0s autopkgtest [21:19:04]: starting date and time: 2024-11-29 21:19:04+0000
  0s autopkgtest [21:19:04]: git checkout: be626eda Fix armhf LXD image generation for plucky
  0s autopkgtest [21:19:04]: host juju-7f2275-prod-proposed-migration-environment-20; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.hv2901ss/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:openssl --apt-upgrade htslib --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=openssl/3.4.0-1ubuntu1 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest-ppc64el --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-20@bos03-ppc64el-8.secgroup --name adt-plucky-ppc64el-htslib-20241129-211904-juju-7f2275-prod-proposed-migration-environment-20-0ca74b99-ef6e-43d6-9706-6668d4f93da1 --image adt/ubuntu-plucky-ppc64el-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-20 --net-id=net_prod-proposed-migration-ppc64el -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,keyserver.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/
712s nova [W] Using flock in prodstack6-ppc64el
712s Creating nova instance adt-plucky-ppc64el-htslib-20241129-211904-juju-7f2275-prod-proposed-migration-environment-20-0ca74b99-ef6e-43d6-9706-6668d4f93da1 from image adt/ubuntu-plucky-ppc64el-server-20241129.img (UUID 4310160b-3912-43a6-9b37-357145536086)...
712s nova [E] nova boot failed (attempt #0):
712s nova [E] DEBUG (extension:189) found extension EntryPoint.parse('v1password = swiftclient.authv1:PasswordLoader')
712s DEBUG (extension:189) found extension EntryPoint.parse('noauth = cinderclient.contrib.noauth:CinderNoAuthLoader')
712s DEBUG (extension:189) found extension EntryPoint.parse('admin_token = keystoneauth1.loading._plugins.admin_token:AdminToken')
712s DEBUG (extension:189) found extension EntryPoint.parse('none = keystoneauth1.loading._plugins.noauth:NoAuth')
712s DEBUG (extension:189) found extension EntryPoint.parse('password = keystoneauth1.loading._plugins.identity.generic:Password')
712s DEBUG (extension:189) found extension EntryPoint.parse('token = keystoneauth1.loading._plugins.identity.generic:Token')
712s DEBUG (extension:189) found extension EntryPoint.parse('v2password = keystoneauth1.loading._plugins.identity.v2:Password')
712s DEBUG (extension:189) found extension EntryPoint.parse('v2token = keystoneauth1.loading._plugins.identity.v2:Token')
712s DEBUG (extension:189) found extension EntryPoint.parse('v3adfspassword = keystoneauth1.extras._saml2._loading:ADFSPassword')
712s DEBUG (extension:189) found extension EntryPoint.parse('v3applicationcredential = keystoneauth1.loading._plugins.identity.v3:ApplicationCredential')
712s DEBUG (extension:189) found extension EntryPoint.parse('v3fedkerb = keystoneauth1.extras.kerberos._loading:MappedKerberos')
712s DEBUG (extension:189) found extension EntryPoint.parse('v3kerberos = keystoneauth1.extras.kerberos._loading:Kerberos')
712s DEBUG (extension:189) found extension EntryPoint.parse('v3multifactor = keystoneauth1.loading._plugins.identity.v3:MultiFactor')
712s DEBUG (extension:189) found extension EntryPoint.parse('v3oauth1 = keystoneauth1.extras.oauth1._loading:V3OAuth1')
712s DEBUG (extension:189) found extension EntryPoint.parse('v3oidcaccesstoken = keystoneauth1.loading._plugins.identity.v3:OpenIDConnectAccessToken')
712s DEBUG (extension:189) found extension EntryPoint.parse('v3oidcauthcode = keystoneauth1.loading._plugins.identity.v3:OpenIDConnectAuthorizationCode')
712s DEBUG (extension:189) found extension EntryPoint.parse('v3oidcclientcredentials = keystoneauth1.loading._plugins.identity.v3:OpenIDConnectClientCredentials')
712s DEBUG (extension:189) found extension EntryPoint.parse('v3oidcpassword = keystoneauth1.loading._plugins.identity.v3:OpenIDConnectPassword')
712s DEBUG (extension:189) found extension EntryPoint.parse('v3password = keystoneauth1.loading._plugins.identity.v3:Password')
712s DEBUG (extension:189) found extension EntryPoint.parse('v3samlpassword = keystoneauth1.extras._saml2._loading:Saml2Password')
712s DEBUG (extension:189) found extension EntryPoint.parse('v3token = keystoneauth1.loading._plugins.identity.v3:Token')
712s DEBUG (extension:189) found extension EntryPoint.parse('v3tokenlessauth = keystoneauth1.loading._plugins.identity.v3:TokenlessAuth')
712s DEBUG (extension:189) found extension EntryPoint.parse('v3totp = keystoneauth1.loading._plugins.identity.v3:TOTP')
712s DEBUG (session:517) REQ: curl -g -i -X GET https://keystone.ps6.canonical.com:5000/v3 -H "Accept: application/json" -H "User-Agent: nova keystoneauth1/4.0.0 python-requests/2.22.0 CPython/3.8.10"
712s DEBUG (connectionpool:962) Starting new HTTPS connection (1): keystone.ps6.canonical.com:5000
712s DEBUG (connectionpool:429) https://keystone.ps6.canonical.com:5000 "GET /v3 HTTP/1.1" 200 267
712s DEBUG (session:548) RESP: [200] Connection: Keep-Alive Content-Length: 267 Content-Type: application/json Date: Fri, 29 Nov 2024 21:19:52 GMT Keep-Alive: timeout=75, max=1000 Server: Apache/2.4.52 (Ubuntu) Vary: X-Auth-Token x-openstack-request-id: req-4dfb48a7-829a-4988-a91f-793a35ee2217
712s DEBUG (session:580) RESP BODY: {"version": {"id": "v3.14", "status": "stable", "updated": "2020-04-07T00:00:00Z", "links": [{"rel": "self", "href": "https://keystone.ps6.canonical.com:5000/v3/"}], "media-types": [{"base": "application/json", "type": "application/vnd.openstack.identity-v3+json"}]}}
712s DEBUG (session:946) GET call to https://keystone.ps6.canonical.com:5000/v3 used request id req-4dfb48a7-829a-4988-a91f-793a35ee2217
712s DEBUG (base:182) Making authentication request to https://keystone.ps6.canonical.com:5000/v3/auth/tokens
712s DEBUG (connectionpool:429) https://keystone.ps6.canonical.com:5000 "POST /v3/auth/tokens HTTP/1.1" 201 12525
712s DEBUG (base:187) {"token": {"methods": ["password"], "user": {"domain": {"id": "default", "name": "Default"}, "id": "c871debdeffd4cb8b69ce618fc4aa361", "name": "prod-proposed-migration-ppc64el", "password_expires_at": null}, "audit_ids": ["PbT-58i2R9CNyCjJ5vClrA"], "expires_at": "2024-11-30T21:19:52.000000Z", "issued_at": "2024-11-29T21:19:52.000000Z", "project": {"domain": {"id": "default", "name": "Default"}, "id": "623df63b80274c21bc79a0c35e68d615", "name": "prod-proposed-migration-ppc64el_project"}, "is_domain": false, "roles": [{"id": "80674fb26dab46e9a6bd57e7f8193360", "name": "load-balancer_member"}, {"id": "86bf3043974746c2bf52c2a9f362f986", "name": "reader"}, {"id": "15cf997650e345b7b21c02b5cdb7d84a", "name": "member"}], "is_admin_project": false, "catalog": [{"endpoints": [{"id": "213cdf38198c4581bd5b7d6d0836923b", "interface": "internal", "region_id": "prodstack6", "url": "https://radosgw-internal.ps6.canonical.com:443/", "region": "prodstack6"}, {"id": "67061eee26944a1a8009f9d07be19738", "interface": "public", "region_id": "prodstack6", "url": "https://radosgw.ps6.canonical.com:443/", "region": "prodstack6"}, {"id": "fc88c52c749a47d08a24a2c7efbde01b", "interface": "admin", "region_id": "prodstack6", "url": "https://radosgw-admin.ps6.canonical.com:443/", "region": "prodstack6"}], "id": "06e4714942634054bf9aa11715312b4e", "type": "s3", "name": "s3"}, {"endpoints": [{"id": "8aa44c94b63746bd9b37f1008ad55fa8", "interface": "admin", "region_id": "prodstack6", "url": "https://aodh-admin.ps6.canonical.com:8042", "region": "prodstack6"}, {"id": "92cf08a80a0242ebbca8ec893cf332b1", "interface": "public", "region_id": "prodstack6", "url": "https://aodh.ps6.canonical.com:8042", "region": "prodstack6"}, {"id": "d8139c6e11ae4edcb78981c12bd53212", "interface": "internal", "region_id": "prodstack6", "url": "https://aodh-internal.ps6.canonical.com:8042", "region": "prodstack6"}], "id": "2fb939b0b969435c8f0c5fa4edb4de94", "type": "alarming", "name": "aodh"}, {"endpoints": [{"id": "a49fcc80e658411885f88cdd8432a571", "interface": "internal", "region_id": "prodstack6", "url": "https://heat-internal.ps6.canonical.com:8000/v1", "region": "prodstack6"}, {"id": "b23866fddba8415885b06c064c34b94b", "interface": "public", "region_id": "prodstack6", "url": "https://heat.ps6.canonical.com:8000/v1", "region": "prodstack6"}, {"id": "f84ae55197f94b8392a678f35c82ca26", "interface": "admin", "region_id": "prodstack6", "url": "https://heat-admin.ps6.canonical.com:8000/v1", "region": "prodstack6"}], "id": "3d4b59f7dab644b2b527e8e96b697545", "type": "cloudformation", "name": "heat-cfn"}, {"endpoints": [{"id": "2e0143334c6241169f45f1c11970c6bc", "interface": "public", "region_id": "prodstack6", "url": "https://heat.ps6.canonical.com:8004/v1/623df63b80274c21bc79a0c35e68d615", "region": "prodstack6"}, {"id": "5e19c32243c04a3faf1e5f9ab900c260", "interface": "internal", "region_id": "prodstack6", "url": "https://heat-internal.ps6.canonical.com:8004/v1/623df63b80274c21bc79a0c35e68d615", "region": "prodstack6"}, {"id": "b3fc5c88ec8543a691fec75726b86967", "interface": "admin", "region_id": "prodstack6", "url": "https://heat-admin.ps6.canonical.com:8004/v1/623df63b80274c21bc79a0c35e68d615", "region": "prodstack6"}], "id": "43b926205044476b8093b18d8ce0a9e4", "type": "orchestration", "name": "heat"}, {"endpoints": [{"id": "a47569b96e5b4146a312e4673504557c", "interface": "public", "region_id": "prodstack6", "url": "https://glance.ps6.canonical.com:9292", "region": "prodstack6"}, {"id": "bba35c4ab04f4114a2a34e65568537bd", "interface": "internal", "region_id": "prodstack6", "url": "https://glance-internal.ps6.canonical.com:9292", "region": "prodstack6"}, {"id": "ef769f1117c74a62a279131486c89628", "interface": "admin", "region_id": "prodstack6", "url": "https://glance-admin.ps6.canonical.com:9292", "region": "prodstack6"}], "id": "49de724549524bd78e9cd46a4477226f", "type": "image", "name": "glance"}, {"endpoints": [{"id": "a1a41e9a1e2d42e5b6cd5380cd1e21bf", "interface": "admin", "region_id": "prodstack6", "url": "https://cinder-admin.ps6.canonical.com:8776/v3/623df63b80274c21bc79a0c35e68d615", "region": "prodstack6"}, {"id": "d2309a99724b4111827482c68a832c0c", "interface": "public", "region_id": "prodstack6", "url": "https://cinder.ps6.canonical.com:8776/v3/623df63b80274c21bc79a0c35e68d615", "region": "prodstack6"}, {"id": "f8a02e3949ff42afa772eb5e74dbef9f", "interface": "internal", "region_id": "prodstack6", "url": "https://cinder-internal.ps6.canonical.com:8776/v3/623df63b80274c21bc79a0c35e68d615", "region": "prodstack6"}], "id": "5bf6578a631349e3af4bf36d7adb18e1", "type": "volumev3", "name": "cinderv3"}, {"endpoints": [{"id": "01d84128f36444e9b01549b86bd69116", "interface": "admin", "region_id": "prodstack6", "url": "https://barbican-admin.ps6.canonical.com:9312", "region": "prodstack6"}, {"id": "0ce4a8777e0b40a88f7fc0f77e34a605", "interface": "public", "region_id": "prodstack6", "url": "https://barbican.ps6.canonical.com:9311", "region": "prodstack6"}, {"id": "f507ba49e4a7435cb330234217c92449", "interface": "internal", "region_id": "prodstack6", "url": "https://barbican-internal.ps6.canonical.com:9311", "region": "prodstack6"}], "id": "62cb1c3d9f6c45979c13516a6b3ff114", "type": "key-manager", "name": "barbican"}, {"endpoints": [{"id": "3cb6121bd8f14da8aa2fba7be823a2b4", "interface": "internal", "region_id": "prodstack6", "url": "https://neutron-internal.ps6.canonical.com:9696", "region": "prodstack6"}, {"id": "46ba11d133fe4e8f9e8f9097ba737682", "interface": "admin", "region_id": "prodstack6", "url": "https://neutron-admin.ps6.canonical.com:9696", "region": "prodstack6"}, {"id": "d872eb6aa23d40009165aa3dcdce3948", "interface": "public", "region_id": "prodstack6", "url": "https://neutron.ps6.canonical.com:9696", "region": "prodstack6"}], "id": "759cb6fdfbc146dd8b9d1ba444c4b9db", "type": "network", "name": "neutron"}, {"endpoints": [{"id": "4349d565f72446da9699269f85df5e8b", "interface": "internal", "region_id": "prodstack6", "url": "https://manila-internal.ps6.canonical.com:8786/v2/623df63b80274c21bc79a0c35e68d615", "region": "prodstack6"}, {"id": "a483dcc58f5e415e9ec739c94474e609", "interface": "public", "region_id": "prodstack6", "url": "https://manila.ps6.canonical.com:8786/v2/623df63b80274c21bc79a0c35e68d615", "region": "prodstack6"}, {"id": "c1f14236723e42878562d8dd63d5a6a0", "interface": "admin", "region_id": "prodstack6", "url": "https://manila-admin.ps6.canonical.com:8786/v2/623df63b80274c21bc79a0c35e68d615", "region": "prodstack6"}], "id": "93fc4008035946deb1f433c2dd905a5d", "type": "sharev2", "name": "manilav2"}, {"endpoints": [{"id": "0fa148793c7249c8b187b6b4ff425731", "interface": "internal", "region_id": "prodstack6", "url": "https://radosgw-internal.ps6.canonical.com:443/swift/v1/AUTH_e4b04ca58d734ed0aa29e306adad4f79/simplestreams/data", "region": "prodstack6"}, {"id": "555ade266a6b4bcc81b6e5abf607aec5", "interface": "public", "region_id": "prodstack6", "url": "https://radosgw.ps6.canonical.com:443/swift/v1/AUTH_e4b04ca58d734ed0aa29e306adad4f79/simplestreams/data", "region": "prodstack6"}, {"id": "7dad1a7b1552465686424fc014463173", "interface": "admin", "region_id": "prodstack6", "url": "https://radosgw-admin.ps6.canonical.com:443/swift/simplestreams/data", "region": "prodstack6"}], "id": "977dd359af1a4fcc91a9daf4dc33b0f3", "type": "product-streams", "name": "image-stream"}, {"endpoints": [{"id": "12d30eabcdec4831bd15273d55b1cbab", "interface": "internal", "region_id": "prodstack6", "url": "https://manila-internal.ps6.canonical.com:8786/v1/623df63b80274c21bc79a0c35e68d615", "region": "prodstack6"}, {"id": "29d35b2b483346479f1ff1a13604d50e", "interface": "admin", "region_id": "prodstack6", "url": "https://manila-admin.ps6.canonical.com:8786/v1/623df63b80274c21bc79a0c35e68d615", "region": "prodstack6"}, {"id": "4aa1422b8f5945d8aed9ba6a8d670e5c", "interface": "public", "region_id": "prodstack6", "url": "https://manila.ps6.canonical.com:8786/v1/623df63b80274c21bc79a0c35e68d615", "region": "prodstack6"}], "id": "ac5e4f28fa794cde99f1d7ffc1b664e5", "type": "share", "name": "manila"}, {"endpoints": [{"id": "c7db93d54a684d8caeae1d9e18a59118", "interface": "admin", "region_id": "prodstack6", "url": "https://nova-admin.ps6.canonical.com:8774/v2.1", "region": "prodstack6"}, {"id": "dd7a796f401b477f9f1b5bbc05747d8d", "interface": "public", "region_id": "prodstack6", "url": "https://nova.ps6.canonical.com:8774/v2.1", "region": "prodstack6"}, {"id": "e7ecb038d830462ea67b0b463af5e013", "interface": "internal", "region_id": "prodstack6", "url": "https://nova-internal.ps6.canonical.com:8774/v2.1", "region": "prodstack6"}], "id": "b4519af08e174d4a8333a2d14ac3ba3b", "type": "compute", "name": "nova"}, {"endpoints": [{"id": "02ef5b6154934ffd97d8b5b8e4d70d2a", "interface": "internal", "region_id": "prodstack6", "url": "https://radosgw-internal.ps6.canonical.com:443/swift/v1/AUTH_623df63b80274c21bc79a0c35e68d615", "region": "prodstack6"}, {"id": "2741abe526e94842a4fa801423ba1ef0", "interface": "public", "region_id": "prodstack6", "url": "https://radosgw.ps6.canonical.com:443/swift/v1/AUTH_623df63b80274c21bc79a0c35e68d615", "region": "prodstack6"}, {"id": "3742f9406c604516933d6fd8c29e0880", "interface": "admin", "region_id": "prodstack6", "url": "https://radosgw-admin.ps6.canonical.com:443/swift", "region": "prodstack6"}], "id": "c7f07a7b3b3c408c96200dfd1d1a0f6f", "type": "object-store", "name": "swift"}, {"endpoints": [{"id": "06d4ed6c160a43f2b7fa7f80ad1dc709", "interface": "internal", "region_id": "prodstack6", "url": "https://designate-internal.ps6.canonical.com:9001", "region": "prodstack6"}, {"id": "1e240624a50c4ca0aaa6ef63cbc94f1b", "interface": "admin", "region_id": "prodstack6", "url": "https://designate-admin.ps6.canonical.com:9001", "region": "prodstack6"}, {"id": "f94d7d17997a43fd9c63b34c43301c6e", "interface": "public", "region_id": "prodstack6", "url": "https://designate.ps6.canonical.com:9001", "region": "prodstack6"}], "id": "cf82013d63844fedbe96bcacb6bd1fef", "type": "dns", "name": "designate"}, {"endpoints": [{"id": "4a688340be464710bfa60bf3f88f41c4", "interface": "admin", "region_id": "prodstack6", "url": "https://gnocchi-admin.ps6.canonical.com:8041", "region": "prodstack6"}, {"id": "a5a95506c96d4716adb4efc3ac9051be", "interface": "public", "region_id": "prodstack6", "url": "https://gnocchi.ps6.canonical.com:8041", "region": "prodstack6"}, {"id": "eebc17a086834f8fa8bb6b35c8061a8c", "interface": "internal", "region_id": "prodstack6", "url": "https://gnocchi-internal.ps6.canonical.com:8041", "region": "prodstack6"}], "id": "d10589e854a446a5b852593f33f170a7", "type": "metric", "name": "gnocchi"}, {"endpoints": [{"id": "08f66df28d0f47f3bec12f29e06d85ac", "interface": "admin", "region_id": "prodstack6", "url": "https://keystone-admin.ps6.canonical.com:35357/v3", "region": "prodstack6"}, {"id": "46d270b45ceb42db902f4d241afa6a70", "interface": "public", "region_id": "prodstack6", "url": "https://keystone.ps6.canonical.com:5000/v3", "region": "prodstack6"}, {"id": "a4addee11d9349cfa46ec6660dbad947", "interface": "internal", "region_id": "prodstack6", "url": "https://keystone-internal.ps6.canonical.com:5000/v3", "region": "prodstack6"}], "id": "deb38a775a9b4e87a8de9e3eed779882", "type": "identity", "name": "keystone"}, {"endpoints": [{"id": "18b4af5f40664babb94e884c6a53ccf3", "interface": "admin", "region_id": "prodstack6", "url": "https://octavia-admin.ps6.canonical.com:9876", "region": "prodstack6"}, {"id": "2b6f7ba7f9944ee1aebd6dccc5223b2d", "interface": "internal", "region_id": "prodstack6", "url": "https://octavia-internal.ps6.canonical.com:9876", "region": "prodstack6"}, {"id": "5e3012e9c79e4890be4d964b6208f5c6", "interface": "public", "region_id": "prodstack6", "url": "https://octavia.ps6.canonical.com:9876", "region": "prodstack6"}], "id": "e00337be20d54948b66a1c3109b885c6", "type": "load-balancer", "name": "octavia"}, {"endpoints": [{"id": "2d2942b35f3041389ad810f679d02f22", "interface": "public", "region_id": "prodstack6", "url": "https://placement.ps6.canonical.com:8778", "region": "prodstack6"}, {"id": "2e3beaac7ac14284b72e2592820ad725", "interface": "admin", "region_id": "prodstack6", "url": "https://placement-admin.ps6.canonical.com:8778", "region": "prodstack6"}, {"id": "91060f6df9ae444f81808adf40540d94", "interface": "internal", "region_id": "prodstack6", "url": "https://placement-internal.ps6.canonical.com:8778", "region": "prodstack6"}], "id": "edc6e37f154f4c0ab3dd4d52b82bf873", "type": "placement", "name": "placement"}]}}
712s REQ: curl -g -i -X GET https://nova.ps6.canonical.com:8774/v2.1 -H "Accept: application/json" -H "User-Agent: python-novaclient" -H "X-Auth-Token: {SHA256}c94feb866867e840bb459d76ae13745a78da6325041f1d83392f5d207d8b2ff6"
712s DEBUG (session:517) REQ: curl -g -i -X GET https://nova.ps6.canonical.com:8774/v2.1 -H "Accept: application/json" -H "User-Agent: python-novaclient" -H "X-Auth-Token: {SHA256}c94feb866867e840bb459d76ae13745a78da6325041f1d83392f5d207d8b2ff6"
712s DEBUG (connectionpool:962) Starting new HTTPS connection (1): nova.ps6.canonical.com:8774
712s DEBUG (connectionpool:429) https://nova.ps6.canonical.com:8774 "GET /v2.1 HTTP/1.1" 302 0
712s RESP: [302] Connection: Keep-Alive Content-Length: 0 Content-Type: text/plain; charset=utf8 Date: Fri, 29 Nov 2024 21:19:53 GMT Keep-Alive: timeout=75, max=1000 Location: https://nova.ps6.canonical.com:8774/v2.1/ Server: Apache/2.4.52 (Ubuntu) x-compute-request-id: req-c27ad0cc-75a0-414e-adfa-2f89ca7fb678 x-openstack-request-id: req-c27ad0cc-75a0-414e-adfa-2f89ca7fb678
712s DEBUG (session:548) RESP: [302] Connection: Keep-Alive Content-Length: 0 Content-Type: text/plain; charset=utf8 Date: Fri, 29 Nov 2024 21:19:53 GMT Keep-Alive: timeout=75, max=1000 Location: https://nova.ps6.canonical.com:8774/v2.1/ Server: Apache/2.4.52 (Ubuntu) x-compute-request-id: req-c27ad0cc-75a0-414e-adfa-2f89ca7fb678 x-openstack-request-id: req-c27ad0cc-75a0-414e-adfa-2f89ca7fb678
712s RESP BODY: Omitted, Content-Type is set to text/plain; charset=utf8. Only application/json responses have their bodies logged.
