0s autopkgtest [15:00:15]: starting date and time: 2025-02-21 15:00:15+0000 0s autopkgtest [15:00:15]: git checkout: 325255d2 Merge branch 'pin-any-arch' into 'ubuntu/production' 0s autopkgtest [15:00:15]: host juju-7f2275-prod-proposed-migration-environment-20; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.ki3huf6o/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:build-essential --apt-upgrade libslow5lib --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=build-essential/12.12 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest-ppc64el --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-20@bos03-ppc64el-20.secgroup --name adt-plucky-ppc64el-libslow5lib-20250221-144035-juju-7f2275-prod-proposed-migration-environment-20-0ac67be6-75d1-4dc1-b22e-55e0ef5e9353 --image adt/ubuntu-plucky-ppc64el-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-20 --net-id=net_prod-proposed-migration-ppc64el -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,keyserver.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com,radosgw.ps5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/ 80s autopkgtest [15:01:35]: testbed dpkg architecture: ppc64el 80s autopkgtest [15:01:35]: testbed apt version: 2.9.30ubuntu1 81s autopkgtest [15:01:36]: @@@@@@@@@@@@@@@@@@@@ test bed setup 81s autopkgtest [15:01:36]: testbed release detected to be: None 81s autopkgtest [15:01:36]: updating testbed package index (apt update) 82s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease [110 kB] 82s Hit:2 http://ftpmaster.internal/ubuntu plucky InRelease 82s Hit:3 http://ftpmaster.internal/ubuntu plucky-updates InRelease 82s Hit:4 http://ftpmaster.internal/ubuntu plucky-security InRelease 82s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/universe Sources [710 kB] 82s Get:6 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse Sources [14.8 kB] 82s Get:7 http://ftpmaster.internal/ubuntu plucky-proposed/restricted Sources [3120 B] 82s Get:8 http://ftpmaster.internal/ubuntu plucky-proposed/main Sources [88.5 kB] 82s Get:9 http://ftpmaster.internal/ubuntu plucky-proposed/main ppc64el Packages [136 kB] 82s Get:10 http://ftpmaster.internal/ubuntu plucky-proposed/restricted ppc64el Packages [760 B] 82s Get:11 http://ftpmaster.internal/ubuntu plucky-proposed/universe ppc64el Packages [648 kB] 82s Get:12 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse ppc64el Packages [4908 B] 83s Fetched 1716 kB in 1s (1660 kB/s) 84s Reading package lists... 84s Reading package lists... 85s Building dependency tree... 85s Reading state information... 85s Calculating upgrade... 85s Calculating upgrade... 85s The following packages will be upgraded: 85s apparmor apport apport-core-dump-handler base-files cloud-init 85s cloud-init-base gcc-14-base libapparmor1 motd-news-config python3-apport 85s python3-problem-report 85s 11 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 85s Need to get 1839 kB of archives. 85s After this operation, 18.4 kB of additional disk space will be used. 85s Get:1 http://ftpmaster.internal/ubuntu plucky/main ppc64el motd-news-config all 13.6ubuntu1 [5168 B] 85s Get:2 http://ftpmaster.internal/ubuntu plucky/main ppc64el base-files ppc64el 13.6ubuntu1 [75.6 kB] 85s Get:3 http://ftpmaster.internal/ubuntu plucky/main ppc64el python3-problem-report all 2.31.0+git20250220-0ubuntu1 [26.0 kB] 85s Get:4 http://ftpmaster.internal/ubuntu plucky/main ppc64el python3-apport all 2.31.0+git20250220-0ubuntu1 [93.5 kB] 85s Get:5 http://ftpmaster.internal/ubuntu plucky/main ppc64el apport-core-dump-handler all 2.31.0+git20250220-0ubuntu1 [18.7 kB] 85s Get:6 http://ftpmaster.internal/ubuntu plucky/main ppc64el apport all 2.31.0+git20250220-0ubuntu1 [83.1 kB] 85s Get:7 http://ftpmaster.internal/ubuntu plucky/main ppc64el gcc-14-base ppc64el 14.2.0-17ubuntu3 [53.6 kB] 85s Get:8 http://ftpmaster.internal/ubuntu plucky/main ppc64el libapparmor1 ppc64el 4.1.0~beta5-0ubuntu5 [58.8 kB] 85s Get:9 http://ftpmaster.internal/ubuntu plucky/main ppc64el apparmor ppc64el 4.1.0~beta5-0ubuntu5 [806 kB] 86s Get:10 http://ftpmaster.internal/ubuntu plucky/main ppc64el cloud-init-base all 25.1-0ubuntu1 [616 kB] 86s Get:11 http://ftpmaster.internal/ubuntu plucky/main ppc64el cloud-init all 25.1-0ubuntu1 [2088 B] 86s Preconfiguring packages ... 86s Fetched 1839 kB in 1s (2720 kB/s) 86s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 106370 files and directories currently installed.) 86s Preparing to unpack .../motd-news-config_13.6ubuntu1_all.deb ... 86s Unpacking motd-news-config (13.6ubuntu1) over (13.5ubuntu3) ... 86s Preparing to unpack .../base-files_13.6ubuntu1_ppc64el.deb ... 87s Unpacking base-files (13.6ubuntu1) over (13.5ubuntu3) ... 87s Setting up base-files (13.6ubuntu1) ... 87s Updating /root/.profile to current default. 88s motd-news.service is a disabled or a static unit not running, not starting it. 88s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 106370 files and directories currently installed.) 88s Preparing to unpack .../0-python3-problem-report_2.31.0+git20250220-0ubuntu1_all.deb ... 88s /usr/bin/py3clean:101: DeprecationWarning: glob.glob1 is deprecated and will be removed in Python 3.15. Use glob.glob and pass a directory to its root_dir argument instead. 88s for fn in glob1(directory, "%s.*" % fname): 88s Unpacking python3-problem-report (2.31.0+git20250220-0ubuntu1) over (2.31.0-0ubuntu5) ... 88s Preparing to unpack .../1-python3-apport_2.31.0+git20250220-0ubuntu1_all.deb ... 88s /usr/bin/py3clean:101: DeprecationWarning: glob.glob1 is deprecated and will be removed in Python 3.15. Use glob.glob and pass a directory to its root_dir argument instead. 88s for fn in glob1(directory, "%s.*" % fname): 88s Unpacking python3-apport (2.31.0+git20250220-0ubuntu1) over (2.31.0-0ubuntu5) ... 88s Preparing to unpack .../2-apport-core-dump-handler_2.31.0+git20250220-0ubuntu1_all.deb ... 88s Unpacking apport-core-dump-handler (2.31.0+git20250220-0ubuntu1) over (2.31.0-0ubuntu5) ... 88s Preparing to unpack .../3-apport_2.31.0+git20250220-0ubuntu1_all.deb ... 88s Unpacking apport (2.31.0+git20250220-0ubuntu1) over (2.31.0-0ubuntu5) ... 88s Preparing to unpack .../4-gcc-14-base_14.2.0-17ubuntu3_ppc64el.deb ... 88s Unpacking gcc-14-base:ppc64el (14.2.0-17ubuntu3) over (14.2.0-17ubuntu1) ... 88s Preparing to unpack .../5-libapparmor1_4.1.0~beta5-0ubuntu5_ppc64el.deb ... 88s Unpacking libapparmor1:ppc64el (4.1.0~beta5-0ubuntu5) over (4.1.0~beta5-0ubuntu4) ... 88s Preparing to unpack .../6-apparmor_4.1.0~beta5-0ubuntu5_ppc64el.deb ... 88s Unpacking apparmor (4.1.0~beta5-0ubuntu5) over (4.1.0~beta5-0ubuntu4) ... 89s Preparing to unpack .../7-cloud-init-base_25.1-0ubuntu1_all.deb ... 89s /usr/bin/py3clean:101: DeprecationWarning: glob.glob1 is deprecated and will be removed in Python 3.15. Use glob.glob and pass a directory to its root_dir argument instead. 89s for fn in glob1(directory, "%s.*" % fname): 89s Unpacking cloud-init-base (25.1-0ubuntu1) over (25.1~3geb1965a4-0ubuntu1) ... 89s Preparing to unpack .../8-cloud-init_25.1-0ubuntu1_all.deb ... 89s Unpacking cloud-init (25.1-0ubuntu1) over (25.1~3geb1965a4-0ubuntu1) ... 89s Setting up motd-news-config (13.6ubuntu1) ... 89s Setting up libapparmor1:ppc64el (4.1.0~beta5-0ubuntu5) ... 89s Setting up gcc-14-base:ppc64el (14.2.0-17ubuntu3) ... 89s Setting up python3-problem-report (2.31.0+git20250220-0ubuntu1) ... 89s Setting up cloud-init-base (25.1-0ubuntu1) ... 91s Setting up python3-apport (2.31.0+git20250220-0ubuntu1) ... 91s Setting up apparmor (4.1.0~beta5-0ubuntu5) ... 91s Installing new version of config file /etc/apparmor.d/fusermount3 ... 92s Reloading AppArmor profiles 94s Setting up cloud-init (25.1-0ubuntu1) ... 94s Setting up apport-core-dump-handler (2.31.0+git20250220-0ubuntu1) ... 95s Setting up apport (2.31.0+git20250220-0ubuntu1) ... 96s apport-autoreport.service is a disabled or a static unit not running, not starting it. 96s Processing triggers for plymouth-theme-ubuntu-text (24.004.60-2ubuntu5) ... 96s Processing triggers for install-info (7.1.1-1) ... 96s Processing triggers for libc-bin (2.40-4ubuntu1) ... 96s Processing triggers for rsyslog (8.2412.0-2ubuntu1) ... 96s Processing triggers for systemd (257.2-3ubuntu1) ... 96s Processing triggers for man-db (2.13.0-1) ... 98s Processing triggers for initramfs-tools (0.145ubuntu2) ... 98s update-initramfs: Generating /boot/initrd.img-6.12.0-15-generic 98s W: No lz4 in /usr/bin:/sbin:/bin, using gzip 107s Reading package lists... 107s Building dependency tree... 107s Reading state information... 107s Solving dependencies... 107s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 107s autopkgtest [15:02:02]: upgrading testbed (apt dist-upgrade and autopurge) 107s Reading package lists... 108s Building dependency tree... 108s Reading state information... 108s Calculating upgrade...Starting pkgProblemResolver with broken count: 0 108s Starting 2 pkgProblemResolver with broken count: 0 108s Done 108s Entering ResolveByKeep 109s 109s Calculating upgrade... 109s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 109s Reading package lists... 109s Building dependency tree... 109s Reading state information... 109s Starting pkgProblemResolver with broken count: 0 110s Starting 2 pkgProblemResolver with broken count: 0 110s Done 110s Solving dependencies... 110s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 110s autopkgtest [15:02:05]: rebooting testbed after setup commands that affected boot 132s autopkgtest-virt-ssh: WARNING: ssh connection failed. Retrying in 3 seconds... 149s autopkgtest [15:02:44]: testbed running kernel: Linux 6.12.0-15-generic #15-Ubuntu SMP Tue Feb 4 16:32:08 UTC 2025 152s autopkgtest [15:02:47]: @@@@@@@@@@@@@@@@@@@@ apt-source libslow5lib 155s Get:1 http://ftpmaster.internal/ubuntu plucky/universe libslow5lib 0.7.0+dfsg-3build2 (dsc) [2457 B] 155s Get:2 http://ftpmaster.internal/ubuntu plucky/universe libslow5lib 0.7.0+dfsg-3build2 (tar) [2014 kB] 155s Get:3 http://ftpmaster.internal/ubuntu plucky/universe libslow5lib 0.7.0+dfsg-3build2 (diff) [8464 B] 155s gpgv: Signature made Tue Jan 28 11:27:41 2025 UTC 155s gpgv: using RSA key 25E3FF2D7F469DBE7D0D4E50AFCFEC8E669CE1C2 155s gpgv: Can't check signature: No public key 155s dpkg-source: warning: cannot verify inline signature for ./libslow5lib_0.7.0+dfsg-3build2.dsc: no acceptable signature found 156s autopkgtest [15:02:51]: testing package libslow5lib version 0.7.0+dfsg-3build2 156s autopkgtest [15:02:51]: build not needed 158s autopkgtest [15:02:53]: test run-pybinding-test: preparing testbed 158s Reading package lists... 159s Building dependency tree... 159s Reading state information... 159s Starting pkgProblemResolver with broken count: 0 159s Starting 2 pkgProblemResolver with broken count: 0 159s Done 159s The following NEW packages will be installed: 159s libblas3 libgfortran5 liblapack3 libslow5-0t64 libslow5-dev libstreamvbyte0 159s python3-all python3-numpy python3-slow5 python3.12 python3.12-minimal 159s 0 upgraded, 11 newly installed, 0 to remove and 0 not upgraded. 159s Need to get 12.7 MB of archives. 159s After this operation, 67.1 MB of additional disk space will be used. 159s Get:1 http://ftpmaster.internal/ubuntu plucky/main ppc64el python3.12-minimal ppc64el 3.12.9-1 [2465 kB] 160s Get:2 http://ftpmaster.internal/ubuntu plucky/main ppc64el python3.12 ppc64el 3.12.9-1 [671 kB] 160s Get:3 http://ftpmaster.internal/ubuntu plucky/main ppc64el libblas3 ppc64el 3.12.1-2 [239 kB] 160s Get:4 http://ftpmaster.internal/ubuntu plucky/main ppc64el libgfortran5 ppc64el 15-20250213-1ubuntu1 [613 kB] 160s Get:5 http://ftpmaster.internal/ubuntu plucky/main ppc64el liblapack3 ppc64el 3.12.1-2 [2813 kB] 160s Get:6 http://ftpmaster.internal/ubuntu plucky/universe ppc64el libslow5-0t64 ppc64el 0.7.0+dfsg-3build2 [71.3 kB] 160s Get:7 http://ftpmaster.internal/ubuntu plucky/universe ppc64el libslow5-dev ppc64el 0.7.0+dfsg-3build2 [103 kB] 160s Get:8 http://ftpmaster.internal/ubuntu plucky/universe ppc64el libstreamvbyte0 ppc64el 0.4.1-4ubuntu1 [6400 B] 160s Get:9 http://ftpmaster.internal/ubuntu plucky/main ppc64el python3-all ppc64el 3.13.1-1~exp2 [896 B] 160s Get:10 http://ftpmaster.internal/ubuntu plucky/main ppc64el python3-numpy ppc64el 1:1.26.4+ds-13 [5146 kB] 160s Get:11 http://ftpmaster.internal/ubuntu plucky/universe ppc64el python3-slow5 ppc64el 0.7.0+dfsg-3build2 [576 kB] 160s Fetched 12.7 MB in 1s (12.7 MB/s) 160s Selecting previously unselected package python3.12-minimal. 161s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 106371 files and directories currently installed.) 161s Preparing to unpack .../00-python3.12-minimal_3.12.9-1_ppc64el.deb ... 161s Unpacking python3.12-minimal (3.12.9-1) ... 161s Selecting previously unselected package python3.12. 161s Preparing to unpack .../01-python3.12_3.12.9-1_ppc64el.deb ... 161s Unpacking python3.12 (3.12.9-1) ... 161s Selecting previously unselected package libblas3:ppc64el. 161s Preparing to unpack .../02-libblas3_3.12.1-2_ppc64el.deb ... 161s Unpacking libblas3:ppc64el (3.12.1-2) ... 161s Selecting previously unselected package libgfortran5:ppc64el. 161s Preparing to unpack .../03-libgfortran5_15-20250213-1ubuntu1_ppc64el.deb ... 161s Unpacking libgfortran5:ppc64el (15-20250213-1ubuntu1) ... 161s Selecting previously unselected package liblapack3:ppc64el. 161s Preparing to unpack .../04-liblapack3_3.12.1-2_ppc64el.deb ... 161s Unpacking liblapack3:ppc64el (3.12.1-2) ... 161s Selecting previously unselected package libslow5-0t64:ppc64el. 161s Preparing to unpack .../05-libslow5-0t64_0.7.0+dfsg-3build2_ppc64el.deb ... 161s Unpacking libslow5-0t64:ppc64el (0.7.0+dfsg-3build2) ... 161s Selecting previously unselected package libslow5-dev:ppc64el. 161s Preparing to unpack .../06-libslow5-dev_0.7.0+dfsg-3build2_ppc64el.deb ... 161s Unpacking libslow5-dev:ppc64el (0.7.0+dfsg-3build2) ... 161s Selecting previously unselected package libstreamvbyte0:ppc64el. 161s Preparing to unpack .../07-libstreamvbyte0_0.4.1-4ubuntu1_ppc64el.deb ... 161s Unpacking libstreamvbyte0:ppc64el (0.4.1-4ubuntu1) ... 161s Selecting previously unselected package python3-all. 161s Preparing to unpack .../08-python3-all_3.13.1-1~exp2_ppc64el.deb ... 161s Unpacking python3-all (3.13.1-1~exp2) ... 161s Selecting previously unselected package python3-numpy. 161s Preparing to unpack .../09-python3-numpy_1%3a1.26.4+ds-13_ppc64el.deb ... 161s Unpacking python3-numpy (1:1.26.4+ds-13) ... 161s Selecting previously unselected package python3-slow5. 161s Preparing to unpack .../10-python3-slow5_0.7.0+dfsg-3build2_ppc64el.deb ... 161s Unpacking python3-slow5 (0.7.0+dfsg-3build2) ... 161s Setting up python3.12-minimal (3.12.9-1) ... 162s Setting up libstreamvbyte0:ppc64el (0.4.1-4ubuntu1) ... 162s Setting up python3.12 (3.12.9-1) ... 164s Setting up python3-all (3.13.1-1~exp2) ... 164s Setting up libblas3:ppc64el (3.12.1-2) ... 164s update-alternatives: using /usr/lib/powerpc64le-linux-gnu/blas/libblas.so.3 to provide /usr/lib/powerpc64le-linux-gnu/libblas.so.3 (libblas.so.3-powerpc64le-linux-gnu) in auto mode 164s Setting up libslow5-0t64:ppc64el (0.7.0+dfsg-3build2) ... 164s Setting up libgfortran5:ppc64el (15-20250213-1ubuntu1) ... 164s Setting up liblapack3:ppc64el (3.12.1-2) ... 164s update-alternatives: using /usr/lib/powerpc64le-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/powerpc64le-linux-gnu/liblapack.so.3 (liblapack.so.3-powerpc64le-linux-gnu) in auto mode 164s Setting up libslow5-dev:ppc64el (0.7.0+dfsg-3build2) ... 164s Setting up python3-numpy (1:1.26.4+ds-13) ... 168s Setting up python3-slow5 (0.7.0+dfsg-3build2) ... 168s Processing triggers for systemd (257.2-3ubuntu1) ... 168s Processing triggers for man-db (2.13.0-1) ... 168s Processing triggers for libc-bin (2.40-4ubuntu1) ... 170s autopkgtest [15:03:05]: test run-pybinding-test: [----------------------- 170s Testing with python3.12 in /tmp/autopkgtest.64AgJ9/autopkgtest_tmp: 170s 21-Feb-25 15:03:05 - [DEBUG]: FILE: examples/example.slow5, mode: r 170s 21-Feb-25 15:03:05 - [DEBUG]: FILE: b'examples/example.slow5', mode: b'r' 170s 21-Feb-25 15:03:05 - [DEBUG]: Number of read_groups: 1 170s 21-Feb-25 15:03:05 - [DEBUG]: FILE: examples/example.slow5, mode: r 170s 21-Feb-25 15:03:05 - [DEBUG]: Creating/loading index... 170s [slow5_idx_init::INFO] Index file not found. Creating an index at 'examples/example.slow5.idx'. 170s 21-Feb-25 15:03:05 - [DEBUG]: get_aux_names starting 170s 21-Feb-25 15:03:05 - [DEBUG]: get_aux_names aux_len: 0 170s 21-Feb-25 15:03:05 - [WARNING]: get_aux_names ret is NULL 170s 21-Feb-25 15:03:05 - [DEBUG]: get_aux_types starting 170s 21-Feb-25 15:03:05 - [DEBUG]: get_aux_types aux_len: 0 170s 21-Feb-25 15:03:05 - [WARNING]: get_aux_types self.s5_aux_type is NULL 170s 21-Feb-25 15:03:05 - [WARNING]: get_read unknown aux name: read_number 170s 21-Feb-25 15:03:05 - [WARNING]: get_read unknown aux name: blah 170s 21-Feb-25 15:03:05 - [WARNING]: get_read unknown aux name: start_mux 170s 21-Feb-25 15:03:05 - [DEBUG]: slow5_get_next return: 0 170s 21-Feb-25 15:03:05 - [DEBUG]: slow5_get_next return: 0 170s 21-Feb-25 15:03:05 - [DEBUG]: slow5_get_next return: 0 170s 21-Feb-25 15:03:05 - [DEBUG]: slow5_get_next return: 0 170s 21-Feb-25 15:03:05 - [DEBUG]: slow5_get_next return: 0 170s 21-Feb-25 15:03:05 - [DEBUG]: slow5_get_next return: -1 170s 21-Feb-25 15:03:05 - [DEBUG]: slow5_get_next reached end of file (EOF)(-1): -1: ['SLOW5_ERR_EOF', 'End Of File reached'] 170s [slow5_idx_get::ERROR] Read ID 'null_read' was not found. At src/slow5_idx.c:441 170s 21-Feb-25 15:03:05 - [DEBUG]: get_read return not 0: -7 170s 21-Feb-25 15:03:05 - [DEBUG]: slow5_get_hdr_keys head_len: 32 170s 21-Feb-25 15:03:05 - [DEBUG]: slow5_get_hdr_keys head_len: 32 170s 21-Feb-25 15:03:05 - [DEBUG]: examples/example.slow5 closed 170s 21-Feb-25 15:03:05 - [DEBUG]: FILE: examples/example2.slow5, mode: r 170s 21-Feb-25 15:03:05 - [DEBUG]: FILE: b'examples/example2.slow5', mode: b'r' 170s 21-Feb-25 15:03:05 - [DEBUG]: Number of read_groups: 4 170s 21-Feb-25 15:03:05 - [DEBUG]: FILE: examples/example2.slow5, mode: r 170s 21-Feb-25 15:03:05 - [DEBUG]: Creating/loading index... 170s [slow5_idx_init::INFO] Index file not found. Creating an index at 'examples/example2.slow5.idx'. 170s 21-Feb-25 15:03:05 - [DEBUG]: get_aux_names starting 170s 21-Feb-25 15:03:05 - [DEBUG]: get_aux_names aux_len: 5 170s 21-Feb-25 15:03:05 - [DEBUG]: get_aux_types starting 170s 21-Feb-25 15:03:05 - [DEBUG]: get_aux_types aux_len: 5 170s 21-Feb-25 15:03:05 - [WARNING]: get_read unknown aux name: blah 170s 21-Feb-25 15:03:05 - [WARNING]: get_read unknown aux name: blah 170s 21-Feb-25 15:03:05 - [DEBUG]: get_aux_names starting 170s 21-Feb-25 15:03:05 - [DEBUG]: get_aux_names aux_len: 5 170s 21-Feb-25 15:03:05 - [DEBUG]: get_aux_types starting 170s 21-Feb-25 15:03:05 - [DEBUG]: get_aux_types aux_len: 5 170s 21-Feb-25 15:03:05 - [DEBUG]: slow5_get_next return: 0 170s 21-Feb-25 15:03:05 - [DEBUG]: slow5_get_next return: 0 170s 21-Feb-25 15:03:05 - [DEBUG]: slow5_get_next return: 0 170s 21-Feb-25 15:03:05 - [DEBUG]: slow5_get_next return: 0 170s 21-Feb-25 15:03:05 - [DEBUG]: slow5_get_next return: 0 170s 21-Feb-25 15:03:05 - [DEBUG]: slow5_get_next return: 0 170s 21-Feb-25 15:03:05 - [DEBUG]: slow5_get_next return: 0 170s 21-Feb-25 15:03:05 - [DEBUG]: slow5_get_next return: 0 170s 21-Feb-25 15:03:05 - [DEBUG]: slow5_get_next return: -1 170s 21-Feb-25 15:03:05 - [DEBUG]: slow5_get_next reached end of file (EOF)(-1): -1: ['SLOW5_ERR_EOF', 'End Of File reached'] 170s 21-Feb-25 15:03:05 - [DEBUG]: examples/example2.slow5 closed 170s 21-Feb-25 15:03:05 - [DEBUG]: FILE: examples/example_write.slow5, mode: w 170s 21-Feb-25 15:03:05 - [DEBUG]: FILE: b'examples/example_write.slow5', mode: b'w' 170s 21-Feb-25 15:03:05 - [DEBUG]: Not writing blow5, skipping compression steps 170s 21-Feb-25 15:03:05 - [DEBUG]: FILE: examples/example2.slow5, mode: r 170s 21-Feb-25 15:03:05 - [DEBUG]: FILE: b'examples/example2.slow5', mode: b'r' 170s 21-Feb-25 15:03:05 - [DEBUG]: Number of read_groups: 4 170s 21-Feb-25 15:03:05 - [DEBUG]: slow5_get_next return: 0 170s 21-Feb-25 15:03:05 - [DEBUG]: write_record: _record_type_validation running 170s 21-Feb-25 15:03:05 - [DEBUG]: write_record: _record_type_validation done 170s 21-Feb-25 15:03:05 - [DEBUG]: write_record: checking header stuff... 170s 21-Feb-25 15:03:05 - [DEBUG]: write_record: writting header... 170s 21-Feb-25 15:03:05 - [DEBUG]: write_record: header written 170s 21-Feb-25 15:03:05 - [DEBUG]: write_record: slow5_rec_init() 170s 21-Feb-25 15:03:05 - [DEBUG]: write_record: self.write assignments... 170s 21-Feb-25 15:03:05 - [DEBUG]: write_record: self.write.raw_signal malloc... 170s 21-Feb-25 15:03:05 - [DEBUG]: write_record: self.write.raw_signal malloc done 170s 21-Feb-25 15:03:05 - [DEBUG]: write_record: self.write assignments done 170s 21-Feb-25 15:03:05 - [DEBUG]: write_record: self.write processing raw_signal 170s 21-Feb-25 15:03:05 - [DEBUG]: write_record: self.write raw_signal done 170s 21-Feb-25 15:03:05 - [DEBUG]: write_record: slow5_write() 170s 21-Feb-25 15:03:05 - [DEBUG]: write_record: slow5_write() ret: 305872 170s 21-Feb-25 15:03:05 - [DEBUG]: write_record: slow5_rec_free() 170s 21-Feb-25 15:03:05 - [DEBUG]: write_record: function complete, returning 0 171s 21-Feb-25 15:03:05 - [DEBUG]: slow5_get_next return: 0 171s 21-Feb-25 15:03:05 - [DEBUG]: write_record: _record_type_validation running 171s 21-Feb-25 15:03:05 - [DEBUG]: write_record: _record_type_validation done 171s 21-Feb-25 15:03:05 - [DEBUG]: write_record: slow5_rec_init() 171s 21-Feb-25 15:03:05 - [DEBUG]: write_record: self.write assignments... 171s 21-Feb-25 15:03:05 - [DEBUG]: write_record: self.write.raw_signal malloc... 171s 21-Feb-25 15:03:05 - [DEBUG]: write_record: self.write.raw_signal malloc done 171s 21-Feb-25 15:03:05 - [DEBUG]: write_record: self.write assignments done 171s 21-Feb-25 15:03:05 - [DEBUG]: write_record: self.write processing raw_signal 171s 21-Feb-25 15:03:05 - [DEBUG]: write_record: self.write raw_signal done 171s 21-Feb-25 15:03:05 - [DEBUG]: write_record: slow5_write() 171s 21-Feb-25 15:03:05 - [DEBUG]: write_record: slow5_write() ret: 152707 171s 21-Feb-25 15:03:05 - [DEBUG]: write_record: slow5_rec_free() 171s 21-Feb-25 15:03:05 - [DEBUG]: write_record: function complete, returning 0 171s 21-Feb-25 15:03:05 - [DEBUG]: slow5_get_next return: 0 171s 21-Feb-25 15:03:05 - [DEBUG]: write_record: _record_type_validation running 171s 21-Feb-25 15:03:05 - [DEBUG]: write_record: _record_type_validation done 171s 21-Feb-25 15:03:05 - [DEBUG]: write_record: slow5_rec_init() 171s 21-Feb-25 15:03:05 - [DEBUG]: write_record: self.write assignments... 171s 21-Feb-25 15:03:05 - [DEBUG]: write_record: self.write.raw_signal malloc... 171s 21-Feb-25 15:03:05 - [DEBUG]: write_record: self.write.raw_signal malloc done 171s 21-Feb-25 15:03:05 - [DEBUG]: write_record: self.write assignments done 171s 21-Feb-25 15:03:05 - [DEBUG]: write_record: self.write processing raw_signal 171s 21-Feb-25 15:03:05 - [DEBUG]: write_record: self.write raw_signal done 171s 21-Feb-25 15:03:05 - [DEBUG]: write_record: slow5_write() 171s 21-Feb-25 15:03:05 - [DEBUG]: write_record: slow5_write() ret: 305872 171s 21-Feb-25 15:03:05 - [DEBUG]: write_record: slow5_rec_free() 171s 21-Feb-25 15:03:05 - [DEBUG]: write_record: function complete, returning 0 171s 21-Feb-25 15:03:05 - [DEBUG]: slow5_get_next return: 0 171s 21-Feb-25 15:03:05 - [DEBUG]: write_record: _record_type_validation running 171s 21-Feb-25 15:03:05 - [DEBUG]: write_record: _record_type_validation done 171s 21-Feb-25 15:03:05 - [DEBUG]: write_record: slow5_rec_init() 171s 21-Feb-25 15:03:05 - [DEBUG]: write_record: self.write assignments... 171s 21-Feb-25 15:03:05 - [DEBUG]: write_record: self.write.raw_signal malloc... 171s 21-Feb-25 15:03:05 - [DEBUG]: write_record: self.write.raw_signal malloc done 171s 21-Feb-25 15:03:05 - [DEBUG]: write_record: self.write assignments done 171s 21-Feb-25 15:03:05 - [DEBUG]: write_record: self.write processing raw_signal 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: self.write raw_signal done 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: slow5_write() 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: slow5_write() ret: 152707 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: slow5_rec_free() 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: function complete, returning 0 171s 21-Feb-25 15:03:06 - [DEBUG]: slow5_get_next return: 0 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: _record_type_validation running 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: _record_type_validation done 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: slow5_rec_init() 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: self.write assignments... 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: self.write.raw_signal malloc... 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: self.write.raw_signal malloc done 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: self.write assignments done 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: self.write processing raw_signal 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: self.write raw_signal done 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: slow5_write() 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: slow5_write() ret: 305872 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: slow5_rec_free() 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: function complete, returning 0 171s 21-Feb-25 15:03:06 - [DEBUG]: slow5_get_next return: 0 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: _record_type_validation running 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: _record_type_validation done 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: slow5_rec_init() 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: self.write assignments... 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: self.write.raw_signal malloc... 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: self.write.raw_signal malloc done 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: self.write assignments done 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: self.write processing raw_signal 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: self.write raw_signal done 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: slow5_write() 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: slow5_write() ret: 152707 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: slow5_rec_free() 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: function complete, returning 0 171s 21-Feb-25 15:03:06 - [DEBUG]: slow5_get_next return: 0 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: _record_type_validation running 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: _record_type_validation done 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: slow5_rec_init() 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: self.write assignments... 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: self.write.raw_signal malloc... 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: self.write.raw_signal malloc done 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: self.write assignments done 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: self.write processing raw_signal 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: self.write raw_signal done 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: slow5_write() 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: slow5_write() ret: 305906 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: slow5_rec_free() 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: function complete, returning 0 171s 21-Feb-25 15:03:06 - [DEBUG]: slow5_get_next return: 0 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: _record_type_validation running 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: _record_type_validation done 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: slow5_rec_init() 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: self.write assignments... 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: self.write.raw_signal malloc... 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: self.write.raw_signal malloc done 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: self.write assignments done 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: self.write processing raw_signal 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: self.write raw_signal done 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: slow5_write() 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: slow5_write() ret: 152741 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: slow5_rec_free() 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: function complete, returning 0 171s 21-Feb-25 15:03:06 - [DEBUG]: slow5_get_next return: -1 171s 21-Feb-25 15:03:06 - [DEBUG]: slow5_get_next reached end of file (EOF)(-1): -1: ['SLOW5_ERR_EOF', 'End Of File reached'] 171s 21-Feb-25 15:03:06 - [DEBUG]: examples/example_write.slow5 closed 171s 21-Feb-25 15:03:06 - [DEBUG]: examples/example2.slow5 closed 171s 21-Feb-25 15:03:06 - [DEBUG]: FILE: examples/example_write_append.blow5, mode: w 171s 21-Feb-25 15:03:06 - [DEBUG]: FILE: b'examples/example_write_append.blow5', mode: b'w' 171s 21-Feb-25 15:03:06 - [DEBUG]: examples/example_write.slow5 already closed 171s 21-Feb-25 15:03:06 - [DEBUG]: pathname: examples/example_write.slow5 171s 21-Feb-25 15:03:06 - [DEBUG]: total_time_slow5_get_next: 0.0 seconds 171s 21-Feb-25 15:03:06 - [DEBUG]: total_time_yield_reads: 0.0 seconds 171s 21-Feb-25 15:03:06 - [DEBUG]: total_single_write_time: 0.041495561599731445 seconds 171s 21-Feb-25 15:03:06 - [DEBUG]: total_multi_write_signal_time: 0.0 seconds 171s 21-Feb-25 15:03:06 - [DEBUG]: total_multi_write_time: 0.0 seconds 171s 21-Feb-25 15:03:06 - [DEBUG]: FILE: examples/example2.slow5, mode: r 171s 21-Feb-25 15:03:06 - [DEBUG]: FILE: b'examples/example2.slow5', mode: b'r' 171s 21-Feb-25 15:03:06 - [DEBUG]: Number of read_groups: 4 171s 21-Feb-25 15:03:06 - [DEBUG]: pathname: examples/example2.slow5 171s 21-Feb-25 15:03:06 - [DEBUG]: total_time_slow5_get_next: 0.02347397804260254 seconds 171s 21-Feb-25 15:03:06 - [DEBUG]: total_time_yield_reads: 0.024333715438842773 seconds 171s 21-Feb-25 15:03:06 - [DEBUG]: total_single_write_time: 0.0 seconds 171s 21-Feb-25 15:03:06 - [DEBUG]: total_multi_write_signal_time: 0.0 seconds 171s 21-Feb-25 15:03:06 - [DEBUG]: total_multi_write_time: 0.0 seconds 171s 21-Feb-25 15:03:06 - [DEBUG]: slow5_get_next return: 0 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: _record_type_validation running 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: _record_type_validation done 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: checking header stuff... 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: writting header... 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: header written 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: slow5_rec_init() 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: self.write assignments... 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: self.write.raw_signal malloc... 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: self.write.raw_signal malloc done 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: self.write assignments done 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: self.write processing raw_signal 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: self.write raw_signal done 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: slow5_write() 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: slow5_write() ret: 152976 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: slow5_rec_free() 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: function complete, returning 0 171s 21-Feb-25 15:03:06 - [DEBUG]: slow5_get_next return: 0 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: _record_type_validation running 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: _record_type_validation done 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: slow5_rec_init() 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: self.write assignments... 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: self.write.raw_signal malloc... 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: self.write.raw_signal malloc done 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: self.write assignments done 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: self.write processing raw_signal 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: self.write raw_signal done 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: slow5_write() 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: slow5_write() ret: 76384 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: slow5_rec_free() 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: function complete, returning 0 171s 21-Feb-25 15:03:06 - [DEBUG]: slow5_get_next return: 0 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: _record_type_validation running 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: _record_type_validation done 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: slow5_rec_init() 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: self.write assignments... 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: self.write.raw_signal malloc... 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: self.write.raw_signal malloc done 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: self.write assignments done 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: self.write processing raw_signal 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: self.write raw_signal done 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: slow5_write() 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: slow5_write() ret: 152976 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: slow5_rec_free() 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: function complete, returning 0 171s 21-Feb-25 15:03:06 - [DEBUG]: slow5_get_next return: 0 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: _record_type_validation running 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: _record_type_validation done 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: slow5_rec_init() 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: self.write assignments... 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: self.write.raw_signal malloc... 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: self.write.raw_signal malloc done 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: self.write assignments done 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: self.write processing raw_signal 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: self.write raw_signal done 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: slow5_write() 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: slow5_write() ret: 76384 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: slow5_rec_free() 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: function complete, returning 0 171s 21-Feb-25 15:03:06 - [DEBUG]: slow5_get_next return: 0 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: _record_type_validation running 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: _record_type_validation done 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: slow5_rec_init() 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: self.write assignments... 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: self.write.raw_signal malloc... 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: self.write.raw_signal malloc done 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: self.write assignments done 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: self.write processing raw_signal 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: self.write raw_signal done 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: slow5_write() 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: slow5_write() ret: 152976 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: slow5_rec_free() 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: function complete, returning 0 171s 21-Feb-25 15:03:06 - [DEBUG]: slow5_get_next return: 0 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: _record_type_validation running 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: _record_type_validation done 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: slow5_rec_init() 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: self.write assignments... 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: self.write.raw_signal malloc... 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: self.write.raw_signal malloc done 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: self.write assignments done 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: self.write processing raw_signal 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: self.write raw_signal done 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: slow5_write() 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: slow5_write() ret: 76384 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: slow5_rec_free() 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: function complete, returning 0 171s 21-Feb-25 15:03:06 - [DEBUG]: slow5_get_next return: 0 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: _record_type_validation running 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: _record_type_validation done 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: slow5_rec_init() 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: self.write assignments... 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: self.write.raw_signal malloc... 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: self.write.raw_signal malloc done 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: self.write assignments done 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: self.write processing raw_signal 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: self.write raw_signal done 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: slow5_write() 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: slow5_write() ret: 153010 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: slow5_rec_free() 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: function complete, returning 0 171s 21-Feb-25 15:03:06 - [DEBUG]: slow5_get_next return: 0 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: _record_type_validation running 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: _record_type_validation done 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: slow5_rec_init() 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: self.write assignments... 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: self.write.raw_signal malloc... 