0s autopkgtest [16:45:32]: starting date and time: 2024-11-14 16:45:32+0000
  0s autopkgtest [16:45:32]: git checkout: 6f3be7a8 Fix armhf LXD image generation for plucky
  0s autopkgtest [16:45:32]: host juju-7f2275-prod-proposed-migration-environment-15; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.6gz644bq/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:pyyaml --apt-upgrade idseq-bench --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=pyyaml/6.0.2-1build1 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest-ppc64el --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-15@bos03-ppc64el-2.secgroup --name adt-plucky-ppc64el-idseq-bench-20241114-164532-juju-7f2275-prod-proposed-migration-environment-15-aa78787a-7161-4e04-8733-1b4a694aa4d3 --image adt/ubuntu-plucky-ppc64el-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-15 --net-id=net_prod-proposed-migration-ppc64el -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,keyserver.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/
103s autopkgtest [16:47:15]: testbed dpkg architecture: ppc64el
103s autopkgtest [16:47:15]: testbed apt version: 2.9.8
103s autopkgtest [16:47:15]: @@@@@@@@@@@@@@@@@@@@ test bed setup
104s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease [73.9 kB]
104s Get:2 http://ftpmaster.internal/ubuntu plucky-proposed/main Sources [105 kB]
105s Get:3 http://ftpmaster.internal/ubuntu plucky-proposed/restricted Sources [7016 B]
105s Get:4 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse Sources [14.6 kB]
105s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/universe Sources [951 kB]
105s Get:6 http://ftpmaster.internal/ubuntu plucky-proposed/main ppc64el Packages [118 kB]
105s Get:7 http://ftpmaster.internal/ubuntu plucky-proposed/universe ppc64el Packages [701 kB]
105s Get:8 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse ppc64el Packages [8008 B]
105s Fetched 1979 kB in 1s (1922 kB/s)
105s Reading package lists...
108s Reading package lists...
108s Building dependency tree...
108s Reading state information...
108s Calculating upgrade...
108s The following packages will be upgraded:
108s   bpfcc-tools bpftrace libbpfcc libcap-ng0 libgnutls30t64 libjson-glib-1.0-0
108s   libjson-glib-1.0-common libnewt0.52 libutempter0 pastebinit python3-bpfcc
108s   python3-newt python3-systemd python3-yaml whiptail
109s 15 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
109s Need to get 4858 kB of archives.
109s After this operation, 758 kB of additional disk space will be used.
109s Get:1 http://ftpmaster.internal/ubuntu plucky/main ppc64el libcap-ng0 ppc64el 0.8.5-3build1 [16.3 kB]
109s Get:2 http://ftpmaster.internal/ubuntu plucky/main ppc64el libgnutls30t64 ppc64el 3.8.8-2ubuntu1 [1072 kB]
109s Get:3 http://ftpmaster.internal/ubuntu plucky/main ppc64el python3-newt ppc64el 0.52.24-2ubuntu4 [21.8 kB]
109s Get:4 http://ftpmaster.internal/ubuntu plucky/main ppc64el libnewt0.52 ppc64el 0.52.24-2ubuntu4 [62.1 kB]
109s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/main ppc64el python3-yaml ppc64el 6.0.2-1build1 [180 kB]
109s Get:6 http://ftpmaster.internal/ubuntu plucky/main ppc64el whiptail ppc64el 0.52.24-2ubuntu4 [19.5 kB]
109s Get:7 http://ftpmaster.internal/ubuntu plucky/main ppc64el libbpfcc ppc64el 0.30.0+ds-1ubuntu5 [696 kB]
109s Get:8 http://ftpmaster.internal/ubuntu plucky/main ppc64el python3-bpfcc all 0.30.0+ds-1ubuntu5 [40.4 kB]
109s Get:9 http://ftpmaster.internal/ubuntu plucky/main ppc64el bpfcc-tools all 0.30.0+ds-1ubuntu5 [697 kB]
109s Get:10 http://ftpmaster.internal/ubuntu plucky/main ppc64el bpftrace ppc64el 0.21.2-2ubuntu2 [1898 kB]
109s Get:11 http://ftpmaster.internal/ubuntu plucky/main ppc64el libjson-glib-1.0-common all 1.10.0+ds-3 [5586 B]
109s Get:12 http://ftpmaster.internal/ubuntu plucky/main ppc64el libjson-glib-1.0-0 ppc64el 1.10.0+ds-3 [76.0 kB]
109s Get:13 http://ftpmaster.internal/ubuntu plucky/main ppc64el libutempter0 ppc64el 1.2.1-4 [9850 B]
109s Get:14 http://ftpmaster.internal/ubuntu plucky/main ppc64el pastebinit all 1.7.1-1 [14.9 kB]
109s Get:15 http://ftpmaster.internal/ubuntu plucky/main ppc64el python3-systemd ppc64el 235-1build5 [48.7 kB]
110s Fetched 4858 kB in 1s (6200 kB/s)
110s (Reading database ... 
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(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 73767 files and directories currently installed.)
110s Preparing to unpack .../libcap-ng0_0.8.5-3build1_ppc64el.deb ...
110s Unpacking libcap-ng0:ppc64el (0.8.5-3build1) over (0.8.5-1) ...
110s Setting up libcap-ng0:ppc64el (0.8.5-3build1) ...
110s (Reading database ... 
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(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 73767 files and directories currently installed.)
110s Preparing to unpack .../libgnutls30t64_3.8.8-2ubuntu1_ppc64el.deb ...
110s Unpacking libgnutls30t64:ppc64el (3.8.8-2ubuntu1) over (3.8.6-2ubuntu1) ...
110s Setting up libgnutls30t64:ppc64el (3.8.8-2ubuntu1) ...
110s (Reading database ... 
(Reading database ... 5%
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(Reading database ... 60%
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(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 73767 files and directories currently installed.)
110s Preparing to unpack .../00-python3-newt_0.52.24-2ubuntu4_ppc64el.deb ...
110s Unpacking python3-newt:ppc64el (0.52.24-2ubuntu4) over (0.52.24-2ubuntu3) ...
110s Preparing to unpack .../01-libnewt0.52_0.52.24-2ubuntu4_ppc64el.deb ...
110s Unpacking libnewt0.52:ppc64el (0.52.24-2ubuntu4) over (0.52.24-2ubuntu3) ...
110s Preparing to unpack .../02-python3-yaml_6.0.2-1build1_ppc64el.deb ...
110s Unpacking python3-yaml (6.0.2-1build1) over (6.0.2-1) ...
110s Preparing to unpack .../03-whiptail_0.52.24-2ubuntu4_ppc64el.deb ...
110s Unpacking whiptail (0.52.24-2ubuntu4) over (0.52.24-2ubuntu3) ...