712s DEBUG (session:580) RESP BODY: Omitted, Content-Type is set to text/plain; charset=utf8. Only application/json responses have their bodies logged.
712s DEBUG (connectionpool:429) https://nova.ps6.canonical.com:8774 "GET /v2.1/ HTTP/1.1" 200 397
712s RESP: [200] Connection: Keep-Alive Content-Length: 397 Content-Type: application/json Date: Fri, 29 Nov 2024 21:19:53 GMT Keep-Alive: timeout=75, max=999 OpenStack-API-Version: compute 2.1 Server: Apache/2.4.52 (Ubuntu) Vary: OpenStack-API-Version,X-OpenStack-Nova-API-Version X-OpenStack-Nova-API-Version: 2.1 x-compute-request-id: req-826625a5-f9d9-4f3e-aae0-4c506d08dd83 x-openstack-request-id: req-826625a5-f9d9-4f3e-aae0-4c506d08dd83
712s DEBUG (session:548) RESP: [200] Connection: Keep-Alive Content-Length: 397 Content-Type: application/json Date: Fri, 29 Nov 2024 21:19:53 GMT Keep-Alive: timeout=75, max=999 OpenStack-API-Version: compute 2.1 Server: Apache/2.4.52 (Ubuntu) Vary: OpenStack-API-Version,X-OpenStack-Nova-API-Version X-OpenStack-Nova-API-Version: 2.1 x-compute-request-id: req-826625a5-f9d9-4f3e-aae0-4c506d08dd83 x-openstack-request-id: req-826625a5-f9d9-4f3e-aae0-4c506d08dd83
712s RESP BODY: {"version": {"id": "v2.1", "status": "CURRENT", "version": "2.90", "min_version": "2.1", "updated": "2013-07-23T11:33:21Z", "links": [{"rel": "self", "href": "https://nova.ps6.canonical.com:8774/v2.1/"}, {"rel": "describedby", "type": "text/html", "href": "http://docs.openstack.org/"}], "media-types": [{"base": "application/json", "type": "application/vnd.openstack.compute+json;version=2.1"}]}}
712s DEBUG (session:580) RESP BODY: {"version": {"id": "v2.1", "status": "CURRENT", "version": "2.90", "min_version": "2.1", "updated": "2013-07-23T11:33:21Z", "links": [{"rel": "self", "href": "https://nova.ps6.canonical.com:8774/v2.1/"}, {"rel": "describedby", "type": "text/html", "href": "http://docs.openstack.org/"}], "media-types": [{"base": "application/json", "type": "application/vnd.openstack.compute+json;version=2.1"}]}}
712s GET call to compute for https://nova.ps6.canonical.com:8774/v2.1/ used request id req-826625a5-f9d9-4f3e-aae0-4c506d08dd83
712s DEBUG (session:936) GET call to compute for https://nova.ps6.canonical.com:8774/v2.1/ used request id req-826625a5-f9d9-4f3e-aae0-4c506d08dd83
712s DEBUG (extension:189) found extension EntryPoint.parse('v1password = swiftclient.authv1:PasswordLoader')
712s DEBUG (extension:189) found extension EntryPoint.parse('noauth = cinderclient.contrib.noauth:CinderNoAuthLoader')
712s DEBUG (extension:189) found extension EntryPoint.parse('admin_token = keystoneauth1.loading._plugins.admin_token:AdminToken')
712s DEBUG (extension:189) found extension EntryPoint.parse('none = keystoneauth1.loading._plugins.noauth:NoAuth')
712s DEBUG (extension:189) found extension EntryPoint.parse('password = keystoneauth1.loading._plugins.identity.generic:Password')
712s DEBUG (extension:189) found extension EntryPoint.parse('token = keystoneauth1.loading._plugins.identity.generic:Token')
712s DEBUG (extension:189) found extension EntryPoint.parse('v2password = keystoneauth1.loading._plugins.identity.v2:Password')
712s DEBUG (extension:189) found extension EntryPoint.parse('v2token = keystoneauth1.loading._plugins.identity.v2:Token')
712s DEBUG (extension:189) found extension EntryPoint.parse('v3adfspassword = keystoneauth1.extras._saml2._loading:ADFSPassword')
712s DEBUG (extension:189) found extension EntryPoint.parse('v3applicationcredential = keystoneauth1.loading._plugins.identity.v3:ApplicationCredential')
712s DEBUG (extension:189) found extension EntryPoint.parse('v3fedkerb = keystoneauth1.extras.kerberos._loading:MappedKerberos')
712s DEBUG (extension:189) found extension EntryPoint.parse('v3kerberos = keystoneauth1.extras.kerberos._loading:Kerberos')
712s DEBUG (extension:189) found extension EntryPoint.parse('v3multifactor = keystoneauth1.loading._plugins.identity.v3:MultiFactor')
712s DEBUG (extension:189) found extension EntryPoint.parse('v3oauth1 = keystoneauth1.extras.oauth1._loading:V3OAuth1')
712s DEBUG (extension:189) found extension EntryPoint.parse('v3oidcaccesstoken = keystoneauth1.loading._plugins.identity.v3:OpenIDConnectAccessToken')
712s DEBUG (extension:189) found extension EntryPoint.parse('v3oidcauthcode = keystoneauth1.loading._plugins.identity.v3:OpenIDConnectAuthorizationCode')
712s DEBUG (extension:189) found extension EntryPoint.parse('v3oidcclientcredentials = keystoneauth1.loading._plugins.identity.v3:OpenIDConnectClientCredentials')
712s DEBUG (extension:189) found extension EntryPoint.parse('v3oidcpassword = keystoneauth1.loading._plugins.identity.v3:OpenIDConnectPassword')
712s DEBUG (extension:189) found extension EntryPoint.parse('v3password = keystoneauth1.loading._plugins.identity.v3:Password')
712s DEBUG (extension:189) found extension EntryPoint.parse('v3samlpassword = keystoneauth1.extras._saml2._loading:Saml2Password')
712s DEBUG (extension:189) found extension EntryPoint.parse('v3token = keystoneauth1.loading._plugins.identity.v3:Token')
712s DEBUG (extension:189) found extension EntryPoint.parse('v3tokenlessauth = keystoneauth1.loading._plugins.identity.v3:TokenlessAuth')
712s DEBUG (extension:189) found extension EntryPoint.parse('v3totp = keystoneauth1.loading._plugins.identity.v3:TOTP')
712s DEBUG (session:517) REQ: curl -g -i -X GET https://glance.ps6.canonical.com:9292/v2/images/4310160b-3912-43a6-9b37-357145536086 -H "Accept: application/json" -H "OpenStack-API-Version: compute 2.87" -H "User-Agent: python-novaclient" -H "X-Auth-Token: {SHA256}c94feb866867e840bb459d76ae13745a78da6325041f1d83392f5d207d8b2ff6" -H "X-OpenStack-Nova-API-Version: 2.87"
712s DEBUG (connectionpool:962) Starting new HTTPS connection (1): glance.ps6.canonical.com:9292
712s DEBUG (connectionpool:429) https://glance.ps6.canonical.com:9292 "GET /v2/images/4310160b-3912-43a6-9b37-357145536086 HTTP/1.1" 200 2294
712s DEBUG (session:548) RESP: [200] Connection: Keep-Alive Content-Length: 2294 Content-Type: application/json Date: Fri, 29 Nov 2024 21:19:53 GMT Keep-Alive: timeout=75, max=1000 Server: Apache/2.4.52 (Ubuntu) X-Openstack-Request-Id: req-bd5313b2-16e0-4280-8c5a-7e42dd26c1f7
712s DEBUG (session:580) RESP BODY: {"architecture": "ppc64le", "base_image_ref": "fe0db2b7-58a0-4fc8-80f2-2de75285f410", "boot_roles": "reader,load-balancer_member,member", "content_id": "auto.sync", "hw_cdrom_bus": "scsi", "hw_disk_bus": "virtio", "hw_machine_type": "pseries", "hw_video_model": "vga", "hw_vif_model": "virtio", "image_location": "snapshot", "image_state": "available", "image_type": "snapshot", "instance_uuid": "98175da7-553d-407a-9745-ad804d5e62cd", "item_name": "disk1.img", "os_distro": "ubuntu", "os_version": "25.04", "owner_id": "623df63b80274c21bc79a0c35e68d615", "owner_project_name": "prod-proposed-migration-ppc64el_project", "owner_user_name": "prod-proposed-migration-ppc64el", "product_name": "com.ubuntu.cloud.daily:server:25.04:ppc64el", "simplestreams_metadata": "{\"aliases\": \"25.04,p,plucky,devel\", \"arch\": \"ppc64el\", \"ftype\": \"disk1.img\", \"label\": \"daily\", \"md5\": \"868c4a485be864f509a834d2ceda4d5a\", \"os\": \"ubuntu\", \"pubname\": \"ubuntu-plucky-daily-ppc64el-server-20241122\", \"release\": \"plucky\", \"release_codename\": \"P", "source_content_id": "com.ubuntu.cloud:daily:download", "user_id": "c871debdeffd4cb8b69ce618fc4aa361", "version_name": "20241122", "name": "adt/ubuntu-plucky-ppc64el-server-20241129.img", "disk_format": "qcow2", "container_format": "bare", "visibility": "private", "size": 2717908992, "virtual_size": 21474836480, "status": "active", "checksum": "60910889151d80fa91781373f13ea8f3", "protected": false, "min_ram": 0, "min_disk": 20, "owner": "623df63b80274c21bc79a0c35e68d615", "os_hidden": false, "os_hash_algo": "sha512", "os_hash_value": "1edbba326782242ba8691f1f814946e3c028441fb2decb1a490a60bcf873482df806d9c79a8a6544404da2b8e9cdfde2e5fa797bf83c91edf2a11bd6d6c2843f", "id": "4310160b-3912-43a6-9b37-357145536086", "created_at": "2024-11-29T06:32:16Z", "updated_at": "2024-11-29T06:32:44Z", "locations": [{"url": "rbd://eea9d068-c18c-11ed-8dc0-013aacb71b80/glance/4310160b-3912-43a6-9b37-357145536086/snap", "metadata": {"store": "ceph"}}], "direct_url": "rbd://eea9d068-c18c-11ed-8dc0-013aacb71b80/glance/4310160b-3912-43a6-9b37-357145536086/snap", "tags": [], "self": "/v2/images/4310160b-3912-43a6-9b37-357145536086", "file": "/v2/images/4310160b-3912-43a6-9b37-357145536086/file", "schema": "/v2/schemas/image", "stores": "ceph"}
712s DEBUG (session:936) GET call to image for https://glance.ps6.canonical.com:9292/v2/images/4310160b-3912-43a6-9b37-357145536086 used request id req-bd5313b2-16e0-4280-8c5a-7e42dd26c1f7
712s DEBUG (session:517) REQ: curl -g -i -X GET https://nova.ps6.canonical.com:8774/v2.1/flavors/autopkgtest-ppc64el -H "Accept: application/json" -H "OpenStack-API-Version: compute 2.87" -H "User-Agent: python-novaclient" -H "X-Auth-Token: {SHA256}c94feb866867e840bb459d76ae13745a78da6325041f1d83392f5d207d8b2ff6" -H "X-OpenStack-Nova-API-Version: 2.87"
712s DEBUG (connectionpool:429) https://nova.ps6.canonical.com:8774 "GET /v2.1/flavors/autopkgtest-ppc64el HTTP/1.1" 404 92
712s DEBUG (session:548) RESP: [404] Connection: Keep-Alive Content-Length: 92 Content-Type: application/json; charset=UTF-8 Date: Fri, 29 Nov 2024 21:19:53 GMT Keep-Alive: timeout=75, max=998 OpenStack-API-Version: compute 2.87 Server: Apache/2.4.52 (Ubuntu) Vary: OpenStack-API-Version,X-OpenStack-Nova-API-Version X-OpenStack-Nova-API-Version: 2.87 x-compute-request-id: req-a7f24a8c-955a-4d3e-aaf1-80f966a730f4 x-openstack-request-id: req-a7f24a8c-955a-4d3e-aaf1-80f966a730f4
712s DEBUG (session:580) RESP BODY: {"itemNotFound": {"code": 404, "message": "Flavor autopkgtest-ppc64el could not be found."}}
712s DEBUG (session:936) GET call to compute for https://nova.ps6.canonical.com:8774/v2.1/flavors/autopkgtest-ppc64el used request id req-a7f24a8c-955a-4d3e-aaf1-80f966a730f4
712s DEBUG (session:517) REQ: curl -g -i -X GET https://nova.ps6.canonical.com:8774/v2.1/flavors?is_public=None -H "Accept: application/json" -H "OpenStack-API-Version: compute 2.87" -H "User-Agent: python-novaclient" -H "X-Auth-Token: {SHA256}c94feb866867e840bb459d76ae13745a78da6325041f1d83392f5d207d8b2ff6" -H "X-OpenStack-Nova-API-Version: 2.87"
712s DEBUG (connectionpool:429) https://nova.ps6.canonical.com:8774 "GET /v2.1/flavors?is_public=None HTTP/1.1" 200 39839
712s DEBUG (session:548) RESP: [200] Connection: Keep-Alive Content-Length: 39839 Content-Type: application/json Date: Fri, 29 Nov 2024 21:19:53 GMT Keep-Alive: timeout=75, max=997 OpenStack-API-Version: compute 2.87 Server: Apache/2.4.52 (Ubuntu) Vary: OpenStack-API-Version,X-OpenStack-Nova-API-Version X-OpenStack-Nova-API-Version: 2.87 x-compute-request-id: req-3a0d6b23-98d0-428b-a56a-58694827e454 x-openstack-request-id: req-3a0d6b23-98d0-428b-a56a-58694827e454
712s DEBUG (session:580) RESP BODY: {"flavors": [{"id": "05338e57-e2ba-4813-9a8a-2f2af73f8ab2", "name": "builder-ppc64el-cpu2-ram4-disk100", "links": [{"rel": "self", "href": "https://nova.ps6.canonical.com:8774/v2.1/flavors/05338e57-e2ba-4813-9a8a-2f2af73f8ab2"}, {"rel": "bookmark", "href": "https://nova.ps6.canonical.com:8774/flavors/05338e57-e2ba-4813-9a8a-2f2af73f8ab2"}], "description": null}, {"id": "08090b4b-98a9-4c15-8ad4-cc6711700879", "name": "builder-ppc64el-cpu8-ram64-disk20", "links": [{"rel": "self", "href": "https://nova.ps6.canonical.com:8774/v2.1/flavors/08090b4b-98a9-4c15-8ad4-cc6711700879"}, {"rel": "bookmark", "href": "https://nova.ps6.canonical.com:8774/flavors/08090b4b-98a9-4c15-8ad4-cc6711700879"}], "description": null}, {"id": "0825b8b1-2b9c-42bf-b3e6-e827c22d8df5", "name": "builder-ppc64el-cpu8-ram4-disk100", "links": [{"rel": "self", "href": "https://nova.ps6.canonical.com:8774/v2.1/flavors/0825b8b1-2b9c-42bf-b3e6-e827c22d8df5"}, {"rel": "bookmark", "href": "https://nova.ps6.canonical.com:8774/flavors/0825b8b1-2b9c-42bf-b3e6-e827c22d8df5"}], "description": null}, {"id": "0b06db45-151e-44b2-b0f5-f069ad7fa1cb", "name": "builder-ppc64el-cpu2-ram12-disk20", "links": [{"rel": "self", "href": "https://nova.ps6.canonical.com:8774/v2.1/flavors/0b06db45-151e-44b2-b0f5-f069ad7fa1cb"}, {"rel": "bookmark", "href": "https://nova.ps6.canonical.com:8774/flavors/0b06db45-151e-44b2-b0f5-f069ad7fa1cb"}], "description": null}, {"id": "0dbf127e-3101-4f05-9d37-15ad6d2a45c1", "name": "builder-ppc64el-cpu2-ram16-disk20", "links": [{"rel": "self", "href": "https://nova.ps6.canonical.com:8774/v2.1/flavors/0dbf127e-3101-4f05-9d37-15ad6d2a45c1"}, {"rel": "bookmark", "href": "https://nova.ps6.canonical.com:8774/flavors/0dbf127e-3101-4f05-9d37-15ad6d2a45c1"}], "description": null}, {"id": "102d0b57-e8d2-46c6-9be4-f452119a0280", "name": "autopkgtest-ppc64el", "links": [{"rel": "self", "href": "https://nova.ps6.canonical.com:8774/v2.1/flavors/102d0b57-e8d2-46c6-9be4-f452119a0280"}, {"rel": "bookmark", "href": "https://nova.ps6.canonical.com:8774/flavors/102d0b57-e8d2-46c6-9be4-f452119a0280"}], "description": null}, {"id": "1219f5f0-83f3-4d33-a3bb-1a85c6303159", "name": "builder-ppc64el-cpu128-ram64-disk50", "links": [{"rel": "self", "href": "https://nova.ps6.canonical.com:8774/v2.1/flavors/1219f5f0-83f3-4d33-a3bb-1a85c6303159"}, {"rel": "bookmark", "href": "https://nova.ps6.canonical.com:8774/flavors/1219f5f0-83f3-4d33-a3bb-1a85c6303159"}], "description": null}, {"id": "1359c5a4-ee60-4855-9bcc-defd3bff7121", "name": "builder-ppc64el-cpu8-ram8-disk50", "links": [{"rel": "self", "href": "https://nova.ps6.canonical.com:8774/v2.1/flavors/1359c5a4-ee60-4855-9bcc-defd3bff7121"}, {"rel": "bookmark", "href": "https://nova.ps6.canonical.com:8774/flavors/1359c5a4-ee60-4855-9bcc-defd3bff7121"}], "description": null}, {"id": "161f21bc-11f7-4ec9-a322-04fc3e0d2a68", "name": "builder-ppc64el-cpu2-ram55-disk20", "links": [{"rel": "self", "href": "https://nova.ps6.canonical.com:8774/v2.1/flavors/161f21bc-11f7-4ec9-a322-04fc3e0d2a68"}, {"rel": "bookmark", "href": "https://nova.ps6.canonical.com:8774/flavors/161f21bc-11f7-4ec9-a322-04fc3e0d2a68"}], "description": null}, {"id": "166070cd-7110-473e-a6a2-5e25aa9eeefd", "name": "builder-ppc64el-cpu4-ram64-disk100", "links": [{"rel": "self", "href": "https://nova.ps6.canonical.com:8774/v2.1/flavors/166070cd-7110-473e-a6a2-5e25aa9eeefd"}, {"rel": "bookmark", "href": "https://nova.ps6.canonical.com:8774/flavors/166070cd-7110-473e-a6a2-5e25aa9eeefd"}], "description": null}, {"id": "16a0a259-4627-4fbd-bb9d-a3e69346467c", "name": "builder-ppc64el-cpu8-ram64-disk50", "links": [{"rel": "self", "href": "https://nova.ps6.canonical.com:8774/v2.1/flavors/16a0a259-4627-4fbd-bb9d-a3e69346467c"}, {"rel": "bookmark", "href": "https://nova.ps6.canonical.com:8774/flavors/16a0a259-4627-4fbd-bb9d-a3e69346467c"}], "description": null}, {"id": "1c59e50a-1a67-4691-8f2c-6954cb0f83ba", "name": "builder-ppc64el-cpu4-ram128-disk20", "links": [{"rel": "self", "href": "https://nova.ps6.canonical.com:8774/v2.1/flavors/1c59e50a-1a67-4691-8f2c-6954cb0f83ba"}, {"rel": "bookmark", "href": "https://nova.ps6.canonical.com:8774/flavors/1c59e50a-1a67-4691-8f2c-6954cb0f83ba"}], "description": null}, {"id": "1c94efa8-905a-4bff-8485-0aaf9ac47fe7", "name": "builder-ppc64el-cpu4-ram16-disk50", "links": [{"rel": "self", "href": "https://nova.ps6.canonical.com:8774/v2.1/flavors/1c94efa8-905a-4bff-8485-0aaf9ac47fe7"}, {"rel": "bookmark", "href": "https://nova.ps6.canonical.com:8774/flavors/1c94efa8-905a-4bff-8485-0aaf9ac47fe7"}], "description": null}, {"id": "213c954d-26ed-4c86-9592-66384bc22c82", "name": "builder-ppc64el-cpu4-ram16-disk100", "links": [{"rel": "self", "href": "https://nova.ps6.canonical.com:8774/v2.1/flavors/213c954d-26ed-4c86-9592-66384bc22c82"}, {"rel": "bookmark", "href": 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"https://nova.ps6.canonical.com:8774/flavors/e628d527-f077-426d-9380-5eea778aabc2"}], "description": null}, {"id": "e752e039-cbe4-4a16-8197-de87ba42b83e", "name": "builder-ppc64el-cpu64-ram256-disk100", "links": [{"rel": "self", "href": "https://nova.ps6.canonical.com:8774/v2.1/flavors/e752e039-cbe4-4a16-8197-de87ba42b83e"}, {"rel": "bookmark", "href": "https://nova.ps6.canonical.com:8774/flavors/e752e039-cbe4-4a16-8197-de87ba42b83e"}], "description": null}, {"id": "e7f811c8-a60c-45c6-86c8-8e4b025751df", "name": "builder-ppc64el-cpu4-ram16-disk40", "links": [{"rel": "self", "href": "https://nova.ps6.canonical.com:8774/v2.1/flavors/e7f811c8-a60c-45c6-86c8-8e4b025751df"}, {"rel": "bookmark", "href": "https://nova.ps6.canonical.com:8774/flavors/e7f811c8-a60c-45c6-86c8-8e4b025751df"}], "description": null}, {"id": "eb80d7e2-b6e1-42a5-b80d-3dad861f6989", "name": "builder-ppc64el-cpu16-ram4-disk20", "links": [{"rel": "self", "href": "https://nova.ps6.canonical.com:8774/v2.1/flavors/eb80d7e2-b6e1-42a5-b80d-3dad861f6989"}, {"rel": "bookmark", "href": "https://nova.ps6.canonical.com:8774/flavors/eb80d7e2-b6e1-42a5-b80d-3dad861f6989"}], "description": null}, {"id": "ed127e2b-02b8-4e61-bf10-0c89b90928e6", "name": "builder-ppc64el-cpu64-ram128-disk50", "links": [{"rel": "self", "href": "https://nova.ps6.canonical.com:8774/v2.1/flavors/ed127e2b-02b8-4e61-bf10-0c89b90928e6"}, {"rel": "bookmark", "href": "https://nova.ps6.canonical.com:8774/flavors/ed127e2b-02b8-4e61-bf10-0c89b90928e6"}], "description": null}, {"id": "ef7301a7-71f4-48ac-b387-23251f4060e1", "name": "builder-ppc64el-cpu16-ram8-disk100", "links": [{"rel": "self", "href": "https://nova.ps6.canonical.com:8774/v2.1/flavors/ef7301a7-71f4-48ac-b387-23251f4060e1"}, {"rel": "bookmark", "href": "https://nova.ps6.canonical.com:8774/flavors/ef7301a7-71f4-48ac-b387-23251f4060e1"}], "description": null}, {"id": "f0f1af4d-f230-40c1-b789-c94e02a68daa", "name": "builder-ppc64el-cpu16-ram8-disk20", "links": [{"rel": "self", "href": "https://nova.ps6.canonical.com:8774/v2.1/flavors/f0f1af4d-f230-40c1-b789-c94e02a68daa"}, {"rel": "bookmark", "href": "https://nova.ps6.canonical.com:8774/flavors/f0f1af4d-f230-40c1-b789-c94e02a68daa"}], "description": null}, {"id": "f40b2dbc-5d69-40b0-a9fc-71c32de93ca3", "name": "autopkgtest-big-ppc64el", "links": [{"rel": "self", "href": "https://nova.ps6.canonical.com:8774/v2.1/flavors/f40b2dbc-5d69-40b0-a9fc-71c32de93ca3"}, {"rel": "bookmark", "href": "https://nova.ps6.canonical.com:8774/flavors/f40b2dbc-5d69-40b0-a9fc-71c32de93ca3"}], "description": null}, {"id": "f6aae414-e26b-4692-95d4-d851b6993c2a", "name": "builder-ppc64el-cpu2-ram8-disk50", "links": [{"rel": "self", "href": "https://nova.ps6.canonical.com:8774/v2.1/flavors/f6aae414-e26b-4692-95d4-d851b6993c2a"}, {"rel": "bookmark", "href": "https://nova.ps6.canonical.com:8774/flavors/f6aae414-e26b-4692-95d4-d851b6993c2a"}], "description": null}, {"id": "f91b245b-ad92-47f6-8861-d1e070fcc19c", "name": "builder-ppc64el-cpu2-ram64-disk100", "links": [{"rel": "self", "href": "https://nova.ps6.canonical.com:8774/v2.1/flavors/f91b245b-ad92-47f6-8861-d1e070fcc19c"}, {"rel": "bookmark", "href": "https://nova.ps6.canonical.com:8774/flavors/f91b245b-ad92-47f6-8861-d1e070fcc19c"}], "description": null}, {"id": "fa3bbba4-5e72-4ca3-9661-ccf45947bbf5", "name": "builder-ppc64el-cpu16-ram4-disk100", "links": [{"rel": "self", "href": "https://nova.ps6.canonical.com:8774/v2.1/flavors/fa3bbba4-5e72-4ca3-9661-ccf45947bbf5"}, {"rel": "bookmark", "href": "https://nova.ps6.canonical.com:8774/flavors/fa3bbba4-5e72-4ca3-9661-ccf45947bbf5"}], "description": null}, {"id": "ff4cf1ee-6e00-49b7-9d11-fafa69b910df", "name": "builder-ppc64el-cpu8-ram32-disk40", "links": [{"rel": "self", "href": "https://nova.ps6.canonical.com:8774/v2.1/flavors/ff4cf1ee-6e00-49b7-9d11-fafa69b910df"}, {"rel": "bookmark", "href": "https://nova.ps6.canonical.com:8774/flavors/ff4cf1ee-6e00-49b7-9d11-fafa69b910df"}], "description": null}]}