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: self.write.raw_signal malloc done 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: self.write assignments done 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: self.write processing raw_signal 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: self.write raw_signal done 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: slow5_write() 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: slow5_write() ret: 76418 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: slow5_rec_free() 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: function complete, returning 0 171s 21-Feb-25 15:03:06 - [DEBUG]: slow5_get_next return: -1 171s 21-Feb-25 15:03:06 - [DEBUG]: slow5_get_next reached end of file (EOF)(-1): -1: ['SLOW5_ERR_EOF', 'End Of File reached'] 171s 21-Feb-25 15:03:06 - [DEBUG]: examples/example2.slow5 closed 171s 21-Feb-25 15:03:06 - [DEBUG]: examples/example_write_append.blow5 closed 171s 21-Feb-25 15:03:06 - [DEBUG]: FILE: examples/example_write_append.blow5, mode: a 171s 21-Feb-25 15:03:06 - [DEBUG]: FILE: b'examples/example_write_append.blow5', mode: b'a' 171s 21-Feb-25 15:03:06 - [DEBUG]: slow5_get_hdr_keys head_len: 38 171s 21-Feb-25 15:03:06 - [DEBUG]: FILE: examples/example2.slow5, mode: r 171s 21-Feb-25 15:03:06 - [DEBUG]: FILE: b'examples/example2.slow5', mode: b'r' 171s 21-Feb-25 15:03:06 - [DEBUG]: Number of read_groups: 4 171s 21-Feb-25 15:03:06 - [DEBUG]: pathname: examples/example2.slow5 171s |==============================================| 171s | pyslow5 test launch | 171s |==============================================| 171s ['__class__', '__delattr__', '__dir__', '__doc__', '__eq__', '__format__', '__ge__', '__getattribute__', '__getstate__', '__gt__', '__hash__', '__init__', '__init_subclass__', '__le__', '__lt__', '__ne__', '__new__', '__reduce__', '__reduce_ex__', '__repr__', '__setattr__', '__setstate__', '__sizeof__', '__str__', '__subclasshook__', '_aux_header_type_validation', '_convert_to_pA', '_get_batches', '_get_read', '_get_read_aux', '_get_read_multi', '_get_seq_read_aux', '_header_type_validation', '_multi_record_type_validation', '_record_type_validation', 'close', 'get_all_headers', 'get_aux_names', 'get_aux_types', 'get_empty_header', 'get_empty_record', 'get_header_names', 'get_header_value', 'get_read', 'get_read_ids', 'get_read_list', 'get_read_list_multi', 'seq_reads', 'seq_reads_multi', 'write_header', 'write_record', 'write_record_batch'] 171s slow5 file opened and object created in: 0.0004 seconds 171s ============================================== 171s get_read check, r1 171s get_read in: 0.0044 seconds 171s read_id: r1 171s read_group: 0 171s digitisation: 8192.0 171s offset: 23.0 171s range: 1467.61 171s sampling_rate: 4000.0 171s len_raw_signal: 59676 171s signal: [1039 588 588 593 586 574 570 585 588 586] 171s pylen of signal: 59676 171s AUX FIELDS: 171s read_number: None 171s start_mux: None 171s blah: None 171s ============================================== 171s get_read check, r4, converte to pA 171s get_read in: 0.0036 seconds 171s read_id: r4 171s read_group: 0 171s digitisation: 8192.0 171s offset: 23.0 171s range: 1467.61 171s sampling_rate: 4000.0 171s len_raw_signal: 59670 171s signal: [190.25902 108.92418 109.46163 109.10333 107.67012 108.38673 171s 108.745026 109.10333 111.074 108.38673 ] 171s pylen of signal: 59670 171s signal value type: 171s ============================================== 171s seq_reads check, all reads 171s seq_reads readIDs: 171s type check reads: 171s r1 171s r2 171s r3 171s r4 171s r5 171s seq_reads in: 0.0175 seconds 171s ============================================== 171s Yield check, selected reads 171s get_read_list in: 0.0 seconds 171s yielded readIDs: 171s r1 r1 171s r3 r3 171s null_read read not found, None returned 171s r5 r5 171s r2 r2 171s r1 r1 171s ============================================== 171s Get headder names 171s header names: 171s ['asic_id', 'asic_id_eeprom', 'asic_temp', 'auto_update', 'auto_update_source', 'bream_core_version', 'bream_is_standard', 'bream_map_version', 'bream_ont_version', 'bream_prod_version', 'bream_rnd_version', 'device_id', 'exp_script_name', 'exp_script_purpose', 'exp_start_time', 'experiment_kit', 'experiment_type', 'file_version', 'filename', 'flow_cell_id', 'heatsink_temp', 'hostname', 'installation_type', 'local_firmware_file', 'operating_system', 'protocol_run_id', 'protocols_version', 'run_id', 'sample_frequency', 'usb_config', 'user_filename_input', 'version'] 171s ============================================== 171s get_all_headers 171s {'asic_id': '3574887596', 'asic_id_eeprom': '0', 'asic_temp': '29.2145729', 'auto_update': '1', 'auto_update_source': 'https://mirror.oxfordnanoportal.com/software/MinKNOW/', 'bream_core_version': '1.1.20.1', 'bream_is_standard': '1', 'bream_map_version': '1.1.20.1', 'bream_ont_version': '1.1.20.1', 'bream_prod_version': '1.1.20.1', 'bream_rnd_version': '0.1.1', 'device_id': 'MN16450', 'exp_script_name': 'python/recipes/nc/NC_48Hr_Sequencing_Run_FLO-MIN106_SQK-LSK108.py', 'exp_script_purpose': 'sequencing_run', 'exp_start_time': '1479433093', 'experiment_kit': 'genomic_dna', 'experiment_type': 'customer_qc', 'file_version': '1', 'filename': 'deamernanopore_20161117_fnfab43577_mn16450_sequencing_run_ma_821_r9_4_na12878_11_17_16_88738', 'flow_cell_id': 'FAB43577', 'heatsink_temp': '33.9921875', 'hostname': 'DEAMERNANOPORE', 'installation_type': 'map', 'local_firmware_file': '0', 'operating_system': 'Windows 6.2', 'protocol_run_id': 'a4429838-103c-497f-a824-7dffa72cfd81', 'protocols_version': '1.1.20', 'run_id': 'd6e473a6d513ec6bfc150c60fd4556d72f0e6d18', 'sample_frequency': '4000', 'usb_config': '1.0.11_ONT#MinION_fpga_1.0.1#ctrl#Auto', 'user_filename_input': 'ma_821_r9.4_na12878_11_17_16', 'version': '1.1.20'} 171s ============================================== 171s Get headder attributes 171s flow_cell_id: FAB43577 171s exp_start_time: 1479433093 171s heatsink_temp: 33.9921875 171s asic_id: 3574887596 171s asic_id_eeprom: 0 171s asic_temp: 29.2145729 171s auto_update: 1 171s auto_update_source: https://mirror.oxfordnanoportal.com/software/MinKNOW/ 171s bream_core_version: 1.1.20.1 171s bream_is_standard: 1 171s bream_map_version: 1.1.20.1 171s bream_ont_version: 1.1.20.1 171s bream_prod_version: 1.1.20.1 171s bream_rnd_version: 0.1.1 171s device_id: MN16450 171s exp_script_name: python/recipes/nc/NC_48Hr_Sequencing_Run_FLO-MIN106_SQK-LSK108.py 171s exp_script_purpose: sequencing_run 171s exp_start_time: 1479433093 171s experiment_kit: genomic_dna 171s experiment_type: customer_qc 171s file_version: 1 171s filename: deamernanopore_20161117_fnfab43577_mn16450_sequencing_run_ma_821_r9_4_na12878_11_17_16_88738 171s flow_cell_id: FAB43577 171s heatsink_temp: 33.9921875 171s hostname: DEAMERNANOPORE 171s installation_type: map 171s local_firmware_file: 0 171s operating_system: Windows 6.2 171s protocol_run_id: a4429838-103c-497f-a824-7dffa72cfd81 171s protocols_version: 1.1.20 171s run_id: d6e473a6d513ec6bfc150c60fd4556d72f0e6d18 171s sample_frequency: 4000 171s usb_config: 1.0.11_ONT#MinION_fpga_1.0.1#ctrl#Auto 171s user_filename_input: ma_821_r9.4_na12878_11_17_16 171s version: 1.1.20 171s ============================================== 171s get_read check, 0d624d4b-671f-40b8-9798-84f2ccc4d7fc 171s read_id: 0d624d4b-671f-40b8-9798-84f2ccc4d7fc 171s read_group: 3 171s digitisation: 8192.0 171s offset: 6.0 171s range: 1444.86 171s sampling_rate: 4000.0 171s len_raw_signal: 38164 171s signal: [1462 1075 795 801 797 788 817 791 801 802] 171s pylen of signal: 38164 171s AUX FIELDS: 171s read_number: 2287 171s start_mux: 2 171s blah: None 171s AUX FIELDS: 171s blah: None 171s AUX FIELDS: 171s read_number: 2287 171s ============================================== 171s Get aux names 171s aux names: 171s ['channel_number', 'median_before', 'read_number', 'start_mux', 'start_time'] 171s ============================================== 171s Get aux types 171s aux types: 171s [22, 9, 2, 4, 7] 171s ============================================== 171s AUX FIELDS: 171s channel_number: 391 171s median_before: 260.557264 171s read_number: 2287 171s start_mux: 2 171s start_time: 36886851 171s ============================================== 171s seq_reads with aux: 171s type check reads: 171s r0 171s read_number 4019 171s r1 171s read_number 2287 171s r2 171s read_number 4019 171s r3 171s read_number 2287 171s r4 171s read_number 4019 171s r5 171s read_number 2287 171s 0a238451-b9ed-446d-a152-badd074006c4 171s read_number 4019 171s 0d624d4b-671f-40b8-9798-84f2ccc4d7fc 171s read_number 2287 171s ============================================== 171s write reads no aux 171s ret: write_header(): 0 171s ret: write_record(): 0 171s ret: write_record(): 0 171s ret: write_record(): 0 171s ret: write_record(): 0 171s ret: write_record(): 0 171s ret: write_record(): 0 171s ret: write_record(): 0 171s ret: write_record(): 0 171s ============================================== 171s append reads no aux 171s ret: write_header(): 0 171s ret: write_record(): 0 171s ret: write_record(): 0 171s ret: write_record(): 0 171s ret: write_record(): 0 171s ret: write_record(): 0 171s ret: write_record(): 0 171s ret: write_record(): 0 171s ret: write_record(): 0 171s get_all_headers 171s {'asic_id': 'test_0', 'asic_id_eeprom': 'test_1', 'asic_temp': 'test_2', 'asic_version': 'test_3', 'auto_update': 'test_4', 'auto_update_source': 'test_5', 'barcoding_enabled': 'test_6', 'bream_is_standard': 'test_7', 'configuration_version': 'test_8', 'device_id': 'test_9', 'device_type': 'test_10', 'distribution_status': 'test_11', 'distribution_version': 'test_12', 'exp_script_name': 'test_13', 'exp_script_purpose': 'test_14', 'exp_start_time': 'test_15', 'experiment_duration_set': 'test_16', 'flow_cell_id': 'test_17', 'flow_cell_product_code': 'test_18', 'guppy_version': 'test_19', 'heatsink_temp': 'test_20', 'hostname': 'test_21', 'hublett_board_id': 'test_36', 'installation_type': 'test_22', 'local_basecalling': 'test_23', 'operating_system': 'test_24', 'package': 'test_25', 'protocol_group_id': 'test_26', 'protocol_run_id': 'test_27', 'protocol_start_time': 'test_28', 'protocols_version': 'test_29', 'run_id': 'test_30', 'sample_frequency': 'test_31', 'sample_id': 'test_32', 'satellite_firmware_version': 'test_37', 'sequencing_kit': 'test_33', 'usb_config': 'test_34', 'version': 'test_35'}21-Feb-25 15:03:06 - [DEBUG]: total_time_slow5_get_next: 0.022129535675048828 seconds 171s 21-Feb-25 15:03:06 - [DEBUG]: total_time_yield_reads: 0.02299666404724121 seconds 171s 21-Feb-25 15:03:06 - [DEBUG]: total_single_write_time: 0.0 seconds 171s 21-Feb-25 15:03:06 - [DEBUG]: total_multi_write_signal_time: 0.0 seconds 171s 21-Feb-25 15:03:06 - [DEBUG]: total_multi_write_time: 0.0 seconds 171s 21-Feb-25 15:03:06 - [DEBUG]: slow5_get_next return: 0 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: _record_type_validation running 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: _record_type_validation done 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: slow5_rec_init() 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: self.write assignments... 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: self.write.raw_signal malloc... 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: self.write.raw_signal malloc done 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: self.write assignments done 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: self.write processing raw_signal 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: self.write raw_signal done 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: slow5_write() 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: slow5_write() ret: 152983 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: slow5_rec_free() 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: function complete, returning 0 171s 21-Feb-25 15:03:06 - [DEBUG]: slow5_get_next return: 0 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: _record_type_validation running 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: _record_type_validation done 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: slow5_rec_init() 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: self.write assignments... 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: self.write.raw_signal malloc... 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: self.write.raw_signal malloc done 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: self.write assignments done 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: self.write processing raw_signal 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: self.write raw_signal done 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: slow5_write() 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: slow5_write() ret: 76391 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: slow5_rec_free() 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: function complete, returning 0 171s 21-Feb-25 15:03:06 - [DEBUG]: slow5_get_next return: 0 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: _record_type_validation running 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: _record_type_validation done 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: slow5_rec_init() 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: self.write assignments... 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: self.write.raw_signal malloc... 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: self.write.raw_signal malloc done 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: self.write assignments done 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: self.write processing raw_signal 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: self.write raw_signal done 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: slow5_write() 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: slow5_write() ret: 152983 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: slow5_rec_free() 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: function complete, returning 0 171s 21-Feb-25 15:03:06 - [DEBUG]: slow5_get_next return: 0 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: _record_type_validation running 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: _record_type_validation done 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: slow5_rec_init() 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: self.write assignments... 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: self.write.raw_signal malloc... 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: self.write.raw_signal malloc done 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: self.write assignments done 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: self.write processing raw_signal 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: self.write raw_signal done 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: slow5_write() 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: slow5_write() ret: 76391 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: slow5_rec_free() 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: function complete, returning 0 171s 21-Feb-25 15:03:06 - [DEBUG]: slow5_get_next return: 0 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: _record_type_validation running 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: _record_type_validation done 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: slow5_rec_init() 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: self.write assignments... 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: self.write.raw_signal malloc... 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: self.write.raw_signal malloc done 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: self.write assignments done 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: self.write processing raw_signal 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: self.write raw_signal done 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: slow5_write() 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: slow5_write() ret: 152983 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: slow5_rec_free() 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: function complete, returning 0 171s 21-Feb-25 15:03:06 - [DEBUG]: slow5_get_next return: 0 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: _record_type_validation running 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: _record_type_validation done 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: slow5_rec_init() 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: self.write assignments... 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: self.write.raw_signal malloc... 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: self.write.raw_signal malloc done 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: self.write assignments done 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: self.write processing raw_signal 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: self.write raw_signal done 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: slow5_write() 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: slow5_write() ret: 76391 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: slow5_rec_free() 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: function complete, returning 0 171s 21-Feb-25 15:03:06 - [DEBUG]: slow5_get_next return: 0 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: _record_type_validation running 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: _record_type_validation done 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: slow5_rec_init() 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: self.write assignments... 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: self.write.raw_signal malloc... 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: self.write.raw_signal malloc done 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: self.write assignments done 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: self.write processing raw_signal 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: self.write raw_signal done 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: slow5_write() 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: slow5_write() ret: 153017 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: slow5_rec_free() 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: function complete, returning 0 171s 21-Feb-25 15:03:06 - [DEBUG]: slow5_get_next return: 0 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: _record_type_validation running 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: _record_type_validation done 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: slow5_rec_init() 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: self.write assignments... 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: self.write.raw_signal malloc... 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: self.write.raw_signal malloc done 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: self.write assignments done 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: self.write processing raw_signal 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: self.write raw_signal done 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: slow5_write() 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: slow5_write() ret: 76425 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: slow5_rec_free() 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: function complete, returning 0 171s 21-Feb-25 15:03:06 - [DEBUG]: slow5_get_next return: -1 171s 21-Feb-25 15:03:06 - [DEBUG]: slow5_get_next reached end of file (EOF)(-1): -1: ['SLOW5_ERR_EOF', 'End Of File reached'] 171s 21-Feb-25 15:03:06 - [DEBUG]: examples/example2.slow5 closed 171s 21-Feb-25 15:03:06 - [DEBUG]: examples/example_write_append.blow5 closed 171s 21-Feb-25 15:03:06 - [DEBUG]: FILE: examples/example_write_aux.blow5, mode: w 171s 21-Feb-25 15:03:06 - [DEBUG]: FILE: b'examples/example_write_aux.blow5', mode: b'w' 171s 21-Feb-25 15:03:06 - [DEBUG]: examples/example_write_append.blow5 already closed 171s 21-Feb-25 15:03:06 - [DEBUG]: pathname: examples/example_write_append.blow5 171s 21-Feb-25 15:03:06 - [DEBUG]: total_time_slow5_get_next: 0.0 seconds 171s 21-Feb-25 15:03:06 - [DEBUG]: total_time_yield_reads: 0.0 seconds 171s 21-Feb-25 15:03:06 - [DEBUG]: total_single_write_time: 0.035097599029541016 seconds 171s 21-Feb-25 15:03:06 - [DEBUG]: total_multi_write_signal_time: 0.0 seconds 171s 21-Feb-25 15:03:06 - [DEBUG]: total_multi_write_time: 0.0 seconds 171s 21-Feb-25 15:03:06 - [DEBUG]: FILE: examples/example2.slow5, mode: r 171s 21-Feb-25 15:03:06 - [DEBUG]: FILE: b'examples/example2.slow5', mode: b'r' 171s 21-Feb-25 15:03:06 - [DEBUG]: Number of read_groups: 4 171s 21-Feb-25 15:03:06 - [DEBUG]: pathname: examples/example2.slow5 171s 21-Feb-25 15:03:06 - [DEBUG]: total_time_slow5_get_next: 0.021811723709106445 seconds 171s 21-Feb-25 15:03:06 - [DEBUG]: total_time_yield_reads: 0.022605419158935547 seconds 171s 21-Feb-25 15:03:06 - [DEBUG]: total_single_write_time: 0.0 seconds 171s 21-Feb-25 15:03:06 - [DEBUG]: total_multi_write_signal_time: 0.0 seconds 171s 21-Feb-25 15:03:06 - [DEBUG]: total_multi_write_time: 0.0 seconds 171s 21-Feb-25 15:03:06 - [DEBUG]: slow5_get_next return: 0 171s 21-Feb-25 15:03:06 - [DEBUG]: get_aux_names starting 171s 21-Feb-25 15:03:06 - [DEBUG]: get_aux_names aux_len: 5 171s 21-Feb-25 15:03:06 - [DEBUG]: get_aux_types starting 171s 21-Feb-25 15:03:06 - [DEBUG]: get_aux_types aux_len: 5 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: _record_type_validation running 171s 21-Feb-25 15:03:06 - [DEBUG]: _record_type_validation: doing aux stuff... 171s 21-Feb-25 15:03:06 - [DEBUG]: _record_type_validation: aux passed tests... 171s 21-Feb-25 15:03:06 - [DEBUG]: _record_type_validation: aux passed tests... 171s 21-Feb-25 15:03:06 - [DEBUG]: _record_type_validation: aux passed tests... 171s 21-Feb-25 15:03:06 - [DEBUG]: _record_type_validation: aux passed tests... 171s 21-Feb-25 15:03:06 - [DEBUG]: _record_type_validation: aux passed tests... 171s 21-Feb-25 15:03:06 - [DEBUG]: _record_type_validation: doing aux stuff... 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: _record_type_validation done 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: checking header stuff... 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: writting header... 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: header written 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: slow5_rec_init() 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: self.write assignments... 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: self.write.raw_signal malloc... 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: self.write.raw_signal malloc done 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: self.write assignments done 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: self.write processing raw_signal 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: self.write raw_signal done 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: aux stuff... 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: checked_aux: channel_number: 281 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: slow5_aux_set_string running... 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: slow5_aux_set_string type: 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: slow5_aux_set_string running done: ret = 0 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: checked_aux: median_before: 231.363533 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: checked_aux: read_number: 4019 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: checked_aux: start_mux: 1 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: checked_aux: start_time: 78470500 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: aux stuff done 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: slow5_write() 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: slow5_write() ret: 67258 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: slow5_rec_free() 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: function complete, returning 0 171s 21-Feb-25 15:03:06 - [DEBUG]: slow5_get_next return: 0 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: _record_type_validation running 171s 21-Feb-25 15:03:06 - [DEBUG]: _record_type_validation: doing aux stuff... 171s 21-Feb-25 15:03:06 - [DEBUG]: _record_type_validation: aux passed tests... 171s 21-Feb-25 15:03:06 - [DEBUG]: _record_type_validation: aux passed tests... 171s 21-Feb-25 15:03:06 - [DEBUG]: _record_type_validation: aux passed tests... 171s 21-Feb-25 15:03:06 - [DEBUG]: _record_type_validation: aux passed tests... 171s 21-Feb-25 15:03:06 - [DEBUG]: _record_type_validation: aux passed tests... 171s 21-Feb-25 15:03:06 - [DEBUG]: _record_type_validation: doing aux stuff... 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: _record_type_validation done 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: slow5_rec_init() 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: self.write assignments... 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: self.write.raw_signal malloc... 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: self.write.raw_signal malloc done 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: self.write assignments done 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: self.write processing raw_signal 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: self.write raw_signal done 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: aux stuff... 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: checked_aux: channel_number: 391 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: slow5_aux_set_string running... 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: slow5_aux_set_string type: 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: slow5_aux_set_string running done: ret = 0 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: checked_aux: median_before: 260.557264 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: checked_aux: read_number: 2287 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: checked_aux: start_mux: 2 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: checked_aux: start_time: 36886851 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: aux stuff done 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: slow5_write() 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: slow5_write() ret: 32408 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: slow5_rec_free() 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: function complete, returning 0 171s 21-Feb-25 15:03:06 - [DEBUG]: slow5_get_next return: 0 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: _record_type_validation running 171s 21-Feb-25 15:03:06 - [DEBUG]: _record_type_validation: doing aux stuff... 171s 21-Feb-25 15:03:06 - [DEBUG]: _record_type_validation: aux passed tests... 171s 21-Feb-25 15:03:06 - [DEBUG]: _record_type_validation: aux passed tests... 171s 21-Feb-25 15:03:06 - [DEBUG]: _record_type_validation: aux passed tests... 171s 21-Feb-25 15:03:06 - [DEBUG]: _record_type_validation: aux passed tests... 171s 21-Feb-25 15:03:06 - [DEBUG]: _record_type_validation: aux passed tests... 171s 21-Feb-25 15:03:06 - [DEBUG]: _record_type_validation: doing aux stuff... 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: _record_type_validation done 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: slow5_rec_init() 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: self.write assignments... 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: self.write.raw_signal malloc... 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: self.write.raw_signal malloc done 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: self.write assignments done 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: self.write processing raw_signal 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: self.write raw_signal done 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: aux stuff... 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: checked_aux: channel_number: 281 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: slow5_aux_set_string running... 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: slow5_aux_set_string type: 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: slow5_aux_set_string running done: ret = 0 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: checked_aux: median_before: 231.363533 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: checked_aux: read_number: 4019 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: checked_aux: start_mux: 1 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: checked_aux: start_time: 78470500 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: aux stuff done 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: slow5_write() 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: slow5_write() ret: 67258 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: slow5_rec_free() 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: function complete, returning 0 171s 21-Feb-25 15:03:06 - [DEBUG]: slow5_get_next return: 0 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: _record_type_validation running 171s 21-Feb-25 15:03:06 - [DEBUG]: _record_type_validation: doing aux stuff... 171s 21-Feb-25 15:03:06 - [DEBUG]: _record_type_validation: aux passed tests... 171s 21-Feb-25 15:03:06 - [DEBUG]: _record_type_validation: aux passed tests... 171s 21-Feb-25 15:03:06 - [DEBUG]: _record_type_validation: aux passed tests... 171s 21-Feb-25 15:03:06 - [DEBUG]: _record_type_validation: aux passed tests... 171s 21-Feb-25 15:03:06 - [DEBUG]: _record_type_validation: aux passed tests... 171s 21-Feb-25 15:03:06 - [DEBUG]: _record_type_validation: doing aux stuff... 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: _record_type_validation done 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: slow5_rec_init() 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: self.write assignments... 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: self.write.raw_signal malloc... 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: self.write.raw_signal malloc done 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: self.write assignments done 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: self.write processing raw_signal 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: self.write raw_signal done 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: aux stuff... 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: checked_aux: channel_number: 391 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: slow5_aux_set_string running... 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: slow5_aux_set_string type: 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: slow5_aux_set_string running done: ret = 0 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: checked_aux: median_before: 260.557264 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: checked_aux: read_number: 2287 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: checked_aux: start_mux: 2 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: checked_aux: start_time: 36886851 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: aux stuff done 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: slow5_write() 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: slow5_write() ret: 32408 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: slow5_rec_free() 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: function complete, returning 0 171s 21-Feb-25 15:03:06 - [DEBUG]: slow5_get_next return: 0 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: _record_type_validation running 171s 21-Feb-25 15:03:06 - [DEBUG]: _record_type_validation: doing aux stuff... 171s 21-Feb-25 15:03:06 - [DEBUG]: _record_type_validation: aux passed tests... 171s 21-Feb-25 15:03:06 - [DEBUG]: _record_type_validation: aux passed tests... 171s 21-Feb-25 15:03:06 - [DEBUG]: _record_type_validation: aux passed tests... 171s 21-Feb-25 15:03:06 - [DEBUG]: _record_type_validation: aux passed tests... 171s 21-Feb-25 15:03:06 - [DEBUG]: _record_type_validation: aux passed tests... 171s 21-Feb-25 15:03:06 - [DEBUG]: _record_type_validation: doing aux stuff... 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: _record_type_validation done 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: slow5_rec_init() 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: self.write assignments... 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: self.write.raw_signal malloc... 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: self.write.raw_signal malloc done 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: self.write assignments done 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: self.write processing raw_signal 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: self.write raw_signal done 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: aux stuff... 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: checked_aux: channel_number: 281 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: slow5_aux_set_string running... 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: slow5_aux_set_string type: 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: slow5_aux_set_string running done: ret = 0 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: checked_aux: median_before: 231.363533 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: checked_aux: read_number: 4019 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: checked_aux: start_mux: 1 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: checked_aux: start_time: 78470500 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: aux stuff done 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: slow5_write() 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: slow5_write() ret: 67260 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: slow5_rec_free() 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: function complete, returning 0 171s 21-Feb-25 15:03:06 - [DEBUG]: slow5_get_next return: 0 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: _record_type_validation running 171s 21-Feb-25 15:03:06 - [DEBUG]: _record_type_validation: doing aux stuff... 171s 21-Feb-25 15:03:06 - [DEBUG]: _record_type_validation: aux passed tests... 171s 21-Feb-25 15:03:06 - [DEBUG]: _record_type_validation: aux passed tests... 171s 21-Feb-25 15:03:06 - [DEBUG]: _record_type_validation: aux passed tests... 171s 21-Feb-25 15:03:06 - [DEBUG]: _record_type_validation: aux passed tests... 171s 21-Feb-25 15:03:06 - [DEBUG]: _record_type_validation: aux passed tests... 171s 21-Feb-25 15:03:06 - [DEBUG]: _record_type_validation: doing aux stuff... 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: _record_type_validation done 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: slow5_rec_init() 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: self.write assignments... 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: self.write.raw_signal malloc... 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: self.write.raw_signal malloc done 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: self.write assignments done 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: self.write processing raw_signal 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: self.write raw_signal done 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: aux stuff... 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: checked_aux: channel_number: 391 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: slow5_aux_set_string running... 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: slow5_aux_set_string type: 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: slow5_aux_set_string running done: ret = 0 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: checked_aux: median_before: 260.557264 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: checked_aux: read_number: 2287 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: checked_aux: start_mux: 2 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: checked_aux: start_time: 36886851 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: aux stuff done 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: slow5_write() 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: slow5_write() ret: 32408 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: slow5_rec_free() 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: function complete, returning 0 171s 21-Feb-25 15:03:06 - [DEBUG]: slow5_get_next return: 0 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: _record_type_validation running 171s 21-Feb-25 15:03:06 - [DEBUG]: _record_type_validation: doing aux stuff... 171s 21-Feb-25 15:03:06 - [DEBUG]: _record_type_validation: aux passed tests... 171s 21-Feb-25 15:03:06 - [DEBUG]: _record_type_validation: aux passed tests... 171s 21-Feb-25 15:03:06 - [DEBUG]: _record_type_validation: aux passed tests... 171s 21-Feb-25 15:03:06 - [DEBUG]: _record_type_validation: aux passed tests... 171s 21-Feb-25 15:03:06 - [DEBUG]: _record_type_validation: aux passed tests... 171s 21-Feb-25 15:03:06 - [DEBUG]: _record_type_validation: doing aux stuff... 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: _record_type_validation done 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: slow5_rec_init() 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: self.write assignments... 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: self.write.raw_signal malloc... 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: self.write.raw_signal malloc done 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: self.write assignments done 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: self.write processing raw_signal 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: self.write raw_signal done 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: aux stuff... 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: checked_aux: channel_number: 281 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: slow5_aux_set_string running... 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: slow5_aux_set_string type: 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: slow5_aux_set_string running done: ret = 0 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: checked_aux: median_before: 231.363533 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: checked_aux: read_number: 4019 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: checked_aux: start_mux: 1 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: checked_aux: start_time: 78470500 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: aux stuff done 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: slow5_write() 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: slow5_write() ret: 67298 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: slow5_rec_free() 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: function complete, returning 0 171s 21-Feb-25 15:03:06 - [DEBUG]: slow5_get_next return: 0 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: _record_type_validation running 171s 21-Feb-25 15:03:06 - [DEBUG]: _record_type_validation: doing aux stuff... 171s 21-Feb-25 15:03:06 - [DEBUG]: _record_type_validation: aux passed tests... 171s 21-Feb-25 15:03:06 - [DEBUG]: _record_type_validation: aux passed tests... 171s 21-Feb-25 15:03:06 - [DEBUG]: _record_type_validation: aux passed tests... 171s 21-Feb-25 15:03:06 - [DEBUG]: _record_type_validation: aux passed tests... 171s 21-Feb-25 15:03:06 - [DEBUG]: _record_type_validation: aux passed tests... 171s 21-Feb-25 15:03:06 - [DEBUG]: _record_type_validation: doing aux stuff... 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: _record_type_validation done 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: slow5_rec_init() 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: self.write assignments... 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: self.write.raw_signal malloc... 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: self.write.raw_signal malloc done 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: self.write assignments done 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: self.write processing raw_signal 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: self.write raw_signal done 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: aux stuff... 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: checked_aux: channel_number: 391 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: slow5_aux_set_string running... 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: slow5_aux_set_string type: 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: slow5_aux_set_string running done: ret = 0 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: checked_aux: median_before: 260.557264 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: checked_aux: read_number: 2287 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: checked_aux: start_mux: 2 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: checked_aux: start_time: 36886851 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: aux stuff done 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: slow5_write() 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: slow5_write() ret: 32446 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: slow5_rec_free() 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: function complete, returning 0 171s 21-Feb-25 15:03:06 - [DEBUG]: slow5_get_next return: -1 171s 21-Feb-25 15:03:06 - [DEBUG]: slow5_get_next reached end of file (EOF)(-1): -1: ['SLOW5_ERR_EOF', 'End Of File reached'] 171s 21-Feb-25 15:03:06 - [DEBUG]: examples/example2.slow5 closed 171s 21-Feb-25 15:03:06 - [DEBUG]: examples/example_write_aux.blow5 closed 171s 21-Feb-25 15:03:06 - [DEBUG]: FILE: examples/example_write_append_aux.blow5, mode: w 171s 21-Feb-25 15:03:06 - [DEBUG]: FILE: b'examples/example_write_append_aux.blow5', mode: b'w' 171s 21-Feb-25 15:03:06 - [DEBUG]: examples/example_write_aux.blow5 already closed 171s 21-Feb-25 15:03:06 - [DEBUG]: pathname: examples/example_write_aux.blow5 171s 21-Feb-25 15:03:06 - [DEBUG]: total_time_slow5_get_next: 0.0 seconds 171s 21-Feb-25 15:03:06 - [DEBUG]: total_time_yield_reads: 0.0 seconds 171s 21-Feb-25 15:03:06 - [DEBUG]: total_single_write_time: 0.03270745277404785 seconds 171s 21-Feb-25 15:03:06 - [DEBUG]: total_multi_write_signal_time: 0.0 seconds 171s 21-Feb-25 15:03:06 - [DEBUG]: total_multi_write_time: 0.0 seconds 171s 21-Feb-25 15:03:06 - [DEBUG]: FILE: examples/example2.slow5, mode: r 171s 21-Feb-25 15:03:06 - [DEBUG]: FILE: b'examples/example2.slow5', mode: b'r' 171s 21-Feb-25 15:03:06 - [DEBUG]: Number of read_groups: 4 171s 21-Feb-25 15:03:06 - [DEBUG]: pathname: examples/example2.slow5 171s 21-Feb-25 15:03:06 - [DEBUG]: total_time_slow5_get_next: 0.020482540130615234 seconds 171s 21-Feb-25 15:03:06 - [DEBUG]: total_time_yield_reads: 0.021427392959594727 seconds 171s 21-Feb-25 15:03:06 - [DEBUG]: total_single_write_time: 0.0 seconds 171s 21-Feb-25 15:03:06 - [DEBUG]: total_multi_write_signal_time: 0.0 seconds 171s 21-Feb-25 15:03:06 - [DEBUG]: total_multi_write_time: 0.0 seconds 171s 21-Feb-25 15:03:06 - [DEBUG]: slow5_get_next return: 0 171s 21-Feb-25 15:03:06 - [DEBUG]: get_aux_names starting 171s 21-Feb-25 15:03:06 - [DEBUG]: get_aux_names aux_len: 5 171s 21-Feb-25 15:03:06 - [DEBUG]: get_aux_types starting 171s 21-Feb-25 15:03:06 - [DEBUG]: get_aux_types aux_len: 5 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: _record_type_validation running 171s 21-Feb-25 15:03:06 - [DEBUG]: _record_type_validation: doing aux stuff... 171s 21-Feb-25 15:03:06 - [DEBUG]: _record_type_validation: aux passed tests... 171s 21-Feb-25 15:03:06 - [DEBUG]: _record_type_validation: aux passed tests... 