/MDAnalysisTests/coordinates/test_netcdf.py 302s ERROR testsuite/MDAnalysisTests/coordinates/test_null.py 302s ERROR testsuite/MDAnalysisTests/coordinates/test_pdb.py 302s ERROR testsuite/MDAnalysisTests/coordinates/test_pdbqt.py 302s ERROR testsuite/MDAnalysisTests/coordinates/test_pqr.py 302s ERROR testsuite/MDAnalysisTests/coordinates/test_reader_api.py 302s ERROR testsuite/MDAnalysisTests/coordinates/test_timestep_api.py 302s ERROR testsuite/MDAnalysisTests/coordinates/test_tng.py 302s ERROR testsuite/MDAnalysisTests/coordinates/test_trc.py 302s ERROR testsuite/MDAnalysisTests/coordinates/test_trj.py 302s ERROR testsuite/MDAnalysisTests/coordinates/test_trz.py 302s ERROR testsuite/MDAnalysisTests/coordinates/test_txyz.py 302s ERROR testsuite/MDAnalysisTests/coordinates/test_windows.py 302s ERROR testsuite/MDAnalysisTests/coordinates/test_writer_api.py 302s ERROR testsuite/MDAnalysisTests/coordinates/test_writer_registration.py 302s ERROR testsuite/MDAnalysisTests/coordinates/test_xdr.py 302s ERROR testsuite/MDAnalysisTests/coordinates/test_xyz.py 302s ERROR testsuite/MDAnalysisTests/core/test_accessors.py 302s ERROR testsuite/MDAnalysisTests/core/test_accumulate.py 302s ERROR testsuite/MDAnalysisTests/core/test_atom.py 302s ERROR testsuite/MDAnalysisTests/core/test_atomgroup.py 302s ERROR testsuite/MDAnalysisTests/core/test_atomselections.py 302s ERROR testsuite/MDAnalysisTests/core/test_copying.py 302s ERROR testsuite/MDAnalysisTests/core/test_fragments.py 302s ERROR testsuite/MDAnalysisTests/core/test_group_traj_access.py 302s ERROR testsuite/MDAnalysisTests/core/test_groups.py 302s ERROR testsuite/MDAnalysisTests/core/test_index_dtype.py 302s ERROR testsuite/MDAnalysisTests/core/test_requires.py 302s ERROR testsuite/MDAnalysisTests/core/test_residue.py 302s ERROR testsuite/MDAnalysisTests/core/test_residuegroup.py 302s ERROR testsuite/MDAnalysisTests/core/test_segment.py 302s ERROR testsuite/MDAnalysisTests/core/test_segmentgroup.py 302s ERROR testsuite/MDAnalysisTests/core/test_topology.py 302s ERROR testsuite/MDAnalysisTests/core/test_topologyattrs.py 302s ERROR testsuite/MDAnalysisTests/core/test_topologyobjects.py 302s ERROR testsuite/MDAnalysisTests/core/test_universe.py 302s ERROR testsuite/MDAnalysisTests/core/test_unwrap.py 302s ERROR testsuite/MDAnalysisTests/core/test_updating_atomgroup.py 302s ERROR testsuite/MDAnalysisTests/core/test_wrap.py 302s ERROR testsuite/MDAnalysisTests/formats/test_libdcd.py 302s ERROR testsuite/MDAnalysisTests/formats/test_libmdaxdr.py 302s ERROR testsuite/MDAnalysisTests/import/test_import.py 302s ERROR testsuite/MDAnalysisTests/lib/test_augment.py 302s ERROR testsuite/MDAnalysisTests/lib/test_cutil.py 302s ERROR testsuite/MDAnalysisTests/lib/test_distances.py 302s ERROR testsuite/MDAnalysisTests/lib/test_log.py 302s ERROR testsuite/MDAnalysisTests/lib/test_neighborsearch.py 302s ERROR testsuite/MDAnalysisTests/lib/test_nsgrid.py 302s ERROR testsuite/MDAnalysisTests/lib/test_pkdtree.py 302s ERROR testsuite/MDAnalysisTests/lib/test_qcprot.py 302s ERROR testsuite/MDAnalysisTests/lib/test_util.py 302s ERROR testsuite/MDAnalysisTests/parallelism/test_multiprocessing.py 302s ERROR testsuite/MDAnalysisTests/parallelism/test_pickle_transformation.py 302s ERROR testsuite/MDAnalysisTests/test_api.py 302s ERROR testsuite/MDAnalysisTests/topology/test_altloc.py 302s ERROR testsuite/MDAnalysisTests/topology/test_crd.py 302s ERROR testsuite/MDAnalysisTests/topology/test_dlpoly.py 302s ERROR testsuite/MDAnalysisTests/topology/test_dms.py 302s ERROR testsuite/MDAnalysisTests/topology/test_fhiaims.py 302s ERROR