110s Preparing to unpack .../04-libbpfcc_0.30.0+ds-1ubuntu5_ppc64el.deb ...
110s Unpacking libbpfcc:ppc64el (0.30.0+ds-1ubuntu5) over (0.30.0+ds-1ubuntu4) ...
110s Preparing to unpack .../05-python3-bpfcc_0.30.0+ds-1ubuntu5_all.deb ...
111s Unpacking python3-bpfcc (0.30.0+ds-1ubuntu5) over (0.30.0+ds-1ubuntu4) ...
111s Preparing to unpack .../06-bpfcc-tools_0.30.0+ds-1ubuntu5_all.deb ...
111s Unpacking bpfcc-tools (0.30.0+ds-1ubuntu5) over (0.30.0+ds-1ubuntu4) ...
111s Preparing to unpack .../07-bpftrace_0.21.2-2ubuntu2_ppc64el.deb ...
111s Unpacking bpftrace (0.21.2-2ubuntu2) over (0.21.2-2) ...
111s Preparing to unpack .../08-libjson-glib-1.0-common_1.10.0+ds-3_all.deb ...
111s Unpacking libjson-glib-1.0-common (1.10.0+ds-3) over (1.10.0+ds-2) ...
111s Preparing to unpack .../09-libjson-glib-1.0-0_1.10.0+ds-3_ppc64el.deb ...
111s Unpacking libjson-glib-1.0-0:ppc64el (1.10.0+ds-3) over (1.10.0+ds-2) ...
111s Preparing to unpack .../10-libutempter0_1.2.1-4_ppc64el.deb ...
111s Unpacking libutempter0:ppc64el (1.2.1-4) over (1.2.1-3build1) ...
111s Preparing to unpack .../11-pastebinit_1.7.1-1_all.deb ...
111s Unpacking pastebinit (1.7.1-1) over (1.7.0-1) ...
111s Preparing to unpack .../12-python3-systemd_235-1build5_ppc64el.deb ...
111s Unpacking python3-systemd (235-1build5) over (235-1build4) ...
111s Setting up libnewt0.52:ppc64el (0.52.24-2ubuntu4) ...
111s Setting up pastebinit (1.7.1-1) ...
111s Setting up python3-yaml (6.0.2-1build1) ...
111s Setting up python3-newt:ppc64el (0.52.24-2ubuntu4) ...
111s Setting up libutempter0:ppc64el (1.2.1-4) ...
111s Setting up whiptail (0.52.24-2ubuntu4) ...
111s Setting up libjson-glib-1.0-common (1.10.0+ds-3) ...
111s Setting up libbpfcc:ppc64el (0.30.0+ds-1ubuntu5) ...
111s Setting up python3-bpfcc (0.30.0+ds-1ubuntu5) ...
112s Setting up python3-systemd (235-1build5) ...
112s Setting up bpftrace (0.21.2-2ubuntu2) ...
112s Setting up libjson-glib-1.0-0:ppc64el (1.10.0+ds-3) ...
112s Setting up bpfcc-tools (0.30.0+ds-1ubuntu5) ...
112s Processing triggers for man-db (2.12.1-3) ...
114s Processing triggers for libc-bin (2.40-1ubuntu3) ...
114s Reading package lists...
114s Building dependency tree...
114s Reading state information...
115s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
115s Hit:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease
115s Hit:2 http://ftpmaster.internal/ubuntu plucky InRelease
115s Hit:3 http://ftpmaster.internal/ubuntu plucky-updates InRelease
115s Hit:4 http://ftpmaster.internal/ubuntu plucky-security InRelease
117s Reading package lists...
117s Reading package lists...
117s Building dependency tree...
117s Reading state information...
117s Calculating upgrade...
118s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
118s Reading package lists...
118s Building dependency tree...
118s Reading state information...
118s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
121s autopkgtest [16:47:33]: testbed running kernel: Linux 6.11.0-8-generic #8-Ubuntu SMP Mon Sep 16 13:49:23 UTC 2024
121s autopkgtest [16:47:33]: @@@@@@@@@@@@@@@@@@@@ apt-source idseq-bench
123s Get:1 http://ftpmaster.internal/ubuntu plucky/universe idseq-bench 0.0~git20210602.27fb6dc-1 (dsc) [2356 B]
123s Get:2 http://ftpmaster.internal/ubuntu plucky/universe idseq-bench 0.0~git20210602.27fb6dc-1 (tar) [17.3 kB]
123s Get:3 http://ftpmaster.internal/ubuntu plucky/universe idseq-bench 0.0~git20210602.27fb6dc-1 (diff) [4432 B]
123s gpgv: Signature made Mon Jan 17 12:05:35 2022 UTC
123s gpgv:                using RSA key 3E99A526F5DCC0CBBF1CEEA600BAE74B343369F1
123s gpgv:                issuer "nilesh@debian.org"
123s gpgv: Can't check signature: No public key
123s dpkg-source: warning: cannot verify inline signature for ./idseq-bench_0.0~git20210602.27fb6dc-1.dsc: no acceptable signature found
123s autopkgtest [16:47:35]: testing package idseq-bench version 0.0~git20210602.27fb6dc-1
124s autopkgtest [16:47:36]: build not needed
124s autopkgtest [16:47:36]: test run-unit-test: preparing testbed
125s Reading package lists...
126s Building dependency tree...
126s Reading state information...