171s 21-Feb-25 15:03:06 - [DEBUG]: _record_type_validation: aux passed tests... 171s 21-Feb-25 15:03:06 - [DEBUG]: _record_type_validation: aux passed tests... 171s 21-Feb-25 15:03:06 - [DEBUG]: _record_type_validation: aux passed tests... 171s 21-Feb-25 15:03:06 - [DEBUG]: _record_type_validation: doing aux stuff... 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: _record_type_validation done 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: checking header stuff... 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: writting header... 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: header written 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: slow5_rec_init() 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: self.write assignments... 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: self.write.raw_signal malloc... 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: self.write.raw_signal malloc done 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: self.write assignments done 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: self.write processing raw_signal 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: self.write raw_signal done 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: aux stuff... 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: checked_aux: channel_number: 281 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: slow5_aux_set_string running... 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: slow5_aux_set_string type: 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: slow5_aux_set_string running done: ret = 0 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: checked_aux: median_before: 231.363533 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: checked_aux: read_number: 4019 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: checked_aux: start_mux: 1 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: checked_aux: start_time: 78470500 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: aux stuff done 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: slow5_write() 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: slow5_write() ret: 153008 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: slow5_rec_free() 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: function complete, returning 0 171s 21-Feb-25 15:03:06 - [DEBUG]: slow5_get_next return: 0 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: _record_type_validation running 171s 21-Feb-25 15:03:06 - [DEBUG]: _record_type_validation: doing aux stuff... 171s 21-Feb-25 15:03:06 - [DEBUG]: _record_type_validation: aux passed tests... 171s 21-Feb-25 15:03:06 - [DEBUG]: _record_type_validation: aux passed tests... 171s 21-Feb-25 15:03:06 - [DEBUG]: _record_type_validation: aux passed tests... 171s 21-Feb-25 15:03:06 - [DEBUG]: _record_type_validation: aux passed tests... 171s 21-Feb-25 15:03:06 - [DEBUG]: _record_type_validation: aux passed tests... 171s 21-Feb-25 15:03:06 - [DEBUG]: _record_type_validation: doing aux stuff... 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: _record_type_validation done 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: slow5_rec_init() 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: self.write assignments... 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: self.write.raw_signal malloc... 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: self.write.raw_signal malloc done 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: self.write assignments done 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: self.write processing raw_signal 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: self.write raw_signal done 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: aux stuff... 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: checked_aux: channel_number: 391 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: slow5_aux_set_string running... 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: slow5_aux_set_string type: 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: slow5_aux_set_string running done: ret = 0 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: checked_aux: median_before: 260.557264 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: checked_aux: read_number: 2287 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: checked_aux: start_mux: 2 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: checked_aux: start_time: 36886851 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: aux stuff done 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: slow5_write() 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: slow5_write() ret: 76416 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: slow5_rec_free() 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: function complete, returning 0 171s 21-Feb-25 15:03:06 - [DEBUG]: slow5_get_next return: 0 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: _record_type_validation running 171s 21-Feb-25 15:03:06 - [DEBUG]: _record_type_validation: doing aux stuff... 171s 21-Feb-25 15:03:06 - [DEBUG]: _record_type_validation: aux passed tests... 171s 21-Feb-25 15:03:06 - [DEBUG]: _record_type_validation: aux passed tests... 171s 21-Feb-25 15:03:06 - [DEBUG]: _record_type_validation: aux passed tests... 171s 21-Feb-25 15:03:06 - [DEBUG]: _record_type_validation: aux passed tests... 171s 21-Feb-25 15:03:06 - [DEBUG]: _record_type_validation: aux passed tests... 171s 21-Feb-25 15:03:06 - [DEBUG]: _record_type_validation: doing aux stuff... 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: _record_type_validation done 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: slow5_rec_init() 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: self.write assignments... 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: self.write.raw_signal malloc... 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: self.write.raw_signal malloc done 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: self.write assignments done 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: self.write processing raw_signal 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: self.write raw_signal done 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: aux stuff... 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: checked_aux: channel_number: 281 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: slow5_aux_set_string running... 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: slow5_aux_set_string type: 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: slow5_aux_set_string running done: ret = 0 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: checked_aux: median_before: 231.363533 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: checked_aux: read_number: 4019 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: checked_aux: start_mux: 1 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: checked_aux: start_time: 78470500 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: aux stuff done 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: slow5_write() 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: slow5_write() ret: 153008 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: slow5_rec_free() 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: function complete, returning 0 171s 21-Feb-25 15:03:06 - [DEBUG]: slow5_get_next return: 0 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: _record_type_validation running 171s 21-Feb-25 15:03:06 - [DEBUG]: _record_type_validation: doing aux stuff... 171s 21-Feb-25 15:03:06 - [DEBUG]: _record_type_validation: aux passed tests... 171s 21-Feb-25 15:03:06 - [DEBUG]: _record_type_validation: aux passed tests... 171s 21-Feb-25 15:03:06 - [DEBUG]: _record_type_validation: aux passed tests... 171s 21-Feb-25 15:03:06 - [DEBUG]: _record_type_validation: aux passed tests... 171s 21-Feb-25 15:03:06 - [DEBUG]: _record_type_validation: aux passed tests... 171s 21-Feb-25 15:03:06 - [DEBUG]: _record_type_validation: doing aux stuff... 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: _record_type_validation done 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: slow5_rec_init() 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: self.write assignments... 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: self.write.raw_signal malloc... 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: self.write.raw_signal malloc done 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: self.write assignments done 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: self.write processing raw_signal 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: self.write raw_signal done 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: aux stuff... 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: checked_aux: channel_number: 391 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: slow5_aux_set_string running... 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: slow5_aux_set_string type: 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: slow5_aux_set_string running done: ret = 0 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: checked_aux: median_before: 260.557264 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: checked_aux: read_number: 2287 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: checked_aux: start_mux: 2 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: checked_aux: start_time: 36886851 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: aux stuff done 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: slow5_write() 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: slow5_write() ret: 76416 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: slow5_rec_free() 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: function complete, returning 0 171s 21-Feb-25 15:03:06 - [DEBUG]: slow5_get_next return: 0 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: _record_type_validation running 171s 21-Feb-25 15:03:06 - [DEBUG]: _record_type_validation: doing aux stuff... 171s 21-Feb-25 15:03:06 - [DEBUG]: _record_type_validation: aux passed tests... 171s 21-Feb-25 15:03:06 - [DEBUG]: _record_type_validation: aux passed tests... 171s 21-Feb-25 15:03:06 - [DEBUG]: _record_type_validation: aux passed tests... 171s 21-Feb-25 15:03:06 - [DEBUG]: _record_type_validation: aux passed tests... 171s 21-Feb-25 15:03:06 - [DEBUG]: _record_type_validation: aux passed tests... 171s 21-Feb-25 15:03:06 - [DEBUG]: _record_type_validation: doing aux stuff... 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: _record_type_validation done 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: slow5_rec_init() 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: self.write assignments... 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: self.write.raw_signal malloc... 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: self.write.raw_signal malloc done 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: self.write assignments done 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: self.write processing raw_signal 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: self.write raw_signal done 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: aux stuff... 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: checked_aux: channel_number: 281 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: slow5_aux_set_string running... 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: slow5_aux_set_string type: 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: slow5_aux_set_string running done: ret = 0 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: checked_aux: median_before: 231.363533 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: checked_aux: read_number: 4019 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: checked_aux: start_mux: 1 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: checked_aux: start_time: 78470500 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: aux stuff done 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: slow5_write() 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: slow5_write() ret: 153008 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: slow5_rec_free() 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: function complete, returning 0 171s 21-Feb-25 15:03:06 - [DEBUG]: slow5_get_next return: 0 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: _record_type_validation running 171s 21-Feb-25 15:03:06 - [DEBUG]: _record_type_validation: doing aux stuff... 171s 21-Feb-25 15:03:06 - [DEBUG]: _record_type_validation: aux passed tests... 171s 21-Feb-25 15:03:06 - [DEBUG]: _record_type_validation: aux passed tests... 171s 21-Feb-25 15:03:06 - [DEBUG]: _record_type_validation: aux passed tests... 171s 21-Feb-25 15:03:06 - [DEBUG]: _record_type_validation: aux passed tests... 171s 21-Feb-25 15:03:06 - [DEBUG]: _record_type_validation: aux passed tests... 171s 21-Feb-25 15:03:06 - [DEBUG]: _record_type_validation: doing aux stuff... 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: _record_type_validation done 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: slow5_rec_init() 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: self.write assignments... 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: self.write.raw_signal malloc... 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: self.write.raw_signal malloc done 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: self.write assignments done 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: self.write processing raw_signal 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: self.write raw_signal done 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: aux stuff... 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: checked_aux: channel_number: 391 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: slow5_aux_set_string running... 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: slow5_aux_set_string type: 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: slow5_aux_set_string running done: ret = 0 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: checked_aux: median_before: 260.557264 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: checked_aux: read_number: 2287 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: checked_aux: start_mux: 2 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: checked_aux: start_time: 36886851 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: aux stuff done 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: slow5_write() 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: slow5_write() ret: 76416 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: slow5_rec_free() 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: function complete, returning 0 171s 21-Feb-25 15:03:06 - [DEBUG]: slow5_get_next return: 0 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: _record_type_validation running 171s 21-Feb-25 15:03:06 - [DEBUG]: _record_type_validation: doing aux stuff... 171s 21-Feb-25 15:03:06 - [DEBUG]: _record_type_validation: aux passed tests... 171s 21-Feb-25 15:03:06 - [DEBUG]: _record_type_validation: aux passed tests... 171s 21-Feb-25 15:03:06 - [DEBUG]: _record_type_validation: aux passed tests... 171s 21-Feb-25 15:03:06 - [DEBUG]: _record_type_validation: aux passed tests... 171s 21-Feb-25 15:03:06 - [DEBUG]: _record_type_validation: aux passed tests... 171s 21-Feb-25 15:03:06 - [DEBUG]: _record_type_validation: doing aux stuff... 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: _record_type_validation done 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: slow5_rec_init() 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: self.write assignments... 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: self.write.raw_signal malloc... 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: self.write.raw_signal malloc done 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: self.write assignments done 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: self.write processing raw_signal 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: self.write raw_signal done 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: aux stuff... 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: checked_aux: channel_number: 281 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: slow5_aux_set_string running... 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: slow5_aux_set_string type: 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: slow5_aux_set_string running done: ret = 0 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: checked_aux: median_before: 231.363533 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: checked_aux: read_number: 4019 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: checked_aux: start_mux: 1 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: checked_aux: start_time: 78470500 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: aux stuff done 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: slow5_write() 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: slow5_write() ret: 153042 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: slow5_rec_free() 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: function complete, returning 0 171s 21-Feb-25 15:03:06 - [DEBUG]: slow5_get_next return: 0 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: _record_type_validation running 171s 21-Feb-25 15:03:06 - [DEBUG]: _record_type_validation: doing aux stuff... 171s 21-Feb-25 15:03:06 - [DEBUG]: _record_type_validation: aux passed tests... 171s 21-Feb-25 15:03:06 - [DEBUG]: _record_type_validation: aux passed tests... 171s 21-Feb-25 15:03:06 - [DEBUG]: _record_type_validation: aux passed tests... 171s 21-Feb-25 15:03:06 - [DEBUG]: _record_type_validation: aux passed tests... 171s 21-Feb-25 15:03:06 - [DEBUG]: _record_type_validation: aux passed tests... 171s 21-Feb-25 15:03:06 - [DEBUG]: _record_type_validation: doing aux stuff... 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: _record_type_validation done 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: slow5_rec_init() 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: self.write assignments... 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: self.write.raw_signal malloc... 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: self.write.raw_signal malloc done 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: self.write assignments done 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: self.write processing raw_signal 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: self.write raw_signal done 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: aux stuff... 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: checked_aux: channel_number: 391 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: slow5_aux_set_string running... 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: slow5_aux_set_string type: 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: slow5_aux_set_string running done: ret = 0 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: checked_aux: median_before: 260.557264 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: checked_aux: read_number: 2287 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: checked_aux: start_mux: 2 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: checked_aux: start_time: 36886851 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: aux stuff done 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: slow5_write() 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: slow5_write() ret: 76450 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: slow5_rec_free() 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: function complete, returning 0 171s 21-Feb-25 15:03:06 - [DEBUG]: slow5_get_next return: -1 171s 21-Feb-25 15:03:06 - [DEBUG]: slow5_get_next reached end of file (EOF)(-1): -1: ['SLOW5_ERR_EOF', 'End Of File reached'] 171s 21-Feb-25 15:03:06 - [DEBUG]: examples/example2.slow5 closed 171s 21-Feb-25 15:03:06 - [DEBUG]: examples/example_write_append_aux.blow5 closed 171s 21-Feb-25 15:03:06 - [DEBUG]: FILE: examples/example_write_append_aux.blow5, mode: a 171s 21-Feb-25 15:03:06 - [DEBUG]: FILE: b'examples/example_write_append_aux.blow5', mode: b'a' 171s 21-Feb-25 15:03:06 - [DEBUG]: examples/example_write_append.blow5 already closed 171s 21-Feb-25 15:03:06 - [DEBUG]: pathname: examples/example_write_append.blow5 171s 21-Feb-25 15:03:06 - [DEBUG]: total_time_slow5_get_next: 0.0 seconds 171s 21-Feb-25 15:03:06 - [DEBUG]: total_time_yield_reads: 0.0 seconds 171s 21-Feb-25 15:03:06 - [DEBUG]: total_single_write_time: 0.035384416580200195 seconds 171s 21-Feb-25 15:03:06 - [DEBUG]: total_multi_write_signal_time: 0.0 seconds 171s 21-Feb-25 15:03:06 - [DEBUG]: total_multi_write_time: 0.0 seconds 171s 21-Feb-25 15:03:06 - [DEBUG]: FILE: examples/example2.slow5, mode: r 171s 21-Feb-25 15:03:06 - [DEBUG]: FILE: b'examples/example2.slow5', mode: b'r' 171s 21-Feb-25 15:03:06 - [DEBUG]: Number of read_groups: 4 171s 21-Feb-25 15:03:06 - [DEBUG]: pathname: examples/example2.slow5 171s 21-Feb-25 15:03:06 - [DEBUG]: total_time_slow5_get_next: 0.0202791690826416 seconds 171s 21-Feb-25 15:03:06 - [DEBUG]: total_time_yield_reads: 0.02115011215209961 seconds 171s 21-Feb-25 15:03:06 - [DEBUG]: total_single_write_time: 0.0 seconds 171s 21-Feb-25 15:03:06 - [DEBUG]: total_multi_write_signal_time: 0.0 seconds 171s 21-Feb-25 15:03:06 - [DEBUG]: total_multi_write_time: 0.0 seconds 171s 21-Feb-25 15:03:06 - [DEBUG]: slow5_get_next return: 0 171s 21-Feb-25 15:03:06 - [DEBUG]: get_aux_names starting 171s 21-Feb-25 15:03:06 - [DEBUG]: get_aux_names aux_len: 5 171s 21-Feb-25 15:03:06 - [DEBUG]: get_aux_types starting 171s 21-Feb-25 15:03:06 - [DEBUG]: get_aux_types aux_len: 5 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: _record_type_validation running 171s 21-Feb-25 15:03:06 - [DEBUG]: _record_type_validation: doing aux stuff... 171s 21-Feb-25 15:03:06 - [DEBUG]: _record_type_validation: aux passed tests... 171s 21-Feb-25 15:03:06 - [DEBUG]: _record_type_validation: aux passed tests... 171s 21-Feb-25 15:03:06 - [DEBUG]: _record_type_validation: aux passed tests... 171s 21-Feb-25 15:03:06 - [DEBUG]: _record_type_validation: aux passed tests... 171s 21-Feb-25 15:03:06 - [DEBUG]: _record_type_validation: aux passed tests... 171s 21-Feb-25 15:03:06 - [DEBUG]: _record_type_validation: doing aux stuff... 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: _record_type_validation done 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: slow5_rec_init() 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: self.write assignments... 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: self.write.raw_signal malloc... 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: self.write.raw_signal malloc done 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: self.write assignments done 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: self.write processing raw_signal 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: self.write raw_signal done 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: aux stuff... 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: checked_aux: channel_number: 281 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: slow5_aux_set_string running... 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: slow5_aux_set_string type: 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: slow5_aux_set_string running done: ret = 0 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: checked_aux: median_before: 231.363533 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: checked_aux: read_number: 4019 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: checked_aux: start_mux: 1 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: checked_aux: start_time: 78470500 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: aux stuff done 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: slow5_write() 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: slow5_write() ret: 153015 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: slow5_rec_free() 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: function complete, returning 0 171s 21-Feb-25 15:03:06 - [DEBUG]: slow5_get_next return: 0 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: _record_type_validation running 171s 21-Feb-25 15:03:06 - [DEBUG]: _record_type_validation: doing aux stuff... 171s 21-Feb-25 15:03:06 - [DEBUG]: _record_type_validation: aux passed tests... 171s 21-Feb-25 15:03:06 - [DEBUG]: _record_type_validation: aux passed tests... 171s 21-Feb-25 15:03:06 - [DEBUG]: _record_type_validation: aux passed tests... 171s 21-Feb-25 15:03:06 - [DEBUG]: _record_type_validation: aux passed tests... 171s 21-Feb-25 15:03:06 - [DEBUG]: _record_type_validation: aux passed tests... 171s 21-Feb-25 15:03:06 - [DEBUG]: _record_type_validation: doing aux stuff... 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: _record_type_validation done 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: slow5_rec_init() 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: self.write assignments... 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: self.write.raw_signal malloc... 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: self.write.raw_signal malloc done 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: self.write assignments done 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: self.write processing raw_signal 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: self.write raw_signal done 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: aux stuff... 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: checked_aux: channel_number: 391 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: slow5_aux_set_string running... 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: slow5_aux_set_string type: 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: slow5_aux_set_string running done: ret = 0 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: checked_aux: median_before: 260.557264 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: checked_aux: read_number: 2287 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: checked_aux: start_mux: 2 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: checked_aux: start_time: 36886851 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: aux stuff done 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: slow5_write() 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: slow5_write() ret: 76423 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: slow5_rec_free() 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: function complete, returning 0 171s 21-Feb-25 15:03:06 - [DEBUG]: slow5_get_next return: 0 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: _record_type_validation running 171s 21-Feb-25 15:03:06 - [DEBUG]: _record_type_validation: doing aux stuff... 171s 21-Feb-25 15:03:06 - [DEBUG]: _record_type_validation: aux passed tests... 171s 21-Feb-25 15:03:06 - [DEBUG]: _record_type_validation: aux passed tests... 171s 21-Feb-25 15:03:06 - [DEBUG]: _record_type_validation: aux passed tests... 171s 21-Feb-25 15:03:06 - [DEBUG]: _record_type_validation: aux passed tests... 171s 21-Feb-25 15:03:06 - [DEBUG]: _record_type_validation: aux passed tests... 171s 21-Feb-25 15:03:06 - [DEBUG]: _record_type_validation: doing aux stuff... 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: _record_type_validation done 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: slow5_rec_init() 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: self.write assignments... 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: self.write.raw_signal malloc... 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: self.write.raw_signal malloc done 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: self.write assignments done 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: self.write processing raw_signal 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: self.write raw_signal done 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: aux stuff... 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: checked_aux: channel_number: 281 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: slow5_aux_set_string running... 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: slow5_aux_set_string type: 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: slow5_aux_set_string running done: ret = 0 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: checked_aux: median_before: 231.363533 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: checked_aux: read_number: 4019 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: checked_aux: start_mux: 1 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: checked_aux: start_time: 78470500 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: aux stuff done 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: slow5_write() 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: slow5_write() ret: 153015 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: slow5_rec_free() 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: function complete, returning 0 171s 21-Feb-25 15:03:06 - [DEBUG]: slow5_get_next return: 0 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: _record_type_validation running 171s 21-Feb-25 15:03:06 - [DEBUG]: _record_type_validation: doing aux stuff... 171s 21-Feb-25 15:03:06 - [DEBUG]: _record_type_validation: aux passed tests... 171s 21-Feb-25 15:03:06 - [DEBUG]: _record_type_validation: aux passed tests... 171s 21-Feb-25 15:03:06 - [DEBUG]: _record_type_validation: aux passed tests... 171s 21-Feb-25 15:03:06 - [DEBUG]: _record_type_validation: aux passed tests... 171s 21-Feb-25 15:03:06 - [DEBUG]: _record_type_validation: aux passed tests... 171s 21-Feb-25 15:03:06 - [DEBUG]: _record_type_validation: doing aux stuff... 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: _record_type_validation done 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: slow5_rec_init() 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: self.write assignments... 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: self.write.raw_signal malloc... 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: self.write.raw_signal malloc done 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: self.write assignments done 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: self.write processing raw_signal 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: self.write raw_signal done 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: aux stuff... 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: checked_aux: channel_number: 391 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: slow5_aux_set_string running... 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: slow5_aux_set_string type: 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: slow5_aux_set_string running done: ret = 0 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: checked_aux: median_before: 260.557264 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: checked_aux: read_number: 2287 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: checked_aux: start_mux: 2 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: checked_aux: start_time: 36886851 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: aux stuff done 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: slow5_write() 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: slow5_write() ret: 76423 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: slow5_rec_free() 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: function complete, returning 0 171s 21-Feb-25 15:03:06 - [DEBUG]: slow5_get_next return: 0 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: _record_type_validation running 171s 21-Feb-25 15:03:06 - [DEBUG]: _record_type_validation: doing aux stuff... 171s 21-Feb-25 15:03:06 - [DEBUG]: _record_type_validation: aux passed tests... 171s 21-Feb-25 15:03:06 - [DEBUG]: _record_type_validation: aux passed tests... 171s 21-Feb-25 15:03:06 - [DEBUG]: _record_type_validation: aux passed tests... 171s 21-Feb-25 15:03:06 - [DEBUG]: _record_type_validation: aux passed tests... 171s 21-Feb-25 15:03:06 - [DEBUG]: _record_type_validation: aux passed tests... 171s 21-Feb-25 15:03:06 - [DEBUG]: _record_type_validation: doing aux stuff... 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: _record_type_validation done 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: slow5_rec_init() 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: self.write assignments... 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: self.write.raw_signal malloc... 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: self.write.raw_signal malloc done 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: self.write assignments done 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: self.write processing raw_signal 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: self.write raw_signal done 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: aux stuff... 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: checked_aux: channel_number: 281 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: slow5_aux_set_string running... 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: slow5_aux_set_string type: 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: slow5_aux_set_string running done: ret = 0 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: checked_aux: median_before: 231.363533 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: checked_aux: read_number: 4019 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: checked_aux: start_mux: 1 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: checked_aux: start_time: 78470500 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: aux stuff done 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: slow5_write() 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: slow5_write() ret: 153015 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: slow5_rec_free() 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: function complete, returning 0 171s 21-Feb-25 15:03:06 - [DEBUG]: slow5_get_next return: 0 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: _record_type_validation running 171s 21-Feb-25 15:03:06 - [DEBUG]: _record_type_validation: doing aux stuff... 171s 21-Feb-25 15:03:06 - [DEBUG]: _record_type_validation: aux passed tests... 171s 21-Feb-25 15:03:06 - [DEBUG]: _record_type_validation: aux passed tests... 171s 21-Feb-25 15:03:06 - [DEBUG]: _record_type_validation: aux passed tests... 171s 21-Feb-25 15:03:06 - [DEBUG]: _record_type_validation: aux passed tests... 171s 21-Feb-25 15:03:06 - [DEBUG]: _record_type_validation: aux passed tests... 171s 21-Feb-25 15:03:06 - [DEBUG]: _record_type_validation: doing aux stuff... 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: _record_type_validation done 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: slow5_rec_init() 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: self.write assignments... 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: self.write.raw_signal malloc... 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: self.write.raw_signal malloc done 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: self.write assignments done 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: self.write processing raw_signal 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: self.write raw_signal done 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: aux stuff... 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: checked_aux: channel_number: 391 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: slow5_aux_set_string running... 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: slow5_aux_set_string type: 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: slow5_aux_set_string running done: ret = 0 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: checked_aux: median_before: 260.557264 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: checked_aux: read_number: 2287 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: checked_aux: start_mux: 2 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: checked_aux: start_time: 36886851 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: aux stuff done 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: slow5_write() 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: slow5_write() ret: 76423 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: slow5_rec_free() 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: function complete, returning 0 171s 21-Feb-25 15:03:06 - [DEBUG]: slow5_get_next return: 0 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: _record_type_validation running 171s 21-Feb-25 15:03:06 - [DEBUG]: _record_type_validation: doing aux stuff... 171s 21-Feb-25 15:03:06 - [DEBUG]: _record_type_validation: aux passed tests... 171s 21-Feb-25 15:03:06 - [DEBUG]: _record_type_validation: aux passed tests... 171s 21-Feb-25 15:03:06 - [DEBUG]: _record_type_validation: aux passed tests... 171s 21-Feb-25 15:03:06 - [DEBUG]: _record_type_validation: aux passed tests... 171s 21-Feb-25 15:03:06 - [DEBUG]: _record_type_validation: aux passed tests... 171s 21-Feb-25 15:03:06 - [DEBUG]: _record_type_validation: doing aux stuff... 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: _record_type_validation done 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: slow5_rec_init() 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: self.write assignments... 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: self.write.raw_signal malloc... 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: self.write.raw_signal malloc done 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: self.write assignments done 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: self.write processing raw_signal 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: self.write raw_signal done 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: aux stuff... 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: checked_aux: channel_number: 281 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: slow5_aux_set_string running... 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: slow5_aux_set_string type: 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: slow5_aux_set_string running done: ret = 0 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: checked_aux: median_before: 231.363533 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: checked_aux: read_number: 4019 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: checked_aux: start_mux: 1 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: checked_aux: start_time: 78470500 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: aux stuff done 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: slow5_write() 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: slow5_write() ret: 153049 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: slow5_rec_free() 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: function complete, returning 0 171s 21-Feb-25 15:03:06 - [DEBUG]: slow5_get_next return: 0 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: _record_type_validation running 171s 21-Feb-25 15:03:06 - [DEBUG]: _record_type_validation: doing aux stuff... 171s 21-Feb-25 15:03:06 - [DEBUG]: _record_type_validation: aux passed tests... 171s 21-Feb-25 15:03:06 - [DEBUG]: _record_type_validation: aux passed tests... 171s 21-Feb-25 15:03:06 - [DEBUG]: _record_type_validation: aux passed tests... 171s 21-Feb-25 15:03:06 - [DEBUG]: _record_type_validation: aux passed tests... 171s 21-Feb-25 15:03:06 - [DEBUG]: _record_type_validation: aux passed tests... 171s 21-Feb-25 15:03:06 - [DEBUG]: _record_type_validation: doing aux stuff... 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: _record_type_validation done 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: slow5_rec_init() 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: self.write assignments... 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: self.write.raw_signal malloc... 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: self.write.raw_signal malloc done 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: self.write assignments done 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: self.write processing raw_signal 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: self.write raw_signal done 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: aux stuff... 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: checked_aux: channel_number: 391 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: slow5_aux_set_string running... 