712s DEBUG (session:936) GET call to compute for https://nova.ps6.canonical.com:8774/v2.1/flavors?is_public=None used request id req-3a0d6b23-98d0-428b-a56a-58694827e454
712s DEBUG (session:517) REQ: curl -g -i -X GET https://nova.ps6.canonical.com:8774/v2.1/flavors/102d0b57-e8d2-46c6-9be4-f452119a0280 -H "Accept: application/json" -H "OpenStack-API-Version: compute 2.87" -H "User-Agent: python-novaclient" -H "X-Auth-Token: {SHA256}c94feb866867e840bb459d76ae13745a78da6325041f1d83392f5d207d8b2ff6" -H "X-OpenStack-Nova-API-Version: 2.87"
712s DEBUG (connectionpool:429) https://nova.ps6.canonical.com:8774 "GET /v2.1/flavors/102d0b57-e8d2-46c6-9be4-f452119a0280 HTTP/1.1" 200 623
712s DEBUG (session:548) RESP: [200] Connection: Keep-Alive Content-Length: 623 Content-Type: application/json Date: Fri, 29 Nov 2024 21:19:53 GMT Keep-Alive: timeout=75, max=996 OpenStack-API-Version: compute 2.87 Server: Apache/2.4.52 (Ubuntu) Vary: OpenStack-API-Version,X-OpenStack-Nova-API-Version X-OpenStack-Nova-API-Version: 2.87 x-compute-request-id: req-b8b824a1-3175-4255-81c9-92e60cda388c x-openstack-request-id: req-b8b824a1-3175-4255-81c9-92e60cda388c
712s DEBUG (session:580) RESP BODY: {"flavor": {"id": "102d0b57-e8d2-46c6-9be4-f452119a0280", "name": "autopkgtest-ppc64el", "ram": 4096, "disk": 20, "swap": 0, "OS-FLV-EXT-DATA:ephemeral": 0, "OS-FLV-DISABLED:disabled": false, "vcpus": 2, "os-flavor-access:is_public": false, "rxtx_factor": 1.0, "links": [{"rel": "self", "href": "https://nova.ps6.canonical.com:8774/v2.1/flavors/102d0b57-e8d2-46c6-9be4-f452119a0280"}, {"rel": "bookmark", "href": "https://nova.ps6.canonical.com:8774/flavors/102d0b57-e8d2-46c6-9be4-f452119a0280"}], "description": null, "extra_specs": {"aggregate_instance_extra_specs:commit": "builder-ppc64el", "hw_rng:allowed": "True"}}}
712s DEBUG (session:936) GET call to compute for https://nova.ps6.canonical.com:8774/v2.1/flavors/102d0b57-e8d2-46c6-9be4-f452119a0280 used request id req-b8b824a1-3175-4255-81c9-92e60cda388c
712s DEBUG (session:517) REQ: curl -g -i -X POST https://nova.ps6.canonical.com:8774/v2.1/servers -H "Accept: application/json" -H "Content-Type: application/json" -H "OpenStack-API-Version: compute 2.87" -H "User-Agent: python-novaclient" -H "X-Auth-Token: {SHA256}c94feb866867e840bb459d76ae13745a78da6325041f1d83392f5d207d8b2ff6" -H "X-OpenStack-Nova-API-Version: 2.87" -d '{"server": {"name": "adt-plucky-ppc64el-htslib-20241129-211904-juju-7f2275-prod-proposed-migration-environment-20-0ca74b99-ef6e-43d6-9706-6668d4f93da1", "imageRef": "4310160b-3912-43a6-9b37-357145536086", "flavorRef": "102d0b57-e8d2-46c6-9be4-f452119a0280", "user_data": "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", "key_name": "testbed-juju-7f2275-prod-proposed-migration-environment-20", "min_count": 1, "max_count": 1, "security_groups": [{"name": "autopkgtest-juju-7f2275-prod-proposed-migration-environment-20@bos03-ppc64el-8.secgroup"}], "networks": [{"uuid": "3083d638-5564-4f5c-97ef-09f045123d20"}]}}'
712s DEBUG (connectionpool:429) https://nova.ps6.canonical.com:8774 "POST /v2.1/servers HTTP/1.1" 202 478
712s DEBUG (session:548) RESP: [202] Connection: Keep-Alive Content-Length: 478 Content-Type: application/json Date: Fri, 29 Nov 2024 21:19:53 GMT Keep-Alive: timeout=75, max=995 OpenStack-API-Version: compute 2.87 Server: Apache/2.4.52 (Ubuntu) Vary: OpenStack-API-Version,X-OpenStack-Nova-API-Version X-OpenStack-Nova-API-Version: 2.87 location: https://nova.ps6.canonical.com:8774/v2.1/servers/f8950e84-104b-4497-96c0-4fd9019d6d7e x-compute-request-id: req-41e65d59-90be-4f38-a010-c868819c9621 x-openstack-request-id: req-41e65d59-90be-4f38-a010-c868819c9621
712s DEBUG (session:580) RESP BODY: {"server": {"id": "f8950e84-104b-4497-96c0-4fd9019d6d7e", "links": [{"rel": "self", "href": "https://nova.ps6.canonical.com:8774/v2.1/servers/f8950e84-104b-4497-96c0-4fd9019d6d7e"}, {"rel": "bookmark", "href": "https://nova.ps6.canonical.com:8774/servers/f8950e84-104b-4497-96c0-4fd9019d6d7e"}], "OS-DCF:diskConfig": "MANUAL", "security_groups": [{"name": "autopkgtest-juju-7f2275-prod-proposed-migration-environment-20@bos03-ppc64el-8.secgroup"}], "adminPass": "Mhp5a6BCmCK9"}}
712s DEBUG (session:936) POST call to compute for https://nova.ps6.canonical.com:8774/v2.1/servers used request id req-41e65d59-90be-4f38-a010-c868819c9621
712s DEBUG (session:517) REQ: curl -g -i -X GET https://nova.ps6.canonical.com:8774/v2.1/servers/f8950e84-104b-4497-96c0-4fd9019d6d7e -H "Accept: application/json" -H "OpenStack-API-Version: compute 2.87" -H "User-Agent: python-novaclient" -H "X-Auth-Token: {SHA256}c94feb866867e840bb459d76ae13745a78da6325041f1d83392f5d207d8b2ff6" -H "X-OpenStack-Nova-API-Version: 2.87"
712s DEBUG (connectionpool:429) https://nova.ps6.canonical.com:8774 "GET /v2.1/servers/f8950e84-104b-4497-96c0-4fd9019d6d7e HTTP/1.1" 200 3198
712s DEBUG (session:548) RESP: [200] Connection: Keep-Alive Content-Length: 3198 Content-Type: application/json Date: Fri, 29 Nov 2024 21:19:54 GMT Keep-Alive: timeout=75, max=994 OpenStack-API-Version: compute 2.87 Server: Apache/2.4.52 (Ubuntu) Vary: OpenStack-API-Version,X-OpenStack-Nova-API-Version X-OpenStack-Nova-API-Version: 2.87 x-compute-request-id: req-9b7a537a-f0a7-4ac6-ab67-b434ac5edcca x-openstack-request-id: req-9b7a537a-f0a7-4ac6-ab67-b434ac5edcca
712s DEBUG (session:580) RESP BODY: {"server": {"id": "f8950e84-104b-4497-96c0-4fd9019d6d7e", "name": "adt-plucky-ppc64el-htslib-20241129-211904-juju-7f2275-prod-proposed-migration-environment-20-0ca74b99-ef6e-43d6-9706-6668d4f93da1", "status": "BUILD", "tenant_id": "623df63b80274c21bc79a0c35e68d615", "user_id": "c871debdeffd4cb8b69ce618fc4aa361", "metadata": {}, "hostId": "", "image": {"id": "4310160b-3912-43a6-9b37-357145536086", "links": [{"rel": "bookmark", "href": "https://nova.ps6.canonical.com:8774/images/4310160b-3912-43a6-9b37-357145536086"}]}, "flavor": {"vcpus": 2, "ram": 4096, "disk": 20, "ephemeral": 0, "swap": 0, "original_name": "autopkgtest-ppc64el", "extra_specs": {"aggregate_instance_extra_specs:commit": "builder-ppc64el", "hw_rng:allowed": "True"}}, "created": "2024-11-29T21:19:54Z", "updated": "2024-11-29T21:19:54Z", "addresses": {}, "accessIPv4": "", "accessIPv6": "", "links": [{"rel": "self", "href": "https://nova.ps6.canonical.com:8774/v2.1/servers/f8950e84-104b-4497-96c0-4fd9019d6d7e"}, {"rel": "bookmark", "href": "https://nova.ps6.canonical.com:8774/servers/f8950e84-104b-4497-96c0-4fd9019d6d7e"}], "OS-DCF:diskConfig": "MANUAL", "progress": 0, "OS-EXT-AZ:availability_zone": "", "config_drive": "", "key_name": "testbed-juju-7f2275-prod-proposed-migration-environment-20", "OS-SRV-USG:launched_at": null, "OS-SRV-USG:terminated_at": null, "OS-EXT-SRV-ATTR:host": null, "OS-EXT-SRV-ATTR:instance_name": "", "OS-EXT-SRV-ATTR:hypervisor_hostname": null, "OS-EXT-SRV-ATTR:reservation_id": "r-oz266b32", "OS-EXT-SRV-ATTR:launch_index": 0, "OS-EXT-SRV-ATTR:hostname": "adt-plucky-ppc64el-htslib-20241129-211904-juju-7f2275-prod-prop", "OS-EXT-SRV-ATTR:kernel_id": "", "OS-EXT-SRV-ATTR:ramdisk_id": "", "OS-EXT-SRV-ATTR:root_device_name": null, "OS-EXT-SRV-ATTR:user_data": "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", "OS-EXT-STS:task_state": "scheduling", "OS-EXT-STS:vm_state": "building", "OS-EXT-STS:power_state": 0, "os-extended-volumes:volumes_attached": [], "locked": false, "locked_reason": null, "description": null, "tags": [], "trusted_image_certificates": null, "server_groups": []}}
712s DEBUG (session:936) GET call to compute for https://nova.ps6.canonical.com:8774/v2.1/servers/f8950e84-104b-4497-96c0-4fd9019d6d7e used request id req-9b7a537a-f0a7-4ac6-ab67-b434ac5edcca
712s DEBUG (session:517) REQ: curl -g -i -X GET https://glance.ps6.canonical.com:9292/v2/images/4310160b-3912-43a6-9b37-357145536086 -H "Accept: application/json" -H "OpenStack-API-Version: compute 2.87" -H "User-Agent: python-novaclient" -H "X-Auth-Token: {SHA256}c94feb866867e840bb459d76ae13745a78da6325041f1d83392f5d207d8b2ff6" -H "X-OpenStack-Nova-API-Version: 2.87"
712s DEBUG (connectionpool:429) https://glance.ps6.canonical.com:9292 "GET /v2/images/4310160b-3912-43a6-9b37-357145536086 HTTP/1.1" 200 2294
712s DEBUG (session:548) RESP: [200] Connection: Keep-Alive Content-Length: 2294 Content-Type: application/json Date: Fri, 29 Nov 2024 21:19:54 GMT Keep-Alive: timeout=75, max=999 Server: Apache/2.4.52 (Ubuntu) X-Openstack-Request-Id: req-32f51983-e041-4119-b136-a3b14247d723
712s DEBUG (session:580) RESP BODY: {"architecture": "ppc64le", "base_image_ref": "fe0db2b7-58a0-4fc8-80f2-2de75285f410", "boot_roles": "reader,load-balancer_member,member", "content_id": "auto.sync", "hw_cdrom_bus": "scsi", "hw_disk_bus": "virtio", "hw_machine_type": "pseries", "hw_video_model": "vga", "hw_vif_model": "virtio", "image_location": "snapshot", "image_state": "available", "image_type": "snapshot", "instance_uuid": "98175da7-553d-407a-9745-ad804d5e62cd", "item_name": "disk1.img", "os_distro": "ubuntu", "os_version": "25.04", "owner_id": "623df63b80274c21bc79a0c35e68d615", "owner_project_name": "prod-proposed-migration-ppc64el_project", "owner_user_name": "prod-proposed-migration-ppc64el", "product_name": "com.ubuntu.cloud.daily:server:25.04:ppc64el", "simplestreams_metadata": "{\"aliases\": \"25.04,p,plucky,devel\", \"arch\": \"ppc64el\", \"ftype\": \"disk1.img\", \"label\": \"daily\", \"md5\": \"868c4a485be864f509a834d2ceda4d5a\", \"os\": \"ubuntu\", \"pubname\": \"ubuntu-plucky-daily-ppc64el-server-20241122\", \"release\": \"plucky\", \"release_codename\": \"P", "source_content_id": "com.ubuntu.cloud:daily:download", "user_id": "c871debdeffd4cb8b69ce618fc4aa361", "version_name": "20241122", "name": "adt/ubuntu-plucky-ppc64el-server-20241129.img", "disk_format": "qcow2", "container_format": "bare", "visibility": "private", "size": 2717908992, "virtual_size": 21474836480, "status": "active", "checksum": "60910889151d80fa91781373f13ea8f3", "protected": false, "min_ram": 0, "min_disk": 20, "owner": "623df63b80274c21bc79a0c35e68d615", "os_hidden": false, "os_hash_algo": "sha512", "os_hash_value": "1edbba326782242ba8691f1f814946e3c028441fb2decb1a490a60bcf873482df806d9c79a8a6544404da2b8e9cdfde2e5fa797bf83c91edf2a11bd6d6c2843f", "id": "4310160b-3912-43a6-9b37-357145536086", "created_at": "2024-11-29T06:32:16Z", "updated_at": "2024-11-29T06:32:44Z", "locations": [{"url": "rbd://eea9d068-c18c-11ed-8dc0-013aacb71b80/glance/4310160b-3912-43a6-9b37-357145536086/snap", "metadata": {"store": "ceph"}}], "direct_url": "rbd://eea9d068-c18c-11ed-8dc0-013aacb71b80/glance/4310160b-3912-43a6-9b37-357145536086/snap", "tags": [], "self": "/v2/images/4310160b-3912-43a6-9b37-357145536086", "file": "/v2/images/4310160b-3912-43a6-9b37-357145536086/file", "schema": "/v2/schemas/image", "stores": "ceph"}
712s DEBUG (session:936) GET call to image for https://glance.ps6.canonical.com:9292/v2/images/4310160b-3912-43a6-9b37-357145536086 used request id req-32f51983-e041-4119-b136-a3b14247d723
712s +--------------------------------------+-----------------------------------------------------------------------------------------------------------------------------------+
712s | Property                             | Value                                                                                                                             |
712s +--------------------------------------+-----------------------------------------------------------------------------------------------------------------------------------+
712s | OS-DCF:diskConfig                    | MANUAL                                                                                                                            |
712s | OS-EXT-AZ:availability_zone          |                                                                                                                                   |
712s | OS-EXT-SRV-ATTR:host                 | -                                                                                                                                 |
712s | OS-EXT-SRV-ATTR:hostname             | adt-plucky-ppc64el-htslib-20241129-211904-juju-7f2275-prod-prop                                                                   |
712s | OS-EXT-SRV-ATTR:hypervisor_hostname  | -                                                                                                                                 |
712s | OS-EXT-SRV-ATTR:instance_name        |                                                                                                                                   |
712s | OS-EXT-SRV-ATTR:kernel_id            |                                                                                                                                   |
712s | OS-EXT-SRV-ATTR:launch_index         | 0                                                                                                                                 |
712s | OS-EXT-SRV-ATTR:ramdisk_id           |                                                                                                                                   |
712s | OS-EXT-SRV-ATTR:reservation_id       | r-oz266b32                                                                                                                        |
712s | OS-EXT-SRV-ATTR:root_device_name     | -                                                                                                                                 |
712s | OS-EXT-STS:power_state               | 0                                                                                                                                 |
712s | OS-EXT-STS:task_state                | scheduling                                                                                                                        |
712s | OS-EXT-STS:vm_state                  | building                                                                                                                          |
712s | OS-SRV-USG:launched_at               | -                                                                                                                                 |
712s | OS-SRV-USG:terminated_at             | -                                                                                                                                 |
712s | accessIPv4                           |                                                                                                                                   |
712s | accessIPv6                           |                                                                                                                                   |
712s | adminPass                            | Mhp5a6BCmCK9                                                                                                                      |
712s | config_drive                         |                                                                                                                                   |
712s | created                              | 2024-11-29T21:19:54Z                                                                                                              |
712s | description                          | -                                                                                                                                 |
712s | flavor:disk                          | 20                                                                                                                                |
712s | flavor:ephemeral                     | 0                                                                                                                                 |
712s | flavor:extra_specs                   | {"aggregate_instance_extra_specs:commit": "builder-ppc64el", "hw_rng:allowed": "True"}                                            |
712s | flavor:original_name                 | autopkgtest-ppc64el                                                                                                               |
712s | flavor:ram                           | 4096                                                                                                                              |
712s | flavor:swap                          | 0                                                                                                                                 |
712s | flavor:vcpus                         | 2                                                                                                                                 |
712s | hostId                               |                                                                                                                                   |
712s | id                                   | f8950e84-104b-4497-96c0-4fd9019d6d7e                                                                                              |
712s | image                                | adt/ubuntu-plucky-ppc64el-server-20241129.img (4310160b-3912-43a6-9b37-357145536086)                                              |
712s | key_name                             | testbed-juju-7f2275-prod-proposed-migration-environment-20                                                                        |
712s | locked                               | False                                                                                                                             |
712s | locked_reason                        | -                                                                                                                                 |
712s | metadata                             | {}                                                                                                                                |
712s | name                                 | adt-plucky-ppc64el-htslib-20241129-211904-juju-7f2275-prod-proposed-migration-environment-20-0ca74b99-ef6e-43d6-9706-6668d4f93da1 |
712s | os-extended-volumes:volumes_attached | []                                                                                                                                |
712s | progress                             | 0                                                                                                                                 |
712s | security_groups                      | autopkgtest-juju-7f2275-prod-proposed-migration-environment-20@bos03-ppc64el-8.secgroup                                           |
712s | server_groups                        | []                                                                                                                                |
712s | status                               | BUILD                                                                                                                             |