126s Starting pkgProblemResolver with broken count: 0
126s Starting 2 pkgProblemResolver with broken count: 0
126s Done
126s The following additional packages will be installed:
126s   fontconfig-config fonts-dejavu-core fonts-dejavu-mono fonts-urw-base35
126s   idseq-bench insilicoseq libblas3 libcairo2 libdeflate0 libfontconfig1
126s   libfontenc1 libgfortran5 libgomp1 libgraphite2-3 libharfbuzz0b libhts3t64
126s   libhtscodecs2 libimagequant0 libjbig0 libjpeg-turbo8 libjpeg8 liblapack3
126s   liblbfgsb0 liblcms2-2 liblerc4 libopenjp2-7 libpixman-1-0 libraqm0
126s   libsharpyuv0 libtiff6 libwebp7 libwebpdemux2 libwebpmux3 libxcb-render0
126s   libxcb-shm0 libxrender1 ncbi-acc-download python3-all python3-biopython
126s   python3-cairo python3-decorator python3-freetype python3-joblib
126s   python3-numpy python3-pil python3-pysam python3-reportlab python3-rlpycairo
126s   python3-scipy python3-sklearn python3-sklearn-lib python3-smart-open
126s   python3-threadpoolctl python3-wrapt sgml-base w3c-sgml-lib x11-common
126s   xfonts-encodings xfonts-utils xml-core
126s Suggested packages:
126s   fonts-freefont-otf | fonts-freefont-ttf fonts-texgyre liblcms2-utils
126s   python3-tk bwa clustalo clustalw dialign dssp emboss fasttree mafft muscle3
126s   phylip phyml prank probcons python3-mysqldb python3-matplotlib python3-mmtf
126s   python3-rdflib python3-psycopg2 raxml samtools t-coffee wise
126s   python-joblib-doc gcc gfortran python-numpy-doc python3-dev python3-pytest
126s   python-pil-doc pdf-viewer python3-egenix-mxtexttools python-reportlab-doc
126s   rl-accel rl-renderpm python-scipy-doc python3-dap python-sklearn-doc
126s   ipython3 python3-azure python3-azure-storage sgml-base-doc debhelper
126s Recommended packages:
126s   python-biopython-doc ncbi-blast+ python3-pytest python3-simplejson
126s   python3-psutil python3-olefile fonts-dejavu-extra g++ | c++-compiler
126s   python3-matplotlib python3-boto3 python3-paramiko python3-zstandard
126s The following NEW packages will be installed:
126s   autopkgtest-satdep fontconfig-config fonts-dejavu-core fonts-dejavu-mono
126s   fonts-urw-base35 idseq-bench insilicoseq libblas3 libcairo2 libdeflate0
126s   libfontconfig1 libfontenc1 libgfortran5 libgomp1 libgraphite2-3
126s   libharfbuzz0b libhts3t64 libhtscodecs2 libimagequant0 libjbig0
126s   libjpeg-turbo8 libjpeg8 liblapack3 liblbfgsb0 liblcms2-2 liblerc4
126s   libopenjp2-7 libpixman-1-0 libraqm0 libsharpyuv0 libtiff6 libwebp7
126s   libwebpdemux2 libwebpmux3 libxcb-render0 libxcb-shm0 libxrender1
126s   ncbi-acc-download python3-all python3-biopython python3-cairo
126s   python3-decorator python3-freetype python3-joblib python3-numpy python3-pil
126s   python3-pysam python3-reportlab python3-rlpycairo python3-scipy
126s   python3-sklearn python3-sklearn-lib python3-smart-open python3-threadpoolctl
126s   python3-wrapt sgml-base w3c-sgml-lib x11-common xfonts-encodings
126s   xfonts-utils xml-core
126s 0 upgraded, 61 newly installed, 0 to remove and 0 not upgraded.
126s Need to get 62.6 MB/62.6 MB of archives.
126s After this operation, 261 MB of additional disk space will be used.
126s Get:1 /tmp/autopkgtest.Zj7oeJ/1-autopkgtest-satdep.deb autopkgtest-satdep ppc64el 0 [760 B]
126s Get:2 http://ftpmaster.internal/ubuntu plucky/main ppc64el sgml-base all 1.31 [11.4 kB]
127s Get:3 http://ftpmaster.internal/ubuntu plucky/main ppc64el fonts-dejavu-mono all 2.37-8 [502 kB]
127s Get:4 http://ftpmaster.internal/ubuntu plucky/main ppc64el fonts-dejavu-core all 2.37-8 [835 kB]
127s Get:5 http://ftpmaster.internal/ubuntu plucky/main ppc64el libfontenc1 ppc64el 1:1.1.8-1build1 [15.8 kB]
127s Get:6 http://ftpmaster.internal/ubuntu plucky/main ppc64el x11-common all 1:7.7+23ubuntu3 [21.7 kB]
127s Get:7 http://ftpmaster.internal/ubuntu plucky/main ppc64el xfonts-encodings all 1:1.0.5-0ubuntu2 [578 kB]
127s Get:8 http://ftpmaster.internal/ubuntu plucky/main ppc64el xfonts-utils ppc64el 1:7.7+7 [114 kB]
127s Get:9 http://ftpmaster.internal/ubuntu plucky/main ppc64el fonts-urw-base35 all 20200910-8 [11.0 MB]
127s Get:10 http://ftpmaster.internal/ubuntu plucky/main ppc64el fontconfig-config ppc64el 2.15.0-1.1ubuntu2 [37.4 kB]
127s Get:11 http://ftpmaster.internal/ubuntu plucky/main ppc64el libblas3 ppc64el 3.12.0-3build2 [222 kB]
127s Get:12 http://ftpmaster.internal/ubuntu plucky/main ppc64el libgfortran5 ppc64el 14.2.0-8ubuntu1 [571 kB]
127s Get:13 http://ftpmaster.internal/ubuntu plucky/main ppc64el liblapack3 ppc64el 3.12.0-3build2 [2806 kB]
127s Get:14 http://ftpmaster.internal/ubuntu plucky/main ppc64el python3-numpy ppc64el 1:1.26.4+ds-11build1 [4434 kB]
127s Get:15 http://ftpmaster.internal/ubuntu plucky/main ppc64el libgomp1 ppc64el 14.2.0-8ubuntu1 [161 kB]
127s Get:16 http://ftpmaster.internal/ubuntu plucky/main ppc64el libimagequant0 ppc64el 2.18.0-1build1 [43.2 kB]
127s Get:17 http://ftpmaster.internal/ubuntu plucky/main ppc64el libjpeg-turbo8 ppc64el 2.1.5-2ubuntu2 [219 kB]
127s Get:18 http://ftpmaster.internal/ubuntu plucky/main ppc64el libjpeg8 ppc64el 8c-2ubuntu11 [2148 B]
127s Get:19 http://ftpmaster.internal/ubuntu plucky/main ppc64el liblcms2-2 ppc64el 2.16-2 [243 kB]
127s Get:20 http://ftpmaster.internal/ubuntu plucky/main ppc64el libopenjp2-7 ppc64el 2.5.0-2ubuntu1 [246 kB]
127s Get:21 http://ftpmaster.internal/ubuntu plucky/main ppc64el libgraphite2-3 ppc64el 1.3.14-2ubuntu1 [84.6 kB]