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: slow5_aux_set_string type: 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: slow5_aux_set_string running done: ret = 0 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: checked_aux: median_before: 260.557264 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: checked_aux: read_number: 2287 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: checked_aux: start_mux: 2 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: checked_aux: start_time: 36886851 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: aux stuff done 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: slow5_write() 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: slow5_write() ret: 76457 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: slow5_rec_free() 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: function complete, returning 0 171s 21-Feb-25 15:03:06 - [DEBUG]: slow5_get_next return: -1 171s 21-Feb-25 15:03:06 - [DEBUG]: slow5_get_next reached end of file (EOF)(-1): -1: ['SLOW5_ERR_EOF', 'End Of File reached'] 171s 21-Feb-25 15:03:06 - [DEBUG]: examples/example2.slow5 closed 171s 21-Feb-25 15:03:06 - [DEBUG]: examples/example_write_append_aux.blow5 closed 171s 21-Feb-25 15:03:06 - [DEBUG]: FILE: examples/example2.slow5, mode: r 171s 21-Feb-25 15:03:06 - [DEBUG]: FILE: b'examples/example2.slow5', mode: b'r' 171s 21-Feb-25 15:03:06 - [DEBUG]: Number of read_groups: 4 171s 21-Feb-25 15:03:06 - [DEBUG]: slow5_get_next_multi return: 3 171s 21-Feb-25 15:03:06 - [DEBUG]: get_aux_names starting 171s 21-Feb-25 15:03:06 - [DEBUG]: get_aux_names aux_len: 5 171s 21-Feb-25 15:03:06 - [DEBUG]: get_aux_types starting 171s 21-Feb-25 15:03:06 - [DEBUG]: get_aux_types aux_len: 5 171s 21-Feb-25 15:03:06 - [DEBUG]: slow5_get_next_multi return: 3 171s 21-Feb-25 15:03:06 - [DEBUG]: slow5_get_next_multi return: 2 171s 21-Feb-25 15:03:06 - [DEBUG]: slow5_get_next_multi has no more batches - batchsize:3 ret:2 171s 21-Feb-25 15:03:06 - [DEBUG]: seq_reads_multi timings: 171s 21-Feb-25 15:03:06 - [DEBUG]: aux_total_time: 0.00022864341735839844 171s 21-Feb-25 15:03:06 - [DEBUG]: primary_total_time: 0.00016546249389648438 171s 21-Feb-25 15:03:06 - [DEBUG]: pA_total_time: 0.001271963119506836 171s 21-Feb-25 15:03:06 - [DEBUG]: signal_total_time: 0.0001513957977294922 171s 21-Feb-25 15:03:06 - [DEBUG]: examples/example2.slow5 closed 171s 21-Feb-25 15:03:06 - [DEBUG]: FILE: examples/example2.slow5, mode: r 171s 21-Feb-25 15:03:06 - [DEBUG]: FILE: b'examples/example2.slow5', mode: b'r' 171s 21-Feb-25 15:03:06 - [DEBUG]: Number of read_groups: 4 171s 21-Feb-25 15:03:06 - [DEBUG]: pathname: examples/example2.slow5 171s 21-Feb-25 15:03:06 - [DEBUG]: total_time_slow5_get_next: 0.017142534255981445 seconds 171s 21-Feb-25 15:03:06 - [DEBUG]: total_time_yield_reads: 0.001687765121459961 seconds 171s 21-Feb-25 15:03:06 - [DEBUG]: total_single_write_time: 0.0 seconds 171s 21-Feb-25 15:03:06 - [DEBUG]: total_multi_write_signal_time: 0.0 seconds 171s 21-Feb-25 15:03:06 - [DEBUG]: total_multi_write_time: 0.0 seconds 171s 21-Feb-25 15:03:06 - [DEBUG]: FILE: examples/example2.slow5, mode: r 171s 21-Feb-25 15:03:06 - [DEBUG]: Creating/loading index... 171s 21-Feb-25 15:03:06 - [DEBUG]: Setting up batching... 171s 21-Feb-25 15:03:06 - [DEBUG]: read_list: ['r0', 'r1', 'r2', 'r3', 'r4', 'r5', '0a238451-b9ed-446d-a152-badd074006c4', '0d624d4b-671f-40b8-9798-84f2ccc4d7fc'] 171s 21-Feb-25 15:03:06 - [DEBUG]: batch for loop start 171s 21-Feb-25 15:03:06 - [DEBUG]: Batch: r0,r1,r2 171s 21-Feb-25 15:03:06 - [DEBUG]: Starting rid assignment 171s 21-Feb-25 15:03:06 - [DEBUG]: readID: r0, bin: b'r0' 171s 21-Feb-25 15:03:06 - [DEBUG]: readID: r1, bin: b'r1' 171s 21-Feb-25 15:03:06 - [DEBUG]: readID: r2, bin: b'r2' 171s 21-Feb-25 15:03:06 - [DEBUG]: rid assignment complete 171s 21-Feb-25 15:03:06 - [DEBUG]: slow5_get_batch: num_reads: 3 171s 21-Feb-25 15:03:06 - [DEBUG]: get_read_multi slow5_get_batch ret: 3 171s 21-Feb-25 15:03:06 - [DEBUG]: get_aux_names starting 171s 21-Feb-25 15:03:06 - [DEBUG]: get_aux_names aux_len: 5 171s 21-Feb-25 15:03:06 - [DEBUG]: get_aux_types starting 171s 21-Feb-25 15:03:06 - [DEBUG]: get_aux_types aux_len: 5 171s 21-Feb-25 15:03:06 - [DEBUG]: Batch: r3,r4,r5 171s 21-Feb-25 15:03:06 - [DEBUG]: Starting rid assignment 171s 21-Feb-25 15:03:06 - [DEBUG]: readID: r3, bin: b'r3' 171s 21-Feb-25 15:03:06 - [DEBUG]: readID: r4, bin: b'r4' 171s 21-Feb-25 15:03:06 - [DEBUG]: readID: r5, bin: b'r5' 171s 21-Feb-25 15:03:06 - [DEBUG]: rid assignment complete 171s 21-Feb-25 15:03:06 - [DEBUG]: slow5_get_batch: num_reads: 3 171s 21-Feb-25 15:03:06 - [DEBUG]: get_read_multi slow5_get_batch ret: 3 171s 21-Feb-25 15:03:06 - [DEBUG]: Batch: 0a238451-b9ed-446d-a152-badd074006c4,0d624d4b-671f-40b8-9798-84f2ccc4d7fc 171s 21-Feb-25 15:03:06 - [DEBUG]: Starting rid assignment 171s 21-Feb-25 15:03:06 - [DEBUG]: readID: 0a238451-b9ed-446d-a152-badd074006c4, bin: b'0a238451-b9ed-446d-a152-badd074006c4' 171s 21-Feb-25 15:03:06 - [DEBUG]: readID: 0d624d4b-671f-40b8-9798-84f2ccc4d7fc, bin: b'0d624d4b-671f-40b8-9798-84f2ccc4d7fc' 171s 21-Feb-25 15:03:06 - [DEBUG]: rid assignment complete 171s 21-Feb-25 15:03:06 - [DEBUG]: slow5_get_batch: num_reads: 2 171s 21-Feb-25 15:03:06 - [DEBUG]: get_read_multi slow5_get_batch ret: 2 171s 21-Feb-25 15:03:06 - [DEBUG]: seq_reads_multi timings: 171s 21-Feb-25 15:03:06 - [DEBUG]: examples/example2.slow5 closed 171s 21-Feb-25 15:03:06 - [DEBUG]: FILE: examples/example_write_aux_multi.slow5, mode: w 171s 21-Feb-25 15:03:06 - [DEBUG]: FILE: b'examples/example_write_aux_multi.slow5', mode: b'w' 171s 21-Feb-25 15:03:06 - [DEBUG]: Not writing blow5, skipping compression steps 171s 21-Feb-25 15:03:06 - [DEBUG]: examples/example_write_append_aux.blow5 already closed 171s 21-Feb-25 15:03:06 - [DEBUG]: pathname: examples/example_write_append_aux.blow5 171s 21-Feb-25 15:03:06 - [DEBUG]: total_time_slow5_get_next: 0.0 seconds 171s 21-Feb-25 15:03:06 - [DEBUG]: total_time_yield_reads: 0.0 seconds 171s 21-Feb-25 15:03:06 - [DEBUG]: total_single_write_time: 0.03608512878417969 seconds 171s 21-Feb-25 15:03:06 - [DEBUG]: total_multi_write_signal_time: 0.0 seconds 171s 21-Feb-25 15:03:06 - [DEBUG]: total_multi_write_time: 0.0 seconds 171s 21-Feb-25 15:03:06 - [DEBUG]: FILE: examples/example2.slow5, mode: r 171s 21-Feb-25 15:03:06 - [DEBUG]: FILE: b'examples/example2.slow5', mode: b'r' 171s 21-Feb-25 15:03:06 - [DEBUG]: Number of read_groups: 4 171s 21-Feb-25 15:03:06 - [DEBUG]: pathname: examples/example2.slow5 171s 21-Feb-25 15:03:06 - [DEBUG]: total_time_slow5_get_next: 0.020398378372192383 seconds 171s 21-Feb-25 15:03:06 - [DEBUG]: total_time_yield_reads: 0.021289587020874023 seconds 171s 21-Feb-25 15:03:06 - [DEBUG]: total_single_write_time: 0.0 seconds 171s 21-Feb-25 15:03:06 - [DEBUG]: total_multi_write_signal_time: 0.0 seconds 171s 21-Feb-25 15:03:06 - [DEBUG]: total_multi_write_time: 0.0 seconds 171s 21-Feb-25 15:03:06 - [DEBUG]: slow5_get_next return: 0 171s 21-Feb-25 15:03:06 - [DEBUG]: get_aux_names starting 171s 21-Feb-25 15:03:06 - [DEBUG]: get_aux_names aux_len: 5 171s 21-Feb-25 15:03:06 - [DEBUG]: get_aux_types starting 171s 21-Feb-25 15:03:06 - [DEBUG]: get_aux_types aux_len: 5 171s 21-Feb-25 15:03:06 - [DEBUG]: slow5_get_next return: 0 171s 21-Feb-25 15:03:06 - [DEBUG]: slow5_get_next return: 0 171s 21-Feb-25 15:03:06 - [DEBUG]: slow5_get_next return: 0 171s 21-Feb-25 15:03:06 - [DEBUG]: slow5_get_next return: 0 171s 21-Feb-25 15:03:06 - [DEBUG]: slow5_get_next return: 0 171s 21-Feb-25 15:03:06 - [DEBUG]: slow5_get_next return: 0 171s 21-Feb-25 15:03:06 - [DEBUG]: slow5_get_next return: 0 171s 21-Feb-25 15:03:06 - [DEBUG]: slow5_get_next return: -1 171s 21-Feb-25 15:03:06 - [DEBUG]: slow5_get_next reached end of file (EOF)(-1): -1: ['SLOW5_ERR_EOF', 'End Of File reached'] 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record_batch: Setting up batching... 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record_batch: batch for loop start 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record_batch: _record_type_validation running 171s 21-Feb-25 15:03:06 - [DEBUG]: _record_type_validation: doing aux stuff... 171s 21-Feb-25 15:03:06 - [DEBUG]: _record_type_validation: aux passed tests... 171s 21-Feb-25 15:03:06 - [DEBUG]: _record_type_validation: aux passed tests... 171s 21-Feb-25 15:03:06 - [DEBUG]: _record_type_validation: aux passed tests... 171s 21-Feb-25 15:03:06 - [DEBUG]: _record_type_validation: aux passed tests... 171s 21-Feb-25 15:03:06 - [DEBUG]: _record_type_validation: aux passed tests... 171s 21-Feb-25 15:03:06 - [DEBUG]: _record_type_validation: aux stuff done 171s 21-Feb-25 15:03:06 - [DEBUG]: _record_type_validation: doing aux stuff... 171s 21-Feb-25 15:03:06 - [DEBUG]: _record_type_validation: aux passed tests... 171s 21-Feb-25 15:03:06 - [DEBUG]: _record_type_validation: aux passed tests... 171s 21-Feb-25 15:03:06 - [DEBUG]: _record_type_validation: aux passed tests... 171s 21-Feb-25 15:03:06 - [DEBUG]: _record_type_validation: aux passed tests... 171s 21-Feb-25 15:03:06 - [DEBUG]: _record_type_validation: aux passed tests... 171s 21-Feb-25 15:03:06 - [DEBUG]: _record_type_validation: aux stuff done 171s 21-Feb-25 15:03:06 - [DEBUG]: _record_type_validation: doing aux stuff... 171s 21-Feb-25 15:03:06 - [DEBUG]: _record_type_validation: aux passed tests... 171s 21-Feb-25 15:03:06 - [DEBUG]: _record_type_validation: aux passed tests... 171s 21-Feb-25 15:03:06 - [DEBUG]: _record_type_validation: aux passed tests... 171s 21-Feb-25 15:03:06 - [DEBUG]: _record_type_validation: aux passed tests... 171s 21-Feb-25 15:03:06 - [DEBUG]: _record_type_validation: aux passed tests... 171s 21-Feb-25 15:03:06 - [DEBUG]: _record_type_validation: aux stuff done 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record_batch: _record_type_validation done 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record_batch: checking header stuff... 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record_batch: writting header... 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record_batch: header written 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record_batch: slow5_rec_init() 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record_batch: self.write assignments... 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record_batch: self.write.raw_signal malloc... 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record_batch: self.write.raw_signal malloc done 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record_batch: self.write assignments done 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record_batch: self.write processing raw_signal 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record_batch: self.write raw_signal done 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record_batch: aux stuff... 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record_batch: checked_aux: channel_number: 281 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record_batch: slow5_aux_set_string running... 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record_batch: slow5_aux_set_string type: 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record_batch: slow5_aux_set_string running done: ret = 0 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record_batch: checked_aux: median_before: 231.363533 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record_batch: checked_aux: read_number: 4019 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record_batch: checked_aux: start_mux: 1 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record_batch: checked_aux: start_time: 78470500 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record_batch: aux stuff done 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record_batch: slow5_rec_init() 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record_batch: self.write assignments... 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record_batch: self.write.raw_signal malloc... 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record_batch: self.write.raw_signal malloc done 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record_batch: self.write assignments done 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record_batch: self.write processing raw_signal 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record_batch: self.write raw_signal done 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record_batch: aux stuff... 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record_batch: checked_aux: channel_number: 391 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record_batch: slow5_aux_set_string running... 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record_batch: slow5_aux_set_string type: 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record_batch: slow5_aux_set_string running done: ret = 0 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record_batch: checked_aux: median_before: 260.557264 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record_batch: checked_aux: read_number: 2287 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record_batch: checked_aux: start_mux: 2 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record_batch: checked_aux: start_time: 36886851 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record_batch: aux stuff done 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record_batch: slow5_rec_init() 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record_batch: self.write assignments... 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record_batch: self.write.raw_signal malloc... 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record_batch: self.write.raw_signal malloc done 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record_batch: self.write assignments done 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record_batch: self.write processing raw_signal 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record_batch: self.write raw_signal done 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record_batch: aux stuff... 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record_batch: checked_aux: channel_number: 281 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record_batch: slow5_aux_set_string running... 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record_batch: slow5_aux_set_string type: 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record_batch: slow5_aux_set_string running done: ret = 0 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record_batch: checked_aux: median_before: 231.363533 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record_batch: checked_aux: read_number: 4019 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record_batch: checked_aux: start_mux: 1 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record_batch: checked_aux: start_time: 78470500 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record_batch: aux stuff done 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record_batch: slow5_write_batch() 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record_batch: free() 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record_batch: free() aux 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record_batch: _record_type_validation running 171s 21-Feb-25 15:03:06 - [DEBUG]: _record_type_validation: doing aux stuff... 171s 21-Feb-25 15:03:06 - [DEBUG]: _record_type_validation: aux passed tests... 171s 21-Feb-25 15:03:06 - [DEBUG]: _record_type_validation: aux passed tests... 171s 21-Feb-25 15:03:06 - [DEBUG]: _record_type_validation: aux passed tests... 171s 21-Feb-25 15:03:06 - [DEBUG]: _record_type_validation: aux passed tests... 171s 21-Feb-25 15:03:06 - [DEBUG]: _record_type_validation: aux passed tests... 171s 21-Feb-25 15:03:06 - [DEBUG]: _record_type_validation: aux stuff done 171s 21-Feb-25 15:03:06 - [DEBUG]: _record_type_validation: doing aux stuff... 171s 21-Feb-25 15:03:06 - [DEBUG]: _record_type_validation: aux passed tests... 171s 21-Feb-25 15:03:06 - [DEBUG]: _record_type_validation: aux passed tests... 171s 21-Feb-25 15:03:06 - [DEBUG]: _record_type_validation: aux passed tests... 171s 21-Feb-25 15:03:06 - [DEBUG]: _record_type_validation: aux passed tests... 171s 21-Feb-25 15:03:06 - [DEBUG]: _record_type_validation: aux passed tests... 171s 21-Feb-25 15:03:06 - [DEBUG]: _record_type_validation: aux stuff done 171s 21-Feb-25 15:03:06 - [DEBUG]: _record_type_validation: doing aux stuff... 171s 21-Feb-25 15:03:06 - [DEBUG]: _record_type_validation: aux passed tests... 171s 21-Feb-25 15:03:06 - [DEBUG]: _record_type_validation: aux passed tests... 171s 21-Feb-25 15:03:06 - [DEBUG]: _record_type_validation: aux passed tests... 171s 21-Feb-25 15:03:06 - [DEBUG]: _record_type_validation: aux passed tests... 171s 21-Feb-25 15:03:06 - [DEBUG]: _record_type_validation: aux passed tests... 171s 21-Feb-25 15:03:06 - [DEBUG]: _record_type_validation: aux stuff done 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record_batch: _record_type_validation done 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record_batch: slow5_rec_init() 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record_batch: self.write assignments... 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record_batch: self.write.raw_signal malloc... 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record_batch: self.write.raw_signal malloc done 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record_batch: self.write assignments done 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record_batch: self.write processing raw_signal 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record_batch: self.write raw_signal done 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record_batch: aux stuff... 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record_batch: checked_aux: channel_number: 391 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record_batch: slow5_aux_set_string running... 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record_batch: slow5_aux_set_string type: 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record_batch: slow5_aux_set_string running done: ret = 0 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record_batch: checked_aux: median_before: 260.557264 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record_batch: checked_aux: read_number: 2287 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record_batch: checked_aux: start_mux: 2 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record_batch: checked_aux: start_time: 36886851 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record_batch: aux stuff done 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record_batch: slow5_rec_init() 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record_batch: self.write assignments... 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record_batch: self.write.raw_signal malloc... 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record_batch: self.write.raw_signal malloc done 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record_batch: self.write assignments done 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record_batch: self.write processing raw_signal 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record_batch: self.write raw_signal done 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record_batch: aux stuff... 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record_batch: checked_aux: channel_number: 281 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record_batch: slow5_aux_set_string running... 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record_batch: slow5_aux_set_string type: 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record_batch: slow5_aux_set_string running done: ret = 0 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record_batch: checked_aux: median_before: 231.363533 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record_batch: checked_aux: read_number: 4019 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record_batch: checked_aux: start_mux: 1 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record_batch: checked_aux: start_time: 78470500 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record_batch: aux stuff done 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record_batch: slow5_rec_init() 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record_batch: self.write assignments... 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record_batch: self.write.raw_signal malloc... 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record_batch: self.write.raw_signal malloc done 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record_batch: self.write assignments done 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record_batch: self.write processing raw_signal 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record_batch: self.write raw_signal done 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record_batch: aux stuff... 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record_batch: checked_aux: channel_number: 391 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record_batch: slow5_aux_set_string running... 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record_batch: slow5_aux_set_string type: 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record_batch: slow5_aux_set_string running done: ret = 0 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record_batch: checked_aux: median_before: 260.557264 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record_batch: checked_aux: read_number: 2287 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record_batch: checked_aux: start_mux: 2 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record_batch: checked_aux: start_time: 36886851 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record_batch: aux stuff done 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record_batch: slow5_write_batch() 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record_batch: free() 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record_batch: free() aux 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record_batch: _record_type_validation running 171s 21-Feb-25 15:03:06 - [DEBUG]: _record_type_validation: doing aux stuff... 171s 21-Feb-25 15:03:06 - [DEBUG]: _record_type_validation: aux passed tests... 171s 21-Feb-25 15:03:06 - [DEBUG]: _record_type_validation: aux passed tests... 171s 21-Feb-25 15:03:06 - [DEBUG]: _record_type_validation: aux passed tests... 171s 21-Feb-25 15:03:06 - [DEBUG]: _record_type_validation: aux passed tests... 171s 21-Feb-25 15:03:06 - [DEBUG]: _record_type_validation: aux passed tests... 171s 21-Feb-25 15:03:06 - [DEBUG]: _record_type_validation: aux stuff done 171s 21-Feb-25 15:03:06 - [DEBUG]: _record_type_validation: doing aux stuff... 171s 21-Feb-25 15:03:06 - [DEBUG]: _record_type_validation: aux passed tests... 171s 21-Feb-25 15:03:06 - [DEBUG]: _record_type_validation: aux passed tests... 171s 21-Feb-25 15:03:06 - [DEBUG]: _record_type_validation: aux passed tests... 171s 21-Feb-25 15:03:06 - [DEBUG]: _record_type_validation: aux passed tests... 171s 21-Feb-25 15:03:06 - [DEBUG]: _record_type_validation: aux passed tests... 171s 21-Feb-25 15:03:06 - [DEBUG]: _record_type_validation: aux stuff done 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record_batch: _record_type_validation done 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record_batch: slow5_rec_init() 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record_batch: self.write assignments... 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record_batch: self.write.raw_signal malloc... 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record_batch: self.write.raw_signal malloc done 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record_batch: self.write assignments done 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record_batch: self.write processing raw_signal 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record_batch: self.write raw_signal done 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record_batch: aux stuff... 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record_batch: checked_aux: channel_number: 281 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record_batch: slow5_aux_set_string running... 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record_batch: slow5_aux_set_string type: 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record_batch: slow5_aux_set_string running done: ret = 0 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record_batch: checked_aux: median_before: 231.363533 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record_batch: checked_aux: read_number: 4019 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record_batch: checked_aux: start_mux: 1 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record_batch: checked_aux: start_time: 78470500 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record_batch: aux stuff done 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record_batch: slow5_rec_init() 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record_batch: self.write assignments... 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record_batch: self.write.raw_signal malloc... 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record_batch: self.write.raw_signal malloc done 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record_batch: self.write assignments done 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record_batch: self.write processing raw_signal 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record_batch: self.write raw_signal done 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record_batch: aux stuff... 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record_batch: checked_aux: channel_number: 391 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record_batch: slow5_aux_set_string running... 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record_batch: slow5_aux_set_string type: 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record_batch: slow5_aux_set_string running done: ret = 0 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record_batch: checked_aux: median_before: 260.557264 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record_batch: checked_aux: read_number: 2287 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record_batch: checked_aux: start_mux: 2 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record_batch: checked_aux: start_time: 36886851 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record_batch: aux stuff done 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record_batch: slow5_write_batch() 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record_batch: free() 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record_batch: free() aux 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record_batch: function complete, returning 0 171s 21-Feb-25 15:03:06 - [DEBUG]: examples/example2.slow5 closed 171s 21-Feb-25 15:03:06 - [DEBUG]: examples/example_write_aux_multi.slow5 closed 171s 21-Feb-25 15:03:06 - [DEBUG]: FILE: examples/example2.slow5, mode: r 171s 21-Feb-25 15:03:06 - [DEBUG]: FILE: b'examples/example2.slow5', mode: b'r' 171s 171s ret: write_record(): 0 171s ret: write_record(): 0 171s ret: write_record(): 0 171s ret: write_record(): 0 171s ret: write_record(): 0 171s ret: write_record(): 0 171s ret: write_record(): 0 171s ret: write_record(): 0 171s ============================================== 171s write reads with aux 171s ret: write_header(): 0 171s ret: write_header(): 0 171s ret: write_record(): 0 171s ret: write_record(): 0 171s ret: write_record(): 0 171s ret: write_record(): 0 171s ret: write_record(): 0 171s ret: write_record(): 0 171s ret: write_record(): 0 171s ret: write_record(): 0 171s ============================================== 171s append reads with aux 171s ret: write_header(): 0 171s ret: write_header(): 0 171s ret: write_record(): 0 171s ret: write_record(): 0 171s ret: write_record(): 0 171s ret: write_record(): 0 171s ret: write_record(): 0 171s ret: write_record(): 0 171s ret: write_record(): 0 171s ret: write_record(): 0 171s ret: write_record(): 0 171s ret: write_record(): 0 171s ret: write_record(): 0 171s ret: write_record(): 0 171s ret: write_record(): 0 171s ret: write_record(): 0 171s ret: write_record(): 0 171s ret: write_record(): 0 171s ============================================== 171s seq_reads_multi with aux: 171s type check reads: 171s r0 171s read_number 4019 171s r1 171s read_number 2287 171s r2 171s read_number 4019 171s r3 171s read_number 2287 171s r4 171s read_number 4019 171s r5 171s read_number 2287 171s 0a238451-b9ed-446d-a152-badd074006c4 171s read_number 4019 171s 0d624d4b-671f-40b8-9798-84f2ccc4d7fc 171s read_number 2287 171s ============================================== 171s get_reads_multi with aux: 171s type check reads: 171s r0 171s read_number 4019 171s r1 171s read_number 2287 171s r2 171s read_number 4019 171s r3 171s read_number 2287 171s r4 171s read_number 4019 171s r5 171s read_number 2287 171s 0a238451-b9ed-446d-a152-badd074006c4 171s read_number 4019 171s 0d624d4b-671f-40b8-9798-84f2ccc4d7fc 171s read_number 2287 171s ============================================== 171s write reads with aux multi 171s ret: write_header(): 0 171s ret: write_header(): 0 171s {'r0': {'read_id': 'r0', 'read_group': 0, 'digitisation': 8192.0, 'offset': 2.0, 'range': 1444.86, 'sampling_rate': 4000.0, 'len_raw_signal': 76460, 'signal': array([1299, 771, 556, ..., 554, 560, 566], dtype=int16)}, 'r1': {'read_id': 'r1', 'read_group': 0, 'digitisation': 8192.0, 'offset': 6.0, 'range': 1444.86, 'sampling_rate': 4000.0, 'len_raw_signal': 38164, 'signal': array([1462, 1075, 795, ..., 696, 706, 702], dtype=int16)}, 'r2': {'read_id': 'r2', 'read_group': 1, 'digitisation': 8192.0, 'offset': 2.0, 'range': 1444.86, 'sampling_rate': 4000.0, 'len_raw_signal': 76460, 'signal': array([1299, 771, 556, ..., 554, 560, 566], dtype=int16)}, 'r3': {'read_id': 'r3', 'read_group': 1, 'digitisation': 8192.0, 'offset': 6.0, 'range': 1444.86, 'sampling_rate': 4000.0, 'len_raw_signal': 38164, 'signal': array([1462, 1075, 795, ..., 696, 706, 702], dtype=int16)}, 'r4': {'read_id': 'r4', 'read_group': 2, 'digitisation': 8192.0, 'offset': 2.0, 'range': 1444.86, 'sampling_rate': 4000.0, 'len_raw_signal': 76460, 'signal': array([1299, 771, 556, ..., 554, 560, 566], dtype=int16)}, 'r5': {'read_id': 'r5', 'read_group': 2, 'digitisation': 8192.0, 'offset': 6.0, 'range': 1444.86, 'sampling_rate': 4000.0, 'len_raw_signal': 38164, 'signal': array([1462, 1075, 795, ..., 696, 706, 702], dtype=int16)}, '0a238451-b9ed-446d-a152-badd074006c4': {'read_id': '0a238451-b9ed-446d-a152-badd074006c4', 'read_group': 3, 'digitisation': 8192.0, 'offset': 2.0, 'range': 1444.86, 'sampling_rate': 4000.0, 'len_raw_signal': 76460, 'signal': array([1299, 771, 556, ..., 554, 560, 566], dtype=int16)}, '0d624d4b-671f-40b8-9798-84f2ccc4d7fc': {'read_id': '0d624d4b-671f-40b8-9798-84f2ccc4d7fc', 'read_group': 3, 'digitisation': 8192.0, 'offset': 6.0, 'range': 1444.86, 'sampling_rate': 4000.0, 'len_raw_signal': 38164, 'signal': array([1462, 1075, 795, ..., 696, 706, 702], dtype=int16)}} 171s {'r0': {'channel_number': '281', 'median_before': 231.363533, 'read_number': 4019, 'start_mux': 1, 'start_time': 78470500}, 'r1': {'channel_number': '391', 'median_before': 260.557264, 'read_number': 2287, 'start_mux': 2, 'start_time': 36886851}, 'r2': {'channel_number': '281', 'median_before': 231.363533, 'read_number': 4019, 'start_mux': 1, 'start_time': 78470500}, 'r3': {'channel_number': '391', 'median_before': 260.557264, 'read_number': 2287, 'start_mux': 2, 'start_time': 36886851}, 'r4': {'channel_number': '281', 'median_before': 231.363533, 'read_number': 4019, 'start_mux': 1, 'start_time': 78470500}, 'r5': {'channel_number': '391', 'median_before': 260.557264, 'read_number': 2287, 'start_mux': 2, 'start_time': 36886851}, '0a238451-b9ed-446d-a152-badd074006c4': {'channel_number': '281', 'median_before': 231.363533, 'read_number': 4019, 'start_mux': 1, 'start_time': 78470500}, '0d624d4b-671f-40b8-9798-84f2ccc4d7fc': {'channel_number': '391', 'median_before': 260.557264, 'read_number': 2287, 'start_mux': 2, 'start_time': 36886851}} 171s ret: write_record(): 0 171s ============================================== 171s get all readIDs from index 171s ['r0', 'r1', 'r2', 'r3', 'r4', 'r5', '0a238451-b9ed-446d-a152-badd074006c4', '0d624d4b-671f-40b8-9798-84f2ccc4d7fc'] 171s number of reads: 8 171s ============================================== 171s done 171s 21-Feb-25 15:03:06 - [DEBUG]: Number of read_groups: 4 171s 21-Feb-25 15:03:06 - [DEBUG]: pathname: examples/example2.slow5 171s 21-Feb-25 15:03:06 - [DEBUG]: total_time_slow5_get_next: 0.020279407501220703 seconds 171s 21-Feb-25 15:03:06 - [DEBUG]: total_time_yield_reads: 0.02114081382751465 seconds 171s 21-Feb-25 15:03:06 - [DEBUG]: total_single_write_time: 0.0 seconds 171s 21-Feb-25 15:03:06 - [DEBUG]: total_multi_write_signal_time: 0.0 seconds 171s 21-Feb-25 15:03:06 - [DEBUG]: total_multi_write_time: 0.0 seconds 171s 21-Feb-25 15:03:06 - [DEBUG]: FILE: examples/example2.slow5, mode: r 171s 21-Feb-25 15:03:06 - [DEBUG]: Creating/loading index... 171s 21-Feb-25 15:03:06 - [DEBUG]: examples/example2.slow5 closed 171s 21-Feb-25 15:03:06 - [DEBUG]: pathname: examples/example.slow5 171s 21-Feb-25 15:03:06 - [DEBUG]: total_time_slow5_get_next: 0.016730070114135742 seconds 171s 21-Feb-25 15:03:06 - [DEBUG]: total_time_yield_reads: 0.01726222038269043 seconds 171s 21-Feb-25 15:03:06 - [DEBUG]: total_single_write_time: 0.0 seconds 171s 21-Feb-25 15:03:06 - [DEBUG]: total_multi_write_signal_time: 0.0 seconds 171s 21-Feb-25 15:03:06 - [DEBUG]: total_multi_write_time: 0.0 seconds 171s 21-Feb-25 15:03:06 - [DEBUG]: pathname: examples/example2.slow5 171s 21-Feb-25 15:03:06 - [DEBUG]: total_time_slow5_get_next: 0.022655010223388672 seconds 171s 21-Feb-25 15:03:06 - [DEBUG]: total_time_yield_reads: 0.025533676147460938 seconds 171s 21-Feb-25 15:03:06 - [DEBUG]: total_single_write_time: 0.0 seconds 171s 21-Feb-25 15:03:06 - [DEBUG]: total_multi_write_signal_time: 0.0 seconds 171s 21-Feb-25 15:03:06 - [DEBUG]: total_multi_write_time: 0.0 seconds 171s 21-Feb-25 15:03:06 - [DEBUG]: examples/example_write_aux_multi.slow5 already closed 171s 21-Feb-25 15:03:06 - [DEBUG]: pathname: examples/example_write_aux_multi.slow5 171s 21-Feb-25 15:03:06 - [DEBUG]: total_time_slow5_get_next: 0.0 seconds 171s 21-Feb-25 15:03:06 - [DEBUG]: total_time_yield_reads: 0.0 seconds 171s 21-Feb-25 15:03:06 - [DEBUG]: total_single_write_time: 0.0 seconds 171s 21-Feb-25 15:03:06 - [DEBUG]: total_multi_write_signal_time: 0.03774619102478027 seconds 171s 21-Feb-25 15:03:06 - [DEBUG]: total_multi_write_time: 0.07427287101745605 seconds 171s 21-Feb-25 15:03:06 - [DEBUG]: pathname: examples/example2.slow5 171s 21-Feb-25 15:03:06 - [DEBUG]: total_time_slow5_get_next: 0.0 seconds 171s 21-Feb-25 15:03:06 - [DEBUG]: total_time_yield_reads: 0.0 seconds 171s 21-Feb-25 15:03:06 - [DEBUG]: total_single_write_time: 0.0 seconds 171s 21-Feb-25 15:03:06 - [DEBUG]: total_multi_write_signal_time: 0.0 seconds 171s 21-Feb-25 15:03:06 - [DEBUG]: total_multi_write_time: 0.0 seconds 171s 21-Feb-25 15:03:06 - [DEBUG]: examples/example_write_append_aux.blow5 already closed 171s 21-Feb-25 15:03:06 - [DEBUG]: pathname: examples/example_write_append_aux.blow5 171s 21-Feb-25 15:03:06 - [DEBUG]: total_time_slow5_get_next: 0.0 seconds 171s 21-Feb-25 15:03:06 - [DEBUG]: total_time_yield_reads: 0.0 seconds 171s 21-Feb-25 15:03:06 - [DEBUG]: total_single_write_time: 0.03437542915344238 seconds 171s 21-Feb-25 15:03:06 - [DEBUG]: total_multi_write_signal_time: 0.0 seconds 171s 21-Feb-25 15:03:06 - [DEBUG]: total_multi_write_time: 0.0 seconds 171s 21-Feb-25 15:03:06 - [DEBUG]: pathname: examples/example2.slow5 171s 21-Feb-25 15:03:06 - [DEBUG]: total_time_slow5_get_next: 0.0 seconds 171s 21-Feb-25 15:03:06 - [DEBUG]: total_time_yield_reads: 0.0 seconds 171s 21-Feb-25 15:03:06 - [DEBUG]: total_single_write_time: 0.0 seconds 171s 21-Feb-25 15:03:06 - [DEBUG]: total_multi_write_signal_time: 0.0 seconds 171s 21-Feb-25 15:03:06 - [DEBUG]: total_multi_write_time: 0.0 seconds 171s Testing with python3.13 in /tmp/autopkgtest.64AgJ9/autopkgtest_tmp: 171s 21-Feb-25 15:03:06 - [DEBUG]: FILE: examples/example.slow5, mode: r 171s 21-Feb-25 15:03:06 - [DEBUG]: FILE: b'examples/example.slow5', mode: b'r' 171s 21-Feb-25 15:03:06 - [DEBUG]: Number of read_groups: 1 171s 21-Feb-25 15:03:06 - [DEBUG]: FILE: examples/example.slow5, mode: r 171s 21-Feb-25 15:03:06 - [DEBUG]: Creating/loading index... 171s 21-Feb-25 15:03:06 - [DEBUG]: get_aux_names starting 171s 21-Feb-25 15:03:06 - [DEBUG]: get_aux_names aux_len: 0 171s 21-Feb-25 15:03:06 - [WARNING]: get_aux_names ret is NULL 171s 21-Feb-25 15:03:06 - [DEBUG]: get_aux_types starting 171s 21-Feb-25 15:03:06 - [DEBUG]: get_aux_types aux_len: 0 171s 21-Feb-25 15:03:06 - [WARNING]: get_aux_types self.s5_aux_type is NULL 171s 21-Feb-25 15:03:06 - [WARNING]: get_read unknown aux name: blah 171s 21-Feb-25 15:03:06 - [WARNING]: get_read unknown aux name: read_number 171s 21-Feb-25 15:03:06 - [WARNING]: get_read unknown aux name: start_mux 171s 21-Feb-25 15:03:06 - [DEBUG]: slow5_get_next return: 0 171s 21-Feb-25 15:03:06 - [DEBUG]: slow5_get_next return: 0 171s 21-Feb-25 15:03:06 - [DEBUG]: slow5_get_next return: 0 171s 21-Feb-25 15:03:06 - [DEBUG]: slow5_get_next return: 0 171s 21-Feb-25 15:03:06 - [DEBUG]: slow5_get_next return: 0 171s 21-Feb-25 15:03:06 - [DEBUG]: slow5_get_next return: -1 171s 21-Feb-25 15:03:06 - [DEBUG]: slow5_get_next reached end of file (EOF)(-1): -1: ['SLOW5_ERR_EOF', 'End Of File reached'] 171s [slow5_idx_get::ERROR] Read ID 'null_read' was not found. At src/slow5_idx.c:441 171s 21-Feb-25 15:03:06 - [DEBUG]: get_read return not 0: -7 171s 21-Feb-25 15:03:06 - [DEBUG]: slow5_get_hdr_keys head_len: 32 171s 21-Feb-25 15:03:06 - [DEBUG]: slow5_get_hdr_keys head_len: 32 171s 21-Feb-25 15:03:06 - [DEBUG]: examples/example.slow5 closed 171s 21-Feb-25 15:03:06 - [DEBUG]: FILE: examples/example2.slow5, mode: r 171s 21-Feb-25 15:03:06 - [DEBUG]: FILE: b'examples/example2.slow5', mode: b'r' 171s 21-Feb-25 15:03:06 - [DEBUG]: Number of read_groups: 4 171s 21-Feb-25 15:03:06 - [DEBUG]: FILE: examples/example2.slow5, mode: r 171s 21-Feb-25 15:03:06 - [DEBUG]: Creating/loading index... 171s 21-Feb-25 15:03:06 - [DEBUG]: get_aux_names starting 171s 21-Feb-25 15:03:06 - [DEBUG]: get_aux_names aux_len: 5 171s 21-Feb-25 15:03:06 - [DEBUG]: get_aux_types starting 171s 21-Feb-25 15:03:06 - [DEBUG]: get_aux_types aux_len: 5 171s 21-Feb-25 15:03:06 - [WARNING]: get_read unknown aux name: blah 171s 21-Feb-25 15:03:06 - [WARNING]: get_read unknown aux name: blah 171s 21-Feb-25 15:03:06 - [DEBUG]: get_aux_names starting 171s 21-Feb-25 15:03:06 - [DEBUG]: get_aux_names aux_len: 5 171s 21-Feb-25 15:03:06 - [DEBUG]: get_aux_types starting 171s 21-Feb-25 15:03:06 - [DEBUG]: get_aux_types aux_len: 5 171s 21-Feb-25 15:03:06 - [DEBUG]: slow5_get_next return: 0 171s 21-Feb-25 15:03:06 - [DEBUG]: slow5_get_next return: 0 171s 21-Feb-25 15:03:06 - [DEBUG]: slow5_get_next return: 0 171s 21-Feb-25 15:03:06 - [DEBUG]: slow5_get_next return: 0 171s 21-Feb-25 15:03:06 - [DEBUG]: slow5_get_next return: 0 171s 21-Feb-25 15:03:06 - [DEBUG]: slow5_get_next return: 0 171s 21-Feb-25 15:03:06 - [DEBUG]: slow5_get_next return: 0 171s 21-Feb-25 15:03:06 - [DEBUG]: slow5_get_next return: 0 171s 21-Feb-25 15:03:06 - [DEBUG]: slow5_get_next return: -1 171s 21-Feb-25 15:03:06 - [DEBUG]: slow5_get_next reached end of file (EOF)(-1): -1: ['SLOW5_ERR_EOF', 'End Of File reached'] 171s 21-Feb-25 15:03:06 - [DEBUG]: examples/example2.slow5 closed 171s 21-Feb-25 15:03:06 - [DEBUG]: FILE: examples/example_write.slow5, mode: w 171s 21-Feb-25 15:03:06 - [DEBUG]: FILE: b'examples/example_write.slow5', mode: b'w' 171s 21-Feb-25 15:03:06 - [DEBUG]: Not writing blow5, skipping compression steps 171s 21-Feb-25 15:03:06 - [DEBUG]: FILE: examples/example2.slow5, mode: r 171s 21-Feb-25 15:03:06 - [DEBUG]: FILE: b'examples/example2.slow5', mode: b'r' 171s 21-Feb-25 15:03:06 - [DEBUG]: Number of read_groups: 4 171s 21-Feb-25 15:03:06 - [DEBUG]: slow5_get_next return: 0 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: _record_type_validation running 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: _record_type_validation done 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: checking header stuff... 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: writting header... 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: header written 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: slow5_rec_init() 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: self.write assignments... 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: self.write.raw_signal malloc... 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: self.write.raw_signal malloc done 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: self.write assignments done 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: self.write processing raw_signal 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: self.write raw_signal done 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: slow5_write() 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: slow5_write() ret: 305872 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: slow5_rec_free() 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: function complete, returning 0 171s 21-Feb-25 15:03:06 - [DEBUG]: slow5_get_next return: 0 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: _record_type_validation running 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: _record_type_validation done 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: slow5_rec_init() 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: self.write assignments... 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: self.write.raw_signal malloc... 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: self.write.raw_signal malloc done 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: self.write assignments done 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: self.write processing raw_signal 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: self.write raw_signal done 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: slow5_write() 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: slow5_write() ret: 152707 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: slow5_rec_free() 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: function complete, returning 0 171s 21-Feb-25 15:03:06 - [DEBUG]: slow5_get_next return: 0 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: _record_type_validation running 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: _record_type_validation done 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: slow5_rec_init() 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: self.write assignments... 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: self.write.raw_signal malloc... 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: self.write.raw_signal malloc done 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: self.write assignments done 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: self.write processing raw_signal 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: self.write raw_signal done 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: slow5_write() 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: slow5_write() ret: 305872 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: slow5_rec_free() 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: function complete, returning 0 171s 21-Feb-25 15:03:06 - [DEBUG]: slow5_get_next return: 0 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: _record_type_validation running 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: _record_type_validation done 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: slow5_rec_init() 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: self.write assignments... 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: self.write.raw_signal malloc... 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: self.write.raw_signal malloc done 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: self.write assignments done 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: self.write processing raw_signal 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: self.write raw_signal done 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: slow5_write() 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: slow5_write() ret: 152707 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: slow5_rec_free() 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: function complete, returning 0 171s 21-Feb-25 15:03:06 - [DEBUG]: slow5_get_next return: 0 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: _record_type_validation running 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: _record_type_validation done 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: slow5_rec_init() 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: self.write assignments... 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: self.write.raw_signal malloc... 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: self.write.raw_signal malloc done 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: self.write assignments done 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: self.write processing raw_signal 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: self.write raw_signal done 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: slow5_write() 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: slow5_write() ret: 305872 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: slow5_rec_free() 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: function complete, returning 0 171s 21-Feb-25 15:03:06 - [DEBUG]: slow5_get_next return: 0 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: _record_type_validation running 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: _record_type_validation done 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: slow5_rec_init() 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: self.write assignments... 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: self.write.raw_signal malloc... 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: self.write.raw_signal malloc done 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: self.write assignments done 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: self.write processing raw_signal 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: self.write raw_signal done 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: slow5_write() 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: slow5_write() ret: 152707 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: slow5_rec_free() 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: function complete, returning 0 171s 21-Feb-25 15:03:06 - [DEBUG]: slow5_get_next return: 0 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: _record_type_validation running 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: _record_type_validation done 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: slow5_rec_init() 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: self.write assignments... 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: self.write.raw_signal malloc... 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: self.write.raw_signal malloc done 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: self.write assignments done 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: self.write processing raw_signal 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: self.write raw_signal done 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: slow5_write() 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: slow5_write() ret: 305906 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: slow5_rec_free() 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: function complete, returning 0 171s 21-Feb-25 15:03:06 - [DEBUG]: slow5_get_next return: 0 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: _record_type_validation running 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: _record_type_validation done 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: slow5_rec_init() 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: self.write assignments... 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: self.write.raw_signal malloc... 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: self.write.raw_signal malloc done 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: self.write assignments done 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: self.write processing raw_signal 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: self.write raw_signal done 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: slow5_write() 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: slow5_write() ret: 152741 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: slow5_rec_free() 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: function complete, returning 0 171s 21-Feb-25 15:03:06 - [DEBUG]: slow5_get_next return: -1 171s 21-Feb-25 15:03:06 - [DEBUG]: slow5_get_next reached end of file (EOF)(-1): -1: ['SLOW5_ERR_EOF', 'End Of File reached'] 171s 21-Feb-25 15:03:06 - [DEBUG]: examples/example_write.slow5 closed 171s 21-Feb-25 15:03:06 - [DEBUG]: examples/example2.slow5 closed 171s 21-Feb-25 15:03:06 - [DEBUG]: FILE: examples/example_write_append.blow5, mode: w 171s 21-Feb-25 15:03:06 - [DEBUG]: FILE: b'examples/example_write_append.blow5', mode: b'w' 171s 21-Feb-25 15:03:06 - [DEBUG]: examples/example_write.slow5 already closed 171s 21-Feb-25 15:03:06 - [DEBUG]: pathname: examples/example_write.slow5 171s 21-Feb-25 15:03:06 - [DEBUG]: total_time_slow5_get_next: 0.0 seconds 171s 21-Feb-25 15:03:06 - [DEBUG]: total_time_yield_reads: 0.0 seconds 171s 21-Feb-25 15:03:06 - [DEBUG]: total_single_write_time: 0.02466893196105957 seconds 171s 21-Feb-25 15:03:06 - [DEBUG]: total_multi_write_signal_time: 0.0 seconds 171s 21-Feb-25 15:03:06 - [DEBUG]: total_multi_write_time: 0.0 seconds 171s 21-Feb-25 15:03:06 - [DEBUG]: FILE: examples/example2.slow5, mode: r 171s 21-Feb-25 15:03:06 - [DEBUG]: FILE: b'examples/example2.slow5', mode: b'r' 171s 21-Feb-25 15:03:06 - [DEBUG]: Number of read_groups: 4 171s 21-Feb-25 15:03:06 - [DEBUG]: pathname: examples/example2.slow5 171s 21-Feb-25 15:03:06 - [DEBUG]: total_time_slow5_get_next: 0.020010709762573242 seconds 171s 21-Feb-25 15:03:06 - [DEBUG]: total_time_yield_reads: 0.020525217056274414 seconds 171s 21-Feb-25 15:03:06 - [DEBUG]: total_single_write_time: 0.0 seconds 171s 21-Feb-25 15:03:06 - [DEBUG]: total_multi_write_signal_time: 0.0 seconds 171s 21-Feb-25 15:03:06 - [DEBUG]: total_multi_write_time: 0.0 seconds 171s 21-Feb-25 15:03:06 - [DEBUG]: slow5_get_next return: 0 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: _record_type_validation running 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: _record_type_validation done 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: checking header stuff... 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: writting header... 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: header written 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: slow5_rec_init() 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: self.write assignments... 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: self.write.raw_signal malloc... 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: self.write.raw_signal malloc done 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: self.write assignments done 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: self.write processing raw_signal 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: self.write raw_signal done 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: slow5_write() 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: slow5_write() ret: 152976 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: slow5_rec_free() 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: function complete, returning 0 171s 21-Feb-25 15:03:06 - [DEBUG]: slow5_get_next return: 0 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: _record_type_validation running 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: _record_type_validation done 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: slow5_rec_init() 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: self.write assignments... 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: self.write.raw_signal malloc... 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: self.write.raw_signal malloc done 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: self.write assignments done 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: self.write processing raw_signal 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: self.write raw_signal done 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: slow5_write() 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: slow5_write() ret: 76384 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: slow5_rec_free() 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: function complete, returning 0 171s 21-Feb-25 15:03:06 - [DEBUG]: slow5_get_next return: 0 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: _record_type_validation running 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: _record_type_validation done 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: slow5_rec_init() 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: self.write assignments... 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: self.write.raw_signal malloc... 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: self.write.raw_signal malloc done 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: self.write assignments done 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: self.write processing raw_signal 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: self.write raw_signal done 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: slow5_write() 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: slow5_write() ret: 152976 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: slow5_rec_free() 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: function complete, returning 0 171s 21-Feb-25 15:03:06 - [DEBUG]: slow5_get_next return: 0 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: _record_type_validation running 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: _record_type_validation done 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: slow5_rec_init() 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: self.write assignments... 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: self.write.raw_signal malloc... 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: self.write.raw_signal malloc done 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: self.write assignments done 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: self.write processing raw_signal 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: self.write raw_signal done 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: slow5_write() 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: slow5_write() ret: 76384 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: slow5_rec_free() 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: function complete, returning 0 171s 21-Feb-25 15:03:06 - [DEBUG]: slow5_get_next return: 0 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: _record_type_validation running 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: _record_type_validation done 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: slow5_rec_init() 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: self.write assignments... 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: self.write.raw_signal malloc... 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: self.write.raw_signal malloc done 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: self.write assignments done 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: self.write processing raw_signal 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: self.write raw_signal done 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: slow5_write() 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: slow5_write() ret: 152976 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: slow5_rec_free() 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: function complete, returning 0 171s 21-Feb-25 15:03:06 - [DEBUG]: slow5_get_next return: 0 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: _record_type_validation running 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: _record_type_validation done 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: slow5_rec_init() 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: self.write assignments... 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: self.write.raw_signal malloc... 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: self.write.raw_signal malloc done 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: self.write assignments done 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: self.write processing raw_signal 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: self.write raw_signal done 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: slow5_write() 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: slow5_write() ret: 76384 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: slow5_rec_free() 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: function complete, returning 0 171s 21-Feb-25 15:03:06 - [DEBUG]: slow5_get_next return: 0 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: _record_type_validation running 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: _record_type_validation done 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: slow5_rec_init() 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: self.write assignments... 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: self.write.raw_signal malloc... 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: self.write.raw_signal malloc done 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: self.write assignments done 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: self.write processing raw_signal 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: self.write raw_signal done 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: slow5_write() 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: slow5_write() ret: 153010 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: slow5_rec_free() 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: function complete, returning 0 171s 21-Feb-25 15:03:06 - [DEBUG]: slow5_get_next return: 0 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: _record_type_validation running 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: _record_type_validation done 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: slow5_rec_init() 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: self.write assignments... 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: self.write.raw_signal malloc... 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: self.write.raw_signal malloc done 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: self.write assignments done 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: self.write processing raw_signal 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: self.write raw_signal done 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: slow5_write() 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: slow5_write() ret: 76418 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: slow5_rec_free() 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: function complete, returning 0 171s 21-Feb-25 15:03:06 - [DEBUG]: slow5_get_next return: -1 171s 21-Feb-25 15:03:06 - [DEBUG]: slow5_get_next reached end of file (EOF)(-1): -1: ['SLOW5_ERR_EOF', 'End Of File reached'] 171s 21-Feb-25 15:03:06 - [DEBUG]: examples/example2.slow5 closed 171s 21-Feb-25 15:03:06 - [DEBUG]: examples/example_write_append.blow5 closed 171s 21-Feb-25 15:03:06 - [DEBUG]: FILE: examples/example_write_append.blow5, mode: a 171s 21-Feb-25 15:03:06 - [DEBUG]: FILE: b'examples/example_write_append.blow5', mode: b'a' 171s 21-Feb-25 15:03:06 - [DEBUG]: slow5_get_hdr_keys head_len: 38 171s |==============================================| 171s | pyslow5 test launch | 171s |==============================================| 171s ['__class__', '__delattr__', '__dir__', '__doc__', '__eq__', '__format__', '__ge__', '__getattribute__', '__getstate__', '__gt__', '__hash__', '__init__', '__init_subclass__', '__le__', '__lt__', '__ne__', '__new__', '__reduce__', '__reduce_ex__', '__repr__', '__setattr__', '__setstate__', '__sizeof__', '__str__', '__subclasshook__', '_aux_header_type_validation', '_convert_to_pA', '_get_batches', '_get_read', '_get_read_aux', '_get_read_multi', '_get_seq_read_aux', '_header_type_validation', '_multi_record_type_validation', '_record_type_validation', 'close', 'get_all_headers', 'get_aux_names', 'get_aux_types', 'get_empty_header', 'get_empty_record', 'get_header_names', 'get_header_value', 'get_read', 'get_read_ids', 'get_read_list', 'get_read_list_multi', 'seq_reads', 'seq_reads_multi', 'write_header', 'write_record', 'write_record_batch'] 171s slow5 file opened and object created in: 0.0003 seconds 171s ============================================== 171s get_read check, r1 171s get_read in: 0.0037 seconds 171s read_id: r1 171s read_group: 0 171s digitisation: 8192.0 171s offset: 23.0 171s range: 1467.61 171s sampling_rate: 4000.0 171s len_raw_signal: 59676 171s signal: [1039 588 588 593 586 574 570 585 588 586] 171s pylen of signal: 59676 171s AUX FIELDS: 171s read_number: None 171s start_mux: None 171s blah: None 171s ============================================== 171s get_read check, r4, converte to pA 171s get_read in: 0.0044 seconds 171s read_id: r4 171s read_group: 0 171s digitisation: 8192.0 171s offset: 23.0 171s range: 1467.61 171s sampling_rate: 4000.0 171s len_raw_signal: 59670 171s signal: [190.25902 108.92418 109.46163 109.10333 107.67012 108.38673 171s 108.745026 109.10333 111.074 108.38673 ] 171s pylen of signal: 59670 171s signal value type: 171s ============================================== 171s seq_reads check, all reads 171s seq_reads readIDs: 171s type check reads: 171s r1 171s r2 171s r3 171s r4 171s r5 171s seq_reads in: 0.0177 seconds 171s ============================================== 171s Yield check, selected reads 171s get_read_list in: 0.0 seconds 171s yielded readIDs: 171s r1 r1 171s r3 r3 171s null_read read not found, None returned 171s r5 r5 171s r2 r2 171s r1 r1 171s ============================================== 171s Get headder names 171s header names: 171s ['asic_id', 'asic_id_eeprom', 'asic_temp', 'auto_update', 'auto_update_source', 'bream_core_version', 'bream_is_standard', 'bream_map_version', 'bream_ont_version', 'bream_prod_version', 'bream_rnd_version', 'device_id', 'exp_script_name', 'exp_script_purpose', 'exp_start_time', 'experiment_kit', 'experiment_type', 'file_version', 'filename', 'flow_cell_id', 'heatsink_temp', 'hostname', 'installation_type', 'local_firmware_file', 'operating_system', 'protocol_run_id', 'protocols_version', 'run_id', 'sample_frequency', 'usb_config', 'user_filename_input', 'version'] 171s ============================================== 171s get_all_headers 171s {'asic_id': '3574887596', 'asic_id_eeprom': '0', 'asic_temp': '29.2145729', 'auto_update': '1', 'auto_update_source': 'https://mirror.oxfordnanoportal.com/software/MinKNOW/', 'bream_core_version': '1.1.20.1', 'bream_is_standard': '1', 'bream_map_version': '1.1.20.1', 'bream_ont_version': '1.1.20.1', 'bream_prod_version': '1.1.20.1', 'bream_rnd_version': '0.1.1', 'device_id': 'MN16450', 'exp_script_name': 'python/recipes/nc/NC_48Hr_Sequencing_Run_FLO-MIN106_SQK-LSK108.py', 'exp_script_purpose': 'sequencing_run', 'exp_start_time': '1479433093', 'experiment_kit': 'genomic_dna', 'experiment_type': 'customer_qc', 'file_version': '1', 'filename': 'deamernanopore_20161117_fnfab43577_mn16450_sequencing_run_ma_821_r9_4_na12878_11_17_16_88738', 'flow_cell_id': 'FAB43577', 'heatsink_temp': '33.9921875', 'hostname': 'DEAMERNANOPORE', 'installation_type': 'map', 'local_firmware_file': '0', 'operating_system': 'Windows 6.2', 'protocol_run_id': 'a4429838-103c-497f-a824-7dffa72cfd81', 'protocols_version': '1.1.20', 'run_id': 'd6e473a6d513ec6bfc150c60fd4556d72f0e6d18', 'sample_frequency': '4000', 'usb_config': '1.0.11_ONT#MinION_fpga_1.0.1#ctrl#Auto', 'user_filename_input': 'ma_821_r9.4_na12878_11_17_16', 'version': '1.1.20'} 171s ============================================== 171s Get headder attributes 171s flow_cell_id: FAB43577 171s exp_start_time: 1479433093 171s heatsink_temp: 33.9921875 171s asic_id: 3574887596 171s asic_id_eeprom: 0 171s asic_temp: 29.2145729 171s auto_update: 1 171s auto_update_source: https://mirror.oxfordnanoportal.com/software/MinKNOW/ 171s bream_core_version: 1.1.20.1 171s bream_is_standard: 1 171s bream_map_version: 1.1.20.1 171s bream_ont_version: 1.1.20.1 171s bream_prod_version: 1.1.20.1 171s bream_rnd_version: 0.1.1 171s device_id: MN16450 171s exp_script_name: python/recipes/nc/NC_48Hr_Sequencing_Run_FLO-MIN106_SQK-LSK108.py 171s exp_script_purpose: sequencing_run 171s exp_start_time: 1479433093 171s experiment_kit: genomic_dna 171s experiment_type: customer_qc 171s file_version: 1 171s filename: deamernanopore_20161117_fnfab43577_mn16450_sequencing_run_ma_821_r9_4_na12878_11_17_16_88738 171s flow_cell_id: FAB43577 171s heatsink_temp: 33.9921875 171s hostname: DEAMERNANOPORE 171s installation_type: map 171s local_firmware_file: 0 171s operating_system: Windows 6.2 171s protocol_run_id: a4429838-103c-497f-a824-7dffa72cfd81 171s protocols_version: 1.1.20 171s run_id: d6e473a6d513ec6bfc150c60fd4556d72f0e6d18 171s sample_frequency: 4000 171s usb_config: 1.0.11_ONT#MinION_fpga_1.0.1#ctrl#Auto 171s user_filename_input: ma_821_r9.4_na12878_11_17_16 171s version: 1.1.20 171s ============================================== 171s get_read check, 0d624d4b-671f-40b8-9798-84f2ccc4d7fc 171s read_id: 0d624d4b-671f-40b8-9798-84f2ccc4d7fc 171s read_group: 3 171s digitisation: 8192.0 171s offset: 6.0 171s range: 1444.86 171s sampling_rate: 4000.0 171s len_raw_signal: 38164 171s signal: [1462 1075 795 801 797 788 817 791 801 802] 171s pylen of signal: 38164 171s AUX FIELDS: 171s read_number: 2287 171s start_mux: 2 171s blah: None 171s AUX FIELDS: 171s blah: None 171s AUX FIELDS: 171s read_number: 2287 171s ============================================== 171s Get aux names 171s aux names: 171s ['channel_number', 'median_before', 'read_number', 'start_mux', 'start_time'] 171s ============================================== 171s Get aux types 171s aux types: 171s [22, 9, 2, 4, 7] 171s ============================================== 171s AUX FIELDS: 171s channel_number: 391 171s median_before: 260.557264 171s read_number: 2287 171s start_mux: 2 171s start_time: 36886851 171s ============================================== 171s seq_reads with aux: 171s type check reads: 171s r0 171s read_number 4019 171s r1 171s read_number 2287 171s r2 171s read_number 4019 171s r3 171s read_number 2287 171s r4 171s read_number 4019 171s r5 171s read_number 2287 171s 0a238451-b9ed-446d-a152-badd074006c4 171s read_number 4019 171s 0d624d4b-671f-40b8-9798-84f2ccc4d7fc 171s read_number 2287 171s ============================================== 171s write reads no aux 171s ret: write_header(): 0 171s ret: write_record(): 0 171s ret: write_record(): 0 171s ret: write_record(): 0 171s ret: write_record(): 0 171s ret: write_record(): 0 171s ret: write_record(): 0 171s ret: write_record(): 0 171s ret: write_record(): 0 171s ============================================== 171s append reads no aux 171s ret: write_header(): 0 171s ret: write_record(): 0 171s ret: write_record(): 0 171s ret: write_record(): 0 171s ret: write_record(): 0 171s ret: write_record(): 0 171s ret: write_record(): 0 171s ret: write_record(): 0 171s ret: write_record(): 0 171s get_all_headers 171s {'asic_id': 'test_0', 'asic_id_eeprom': 'test_1', 'asic_temp': 'test_2', 'asic_version': 'test_3', 'auto_update': 'test_4', 'auto_update_source': 'test_5', 'barcoding_enabled': 'test_6', 'bream_is_standard': 'test_7', 'configuration_version': 'test_8', 'device_id': 'test_9', 'device_type': 'test_10', 'distribution_status': 'test_11', 'distribution_version': 'test_12', 'exp_script_name': 'test_13', 'exp_script_purpose': 'test_14', 'exp_start_time': 'test_15', 'experiment_duration_set': 'test_16', 'flow_cell_id': 'test_17', 'flow_cell_product_code': 'test_18', 'guppy_version': 'test_19', 'heatsink_temp': 'test_20', 'hostname': 'test_21', 'hublett_board_id': 'test_36', 'installation_type': 'test_22', 'local_basecalling': 'test_23', 'operating_system': 'test_24', 'package': 'test_25', 'protocol_group_id': 'test_26', 'protocol_run_id': 'test_27', 'protocol_start_time': 'test_28', 'protocols_version': 'test_29', 'run_id': 'test_30', 'sample_frequency': 'test_31', 'sample_id': 'test_32', 'satellite_firmware_version': 'test_37', 'sequencing_kit': 'test_33', 'usb_config': 'test_34', 'version': 'test_35'}21-Feb-25 15:03:06 - [DEBUG]: FILE: examples/example2.slow5, mode: r 171s 21-Feb-25 15:03:06 - [DEBUG]: FILE: b'examples/example2.slow5', mode: b'r' 171s 21-Feb-25 15:03:06 - [DEBUG]: Number of read_groups: 4 171s 21-Feb-25 15:03:06 - [DEBUG]: pathname: examples/example2.slow5 171s 21-Feb-25 15:03:06 - [DEBUG]: total_time_slow5_get_next: 0.02011704444885254 seconds 171s 21-Feb-25 15:03:06 - [DEBUG]: total_time_yield_reads: 0.02061152458190918 seconds 171s 21-Feb-25 15:03:06 - [DEBUG]: total_single_write_time: 0.0 seconds 171s 21-Feb-25 15:03:06 - [DEBUG]: total_multi_write_signal_time: 0.0 seconds 171s 21-Feb-25 15:03:06 - [DEBUG]: total_multi_write_time: 0.0 seconds 171s 21-Feb-25 15:03:06 - [DEBUG]: slow5_get_next return: 0 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: _record_type_validation running 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: _record_type_validation done 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: slow5_rec_init() 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: self.write assignments... 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: self.write.raw_signal malloc... 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: self.write.raw_signal malloc done 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: self.write assignments done 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: self.write processing raw_signal 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: self.write raw_signal done 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: slow5_write() 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: slow5_write() ret: 152983 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: slow5_rec_free() 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: function complete, returning 0 171s 21-Feb-25 15:03:06 - [DEBUG]: slow5_get_next return: 0 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: _record_type_validation running 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: _record_type_validation done 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: slow5_rec_init() 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: self.write assignments... 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: self.write.raw_signal malloc... 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: self.write.raw_signal malloc done 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: self.write assignments done 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: self.write processing raw_signal 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: self.write raw_signal done 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: slow5_write() 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: slow5_write() ret: 76391 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: slow5_rec_free() 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: function complete, returning 0 171s 21-Feb-25 15:03:06 - [DEBUG]: slow5_get_next return: 0 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: _record_type_validation running 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: _record_type_validation done 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: slow5_rec_init() 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: self.write assignments... 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: self.write.raw_signal malloc... 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: self.write.raw_signal malloc done 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: self.write assignments done 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: self.write processing raw_signal 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: self.write raw_signal done 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: slow5_write() 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: slow5_write() ret: 152983 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: slow5_rec_free() 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: function complete, returning 0 171s 21-Feb-25 15:03:06 - [DEBUG]: slow5_get_next return: 0 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: _record_type_validation running 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: _record_type_validation done 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: slow5_rec_init() 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: self.write assignments... 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: self.write.raw_signal malloc... 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: self.write.raw_signal malloc done 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: self.write assignments done 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: self.write processing raw_signal 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: self.write raw_signal done 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: slow5_write() 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: slow5_write() ret: 76391 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: slow5_rec_free() 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: function complete, returning 0 171s 21-Feb-25 15:03:06 - [DEBUG]: slow5_get_next return: 0 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: _record_type_validation running 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: _record_type_validation done 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: slow5_rec_init() 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: self.write assignments... 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: self.write.raw_signal malloc... 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: self.write.raw_signal malloc done 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: self.write assignments done 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: self.write processing raw_signal 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: self.write raw_signal done 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: slow5_write() 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: slow5_write() ret: 152983 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: slow5_rec_free() 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: function complete, returning 0 171s 21-Feb-25 15:03:06 - [DEBUG]: slow5_get_next return: 0 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: _record_type_validation running 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: _record_type_validation done 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: slow5_rec_init() 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: self.write assignments... 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: self.write.raw_signal malloc... 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: self.write.raw_signal malloc done 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: self.write assignments done 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: self.write processing raw_signal 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: self.write raw_signal done 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: slow5_write() 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: slow5_write() ret: 76391 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: slow5_rec_free() 171s 21-Feb-25 15:03:06 - [DEBUG]: write_record: function complete, returning 0 172s 21-Feb-25 15:03:06 - [DEBUG]: slow5_get_next return: 0 172s 21-Feb-25 15:03:06 - [DEBUG]: write_record: _record_type_validation running 172s 21-Feb-25 15:03:06 - [DEBUG]: write_record: _record_type_validation done 172s 21-Feb-25 15:03:06 - [DEBUG]: write_record: slow5_rec_init() 172s 21-Feb-25 15:03:06 - [DEBUG]: write_record: self.write assignments... 172s 21-Feb-25 15:03:06 - [DEBUG]: write_record: self.write.raw_signal malloc... 172s 21-Feb-25 15:03:06 - [DEBUG]: write_record: self.write.raw_signal malloc done 172s 21-Feb-25 15:03:06 - [DEBUG]: write_record: self.write assignments done 172s 21-Feb-25 15:03:06 - [DEBUG]: write_record: self.write processing raw_signal 172s 21-Feb-25 15:03:06 - [DEBUG]: write_record: self.write raw_signal done 172s 21-Feb-25 15:03:06 - [DEBUG]: write_record: slow5_write() 172s 21-Feb-25 15:03:06 - [DEBUG]: write_record: slow5_write() ret: 153017 172s 21-Feb-25 15:03:06 - [DEBUG]: write_record: slow5_rec_free() 172s 21-Feb-25 15:03:06 - [DEBUG]: write_record: function complete, returning 0 172s 21-Feb-25 15:03:06 - [DEBUG]: slow5_get_next return: 0 172s 21-Feb-25 15:03:06 - [DEBUG]: write_record: _record_type_validation running 172s 21-Feb-25 15:03:06 - [DEBUG]: write_record: _record_type_validation done 172s 21-Feb-25 15:03:06 - [DEBUG]: write_record: slow5_rec_init() 172s 21-Feb-25 15:03:06 - [DEBUG]: write_record: self.write assignments... 172s 21-Feb-25 15:03:06 - [DEBUG]: write_record: self.write.raw_signal malloc... 172s 21-Feb-25 15:03:06 - [DEBUG]: write_record: self.write.raw_signal malloc done 172s 21-Feb-25 15:03:06 - [DEBUG]: write_record: self.write assignments done 172s 21-Feb-25 15:03:06 - [DEBUG]: write_record: self.write processing raw_signal 172s 21-Feb-25 15:03:06 - [DEBUG]: write_record: self.write raw_signal done 172s 21-Feb-25 15:03:06 - [DEBUG]: write_record: slow5_write() 172s 21-Feb-25 15:03:06 - [DEBUG]: write_record: slow5_write() ret: 76425 172s 21-Feb-25 15:03:06 - [DEBUG]: write_record: slow5_rec_free() 172s 21-Feb-25 15:03:06 - [DEBUG]: write_record: function complete, returning 0 172s 21-Feb-25 15:03:06 - [DEBUG]: slow5_get_next return: -1 172s 21-Feb-25 15:03:06 - [DEBUG]: slow5_get_next reached end of file (EOF)(-1): -1: ['SLOW5_ERR_EOF', 'End Of File reached'] 172s 21-Feb-25 15:03:06 - [DEBUG]: examples/example2.slow5 closed 172s 21-Feb-25 15:03:06 - [DEBUG]: examples/example_write_append.blow5 closed 172s 21-Feb-25 15:03:06 - [DEBUG]: FILE: examples/example_write_aux.blow5, mode: w 172s 21-Feb-25 15:03:06 - [DEBUG]: FILE: b'examples/example_write_aux.blow5', mode: b'w' 172s 21-Feb-25 15:03:06 - [DEBUG]: examples/example_write_append.blow5 already closed 172s 21-Feb-25 15:03:06 - [DEBUG]: pathname: examples/example_write_append.blow5 172s 21-Feb-25 15:03:06 - [DEBUG]: total_time_slow5_get_next: 0.0 seconds 172s 21-Feb-25 15:03:06 - [DEBUG]: total_time_yield_reads: 0.0 seconds 172s 21-Feb-25 15:03:06 - [DEBUG]: total_single_write_time: 0.024948835372924805 seconds 172s 21-Feb-25 15:03:06 - [DEBUG]: total_multi_write_signal_time: 0.0 seconds 172s 21-Feb-25 15:03:06 - [DEBUG]: total_multi_write_time: 0.0 seconds 172s 21-Feb-25 15:03:06 - [DEBUG]: FILE: examples/example2.slow5, mode: r 172s 21-Feb-25 15:03:06 - [DEBUG]: FILE: b'examples/example2.slow5', mode: b'r' 172s 21-Feb-25 15:03:06 - [DEBUG]: Number of read_groups: 4 172s 21-Feb-25 15:03:06 - [DEBUG]: pathname: examples/example2.slow5 172s 21-Feb-25 15:03:06 - [DEBUG]: total_time_slow5_get_next: 0.02526998519897461 seconds 172s 21-Feb-25 15:03:06 - [DEBUG]: total_time_yield_reads: 0.025832414627075195 seconds 172s 21-Feb-25 15:03:06 - [DEBUG]: total_single_write_time: 0.0 seconds 172s 21-Feb-25 15:03:06 - [DEBUG]: total_multi_write_signal_time: 0.0 seconds 172s 21-Feb-25 15:03:06 - [DEBUG]: total_multi_write_time: 0.0 seconds 172s 21-Feb-25 15:03:06 - [DEBUG]: slow5_get_next return: 0 172s 21-Feb-25 15:03:06 - [DEBUG]: get_aux_names starting 172s 21-Feb-25 15:03:06 - [DEBUG]: get_aux_names aux_len: 5 172s 21-Feb-25 15:03:06 - [DEBUG]: get_aux_types starting 172s 21-Feb-25 15:03:06 - [DEBUG]: get_aux_types aux_len: 5 172s 21-Feb-25 15:03:06 - [DEBUG]: write_record: _record_type_validation running 172s 21-Feb-25 15:03:06 - [DEBUG]: _record_type_validation: doing aux stuff... 172s 21-Feb-25 15:03:06 - [DEBUG]: _record_type_validation: aux passed tests... 172s 21-Feb-25 15:03:06 - [DEBUG]: _record_type_validation: aux passed tests... 172s 21-Feb-25 15:03:06 - [DEBUG]: _record_type_validation: aux passed tests... 172s 21-Feb-25 15:03:06 - [DEBUG]: _record_type_validation: aux passed tests... 172s 21-Feb-25 15:03:06 - [DEBUG]: _record_type_validation: aux passed tests... 172s 21-Feb-25 15:03:06 - [DEBUG]: _record_type_validation: doing aux stuff... 172s 21-Feb-25 15:03:06 - [DEBUG]: write_record: _record_type_validation done 172s 21-Feb-25 15:03:06 - [DEBUG]: write_record: checking header stuff... 172s 21-Feb-25 15:03:06 - [DEBUG]: write_record: writting header... 172s 21-Feb-25 15:03:06 - [DEBUG]: write_record: header written 172s 21-Feb-25 15:03:06 - [DEBUG]: write_record: slow5_rec_init() 172s 21-Feb-25 15:03:06 - [DEBUG]: write_record: self.write assignments... 172s 21-Feb-25 15:03:06 - [DEBUG]: write_record: self.write.raw_signal malloc... 172s 21-Feb-25 15:03:06 - [DEBUG]: write_record: self.write.raw_signal malloc done 172s 21-Feb-25 15:03:06 - [DEBUG]: write_record: self.write assignments done 172s 21-Feb-25 15:03:06 - [DEBUG]: write_record: self.write processing raw_signal 172s 21-Feb-25 15:03:06 - [DEBUG]: write_record: self.write raw_signal done 172s 21-Feb-25 15:03:06 - [DEBUG]: write_record: aux stuff... 172s 21-Feb-25 15:03:06 - [DEBUG]: write_record: checked_aux: channel_number: 281 172s 21-Feb-25 15:03:06 - [DEBUG]: write_record: slow5_aux_set_string running... 172s 21-Feb-25 15:03:06 - [DEBUG]: write_record: slow5_aux_set_string type: 172s 21-Feb-25 15:03:06 - [DEBUG]: write_record: slow5_aux_set_string running done: ret = 0 172s 21-Feb-25 15:03:06 - [DEBUG]: write_record: checked_aux: median_before: 231.363533 172s 21-Feb-25 15:03:06 - [DEBUG]: write_record: checked_aux: read_number: 4019 172s 21-Feb-25 15:03:06 - [DEBUG]: write_record: checked_aux: start_mux: 1 172s 21-Feb-25 15:03:06 - [DEBUG]: write_record: checked_aux: start_time: 78470500 172s 21-Feb-25 15:03:06 - [DEBUG]: write_record: aux stuff done 172s 21-Feb-25 15:03:06 - [DEBUG]: write_record: slow5_write() 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record: slow5_write() ret: 67258 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record: slow5_rec_free() 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record: function complete, returning 0 172s 21-Feb-25 15:03:07 - [DEBUG]: slow5_get_next return: 0 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record: _record_type_validation running 172s 21-Feb-25 15:03:07 - [DEBUG]: _record_type_validation: doing aux stuff... 