712s | tags                                 | []                                                                                                                                |
712s | tenant_id                            | 623df63b80274c21bc79a0c35e68d615                                                                                                  |
712s | trusted_image_certificates           | -                                                                                                                                 |
712s | updated                              | 2024-11-29T21:19:54Z                                                                                                              |
712s | user_id                              | c871debdeffd4cb8b69ce618fc4aa361                                                                                                  |
712s +--------------------------------------+-----------------------------------------------------------------------------------------------------------------------------------+DEBUG (session:517) REQ: curl -g -i -X GET https://nova.ps6.canonical.com:8774/v2.1/servers/f8950e84-104b-4497-96c0-4fd9019d6d7e -H "Accept: application/json" -H "OpenStack-API-Version: compute 2.87" -H "User-Agent: python-novaclient" -H "X-Auth-Token: {SHA256}c94feb866867e840bb459d76ae13745a78da6325041f1d83392f5d207d8b2ff6" -H "X-OpenStack-Nova-API-Version: 2.87"
712s DEBUG (connectionpool:429) https://nova.ps6.canonical.com:8774 "GET /v2.1/servers/f8950e84-104b-4497-96c0-4fd9019d6d7e HTTP/1.1" 200 3198
712s DEBUG (session:548) RESP: [200] Connection: Keep-Alive Content-Length: 3198 Content-Type: application/json Date: Fri, 29 Nov 2024 21:19:54 GMT Keep-Alive: timeout=75, max=993 OpenStack-API-Version: compute 2.87 Server: Apache/2.4.52 (Ubuntu) Vary: OpenStack-API-Version,X-OpenStack-Nova-API-Version X-OpenStack-Nova-API-Version: 2.87 x-compute-request-id: req-e6044b10-4569-478b-9775-4ea205f23f12 x-openstack-request-id: req-e6044b10-4569-478b-9775-4ea205f23f12
712s DEBUG (session:580) RESP BODY: {"server": {"id": "f8950e84-104b-4497-96c0-4fd9019d6d7e", "name": "adt-plucky-ppc64el-htslib-20241129-211904-juju-7f2275-prod-proposed-migration-environment-20-0ca74b99-ef6e-43d6-9706-6668d4f93da1", "status": "BUILD", "tenant_id": "623df63b80274c21bc79a0c35e68d615", "user_id": "c871debdeffd4cb8b69ce618fc4aa361", "metadata": {}, "hostId": "", "image": {"id": "4310160b-3912-43a6-9b37-357145536086", "links": [{"rel": "bookmark", "href": "https://nova.ps6.canonical.com:8774/images/4310160b-3912-43a6-9b37-357145536086"}]}, "flavor": {"vcpus": 2, "ram": 4096, "disk": 20, "ephemeral": 0, "swap": 0, "original_name": "autopkgtest-ppc64el", "extra_specs": {"aggregate_instance_extra_specs:commit": "builder-ppc64el", "hw_rng:allowed": "True"}}, "created": "2024-11-29T21:19:54Z", "updated": "2024-11-29T21:19:54Z", "addresses": {}, "accessIPv4": "", "accessIPv6": "", "links": [{"rel": "self", "href": "https://nova.ps6.canonical.com:8774/v2.1/servers/f8950e84-104b-4497-96c0-4fd9019d6d7e"}, {"rel": "bookmark", "href": "https://nova.ps6.canonical.com:8774/servers/f8950e84-104b-4497-96c0-4fd9019d6d7e"}], "OS-DCF:diskConfig": "MANUAL", "progress": 0, "OS-EXT-AZ:availability_zone": "", "config_drive": "", "key_name": "testbed-juju-7f2275-prod-proposed-migration-environment-20", "OS-SRV-USG:launched_at": null, "OS-SRV-USG:terminated_at": null, "OS-EXT-SRV-ATTR:host": null, "OS-EXT-SRV-ATTR:instance_name": "", "OS-EXT-SRV-ATTR:hypervisor_hostname": null, "OS-EXT-SRV-ATTR:reservation_id": "r-oz266b32", "OS-EXT-SRV-ATTR:launch_index": 0, "OS-EXT-SRV-ATTR:hostname": "adt-plucky-ppc64el-htslib-20241129-211904-juju-7f2275-prod-prop", "OS-EXT-SRV-ATTR:kernel_id": "", "OS-EXT-SRV-ATTR:ramdisk_id": "", "OS-EXT-SRV-ATTR:root_device_name": null, "OS-EXT-SRV-ATTR:user_data": "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", "OS-EXT-STS:task_state": "scheduling", "OS-EXT-STS:vm_state": "building", "OS-EXT-STS:power_state": 0, "os-extended-volumes:volumes_attached": [], "locked": false, "locked_reason": null, "description": null, "tags": [], "trusted_image_certificates": null, "server_groups": []}}
712s DEBUG (session:936) GET call to compute for https://nova.ps6.canonical.com:8774/v2.1/servers/f8950e84-104b-4497-96c0-4fd9019d6d7e used request id req-e6044b10-4569-478b-9775-4ea205f23f12
712s 
712s 
712s 
Server building... 0% completeDEBUG (session:517) REQ: curl -g -i -X GET https://nova.ps6.canonical.com:8774/v2.1/servers/f8950e84-104b-4497-96c0-4fd9019d6d7e -H "Accept: application/json" -H "OpenStack-API-Version: compute 2.87" -H "User-Agent: python-novaclient" -H "X-Auth-Token: {SHA256}c94feb866867e840bb459d76ae13745a78da6325041f1d83392f5d207d8b2ff6" -H "X-OpenStack-Nova-API-Version: 2.87"
712s DEBUG (connectionpool:429) https://nova.ps6.canonical.com:8774 "GET /v2.1/servers/f8950e84-104b-4497-96c0-4fd9019d6d7e HTTP/1.1" 200 3325
712s DEBUG (session:548) RESP: [200] Connection: Keep-Alive Content-Length: 3325 Content-Type: application/json Date: Fri, 29 Nov 2024 21:20:00 GMT Keep-Alive: timeout=75, max=992 OpenStack-API-Version: compute 2.87 Server: Apache/2.4.52 (Ubuntu) Vary: OpenStack-API-Version,X-OpenStack-Nova-API-Version X-OpenStack-Nova-API-Version: 2.87 x-compute-request-id: req-52a8b38f-d188-4a18-b595-1e541e0c0a22 x-openstack-request-id: req-52a8b38f-d188-4a18-b595-1e541e0c0a22
712s DEBUG (session:580) RESP BODY: {"server": {"id": "f8950e84-104b-4497-96c0-4fd9019d6d7e", "name": "adt-plucky-ppc64el-htslib-20241129-211904-juju-7f2275-prod-proposed-migration-environment-20-0ca74b99-ef6e-43d6-9706-6668d4f93da1", "status": "ERROR", "tenant_id": "623df63b80274c21bc79a0c35e68d615", "user_id": "c871debdeffd4cb8b69ce618fc4aa361", "metadata": {}, "hostId": "", "image": {"id": "4310160b-3912-43a6-9b37-357145536086", "links": [{"rel": "bookmark", "href": "https://nova.ps6.canonical.com:8774/images/4310160b-3912-43a6-9b37-357145536086"}]}, "flavor": {"vcpus": 2, "ram": 4096, "disk": 20, "ephemeral": 0, "swap": 0, "original_name": "autopkgtest-ppc64el", "extra_specs": {"aggregate_instance_extra_specs:commit": "builder-ppc64el", "hw_rng:allowed": "True"}}, "created": "2024-11-29T21:19:54Z", "updated": "2024-11-29T21:19:55Z", "addresses": {}, "accessIPv4": "", "accessIPv6": "", "links": [{"rel": "self", "href": "https://nova.ps6.canonical.com:8774/v2.1/servers/f8950e84-104b-4497-96c0-4fd9019d6d7e"}, {"rel": "bookmark", "href": "https://nova.ps6.canonical.com:8774/servers/f8950e84-104b-4497-96c0-4fd9019d6d7e"}], "OS-DCF:diskConfig": "MANUAL", "fault": {"code": 500, "created": "2024-11-29T21:19:55Z", "message": "No valid host was found. There are not enough hosts available."}, "OS-EXT-AZ:availability_zone": "", "config_drive": "", "key_name": "testbed-juju-7f2275-prod-proposed-migration-environment-20", "OS-SRV-USG:launched_at": null, "OS-SRV-USG:terminated_at": null, "OS-EXT-SRV-ATTR:host": null, "OS-EXT-SRV-ATTR:instance_name": "instance-0006e0c6", "OS-EXT-SRV-ATTR:hypervisor_hostname": null, "OS-EXT-SRV-ATTR:reservation_id": "r-oz266b32", "OS-EXT-SRV-ATTR:launch_index": 0, "OS-EXT-SRV-ATTR:hostname": "adt-plucky-ppc64el-htslib-20241129-211904-juju-7f2275-prod-prop", "OS-EXT-SRV-ATTR:kernel_id": "", "OS-EXT-SRV-ATTR:ramdisk_id": "", "OS-EXT-SRV-ATTR:root_device_name": null, "OS-EXT-SRV-ATTR:user_data": "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", "OS-EXT-STS:task_state": null, "OS-EXT-STS:vm_state": "error", "OS-EXT-STS:power_state": 0, "os-extended-volumes:volumes_attached": [], "locked": false, "locked_reason": null, "description": null, "tags": [], "trusted_image_certificates": null, "server_groups": []}}
712s DEBUG (session:936) GET call to compute for https://nova.ps6.canonical.com:8774/v2.1/servers/f8950e84-104b-4497-96c0-4fd9019d6d7e used request id req-52a8b38f-d188-4a18-b595-1e541e0c0a22
712s DEBUG (shell:822) <Server: adt-plucky-ppc64el-htslib-20241129-211904-juju-7f2275-prod-proposed-migration-environment-20-0ca74b99-ef6e-43d6-9706-6668d4f93da1>
712s Traceback (most recent call last):
712s   File "/usr/lib/python3/dist-packages/novaclient/shell.py", line 820, in main
712s     OpenStackComputeShell().main(argv)
712s   File "/usr/lib/python3/dist-packages/novaclient/shell.py", line 742, in main
712s     args.func(self.cs, args)
712s   File "/usr/lib/python3/dist-packages/novaclient/v2/shell.py", line 980, in do_boot
712s     _poll_for_status(cs.servers.get, server.id, 'building', ['active'])
712s   File "/usr/lib/python3/dist-packages/novaclient/v2/shell.py", line 1019, in _poll_for_status
712s     raise exceptions.ResourceInErrorState(obj)
712s novaclient.exceptions.ResourceInErrorState: <Server: adt-plucky-ppc64el-htslib-20241129-211904-juju-7f2275-prod-proposed-migration-environment-20-0ca74b99-ef6e-43d6-9706-6668d4f93da1>
712s ERROR (ResourceInErrorState): <Server: adt-plucky-ppc64el-htslib-20241129-211904-juju-7f2275-prod-proposed-migration-environment-20-0ca74b99-ef6e-43d6-9706-6668d4f93da1>
712s 
712s Error building server
712s nova [E] nova boot failed (attempt #1):
712s nova [E] DEBUG (extension:189) found extension EntryPoint.parse('v1password = swiftclient.authv1:PasswordLoader')
712s DEBUG (extension:189) found extension EntryPoint.parse('noauth = cinderclient.contrib.noauth:CinderNoAuthLoader')
712s DEBUG (extension:189) found extension EntryPoint.parse('admin_token = keystoneauth1.loading._plugins.admin_token:AdminToken')
712s DEBUG (extension:189) found extension EntryPoint.parse('none = keystoneauth1.loading._plugins.noauth:NoAuth')
712s DEBUG (extension:189) found extension EntryPoint.parse('password = keystoneauth1.loading._plugins.identity.generic:Password')
712s DEBUG (extension:189) found extension EntryPoint.parse('token = keystoneauth1.loading._plugins.identity.generic:Token')
712s DEBUG (extension:189) found extension EntryPoint.parse('v2password = keystoneauth1.loading._plugins.identity.v2:Password')
712s DEBUG (extension:189) found extension EntryPoint.parse('v2token = keystoneauth1.loading._plugins.identity.v2:Token')
712s DEBUG (extension:189) found extension EntryPoint.parse('v3adfspassword = keystoneauth1.extras._saml2._loading:ADFSPassword')
712s DEBUG (extension:189) found extension EntryPoint.parse('v3applicationcredential = keystoneauth1.loading._plugins.identity.v3:ApplicationCredential')
712s DEBUG (extension:189) found extension EntryPoint.parse('v3fedkerb = keystoneauth1.extras.kerberos._loading:MappedKerberos')
712s DEBUG (extension:189) found extension EntryPoint.parse('v3kerberos = keystoneauth1.extras.kerberos._loading:Kerberos')
712s DEBUG (extension:189) found extension EntryPoint.parse('v3multifactor = keystoneauth1.loading._plugins.identity.v3:MultiFactor')
712s DEBUG (extension:189) found extension EntryPoint.parse('v3oauth1 = keystoneauth1.extras.oauth1._loading:V3OAuth1')
712s DEBUG (extension:189) found extension EntryPoint.parse('v3oidcaccesstoken = keystoneauth1.loading._plugins.identity.v3:OpenIDConnectAccessToken')
712s DEBUG (extension:189) found extension EntryPoint.parse('v3oidcauthcode = keystoneauth1.loading._plugins.identity.v3:OpenIDConnectAuthorizationCode')
712s DEBUG (extension:189) found extension EntryPoint.parse('v3oidcclientcredentials = keystoneauth1.loading._plugins.identity.v3:OpenIDConnectClientCredentials')
712s DEBUG (extension:189) found extension EntryPoint.parse('v3oidcpassword = keystoneauth1.loading._plugins.identity.v3:OpenIDConnectPassword')
712s DEBUG (extension:189) found extension EntryPoint.parse('v3password = keystoneauth1.loading._plugins.identity.v3:Password')
712s DEBUG (extension:189) found extension EntryPoint.parse('v3samlpassword = keystoneauth1.extras._saml2._loading:Saml2Password')
712s DEBUG (extension:189) found extension EntryPoint.parse('v3token = keystoneauth1.loading._plugins.identity.v3:Token')
712s DEBUG (extension:189) found extension EntryPoint.parse('v3tokenlessauth = keystoneauth1.loading._plugins.identity.v3:TokenlessAuth')
712s DEBUG (extension:189) found extension EntryPoint.parse('v3totp = keystoneauth1.loading._plugins.identity.v3:TOTP')
712s DEBUG (session:517) REQ: curl -g -i -X GET https://keystone.ps6.canonical.com:5000/v3 -H "Accept: application/json" -H "User-Agent: nova keystoneauth1/4.0.0 python-requests/2.22.0 CPython/3.8.10"
712s DEBUG (connectionpool:962) Starting new HTTPS connection (1): keystone.ps6.canonical.com:5000
712s DEBUG (connectionpool:429) https://keystone.ps6.canonical.com:5000 "GET /v3 HTTP/1.1" 200 267
712s DEBUG (session:548) RESP: [200] Connection: Keep-Alive Content-Length: 267 Content-Type: application/json Date: Fri, 29 Nov 2024 21:25:03 GMT Keep-Alive: timeout=75, max=1000 Server: Apache/2.4.52 (Ubuntu) Vary: X-Auth-Token x-openstack-request-id: req-df8a7120-f8b8-4304-b8d3-70998e5b45a1
712s DEBUG (session:580) RESP BODY: {"version": {"id": "v3.14", "status": "stable", "updated": "2020-04-07T00:00:00Z", "links": [{"rel": "self", "href": "https://keystone.ps6.canonical.com:5000/v3/"}], "media-types": [{"base": "application/json", "type": "application/vnd.openstack.identity-v3+json"}]}}
712s DEBUG (session:946) GET call to https://keystone.ps6.canonical.com:5000/v3 used request id req-df8a7120-f8b8-4304-b8d3-70998e5b45a1
712s DEBUG (base:182) Making authentication request to https://keystone.ps6.canonical.com:5000/v3/auth/tokens
712s DEBUG (connectionpool:429) https://keystone.ps6.canonical.com:5000 "POST /v3/auth/tokens HTTP/1.1" 201 12525
712s DEBUG (base:187) {"token": {"methods": ["password"], "user": {"domain": {"id": "default", "name": "Default"}, "id": "c871debdeffd4cb8b69ce618fc4aa361", "name": "prod-proposed-migration-ppc64el", "password_expires_at": null}, "audit_ids": ["ZrgHkMhyRiSs-7apKGu7AQ"], "expires_at": "2024-11-30T21:25:03.000000Z", "issued_at": "2024-11-29T21:25:03.000000Z", "project": {"domain": {"id": "default", "name": "Default"}, "id": "623df63b80274c21bc79a0c35e68d615", "name": "prod-proposed-migration-ppc64el_project"}, "is_domain": false, "roles": [{"id": "86bf3043974746c2bf52c2a9f362f986", "name": "reader"}, {"id": "80674fb26dab46e9a6bd57e7f8193360", "name": "load-balancer_member"}, {"id": "15cf997650e345b7b21c02b5cdb7d84a", "name": "member"}], "is_admin_project": false, "catalog": [{"endpoints": [{"id": "213cdf38198c4581bd5b7d6d0836923b", "interface": "internal", "region_id": "prodstack6", "url": "https://radosgw-internal.ps6.canonical.com:443/", "region": "prodstack6"}, {"id": "67061eee26944a1a8009f9d07be19738", "interface": "public", "region_id": "prodstack6", "url": "https://radosgw.ps6.canonical.com:443/", "region": "prodstack6"}, {"id": "fc88c52c749a47d08a24a2c7efbde01b", "interface": "admin", "region_id": "prodstack6", "url": "https://radosgw-admin.ps6.canonical.com:443/", "region": "prodstack6"}], "id": "06e4714942634054bf9aa11715312b4e", "type": "s3", "name": "s3"}, {"endpoints": [{"id": "8aa44c94b63746bd9b37f1008ad55fa8", "interface": "admin", "region_id": "prodstack6", "url": "https://aodh-admin.ps6.canonical.com:8042", "region": "prodstack6"}, {"id": "92cf08a80a0242ebbca8ec893cf332b1", "interface": "public", "region_id": "prodstack6", "url": "https://aodh.ps6.canonical.com:8042", "region": "prodstack6"}, {"id": "d8139c6e11ae4edcb78981c12bd53212", "interface": "internal", "region_id": "prodstack6", "url": "https://aodh-internal.ps6.canonical.com:8042", "region": "prodstack6"}], "id": "2fb939b0b969435c8f0c5fa4edb4de94", "type": "alarming", "name": "aodh"}, {"endpoints": [{"id": "a49fcc80e658411885f88cdd8432a571", "interface": "internal", "region_id": "prodstack6", "url": "https://heat-internal.ps6.canonical.com:8000/v1", "region": "prodstack6"}, {"id": "b23866fddba8415885b06c064c34b94b", "interface": "public", "region_id": "prodstack6", "url": "https://heat.ps6.canonical.com:8000/v1", "region": "prodstack6"}, {"id": "f84ae55197f94b8392a678f35c82ca26", "interface": "admin", "region_id": "prodstack6", "url": "https://heat-admin.ps6.canonical.com:8000/v1", "region": "prodstack6"}], "id": "3d4b59f7dab644b2b527e8e96b697545", "type": "cloudformation", "name": "heat-cfn"}, {"endpoints": [{"id": "2e0143334c6241169f45f1c11970c6bc", "interface": "public", "region_id": "prodstack6", "url": "https://heat.ps6.canonical.com:8004/v1/623df63b80274c21bc79a0c35e68d615", "region": "prodstack6"}, {"id": "5e19c32243c04a3faf1e5f9ab900c260", "interface": "internal", "region_id": "prodstack6", "url": "https://heat-internal.ps6.canonical.com:8004/v1/623df63b80274c21bc79a0c35e68d615", "region": "prodstack6"}, {"id": "b3fc5c88ec8543a691fec75726b86967", "interface": "admin", "region_id": "prodstack6", "url": "https://heat-admin.ps6.canonical.com:8004/v1/623df63b80274c21bc79a0c35e68d615", "region": "prodstack6"}], "id": "43b926205044476b8093b18d8ce0a9e4", "type": "orchestration", "name": "heat"}, {"endpoints": [{"id": "a47569b96e5b4146a312e4673504557c", "interface": "public", "region_id": "prodstack6", "url": "https://glance.ps6.canonical.com:9292", "region": "prodstack6"}, {"id": "bba35c4ab04f4114a2a34e65568537bd", "interface": "internal", "region_id": "prodstack6", "url": "https://glance-internal.ps6.canonical.com:9292", "region": "prodstack6"}, {"id": "ef769f1117c74a62a279131486c89628", "interface": "admin", "region_id": "prodstack6", "url": "https://glance-admin.ps6.canonical.com:9292", "region": "prodstack6"}], "id": "49de724549524bd78e9cd46a4477226f", "type": "image", "name": "glance"}, {"endpoints": [{"id": "a1a41e9a1e2d42e5b6cd5380cd1e21bf", "interface": "admin", "region_id": "prodstack6", "url": "https://cinder-admin.ps6.canonical.com:8776/v3/623df63b80274c21bc79a0c35e68d615", "region": "prodstack6"}, {"id": "d2309a99724b4111827482c68a832c0c", "interface": "public", "region_id": "prodstack6", "url": "https://cinder.ps6.canonical.com:8776/v3/623df63b80274c21bc79a0c35e68d615", "region": "prodstack6"}, {"id": "f8a02e3949ff42afa772eb5e74dbef9f", "interface": "internal", "region_id": "prodstack6", "url": "https://cinder-internal.ps6.canonical.com:8776/v3/623df63b80274c21bc79a0c35e68d615", "region": "prodstack6"}], "id": "5bf6578a631349e3af4bf36d7adb18e1", "type": "volumev3", "name": "cinderv3"}, {"endpoints": [{"id": "01d84128f36444e9b01549b86bd69116", "interface": "admin", "region_id": "prodstack6", "url": "https://barbican-admin.ps6.canonical.com:9312", "region": "prodstack6"}, {"id": "0ce4a8777e0b40a88f7fc0f77e34a605", "interface": "public", "region_id": "prodstack6", "url": "https://barbican.ps6.canonical.com:9311", "region": "prodstack6"}, {"id": "f507ba49e4a7435cb330234217c92449", "interface": "internal", "region_id": "prodstack6", "url": "https://barbican-internal.ps6.canonical.com:9311", "region": "prodstack6"}], "id": "62cb1c3d9f6c45979c13516a6b3ff114", "type": "key-manager", "name": "barbican"}, {"endpoints": [{"id": "3cb6121bd8f14da8aa2fba7be823a2b4", "interface": "internal", "region_id": "prodstack6", "url": "https://neutron-internal.ps6.canonical.com:9696", "region": "prodstack6"}, {"id": "46ba11d133fe4e8f9e8f9097ba737682", "interface": "admin", "region_id": "prodstack6", "url": "https://neutron-admin.ps6.canonical.com:9696", "region": "prodstack6"}, {"id": "d872eb6aa23d40009165aa3dcdce3948", "interface": "public", "region_id": "prodstack6", "url": "https://neutron.ps6.canonical.com:9696", "region": "prodstack6"}], "id": "759cb6fdfbc146dd8b9d1ba444c4b9db", "type": "network", "name": "neutron"}, {"endpoints": [{"id": "4349d565f72446da9699269f85df5e8b", "interface": "internal", "region_id": "prodstack6", "url": "https://manila-internal.ps6.canonical.com:8786/v2/623df63b80274c21bc79a0c35e68d615", "region": "prodstack6"}, {"id": "a483dcc58f5e415e9ec739c94474e609", "interface": "public", "region_id": "prodstack6", "url": "https://manila.ps6.canonical.com:8786/v2/623df63b80274c21bc79a0c35e68d615", "region": "prodstack6"}, {"id": "c1f14236723e42878562d8dd63d5a6a0", "interface": "admin", "region_id": "prodstack6", "url": "https://manila-admin.ps6.canonical.com:8786/v2/623df63b80274c21bc79a0c35e68d615", "region": "prodstack6"}], "id": "93fc4008035946deb1f433c2dd905a5d", "type": "sharev2", "name": "manilav2"}, {"endpoints": [{"id": "0fa148793c7249c8b187b6b4ff425731", "interface": "internal", "region_id": "prodstack6", "url": "https://radosgw-internal.ps6.canonical.com:443/swift/v1/AUTH_e4b04ca58d734ed0aa29e306adad4f79/simplestreams/data", "region": "prodstack6"}, {"id": "555ade266a6b4bcc81b6e5abf607aec5", "interface": "public", "region_id": "prodstack6", "url": "https://radosgw.ps6.canonical.com:443/swift/v1/AUTH_e4b04ca58d734ed0aa29e306adad4f79/simplestreams/data", "region": "prodstack6"}, {"id": "7dad1a7b1552465686424fc014463173", "interface": "admin", "region_id": "prodstack6", "url": "https://radosgw-admin.ps6.canonical.com:443/swift/simplestreams/data", "region": "prodstack6"}], "id": "977dd359af1a4fcc91a9daf4dc33b0f3", "type": "product-streams", "name": "image-stream"}, {"endpoints": [{"id": "12d30eabcdec4831bd15273d55b1cbab", "interface": "internal", "region_id": "prodstack6", "url": "https://manila-internal.ps6.canonical.com:8786/v1/623df63b80274c21bc79a0c35e68d615", "region": "prodstack6"}, {"id": "29d35b2b483346479f1ff1a13604d50e", "interface": "admin", "region_id": "prodstack6", "url": "https://manila-admin.ps6.canonical.com:8786/v1/623df63b80274c21bc79a0c35e68d615", "region": "prodstack6"}, {"id": "4aa1422b8f5945d8aed9ba6a8d670e5c", "interface": "public", "region_id": "prodstack6", "url": "https://manila.ps6.canonical.com:8786/v1/623df63b80274c21bc79a0c35e68d615", "region": "prodstack6"}], "id": "ac5e4f28fa794cde99f1d7ffc1b664e5", "type": "share", "name": "manila"}, {"endpoints": [{"id": "c7db93d54a684d8caeae1d9e18a59118", "interface": "admin", "region_id": "prodstack6", "url": "https://nova-admin.ps6.canonical.com:8774/v2.1", "region": "prodstack6"}, {"id": "dd7a796f401b477f9f1b5bbc05747d8d", "interface": "public", "region_id": "prodstack6", "url": "https://nova.ps6.canonical.com:8774/v2.1", "region": "prodstack6"}, {"id": "e7ecb038d830462ea67b0b463af5e013", "interface": "internal", "region_id": "prodstack6", "url": "https://nova-internal.ps6.canonical.com:8774/v2.1", "region": "prodstack6"}], "id": "b4519af08e174d4a8333a2d14ac3ba3b", "type": "compute", "name": "nova"}, {"endpoints": [{"id": "02ef5b6154934ffd97d8b5b8e4d70d2a", "interface": "internal", "region_id": "prodstack6", "url": "https://radosgw-internal.ps6.canonical.com:443/swift/v1/AUTH_623df63b80274c21bc79a0c35e68d615", "region": "prodstack6"}, {"id": "2741abe526e94842a4fa801423ba1ef0", "interface": "public", "region_id": "prodstack6", "url": "https://radosgw.ps6.canonical.com:443/swift/v1/AUTH_623df63b80274c21bc79a0c35e68d615", "region": "prodstack6"}, {"id": "3742f9406c604516933d6fd8c29e0880", "interface": "admin", "region_id": "prodstack6", "url": "https://radosgw-admin.ps6.canonical.com:443/swift", "region": "prodstack6"}], "id": "c7f07a7b3b3c408c96200dfd1d1a0f6f", "type": "object-store", "name": "swift"}, {"endpoints": [{"id": "06d4ed6c160a43f2b7fa7f80ad1dc709", "interface": "internal", "region_id": "prodstack6", "url": "https://designate-internal.ps6.canonical.com:9001", "region": "prodstack6"}, {"id": "1e240624a50c4ca0aaa6ef63cbc94f1b", "interface": "admin", "region_id": "prodstack6", "url": "https://designate-admin.ps6.canonical.com:9001", "region": "prodstack6"}, {"id": "f94d7d17997a43fd9c63b34c43301c6e", "interface": "public", "region_id": "prodstack6", "url": "https://designate.ps6.canonical.com:9001", "region": "prodstack6"}], "id": "cf82013d63844fedbe96bcacb6bd1fef", "type": "dns", "name": "designate"}, {"endpoints": [{"id": "4a688340be464710bfa60bf3f88f41c4", "interface": "admin", "region_id": "prodstack6", "url": "https://gnocchi-admin.ps6.canonical.com:8041", "region": "prodstack6"}, {"id": "a5a95506c96d4716adb4efc3ac9051be", "interface": "public", "region_id": "prodstack6", "url": "https://gnocchi.ps6.canonical.com:8041", "region": "prodstack6"}, {"id": "eebc17a086834f8fa8bb6b35c8061a8c", "interface": "internal", "region_id": "prodstack6", "url": "https://gnocchi-internal.ps6.canonical.com:8041", "region": "prodstack6"}], "id": "d10589e854a446a5b852593f33f170a7", "type": "metric", "name": "gnocchi"}, {"endpoints": [{"id": "08f66df28d0f47f3bec12f29e06d85ac", "interface": "admin", "region_id": "prodstack6", "url": "https://keystone-admin.ps6.canonical.com:35357/v3", "region": "prodstack6"}, {"id": "46d270b45ceb42db902f4d241afa6a70", "interface": "public", "region_id": "prodstack6", "url": "https://keystone.ps6.canonical.com:5000/v3", "region": "prodstack6"}, {"id": "a4addee11d9349cfa46ec6660dbad947", "interface": "internal", "region_id": "prodstack6", "url": "https://keystone-internal.ps6.canonical.com:5000/v3", "region": "prodstack6"}], "id": "deb38a775a9b4e87a8de9e3eed779882", "type": "identity", "name": "keystone"}, {"endpoints": [{"id": "18b4af5f40664babb94e884c6a53ccf3", "interface": "admin", "region_id": "prodstack6", "url": "https://octavia-admin.ps6.canonical.com:9876", "region": "prodstack6"}, {"id": "2b6f7ba7f9944ee1aebd6dccc5223b2d", "interface": "internal", "region_id": "prodstack6", "url": "https://octavia-internal.ps6.canonical.com:9876", "region": "prodstack6"}, {"id": "5e3012e9c79e4890be4d964b6208f5c6", "interface": "public", "region_id": "prodstack6", "url": "https://octavia.ps6.canonical.com:9876", "region": "prodstack6"}], "id": "e00337be20d54948b66a1c3109b885c6", "type": "load-balancer", "name": "octavia"}, {"endpoints": [{"id": "2d2942b35f3041389ad810f679d02f22", "interface": "public", "region_id": "prodstack6", "url": "https://placement.ps6.canonical.com:8778", "region": "prodstack6"}, {"id": "2e3beaac7ac14284b72e2592820ad725", "interface": "admin", "region_id": "prodstack6", "url": "https://placement-admin.ps6.canonical.com:8778", "region": "prodstack6"}, {"id": "91060f6df9ae444f81808adf40540d94", "interface": "internal", "region_id": "prodstack6", "url": "https://placement-internal.ps6.canonical.com:8778", "region": "prodstack6"}], "id": "edc6e37f154f4c0ab3dd4d52b82bf873", "type": "placement", "name": "placement"}]}}
712s REQ: curl -g -i -X GET https://nova.ps6.canonical.com:8774/v2.1 -H "Accept: application/json" -H "User-Agent: python-novaclient" -H "X-Auth-Token: {SHA256}0769597da71b697ad99512361ba83dfd160ae3313ab3af85f3a85fe5165df333"
712s DEBUG (session:517) REQ: curl -g -i -X GET https://nova.ps6.canonical.com:8774/v2.1 -H "Accept: application/json" -H "User-Agent: python-novaclient" -H "X-Auth-Token: {SHA256}0769597da71b697ad99512361ba83dfd160ae3313ab3af85f3a85fe5165df333"
712s DEBUG (connectionpool:962) Starting new HTTPS connection (1): nova.ps6.canonical.com:8774
712s DEBUG (connectionpool:429) https://nova.ps6.canonical.com:8774 "GET /v2.1 HTTP/1.1" 302 0
712s RESP: [302] Connection: Keep-Alive Content-Length: 0 Content-Type: text/plain; charset=utf8 Date: Fri, 29 Nov 2024 21:25:04 GMT Keep-Alive: timeout=75, max=1000 Location: https://nova.ps6.canonical.com:8774/v2.1/ Server: Apache/2.4.52 (Ubuntu) x-compute-request-id: req-43016d5e-31cf-460c-a261-d9e23dc723a3 x-openstack-request-id: req-43016d5e-31cf-460c-a261-d9e23dc723a3
712s DEBUG (session:548) RESP: [302] Connection: Keep-Alive Content-Length: 0 Content-Type: text/plain; charset=utf8 Date: Fri, 29 Nov 2024 21:25:04 GMT Keep-Alive: timeout=75, max=1000 Location: https://nova.ps6.canonical.com:8774/v2.1/ Server: Apache/2.4.52 (Ubuntu) x-compute-request-id: req-43016d5e-31cf-460c-a261-d9e23dc723a3 x-openstack-request-id: req-43016d5e-31cf-460c-a261-d9e23dc723a3
712s RESP BODY: Omitted, Content-Type is set to text/plain; charset=utf8. Only application/json responses have their bodies logged.
712s DEBUG (session:580) RESP BODY: Omitted, Content-Type is set to text/plain; charset=utf8. Only application/json responses have their bodies logged.
712s DEBUG (connectionpool:429) https://nova.ps6.canonical.com:8774 "GET /v2.1/ HTTP/1.1" 200 397
712s RESP: [200] Connection: Keep-Alive Content-Length: 397 Content-Type: application/json Date: Fri, 29 Nov 2024 21:25:04 GMT Keep-Alive: timeout=75, max=999 OpenStack-API-Version: compute 2.1 Server: Apache/2.4.52 (Ubuntu) Vary: OpenStack-API-Version,X-OpenStack-Nova-API-Version X-OpenStack-Nova-API-Version: 2.1 x-compute-request-id: req-4ee0e5aa-3304-4c57-91b7-298f42b2bcec x-openstack-request-id: req-4ee0e5aa-3304-4c57-91b7-298f42b2bcec
712s DEBUG (session:548) RESP: [200] Connection: Keep-Alive Content-Length: 397 Content-Type: application/json Date: Fri, 29 Nov 2024 21:25:04 GMT Keep-Alive: timeout=75, max=999 OpenStack-API-Version: compute 2.1 Server: Apache/2.4.52 (Ubuntu) Vary: OpenStack-API-Version,X-OpenStack-Nova-API-Version X-OpenStack-Nova-API-Version: 2.1 x-compute-request-id: req-4ee0e5aa-3304-4c57-91b7-298f42b2bcec x-openstack-request-id: req-4ee0e5aa-3304-4c57-91b7-298f42b2bcec
712s RESP BODY: {"version": {"id": "v2.1", "status": "CURRENT", "version": "2.90", "min_version": "2.1", "updated": "2013-07-23T11:33:21Z", "links": [{"rel": "self", "href": "https://nova.ps6.canonical.com:8774/v2.1/"}, {"rel": "describedby", "type": "text/html", "href": "http://docs.openstack.org/"}], "media-types": [{"base": "application/json", "type": "application/vnd.openstack.compute+json;version=2.1"}]}}
712s DEBUG (session:580) RESP BODY: {"version": {"id": "v2.1", "status": "CURRENT", "version": "2.90", "min_version": "2.1", "updated": "2013-07-23T11:33:21Z", "links": [{"rel": "self", "href": "https://nova.ps6.canonical.com:8774/v2.1/"}, {"rel": "describedby", "type": "text/html", "href": "http://docs.openstack.org/"}], "media-types": [{"base": "application/json", "type": "application/vnd.openstack.compute+json;version=2.1"}]}}
712s GET call to compute for https://nova.ps6.canonical.com:8774/v2.1/ used request id req-4ee0e5aa-3304-4c57-91b7-298f42b2bcec
712s DEBUG (session:936) GET call to compute for https://nova.ps6.canonical.com:8774/v2.1/ used request id req-4ee0e5aa-3304-4c57-91b7-298f42b2bcec
712s DEBUG (extension:189) found extension EntryPoint.parse('v1password = swiftclient.authv1:PasswordLoader')
712s DEBUG (extension:189) found extension EntryPoint.parse('noauth = cinderclient.contrib.noauth:CinderNoAuthLoader')
712s DEBUG (extension:189) found extension EntryPoint.parse('admin_token = keystoneauth1.loading._plugins.admin_token:AdminToken')
712s DEBUG (extension:189) found extension EntryPoint.parse('none = keystoneauth1.loading._plugins.noauth:NoAuth')
712s DEBUG (extension:189) found extension EntryPoint.parse('password = keystoneauth1.loading._plugins.identity.generic:Password')
712s DEBUG (extension:189) found extension EntryPoint.parse('token = keystoneauth1.loading._plugins.identity.generic:Token')
712s DEBUG (extension:189) found extension EntryPoint.parse('v2password = keystoneauth1.loading._plugins.identity.v2:Password')
712s DEBUG (extension:189) found extension EntryPoint.parse('v2token = keystoneauth1.loading._plugins.identity.v2:Token')
712s DEBUG (extension:189) found extension EntryPoint.parse('v3adfspassword = keystoneauth1.extras._saml2._loading:ADFSPassword')
712s DEBUG (extension:189) found extension EntryPoint.parse('v3applicationcredential = keystoneauth1.loading._plugins.identity.v3:ApplicationCredential')
712s DEBUG (extension:189) found extension EntryPoint.parse('v3fedkerb = keystoneauth1.extras.kerberos._loading:MappedKerberos')
712s DEBUG (extension:189) found extension EntryPoint.parse('v3kerberos = keystoneauth1.extras.kerberos._loading:Kerberos')
712s DEBUG (extension:189) found extension EntryPoint.parse('v3multifactor = keystoneauth1.loading._plugins.identity.v3:MultiFactor')
712s DEBUG (extension:189) found extension EntryPoint.parse('v3oauth1 = keystoneauth1.extras.oauth1._loading:V3OAuth1')
712s DEBUG (extension:189) found extension EntryPoint.parse('v3oidcaccesstoken = keystoneauth1.loading._plugins.identity.v3:OpenIDConnectAccessToken')
712s DEBUG (extension:189) found extension EntryPoint.parse('v3oidcauthcode = keystoneauth1.loading._plugins.identity.v3:OpenIDConnectAuthorizationCode')
712s DEBUG (extension:189) found extension EntryPoint.parse('v3oidcclientcredentials = keystoneauth1.loading._plugins.identity.v3:OpenIDConnectClientCredentials')
712s DEBUG (extension:189) found extension EntryPoint.parse('v3oidcpassword = keystoneauth1.loading._plugins.identity.v3:OpenIDConnectPassword')
712s DEBUG (extension:189) found extension EntryPoint.parse('v3password = keystoneauth1.loading._plugins.identity.v3:Password')
712s DEBUG (extension:189) found extension EntryPoint.parse('v3samlpassword = keystoneauth1.extras._saml2._loading:Saml2Password')
712s DEBUG (extension:189) found extension EntryPoint.parse('v3token = keystoneauth1.loading._plugins.identity.v3:Token')
712s DEBUG (extension:189) found extension EntryPoint.parse('v3tokenlessauth = keystoneauth1.loading._plugins.identity.v3:TokenlessAuth')
712s DEBUG (extension:189) found extension EntryPoint.parse('v3totp = keystoneauth1.loading._plugins.identity.v3:TOTP')
712s DEBUG (session:517) REQ: curl -g -i -X GET https://glance.ps6.canonical.com:9292/v2/images/4310160b-3912-43a6-9b37-357145536086 -H "Accept: application/json" -H "OpenStack-API-Version: compute 2.87" -H "User-Agent: python-novaclient" -H "X-Auth-Token: {SHA256}0769597da71b697ad99512361ba83dfd160ae3313ab3af85f3a85fe5165df333" -H "X-OpenStack-Nova-API-Version: 2.87"
712s DEBUG (connectionpool:962) Starting new HTTPS connection (1): glance.ps6.canonical.com:9292
712s DEBUG (connectionpool:429) https://glance.ps6.canonical.com:9292 "GET /v2/images/4310160b-3912-43a6-9b37-357145536086 HTTP/1.1" 200 2294
712s DEBUG (session:548) RESP: [200] Connection: Keep-Alive Content-Length: 2294 Content-Type: application/json Date: Fri, 29 Nov 2024 21:25:04 GMT Keep-Alive: timeout=75, max=1000 Server: Apache/2.4.52 (Ubuntu) X-Openstack-Request-Id: req-28f9e5b7-775b-46a0-8303-e2bd573942db
712s DEBUG (session:580) RESP BODY: {"architecture": "ppc64le", "base_image_ref": "fe0db2b7-58a0-4fc8-80f2-2de75285f410", "boot_roles": "reader,load-balancer_member,member", "content_id": "auto.sync", "hw_cdrom_bus": "scsi", "hw_disk_bus": "virtio", "hw_machine_type": "pseries", "hw_video_model": "vga", "hw_vif_model": "virtio", "image_location": "snapshot", "image_state": "available", "image_type": "snapshot", "instance_uuid": "98175da7-553d-407a-9745-ad804d5e62cd", "item_name": "disk1.img", "os_distro": "ubuntu", "os_version": "25.04", "owner_id": "623df63b80274c21bc79a0c35e68d615", "owner_project_name": "prod-proposed-migration-ppc64el_project", "owner_user_name": "prod-proposed-migration-ppc64el", "product_name": "com.ubuntu.cloud.daily:server:25.04:ppc64el", "simplestreams_metadata": "{\"aliases\": \"25.04,p,plucky,devel\", \"arch\": \"ppc64el\", \"ftype\": \"disk1.img\", \"label\": \"daily\", \"md5\": \"868c4a485be864f509a834d2ceda4d5a\", \"os\": \"ubuntu\", \"pubname\": \"ubuntu-plucky-daily-ppc64el-server-20241122\", \"release\": \"plucky\", \"release_codename\": \"P", "source_content_id": "com.ubuntu.cloud:daily:download", "user_id": "c871debdeffd4cb8b69ce618fc4aa361", "version_name": "20241122", "name": "adt/ubuntu-plucky-ppc64el-server-20241129.img", "disk_format": "qcow2", "container_format": "bare", "visibility": "private", "size": 2717908992, "virtual_size": 21474836480, "status": "active", "checksum": "60910889151d80fa91781373f13ea8f3", "protected": false, "min_ram": 0, "min_disk": 20, "owner": "623df63b80274c21bc79a0c35e68d615", "os_hidden": false, "os_hash_algo": "sha512", "os_hash_value": "1edbba326782242ba8691f1f814946e3c028441fb2decb1a490a60bcf873482df806d9c79a8a6544404da2b8e9cdfde2e5fa797bf83c91edf2a11bd6d6c2843f", "id": "4310160b-3912-43a6-9b37-357145536086", "created_at": "2024-11-29T06:32:16Z", "updated_at": "2024-11-29T06:32:44Z", "locations": [{"url": "rbd://eea9d068-c18c-11ed-8dc0-013aacb71b80/glance/4310160b-3912-43a6-9b37-357145536086/snap", "metadata": {"store": "ceph"}}], "direct_url": "rbd://eea9d068-c18c-11ed-8dc0-013aacb71b80/glance/4310160b-3912-43a6-9b37-357145536086/snap", "tags": [], "self": "/v2/images/4310160b-3912-43a6-9b37-357145536086", "file": "/v2/images/4310160b-3912-43a6-9b37-357145536086/file", "schema": "/v2/schemas/image", "stores": "ceph"}
712s DEBUG (session:936) GET call to image for https://glance.ps6.canonical.com:9292/v2/images/4310160b-3912-43a6-9b37-357145536086 used request id req-28f9e5b7-775b-46a0-8303-e2bd573942db
712s DEBUG (session:517) REQ: curl -g -i -X GET https://nova.ps6.canonical.com:8774/v2.1/flavors/autopkgtest-ppc64el -H "Accept: application/json" -H "OpenStack-API-Version: compute 2.87" -H "User-Agent: python-novaclient" -H "X-Auth-Token: {SHA256}0769597da71b697ad99512361ba83dfd160ae3313ab3af85f3a85fe5165df333" -H "X-OpenStack-Nova-API-Version: 2.87"
712s DEBUG (connectionpool:429) https://nova.ps6.canonical.com:8774 "GET /v2.1/flavors/autopkgtest-ppc64el HTTP/1.1" 404 92
712s DEBUG (session:548) RESP: [404] Connection: Keep-Alive Content-Length: 92 Content-Type: application/json; charset=UTF-8 Date: Fri, 29 Nov 2024 21:25:04 GMT Keep-Alive: timeout=75, max=998 OpenStack-API-Version: compute 2.87 Server: Apache/2.4.52 (Ubuntu) Vary: OpenStack-API-Version,X-OpenStack-Nova-API-Version X-OpenStack-Nova-API-Version: 2.87 x-compute-request-id: req-2608d654-3f79-4d0d-ad15-824c2b9b6e92 x-openstack-request-id: req-2608d654-3f79-4d0d-ad15-824c2b9b6e92
712s DEBUG (session:580) RESP BODY: {"itemNotFound": {"code": 404, "message": "Flavor autopkgtest-ppc64el could not be found."}}
712s DEBUG (session:936) GET call to compute for https://nova.ps6.canonical.com:8774/v2.1/flavors/autopkgtest-ppc64el used request id req-2608d654-3f79-4d0d-ad15-824c2b9b6e92
712s DEBUG (session:517) REQ: curl -g -i -X GET https://nova.ps6.canonical.com:8774/v2.1/flavors?is_public=None -H "Accept: application/json" -H "OpenStack-API-Version: compute 2.87" -H "User-Agent: python-novaclient" -H "X-Auth-Token: {SHA256}0769597da71b697ad99512361ba83dfd160ae3313ab3af85f3a85fe5165df333" -H "X-OpenStack-Nova-API-Version: 2.87"
712s DEBUG (connectionpool:429) https://nova.ps6.canonical.com:8774 "GET /v2.1/flavors?is_public=None HTTP/1.1" 200 39839
712s DEBUG (session:548) RESP: [200] Connection: Keep-Alive Content-Length: 39839 Content-Type: application/json Date: Fri, 29 Nov 2024 21:25:04 GMT Keep-Alive: timeout=75, max=997 OpenStack-API-Version: compute 2.87 Server: Apache/2.4.52 (Ubuntu) Vary: OpenStack-API-Version,X-OpenStack-Nova-API-Version X-OpenStack-Nova-API-Version: 2.87 x-compute-request-id: req-096cc938-5562-4a20-bfe9-ceed971e2a36 x-openstack-request-id: req-096cc938-5562-4a20-bfe9-ceed971e2a36