127s Get:22 http://ftpmaster.internal/ubuntu plucky/main ppc64el libharfbuzz0b ppc64el 10.0.1-1 [596 kB]
127s Get:23 http://ftpmaster.internal/ubuntu plucky/main ppc64el libraqm0 ppc64el 0.10.1-1build1 [19.4 kB]
128s Get:24 http://ftpmaster.internal/ubuntu plucky/main ppc64el libdeflate0 ppc64el 1.22-1 [63.3 kB]
128s Get:25 http://ftpmaster.internal/ubuntu plucky/main ppc64el libjbig0 ppc64el 2.1-6.1ubuntu2 [35.9 kB]
128s Get:26 http://ftpmaster.internal/ubuntu plucky/main ppc64el liblerc4 ppc64el 4.0.0+ds-4ubuntu2 [270 kB]
128s Get:27 http://ftpmaster.internal/ubuntu plucky/main ppc64el libsharpyuv0 ppc64el 1.4.0-0.1 [22.0 kB]
128s Get:28 http://ftpmaster.internal/ubuntu plucky/main ppc64el libwebp7 ppc64el 1.4.0-0.1 [309 kB]
128s Get:29 http://ftpmaster.internal/ubuntu plucky/main ppc64el libtiff6 ppc64el 4.5.1+git230720-4ubuntu4 [272 kB]
128s Get:30 http://ftpmaster.internal/ubuntu plucky/main ppc64el libwebpdemux2 ppc64el 1.4.0-0.1 [14.1 kB]
128s Get:31 http://ftpmaster.internal/ubuntu plucky/main ppc64el libwebpmux3 ppc64el 1.4.0-0.1 [31.4 kB]
128s Get:32 http://ftpmaster.internal/ubuntu plucky/main ppc64el python3-pil ppc64el 10.4.0-1ubuntu1 [581 kB]
128s Get:33 http://ftpmaster.internal/ubuntu plucky/main ppc64el libfontconfig1 ppc64el 2.15.0-1.1ubuntu2 [190 kB]
128s Get:34 http://ftpmaster.internal/ubuntu plucky/main ppc64el libpixman-1-0 ppc64el 0.44.0-3 [334 kB]
128s Get:35 http://ftpmaster.internal/ubuntu plucky/main ppc64el libxcb-render0 ppc64el 1.17.0-2 [17.2 kB]
128s Get:36 http://ftpmaster.internal/ubuntu plucky/main ppc64el libxcb-shm0 ppc64el 1.17.0-2 [5980 B]
128s Get:37 http://ftpmaster.internal/ubuntu plucky/main ppc64el libxrender1 ppc64el 1:0.9.10-1.1build1 [23.1 kB]
128s Get:38 http://ftpmaster.internal/ubuntu plucky/main ppc64el libcairo2 ppc64el 1.18.2-2 [747 kB]
128s Get:39 http://ftpmaster.internal/ubuntu plucky/main ppc64el python3-cairo ppc64el 1.26.1-2 [129 kB]
128s Get:40 http://ftpmaster.internal/ubuntu plucky/universe ppc64el python3-freetype all 2.5.1-1 [92.3 kB]
128s Get:41 http://ftpmaster.internal/ubuntu plucky/universe ppc64el python3-rlpycairo all 0.3.0-3 [9130 B]
128s Get:42 http://ftpmaster.internal/ubuntu plucky/universe ppc64el python3-reportlab all 4.2.5-1 [1107 kB]
128s Get:43 http://ftpmaster.internal/ubuntu plucky/main ppc64el xml-core all 0.19 [20.3 kB]
128s Get:44 http://ftpmaster.internal/ubuntu plucky/universe ppc64el w3c-sgml-lib all 1.3-3 [280 kB]
128s Get:45 http://ftpmaster.internal/ubuntu plucky/universe ppc64el python3-biopython ppc64el 1.84+dfsg-4 [1738 kB]
128s Get:46 http://ftpmaster.internal/ubuntu plucky/universe ppc64el libhtscodecs2 ppc64el 1.6.1-1 [113 kB]
128s Get:47 http://ftpmaster.internal/ubuntu plucky/universe ppc64el libhts3t64 ppc64el 1.20+ds-1 [567 kB]
128s Get:48 http://ftpmaster.internal/ubuntu plucky/universe ppc64el python3-pysam ppc64el 0.22.1+ds-2 [3818 kB]
128s Get:49 http://ftpmaster.internal/ubuntu plucky/main ppc64el python3-decorator all 5.1.1-5 [10.1 kB]
128s Get:50 http://ftpmaster.internal/ubuntu plucky/universe ppc64el liblbfgsb0 ppc64el 3.0+dfsg.4-1build1 [33.0 kB]
128s Get:51 http://ftpmaster.internal/ubuntu plucky/universe ppc64el python3-scipy ppc64el 1.13.1-5 [18.3 MB]
129s Get:52 http://ftpmaster.internal/ubuntu plucky/universe ppc64el insilicoseq all 2.0.1-1 [4247 kB]
129s Get:53 http://ftpmaster.internal/ubuntu plucky/universe ppc64el ncbi-acc-download all 0.2.8-3 [13.3 kB]
129s Get:54 http://ftpmaster.internal/ubuntu plucky/universe ppc64el python3-joblib all 1.3.2-5 [206 kB]
129s Get:55 http://ftpmaster.internal/ubuntu plucky/universe ppc64el python3-threadpoolctl all 3.1.0-1 [21.3 kB]
129s Get:56 http://ftpmaster.internal/ubuntu plucky/universe ppc64el python3-sklearn-lib ppc64el 1.4.2+dfsg-6 [3838 kB]
129s Get:57 http://ftpmaster.internal/ubuntu plucky/universe ppc64el python3-sklearn all 1.4.2+dfsg-6 [2257 kB]
130s Get:58 http://ftpmaster.internal/ubuntu plucky/main ppc64el python3-wrapt ppc64el 1.15.0-3 [35.6 kB]
130s Get:59 http://ftpmaster.internal/ubuntu plucky/universe ppc64el python3-smart-open all 7.0.5-1 [89.9 kB]
130s Get:60 http://ftpmaster.internal/ubuntu plucky/universe ppc64el idseq-bench all 0.0~git20210602.27fb6dc-1 [24.7 kB]
130s Get:61 http://ftpmaster.internal/ubuntu plucky/main ppc64el python3-all ppc64el 3.12.6-0ubuntu1 [888 B]
130s Fetched 62.6 MB in 3s (19.3 MB/s)
130s Selecting previously unselected package sgml-base.
130s (Reading database ... 
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130s Preparing to unpack .../00-sgml-base_1.31_all.deb ...
130s Unpacking sgml-base (1.31) ...
130s Selecting previously unselected package fonts-dejavu-mono.
130s Preparing to unpack .../01-fonts-dejavu-mono_2.37-8_all.deb ...
130s Unpacking fonts-dejavu-mono (2.37-8) ...
130s Selecting previously unselected package fonts-dejavu-core.
130s Preparing to unpack .../02-fonts-dejavu-core_2.37-8_all.deb ...
130s Unpacking fonts-dejavu-core (2.37-8) ...
130s Selecting previously unselected package libfontenc1:ppc64el.
130s Preparing to unpack .../03-libfontenc1_1%3a1.1.8-1build1_ppc64el.deb ...
130s Unpacking libfontenc1:ppc64el (1:1.1.8-1build1) ...
130s Selecting previously unselected package x11-common.
130s Preparing to unpack .../04-x11-common_1%3a7.7+23ubuntu3_all.deb ...
130s Unpacking x11-common (1:7.7+23ubuntu3) ...
130s Selecting previously unselected package xfonts-encodings.