172s 21-Feb-25 15:03:07 - [DEBUG]: _record_type_validation: aux passed tests... 172s 21-Feb-25 15:03:07 - [DEBUG]: _record_type_validation: aux passed tests... 172s 21-Feb-25 15:03:07 - [DEBUG]: _record_type_validation: aux passed tests... 172s 21-Feb-25 15:03:07 - [DEBUG]: _record_type_validation: aux passed tests... 172s 21-Feb-25 15:03:07 - [DEBUG]: _record_type_validation: aux passed tests... 172s 21-Feb-25 15:03:07 - [DEBUG]: _record_type_validation: doing aux stuff... 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record: _record_type_validation done 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record: slow5_rec_init() 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record: self.write assignments... 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record: self.write.raw_signal malloc... 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record: self.write.raw_signal malloc done 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record: self.write assignments done 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record: self.write processing raw_signal 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record: self.write raw_signal done 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record: aux stuff... 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record: checked_aux: channel_number: 391 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record: slow5_aux_set_string running... 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record: slow5_aux_set_string type: 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record: slow5_aux_set_string running done: ret = 0 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record: checked_aux: median_before: 260.557264 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record: checked_aux: read_number: 2287 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record: checked_aux: start_mux: 2 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record: checked_aux: start_time: 36886851 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record: aux stuff done 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record: slow5_write() 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record: slow5_write() ret: 32408 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record: slow5_rec_free() 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record: function complete, returning 0 172s 21-Feb-25 15:03:07 - [DEBUG]: slow5_get_next return: 0 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record: _record_type_validation running 172s 21-Feb-25 15:03:07 - [DEBUG]: _record_type_validation: doing aux stuff... 172s 21-Feb-25 15:03:07 - [DEBUG]: _record_type_validation: aux passed tests... 172s 21-Feb-25 15:03:07 - [DEBUG]: _record_type_validation: aux passed tests... 172s 21-Feb-25 15:03:07 - [DEBUG]: _record_type_validation: aux passed tests... 172s 21-Feb-25 15:03:07 - [DEBUG]: _record_type_validation: aux passed tests... 172s 21-Feb-25 15:03:07 - [DEBUG]: _record_type_validation: aux passed tests... 172s 21-Feb-25 15:03:07 - [DEBUG]: _record_type_validation: doing aux stuff... 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record: _record_type_validation done 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record: slow5_rec_init() 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record: self.write assignments... 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record: self.write.raw_signal malloc... 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record: self.write.raw_signal malloc done 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record: self.write assignments done 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record: self.write processing raw_signal 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record: self.write raw_signal done 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record: aux stuff... 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record: checked_aux: channel_number: 281 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record: slow5_aux_set_string running... 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record: slow5_aux_set_string type: 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record: slow5_aux_set_string running done: ret = 0 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record: checked_aux: median_before: 231.363533 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record: checked_aux: read_number: 4019 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record: checked_aux: start_mux: 1 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record: checked_aux: start_time: 78470500 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record: aux stuff done 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record: slow5_write() 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record: slow5_write() ret: 67258 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record: slow5_rec_free() 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record: function complete, returning 0 172s 21-Feb-25 15:03:07 - [DEBUG]: slow5_get_next return: 0 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record: _record_type_validation running 172s 21-Feb-25 15:03:07 - [DEBUG]: _record_type_validation: doing aux stuff... 172s 21-Feb-25 15:03:07 - [DEBUG]: _record_type_validation: aux passed tests... 172s 21-Feb-25 15:03:07 - [DEBUG]: _record_type_validation: aux passed tests... 172s 21-Feb-25 15:03:07 - [DEBUG]: _record_type_validation: aux passed tests... 172s 21-Feb-25 15:03:07 - [DEBUG]: _record_type_validation: aux passed tests... 172s 21-Feb-25 15:03:07 - [DEBUG]: _record_type_validation: aux passed tests... 172s 21-Feb-25 15:03:07 - [DEBUG]: _record_type_validation: doing aux stuff... 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record: _record_type_validation done 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record: slow5_rec_init() 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record: self.write assignments... 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record: self.write.raw_signal malloc... 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record: self.write.raw_signal malloc done 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record: self.write assignments done 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record: self.write processing raw_signal 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record: self.write raw_signal done 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record: aux stuff... 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record: checked_aux: channel_number: 391 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record: slow5_aux_set_string running... 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record: slow5_aux_set_string type: 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record: slow5_aux_set_string running done: ret = 0 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record: checked_aux: median_before: 260.557264 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record: checked_aux: read_number: 2287 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record: checked_aux: start_mux: 2 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record: checked_aux: start_time: 36886851 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record: aux stuff done 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record: slow5_write() 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record: slow5_write() ret: 32408 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record: slow5_rec_free() 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record: function complete, returning 0 172s 21-Feb-25 15:03:07 - [DEBUG]: slow5_get_next return: 0 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record: _record_type_validation running 172s 21-Feb-25 15:03:07 - [DEBUG]: _record_type_validation: doing aux stuff... 172s 21-Feb-25 15:03:07 - [DEBUG]: _record_type_validation: aux passed tests... 172s 21-Feb-25 15:03:07 - [DEBUG]: _record_type_validation: aux passed tests... 172s 21-Feb-25 15:03:07 - [DEBUG]: _record_type_validation: aux passed tests... 172s 21-Feb-25 15:03:07 - [DEBUG]: _record_type_validation: aux passed tests... 172s 21-Feb-25 15:03:07 - [DEBUG]: _record_type_validation: aux passed tests... 172s 21-Feb-25 15:03:07 - [DEBUG]: _record_type_validation: doing aux stuff... 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record: _record_type_validation done 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record: slow5_rec_init() 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record: self.write assignments... 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record: self.write.raw_signal malloc... 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record: self.write.raw_signal malloc done 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record: self.write assignments done 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record: self.write processing raw_signal 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record: self.write raw_signal done 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record: aux stuff... 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record: checked_aux: channel_number: 281 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record: slow5_aux_set_string running... 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record: slow5_aux_set_string type: 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record: slow5_aux_set_string running done: ret = 0 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record: checked_aux: median_before: 231.363533 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record: checked_aux: read_number: 4019 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record: checked_aux: start_mux: 1 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record: checked_aux: start_time: 78470500 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record: aux stuff done 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record: slow5_write() 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record: slow5_write() ret: 67260 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record: slow5_rec_free() 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record: function complete, returning 0 172s 21-Feb-25 15:03:07 - [DEBUG]: slow5_get_next return: 0 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record: _record_type_validation running 172s 21-Feb-25 15:03:07 - [DEBUG]: _record_type_validation: doing aux stuff... 172s 21-Feb-25 15:03:07 - [DEBUG]: _record_type_validation: aux passed tests... 172s 21-Feb-25 15:03:07 - [DEBUG]: _record_type_validation: aux passed tests... 172s 21-Feb-25 15:03:07 - [DEBUG]: _record_type_validation: aux passed tests... 172s 21-Feb-25 15:03:07 - [DEBUG]: _record_type_validation: aux passed tests... 172s 21-Feb-25 15:03:07 - [DEBUG]: _record_type_validation: aux passed tests... 172s 21-Feb-25 15:03:07 - [DEBUG]: _record_type_validation: doing aux stuff... 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record: _record_type_validation done 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record: slow5_rec_init() 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record: self.write assignments... 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record: self.write.raw_signal malloc... 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record: self.write.raw_signal malloc done 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record: self.write assignments done 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record: self.write processing raw_signal 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record: self.write raw_signal done 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record: aux stuff... 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record: checked_aux: channel_number: 391 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record: slow5_aux_set_string running... 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record: slow5_aux_set_string type: 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record: slow5_aux_set_string running done: ret = 0 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record: checked_aux: median_before: 260.557264 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record: checked_aux: read_number: 2287 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record: checked_aux: start_mux: 2 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record: checked_aux: start_time: 36886851 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record: aux stuff done 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record: slow5_write() 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record: slow5_write() ret: 32408 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record: slow5_rec_free() 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record: function complete, returning 0 172s 21-Feb-25 15:03:07 - [DEBUG]: slow5_get_next return: 0 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record: _record_type_validation running 172s 21-Feb-25 15:03:07 - [DEBUG]: _record_type_validation: doing aux stuff... 172s 21-Feb-25 15:03:07 - [DEBUG]: _record_type_validation: aux passed tests... 172s 21-Feb-25 15:03:07 - [DEBUG]: _record_type_validation: aux passed tests... 172s 21-Feb-25 15:03:07 - [DEBUG]: _record_type_validation: aux passed tests... 172s 21-Feb-25 15:03:07 - [DEBUG]: _record_type_validation: aux passed tests... 172s 21-Feb-25 15:03:07 - [DEBUG]: _record_type_validation: aux passed tests... 172s 21-Feb-25 15:03:07 - [DEBUG]: _record_type_validation: doing aux stuff... 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record: _record_type_validation done 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record: slow5_rec_init() 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record: self.write assignments... 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record: self.write.raw_signal malloc... 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record: self.write.raw_signal malloc done 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record: self.write assignments done 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record: self.write processing raw_signal 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record: self.write raw_signal done 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record: aux stuff... 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record: checked_aux: channel_number: 281 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record: slow5_aux_set_string running... 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record: slow5_aux_set_string type: 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record: slow5_aux_set_string running done: ret = 0 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record: checked_aux: median_before: 231.363533 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record: checked_aux: read_number: 4019 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record: checked_aux: start_mux: 1 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record: checked_aux: start_time: 78470500 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record: aux stuff done 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record: slow5_write() 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record: slow5_write() ret: 67298 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record: slow5_rec_free() 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record: function complete, returning 0 172s 21-Feb-25 15:03:07 - [DEBUG]: slow5_get_next return: 0 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record: _record_type_validation running 172s 21-Feb-25 15:03:07 - [DEBUG]: _record_type_validation: doing aux stuff... 172s 21-Feb-25 15:03:07 - [DEBUG]: _record_type_validation: aux passed tests... 172s 21-Feb-25 15:03:07 - [DEBUG]: _record_type_validation: aux passed tests... 172s 21-Feb-25 15:03:07 - [DEBUG]: _record_type_validation: aux passed tests... 172s 21-Feb-25 15:03:07 - [DEBUG]: _record_type_validation: aux passed tests... 172s 21-Feb-25 15:03:07 - [DEBUG]: _record_type_validation: aux passed tests... 172s 21-Feb-25 15:03:07 - [DEBUG]: _record_type_validation: doing aux stuff... 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record: _record_type_validation done 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record: slow5_rec_init() 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record: self.write assignments... 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record: self.write.raw_signal malloc... 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record: self.write.raw_signal malloc done 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record: self.write assignments done 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record: self.write processing raw_signal 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record: self.write raw_signal done 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record: aux stuff... 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record: checked_aux: channel_number: 391 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record: slow5_aux_set_string running... 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record: slow5_aux_set_string type: 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record: slow5_aux_set_string running done: ret = 0 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record: checked_aux: median_before: 260.557264 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record: checked_aux: read_number: 2287 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record: checked_aux: start_mux: 2 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record: checked_aux: start_time: 36886851 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record: aux stuff done 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record: slow5_write() 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record: slow5_write() ret: 32446 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record: slow5_rec_free() 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record: function complete, returning 0 172s 21-Feb-25 15:03:07 - [DEBUG]: slow5_get_next return: -1 172s 21-Feb-25 15:03:07 - [DEBUG]: slow5_get_next reached end of file (EOF)(-1): -1: ['SLOW5_ERR_EOF', 'End Of File reached'] 172s 21-Feb-25 15:03:07 - [DEBUG]: examples/example2.slow5 closed 172s 21-Feb-25 15:03:07 - [DEBUG]: examples/example_write_aux.blow5 closed 172s 21-Feb-25 15:03:07 - [DEBUG]: FILE: examples/example_write_append_aux.blow5, mode: w 172s 21-Feb-25 15:03:07 - [DEBUG]: FILE: b'examples/example_write_append_aux.blow5', mode: b'w' 172s 21-Feb-25 15:03:07 - [DEBUG]: examples/example_write_aux.blow5 already closed 172s 21-Feb-25 15:03:07 - [DEBUG]: pathname: examples/example_write_aux.blow5 172s 21-Feb-25 15:03:07 - [DEBUG]: total_time_slow5_get_next: 0.0 seconds 172s 21-Feb-25 15:03:07 - [DEBUG]: total_time_yield_reads: 0.0 seconds 172s 21-Feb-25 15:03:07 - [DEBUG]: total_single_write_time: 0.028830528259277344 seconds 172s 21-Feb-25 15:03:07 - [DEBUG]: total_multi_write_signal_time: 0.0 seconds 172s 21-Feb-25 15:03:07 - [DEBUG]: total_multi_write_time: 0.0 seconds 172s 21-Feb-25 15:03:07 - [DEBUG]: FILE: examples/example2.slow5, mode: r 172s 21-Feb-25 15:03:07 - [DEBUG]: FILE: b'examples/example2.slow5', mode: b'r' 172s 21-Feb-25 15:03:07 - [DEBUG]: Number of read_groups: 4 172s 21-Feb-25 15:03:07 - [DEBUG]: pathname: examples/example2.slow5 172s 21-Feb-25 15:03:07 - [DEBUG]: total_time_slow5_get_next: 0.022754430770874023 seconds 172s 21-Feb-25 15:03:07 - [DEBUG]: total_time_yield_reads: 0.023608922958374023 seconds 172s 21-Feb-25 15:03:07 - [DEBUG]: total_single_write_time: 0.0 seconds 172s 21-Feb-25 15:03:07 - [DEBUG]: total_multi_write_signal_time: 0.0 seconds 172s 21-Feb-25 15:03:07 - [DEBUG]: total_multi_write_time: 0.0 seconds 172s 21-Feb-25 15:03:07 - [DEBUG]: slow5_get_next return: 0 172s 21-Feb-25 15:03:07 - [DEBUG]: get_aux_names starting 172s 21-Feb-25 15:03:07 - [DEBUG]: get_aux_names aux_len: 5 172s 21-Feb-25 15:03:07 - [DEBUG]: get_aux_types starting 172s 21-Feb-25 15:03:07 - [DEBUG]: get_aux_types aux_len: 5 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record: _record_type_validation running 172s 21-Feb-25 15:03:07 - [DEBUG]: _record_type_validation: doing aux stuff... 172s 21-Feb-25 15:03:07 - [DEBUG]: _record_type_validation: aux passed tests... 172s 21-Feb-25 15:03:07 - [DEBUG]: _record_type_validation: aux passed tests... 172s 21-Feb-25 15:03:07 - [DEBUG]: _record_type_validation: aux passed tests... 172s 21-Feb-25 15:03:07 - [DEBUG]: _record_type_validation: aux passed tests... 172s 21-Feb-25 15:03:07 - [DEBUG]: _record_type_validation: aux passed tests... 172s 21-Feb-25 15:03:07 - [DEBUG]: _record_type_validation: doing aux stuff... 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record: _record_type_validation done 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record: checking header stuff... 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record: writting header... 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record: header written 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record: slow5_rec_init() 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record: self.write assignments... 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record: self.write.raw_signal malloc... 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record: self.write.raw_signal malloc done 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record: self.write assignments done 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record: self.write processing raw_signal 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record: self.write raw_signal done 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record: aux stuff... 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record: checked_aux: channel_number: 281 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record: slow5_aux_set_string running... 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record: slow5_aux_set_string type: 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record: slow5_aux_set_string running done: ret = 0 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record: checked_aux: median_before: 231.363533 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record: checked_aux: read_number: 4019 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record: checked_aux: start_mux: 1 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record: checked_aux: start_time: 78470500 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record: aux stuff done 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record: slow5_write() 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record: slow5_write() ret: 153008 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record: slow5_rec_free() 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record: function complete, returning 0 172s 21-Feb-25 15:03:07 - [DEBUG]: slow5_get_next return: 0 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record: _record_type_validation running 172s 21-Feb-25 15:03:07 - [DEBUG]: _record_type_validation: doing aux stuff... 172s 21-Feb-25 15:03:07 - [DEBUG]: _record_type_validation: aux passed tests... 172s 21-Feb-25 15:03:07 - [DEBUG]: _record_type_validation: aux passed tests... 172s 21-Feb-25 15:03:07 - [DEBUG]: _record_type_validation: aux passed tests... 172s 21-Feb-25 15:03:07 - [DEBUG]: _record_type_validation: aux passed tests... 172s 21-Feb-25 15:03:07 - [DEBUG]: _record_type_validation: aux passed tests... 172s 21-Feb-25 15:03:07 - [DEBUG]: _record_type_validation: doing aux stuff... 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record: _record_type_validation done 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record: slow5_rec_init() 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record: self.write assignments... 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record: self.write.raw_signal malloc... 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record: self.write.raw_signal malloc done 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record: self.write assignments done 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record: self.write processing raw_signal 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record: self.write raw_signal done 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record: aux stuff... 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record: checked_aux: channel_number: 391 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record: slow5_aux_set_string running... 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record: slow5_aux_set_string type: 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record: slow5_aux_set_string running done: ret = 0 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record: checked_aux: median_before: 260.557264 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record: checked_aux: read_number: 2287 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record: checked_aux: start_mux: 2 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record: checked_aux: start_time: 36886851 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record: aux stuff done 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record: slow5_write() 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record: slow5_write() ret: 76416 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record: slow5_rec_free() 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record: function complete, returning 0 172s 21-Feb-25 15:03:07 - [DEBUG]: slow5_get_next return: 0 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record: _record_type_validation running 172s 21-Feb-25 15:03:07 - [DEBUG]: _record_type_validation: doing aux stuff... 172s 21-Feb-25 15:03:07 - [DEBUG]: _record_type_validation: aux passed tests... 172s 21-Feb-25 15:03:07 - [DEBUG]: _record_type_validation: aux passed tests... 172s 21-Feb-25 15:03:07 - [DEBUG]: _record_type_validation: aux passed tests... 172s 21-Feb-25 15:03:07 - [DEBUG]: _record_type_validation: aux passed tests... 172s 21-Feb-25 15:03:07 - [DEBUG]: _record_type_validation: aux passed tests... 172s 21-Feb-25 15:03:07 - [DEBUG]: _record_type_validation: doing aux stuff... 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record: _record_type_validation done 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record: slow5_rec_init() 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record: self.write assignments... 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record: self.write.raw_signal malloc... 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record: self.write.raw_signal malloc done 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record: self.write assignments done 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record: self.write processing raw_signal 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record: self.write raw_signal done 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record: aux stuff... 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record: checked_aux: channel_number: 281 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record: slow5_aux_set_string running... 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record: slow5_aux_set_string type: 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record: slow5_aux_set_string running done: ret = 0 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record: checked_aux: median_before: 231.363533 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record: checked_aux: read_number: 4019 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record: checked_aux: start_mux: 1 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record: checked_aux: start_time: 78470500 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record: aux stuff done 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record: slow5_write() 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record: slow5_write() ret: 153008 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record: slow5_rec_free() 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record: function complete, returning 0 172s 21-Feb-25 15:03:07 - [DEBUG]: slow5_get_next return: 0 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record: _record_type_validation running 172s 21-Feb-25 15:03:07 - [DEBUG]: _record_type_validation: doing aux stuff... 172s 21-Feb-25 15:03:07 - [DEBUG]: _record_type_validation: aux passed tests... 172s 21-Feb-25 15:03:07 - [DEBUG]: _record_type_validation: aux passed tests... 172s 21-Feb-25 15:03:07 - [DEBUG]: _record_type_validation: aux passed tests... 172s 21-Feb-25 15:03:07 - [DEBUG]: _record_type_validation: aux passed tests... 172s 21-Feb-25 15:03:07 - [DEBUG]: _record_type_validation: aux passed tests... 172s 21-Feb-25 15:03:07 - [DEBUG]: _record_type_validation: doing aux stuff... 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record: _record_type_validation done 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record: slow5_rec_init() 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record: self.write assignments... 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record: self.write.raw_signal malloc... 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record: self.write.raw_signal malloc done 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record: self.write assignments done 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record: self.write processing raw_signal 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record: self.write raw_signal done 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record: aux stuff... 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record: checked_aux: channel_number: 391 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record: slow5_aux_set_string running... 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record: slow5_aux_set_string type: 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record: slow5_aux_set_string running done: ret = 0 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record: checked_aux: median_before: 260.557264 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record: checked_aux: read_number: 2287 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record: checked_aux: start_mux: 2 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record: checked_aux: start_time: 36886851 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record: aux stuff done 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record: slow5_write() 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record: slow5_write() ret: 76416 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record: slow5_rec_free() 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record: function complete, returning 0 172s 21-Feb-25 15:03:07 - [DEBUG]: slow5_get_next return: 0 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record: _record_type_validation running 172s 21-Feb-25 15:03:07 - [DEBUG]: _record_type_validation: doing aux stuff... 172s 21-Feb-25 15:03:07 - [DEBUG]: _record_type_validation: aux passed tests... 172s 21-Feb-25 15:03:07 - [DEBUG]: _record_type_validation: aux passed tests... 172s 21-Feb-25 15:03:07 - [DEBUG]: _record_type_validation: aux passed tests... 172s 21-Feb-25 15:03:07 - [DEBUG]: _record_type_validation: aux passed tests... 172s 21-Feb-25 15:03:07 - [DEBUG]: _record_type_validation: aux passed tests... 172s 21-Feb-25 15:03:07 - [DEBUG]: _record_type_validation: doing aux stuff... 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record: _record_type_validation done 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record: slow5_rec_init() 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record: self.write assignments... 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record: self.write.raw_signal malloc... 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record: self.write.raw_signal malloc done 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record: self.write assignments done 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record: self.write processing raw_signal 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record: self.write raw_signal done 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record: aux stuff... 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record: checked_aux: channel_number: 281 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record: slow5_aux_set_string running... 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record: slow5_aux_set_string type: 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record: slow5_aux_set_string running done: ret = 0 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record: checked_aux: median_before: 231.363533 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record: checked_aux: read_number: 4019 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record: checked_aux: start_mux: 1 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record: checked_aux: start_time: 78470500 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record: aux stuff done 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record: slow5_write() 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record: slow5_write() ret: 153008 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record: slow5_rec_free() 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record: function complete, returning 0 172s 21-Feb-25 15:03:07 - [DEBUG]: slow5_get_next return: 0 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record: _record_type_validation running 172s 21-Feb-25 15:03:07 - [DEBUG]: _record_type_validation: doing aux stuff... 172s 21-Feb-25 15:03:07 - [DEBUG]: _record_type_validation: aux passed tests... 172s 21-Feb-25 15:03:07 - [DEBUG]: _record_type_validation: aux passed tests... 172s 21-Feb-25 15:03:07 - [DEBUG]: _record_type_validation: aux passed tests... 172s 21-Feb-25 15:03:07 - [DEBUG]: _record_type_validation: aux passed tests... 172s 21-Feb-25 15:03:07 - [DEBUG]: _record_type_validation: aux passed tests... 172s 21-Feb-25 15:03:07 - [DEBUG]: _record_type_validation: doing aux stuff... 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record: _record_type_validation done 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record: slow5_rec_init() 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record: self.write assignments... 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record: self.write.raw_signal malloc... 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record: self.write.raw_signal malloc done 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record: self.write assignments done 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record: self.write processing raw_signal 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record: self.write raw_signal done 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record: aux stuff... 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record: checked_aux: channel_number: 391 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record: slow5_aux_set_string running... 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record: slow5_aux_set_string type: 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record: slow5_aux_set_string running done: ret = 0 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record: checked_aux: median_before: 260.557264 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record: checked_aux: read_number: 2287 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record: checked_aux: start_mux: 2 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record: checked_aux: start_time: 36886851 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record: aux stuff done 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record: slow5_write() 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record: slow5_write() ret: 76416 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record: slow5_rec_free() 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record: function complete, returning 0 172s 21-Feb-25 15:03:07 - [DEBUG]: slow5_get_next return: 0 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record: _record_type_validation running 172s 21-Feb-25 15:03:07 - [DEBUG]: _record_type_validation: doing aux stuff... 172s 21-Feb-25 15:03:07 - [DEBUG]: _record_type_validation: aux passed tests... 172s 21-Feb-25 15:03:07 - [DEBUG]: _record_type_validation: aux passed tests... 172s 21-Feb-25 15:03:07 - [DEBUG]: _record_type_validation: aux passed tests... 172s 21-Feb-25 15:03:07 - [DEBUG]: _record_type_validation: aux passed tests... 172s 21-Feb-25 15:03:07 - [DEBUG]: _record_type_validation: aux passed tests... 172s 21-Feb-25 15:03:07 - [DEBUG]: _record_type_validation: doing aux stuff... 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record: _record_type_validation done 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record: slow5_rec_init() 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record: self.write assignments... 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record: self.write.raw_signal malloc... 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record: self.write.raw_signal malloc done 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record: self.write assignments done 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record: self.write processing raw_signal 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record: self.write raw_signal done 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record: aux stuff... 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record: checked_aux: channel_number: 281 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record: slow5_aux_set_string running... 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record: slow5_aux_set_string type: 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record: slow5_aux_set_string running done: ret = 0 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record: checked_aux: median_before: 231.363533 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record: checked_aux: read_number: 4019 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record: checked_aux: start_mux: 1 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record: checked_aux: start_time: 78470500 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record: aux stuff done 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record: slow5_write() 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record: slow5_write() ret: 153042 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record: slow5_rec_free() 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record: function complete, returning 0 172s 21-Feb-25 15:03:07 - [DEBUG]: slow5_get_next return: 0 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record: _record_type_validation running 172s 21-Feb-25 15:03:07 - [DEBUG]: _record_type_validation: doing aux stuff... 172s 21-Feb-25 15:03:07 - [DEBUG]: _record_type_validation: aux passed tests... 172s 21-Feb-25 15:03:07 - [DEBUG]: _record_type_validation: aux passed tests... 172s 21-Feb-25 15:03:07 - [DEBUG]: _record_type_validation: aux passed tests... 172s 21-Feb-25 15:03:07 - [DEBUG]: _record_type_validation: aux passed tests... 172s 21-Feb-25 15:03:07 - [DEBUG]: _record_type_validation: aux passed tests... 172s 21-Feb-25 15:03:07 - [DEBUG]: _record_type_validation: doing aux stuff... 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record: _record_type_validation done 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record: slow5_rec_init() 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record: self.write assignments... 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record: self.write.raw_signal malloc... 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record: self.write.raw_signal malloc done 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record: self.write assignments done 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record: self.write processing raw_signal 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record: self.write raw_signal done 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record: aux stuff... 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record: checked_aux: channel_number: 391 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record: slow5_aux_set_string running... 