712s DEBUG (session:580) RESP BODY: {"flavors": [{"id": "05338e57-e2ba-4813-9a8a-2f2af73f8ab2", "name": "builder-ppc64el-cpu2-ram4-disk100", "links": [{"rel": "self", "href": "https://nova.ps6.canonical.com:8774/v2.1/flavors/05338e57-e2ba-4813-9a8a-2f2af73f8ab2"}, {"rel": "bookmark", "href": "https://nova.ps6.canonical.com:8774/flavors/05338e57-e2ba-4813-9a8a-2f2af73f8ab2"}], "description": null}, {"id": "08090b4b-98a9-4c15-8ad4-cc6711700879", "name": "builder-ppc64el-cpu8-ram64-disk20", "links": [{"rel": "self", "href": "https://nova.ps6.canonical.com:8774/v2.1/flavors/08090b4b-98a9-4c15-8ad4-cc6711700879"}, {"rel": "bookmark", "href": "https://nova.ps6.canonical.com:8774/flavors/08090b4b-98a9-4c15-8ad4-cc6711700879"}], "description": null}, {"id": "0825b8b1-2b9c-42bf-b3e6-e827c22d8df5", "name": "builder-ppc64el-cpu8-ram4-disk100", "links": [{"rel": "self", "href": "https://nova.ps6.canonical.com:8774/v2.1/flavors/0825b8b1-2b9c-42bf-b3e6-e827c22d8df5"}, {"rel": "bookmark", "href": 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null}, {"id": "d0030e34-8145-4944-a92d-ba1e454c6126", "name": "builder-ppc64el-cpu64-ram256-disk50", "links": [{"rel": "self", "href": "https://nova.ps6.canonical.com:8774/v2.1/flavors/d0030e34-8145-4944-a92d-ba1e454c6126"}, {"rel": "bookmark", "href": "https://nova.ps6.canonical.com:8774/flavors/d0030e34-8145-4944-a92d-ba1e454c6126"}], "description": null}, {"id": "d24cccba-50db-4ebf-8e12-4f601202a489", "name": "builder-ppc64el-cpu2-ram4-disk20", "links": [{"rel": "self", "href": "https://nova.ps6.canonical.com:8774/v2.1/flavors/d24cccba-50db-4ebf-8e12-4f601202a489"}, {"rel": "bookmark", "href": "https://nova.ps6.canonical.com:8774/flavors/d24cccba-50db-4ebf-8e12-4f601202a489"}], "description": null}, {"id": "d3801d0d-ae1d-474a-be3f-c3b4e0d75ce6", "name": "builder-ppc64el-cpu4-ram32-disk50", "links": [{"rel": "self", "href": "https://nova.ps6.canonical.com:8774/v2.1/flavors/d3801d0d-ae1d-474a-be3f-c3b4e0d75ce6"}, {"rel": "bookmark", "href": "https://nova.ps6.canonical.com:8774/flavors/d3801d0d-ae1d-474a-be3f-c3b4e0d75ce6"}], "description": null}, {"id": "d4a9ba53-090a-4189-a822-48d3e2d80aa2", "name": "builder-ppc64el-cpu2-ram32-disk50", "links": [{"rel": "self", "href": "https://nova.ps6.canonical.com:8774/v2.1/flavors/d4a9ba53-090a-4189-a822-48d3e2d80aa2"}, {"rel": "bookmark", "href": "https://nova.ps6.canonical.com:8774/flavors/d4a9ba53-090a-4189-a822-48d3e2d80aa2"}], "description": null}, {"id": "d5142b95-4b59-484a-8d9d-e0519b9fdbba", "name": "builder-ppc64el-cpu4-ram32-disk100", "links": [{"rel": "self", "href": "https://nova.ps6.canonical.com:8774/v2.1/flavors/d5142b95-4b59-484a-8d9d-e0519b9fdbba"}, {"rel": "bookmark", "href": "https://nova.ps6.canonical.com:8774/flavors/d5142b95-4b59-484a-8d9d-e0519b9fdbba"}], "description": null}, {"id": "d67d41f2-0658-4e81-ac4f-abc5e19944a7", "name": "builder-ppc64el-cpu2-ram64-disk20", "links": [{"rel": "self", "href": "https://nova.ps6.canonical.com:8774/v2.1/flavors/d67d41f2-0658-4e81-ac4f-abc5e19944a7"}, {"rel": "bookmark", "href": "https://nova.ps6.canonical.com:8774/flavors/d67d41f2-0658-4e81-ac4f-abc5e19944a7"}], "description": null}, {"id": "d7441372-a91d-47c8-89a4-c08f59ece241", "name": "builder-ppc64el-cpu16-ram32-disk20", "links": [{"rel": "self", "href": "https://nova.ps6.canonical.com:8774/v2.1/flavors/d7441372-a91d-47c8-89a4-c08f59ece241"}, {"rel": "bookmark", "href": "https://nova.ps6.canonical.com:8774/flavors/d7441372-a91d-47c8-89a4-c08f59ece241"}], "description": null}, {"id": "da39261b-e816-43f1-a7bb-f5e784e73fbb", "name": "builder-ppc64el-cpu16-ram16-disk100", "links": [{"rel": "self", "href": "https://nova.ps6.canonical.com:8774/v2.1/flavors/da39261b-e816-43f1-a7bb-f5e784e73fbb"}, {"rel": "bookmark", "href": "https://nova.ps6.canonical.com:8774/flavors/da39261b-e816-43f1-a7bb-f5e784e73fbb"}], "description": null}, {"id": "dcc8e80f-6e4d-4f7d-a68f-298ebcb4376d", "name": "builder-ppc64el-cpu32-ram256-disk100", "links": [{"rel": "self", "href": "https://nova.ps6.canonical.com:8774/v2.1/flavors/dcc8e80f-6e4d-4f7d-a68f-298ebcb4376d"}, {"rel": "bookmark", "href": "https://nova.ps6.canonical.com:8774/flavors/dcc8e80f-6e4d-4f7d-a68f-298ebcb4376d"}], "description": null}, {"id": "dd1211e5-4133-400a-9dc9-71fa83fd4d97", "name": "builder-ppc64el-cpu2-ram55-disk28", "links": [{"rel": "self", "href": "https://nova.ps6.canonical.com:8774/v2.1/flavors/dd1211e5-4133-400a-9dc9-71fa83fd4d97"}, {"rel": "bookmark", "href": "https://nova.ps6.canonical.com:8774/flavors/dd1211e5-4133-400a-9dc9-71fa83fd4d97"}], "description": null}, {"id": "dfa7dc00-528e-45c5-b267-3d798e73e8da", "name": "builder-ppc64el-cpu8-ram4-disk20", "links": [{"rel": "self", "href": "https://nova.ps6.canonical.com:8774/v2.1/flavors/dfa7dc00-528e-45c5-b267-3d798e73e8da"}, {"rel": "bookmark", "href": "https://nova.ps6.canonical.com:8774/flavors/dfa7dc00-528e-45c5-b267-3d798e73e8da"}], "description": null}, {"id": "e2116c8a-a35a-432f-8bf7-06bef30c10ae", "name": "builder-ppc64el-cpu8-ram12-disk20", "links": [{"rel": "self", "href": "https://nova.ps6.canonical.com:8774/v2.1/flavors/e2116c8a-a35a-432f-8bf7-06bef30c10ae"}, {"rel": "bookmark", "href": "https://nova.ps6.canonical.com:8774/flavors/e2116c8a-a35a-432f-8bf7-06bef30c10ae"}], "description": null}, {"id": "e2818c96-49bf-4337-a614-ae546d7d7302", "name": "builder-ppc64el-cpu4-ram32-disk20", "links": [{"rel": "self", "href": "https://nova.ps6.canonical.com:8774/v2.1/flavors/e2818c96-49bf-4337-a614-ae546d7d7302"}, {"rel": "bookmark", "href": "https://nova.ps6.canonical.com:8774/flavors/e2818c96-49bf-4337-a614-ae546d7d7302"}], "description": null}, {"id": "e628d527-f077-426d-9380-5eea778aabc2", "name": "builder-ppc64el-cpu8-ram16-disk20", "links": [{"rel": "self", "href": "https://nova.ps6.canonical.com:8774/v2.1/flavors/e628d527-f077-426d-9380-5eea778aabc2"}, {"rel": "bookmark", "href": "https://nova.ps6.canonical.com:8774/flavors/e628d527-f077-426d-9380-5eea778aabc2"}], "description": null}, {"id": "e752e039-cbe4-4a16-8197-de87ba42b83e", "name": "builder-ppc64el-cpu64-ram256-disk100", "links": [{"rel": "self", "href": "https://nova.ps6.canonical.com:8774/v2.1/flavors/e752e039-cbe4-4a16-8197-de87ba42b83e"}, {"rel": "bookmark", "href": "https://nova.ps6.canonical.com:8774/flavors/e752e039-cbe4-4a16-8197-de87ba42b83e"}], "description": null}, {"id": "e7f811c8-a60c-45c6-86c8-8e4b025751df", "name": "builder-ppc64el-cpu4-ram16-disk40", "links": [{"rel": "self", "href": "https://nova.ps6.canonical.com:8774/v2.1/flavors/e7f811c8-a60c-45c6-86c8-8e4b025751df"}, {"rel": "bookmark", "href": "https://nova.ps6.canonical.com:8774/flavors/e7f811c8-a60c-45c6-86c8-8e4b025751df"}], "description": null}, {"id": "eb80d7e2-b6e1-42a5-b80d-3dad861f6989", "name": "builder-ppc64el-cpu16-ram4-disk20", "links": [{"rel": "self", "href": "https://nova.ps6.canonical.com:8774/v2.1/flavors/eb80d7e2-b6e1-42a5-b80d-3dad861f6989"}, {"rel": "bookmark", "href": "https://nova.ps6.canonical.com:8774/flavors/eb80d7e2-b6e1-42a5-b80d-3dad861f6989"}], "description": null}, {"id": "ed127e2b-02b8-4e61-bf10-0c89b90928e6", "name": "builder-ppc64el-cpu64-ram128-disk50", "links": [{"rel": "self", "href": "https://nova.ps6.canonical.com:8774/v2.1/flavors/ed127e2b-02b8-4e61-bf10-0c89b90928e6"}, {"rel": "bookmark", "href": "https://nova.ps6.canonical.com:8774/flavors/ed127e2b-02b8-4e61-bf10-0c89b90928e6"}], "description": null}, {"id": "ef7301a7-71f4-48ac-b387-23251f4060e1", "name": "builder-ppc64el-cpu16-ram8-disk100", "links": [{"rel": "self", "href": "https://nova.ps6.canonical.com:8774/v2.1/flavors/ef7301a7-71f4-48ac-b387-23251f4060e1"}, {"rel": "bookmark", "href": "https://nova.ps6.canonical.com:8774/flavors/ef7301a7-71f4-48ac-b387-23251f4060e1"}], "description": null}, {"id": "f0f1af4d-f230-40c1-b789-c94e02a68daa", "name": "builder-ppc64el-cpu16-ram8-disk20", "links": [{"rel": "self", "href": "https://nova.ps6.canonical.com:8774/v2.1/flavors/f0f1af4d-f230-40c1-b789-c94e02a68daa"}, {"rel": "bookmark", "href": "https://nova.ps6.canonical.com:8774/flavors/f0f1af4d-f230-40c1-b789-c94e02a68daa"}], "description": null}, {"id": "f40b2dbc-5d69-40b0-a9fc-71c32de93ca3", "name": "autopkgtest-big-ppc64el", "links": [{"rel": "self", "href": "https://nova.ps6.canonical.com:8774/v2.1/flavors/f40b2dbc-5d69-40b0-a9fc-71c32de93ca3"}, {"rel": "bookmark", "href": "https://nova.ps6.canonical.com:8774/flavors/f40b2dbc-5d69-40b0-a9fc-71c32de93ca3"}], "description": null}, {"id": "f6aae414-e26b-4692-95d4-d851b6993c2a", "name": "builder-ppc64el-cpu2-ram8-disk50", "links": [{"rel": "self", "href": "https://nova.ps6.canonical.com:8774/v2.1/flavors/f6aae414-e26b-4692-95d4-d851b6993c2a"}, {"rel": "bookmark", "href": "https://nova.ps6.canonical.com:8774/flavors/f6aae414-e26b-4692-95d4-d851b6993c2a"}], "description": null}, {"id": "f91b245b-ad92-47f6-8861-d1e070fcc19c", "name": "builder-ppc64el-cpu2-ram64-disk100", "links": [{"rel": "self", "href": "https://nova.ps6.canonical.com:8774/v2.1/flavors/f91b245b-ad92-47f6-8861-d1e070fcc19c"}, {"rel": "bookmark", "href": "https://nova.ps6.canonical.com:8774/flavors/f91b245b-ad92-47f6-8861-d1e070fcc19c"}], "description": null}, {"id": "fa3bbba4-5e72-4ca3-9661-ccf45947bbf5", "name": "builder-ppc64el-cpu16-ram4-disk100", "links": [{"rel": "self", "href": "https://nova.ps6.canonical.com:8774/v2.1/flavors/fa3bbba4-5e72-4ca3-9661-ccf45947bbf5"}, {"rel": "bookmark", "href": "https://nova.ps6.canonical.com:8774/flavors/fa3bbba4-5e72-4ca3-9661-ccf45947bbf5"}], "description": null}, {"id": "ff4cf1ee-6e00-49b7-9d11-fafa69b910df", "name": "builder-ppc64el-cpu8-ram32-disk40", "links": [{"rel": "self", "href": "https://nova.ps6.canonical.com:8774/v2.1/flavors/ff4cf1ee-6e00-49b7-9d11-fafa69b910df"}, {"rel": "bookmark", "href": "https://nova.ps6.canonical.com:8774/flavors/ff4cf1ee-6e00-49b7-9d11-fafa69b910df"}], "description": null}]}
712s DEBUG (session:936) GET call to compute for https://nova.ps6.canonical.com:8774/v2.1/flavors?is_public=None used request id req-096cc938-5562-4a20-bfe9-ceed971e2a36
712s DEBUG (session:517) REQ: curl -g -i -X GET https://nova.ps6.canonical.com:8774/v2.1/flavors/102d0b57-e8d2-46c6-9be4-f452119a0280 -H "Accept: application/json" -H "OpenStack-API-Version: compute 2.87" -H "User-Agent: python-novaclient" -H "X-Auth-Token: {SHA256}0769597da71b697ad99512361ba83dfd160ae3313ab3af85f3a85fe5165df333" -H "X-OpenStack-Nova-API-Version: 2.87"
712s DEBUG (connectionpool:429) https://nova.ps6.canonical.com:8774 "GET /v2.1/flavors/102d0b57-e8d2-46c6-9be4-f452119a0280 HTTP/1.1" 200 623
712s DEBUG (session:548) RESP: [200] Connection: Keep-Alive Content-Length: 623 Content-Type: application/json Date: Fri, 29 Nov 2024 21:25:04 GMT Keep-Alive: timeout=75, max=996 OpenStack-API-Version: compute 2.87 Server: Apache/2.4.52 (Ubuntu) Vary: OpenStack-API-Version,X-OpenStack-Nova-API-Version X-OpenStack-Nova-API-Version: 2.87 x-compute-request-id: req-78cf2930-484a-4f3e-999d-80438696cb26 x-openstack-request-id: req-78cf2930-484a-4f3e-999d-80438696cb26
712s DEBUG (session:580) RESP BODY: {"flavor": {"id": "102d0b57-e8d2-46c6-9be4-f452119a0280", "name": "autopkgtest-ppc64el", "ram": 4096, "disk": 20, "swap": 0, "OS-FLV-EXT-DATA:ephemeral": 0, "OS-FLV-DISABLED:disabled": false, "vcpus": 2, "os-flavor-access:is_public": false, "rxtx_factor": 1.0, "links": [{"rel": "self", "href": "https://nova.ps6.canonical.com:8774/v2.1/flavors/102d0b57-e8d2-46c6-9be4-f452119a0280"}, {"rel": "bookmark", "href": "https://nova.ps6.canonical.com:8774/flavors/102d0b57-e8d2-46c6-9be4-f452119a0280"}], "description": null, "extra_specs": {"aggregate_instance_extra_specs:commit": "builder-ppc64el", "hw_rng:allowed": "True"}}}
712s DEBUG (session:936) GET call to compute for https://nova.ps6.canonical.com:8774/v2.1/flavors/102d0b57-e8d2-46c6-9be4-f452119a0280 used request id req-78cf2930-484a-4f3e-999d-80438696cb26
712s DEBUG (session:517) REQ: curl -g -i -X POST https://nova.ps6.canonical.com:8774/v2.1/servers -H "Accept: application/json" -H "Content-Type: application/json" -H "OpenStack-API-Version: compute 2.87" -H "User-Agent: python-novaclient" -H "X-Auth-Token: {SHA256}0769597da71b697ad99512361ba83dfd160ae3313ab3af85f3a85fe5165df333" -H "X-OpenStack-Nova-API-Version: 2.87" -d '{"server": {"name": "adt-plucky-ppc64el-htslib-20241129-211904-juju-7f2275-prod-proposed-migration-environment-20-0ca74b99-ef6e-43d6-9706-6668d4f93da1", "imageRef": "4310160b-3912-43a6-9b37-357145536086", "flavorRef": "102d0b57-e8d2-46c6-9be4-f452119a0280", "user_data": "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", "key_name": "testbed-juju-7f2275-prod-proposed-migration-environment-20", "min_count": 1, "max_count": 1, "security_groups": [{"name": "autopkgtest-juju-7f2275-prod-proposed-migration-environment-20@bos03-ppc64el-8.secgroup"}], "networks": [{"uuid": "3083d638-5564-4f5c-97ef-09f045123d20"}]}}'
712s DEBUG (connectionpool:429) https://nova.ps6.canonical.com:8774 "POST /v2.1/servers HTTP/1.1" 202 478
712s DEBUG (session:548) RESP: [202] Connection: Keep-Alive Content-Length: 478 Content-Type: application/json Date: Fri, 29 Nov 2024 21:25:04 GMT Keep-Alive: timeout=75, max=995 OpenStack-API-Version: compute 2.87 Server: Apache/2.4.52 (Ubuntu) Vary: OpenStack-API-Version,X-OpenStack-Nova-API-Version X-OpenStack-Nova-API-Version: 2.87 location: https://nova.ps6.canonical.com:8774/v2.1/servers/d4cd6195-aeea-4d38-b890-e0fcc5c7d68c x-compute-request-id: req-f5590393-37b0-42fb-a96d-1cd93ae93e25 x-openstack-request-id: req-f5590393-37b0-42fb-a96d-1cd93ae93e25
712s DEBUG (session:580) RESP BODY: {"server": {"id": "d4cd6195-aeea-4d38-b890-e0fcc5c7d68c", "links": [{"rel": "self", "href": "https://nova.ps6.canonical.com:8774/v2.1/servers/d4cd6195-aeea-4d38-b890-e0fcc5c7d68c"}, {"rel": "bookmark", "href": "https://nova.ps6.canonical.com:8774/servers/d4cd6195-aeea-4d38-b890-e0fcc5c7d68c"}], "OS-DCF:diskConfig": "MANUAL", "security_groups": [{"name": "autopkgtest-juju-7f2275-prod-proposed-migration-environment-20@bos03-ppc64el-8.secgroup"}], "adminPass": "AFpKm84o43fU"}}
712s DEBUG (session:936) POST call to compute for https://nova.ps6.canonical.com:8774/v2.1/servers used request id req-f5590393-37b0-42fb-a96d-1cd93ae93e25
712s DEBUG (session:517) REQ: curl -g -i -X GET https://nova.ps6.canonical.com:8774/v2.1/servers/d4cd6195-aeea-4d38-b890-e0fcc5c7d68c -H "Accept: application/json" -H "OpenStack-API-Version: compute 2.87" -H "User-Agent: python-novaclient" -H "X-Auth-Token: {SHA256}0769597da71b697ad99512361ba83dfd160ae3313ab3af85f3a85fe5165df333" -H "X-OpenStack-Nova-API-Version: 2.87"
712s DEBUG (connectionpool:429) https://nova.ps6.canonical.com:8774 "GET /v2.1/servers/d4cd6195-aeea-4d38-b890-e0fcc5c7d68c HTTP/1.1" 200 3198
712s DEBUG (session:548) RESP: [200] Connection: Keep-Alive Content-Length: 3198 Content-Type: application/json Date: Fri, 29 Nov 2024 21:25:05 GMT Keep-Alive: timeout=75, max=994 OpenStack-API-Version: compute 2.87 Server: Apache/2.4.52 (Ubuntu) Vary: OpenStack-API-Version,X-OpenStack-Nova-API-Version X-OpenStack-Nova-API-Version: 2.87 x-compute-request-id: req-4407414e-4719-4ab9-8ea0-db20a2d112f0 x-openstack-request-id: req-4407414e-4719-4ab9-8ea0-db20a2d112f0
712s DEBUG (session:580) RESP BODY: {"server": {"id": "d4cd6195-aeea-4d38-b890-e0fcc5c7d68c", "name": "adt-plucky-ppc64el-htslib-20241129-211904-juju-7f2275-prod-proposed-migration-environment-20-0ca74b99-ef6e-43d6-9706-6668d4f93da1", "status": "BUILD", "tenant_id": "623df63b80274c21bc79a0c35e68d615", "user_id": "c871debdeffd4cb8b69ce618fc4aa361", "metadata": {}, "hostId": "", "image": {"id": "4310160b-3912-43a6-9b37-357145536086", "links": [{"rel": "bookmark", "href": "https://nova.ps6.canonical.com:8774/images/4310160b-3912-43a6-9b37-357145536086"}]}, "flavor": {"vcpus": 2, "ram": 4096, "disk": 20, "ephemeral": 0, "swap": 0, "original_name": "autopkgtest-ppc64el", "extra_specs": {"aggregate_instance_extra_specs:commit": "builder-ppc64el", "hw_rng:allowed": "True"}}, "created": "2024-11-29T21:25:05Z", "updated": "2024-11-29T21:25:05Z", "addresses": {}, "accessIPv4": "", "accessIPv6": "", "links": [{"rel": "self", "href": "https://nova.ps6.canonical.com:8774/v2.1/servers/d4cd6195-aeea-4d38-b890-e0fcc5c7d68c"}, {"rel": "bookmark", "href": "https://nova.ps6.canonical.com:8774/servers/d4cd6195-aeea-4d38-b890-e0fcc5c7d68c"}], "OS-DCF:diskConfig": "MANUAL", "progress": 0, "OS-EXT-AZ:availability_zone": "", "config_drive": "", "key_name": "testbed-juju-7f2275-prod-proposed-migration-environment-20", "OS-SRV-USG:launched_at": null, "OS-SRV-USG:terminated_at": null, "OS-EXT-SRV-ATTR:host": null, "OS-EXT-SRV-ATTR:instance_name": "", "OS-EXT-SRV-ATTR:hypervisor_hostname": null, "OS-EXT-SRV-ATTR:reservation_id": "r-b236tf82", "OS-EXT-SRV-ATTR:launch_index": 0, "OS-EXT-SRV-ATTR:hostname": "adt-plucky-ppc64el-htslib-20241129-211904-juju-7f2275-prod-prop", "OS-EXT-SRV-ATTR:kernel_id": "", "OS-EXT-SRV-ATTR:ramdisk_id": "", "OS-EXT-SRV-ATTR:root_device_name": null, "OS-EXT-SRV-ATTR:user_data": "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", "OS-EXT-STS:task_state": "scheduling", "OS-EXT-STS:vm_state": "building", "OS-EXT-STS:power_state": 0, "os-extended-volumes:volumes_attached": [], "locked": false, "locked_reason": null, "description": null, "tags": [], "trusted_image_certificates": null, "server_groups": []}}
712s DEBUG (session:936) GET call to compute for https://nova.ps6.canonical.com:8774/v2.1/servers/d4cd6195-aeea-4d38-b890-e0fcc5c7d68c used request id req-4407414e-4719-4ab9-8ea0-db20a2d112f0
712s DEBUG (session:517) REQ: curl -g -i -X GET https://glance.ps6.canonical.com:9292/v2/images/4310160b-3912-43a6-9b37-357145536086 -H "Accept: application/json" -H "OpenStack-API-Version: compute 2.87" -H "User-Agent: python-novaclient" -H "X-Auth-Token: {SHA256}0769597da71b697ad99512361ba83dfd160ae3313ab3af85f3a85fe5165df333" -H "X-OpenStack-Nova-API-Version: 2.87"
712s DEBUG (connectionpool:429) https://glance.ps6.canonical.com:9292 "GET /v2/images/4310160b-3912-43a6-9b37-357145536086 HTTP/1.1" 200 2294
712s DEBUG (session:548) RESP: [200] Connection: Keep-Alive Content-Length: 2294 Content-Type: application/json Date: Fri, 29 Nov 2024 21:25:05 GMT Keep-Alive: timeout=75, max=999 Server: Apache/2.4.52 (Ubuntu) X-Openstack-Request-Id: req-05888a10-043d-4d92-8a70-f9ca670b5478
712s DEBUG (session:580) RESP BODY: {"architecture": "ppc64le", "base_image_ref": "fe0db2b7-58a0-4fc8-80f2-2de75285f410", "boot_roles": "reader,load-balancer_member,member", "content_id": "auto.sync", "hw_cdrom_bus": "scsi", "hw_disk_bus": "virtio", "hw_machine_type": "pseries", "hw_video_model": "vga", "hw_vif_model": "virtio", "image_location": "snapshot", "image_state": "available", "image_type": "snapshot", "instance_uuid": "98175da7-553d-407a-9745-ad804d5e62cd", "item_name": "disk1.img", "os_distro": "ubuntu", "os_version": "25.04", "owner_id": "623df63b80274c21bc79a0c35e68d615", "owner_project_name": "prod-proposed-migration-ppc64el_project", "owner_user_name": "prod-proposed-migration-ppc64el", "product_name": "com.ubuntu.cloud.daily:server:25.04:ppc64el", "simplestreams_metadata": "{\"aliases\": \"25.04,p,plucky,devel\", \"arch\": \"ppc64el\", \"ftype\": \"disk1.img\", \"label\": \"daily\", \"md5\": \"868c4a485be864f509a834d2ceda4d5a\", \"os\": \"ubuntu\", \"pubname\": \"ubuntu-plucky-daily-ppc64el-server-20241122\", \"release\": \"plucky\", \"release_codename\": \"P", "source_content_id": "com.ubuntu.cloud:daily:download", "user_id": "c871debdeffd4cb8b69ce618fc4aa361", "version_name": "20241122", "name": "adt/ubuntu-plucky-ppc64el-server-20241129.img", "disk_format": "qcow2", "container_format": "bare", "visibility": "private", "size": 2717908992, "virtual_size": 21474836480, "status": "active", "checksum": "60910889151d80fa91781373f13ea8f3", "protected": false, "min_ram": 0, "min_disk": 20, "owner": "623df63b80274c21bc79a0c35e68d615", "os_hidden": false, "os_hash_algo": "sha512", "os_hash_value": "1edbba326782242ba8691f1f814946e3c028441fb2decb1a490a60bcf873482df806d9c79a8a6544404da2b8e9cdfde2e5fa797bf83c91edf2a11bd6d6c2843f", "id": "4310160b-3912-43a6-9b37-357145536086", "created_at": "2024-11-29T06:32:16Z", "updated_at": "2024-11-29T06:32:44Z", "locations": [{"url": "rbd://eea9d068-c18c-11ed-8dc0-013aacb71b80/glance/4310160b-3912-43a6-9b37-357145536086/snap", "metadata": {"store": "ceph"}}], "direct_url": "rbd://eea9d068-c18c-11ed-8dc0-013aacb71b80/glance/4310160b-3912-43a6-9b37-357145536086/snap", "tags": [], "self": "/v2/images/4310160b-3912-43a6-9b37-357145536086", "file": "/v2/images/4310160b-3912-43a6-9b37-357145536086/file", "schema": "/v2/schemas/image", "stores": "ceph"}