130s Preparing to unpack .../05-xfonts-encodings_1%3a1.0.5-0ubuntu2_all.deb ...
130s Unpacking xfonts-encodings (1:1.0.5-0ubuntu2) ...
130s Selecting previously unselected package xfonts-utils.
130s Preparing to unpack .../06-xfonts-utils_1%3a7.7+7_ppc64el.deb ...
130s Unpacking xfonts-utils (1:7.7+7) ...
130s Selecting previously unselected package fonts-urw-base35.
130s Preparing to unpack .../07-fonts-urw-base35_20200910-8_all.deb ...
131s Unpacking fonts-urw-base35 (20200910-8) ...
131s Selecting previously unselected package fontconfig-config.
131s Preparing to unpack .../08-fontconfig-config_2.15.0-1.1ubuntu2_ppc64el.deb ...
131s Unpacking fontconfig-config (2.15.0-1.1ubuntu2) ...
131s Selecting previously unselected package libblas3:ppc64el.
131s Preparing to unpack .../09-libblas3_3.12.0-3build2_ppc64el.deb ...
131s Unpacking libblas3:ppc64el (3.12.0-3build2) ...
131s Selecting previously unselected package libgfortran5:ppc64el.
131s Preparing to unpack .../10-libgfortran5_14.2.0-8ubuntu1_ppc64el.deb ...
131s Unpacking libgfortran5:ppc64el (14.2.0-8ubuntu1) ...
131s Selecting previously unselected package liblapack3:ppc64el.
131s Preparing to unpack .../11-liblapack3_3.12.0-3build2_ppc64el.deb ...
131s Unpacking liblapack3:ppc64el (3.12.0-3build2) ...
131s Selecting previously unselected package python3-numpy.
131s Preparing to unpack .../12-python3-numpy_1%3a1.26.4+ds-11build1_ppc64el.deb ...
131s Unpacking python3-numpy (1:1.26.4+ds-11build1) ...
131s Selecting previously unselected package libgomp1:ppc64el.
131s Preparing to unpack .../13-libgomp1_14.2.0-8ubuntu1_ppc64el.deb ...
131s Unpacking libgomp1:ppc64el (14.2.0-8ubuntu1) ...
131s Selecting previously unselected package libimagequant0:ppc64el.
131s Preparing to unpack .../14-libimagequant0_2.18.0-1build1_ppc64el.deb ...
131s Unpacking libimagequant0:ppc64el (2.18.0-1build1) ...
131s Selecting previously unselected package libjpeg-turbo8:ppc64el.
131s Preparing to unpack .../15-libjpeg-turbo8_2.1.5-2ubuntu2_ppc64el.deb ...
131s Unpacking libjpeg-turbo8:ppc64el (2.1.5-2ubuntu2) ...
132s Selecting previously unselected package libjpeg8:ppc64el.
132s Preparing to unpack .../16-libjpeg8_8c-2ubuntu11_ppc64el.deb ...
132s Unpacking libjpeg8:ppc64el (8c-2ubuntu11) ...
132s Selecting previously unselected package liblcms2-2:ppc64el.
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132s Unpacking liblcms2-2:ppc64el (2.16-2) ...
132s Selecting previously unselected package libopenjp2-7:ppc64el.
132s Preparing to unpack .../18-libopenjp2-7_2.5.0-2ubuntu1_ppc64el.deb ...
132s Unpacking libopenjp2-7:ppc64el (2.5.0-2ubuntu1) ...
132s Selecting previously unselected package libgraphite2-3:ppc64el.
132s Preparing to unpack .../19-libgraphite2-3_1.3.14-2ubuntu1_ppc64el.deb ...
132s Unpacking libgraphite2-3:ppc64el (1.3.14-2ubuntu1) ...
132s Selecting previously unselected package libharfbuzz0b:ppc64el.
132s Preparing to unpack .../20-libharfbuzz0b_10.0.1-1_ppc64el.deb ...
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132s Selecting previously unselected package libraqm0:ppc64el.
132s Preparing to unpack .../21-libraqm0_0.10.1-1build1_ppc64el.deb ...
132s Unpacking libraqm0:ppc64el (0.10.1-1build1) ...
132s Selecting previously unselected package libdeflate0:ppc64el.
132s Preparing to unpack .../22-libdeflate0_1.22-1_ppc64el.deb ...
132s Unpacking libdeflate0:ppc64el (1.22-1) ...
132s Selecting previously unselected package libjbig0:ppc64el.
132s Preparing to unpack .../23-libjbig0_2.1-6.1ubuntu2_ppc64el.deb ...
132s Unpacking libjbig0:ppc64el (2.1-6.1ubuntu2) ...
132s Selecting previously unselected package liblerc4:ppc64el.
132s Preparing to unpack .../24-liblerc4_4.0.0+ds-4ubuntu2_ppc64el.deb ...
132s Unpacking liblerc4:ppc64el (4.0.0+ds-4ubuntu2) ...
132s Selecting previously unselected package libsharpyuv0:ppc64el.
132s Preparing to unpack .../25-libsharpyuv0_1.4.0-0.1_ppc64el.deb ...
132s Unpacking libsharpyuv0:ppc64el (1.4.0-0.1) ...
132s Selecting previously unselected package libwebp7:ppc64el.
132s Preparing to unpack .../26-libwebp7_1.4.0-0.1_ppc64el.deb ...
132s Unpacking libwebp7:ppc64el (1.4.0-0.1) ...
132s Selecting previously unselected package libtiff6:ppc64el.
132s Preparing to unpack .../27-libtiff6_4.5.1+git230720-4ubuntu4_ppc64el.deb ...
132s Unpacking libtiff6:ppc64el (4.5.1+git230720-4ubuntu4) ...
132s Selecting previously unselected package libwebpdemux2:ppc64el.
132s Preparing to unpack .../28-libwebpdemux2_1.4.0-0.1_ppc64el.deb ...
132s Unpacking libwebpdemux2:ppc64el (1.4.0-0.1) ...
132s Selecting previously unselected package libwebpmux3:ppc64el.
132s Preparing to unpack .../29-libwebpmux3_1.4.0-0.1_ppc64el.deb ...
132s Unpacking libwebpmux3:ppc64el (1.4.0-0.1) ...
132s Selecting previously unselected package python3-pil:ppc64el.
132s Preparing to unpack .../30-python3-pil_10.4.0-1ubuntu1_ppc64el.deb ...
132s Unpacking python3-pil:ppc64el (10.4.0-1ubuntu1) ...
132s Selecting previously unselected package libfontconfig1:ppc64el.
132s Preparing to unpack .../31-libfontconfig1_2.15.0-1.1ubuntu2_ppc64el.deb ...
132s Unpacking libfontconfig1:ppc64el (2.15.0-1.1ubuntu2) ...