testsuite/MDAnalysisTests/topology/test_gms.py 302s ERROR testsuite/MDAnalysisTests/topology/test_gro.py 302s ERROR testsuite/MDAnalysisTests/topology/test_gsd.py 302s ERROR testsuite/MDAnalysisTests/topology/test_guessers.py 302s ERROR testsuite/MDAnalysisTests/topology/test_hoomdxml.py 302s ERROR testsuite/MDAnalysisTests/topology/test_itp.py 302s ERROR testsuite/MDAnalysisTests/topology/test_lammpsdata.py 302s ERROR testsuite/MDAnalysisTests/topology/test_minimal.py 302s ERROR testsuite/MDAnalysisTests/topology/test_mmtf.py 302s ERROR testsuite/MDAnalysisTests/topology/test_mol2.py 302s ERROR testsuite/MDAnalysisTests/topology/test_pdb.py 302s ERROR testsuite/MDAnalysisTests/topology/test_pdbqt.py 302s ERROR testsuite/MDAnalysisTests/topology/test_pqr.py 302s ERROR testsuite/MDAnalysisTests/topology/test_psf.py 302s ERROR testsuite/MDAnalysisTests/topology/test_top.py 302s ERROR testsuite/MDAnalysisTests/topology/test_topology_base.py 302s ERROR testsuite/MDAnalysisTests/topology/test_topology_str_types.py 302s ERROR testsuite/MDAnalysisTests/topology/test_tprparser.py 302s ERROR testsuite/MDAnalysisTests/topology/test_txyz.py 302s ERROR testsuite/MDAnalysisTests/topology/test_xpdb.py 302s ERROR testsuite/MDAnalysisTests/topology/test_xyz.py 302s ERROR testsuite/MDAnalysisTests/transformations/test_base.py 302s ERROR testsuite/MDAnalysisTests/transformations/test_boxdimensions.py 302s ERROR testsuite/MDAnalysisTests/transformations/test_fit.py 302s ERROR testsuite/MDAnalysisTests/transformations/test_nojump.py 302s ERROR testsuite/MDAnalysisTests/transformations/test_positionaveraging.py 302s ERROR testsuite/MDAnalysisTests/transformations/test_rotate.py 302s ERROR testsuite/MDAnalysisTests/transformations/test_translate.py 302s ERROR testsuite/MDAnalysisTests/transformations/test_wrap.py 302s ERROR testsuite/MDAnalysisTests/utils/test_authors.py 302s ERROR testsuite/MDAnalysisTests/utils/test_datafiles.py 302s ERROR testsuite/MDAnalysisTests/utils/test_duecredit.py 302s ERROR testsuite/MDAnalysisTests/utils/test_failure.py 302s ERROR testsuite/MDAnalysisTests/utils/test_imports.py 302s ERROR testsuite/MDAnalysisTests/utils/test_log.py 302s ERROR testsuite/MDAnalysisTests/utils/test_meta.py 302s ERROR testsuite/MDAnalysisTests/utils/test_modelling.py 302s ERROR testsuite/MDAnalysisTests/utils/test_persistence.py 302s ERROR testsuite/MDAnalysisTests/utils/test_pickleio.py 302s ERROR testsuite/MDAnalysisTests/utils/test_qcprot.py 302s ERROR testsuite/MDAnalysisTests/utils/test_selections.py 302s ERROR testsuite/MDAnalysisTests/utils/test_streamio.py 302s ERROR testsuite/MDAnalysisTests/utils/test_transformations.py 302s ERROR testsuite/MDAnalysisTests/utils/test_units.py 302s ERROR testsuite/MDAnalysisTests/visualization/test_streamlines.py 302s !!!!!!!!!!!!!!!!!! Interrupted: 163 errors during collection !!!!!!!!!!!!!!!!!!! 302s ============================= 163 errors in 5.92s ============================== 302s autopkgtest [18:50:45]: test test-mdanalysis: -----------------------] 303s test-mdanalysis FAIL non-zero exit status 2 303s autopkgtest [18:50:46]: test test-mdanalysis: - - - - - - - - - - results - - - - - - - - - - 303s autopkgtest [18:50:46]: @@@@@@@@@@@@@@@@@@@@ summary 303s test-mdanalysis FAIL non-zero exit status 2 308s virt: nova [W] Using flock in prodstack6-ppc64el 308s virt: Creating nova instance adt-plucky-ppc64el-mdanalysis-20241113-182851-juju-7f2275-prod-proposed-migration-environment-2-7d0ccadb-7581-42b2-833b-08a143c42dee from image adt/ubuntu-plucky-ppc64el-server-20241113.img (UUID 0c5715b6-5cca-4485-b8bf-b85dfd917a5f)...