712s DEBUG (session:936) GET call to image for https://glance.ps6.canonical.com:9292/v2/images/4310160b-3912-43a6-9b37-357145536086 used request id req-05888a10-043d-4d92-8a70-f9ca670b5478
712s +--------------------------------------+-----------------------------------------------------------------------------------------------------------------------------------+
712s | Property                             | Value                                                                                                                             |
712s +--------------------------------------+-----------------------------------------------------------------------------------------------------------------------------------+
712s | OS-DCF:diskConfig                    | MANUAL                                                                                                                            |
712s | OS-EXT-AZ:availability_zone          |                                                                                                                                   |
712s | OS-EXT-SRV-ATTR:host                 | -                                                                                                                                 |
712s | OS-EXT-SRV-ATTR:hostname             | adt-plucky-ppc64el-htslib-20241129-211904-juju-7f2275-prod-prop                                                                   |
712s | OS-EXT-SRV-ATTR:hypervisor_hostname  | -                                                                                                                                 |
712s | OS-EXT-SRV-ATTR:instance_name        |                                                                                                                                   |
712s | OS-EXT-SRV-ATTR:kernel_id            |                                                                                                                                   |
712s | OS-EXT-SRV-ATTR:launch_index         | 0                                                                                                                                 |
712s | OS-EXT-SRV-ATTR:ramdisk_id           |                                                                                                                                   |
712s | OS-EXT-SRV-ATTR:reservation_id       | r-b236tf82                                                                                                                        |
712s | OS-EXT-SRV-ATTR:root_device_name     | -                                                                                                                                 |
712s | OS-EXT-STS:power_state               | 0                                                                                                                                 |
712s | OS-EXT-STS:task_state                | scheduling                                                                                                                        |
712s | OS-EXT-STS:vm_state                  | building                                                                                                                          |
712s | OS-SRV-USG:launched_at               | -                                                                                                                                 |
712s | OS-SRV-USG:terminated_at             | -                                                                                                                                 |
712s | accessIPv4                           |                                                                                                                                   |
712s | accessIPv6                           |                                                                                                                                   |
712s | adminPass                            | AFpKm84o43fU                                                                                                                      |
712s | config_drive                         |                                                                                                                                   |
712s | created                              | 2024-11-29T21:25:05Z                                                                                                              |
712s | description                          | -                                                                                                                                 |
712s | flavor:disk                          | 20                                                                                                                                |
712s | flavor:ephemeral                     | 0                                                                                                                                 |
712s | flavor:extra_specs                   | {"aggregate_instance_extra_specs:commit": "builder-ppc64el", "hw_rng:allowed": "True"}                                            |
712s | flavor:original_name                 | autopkgtest-ppc64el                                                                                                               |
712s | flavor:ram                           | 4096                                                                                                                              |
712s | flavor:swap                          | 0                                                                                                                                 |
712s | flavor:vcpus                         | 2                                                                                                                                 |
712s | hostId                               |                                                                                                                                   |
712s | id                                   | d4cd6195-aeea-4d38-b890-e0fcc5c7d68c                                                                                              |
712s | image                                | adt/ubuntu-plucky-ppc64el-server-20241129.img (4310160b-3912-43a6-9b37-357145536086)                                              |
712s | key_name                             | testbed-juju-7f2275-prod-proposed-migration-environment-20                                                                        |
712s | locked                               | False                                                                                                                             |
712s | locked_reason                        | -                                                                                                                                 |
712s | metadata                             | {}                                                                                                                                |
712s | name                                 | adt-plucky-ppc64el-htslib-20241129-211904-juju-7f2275-prod-proposed-migration-environment-20-0ca74b99-ef6e-43d6-9706-6668d4f93da1 |
712s | os-extended-volumes:volumes_attached | []                                                                                                                                |
712s | progress                             | 0                                                                                                                                 |
712s | security_groups                      | autopkgtest-juju-7f2275-prod-proposed-migration-environment-20@bos03-ppc64el-8.secgroup                                           |
712s | server_groups                        | []                                                                                                                                |
712s | status                               | BUILD                                                                                                                             |
712s | tags                                 | []                                                                                                                                |
712s | tenant_id                            | 623df63b80274c21bc79a0c35e68d615                                                                                                  |
712s | trusted_image_certificates           | -                                                                                                                                 |
712s | updated                              | 2024-11-29T21:25:05Z                                                                                                              |
712s | user_id                              | c871debdeffd4cb8b69ce618fc4aa361                                                                                                  |
712s +--------------------------------------+-----------------------------------------------------------------------------------------------------------------------------------+DEBUG (session:517) REQ: curl -g -i -X GET https://nova.ps6.canonical.com:8774/v2.1/servers/d4cd6195-aeea-4d38-b890-e0fcc5c7d68c -H "Accept: application/json" -H "OpenStack-API-Version: compute 2.87" -H "User-Agent: python-novaclient" -H "X-Auth-Token: {SHA256}0769597da71b697ad99512361ba83dfd160ae3313ab3af85f3a85fe5165df333" -H "X-OpenStack-Nova-API-Version: 2.87"
712s DEBUG (connectionpool:429) https://nova.ps6.canonical.com:8774 "GET /v2.1/servers/d4cd6195-aeea-4d38-b890-e0fcc5c7d68c HTTP/1.1" 200 3198
712s DEBUG (session:548) RESP: [200] Connection: Keep-Alive Content-Length: 3198 Content-Type: application/json Date: Fri, 29 Nov 2024 21:25:05 GMT Keep-Alive: timeout=75, max=993 OpenStack-API-Version: compute 2.87 Server: Apache/2.4.52 (Ubuntu) Vary: OpenStack-API-Version,X-OpenStack-Nova-API-Version X-OpenStack-Nova-API-Version: 2.87 x-compute-request-id: req-f558ee7a-4f97-4d89-bb3f-25603ccf9f1b x-openstack-request-id: req-f558ee7a-4f97-4d89-bb3f-25603ccf9f1b
712s DEBUG (session:580) RESP BODY: {"server": {"id": "d4cd6195-aeea-4d38-b890-e0fcc5c7d68c", "name": "adt-plucky-ppc64el-htslib-20241129-211904-juju-7f2275-prod-proposed-migration-environment-20-0ca74b99-ef6e-43d6-9706-6668d4f93da1", "status": "BUILD", "tenant_id": "623df63b80274c21bc79a0c35e68d615", "user_id": "c871debdeffd4cb8b69ce618fc4aa361", "metadata": {}, "hostId": "", "image": {"id": "4310160b-3912-43a6-9b37-357145536086", "links": [{"rel": "bookmark", "href": "https://nova.ps6.canonical.com:8774/images/4310160b-3912-43a6-9b37-357145536086"}]}, "flavor": {"vcpus": 2, "ram": 4096, "disk": 20, "ephemeral": 0, "swap": 0, "original_name": "autopkgtest-ppc64el", "extra_specs": {"aggregate_instance_extra_specs:commit": "builder-ppc64el", "hw_rng:allowed": "True"}}, "created": "2024-11-29T21:25:05Z", "updated": "2024-11-29T21:25:05Z", "addresses": {}, "accessIPv4": "", "accessIPv6": "", "links": [{"rel": "self", "href": "https://nova.ps6.canonical.com:8774/v2.1/servers/d4cd6195-aeea-4d38-b890-e0fcc5c7d68c"}, {"rel": "bookmark", "href": "https://nova.ps6.canonical.com:8774/servers/d4cd6195-aeea-4d38-b890-e0fcc5c7d68c"}], "OS-DCF:diskConfig": "MANUAL", "progress": 0, "OS-EXT-AZ:availability_zone": "", "config_drive": "", "key_name": "testbed-juju-7f2275-prod-proposed-migration-environment-20", "OS-SRV-USG:launched_at": null, "OS-SRV-USG:terminated_at": null, "OS-EXT-SRV-ATTR:host": null, "OS-EXT-SRV-ATTR:instance_name": "", "OS-EXT-SRV-ATTR:hypervisor_hostname": null, "OS-EXT-SRV-ATTR:reservation_id": "r-b236tf82", "OS-EXT-SRV-ATTR:launch_index": 0, "OS-EXT-SRV-ATTR:hostname": "adt-plucky-ppc64el-htslib-20241129-211904-juju-7f2275-prod-prop", "OS-EXT-SRV-ATTR:kernel_id": "", "OS-EXT-SRV-ATTR:ramdisk_id": "", "OS-EXT-SRV-ATTR:root_device_name": null, "OS-EXT-SRV-ATTR:user_data": "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", "OS-EXT-STS:task_state": "scheduling", "OS-EXT-STS:vm_state": "building", "OS-EXT-STS:power_state": 0, "os-extended-volumes:volumes_attached": [], "locked": false, "locked_reason": null, "description": null, "tags": [], "trusted_image_certificates": null, "server_groups": []}}
712s DEBUG (session:936) GET call to compute for https://nova.ps6.canonical.com:8774/v2.1/servers/d4cd6195-aeea-4d38-b890-e0fcc5c7d68c used request id req-f558ee7a-4f97-4d89-bb3f-25603ccf9f1b
712s 
712s 
712s 
Server building... 0% completeDEBUG (session:517) REQ: curl -g -i -X GET https://nova.ps6.canonical.com:8774/v2.1/servers/d4cd6195-aeea-4d38-b890-e0fcc5c7d68c -H "Accept: application/json" -H "OpenStack-API-Version: compute 2.87" -H "User-Agent: python-novaclient" -H "X-Auth-Token: {SHA256}0769597da71b697ad99512361ba83dfd160ae3313ab3af85f3a85fe5165df333" -H "X-OpenStack-Nova-API-Version: 2.87"
712s DEBUG (connectionpool:429) https://nova.ps6.canonical.com:8774 "GET /v2.1/servers/d4cd6195-aeea-4d38-b890-e0fcc5c7d68c HTTP/1.1" 200 3325
712s DEBUG (session:548) RESP: [200] Connection: Keep-Alive Content-Length: 3325 Content-Type: application/json Date: Fri, 29 Nov 2024 21:25:10 GMT Keep-Alive: timeout=75, max=992 OpenStack-API-Version: compute 2.87 Server: Apache/2.4.52 (Ubuntu) Vary: OpenStack-API-Version,X-OpenStack-Nova-API-Version X-OpenStack-Nova-API-Version: 2.87 x-compute-request-id: req-9a4ea222-cfbb-4973-8748-c980d29ac2f5 x-openstack-request-id: req-9a4ea222-cfbb-4973-8748-c980d29ac2f5
712s DEBUG (session:580) RESP BODY: {"server": {"id": "d4cd6195-aeea-4d38-b890-e0fcc5c7d68c", "name": "adt-plucky-ppc64el-htslib-20241129-211904-juju-7f2275-prod-proposed-migration-environment-20-0ca74b99-ef6e-43d6-9706-6668d4f93da1", "status": "ERROR", "tenant_id": "623df63b80274c21bc79a0c35e68d615", "user_id": "c871debdeffd4cb8b69ce618fc4aa361", "metadata": {}, "hostId": "", "image": {"id": "4310160b-3912-43a6-9b37-357145536086", "links": [{"rel": "bookmark", "href": "https://nova.ps6.canonical.com:8774/images/4310160b-3912-43a6-9b37-357145536086"}]}, "flavor": {"vcpus": 2, "ram": 4096, "disk": 20, "ephemeral": 0, "swap": 0, "original_name": "autopkgtest-ppc64el", "extra_specs": {"aggregate_instance_extra_specs:commit": "builder-ppc64el", "hw_rng:allowed": "True"}}, "created": "2024-11-29T21:25:05Z", "updated": "2024-11-29T21:25:06Z", "addresses": {}, "accessIPv4": "", "accessIPv6": "", "links": [{"rel": "self", "href": "https://nova.ps6.canonical.com:8774/v2.1/servers/d4cd6195-aeea-4d38-b890-e0fcc5c7d68c"}, {"rel": "bookmark", "href": "https://nova.ps6.canonical.com:8774/servers/d4cd6195-aeea-4d38-b890-e0fcc5c7d68c"}], "OS-DCF:diskConfig": "MANUAL", "fault": {"code": 500, "created": "2024-11-29T21:25:06Z", "message": "No valid host was found. There are not enough hosts available."}, "OS-EXT-AZ:availability_zone": "", "config_drive": "", "key_name": "testbed-juju-7f2275-prod-proposed-migration-environment-20", "OS-SRV-USG:launched_at": null, "OS-SRV-USG:terminated_at": null, "OS-EXT-SRV-ATTR:host": null, "OS-EXT-SRV-ATTR:instance_name": "instance-0006e0e3", "OS-EXT-SRV-ATTR:hypervisor_hostname": null, "OS-EXT-SRV-ATTR:reservation_id": "r-b236tf82", "OS-EXT-SRV-ATTR:launch_index": 0, "OS-EXT-SRV-ATTR:hostname": "adt-plucky-ppc64el-htslib-20241129-211904-juju-7f2275-prod-prop", "OS-EXT-SRV-ATTR:kernel_id": "", "OS-EXT-SRV-ATTR:ramdisk_id": "", "OS-EXT-SRV-ATTR:root_device_name": null, "OS-EXT-SRV-ATTR:user_data": "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", "OS-EXT-STS:task_state": null, "OS-EXT-STS:vm_state": "error", "OS-EXT-STS:power_state": 0, "os-extended-volumes:volumes_attached": [], "locked": false, "locked_reason": null, "description": null, "tags": [], "trusted_image_certificates": null, "server_groups": []}}
712s DEBUG (session:936) GET call to compute for https://nova.ps6.canonical.com:8774/v2.1/servers/d4cd6195-aeea-4d38-b890-e0fcc5c7d68c used request id req-9a4ea222-cfbb-4973-8748-c980d29ac2f5
712s DEBUG (shell:822) <Server: adt-plucky-ppc64el-htslib-20241129-211904-juju-7f2275-prod-proposed-migration-environment-20-0ca74b99-ef6e-43d6-9706-6668d4f93da1>
712s Traceback (most recent call last):
712s   File "/usr/lib/python3/dist-packages/novaclient/shell.py", line 820, in main
712s     OpenStackComputeShell().main(argv)
712s   File "/usr/lib/python3/dist-packages/novaclient/shell.py", line 742, in main
712s     args.func(self.cs, args)
712s   File "/usr/lib/python3/dist-packages/novaclient/v2/shell.py", line 980, in do_boot
712s     _poll_for_status(cs.servers.get, server.id, 'building', ['active'])
712s   File "/usr/lib/python3/dist-packages/novaclient/v2/shell.py", line 1019, in _poll_for_status
712s     raise exceptions.ResourceInErrorState(obj)
712s novaclient.exceptions.ResourceInErrorState: <Server: adt-plucky-ppc64el-htslib-20241129-211904-juju-7f2275-prod-proposed-migration-environment-20-0ca74b99-ef6e-43d6-9706-6668d4f93da1>
712s ERROR (ResourceInErrorState): <Server: adt-plucky-ppc64el-htslib-20241129-211904-juju-7f2275-prod-proposed-migration-environment-20-0ca74b99-ef6e-43d6-9706-6668d4f93da1>
712s 
712s Error building server
714s autopkgtest [21:30:58]: testbed dpkg architecture: ppc64el
714s autopkgtest [21:30:58]: testbed apt version: 2.9.14ubuntu1
714s autopkgtest [21:30:58]: @@@@@@@@@@@@@@@@@@@@ test bed setup
715s autopkgtest [21:30:59]: testbed release detected to be: None
715s autopkgtest [21:30:59]: updating testbed package index (apt update)
716s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease [73.9 kB]
716s Hit:2 http://ftpmaster.internal/ubuntu plucky InRelease
716s Hit:3 http://ftpmaster.internal/ubuntu plucky-updates InRelease
716s Hit:4 http://ftpmaster.internal/ubuntu plucky-security InRelease
716s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/restricted Sources [9708 B]
716s Get:6 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse Sources [14.4 kB]
716s Get:7 http://ftpmaster.internal/ubuntu plucky-proposed/universe Sources [808 kB]
716s Get:8 http://ftpmaster.internal/ubuntu plucky-proposed/main Sources [62.8 kB]
716s Get:9 http://ftpmaster.internal/ubuntu plucky-proposed/main ppc64el Packages [94.6 kB]
716s Get:10 http://ftpmaster.internal/ubuntu plucky-proposed/restricted ppc64el Packages [928 B]
716s Get:11 http://ftpmaster.internal/ubuntu plucky-proposed/universe ppc64el Packages [658 kB]
716s Get:12 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse ppc64el Packages [9968 B]
717s Fetched 1732 kB in 1s (1744 kB/s)
718s Reading package lists...