132s Selecting previously unselected package libpixman-1-0:ppc64el.
132s Preparing to unpack .../32-libpixman-1-0_0.44.0-3_ppc64el.deb ...
132s Unpacking libpixman-1-0:ppc64el (0.44.0-3) ...
132s Selecting previously unselected package libxcb-render0:ppc64el.
132s Preparing to unpack .../33-libxcb-render0_1.17.0-2_ppc64el.deb ...
132s Unpacking libxcb-render0:ppc64el (1.17.0-2) ...
132s Selecting previously unselected package libxcb-shm0:ppc64el.
132s Preparing to unpack .../34-libxcb-shm0_1.17.0-2_ppc64el.deb ...
132s Unpacking libxcb-shm0:ppc64el (1.17.0-2) ...
132s Selecting previously unselected package libxrender1:ppc64el.
132s Preparing to unpack .../35-libxrender1_1%3a0.9.10-1.1build1_ppc64el.deb ...
132s Unpacking libxrender1:ppc64el (1:0.9.10-1.1build1) ...
132s Selecting previously unselected package libcairo2:ppc64el.
132s Preparing to unpack .../36-libcairo2_1.18.2-2_ppc64el.deb ...
132s Unpacking libcairo2:ppc64el (1.18.2-2) ...
132s Selecting previously unselected package python3-cairo.
132s Preparing to unpack .../37-python3-cairo_1.26.1-2_ppc64el.deb ...
132s Unpacking python3-cairo (1.26.1-2) ...
132s Selecting previously unselected package python3-freetype.
132s Preparing to unpack .../38-python3-freetype_2.5.1-1_all.deb ...
132s Unpacking python3-freetype (2.5.1-1) ...
132s Selecting previously unselected package python3-rlpycairo.
132s Preparing to unpack .../39-python3-rlpycairo_0.3.0-3_all.deb ...
132s Unpacking python3-rlpycairo (0.3.0-3) ...
132s Selecting previously unselected package python3-reportlab.
132s Preparing to unpack .../40-python3-reportlab_4.2.5-1_all.deb ...
132s Unpacking python3-reportlab (4.2.5-1) ...
132s Selecting previously unselected package xml-core.
132s Preparing to unpack .../41-xml-core_0.19_all.deb ...
132s Unpacking xml-core (0.19) ...
132s Selecting previously unselected package w3c-sgml-lib.
132s Preparing to unpack .../42-w3c-sgml-lib_1.3-3_all.deb ...
132s Unpacking w3c-sgml-lib (1.3-3) ...
132s Selecting previously unselected package python3-biopython.
132s Preparing to unpack .../43-python3-biopython_1.84+dfsg-4_ppc64el.deb ...
132s Unpacking python3-biopython (1.84+dfsg-4) ...
133s Selecting previously unselected package libhtscodecs2:ppc64el.
133s Preparing to unpack .../44-libhtscodecs2_1.6.1-1_ppc64el.deb ...
133s Unpacking libhtscodecs2:ppc64el (1.6.1-1) ...
133s Selecting previously unselected package libhts3t64:ppc64el.
133s Preparing to unpack .../45-libhts3t64_1.20+ds-1_ppc64el.deb ...
133s Unpacking libhts3t64:ppc64el (1.20+ds-1) ...
133s Selecting previously unselected package python3-pysam.
133s Preparing to unpack .../46-python3-pysam_0.22.1+ds-2_ppc64el.deb ...
133s Unpacking python3-pysam (0.22.1+ds-2) ...
133s Selecting previously unselected package python3-decorator.
133s Preparing to unpack .../47-python3-decorator_5.1.1-5_all.deb ...
133s Unpacking python3-decorator (5.1.1-5) ...
133s Selecting previously unselected package liblbfgsb0:ppc64el.
133s Preparing to unpack .../48-liblbfgsb0_3.0+dfsg.4-1build1_ppc64el.deb ...
133s Unpacking liblbfgsb0:ppc64el (3.0+dfsg.4-1build1) ...
133s Selecting previously unselected package python3-scipy.
133s Preparing to unpack .../49-python3-scipy_1.13.1-5_ppc64el.deb ...
133s Unpacking python3-scipy (1.13.1-5) ...
134s Selecting previously unselected package insilicoseq.
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134s Unpacking insilicoseq (2.0.1-1) ...
134s Selecting previously unselected package ncbi-acc-download.
134s Preparing to unpack .../51-ncbi-acc-download_0.2.8-3_all.deb ...
134s Unpacking ncbi-acc-download (0.2.8-3) ...
134s Selecting previously unselected package python3-joblib.
134s Preparing to unpack .../52-python3-joblib_1.3.2-5_all.deb ...
134s Unpacking python3-joblib (1.3.2-5) ...
134s Selecting previously unselected package python3-threadpoolctl.
134s Preparing to unpack .../53-python3-threadpoolctl_3.1.0-1_all.deb ...
134s Unpacking python3-threadpoolctl (3.1.0-1) ...
134s Selecting previously unselected package python3-sklearn-lib:ppc64el.
134s Preparing to unpack .../54-python3-sklearn-lib_1.4.2+dfsg-6_ppc64el.deb ...
134s Unpacking python3-sklearn-lib:ppc64el (1.4.2+dfsg-6) ...
134s Selecting previously unselected package python3-sklearn.
134s Preparing to unpack .../55-python3-sklearn_1.4.2+dfsg-6_all.deb ...
134s Unpacking python3-sklearn (1.4.2+dfsg-6) ...
134s Selecting previously unselected package python3-wrapt.
134s Preparing to unpack .../56-python3-wrapt_1.15.0-3_ppc64el.deb ...
134s Unpacking python3-wrapt (1.15.0-3) ...
134s Selecting previously unselected package python3-smart-open.
134s Preparing to unpack .../57-python3-smart-open_7.0.5-1_all.deb ...
134s Unpacking python3-smart-open (7.0.5-1) ...
134s Selecting previously unselected package idseq-bench.
134s Preparing to unpack .../58-idseq-bench_0.0~git20210602.27fb6dc-1_all.deb ...
134s Unpacking idseq-bench (0.0~git20210602.27fb6dc-1) ...
134s Selecting previously unselected package python3-all.
134s Preparing to unpack .../59-python3-all_3.12.6-0ubuntu1_ppc64el.deb ...
134s Unpacking python3-all (3.12.6-0ubuntu1) ...
134s Selecting previously unselected package autopkgtest-satdep.
134s Preparing to unpack .../60-1-autopkgtest-satdep.deb ...
134s Unpacking autopkgtest-satdep (0) ...
134s Setting up libhtscodecs2:ppc64el (1.6.1-1) ...
134s Setting up libgraphite2-3:ppc64el (1.3.14-2ubuntu1) ...