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record: slow5_aux_set_string type: 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record: slow5_aux_set_string running done: ret = 0 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record: checked_aux: median_before: 260.557264 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record: checked_aux: read_number: 2287 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record: checked_aux: start_mux: 2 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record: checked_aux: start_time: 36886851 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record: aux stuff done 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record: slow5_write() 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record: slow5_write() ret: 76450 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record: slow5_rec_free() 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record: function complete, returning 0 172s 21-Feb-25 15:03:07 - [DEBUG]: slow5_get_next return: -1 172s 21-Feb-25 15:03:07 - [DEBUG]: slow5_get_next reached end of file (EOF)(-1): -1: ['SLOW5_ERR_EOF', 'End Of File reached'] 172s 21-Feb-25 15:03:07 - [DEBUG]: examples/example2.slow5 closed 172s 21-Feb-25 15:03:07 - [DEBUG]: examples/example_write_append_aux.blow5 closed 172s 21-Feb-25 15:03:07 - [DEBUG]: FILE: examples/example_write_append_aux.blow5, mode: a 172s 21-Feb-25 15:03:07 - [DEBUG]: FILE: b'examples/example_write_append_aux.blow5', mode: b'a' 172s 21-Feb-25 15:03:07 - [DEBUG]: examples/example_write_append.blow5 already closed 172s 21-Feb-25 15:03:07 - [DEBUG]: pathname: examples/example_write_append.blow5 172s 21-Feb-25 15:03:07 - [DEBUG]: total_time_slow5_get_next: 0.0 seconds 172s 21-Feb-25 15:03:07 - [DEBUG]: total_time_yield_reads: 0.0 seconds 172s 21-Feb-25 15:03:07 - [DEBUG]: total_single_write_time: 0.03284096717834473 seconds 172s 21-Feb-25 15:03:07 - [DEBUG]: total_multi_write_signal_time: 0.0 seconds 172s 21-Feb-25 15:03:07 - [DEBUG]: total_multi_write_time: 0.0 seconds 172s 21-Feb-25 15:03:07 - [DEBUG]: FILE: examples/example2.slow5, mode: r 172s 21-Feb-25 15:03:07 - [DEBUG]: FILE: b'examples/example2.slow5', mode: b'r' 172s 21-Feb-25 15:03:07 - [DEBUG]: Number of read_groups: 4 172s 21-Feb-25 15:03:07 - [DEBUG]: pathname: examples/example2.slow5 172s 21-Feb-25 15:03:07 - [DEBUG]: total_time_slow5_get_next: 0.02460479736328125 seconds 172s 21-Feb-25 15:03:07 - [DEBUG]: total_time_yield_reads: 0.02545475959777832 seconds 172s 21-Feb-25 15:03:07 - [DEBUG]: total_single_write_time: 0.0 seconds 172s 21-Feb-25 15:03:07 - [DEBUG]: total_multi_write_signal_time: 0.0 seconds 172s 21-Feb-25 15:03:07 - [DEBUG]: total_multi_write_time: 0.0 seconds 172s 21-Feb-25 15:03:07 - [DEBUG]: slow5_get_next return: 0 172s 21-Feb-25 15:03:07 - [DEBUG]: get_aux_names starting 172s 21-Feb-25 15:03:07 - [DEBUG]: get_aux_names aux_len: 5 172s 21-Feb-25 15:03:07 - [DEBUG]: get_aux_types starting 172s 21-Feb-25 15:03:07 - [DEBUG]: get_aux_types aux_len: 5 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record: _record_type_validation running 172s 21-Feb-25 15:03:07 - [DEBUG]: _record_type_validation: doing aux stuff... 172s 21-Feb-25 15:03:07 - [DEBUG]: _record_type_validation: aux passed tests... 172s 21-Feb-25 15:03:07 - [DEBUG]: _record_type_validation: aux passed tests... 172s 21-Feb-25 15:03:07 - [DEBUG]: _record_type_validation: aux passed tests... 172s 21-Feb-25 15:03:07 - [DEBUG]: _record_type_validation: aux passed tests... 172s 21-Feb-25 15:03:07 - [DEBUG]: _record_type_validation: aux passed tests... 172s 21-Feb-25 15:03:07 - [DEBUG]: _record_type_validation: doing aux stuff... 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record: _record_type_validation done 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record: slow5_rec_init() 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record: self.write assignments... 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record: self.write.raw_signal malloc... 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record: self.write.raw_signal malloc done 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record: self.write assignments done 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record: self.write processing raw_signal 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record: self.write raw_signal done 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record: aux stuff... 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record: checked_aux: channel_number: 281 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record: slow5_aux_set_string running... 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record: slow5_aux_set_string type: 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record: slow5_aux_set_string running done: ret = 0 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record: checked_aux: median_before: 231.363533 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record: checked_aux: read_number: 4019 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record: checked_aux: start_mux: 1 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record: checked_aux: start_time: 78470500 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record: aux stuff done 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record: slow5_write() 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record: slow5_write() ret: 153015 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record: slow5_rec_free() 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record: function complete, returning 0 172s 21-Feb-25 15:03:07 - [DEBUG]: slow5_get_next return: 0 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record: _record_type_validation running 172s 21-Feb-25 15:03:07 - [DEBUG]: _record_type_validation: doing aux stuff... 172s 21-Feb-25 15:03:07 - [DEBUG]: _record_type_validation: aux passed tests... 172s 21-Feb-25 15:03:07 - [DEBUG]: _record_type_validation: aux passed tests... 172s 21-Feb-25 15:03:07 - [DEBUG]: _record_type_validation: aux passed tests... 172s 21-Feb-25 15:03:07 - [DEBUG]: _record_type_validation: aux passed tests... 172s 21-Feb-25 15:03:07 - [DEBUG]: _record_type_validation: aux passed tests... 172s 21-Feb-25 15:03:07 - [DEBUG]: _record_type_validation: doing aux stuff... 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record: _record_type_validation done 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record: slow5_rec_init() 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record: self.write assignments... 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record: self.write.raw_signal malloc... 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record: self.write.raw_signal malloc done 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record: self.write assignments done 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record: self.write processing raw_signal 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record: self.write raw_signal done 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record: aux stuff... 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record: checked_aux: channel_number: 391 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record: slow5_aux_set_string running... 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record: slow5_aux_set_string type: 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record: slow5_aux_set_string running done: ret = 0 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record: checked_aux: median_before: 260.557264 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record: checked_aux: read_number: 2287 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record: checked_aux: start_mux: 2 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record: checked_aux: start_time: 36886851 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record: aux stuff done 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record: slow5_write() 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record: slow5_write() ret: 76423 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record: slow5_rec_free() 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record: function complete, returning 0 172s 21-Feb-25 15:03:07 - [DEBUG]: slow5_get_next return: 0 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record: _record_type_validation running 172s 21-Feb-25 15:03:07 - [DEBUG]: _record_type_validation: doing aux stuff... 172s 21-Feb-25 15:03:07 - [DEBUG]: _record_type_validation: aux passed tests... 172s 21-Feb-25 15:03:07 - [DEBUG]: _record_type_validation: aux passed tests... 172s 21-Feb-25 15:03:07 - [DEBUG]: _record_type_validation: aux passed tests... 172s 21-Feb-25 15:03:07 - [DEBUG]: _record_type_validation: aux passed tests... 172s 21-Feb-25 15:03:07 - [DEBUG]: _record_type_validation: aux passed tests... 172s 21-Feb-25 15:03:07 - [DEBUG]: _record_type_validation: doing aux stuff... 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record: _record_type_validation done 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record: slow5_rec_init() 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record: self.write assignments... 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record: self.write.raw_signal malloc... 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record: self.write.raw_signal malloc done 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record: self.write assignments done 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record: self.write processing raw_signal 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record: self.write raw_signal done 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record: aux stuff... 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record: checked_aux: channel_number: 281 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record: slow5_aux_set_string running... 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record: slow5_aux_set_string type: 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record: slow5_aux_set_string running done: ret = 0 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record: checked_aux: median_before: 231.363533 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record: checked_aux: read_number: 4019 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record: checked_aux: start_mux: 1 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record: checked_aux: start_time: 78470500 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record: aux stuff done 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record: slow5_write() 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record: slow5_write() ret: 153015 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record: slow5_rec_free() 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record: function complete, returning 0 172s 21-Feb-25 15:03:07 - [DEBUG]: slow5_get_next return: 0 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record: _record_type_validation running 172s 21-Feb-25 15:03:07 - [DEBUG]: _record_type_validation: doing aux stuff... 172s 21-Feb-25 15:03:07 - [DEBUG]: _record_type_validation: aux passed tests... 172s 21-Feb-25 15:03:07 - [DEBUG]: _record_type_validation: aux passed tests... 172s 21-Feb-25 15:03:07 - [DEBUG]: _record_type_validation: aux passed tests... 172s 21-Feb-25 15:03:07 - [DEBUG]: _record_type_validation: aux passed tests... 172s 21-Feb-25 15:03:07 - [DEBUG]: _record_type_validation: aux passed tests... 172s 21-Feb-25 15:03:07 - [DEBUG]: _record_type_validation: doing aux stuff... 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record: _record_type_validation done 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record: slow5_rec_init() 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record: self.write assignments... 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record: self.write.raw_signal malloc... 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record: self.write.raw_signal malloc done 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record: self.write assignments done 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record: self.write processing raw_signal 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record: self.write raw_signal done 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record: aux stuff... 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record: checked_aux: channel_number: 391 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record: slow5_aux_set_string running... 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record: slow5_aux_set_string type: 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record: slow5_aux_set_string running done: ret = 0 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record: checked_aux: median_before: 260.557264 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record: checked_aux: read_number: 2287 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record: checked_aux: start_mux: 2 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record: checked_aux: start_time: 36886851 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record: aux stuff done 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record: slow5_write() 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record: slow5_write() ret: 76423 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record: slow5_rec_free() 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record: function complete, returning 0 172s 21-Feb-25 15:03:07 - [DEBUG]: slow5_get_next return: 0 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record: _record_type_validation running 172s 21-Feb-25 15:03:07 - [DEBUG]: _record_type_validation: doing aux stuff... 172s 21-Feb-25 15:03:07 - [DEBUG]: _record_type_validation: aux passed tests... 172s 21-Feb-25 15:03:07 - [DEBUG]: _record_type_validation: aux passed tests... 172s 21-Feb-25 15:03:07 - [DEBUG]: _record_type_validation: aux passed tests... 172s 21-Feb-25 15:03:07 - [DEBUG]: _record_type_validation: aux passed tests... 172s 21-Feb-25 15:03:07 - [DEBUG]: _record_type_validation: aux passed tests... 172s 21-Feb-25 15:03:07 - [DEBUG]: _record_type_validation: doing aux stuff... 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record: _record_type_validation done 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record: slow5_rec_init() 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record: self.write assignments... 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record: self.write.raw_signal malloc... 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record: self.write.raw_signal malloc done 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record: self.write assignments done 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record: self.write processing raw_signal 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record: self.write raw_signal done 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record: aux stuff... 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record: checked_aux: channel_number: 281 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record: slow5_aux_set_string running... 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record: slow5_aux_set_string type: 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record: slow5_aux_set_string running done: ret = 0 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record: checked_aux: median_before: 231.363533 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record: checked_aux: read_number: 4019 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record: checked_aux: start_mux: 1 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record: checked_aux: start_time: 78470500 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record: aux stuff done 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record: slow5_write() 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record: slow5_write() ret: 153015 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record: slow5_rec_free() 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record: function complete, returning 0 172s 21-Feb-25 15:03:07 - [DEBUG]: slow5_get_next return: 0 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record: _record_type_validation running 172s 21-Feb-25 15:03:07 - [DEBUG]: _record_type_validation: doing aux stuff... 172s 21-Feb-25 15:03:07 - [DEBUG]: _record_type_validation: aux passed tests... 172s 21-Feb-25 15:03:07 - [DEBUG]: _record_type_validation: aux passed tests... 172s 21-Feb-25 15:03:07 - [DEBUG]: _record_type_validation: aux passed tests... 172s 21-Feb-25 15:03:07 - [DEBUG]: _record_type_validation: aux passed tests... 172s 21-Feb-25 15:03:07 - [DEBUG]: _record_type_validation: aux passed tests... 172s 21-Feb-25 15:03:07 - [DEBUG]: _record_type_validation: doing aux stuff... 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record: _record_type_validation done 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record: slow5_rec_init() 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record: self.write assignments... 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record: self.write.raw_signal malloc... 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record: self.write.raw_signal malloc done 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record: self.write assignments done 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record: self.write processing raw_signal 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record: self.write raw_signal done 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record: aux stuff... 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record: checked_aux: channel_number: 391 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record: slow5_aux_set_string running... 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record: slow5_aux_set_string type: 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record: slow5_aux_set_string running done: ret = 0 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record: checked_aux: median_before: 260.557264 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record: checked_aux: read_number: 2287 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record: checked_aux: start_mux: 2 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record: checked_aux: start_time: 36886851 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record: aux stuff done 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record: slow5_write() 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record: slow5_write() ret: 76423 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record: slow5_rec_free() 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record: function complete, returning 0 172s 21-Feb-25 15:03:07 - [DEBUG]: slow5_get_next return: 0 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record: _record_type_validation running 172s 21-Feb-25 15:03:07 - [DEBUG]: _record_type_validation: doing aux stuff... 172s 21-Feb-25 15:03:07 - [DEBUG]: _record_type_validation: aux passed tests... 172s 21-Feb-25 15:03:07 - [DEBUG]: _record_type_validation: aux passed tests... 172s 21-Feb-25 15:03:07 - [DEBUG]: _record_type_validation: aux passed tests... 172s 21-Feb-25 15:03:07 - [DEBUG]: _record_type_validation: aux passed tests... 172s 21-Feb-25 15:03:07 - [DEBUG]: _record_type_validation: aux passed tests... 172s 21-Feb-25 15:03:07 - [DEBUG]: _record_type_validation: doing aux stuff... 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record: _record_type_validation done 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record: slow5_rec_init() 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record: self.write assignments... 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record: self.write.raw_signal malloc... 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record: self.write.raw_signal malloc done 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record: self.write assignments done 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record: self.write processing raw_signal 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record: self.write raw_signal done 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record: aux stuff... 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record: checked_aux: channel_number: 281 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record: slow5_aux_set_string running... 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record: slow5_aux_set_string type: 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record: slow5_aux_set_string running done: ret = 0 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record: checked_aux: median_before: 231.363533 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record: checked_aux: read_number: 4019 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record: checked_aux: start_mux: 1 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record: checked_aux: start_time: 78470500 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record: aux stuff done 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record: slow5_write() 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record: slow5_write() ret: 153049 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record: slow5_rec_free() 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record: function complete, returning 0 172s 21-Feb-25 15:03:07 - [DEBUG]: slow5_get_next return: 0 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record: _record_type_validation running 172s 21-Feb-25 15:03:07 - [DEBUG]: _record_type_validation: doing aux stuff... 172s 21-Feb-25 15:03:07 - [DEBUG]: _record_type_validation: aux passed tests... 172s 21-Feb-25 15:03:07 - [DEBUG]: _record_type_validation: aux passed tests... 172s 21-Feb-25 15:03:07 - [DEBUG]: _record_type_validation: aux passed tests... 172s 21-Feb-25 15:03:07 - [DEBUG]: _record_type_validation: aux passed tests... 172s 21-Feb-25 15:03:07 - [DEBUG]: _record_type_validation: aux passed tests... 172s 21-Feb-25 15:03:07 - [DEBUG]: _record_type_validation: doing aux stuff... 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record: _record_type_validation done 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record: slow5_rec_init() 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record: self.write assignments... 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record: self.write.raw_signal malloc... 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record: self.write.raw_signal malloc done 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record: self.write assignments done 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record: self.write processing raw_signal 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record: self.write raw_signal done 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record: aux stuff... 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record: checked_aux: channel_number: 391 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record: slow5_aux_set_string running... 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record: slow5_aux_set_string type: 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record: slow5_aux_set_string running done: ret = 0 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record: checked_aux: median_before: 260.557264 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record: checked_aux: read_number: 2287 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record: checked_aux: start_mux: 2 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record: checked_aux: start_time: 36886851 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record: aux stuff done 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record: slow5_write() 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record: slow5_write() ret: 76457 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record: slow5_rec_free() 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record: function complete, returning 0 172s 21-Feb-25 15:03:07 - [DEBUG]: slow5_get_next return: -1 172s 21-Feb-25 15:03:07 - [DEBUG]: slow5_get_next reached end of file (EOF)(-1): -1: ['SLOW5_ERR_EOF', 'End Of File reached'] 172s 21-Feb-25 15:03:07 - [DEBUG]: examples/example2.slow5 closed 172s 21-Feb-25 15:03:07 - [DEBUG]: examples/example_write_append_aux.blow5 closed 172s 21-Feb-25 15:03:07 - [DEBUG]: FILE: examples/example2.slow5, mode: r 172s 21-Feb-25 15:03:07 - [DEBUG]: FILE: b'examples/example2.slow5', mode: b'r' 172s 21-Feb-25 15:03:07 - [DEBUG]: Number of read_groups: 4 172s 21-Feb-25 15:03:07 - [DEBUG]: slow5_get_next_multi return: 3 172s 21-Feb-25 15:03:07 - [DEBUG]: get_aux_names starting 172s 21-Feb-25 15:03:07 - [DEBUG]: get_aux_names aux_len: 5 172s 21-Feb-25 15:03:07 - [DEBUG]: get_aux_types starting 172s 21-Feb-25 15:03:07 - [DEBUG]: get_aux_types aux_len: 5 172s 21-Feb-25 15:03:07 - [DEBUG]: slow5_get_next_multi return: 3 172s 21-Feb-25 15:03:07 - [DEBUG]: slow5_get_next_multi return: 2 172s 21-Feb-25 15:03:07 - [DEBUG]: slow5_get_next_multi has no more batches - batchsize:3 ret:2 172s 21-Feb-25 15:03:07 - [DEBUG]: seq_reads_multi timings: 172s 21-Feb-25 15:03:07 - [DEBUG]: aux_total_time: 0.00020766258239746094 172s 21-Feb-25 15:03:07 - [DEBUG]: primary_total_time: 0.00014901161193847656 172s 21-Feb-25 15:03:07 - [DEBUG]: pA_total_time: 0.0013132095336914062 172s 21-Feb-25 15:03:07 - [DEBUG]: signal_total_time: 0.0001342296600341797 172s 21-Feb-25 15:03:07 - [DEBUG]: examples/example2.slow5 closed 172s 21-Feb-25 15:03:07 - [DEBUG]: FILE: examples/example2.slow5, mode: r 172s 21-Feb-25 15:03:07 - [DEBUG]: FILE: b'examples/example2.slow5', mode: b'r' 172s 21-Feb-25 15:03:07 - [DEBUG]: Number of read_groups: 4 172s 21-Feb-25 15:03:07 - [DEBUG]: pathname: examples/example2.slow5 172s 21-Feb-25 15:03:07 - [DEBUG]: total_time_slow5_get_next: 0.013763666152954102 seconds 172s 21-Feb-25 15:03:07 - [DEBUG]: total_time_yield_reads: 0.0016932487487792969 seconds 172s 21-Feb-25 15:03:07 - [DEBUG]: total_single_write_time: 0.0 seconds 172s 21-Feb-25 15:03:07 - [DEBUG]: total_multi_write_signal_time: 0.0 seconds 172s 21-Feb-25 15:03:07 - [DEBUG]: total_multi_write_time: 0.0 seconds 172s 21-Feb-25 15:03:07 - [DEBUG]: FILE: examples/example2.slow5, mode: r 172s 21-Feb-25 15:03:07 - [DEBUG]: Creating/loading index... 172s 21-Feb-25 15:03:07 - [DEBUG]: Setting up batching... 172s 21-Feb-25 15:03:07 - [DEBUG]: read_list: ['r0', 'r1', 'r2', 'r3', 'r4', 'r5', '0a238451-b9ed-446d-a152-badd074006c4', '0d624d4b-671f-40b8-9798-84f2ccc4d7fc'] 172s 21-Feb-25 15:03:07 - [DEBUG]: batch for loop start 172s 21-Feb-25 15:03:07 - [DEBUG]: Batch: r0,r1,r2 172s 21-Feb-25 15:03:07 - [DEBUG]: Starting rid assignment 172s 21-Feb-25 15:03:07 - [DEBUG]: readID: r0, bin: b'r0' 172s 21-Feb-25 15:03:07 - [DEBUG]: readID: r1, bin: b'r1' 172s 21-Feb-25 15:03:07 - [DEBUG]: readID: r2, bin: b'r2' 172s 21-Feb-25 15:03:07 - [DEBUG]: rid assignment complete 172s 21-Feb-25 15:03:07 - [DEBUG]: slow5_get_batch: num_reads: 3 172s 21-Feb-25 15:03:07 - [DEBUG]: get_read_multi slow5_get_batch ret: 3 172s 21-Feb-25 15:03:07 - [DEBUG]: get_aux_names starting 172s 21-Feb-25 15:03:07 - [DEBUG]: get_aux_names aux_len: 5 172s 21-Feb-25 15:03:07 - [DEBUG]: get_aux_types starting 172s 21-Feb-25 15:03:07 - [DEBUG]: get_aux_types aux_len: 5 172s 21-Feb-25 15:03:07 - [DEBUG]: Batch: r3,r4,r5 172s 21-Feb-25 15:03:07 - [DEBUG]: Starting rid assignment 172s 21-Feb-25 15:03:07 - [DEBUG]: readID: r3, bin: b'r3' 172s 21-Feb-25 15:03:07 - [DEBUG]: readID: r4, bin: b'r4' 172s 21-Feb-25 15:03:07 - [DEBUG]: readID: r5, bin: b'r5' 172s 21-Feb-25 15:03:07 - [DEBUG]: rid assignment complete 172s 21-Feb-25 15:03:07 - [DEBUG]: slow5_get_batch: num_reads: 3 172s 21-Feb-25 15:03:07 - [DEBUG]: get_read_multi slow5_get_batch ret: 3 172s 21-Feb-25 15:03:07 - [DEBUG]: Batch: 0a238451-b9ed-446d-a152-badd074006c4,0d624d4b-671f-40b8-9798-84f2ccc4d7fc 172s 21-Feb-25 15:03:07 - [DEBUG]: Starting rid assignment 172s 21-Feb-25 15:03:07 - [DEBUG]: readID: 0a238451-b9ed-446d-a152-badd074006c4, bin: b'0a238451-b9ed-446d-a152-badd074006c4' 172s 21-Feb-25 15:03:07 - [DEBUG]: readID: 0d624d4b-671f-40b8-9798-84f2ccc4d7fc, bin: b'0d624d4b-671f-40b8-9798-84f2ccc4d7fc' 172s 21-Feb-25 15:03:07 - [DEBUG]: rid assignment complete 172s 21-Feb-25 15:03:07 - [DEBUG]: slow5_get_batch: num_reads: 2 172s 21-Feb-25 15:03:07 - [DEBUG]: get_read_multi slow5_get_batch ret: 2 172s 21-Feb-25 15:03:07 - [DEBUG]: seq_reads_multi timings: 172s 21-Feb-25 15:03:07 - [DEBUG]: examples/example2.slow5 closed 172s 21-Feb-25 15:03:07 - [DEBUG]: FILE: examples/example_write_aux_multi.slow5, mode: w 172s 21-Feb-25 15:03:07 - [DEBUG]: FILE: b'examples/example_write_aux_multi.slow5', mode: b'w' 172s 21-Feb-25 15:03:07 - [DEBUG]: Not writing blow5, skipping compression steps 172s 21-Feb-25 15:03:07 - [DEBUG]: examples/example_write_append_aux.blow5 already closed 172s 21-Feb-25 15:03:07 - [DEBUG]: pathname: examples/example_write_append_aux.blow5 172s 21-Feb-25 15:03:07 - [DEBUG]: total_time_slow5_get_next: 0.0 seconds 172s 21-Feb-25 15:03:07 - [DEBUG]: total_time_yield_reads: 0.0 seconds 172s 21-Feb-25 15:03:07 - [DEBUG]: total_single_write_time: 0.03420853614807129 seconds 172s 21-Feb-25 15:03:07 - [DEBUG]: total_multi_write_signal_time: 0.0 seconds 172s 21-Feb-25 15:03:07 - [DEBUG]: total_multi_write_time: 0.0 seconds 172s 21-Feb-25 15:03:07 - [DEBUG]: FILE: examples/example2.slow5, mode: r 172s 21-Feb-25 15:03:07 - [DEBUG]: FILE: b'examples/example2.slow5', mode: b'r' 172s 21-Feb-25 15:03:07 - [DEBUG]: Number of read_groups: 4 172s 21-Feb-25 15:03:07 - [DEBUG]: pathname: examples/example2.slow5 172s 21-Feb-25 15:03:07 - [DEBUG]: total_time_slow5_get_next: 0.02777838706970215 seconds 172s 21-Feb-25 15:03:07 - [DEBUG]: total_time_yield_reads: 0.02892613410949707 seconds 172s 21-Feb-25 15:03:07 - [DEBUG]: total_single_write_time: 0.0 seconds 172s 21-Feb-25 15:03:07 - [DEBUG]: total_multi_write_signal_time: 0.0 seconds 172s 21-Feb-25 15:03:07 - [DEBUG]: total_multi_write_time: 0.0 seconds 172s 21-Feb-25 15:03:07 - [DEBUG]: slow5_get_next return: 0 172s 21-Feb-25 15:03:07 - [DEBUG]: get_aux_names starting 172s 21-Feb-25 15:03:07 - [DEBUG]: get_aux_names aux_len: 5 172s 21-Feb-25 15:03:07 - [DEBUG]: get_aux_types starting 172s 21-Feb-25 15:03:07 - [DEBUG]: get_aux_types aux_len: 5 172s 21-Feb-25 15:03:07 - [DEBUG]: slow5_get_next return: 0 172s 21-Feb-25 15:03:07 - [DEBUG]: slow5_get_next return: 0 172s 21-Feb-25 15:03:07 - [DEBUG]: slow5_get_next return: 0 172s 21-Feb-25 15:03:07 - [DEBUG]: slow5_get_next return: 0 172s 21-Feb-25 15:03:07 - [DEBUG]: slow5_get_next return: 0 172s 21-Feb-25 15:03:07 - [DEBUG]: slow5_get_next return: 0 172s 21-Feb-25 15:03:07 - [DEBUG]: slow5_get_next return: 0 172s 21-Feb-25 15:03:07 - [DEBUG]: slow5_get_next return: -1 172s 21-Feb-25 15:03:07 - [DEBUG]: slow5_get_next reached end of file (EOF)(-1): -1: ['SLOW5_ERR_EOF', 'End Of File reached'] 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record_batch: Setting up batching... 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record_batch: batch for loop start 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record_batch: _record_type_validation running 172s 21-Feb-25 15:03:07 - [DEBUG]: _record_type_validation: doing aux stuff... 172s 21-Feb-25 15:03:07 - [DEBUG]: _record_type_validation: aux passed tests... 172s 21-Feb-25 15:03:07 - [DEBUG]: _record_type_validation: aux passed tests... 172s 21-Feb-25 15:03:07 - [DEBUG]: _record_type_validation: aux passed tests... 172s 21-Feb-25 15:03:07 - [DEBUG]: _record_type_validation: aux passed tests... 172s 21-Feb-25 15:03:07 - [DEBUG]: _record_type_validation: aux passed tests... 172s 21-Feb-25 15:03:07 - [DEBUG]: _record_type_validation: aux stuff done 172s 21-Feb-25 15:03:07 - [DEBUG]: _record_type_validation: doing aux stuff... 172s 21-Feb-25 15:03:07 - [DEBUG]: _record_type_validation: aux passed tests... 172s 21-Feb-25 15:03:07 - [DEBUG]: _record_type_validation: aux passed tests... 172s 21-Feb-25 15:03:07 - [DEBUG]: _record_type_validation: aux passed tests... 172s 21-Feb-25 15:03:07 - [DEBUG]: _record_type_validation: aux passed tests... 172s 21-Feb-25 15:03:07 - [DEBUG]: _record_type_validation: aux passed tests... 172s 21-Feb-25 15:03:07 - [DEBUG]: _record_type_validation: aux stuff done 172s 21-Feb-25 15:03:07 - [DEBUG]: _record_type_validation: doing aux stuff... 172s 21-Feb-25 15:03:07 - [DEBUG]: _record_type_validation: aux passed tests... 172s 21-Feb-25 15:03:07 - [DEBUG]: _record_type_validation: aux passed tests... 172s 21-Feb-25 15:03:07 - [DEBUG]: _record_type_validation: aux passed tests... 172s 21-Feb-25 15:03:07 - [DEBUG]: _record_type_validation: aux passed tests... 172s 21-Feb-25 15:03:07 - [DEBUG]: _record_type_validation: aux passed tests... 172s 21-Feb-25 15:03:07 - [DEBUG]: _record_type_validation: aux stuff done 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record_batch: _record_type_validation done 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record_batch: checking header stuff... 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record_batch: writting header... 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record_batch: header written 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record_batch: slow5_rec_init() 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record_batch: self.write assignments... 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record_batch: self.write.raw_signal malloc... 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record_batch: self.write.raw_signal malloc done 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record_batch: self.write assignments done 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record_batch: self.write processing raw_signal 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record_batch: self.write raw_signal done 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record_batch: aux stuff... 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record_batch: checked_aux: channel_number: 281 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record_batch: slow5_aux_set_string running... 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record_batch: slow5_aux_set_string type: 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record_batch: slow5_aux_set_string running done: ret = 0 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record_batch: checked_aux: median_before: 231.363533 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record_batch: checked_aux: read_number: 4019 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record_batch: checked_aux: start_mux: 1 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record_batch: checked_aux: start_time: 78470500 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record_batch: aux stuff done 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record_batch: slow5_rec_init() 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record_batch: self.write assignments... 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record_batch: self.write.raw_signal malloc... 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record_batch: self.write.raw_signal malloc done 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record_batch: self.write assignments done 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record_batch: self.write processing raw_signal 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record_batch: self.write raw_signal done 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record_batch: aux stuff... 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record_batch: checked_aux: channel_number: 391 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record_batch: slow5_aux_set_string running... 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record_batch: slow5_aux_set_string type: 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record_batch: slow5_aux_set_string running done: ret = 0 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record_batch: checked_aux: median_before: 260.557264 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record_batch: checked_aux: read_number: 2287 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record_batch: checked_aux: start_mux: 2 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record_batch: checked_aux: start_time: 36886851 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record_batch: aux stuff done 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record_batch: slow5_rec_init() 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record_batch: self.write assignments... 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record_batch: self.write.raw_signal malloc... 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record_batch: self.write.raw_signal malloc done 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record_batch: self.write assignments done 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record_batch: self.write processing raw_signal 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record_batch: self.write raw_signal done 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record_batch: aux stuff... 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record_batch: checked_aux: channel_number: 281 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record_batch: slow5_aux_set_string running... 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record_batch: slow5_aux_set_string type: 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record_batch: slow5_aux_set_string running done: ret = 0 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record_batch: checked_aux: median_before: 231.363533 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record_batch: checked_aux: read_number: 4019 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record_batch: checked_aux: start_mux: 1 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record_batch: checked_aux: start_time: 78470500 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record_batch: aux stuff done 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record_batch: slow5_write_batch() 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record_batch: free() 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record_batch: free() aux 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record_batch: _record_type_validation running 172s 21-Feb-25 15:03:07 - [DEBUG]: _record_type_validation: doing aux stuff... 172s 21-Feb-25 15:03:07 - [DEBUG]: _record_type_validation: aux passed tests... 172s 21-Feb-25 15:03:07 - [DEBUG]: _record_type_validation: aux passed tests... 172s 21-Feb-25 15:03:07 - [DEBUG]: _record_type_validation: aux passed tests... 172s 21-Feb-25 15:03:07 - [DEBUG]: _record_type_validation: aux passed tests... 172s 21-Feb-25 15:03:07 - [DEBUG]: _record_type_validation: aux passed tests... 172s 21-Feb-25 15:03:07 - [DEBUG]: _record_type_validation: aux stuff done 172s 21-Feb-25 15:03:07 - [DEBUG]: _record_type_validation: doing aux stuff... 172s 21-Feb-25 15:03:07 - [DEBUG]: _record_type_validation: aux passed tests... 172s 21-Feb-25 15:03:07 - [DEBUG]: _record_type_validation: aux passed tests... 172s 21-Feb-25 15:03:07 - [DEBUG]: _record_type_validation: aux passed tests... 172s 21-Feb-25 15:03:07 - [DEBUG]: _record_type_validation: aux passed tests... 172s 21-Feb-25 15:03:07 - [DEBUG]: _record_type_validation: aux passed tests... 172s 21-Feb-25 15:03:07 - [DEBUG]: _record_type_validation: aux stuff done 172s 21-Feb-25 15:03:07 - [DEBUG]: _record_type_validation: doing aux stuff... 172s 21-Feb-25 15:03:07 - [DEBUG]: _record_type_validation: aux passed tests... 172s 21-Feb-25 15:03:07 - [DEBUG]: _record_type_validation: aux passed tests... 172s 21-Feb-25 15:03:07 - [DEBUG]: _record_type_validation: aux passed tests... 172s 21-Feb-25 15:03:07 - [DEBUG]: _record_type_validation: aux passed tests... 172s 21-Feb-25 15:03:07 - [DEBUG]: _record_type_validation: aux passed tests... 172s 21-Feb-25 15:03:07 - [DEBUG]: _record_type_validation: aux stuff done 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record_batch: _record_type_validation done 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record_batch: slow5_rec_init() 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record_batch: self.write assignments... 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record_batch: self.write.raw_signal malloc... 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record_batch: self.write.raw_signal malloc done 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record_batch: self.write assignments done 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record_batch: self.write processing raw_signal 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record_batch: self.write raw_signal done 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record_batch: aux stuff... 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record_batch: checked_aux: channel_number: 391 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record_batch: slow5_aux_set_string running... 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record_batch: slow5_aux_set_string type: 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record_batch: slow5_aux_set_string running done: ret = 0 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record_batch: checked_aux: median_before: 260.557264 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record_batch: checked_aux: read_number: 2287 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record_batch: checked_aux: start_mux: 2 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record_batch: checked_aux: start_time: 36886851 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record_batch: aux stuff done 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record_batch: slow5_rec_init() 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record_batch: self.write assignments... 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record_batch: self.write.raw_signal malloc... 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record_batch: self.write.raw_signal malloc done 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record_batch: self.write assignments done 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record_batch: self.write processing raw_signal 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record_batch: self.write raw_signal done 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record_batch: aux stuff... 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record_batch: checked_aux: channel_number: 281 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record_batch: slow5_aux_set_string running... 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record_batch: slow5_aux_set_string type: 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record_batch: slow5_aux_set_string running done: ret = 0 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record_batch: checked_aux: median_before: 231.363533 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record_batch: checked_aux: read_number: 4019 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record_batch: checked_aux: start_mux: 1 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record_batch: checked_aux: start_time: 78470500 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record_batch: aux stuff done 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record_batch: slow5_rec_init() 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record_batch: self.write assignments... 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record_batch: self.write.raw_signal malloc... 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record_batch: self.write.raw_signal malloc done 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record_batch: self.write assignments done 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record_batch: self.write processing raw_signal 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record_batch: self.write raw_signal done 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record_batch: aux stuff... 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record_batch: checked_aux: channel_number: 391 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record_batch: slow5_aux_set_string running... 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record_batch: slow5_aux_set_string type: 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record_batch: slow5_aux_set_string running done: ret = 0 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record_batch: checked_aux: median_before: 260.557264 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record_batch: checked_aux: read_number: 2287 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record_batch: checked_aux: start_mux: 2 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record_batch: checked_aux: start_time: 36886851 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record_batch: aux stuff done 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record_batch: slow5_write_batch() 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record_batch: free() 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record_batch: free() aux 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record_batch: _record_type_validation running 172s 21-Feb-25 15:03:07 - [DEBUG]: _record_type_validation: doing aux stuff... 172s 21-Feb-25 15:03:07 - [DEBUG]: _record_type_validation: aux passed tests... 172s 21-Feb-25 15:03:07 - [DEBUG]: _record_type_validation: aux passed tests... 172s 21-Feb-25 15:03:07 - [DEBUG]: _record_type_validation: aux passed tests... 172s 21-Feb-25 15:03:07 - [DEBUG]: _record_type_validation: aux passed tests... 172s 21-Feb-25 15:03:07 - [DEBUG]: _record_type_validation: aux passed tests... 172s 21-Feb-25 15:03:07 - [DEBUG]: _record_type_validation: aux stuff done 172s 21-Feb-25 15:03:07 - [DEBUG]: _record_type_validation: doing aux stuff... 172s 21-Feb-25 15:03:07 - [DEBUG]: _record_type_validation: aux passed tests... 172s 21-Feb-25 15:03:07 - [DEBUG]: _record_type_validation: aux passed tests... 172s 21-Feb-25 15:03:07 - [DEBUG]: _record_type_validation: aux passed tests... 172s 21-Feb-25 15:03:07 - [DEBUG]: _record_type_validation: aux passed tests... 172s 21-Feb-25 15:03:07 - [DEBUG]: _record_type_validation: aux passed tests... 172s 21-Feb-25 15:03:07 - [DEBUG]: _record_type_validation: aux stuff done 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record_batch: _record_type_validation done 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record_batch: slow5_rec_init() 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record_batch: self.write assignments... 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record_batch: self.write.raw_signal malloc... 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record_batch: self.write.raw_signal malloc done 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record_batch: self.write assignments done 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record_batch: self.write processing raw_signal 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record_batch: self.write raw_signal done 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record_batch: aux stuff... 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record_batch: checked_aux: channel_number: 281 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record_batch: slow5_aux_set_string running... 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record_batch: slow5_aux_set_string type: 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record_batch: slow5_aux_set_string running done: ret = 0 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record_batch: checked_aux: median_before: 231.363533 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record_batch: checked_aux: read_number: 4019 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record_batch: checked_aux: start_mux: 1 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record_batch: checked_aux: start_time: 78470500 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record_batch: aux stuff done 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record_batch: slow5_rec_init() 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record_batch: self.write assignments... 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record_batch: self.write.raw_signal malloc... 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record_batch: self.write.raw_signal malloc done 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record_batch: self.write assignments done 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record_batch: self.write processing raw_signal 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record_batch: self.write raw_signal done 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record_batch: aux stuff... 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record_batch: checked_aux: channel_number: 391 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record_batch: slow5_aux_set_string running... 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record_batch: slow5_aux_set_string type: 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record_batch: slow5_aux_set_string running done: ret = 0 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record_batch: checked_aux: median_before: 260.557264 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record_batch: checked_aux: read_number: 2287 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record_batch: checked_aux: start_mux: 2 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record_batch: checked_aux: start_time: 36886851 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record_batch: aux stuff done 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record_batch: slow5_write_batch() 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record_batch: free() 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record_batch: free() aux 172s 21-Feb-25 15:03:07 - [DEBUG]: write_record_batch: function complete, returning 0 172s 21-Feb-25 15:03:07 - [DEBUG]: examples/example2.slow5 closed 172s 21-Feb-25 15:03:07 - [DEBUG]: examples/example_write_aux_multi.slow5 closed 172s 21-Feb-25 15:03:07 - [DEBUG]: FILE: examples/example2.slow5, mode: r 172s 21-Feb-25 15:03:07 - [DEBUG]: FILE: b'examples/example2.slow5', mode: b'r' 172s 21-Feb-25 15:03:07 - [DEBUG]: Number of read_groups: 4 172s 21-Feb-25 15:03:07 - [DEBUG]: pathname: examples/example2.slow5 172s 21-Feb-25 15:03:07 - [DEBUG]: total_time_slow5_get_next: 0.020311355590820312 seconds 172s 21-Feb-25 15:03:07 - [DEBUG]: total_time_yield_reads: 0.021108388900756836 seconds 172s 21-Feb-25 15:03:07 - [DEBUG]: total_single_write_time: 0.0 seconds 172s 21-Feb-25 15:03:07 - [DEBUG]: total_multi_write_signal_time: 0.0 seconds 172s 21-Feb-25 15:03:07 - [DEBUG]: total_multi_write_time: 0.0 seconds 172s 21-Feb-25 15:03:07 - [DEBUG]: FILE: examples/example2.slow5, mode: r 172s 21-Feb-25 15:03:07 - [DEBUG]: Creating/loading index... 172s 21-Feb-25 15:03:07 - [DEBUG]: examples/example2.slow5 closed 172s 172s ret: write_record(): 0 172s ret: write_record(): 0 172s ret: write_record(): 0 172s ret: write_record(): 0 172s ret: write_record(): 0 172s ret: write_record(): 0 172s ret: write_record(): 0 172s ret: write_record(): 0 172s ============================================== 172s write reads with aux 172s ret: write_header(): 0 172s ret: write_header(): 0 172s ret: write_record(): 0 172s ret: write_record(): 0 172s ret: write_record(): 0 172s ret: write_record(): 0 172s ret: write_record(): 0 172s ret: write_record(): 0 172s ret: write_record(): 0 172s ret: write_record(): 0 172s ============================================== 172s append reads with aux 172s ret: write_header(): 0 172s ret: write_header(): 0 172s ret: write_record(): 0 172s ret: write_record(): 0 172s ret: write_record(): 0 172s ret: write_record(): 0 172s ret: write_record(): 0 172s ret: write_record(): 0 172s ret: write_record(): 0 172s ret: write_record(): 0 172s ret: write_record(): 0 172s ret: write_record(): 0 172s ret: write_record(): 0 172s ret: write_record(): 0 172s ret: write_record(): 0 172s ret: write_record(): 0 172s ret: write_record(): 0 172s ret: write_record(): 0 172s ============================================== 172s seq_reads_multi with aux: 172s type check reads: 172s r0 172s read_number 4019 172s r1 172s read_number 2287 172s r2 172s read_number 4019 172s r3 172s read_number 2287 172s r4 172s read_number 4019 172s r5 172s read_number 2287 172s 0a238451-b9ed-446d-a152-badd074006c4 172s read_number 4019 172s 0d624d4b-671f-40b8-9798-84f2ccc4d7fc 172s read_number 2287 172s ============================================== 172s get_reads_multi with aux: 172s type check reads: 172s r0 172s read_number 4019 172s r1 172s read_number 2287 172s r2 172s read_number 4019 172s r3 172s read_number 2287 172s r4 172s read_number 4019 172s r5 172s read_number 2287 172s 0a238451-b9ed-446d-a152-badd074006c4 172s read_number 4019 172s 0d624d4b-671f-40b8-9798-84f2ccc4d7fc 172s read_number 2287 172s ============================================== 172s write reads with aux multi 172s ret: write_header(): 0 172s ret: write_header(): 0 172s {'r0': {'read_id': 'r0', 'read_group': 0, 'digitisation': 8192.0, 'offset': 2.0, 'range': 1444.86, 'sampling_rate': 4000.0, 'len_raw_signal': 76460, 'signal': array([1299, 771, 556, ..., 554, 560, 566], dtype=int16)}, 'r1': {'read_id': 'r1', 'read_group': 0, 'digitisation': 8192.0, 'offset': 6.0, 'range': 1444.86, 'sampling_rate': 4000.0, 'len_raw_signal': 38164, 'signal': array([1462, 1075, 795, ..., 696, 706, 702], dtype=int16)}, 'r2': {'read_id': 'r2', 'read_group': 1, 'digitisation': 8192.0, 'offset': 2.0, 'range': 1444.86, 'sampling_rate': 4000.0, 'len_raw_signal': 76460, 'signal': array([1299, 771, 556, ..., 554, 560, 566], dtype=int16)}, 'r3': {'read_id': 'r3', 'read_group': 1, 'digitisation': 8192.0, 'offset': 6.0, 'range': 1444.86, 'sampling_rate': 4000.0, 'len_raw_signal': 38164, 'signal': array([1462, 1075, 795, ..., 696, 706, 702], dtype=int16)}, 'r4': {'read_id': 'r4', 'read_group': 2, 'digitisation': 8192.0, 'offset': 2.0, 'range': 1444.86, 'sampling_rate': 4000.0, 'len_raw_signal': 76460, 'signal': array([1299, 771, 556, ..., 554, 560, 566], dtype=int16)}, 'r5': {'read_id': 'r5', 'read_group': 2, 'digitisation': 8192.0, 'offset': 6.0, 'range': 1444.86, 'sampling_rate': 4000.0, 'len_raw_signal': 38164, 'signal': array([1462, 1075, 795, ..., 696, 706, 702], dtype=int16)}, '0a238451-b9ed-446d-a152-badd074006c4': {'read_id': '0a238451-b9ed-446d-a152-badd074006c4', 'read_group': 3, 'digitisation': 8192.0, 'offset': 2.0, 'range': 1444.86, 'sampling_rate': 4000.0, 'len_raw_signal': 76460, 'signal': array([1299, 771, 556, ..., 554, 560, 566], dtype=int16)}, '0d624d4b-671f-40b8-9798-84f2ccc4d7fc': {'read_id': '0d624d4b-671f-40b8-9798-84f2ccc4d7fc', 'read_group': 3, 'digitisation': 8192.0, 'offset': 6.0, 'range': 1444.86, 'sampling_rate': 4000.0, 'len_raw_signal': 38164, 'signal': array([1462, 1075, 795, ..., 696, 706, 702], dtype=int16)}} 172s {'r0': {'channel_number': '281', 'median_before': 231.363533, 'read_number': 4019, 'start_mux': 1, 'start_time': 78470500}, 'r1': {'channel_number': '391', 'median_before': 260.557264, 'read_number': 2287, 'start_mux': 2, 'start_time': 36886851}, 'r2': {'channel_number': '281', 'median_before': 231.363533, 'read_number': 4019, 'start_mux': 1, 'start_time': 78470500}, 'r3': {'channel_number': '391', 'median_before': 260.557264, 'read_number': 2287, 'start_mux': 2, 'start_time': 36886851}, 'r4': {'channel_number': '281', 'median_before': 231.363533, 'read_number': 4019, 'start_mux': 1, 'start_time': 78470500}, 'r5': {'channel_number': '391', 'median_before': 260.557264, 'read_number': 2287, 'start_mux': 2, 'start_time': 36886851}, '0a238451-b9ed-446d-a152-badd074006c4': {'channel_number': '281', 'median_before': 231.363533, 'read_number': 4019, 'start_mux': 1, 'start_time': 78470500}, '0d624d4b-671f-40b8-9798-84f2ccc4d7fc': {'channel_number': '391', 'median_before': 260.557264, 'read_number': 2287, 'start_mux': 2, 'start_time': 36886851}} 172s ret: write_record(): 0 172s ============================================== 172s get all readIDs from index 172s ['r0', 'r1', 'r2', 'r3', 'r4', 'r5', '0a238451-b9ed-446d-a152-badd074006c4', '0d624d4b-671f-40b8-9798-84f2ccc4d7fc'] 172s number of reads: 8 172s ============================================== 172s done 172s 21-Feb-25 15:03:07 - [DEBUG]: pathname: examples/example.slow5 172s 21-Feb-25 15:03:07 - [DEBUG]: total_time_slow5_get_next: 0.016579866409301758 seconds 172s 21-Feb-25 15:03:07 - [DEBUG]: total_time_yield_reads: 0.017407894134521484 seconds 172s 21-Feb-25 15:03:07 - [DEBUG]: total_single_write_time: 0.0 seconds 172s 21-Feb-25 15:03:07 - [DEBUG]: total_multi_write_signal_time: 0.0 seconds 172s 21-Feb-25 15:03:07 - [DEBUG]: total_multi_write_time: 0.0 seconds 172s 21-Feb-25 15:03:07 - [DEBUG]: pathname: examples/example2.slow5 172s 21-Feb-25 15:03:07 - [DEBUG]: total_time_slow5_get_next: 0.022517919540405273 seconds 172s 21-Feb-25 15:03:07 - [DEBUG]: total_time_yield_reads: 0.025098323822021484 seconds 172s 21-Feb-25 15:03:07 - [DEBUG]: total_single_write_time: 0.0 seconds 172s 21-Feb-25 15:03:07 - [DEBUG]: total_multi_write_signal_time: 0.0 seconds 172s 21-Feb-25 15:03:07 - [DEBUG]: total_multi_write_time: 0.0 seconds 172s 21-Feb-25 15:03:07 - [DEBUG]: examples/example_write_aux_multi.slow5 already closed 172s 21-Feb-25 15:03:07 - [DEBUG]: pathname: examples/example_write_aux_multi.slow5 172s 21-Feb-25 15:03:07 - [DEBUG]: total_time_slow5_get_next: 0.0 seconds 172s 21-Feb-25 15:03:07 - [DEBUG]: total_time_yield_reads: 0.0 seconds 172s 21-Feb-25 15:03:07 - [DEBUG]: total_single_write_time: 0.0 seconds 172s 21-Feb-25 15:03:07 - [DEBUG]: total_multi_write_signal_time: 0.03258347511291504 seconds 172s 21-Feb-25 15:03:07 - [DEBUG]: total_multi_write_time: 0.06641459465026855 seconds 172s 21-Feb-25 15:03:07 - [DEBUG]: pathname: examples/example2.slow5 172s 21-Feb-25 15:03:07 - [DEBUG]: total_time_slow5_get_next: 0.0 seconds 172s 21-Feb-25 15:03:07 - [DEBUG]: total_time_yield_reads: 0.0 seconds 172s 21-Feb-25 15:03:07 - [DEBUG]: total_single_write_time: 0.0 seconds 172s 21-Feb-25 15:03:07 - [DEBUG]: total_multi_write_signal_time: 0.0 seconds 172s 21-Feb-25 15:03:07 - [DEBUG]: total_multi_write_time: 0.0 seconds 172s 21-Feb-25 15:03:07 - [DEBUG]: examples/example_write_append_aux.blow5 already closed 172s 21-Feb-25 15:03:07 - [DEBUG]: pathname: examples/example_write_append_aux.blow5 172s 21-Feb-25 15:03:07 - [DEBUG]: total_time_slow5_get_next: 0.0 seconds 172s 21-Feb-25 15:03:07 - [DEBUG]: total_time_yield_reads: 0.0 seconds 172s 21-Feb-25 15:03:07 - [DEBUG]: total_single_write_time: 0.03682208061218262 seconds 172s 21-Feb-25 15:03:07 - [DEBUG]: total_multi_write_signal_time: 0.0 seconds 172s 21-Feb-25 15:03:07 - [DEBUG]: total_multi_write_time: 0.0 seconds 172s 21-Feb-25 15:03:07 - [DEBUG]: pathname: examples/example2.slow5 172s 21-Feb-25 15:03:07 - [DEBUG]: total_time_slow5_get_next: 0.0 seconds 172s 21-Feb-25 15:03:07 - [DEBUG]: total_time_yield_reads: 0.0 seconds 172s 21-Feb-25 15:03:07 - [DEBUG]: total_single_write_time: 0.0 seconds 172s 21-Feb-25 15:03:07 - [DEBUG]: total_multi_write_signal_time: 0.0 seconds 172s 21-Feb-25 15:03:07 - [DEBUG]: total_multi_write_time: 0.0 seconds 172s autopkgtest [15:03:07]: test run-pybinding-test: -----------------------] 173s autopkgtest [15:03:08]: test run-pybinding-test: - - - - - - - - - - results - - - - - - - - - - 173s run-pybinding-test PASS 173s autopkgtest [15:03:08]: test run-pkg-test: preparing testbed 267s autopkgtest [15:04:42]: testbed dpkg architecture: ppc64el 268s autopkgtest [15:04:43]: testbed apt version: 2.9.30ubuntu1 268s autopkgtest [15:04:43]: @@@@@@@@@@@@@@@@@@@@ test bed setup 268s autopkgtest [15:04:43]: testbed release detected to be: plucky 269s autopkgtest [15:04:44]: updating testbed package index (apt update) 269s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease [110 kB] 269s Hit:2 http://ftpmaster.internal/ubuntu plucky InRelease 270s Hit:3 http://ftpmaster.internal/ubuntu plucky-updates InRelease 270s Hit:4 http://ftpmaster.internal/ubuntu plucky-security InRelease 270s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/universe Sources [710 kB] 270s Get:6 http://ftpmaster.internal/ubuntu plucky-proposed/restricted Sources [3120 B] 270s Get:7 http://ftpmaster.internal/ubuntu plucky-proposed/main Sources [88.5 kB] 270s Get:8 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse Sources [14.8 kB] 270s Get:9 http://ftpmaster.internal/ubuntu plucky-proposed/main ppc64el Packages [136 kB] 270s Get:10 http://ftpmaster.internal/ubuntu plucky-proposed/restricted ppc64el Packages [760 B] 270s Get:11 http://ftpmaster.internal/ubuntu plucky-proposed/universe ppc64el Packages [648 kB] 270s Get:12 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse ppc64el Packages [4908 B] 270s Fetched 1716 kB in 1s (1739 kB/s) 271s Reading package lists... 272s Reading package lists... 272s Building dependency tree... 272s Reading state information... 272s Calculating upgrade... 272s Calculating upgrade... 272s The following packages will be upgraded: 272s apparmor apport apport-core-dump-handler base-files cloud-init 272s cloud-init-base gcc-14-base libapparmor1 motd-news-config python3-apport 272s python3-problem-report 273s 11 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 273s Need to get 1839 kB of archives. 273s After this operation, 18.4 kB of additional disk space will be used. 273s Get:1 http://ftpmaster.internal/ubuntu plucky/main ppc64el motd-news-config all 13.6ubuntu1 [5168 B] 273s Get:2 http://ftpmaster.internal/ubuntu plucky/main ppc64el base-files ppc64el 13.6ubuntu1 [75.6 kB] 273s Get:3 http://ftpmaster.internal/ubuntu plucky/main ppc64el python3-problem-report all 2.31.0+git20250220-0ubuntu1 [26.0 kB] 273s Get:4 http://ftpmaster.internal/ubuntu plucky/main ppc64el python3-apport all 2.31.0+git20250220-0ubuntu1 [93.5 kB] 273s Get:5 http://ftpmaster.internal/ubuntu plucky/main ppc64el apport-core-dump-handler all 2.31.0+git20250220-0ubuntu1 [18.7 kB] 273s Get:6 http://ftpmaster.internal/ubuntu plucky/main ppc64el apport all 2.31.0+git20250220-0ubuntu1 [83.1 kB] 273s Get:7 http://ftpmaster.internal/ubuntu plucky/main ppc64el gcc-14-base ppc64el 14.2.0-17ubuntu3 [53.6 kB] 273s Get:8 http://ftpmaster.internal/ubuntu plucky/main ppc64el libapparmor1 ppc64el 4.1.0~beta5-0ubuntu5 [58.8 kB] 273s Get:9 http://ftpmaster.internal/ubuntu plucky/main ppc64el apparmor ppc64el 4.1.0~beta5-0ubuntu5 [806 kB] 273s Get:10 http://ftpmaster.internal/ubuntu plucky/main ppc64el cloud-init-base all 25.1-0ubuntu1 [616 kB] 273s Get:11 http://ftpmaster.internal/ubuntu plucky/main ppc64el cloud-init all 25.1-0ubuntu1 [2088 B] 274s Preconfiguring packages ... 274s Fetched 1839 kB in 1s (2744 kB/s) 274s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 106370 files and directories currently installed.) 274s Preparing to unpack .../motd-news-config_13.6ubuntu1_all.deb ... 274s Unpacking motd-news-config (13.6ubuntu1) over (13.5ubuntu3) ... 274s Preparing to unpack .../base-files_13.6ubuntu1_ppc64el.deb ... 274s Unpacking base-files (13.6ubuntu1) over (13.5ubuntu3) ... 274s Setting up base-files (13.6ubuntu1) ... 274s Updating /root/.profile to current default. 275s motd-news.service is a disabled or a static unit not running, not starting it. 275s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 106370 files and directories currently installed.) 275s Preparing to unpack .../0-python3-problem-report_2.31.0+git20250220-0ubuntu1_all.deb ... 275s /usr/bin/py3clean:101: DeprecationWarning: glob.glob1 is deprecated and will be removed in Python 3.15. Use glob.glob and pass a directory to its root_dir argument instead. 275s for fn in glob1(directory, "%s.*" % fname): 275s Unpacking python3-problem-report (2.31.0+git20250220-0ubuntu1) over (2.31.0-0ubuntu5) ... 275s Preparing to unpack .../1-python3-apport_2.31.0+git20250220-0ubuntu1_all.deb ... 275s /usr/bin/py3clean:101: DeprecationWarning: glob.glob1 is deprecated and will be removed in Python 3.15. Use glob.glob and pass a directory to its root_dir argument instead. 275s for fn in glob1(directory, "%s.*" % fname): 275s Unpacking python3-apport (2.31.0+git20250220-0ubuntu1) over (2.31.0-0ubuntu5) ... 275s Preparing to unpack .../2-apport-core-dump-handler_2.31.0+git20250220-0ubuntu1_all.deb ... 275s Unpacking apport-core-dump-handler (2.31.0+git20250220-0ubuntu1) over (2.31.0-0ubuntu5) ... 275s Preparing to unpack .../3-apport_2.31.0+git20250220-0ubuntu1_all.deb ... 275s Unpacking apport (2.31.0+git20250220-0ubuntu1) over (2.31.0-0ubuntu5) ... 275s Preparing to unpack .../4-gcc-14-base_14.2.0-17ubuntu3_ppc64el.deb ... 275s Unpacking gcc-14-base:ppc64el (14.2.0-17ubuntu3) over (14.2.0-17ubuntu1) ... 275s Preparing to unpack .../5-libapparmor1_4.1.0~beta5-0ubuntu5_ppc64el.deb ... 275s Unpacking libapparmor1:ppc64el (4.1.0~beta5-0ubuntu5) over (4.1.0~beta5-0ubuntu4) ... 275s Preparing to unpack .../6-apparmor_4.1.0~beta5-0ubuntu5_ppc64el.deb ... 276s Unpacking apparmor (4.1.0~beta5-0ubuntu5) over (4.1.0~beta5-0ubuntu4) ... 277s Preparing to unpack .../7-cloud-init-base_25.1-0ubuntu1_all.deb ... 277s /usr/bin/py3clean:101: DeprecationWarning: glob.glob1 is deprecated and will be removed in Python 3.15. Use glob.glob and pass a directory to its root_dir argument instead. 277s for fn in glob1(directory, "%s.*" % fname): 277s Unpacking cloud-init-base (25.1-0ubuntu1) over (25.1~3geb1965a4-0ubuntu1) ... 277s Preparing to unpack .../8-cloud-init_25.1-0ubuntu1_all.deb ... 277s Unpacking cloud-init (25.1-0ubuntu1) over (25.1~3geb1965a4-0ubuntu1) ... 277s Setting up motd-news-config (13.6ubuntu1) ... 277s Setting up libapparmor1:ppc64el (4.1.0~beta5-0ubuntu5) ... 277s Setting up gcc-14-base:ppc64el (14.2.0-17ubuntu3) ... 277s Setting up python3-problem-report (2.31.0+git20250220-0ubuntu1) ... 277s Setting up cloud-init-base (25.1-0ubuntu1) ... 280s Setting up python3-apport (2.31.0+git20250220-0ubuntu1) ... 280s Setting up apparmor (4.1.0~beta5-0ubuntu5) ... 280s Installing new version of config file /etc/apparmor.d/fusermount3 ... 281s Reloading AppArmor profiles 283s Setting up cloud-init (25.1-0ubuntu1) ... 283s Setting up apport-core-dump-handler (2.31.0+git20250220-0ubuntu1) ... 284s Setting up apport (2.31.0+git20250220-0ubuntu1) ... 285s apport-autoreport.service is a disabled or a static unit not running, not starting it. 285s Processing triggers for plymouth-theme-ubuntu-text (24.004.60-2ubuntu5) ... 285s Processing triggers for install-info (7.1.1-1) ... 285s Processing triggers for libc-bin (2.40-4ubuntu1) ... 285s Processing triggers for rsyslog (8.2412.0-2ubuntu1) ... 285s Processing triggers for systemd (257.2-3ubuntu1) ... 285s Processing triggers for man-db (2.13.0-1) ... 286s Processing triggers for initramfs-tools (0.145ubuntu2) ... 287s update-initramfs: Generating /boot/initrd.img-6.12.0-15-generic 287s W: No lz4 in /usr/bin:/sbin:/bin, using gzip 296s Reading package lists... 296s Building dependency tree... 296s Reading state information... 296s Solving dependencies... 296s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 296s autopkgtest [15:05:11]: upgrading testbed (apt dist-upgrade and autopurge) 296s Reading package lists... 296s Building dependency tree... 296s Reading state information... 297s Calculating upgrade...Starting pkgProblemResolver with broken count: 0 297s Starting 2 pkgProblemResolver with broken count: 0 297s Done 297s Entering ResolveByKeep 297s 297s Calculating upgrade... 298s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 298s Reading package lists... 298s Building dependency tree... 298s Reading state information... 298s Starting pkgProblemResolver with broken count: 0 298s Starting 2 pkgProblemResolver with broken count: 0 298s Done 298s Solving dependencies... 299s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 299s autopkgtest [15:05:14]: rebooting testbed after setup commands that affected boot 333s Reading package lists... 333s Building dependency tree... 333s Reading state information... 333s Starting pkgProblemResolver with broken count: 0 333s Starting 2 pkgProblemResolver with broken count: 0 333s Done 334s The following NEW packages will be installed: 334s build-essential cpp cpp-14 cpp-14-powerpc64le-linux-gnu 334s cpp-powerpc64le-linux-gnu g++ g++-14 g++-14-powerpc64le-linux-gnu 334s g++-powerpc64le-linux-gnu gcc gcc-14 gcc-14-powerpc64le-linux-gnu 334s gcc-powerpc64le-linux-gnu libasan8 libblas3 libcc1-0 libgcc-14-dev 334s libgfortran5 libgomp1 libisl23 libitm1 liblapack3 liblsan0 libmpc3 334s libquadmath0 libslow5-0t64 libslow5-dev libstdc++-14-dev libstreamvbyte-dev 334s libstreamvbyte0 libtsan2 libubsan1 python3-numpy python3-slow5 zlib1g-dev 334s 0 upgraded, 35 newly installed, 0 to remove and 0 not upgraded. 334s Need to get 68.2 MB of archives. 334s After this operation, 268 MB of additional disk space will be used. 334s Get:1 http://ftpmaster.internal/ubuntu plucky/main ppc64el libisl23 ppc64el 0.27-1 [882 kB] 334s Get:2 http://ftpmaster.internal/ubuntu plucky/main ppc64el libmpc3 ppc64el 1.3.1-1build2 [62.1 kB] 334s Get:3 http://ftpmaster.internal/ubuntu plucky/main ppc64el cpp-14-powerpc64le-linux-gnu ppc64el 14.2.0-17ubuntu3 [10.5 MB] 335s Get:4 http://ftpmaster.internal/ubuntu plucky/main ppc64el cpp-14 ppc64el 14.2.0-17ubuntu3 [1036 B] 335s Get:5 http://ftpmaster.internal/ubuntu plucky/main ppc64el cpp-powerpc64le-linux-gnu ppc64el 4:14.2.0-1ubuntu1 [5566 B] 335s Get:6 http://ftpmaster.internal/ubuntu plucky/main ppc64el cpp ppc64el 4:14.2.0-1ubuntu1 [22.4 kB] 335s Get:7 http://ftpmaster.internal/ubuntu plucky/main ppc64el libcc1-0 ppc64el 15-20250213-1ubuntu1 [48.7 kB] 335s Get:8 http://ftpmaster.internal/ubuntu plucky/main ppc64el libgomp1 ppc64el 15-20250213-1ubuntu1 [168 kB] 335s Get:9 http://ftpmaster.internal/ubuntu plucky/main ppc64el libitm1 ppc64el 15-20250213-1ubuntu1 [32.4 kB] 335s Get:10 http://ftpmaster.internal/ubuntu plucky/main ppc64el libasan8 ppc64el 15-20250213-1ubuntu1 [3009 kB] 335s Get:11 http://ftpmaster.internal/ubuntu plucky/main ppc64el liblsan0 ppc64el 15-20250213-1ubuntu1 [1377 kB] 335s Get:12 http://ftpmaster.internal/ubuntu plucky/main ppc64el libtsan2 ppc64el 15-20250213-1ubuntu1 [2734 kB] 335s Get:13 http://ftpmaster.internal/ubuntu plucky/main ppc64el libubsan1 ppc64el 15-20250213-1ubuntu1 [1234 kB] 335s Get:14 http://ftpmaster.internal/ubuntu plucky/main ppc64el libquadmath0 ppc64el 15-20250213-1ubuntu1 [160 kB] 335s Get:15 http://ftpmaster.internal/ubuntu plucky/main ppc64el libgcc-14-dev ppc64el 14.2.0-17ubuntu3 [1619 kB] 335s Get:16 http://ftpmaster.internal/ubuntu plucky/main ppc64el gcc-14-powerpc64le-linux-gnu ppc64el 14.2.0-17ubuntu3 [20.6 MB] 336s Get:17 http://ftpmaster.internal/ubuntu plucky/main ppc64el gcc-14 ppc64el 14.2.0-17ubuntu3 [536 kB] 336s Get:18 http://ftpmaster.internal/ubuntu plucky/main ppc64el gcc-powerpc64le-linux-gnu ppc64el 4:14.2.0-1ubuntu1 [1226 B] 336s Get:19 http://ftpmaster.internal/ubuntu plucky/main ppc64el gcc ppc64el 4:14.2.0-1ubuntu1 [5012 B] 336s Get:20 http://ftpmaster.internal/ubuntu plucky/main ppc64el libstdc++-14-dev ppc64el 14.2.0-17ubuntu3 [2678 kB] 336s Get:21 http://ftpmaster.internal/ubuntu plucky/main ppc64el g++-14-powerpc64le-linux-gnu ppc64el 14.2.0-17ubuntu3 [12.0 MB] 336s Get:22 http://ftpmaster.internal/ubuntu plucky/main ppc64el g++-14 ppc64el 14.2.0-17ubuntu3 [21.8 kB] 336s Get:23 http://ftpmaster.internal/ubuntu plucky/main ppc64el g++-powerpc64le-linux-gnu ppc64el 4:14.2.0-1ubuntu1 [966 B] 336s Get:24 http://ftpmaster.internal/ubuntu plucky/main ppc64el g++ ppc64el 4:14.2.0-1ubuntu1 [1088 B] 336s Get:25 http://ftpmaster.internal/ubuntu plucky-proposed/main ppc64el build-essential ppc64el 12.12 [4614 B] 336s Get:26 http://ftpmaster.internal/ubuntu plucky/main ppc64el libblas3 ppc64el 3.12.1-2 [239 kB] 336s Get:27 http://ftpmaster.internal/ubuntu plucky/main ppc64el libgfortran5 ppc64el 15-20250213-1ubuntu1 [613 kB] 336s Get:28 http://ftpmaster.internal/ubuntu plucky/main ppc64el liblapack3 ppc64el 3.12.1-2 [2813 kB] 336s Get:29 http://ftpmaster.internal/ubuntu plucky/universe ppc64el libslow5-0t64 ppc64el 0.7.0+dfsg-3build2 [71.3 kB] 336s Get:30 http://ftpmaster.internal/ubuntu plucky/universe ppc64el libslow5-dev ppc64el 0.7.0+dfsg-3build2 [103 kB] 336s Get:31 http://ftpmaster.internal/ubuntu plucky/universe ppc64el libstreamvbyte0 ppc64el 0.4.1-4ubuntu1 [6400 B] 336s Get:32 http://ftpmaster.internal/ubuntu plucky/universe ppc64el libstreamvbyte-dev ppc64el 0.4.1-4ubuntu1 [6678 B] 336s Get:33 http://ftpmaster.internal/ubuntu plucky/main ppc64el python3-numpy ppc64el 1:1.26.4+ds-13 [5146 kB] 336s Get:34 http://ftpmaster.internal/ubuntu plucky/universe ppc64el python3-slow5 ppc64el 0.7.0+dfsg-3build2 [576 kB] 336s Get:35 http://ftpmaster.internal/ubuntu plucky/main ppc64el zlib1g-dev ppc64el 1:1.3.dfsg+really1.3.1-1ubuntu1 [902 kB] 337s Fetched 68.2 MB in 3s (23.1 MB/s) 337s Selecting previously unselected package libisl23:ppc64el. 337s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 106371 files and directories currently installed.) 337s Preparing to unpack .../00-libisl23_0.27-1_ppc64el.deb ... 337s Unpacking libisl23:ppc64el (0.27-1) ... 337s Selecting previously unselected package libmpc3:ppc64el. 337s Preparing to unpack .../01-libmpc3_1.3.1-1build2_ppc64el.deb ... 337s Unpacking libmpc3:ppc64el (1.3.1-1build2) ... 337s Selecting previously unselected package cpp-14-powerpc64le-linux-gnu. 337s Preparing to unpack .../02-cpp-14-powerpc64le-linux-gnu_14.2.0-17ubuntu3_ppc64el.deb ... 337s Unpacking cpp-14-powerpc64le-linux-gnu (14.2.0-17ubuntu3) ... 337s Selecting previously unselected package cpp-14. 337s Preparing to unpack .../03-cpp-14_14.2.0-17ubuntu3_ppc64el.deb ... 337s Unpacking cpp-14 (14.2.0-17ubuntu3) ... 337s Selecting previously unselected package cpp-powerpc64le-linux-gnu. 337s Preparing to unpack .../04-cpp-powerpc64le-linux-gnu_4%3a14.2.0-1ubuntu1_ppc64el.deb ... 337s Unpacking cpp-powerpc64le-linux-gnu (4:14.2.0-1ubuntu1) ... 337s Selecting previously unselected package cpp. 337s Preparing to unpack .../05-cpp_4%3a14.2.0-1ubuntu1_ppc64el.deb ... 337s Unpacking cpp (4:14.2.0-1ubuntu1) ... 337s Selecting previously unselected package libcc1-0:ppc64el. 337s Preparing to unpack .../06-libcc1-0_15-20250213-1ubuntu1_ppc64el.deb ... 337s Unpacking libcc1-0:ppc64el (15-20250213-1ubuntu1) ... 337s Selecting previously unselected package libgomp1:ppc64el. 337s Preparing to unpack .../07-libgomp1_15-20250213-1ubuntu1_ppc64el.deb ... 337s Unpacking libgomp1:ppc64el (15-20250213-1ubuntu1) ... 338s Selecting previously unselected package libitm1:ppc64el. 338s Preparing to unpack .../08-libitm1_15-20250213-1ubuntu1_ppc64el.deb ... 338s Unpacking libitm1:ppc64el (15-20250213-1ubuntu1) ... 338s Selecting previously unselected package libasan8:ppc64el. 338s Preparing to unpack .../09-libasan8_15-20250213-1ubuntu1_ppc64el.deb ... 338s Unpacking libasan8:ppc64el (15-20250213-1ubuntu1) ... 338s Selecting previously unselected package liblsan0:ppc64el. 338s Preparing to unpack .../10-liblsan0_15-20250213-1ubuntu1_ppc64el.deb ... 338s Unpacking liblsan0:ppc64el (15-20250213-1ubuntu1) ... 338s Selecting previously unselected package libtsan2:ppc64el. 338s Preparing to unpack .../11-libtsan2_15-20250213-1ubuntu1_ppc64el.deb ... 338s Unpacking libtsan2:ppc64el (15-20250213-1ubuntu1) ... 338s Selecting previously unselected package libubsan1:ppc64el. 338s Preparing to unpack .../12-libubsan1_15-20250213-1ubuntu1_ppc64el.deb ... 338s Unpacking libubsan1:ppc64el (15-20250213-1ubuntu1) ... 338s Selecting previously unselected package libquadmath0:ppc64el. 338s Preparing to unpack .../13-libquadmath0_15-20250213-1ubuntu1_ppc64el.deb ... 338s Unpacking libquadmath0:ppc64el (15-20250213-1ubuntu1) ... 338s Selecting previously unselected package libgcc-14-dev:ppc64el. 338s Preparing to unpack .../14-libgcc-14-dev_14.2.0-17ubuntu3_ppc64el.deb ... 338s Unpacking libgcc-14-dev:ppc64el (14.2.0-17ubuntu3) ... 338s Selecting previously unselected package gcc-14-powerpc64le-linux-gnu. 338s Preparing to unpack .../15-gcc-14-powerpc64le-linux-gnu_14.2.0-17ubuntu3_ppc64el.deb ... 338s Unpacking gcc-14-powerpc64le-linux-gnu (14.2.0-17ubuntu3) ... 338s Selecting previously unselected package gcc-14. 338s Preparing to unpack .../16-gcc-14_14.2.0-17ubuntu3_ppc64el.deb ... 338s Unpacking gcc-14 (14.2.0-17ubuntu3) ... 338s Selecting previously unselected package gcc-powerpc64le-linux-gnu. 338s Preparing to unpack .../17-gcc-powerpc64le-linux-gnu_4%3a14.2.0-1ubuntu1_ppc64el.deb ... 338s Unpacking gcc-powerpc64le-linux-gnu (4:14.2.0-1ubuntu1) ... 338s Selecting previously unselected package gcc. 338s Preparing to unpack .../18-gcc_4%3a14.2.0-1ubuntu1_ppc64el.deb ... 338s Unpacking gcc (4:14.2.0-1ubuntu1) ... 338s Selecting previously unselected package libstdc++-14-dev:ppc64el. 338s Preparing to unpack .../19-libstdc++-14-dev_14.2.0-17ubuntu3_ppc64el.deb ... 338s Unpacking libstdc++-14-dev:ppc64el (14.2.0-17ubuntu3) ... 338s Selecting previously unselected package g++-14-powerpc64le-linux-gnu. 338s Preparing to unpack .../20-g++-14-powerpc64le-linux-gnu_14.2.0-17ubuntu3_ppc64el.deb ... 338s Unpacking g++-14-powerpc64le-linux-gnu (14.2.0-17ubuntu3) ... 339s Selecting previously unselected package g++-14. 339s Preparing to unpack .../21-g++-14_14.2.0-17ubuntu3_ppc64el.deb ... 339s Unpacking g++-14 (14.2.0-17ubuntu3) ... 339s Selecting previously unselected package g++-powerpc64le-linux-gnu. 339s Preparing to unpack .../22-g++-powerpc64le-linux-gnu_4%3a14.2.0-1ubuntu1_ppc64el.deb ... 339s Unpacking g++-powerpc64le-linux-gnu (4:14.2.0-1ubuntu1) ... 339s Selecting previously unselected package g++. 339s Preparing to unpack .../23-g++_4%3a14.2.0-1ubuntu1_ppc64el.deb ... 339s Unpacking g++ (4:14.2.0-1ubuntu1) ... 339s Selecting previously unselected package build-essential. 339s Preparing to unpack .../24-build-essential_12.12_ppc64el.deb ... 339s Unpacking build-essential (12.12) ... 339s Selecting previously unselected package libblas3:ppc64el. 339s Preparing to unpack .../25-libblas3_3.12.1-2_ppc64el.deb ... 339s Unpacking libblas3:ppc64el (3.12.1-2) ... 339s Selecting previously unselected package libgfortran5:ppc64el. 339s Preparing to unpack .../26-libgfortran5_15-20250213-1ubuntu1_ppc64el.deb ... 339s Unpacking libgfortran5:ppc64el (15-20250213-1ubuntu1) ... 339s Selecting previously unselected package liblapack3:ppc64el. 339s Preparing to unpack .../27-liblapack3_3.12.1-2_ppc64el.deb ... 339s Unpacking liblapack3:ppc64el (3.12.1-2) ... 339s Selecting previously unselected package libslow5-0t64:ppc64el. 339s Preparing to unpack .../28-libslow5-0t64_0.7.0+dfsg-3build2_ppc64el.deb ... 339s Unpacking libslow5-0t64:ppc64el (0.7.0+dfsg-3build2) ... 339s Selecting previously unselected package libslow5-dev:ppc64el. 339s Preparing to unpack .../29-libslow5-dev_0.7.0+dfsg-3build2_ppc64el.deb ... 339s Unpacking libslow5-dev:ppc64el (0.7.0+dfsg-3build2) ... 339s Selecting previously unselected package libstreamvbyte0:ppc64el. 339s Preparing to unpack .../30-libstreamvbyte0_0.4.1-4ubuntu1_ppc64el.deb ... 339s Unpacking libstreamvbyte0:ppc64el (0.4.1-4ubuntu1) ... 339s Selecting previously unselected package libstreamvbyte-dev:ppc64el. 339s Preparing to unpack .../31-libstreamvbyte-dev_0.4.1-4ubuntu1_ppc64el.deb ... 339s Unpacking libstreamvbyte-dev:ppc64el (0.4.1-4ubuntu1) ... 339s Selecting previously unselected package python3-numpy. 339s Preparing to unpack .../32-python3-numpy_1%3a1.26.4+ds-13_ppc64el.deb ... 339s Unpacking python3-numpy (1:1.26.4+ds-13) ... 339s Selecting previously unselected package python3-slow5. 339s Preparing to unpack .../33-python3-slow5_0.7.0+dfsg-3build2_ppc64el.deb ... 339s Unpacking python3-slow5 (0.7.0+dfsg-3build2) ... 339s Selecting previously unselected package zlib1g-dev:ppc64el. 339s Preparing to unpack .../34-zlib1g-dev_1%3a1.3.dfsg+really1.3.1-1ubuntu1_ppc64el.deb ... 339s Unpacking zlib1g-dev:ppc64el (1:1.3.dfsg+really1.3.1-1ubuntu1) ... 339s Setting up libstreamvbyte0:ppc64el (0.4.1-4ubuntu1) ... 339s Setting up libgomp1:ppc64el (15-20250213-1ubuntu1) ... 339s Setting up libblas3:ppc64el (3.12.1-2) ... 339s update-alternatives: using /usr/lib/powerpc64le-linux-gnu/blas/libblas.so.3 to provide /usr/lib/powerpc64le-linux-gnu/libblas.so.3 (libblas.so.3-powerpc64le-linux-gnu) in auto mode 339s Setting up libstreamvbyte-dev:ppc64el (0.4.1-4ubuntu1) ... 339s Setting up libquadmath0:ppc64el (15-20250213-1ubuntu1) ... 339s Setting up libmpc3:ppc64el (1.3.1-1build2) ... 339s Setting up libslow5-0t64:ppc64el (0.7.0+dfsg-3build2) ... 339s Setting up libgfortran5:ppc64el (15-20250213-1ubuntu1) ... 339s Setting up libubsan1:ppc64el (15-20250213-1ubuntu1) ... 339s Setting up zlib1g-dev:ppc64el (1:1.3.dfsg+really1.3.1-1ubuntu1) ... 339s Setting up libasan8:ppc64el (15-20250213-1ubuntu1) ... 339s Setting up libtsan2:ppc64el (15-20250213-1ubuntu1) ... 339s Setting up libisl23:ppc64el (0.27-1) ... 339s Setting up libcc1-0:ppc64el (15-20250213-1ubuntu1) ... 339s Setting up liblsan0:ppc64el (15-20250213-1ubuntu1) ... 339s Setting up libitm1:ppc64el (15-20250213-1ubuntu1) ... 339s Setting up liblapack3:ppc64el (3.12.1-2) ... 339s update-alternatives: using /usr/lib/powerpc64le-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/powerpc64le-linux-gnu/liblapack.so.3 (liblapack.so.3-powerpc64le-linux-gnu) in auto mode 339s Setting up libslow5-dev:ppc64el (0.7.0+dfsg-3build2) ... 339s Setting up cpp-14-powerpc64le-linux-gnu (14.2.0-17ubuntu3) ... 339s Setting up python3-numpy (1:1.26.4+ds-13) ... 341s Setting up cpp-14 (14.2.0-17ubuntu3) ... 341s Setting up libgcc-14-dev:ppc64el (14.2.0-17ubuntu3) ... 341s Setting up libstdc++-14-dev:ppc64el (14.2.0-17ubuntu3) ... 341s Setting up cpp-powerpc64le-linux-gnu (4:14.2.0-1ubuntu1) ... 341s Setting up gcc-14-powerpc64le-linux-gnu (14.2.0-17ubuntu3) ... 341s Setting up g++-14-powerpc64le-linux-gnu (14.2.0-17ubuntu3) ... 341s Setting up gcc-14 (14.2.0-17ubuntu3) ... 341s Setting up gcc-powerpc64le-linux-gnu (4:14.2.0-1ubuntu1) ... 341s Setting up python3-slow5 (0.7.0+dfsg-3build2) ... 341s Setting up cpp (4:14.2.0-1ubuntu1) ... 341s Setting up g++-14 (14.2.0-17ubuntu3) ... 341s Setting up g++-powerpc64le-linux-gnu (4:14.2.0-1ubuntu1) ... 341s Setting up gcc (4:14.2.0-1ubuntu1) ... 341s Setting up g++ (4:14.2.0-1ubuntu1) ... 341s update-alternatives: using /usr/bin/g++ to provide /usr/bin/c++ (c++) in auto mode 341s Setting up build-essential (12.12) ... 341s Processing triggers for man-db (2.13.0-1) ... 342s Processing triggers for libc-bin (2.40-4ubuntu1) ... 347s autopkgtest [15:06:02]: test run-pkg-test: [----------------------- 347s Checking unit_test_ascii.c 347s Done! 347s Checking unit_test_binary.c 348s Done! 348s Checking unit_test_empty.c 348s Done! 348s Checking unit_test_enum.c 348s Done! 348s Checking unit_test_helpers.c 348s Done! 348s Checking unit_test_lossless.c 348s Done! 348s Checking unit_test_press.c 348s Done! 348s Checking unit_test_two_rg.c 348s Done! 349s autopkgtest [15:06:04]: test run-pkg-test: -----------------------] 349s run-pkg-test PASS 349s autopkgtest [15:06:04]: test run-pkg-test: - - - - - - - - - - results - - - - - - - - - - 349s autopkgtest [15:06:04]: @@@@@@@@@@@@@@@@@@@@ summary 349s run-pybinding-test PASS 349s run-pkg-test PASS 366s nova [W] Using flock in prodstack6-ppc64el 366s Creating nova instance adt-plucky-ppc64el-libslow5lib-20250221-144035-juju-7f2275-prod-proposed-migration-environment-20-0ac67be6-75d1-4dc1-b22e-55e0ef5e9353 from image adt/ubuntu-plucky-ppc64el-server-20250221.img (UUID 2f98d860-9c02-405f-ad5b-1c2fc9874794)... 366s nova [W] Timed out waiting for ca164739-0d1d-4e9d-ad0a-c40a0be9cd4a to get deleted. 366s nova [W] Using flock in prodstack6-ppc64el 366s Creating nova instance adt-plucky-ppc64el-libslow5lib-20250221-144035-juju-7f2275-prod-proposed-migration-environment-20-0ac67be6-75d1-4dc1-b22e-55e0ef5e9353 from image adt/ubuntu-plucky-ppc64el-server-20250221.img (UUID 2f98d860-9c02-405f-ad5b-1c2fc9874794)... 366s nova [W] Timed out waiting for 7787a767-352d-41f1-a2c7-cb203a0d8928 to get deleted.