134s Setting up liblcms2-2:ppc64el (2.16-2) ...
134s Setting up libpixman-1-0:ppc64el (0.44.0-3) ...
134s Setting up libsharpyuv0:ppc64el (1.4.0-0.1) ...
134s Setting up liblerc4:ppc64el (4.0.0+ds-4ubuntu2) ...
134s Setting up libxrender1:ppc64el (1:0.9.10-1.1build1) ...
134s Setting up python3-joblib (1.3.2-5) ...
135s Setting up libxcb-render0:ppc64el (1.17.0-2) ...
135s Setting up python3-threadpoolctl (3.1.0-1) ...
135s Setting up x11-common (1:7.7+23ubuntu3) ...
135s Setting up libdeflate0:ppc64el (1.22-1) ...
135s Setting up python3-all (3.12.6-0ubuntu1) ...
135s Setting up libxcb-shm0:ppc64el (1.17.0-2) ...
135s Setting up libgomp1:ppc64el (14.2.0-8ubuntu1) ...
135s Setting up python3-freetype (2.5.1-1) ...
136s Setting up libjbig0:ppc64el (2.1-6.1ubuntu2) ...
136s Setting up python3-decorator (5.1.1-5) ...
136s Setting up libfontenc1:ppc64el (1:1.1.8-1build1) ...
136s Setting up libblas3:ppc64el (3.12.0-3build2) ...
136s update-alternatives: using /usr/lib/powerpc64le-linux-gnu/blas/libblas.so.3 to provide /usr/lib/powerpc64le-linux-gnu/libblas.so.3 (libblas.so.3-powerpc64le-linux-gnu) in auto mode
136s Setting up xfonts-encodings (1:1.0.5-0ubuntu2) ...
136s Setting up libimagequant0:ppc64el (2.18.0-1build1) ...
136s Setting up fonts-dejavu-mono (2.37-8) ...
136s Setting up python3-wrapt (1.15.0-3) ...
136s Setting up fonts-dejavu-core (2.37-8) ...
136s Setting up libjpeg-turbo8:ppc64el (2.1.5-2ubuntu2) ...
136s Setting up libgfortran5:ppc64el (14.2.0-8ubuntu1) ...
136s Setting up libwebp7:ppc64el (1.4.0-0.1) ...
136s Setting up libhts3t64:ppc64el (1.20+ds-1) ...
136s Setting up libopenjp2-7:ppc64el (2.5.0-2ubuntu1) ...
136s Setting up ncbi-acc-download (0.2.8-3) ...
136s Setting up libharfbuzz0b:ppc64el (10.0.1-1) ...
136s Setting up sgml-base (1.31) ...
136s Setting up libwebpmux3:ppc64el (1.4.0-0.1) ...
136s Setting up libjpeg8:ppc64el (8c-2ubuntu11) ...
136s Setting up liblapack3:ppc64el (3.12.0-3build2) ...
136s update-alternatives: using /usr/lib/powerpc64le-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/powerpc64le-linux-gnu/liblapack.so.3 (liblapack.so.3-powerpc64le-linux-gnu) in auto mode
136s Setting up python3-pysam (0.22.1+ds-2) ...
136s Setting up python3-smart-open (7.0.5-1) ...
136s Setting up fontconfig-config (2.15.0-1.1ubuntu2) ...
137s Setting up libwebpdemux2:ppc64el (1.4.0-0.1) ...
137s Setting up xfonts-utils (1:7.7+7) ...
137s Setting up libraqm0:ppc64el (0.10.1-1build1) ...
137s Setting up python3-numpy (1:1.26.4+ds-11build1) ...
139s Setting up libtiff6:ppc64el (4.5.1+git230720-4ubuntu4) ...
139s Setting up xml-core (0.19) ...
140s Setting up libfontconfig1:ppc64el (2.15.0-1.1ubuntu2) ...
140s Setting up liblbfgsb0:ppc64el (3.0+dfsg.4-1build1) ...
140s Setting up python3-scipy (1.13.1-5) ...
144s Setting up python3-sklearn-lib:ppc64el (1.4.2+dfsg-6) ...
144s Setting up fonts-urw-base35 (20200910-8) ...
144s Setting up libcairo2:ppc64el (1.18.2-2) ...
144s Setting up python3-pil:ppc64el (10.4.0-1ubuntu1) ...
145s Setting up python3-sklearn (1.4.2+dfsg-6) ...
147s Setting up python3-cairo (1.26.1-2) ...
148s Setting up python3-rlpycairo (0.3.0-3) ...
148s Setting up python3-reportlab (4.2.5-1) ...
149s Processing triggers for libc-bin (2.40-1ubuntu3) ...
149s Processing triggers for man-db (2.12.1-3) ...
150s Processing triggers for sgml-base (1.31) ...
150s Setting up w3c-sgml-lib (1.3-3) ...
189s Setting up python3-biopython (1.84+dfsg-4) ...
191s Setting up insilicoseq (2.0.1-1) ...
191s Setting up idseq-bench (0.0~git20210602.27fb6dc-1) ...
191s Setting up autopkgtest-satdep (0) ...
195s (Reading database ... 80093 files and directories currently installed.)
195s Removing autopkgtest-satdep (0) ...
196s autopkgtest [16:48:48]: test run-unit-test: [-----------------------
499s INFO:iss.app:Starting iss generate
499s INFO:iss.generator:Using kde ErrorModel
499s INFO:iss.util:Stitching input files together
500s INFO:iss.generator:Using abundance file:norg_6__nacc_27__uniform_weight_per_organism__hiseq_reads__v0.2.6/tmp_4888_abundance.txt
500s INFO:iss.app:Using 2 cpus for read generation
500s INFO:iss.app:Generating 60000 reads
559s INFO:iss.util:Stitching input files together
559s INFO:iss.util:Stitching input files together
559s INFO:iss.util:Cleaning up
559s INFO:iss.app:Read generation complete
570s Generating IDseq benchmark data...
570s 'cd downloads; ncbi-acc-download --format fasta NC_016845.1 -e all'
570s 'cat downloads/NC_016845.1.fa > downloads/bateria__klebsiella_pneumoniae_HS11286__1125630.fasta'
570s "grep -v '^>' downloads/bateria__klebsiella_pneumoniae_HS11286__1125630.fasta | tr -d '\n' | wc > bateria__klebsiella_pneumoniae_HS11286__1125630.size"
570s Genome bateria__klebsiella_pneumoniae_HS11286__1125630 size 5333942 bases.
570s 'cd downloads; ncbi-acc-download --format fasta NC_007194.1 -e all'
570s 'cd downloads; ncbi-acc-download --format fasta NC_007195.1 -e all'
570s 'cd downloads; ncbi-acc-download --format fasta NC_007196.1 -e all'
570s 'cd downloads; ncbi-acc-download --format fasta NC_007197.1 -e all'
570s 'cd downloads; ncbi-acc-download --format fasta NC_007198.1 -e all'
570s 'cd downloads; ncbi-acc-download --format fasta NC_007199.1 -e all'
570s 'cd downloads; ncbi-acc-download --format fasta NC_007200.1 -e all'
570s 'cd downloads; ncbi-acc-download --format fasta NC_007201.1 -e all'
570s 'cat downloads/NC_007194.1.fa downloads/NC_007195.1.fa downloads/NC_007196.1.fa downloads/NC_007197.1.fa downloads/NC_007198.1.fa downloads/NC_007199.1.fa downloads/NC_007200.1.fa downloads/NC_007201.1.fa > downloads/fungi__aspergillus_fumigatus__330879.fasta'
570s "grep -v '^>' downloads/fungi__aspergillus_fumigatus__330879.fasta | tr -d '\n' | wc > fungi__aspergillus_fumigatus__330879.size"
570s Genome fungi__aspergillus_fumigatus__330879 size 29384958 bases.
570s 'cd downloads; ncbi-acc-download --format fasta MG148341.1 -e all'
570s 'cat downloads/MG148341.1.fa > downloads/viruses__rhinovirus_c__463676.fasta'
570s "grep -v '^>' downloads/viruses__rhinovirus_c__463676.fasta | tr -d '\n' | wc > viruses__rhinovirus_c__463676.size"
570s Genome viruses__rhinovirus_c__463676 size 7056 bases.
570s 'cd downloads; ncbi-acc-download --format fasta MG049915.1 -e all'
570s 'cat downloads/MG049915.1.fa > downloads/viruses__chikungunya__37124.fasta'
570s "grep -v '^>' downloads/viruses__chikungunya__37124.fasta | tr -d '\n' | wc > viruses__chikungunya__37124.size"
570s Genome viruses__chikungunya__37124 size 11604 bases.
570s 'cd downloads; ncbi-acc-download --format fasta NC_007795.1 -e all'
570s 'cat downloads/NC_007795.1.fa > downloads/bateria__staphylococcus_aureus__93061.fasta'
570s "grep -v '^>' downloads/bateria__staphylococcus_aureus__93061.fasta | tr -d '\n' | wc > bateria__staphylococcus_aureus__93061.size"
570s Genome bateria__staphylococcus_aureus__93061 size 2821361 bases.
570s 'cd downloads; ncbi-acc-download --format fasta NC_004325.2 -e all'
570s 'cd downloads; ncbi-acc-download --format fasta NC_037280.1 -e all'
570s 'cd downloads; ncbi-acc-download --format fasta NC_000521.4 -e all'
570s 'cd downloads; ncbi-acc-download --format fasta NC_004318.2 -e all'
570s 'cd downloads; ncbi-acc-download --format fasta NC_004326.2 -e all'
570s 'cd downloads; ncbi-acc-download --format fasta NC_004327.3 -e all'
570s 'cd downloads; ncbi-acc-download --format fasta NC_004328.3 -e all'
570s 'cd downloads; ncbi-acc-download --format fasta NC_004329.3 -e all'
570s 'cd downloads; ncbi-acc-download --format fasta NC_004330.2 -e all'
570s 'cd downloads; ncbi-acc-download --format fasta NC_037281.1 -e all'
570s 'cd downloads; ncbi-acc-download --format fasta NC_037282.1 -e all'
570s 'cd downloads; ncbi-acc-download --format fasta NC_037284.1 -e all'
570s 'cd downloads; ncbi-acc-download --format fasta NC_004331.3 -e all'
570s 'cd downloads; ncbi-acc-download --format fasta NC_037283.1 -e all'
570s 'cd downloads; ncbi-acc-download --format fasta NC_036769.1 -e all'
570s 'cat downloads/NC_004325.2.fa downloads/NC_037280.1.fa downloads/NC_000521.4.fa downloads/NC_004318.2.fa downloads/NC_004326.2.fa downloads/NC_004327.3.fa downloads/NC_004328.3.fa downloads/NC_004329.3.fa downloads/NC_004330.2.fa downloads/NC_037281.1.fa downloads/NC_037282.1.fa downloads/NC_037284.1.fa downloads/NC_004331.3.fa downloads/NC_037283.1.fa downloads/NC_036769.1.fa > downloads/protista__plasmodium_falciuparum__36329.fasta'
570s "grep -v '^>' downloads/protista__plasmodium_falciuparum__36329.fasta | tr -d '\n' | wc > protista__plasmodium_falciuparum__36329.size"
570s Genome protista__plasmodium_falciuparum__36329 size 23326872 bases.
570s Initializing and downloading genomes...
570s GENERATING norg_6__nacc_27__uniform_weight_per_organism__hiseq_reads__v0.2.6
570s 'iss --version > iss_version.txt'
570s 'cat downloads/bateria__klebsiella_pneumoniae_HS11286__1125630.fasta downloads/fungi__aspergillus_fumigatus__330879.fasta downloads/viruses__rhinovirus_c__463676.fasta downloads/viruses__chikungunya__37124.fasta downloads/bateria__staphylococcus_aureus__93061.fasta downloads/protista__plasmodium_falciuparum__36329.fasta > norg_6__nacc_27__uniform_weight_per_organism__hiseq_reads__v0.2.6/tmp_4888_genomes.fasta'
570s 'iss generate --n_reads 60000 --genomes norg_6__nacc_27__uniform_weight_per_organism__hiseq_reads__v0.2.6/tmp_4888_genomes.fasta --model hiseq --abundance_file norg_6__nacc_27__uniform_weight_per_organism__hiseq_reads__v0.2.6/tmp_4888_abundance.txt --gc_bias --output norg_6__nacc_27__uniform_weight_per_organism__hiseq_reads__v0.2.6/tmp_4888 --cpus 2'
570s *** 100.0 percent done, 1.2 minutes elapsed, 0.0 minutes remaining, ETA 16:55:02 ***
570s 
570s autopkgtest [16:55:02]: test run-unit-test: -----------------------]
571s autopkgtest [16:55:03]: test run-unit-test:  - - - - - - - - - - results - - - - - - - - - -
571s run-unit-test        PASS
571s autopkgtest [16:55:03]: @@@@@@@@@@@@@@@@@@@@ summary
571s run-unit-test        PASS
577s nova [W] Using flock in prodstack6-ppc64el
577s Creating nova instance adt-plucky-ppc64el-idseq-bench-20241114-164532-juju-7f2275-prod-proposed-migration-environment-15-aa78787a-7161-4e04-8733-1b4a694aa4d3 from image adt/ubuntu-plucky-ppc64el-server-20241113.img (UUID 0c5715b6-5cca-4485-b8bf-b85dfd917a5f)...