718s Reading package lists...
718s Building dependency tree...
718s Reading state information...
719s Calculating upgrade...
719s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
719s Reading package lists...
719s Building dependency tree...
719s Reading state information...
720s 0 upgraded, 0 newly installed, 0 to remove and 2 not upgraded.
720s autopkgtest [21:31:04]: upgrading testbed (apt dist-upgrade and autopurge)
720s Reading package lists...
720s Building dependency tree...
720s Reading state information...
720s Calculating upgrade...Starting pkgProblemResolver with broken count: 0
720s Starting 2 pkgProblemResolver with broken count: 0
720s Done
721s Entering ResolveByKeep
721s 
721s The following NEW packages will be installed:
721s   openssl-provider-legacy
721s The following packages will be upgraded:
721s   libssl3t64 openssl
722s 2 upgraded, 1 newly installed, 0 to remove and 0 not upgraded.
722s Need to get 3749 kB of archives.
722s After this operation, 792 kB of additional disk space will be used.
722s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed/main ppc64el openssl-provider-legacy ppc64el 3.4.0-1ubuntu1 [44.4 kB]
722s Get:2 http://ftpmaster.internal/ubuntu plucky-proposed/main ppc64el libssl3t64 ppc64el 3.4.0-1ubuntu1 [2503 kB]
723s Get:3 http://ftpmaster.internal/ubuntu plucky-proposed/main ppc64el openssl ppc64el 3.4.0-1ubuntu1 [1202 kB]
724s Fetched 3749 kB in 2s (1669 kB/s)
724s (Reading database ... 
(Reading database ... 5%
(Reading database ... 10%
(Reading database ... 15%
(Reading database ... 20%
(Reading database ... 25%
(Reading database ... 30%
(Reading database ... 35%
(Reading database ... 40%
(Reading database ... 45%
(Reading database ... 50%
(Reading database ... 55%
(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 74178 files and directories currently installed.)
724s Preparing to unpack .../libssl3t64_3.4.0-1ubuntu1_ppc64el.deb ...
724s Unpacking libssl3t64:ppc64el (3.4.0-1ubuntu1) over (3.3.1-2ubuntu2) ...
724s Selecting previously unselected package openssl-provider-legacy.
724s Preparing to unpack .../openssl-provider-legacy_3.4.0-1ubuntu1_ppc64el.deb ...
724s Unpacking openssl-provider-legacy (3.4.0-1ubuntu1) ...
724s Setting up libssl3t64:ppc64el (3.4.0-1ubuntu1) ...
724s Setting up openssl-provider-legacy (3.4.0-1ubuntu1) ...
724s (Reading database ... 
(Reading database ... 5%
(Reading database ... 10%
(Reading database ... 15%
(Reading database ... 20%
(Reading database ... 25%
(Reading database ... 30%
(Reading database ... 35%
(Reading database ... 40%
(Reading database ... 45%
(Reading database ... 50%
(Reading database ... 55%
(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 74181 files and directories currently installed.)
724s Preparing to unpack .../openssl_3.4.0-1ubuntu1_ppc64el.deb ...
724s Unpacking openssl (3.4.0-1ubuntu1) over (3.3.1-2ubuntu2) ...
725s Setting up openssl (3.4.0-1ubuntu1) ...
725s Installing new version of config file /etc/ssl/openssl.cnf ...
725s Processing triggers for man-db (2.13.0-1) ...
725s Processing triggers for libc-bin (2.40-1ubuntu3) ...
726s Reading package lists...
726s Building dependency tree...
726s Reading state information...
726s Starting pkgProblemResolver with broken count: 0
726s Starting 2 pkgProblemResolver with broken count: 0
726s Done
727s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
729s autopkgtest [21:31:13]: testbed running kernel: Linux 6.11.0-8-generic #8-Ubuntu SMP Mon Sep 16 13:49:23 UTC 2024
729s autopkgtest [21:31:13]: @@@@@@@@@@@@@@@@@@@@ apt-source htslib
733s Get:1 http://ftpmaster.internal/ubuntu plucky/universe htslib 1.20+ds-2 (dsc) [2090 B]
733s Get:2 http://ftpmaster.internal/ubuntu plucky/universe htslib 1.20+ds-2 (tar) [1531 kB]
733s Get:3 http://ftpmaster.internal/ubuntu plucky/universe htslib 1.20+ds-2 (diff) [21.3 kB]
733s gpgv: Signature made Thu Oct 31 17:36:10 2024 UTC
733s gpgv:                using RSA key D54C3BFAFFB042DE382DA5D741CE7F0B9F1B8B32
733s gpgv: Can't check signature: No public key
733s dpkg-source: warning: cannot verify inline signature for ./htslib_1.20+ds-2.dsc: no acceptable signature found
733s autopkgtest [21:31:17]: testing package htslib version 1.20+ds-2
734s autopkgtest [21:31:18]: build not needed
735s autopkgtest [21:31:19]: test run-unit-test: preparing testbed
735s Reading package lists...
735s Building dependency tree...
735s Reading state information...
736s Starting pkgProblemResolver with broken count: 0
736s Starting 2 pkgProblemResolver with broken count: 0
736s Done
736s The following NEW packages will be installed:
736s   autoconf automake autopoint autotools-dev build-essential comerr-dev cpp
736s   cpp-14 cpp-14-powerpc64le-linux-gnu cpp-powerpc64le-linux-gnu debhelper
736s   debugedit dh-autoreconf dh-strip-nondeterminism dwz g++ g++-14
736s   g++-14-powerpc64le-linux-gnu g++-powerpc64le-linux-gnu gcc gcc-14
736s   gcc-14-powerpc64le-linux-gnu gcc-powerpc64le-linux-gnu gettext htslib-test
736s   intltool-debian krb5-multidev libarchive-zip-perl libasan8 libbrotli-dev
736s   libbz2-dev libcc1-0 libcurl4-gnutls-dev libdebhelper-perl libdeflate-dev
736s   libdeflate0 libevent-2.1-7t64 libfile-stripnondeterminism-perl libgcc-14-dev
736s   libgmp-dev libgmpxx4ldbl libgnutls-dane0t64 libgnutls-openssl27t64
736s   libgnutls28-dev libgomp1 libgssrpc4t64 libhts-dev libhts3t64
736s   libhtscodecs-dev libhtscodecs2 libidn2-dev libisl23 libitm1
736s   libkadm5clnt-mit12 libkadm5srv-mit12 libkdb5-10t64 libkrb5-dev libldap-dev
736s   liblsan0 liblzma-dev libmpc3 libnghttp2-dev libp11-kit-dev libpkgconf3
736s   libpsl-dev libquadmath0 librtmp-dev libssh2-1-dev libssl-dev
736s   libstdc++-14-dev libtasn1-6-dev libtool libtsan2 libubsan1 libunbound8
736s   libzstd-dev m4 nettle-dev pkgconf pkgconf-bin po-debconf tabix zlib1g-dev
736s 0 upgraded, 83 newly installed, 0 to remove and 0 not upgraded.
736s Need to get 85.3 MB of archives.
736s After this operation, 302 MB of additional disk space will be used.
736s Get:1 http://ftpmaster.internal/ubuntu plucky/main ppc64el m4 ppc64el 1.4.19-4build1 [278 kB]
737s Get:2 http://ftpmaster.internal/ubuntu plucky/main ppc64el autoconf all 2.72-3 [382 kB]
737s Get:3 http://ftpmaster.internal/ubuntu plucky/main ppc64el autotools-dev all 20220109.1 [44.9 kB]
737s Get:4 http://ftpmaster.internal/ubuntu plucky/main ppc64el automake all 1:1.16.5-1.3ubuntu1 [558 kB]
737s Get:5 http://ftpmaster.internal/ubuntu plucky/main ppc64el autopoint all 0.22.5-2 [616 kB]
737s Get:6 http://ftpmaster.internal/ubuntu plucky/main ppc64el libisl23 ppc64el 0.27-1 [882 kB]
738s Get:7 http://ftpmaster.internal/ubuntu plucky/main ppc64el libmpc3 ppc64el 1.3.1-1build2 [62.1 kB]
738s Get:8 http://ftpmaster.internal/ubuntu plucky/main ppc64el cpp-14-powerpc64le-linux-gnu ppc64el 14.2.0-8ubuntu1 [10.5 MB]
739s Get:9 http://ftpmaster.internal/ubuntu plucky/main ppc64el cpp-14 ppc64el 14.2.0-8ubuntu1 [1034 B]
739s Get:10 http://ftpmaster.internal/ubuntu plucky/main ppc64el cpp-powerpc64le-linux-gnu ppc64el 4:14.1.0-2ubuntu1 [5456 B]
739s Get:11 http://ftpmaster.internal/ubuntu plucky/main ppc64el cpp ppc64el 4:14.1.0-2ubuntu1 [22.5 kB]
739s Get:12 http://ftpmaster.internal/ubuntu plucky/main ppc64el libcc1-0 ppc64el 14.2.0-8ubuntu1 [48.1 kB]
739s Get:13 http://ftpmaster.internal/ubuntu plucky/main ppc64el libgomp1 ppc64el 14.2.0-8ubuntu1 [161 kB]
739s Get:14 http://ftpmaster.internal/ubuntu plucky/main ppc64el libitm1 ppc64el 14.2.0-8ubuntu1 [31.9 kB]
739s Get:15 http://ftpmaster.internal/ubuntu plucky/main ppc64el libasan8 ppc64el 14.2.0-8ubuntu1 [2945 kB]
739s Get:16 http://ftpmaster.internal/ubuntu plucky/main ppc64el liblsan0 ppc64el 14.2.0-8ubuntu1 [1322 kB]
739s Get:17 http://ftpmaster.internal/ubuntu plucky/main ppc64el libtsan2 ppc64el 14.2.0-8ubuntu1 [2695 kB]
740s Get:18 http://ftpmaster.internal/ubuntu plucky/main ppc64el libubsan1 ppc64el 14.2.0-8ubuntu1 [1191 kB]
740s Get:19 http://ftpmaster.internal/ubuntu plucky/main ppc64el libquadmath0 ppc64el 14.2.0-8ubuntu1 [158 kB]
740s Get:20 http://ftpmaster.internal/ubuntu plucky/main ppc64el libgcc-14-dev ppc64el 14.2.0-8ubuntu1 [1619 kB]
740s Get:21 http://ftpmaster.internal/ubuntu plucky/main ppc64el gcc-14-powerpc64le-linux-gnu ppc64el 14.2.0-8ubuntu1 [20.6 MB]
741s Get:22 http://ftpmaster.internal/ubuntu plucky/main ppc64el gcc-14 ppc64el 14.2.0-8ubuntu1 [528 kB]
741s Get:23 http://ftpmaster.internal/ubuntu plucky/main ppc64el gcc-powerpc64le-linux-gnu ppc64el 4:14.1.0-2ubuntu1 [1222 B]
741s Get:24 http://ftpmaster.internal/ubuntu plucky/main ppc64el gcc ppc64el 4:14.1.0-2ubuntu1 [5006 B]
741s Get:25 http://ftpmaster.internal/ubuntu plucky/main ppc64el libstdc++-14-dev ppc64el 14.2.0-8ubuntu1 [2673 kB]
741s Get:26 http://ftpmaster.internal/ubuntu plucky/main ppc64el g++-14-powerpc64le-linux-gnu ppc64el 14.2.0-8ubuntu1 [12.0 MB]
742s Get:27 http://ftpmaster.internal/ubuntu plucky/main ppc64el g++-14 ppc64el 14.2.0-8ubuntu1 [19.9 kB]
742s Get:28 http://ftpmaster.internal/ubuntu plucky/main ppc64el g++-powerpc64le-linux-gnu ppc64el 4:14.1.0-2ubuntu1 [968 B]
742s Get:29 http://ftpmaster.internal/ubuntu plucky/main ppc64el g++ ppc64el 4:14.1.0-2ubuntu1 [1090 B]
742s Get:30 http://ftpmaster.internal/ubuntu plucky/main ppc64el build-essential ppc64el 12.10ubuntu1 [4936 B]
742s Get:31 http://ftpmaster.internal/ubuntu plucky/main ppc64el libdebhelper-perl all 13.20ubuntu1 [94.2 kB]
742s Get:32 http://ftpmaster.internal/ubuntu plucky/main ppc64el libtool all 2.4.7-8 [166 kB]
742s Get:33 http://ftpmaster.internal/ubuntu plucky/main ppc64el dh-autoreconf all 20 [16.1 kB]
742s Get:34 http://ftpmaster.internal/ubuntu plucky/main ppc64el libarchive-zip-perl all 1.68-1 [90.2 kB]
742s Get:35 http://ftpmaster.internal/ubuntu plucky/main ppc64el libfile-stripnondeterminism-perl all 1.14.0-1 [20.1 kB]
742s Get:36 http://ftpmaster.internal/ubuntu plucky/main ppc64el dh-strip-nondeterminism all 1.14.0-1 [5058 B]
742s Get:37 http://ftpmaster.internal/ubuntu plucky/main ppc64el debugedit ppc64el 1:5.1-1 [52.1 kB]
742s Get:38 http://ftpmaster.internal/ubuntu plucky/main ppc64el dwz ppc64el 0.15-1build6 [142 kB]
742s Get:39 http://ftpmaster.internal/ubuntu plucky/main ppc64el gettext ppc64el 0.22.5-2 [1082 kB]
742s Get:40 http://ftpmaster.internal/ubuntu plucky/main ppc64el intltool-debian all 0.35.0+20060710.6 [23.2 kB]
742s Get:41 http://ftpmaster.internal/ubuntu plucky/main ppc64el po-debconf all 1.0.21+nmu1 [233 kB]
742s Get:42 http://ftpmaster.internal/ubuntu plucky/main ppc64el debhelper all 13.20ubuntu1 [893 kB]
742s Get:43 http://ftpmaster.internal/ubuntu plucky/universe ppc64el htslib-test all 1.20+ds-2 [1145 kB]
742s Get:44 http://ftpmaster.internal/ubuntu plucky/main ppc64el comerr-dev ppc64el 2.1-1.47.1-1ubuntu1 [45.3 kB]
742s Get:45 http://ftpmaster.internal/ubuntu plucky/main ppc64el libgssrpc4t64 ppc64el 1.21.3-3 [65.2 kB]
742s Get:46 http://ftpmaster.internal/ubuntu plucky/main ppc64el libkadm5clnt-mit12 ppc64el 1.21.3-3 [44.0 kB]
742s Get:47 http://ftpmaster.internal/ubuntu plucky/main ppc64el libkdb5-10t64 ppc64el 1.21.3-3 [46.9 kB]
742s Get:48 http://ftpmaster.internal/ubuntu plucky/main ppc64el libkadm5srv-mit12 ppc64el 1.21.3-3 [61.4 kB]
742s Get:49 http://ftpmaster.internal/ubuntu plucky/main ppc64el krb5-multidev ppc64el 1.21.3-3 [125 kB]
742s Get:50 http://ftpmaster.internal/ubuntu plucky/main ppc64el libbrotli-dev ppc64el 1.1.0-2build3 [427 kB]
742s Get:51 http://ftpmaster.internal/ubuntu plucky/main ppc64el libbz2-dev ppc64el 1.0.8-6 [50.2 kB]
742s Get:52 http://ftpmaster.internal/ubuntu plucky/main ppc64el libevent-2.1-7t64 ppc64el 2.1.12-stable-10 [172 kB]
742s Get:53 http://ftpmaster.internal/ubuntu plucky/main ppc64el libunbound8 ppc64el 1.20.0-1ubuntu2.1 [546 kB]
742s Get:54 http://ftpmaster.internal/ubuntu plucky/main ppc64el libgnutls-dane0t64 ppc64el 3.8.8-2ubuntu1 [25.1 kB]
742s Get:55 http://ftpmaster.internal/ubuntu plucky/main ppc64el libgnutls-openssl27t64 ppc64el 3.8.8-2ubuntu1 [24.7 kB]
743s Get:56 http://ftpmaster.internal/ubuntu plucky/main ppc64el libidn2-dev ppc64el 2.3.7-2build2 [124 kB]
743s Get:57 http://ftpmaster.internal/ubuntu plucky/main ppc64el libp11-kit-dev ppc64el 0.25.5-2ubuntu1 [22.7 kB]
743s Get:58 http://ftpmaster.internal/ubuntu plucky/main ppc64el libtasn1-6-dev ppc64el 4.19.0-3build1 [104 kB]
743s Get:59 http://ftpmaster.internal/ubuntu plucky/main ppc64el libgmpxx4ldbl ppc64el 2:6.3.0+dfsg-2ubuntu7 [10.2 kB]
743s Get:60 http://ftpmaster.internal/ubuntu plucky/main ppc64el libgmp-dev ppc64el 2:6.3.0+dfsg-2ubuntu7 [371 kB]
743s Get:61 http://ftpmaster.internal/ubuntu plucky/main ppc64el nettle-dev ppc64el 3.10-1 [1231 kB]
743s Get:62 http://ftpmaster.internal/ubuntu plucky/main ppc64el libgnutls28-dev ppc64el 3.8.8-2ubuntu1 [1215 kB]
743s Get:63 http://ftpmaster.internal/ubuntu plucky/main ppc64el libkrb5-dev ppc64el 1.21.3-3 [11.9 kB]
743s Get:64 http://ftpmaster.internal/ubuntu plucky/main ppc64el libldap-dev ppc64el 2.6.8+dfsg-1~exp4ubuntu3 [375 kB]
743s Get:65 http://ftpmaster.internal/ubuntu plucky/main ppc64el libpkgconf3 ppc64el 1.8.1-4 [37.1 kB]
743s Get:66 http://ftpmaster.internal/ubuntu plucky/main ppc64el pkgconf-bin ppc64el 1.8.1-4 [22.5 kB]
743s Get:67 http://ftpmaster.internal/ubuntu plucky/main ppc64el pkgconf ppc64el 1.8.1-4 [16.7 kB]
743s Get:68 http://ftpmaster.internal/ubuntu plucky/main ppc64el libnghttp2-dev ppc64el 1.64.0-1 [138 kB]
743s Get:69 http://ftpmaster.internal/ubuntu plucky/main ppc64el libpsl-dev ppc64el 0.21.2-1.1build1 [79.1 kB]
743s Get:70 http://ftpmaster.internal/ubuntu plucky/main ppc64el zlib1g-dev ppc64el 1:1.3.dfsg+really1.3.1-1ubuntu1 [902 kB]
743s Get:71 http://ftpmaster.internal/ubuntu plucky/main ppc64el librtmp-dev ppc64el 2.4+20151223.gitfa8646d.1-2build7 [76.1 kB]
743s Get:72 http://ftpmaster.internal/ubuntu plucky-proposed/main ppc64el libssl-dev ppc64el 3.4.0-1ubuntu1 [3141 kB]
743s Get:73 http://ftpmaster.internal/ubuntu plucky/main ppc64el libssh2-1-dev ppc64el 1.11.1-1 [316 kB]
743s Get:74 http://ftpmaster.internal/ubuntu plucky/main ppc64el libzstd-dev ppc64el 1.5.6+dfsg-1 [489 kB]
743s Get:75 http://ftpmaster.internal/ubuntu plucky/main ppc64el libcurl4-gnutls-dev ppc64el 8.11.0-1ubuntu2 [590 kB]
743s Get:76 http://ftpmaster.internal/ubuntu plucky/main ppc64el libdeflate0 ppc64el 1.22-1 [63.3 kB]
743s Get:77 http://ftpmaster.internal/ubuntu plucky/main ppc64el libdeflate-dev ppc64el 1.22-1 [70.8 kB]
743s Get:78 http://ftpmaster.internal/ubuntu plucky/universe ppc64el libhtscodecs2 ppc64el 1.6.1-1 [113 kB]
743s Get:79 http://ftpmaster.internal/ubuntu plucky/universe ppc64el libhts3t64 ppc64el 1.20+ds-2 [574 kB]
743s Get:80 http://ftpmaster.internal/ubuntu plucky/main ppc64el liblzma-dev ppc64el 5.6.3-1 [208 kB]
743s Get:81 http://ftpmaster.internal/ubuntu plucky/universe ppc64el libhts-dev ppc64el 1.20+ds-2 [6379 kB]
743s Get:82 http://ftpmaster.internal/ubuntu plucky/universe ppc64el libhtscodecs-dev ppc64el 1.6.1-1 [3009 kB]
744s Get:83 http://ftpmaster.internal/ubuntu plucky/universe ppc64el tabix ppc64el 1.20+ds-2 [724 kB]
744s Fetched 85.3 MB in 7s (11.4 MB/s)
744s Selecting previously unselected package m4.
744s (Reading database ... 
(Reading database ... 5%
(Reading database ... 10%
(Reading database ... 15%
(Reading database ... 20%
(Reading database ... 25%
(Reading database ... 30%
(Reading database ... 35%
(Reading database ... 40%
(Reading database ... 45%
(Reading database ... 50%
(Reading database ... 55%
(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 74183 files and directories currently installed.)
744s Preparing to unpack .../00-m4_1.4.19-4build1_ppc64el.deb ...
744s Unpacking m4 (1.4.19-4build1) ...
744s Selecting previously unselected package autoconf.
744s Preparing to unpack .../01-autoconf_2.72-3_all.deb ...
744s Unpacking autoconf (2.72-3) ...
744s Selecting previously unselected package autotools-dev.
744s Preparing to unpack .../02-autotools-dev_20220109.1_all.deb ...
744s Unpacking autotools-dev (20220109.1) ...
744s Selecting previously unselected package automake.
744s Preparing to unpack .../03-automake_1%3a1.16.5-1.3ubuntu1_all.deb ...
744s Unpacking automake (1:1.16.5-1.3ubuntu1) ...
744s Selecting previously unselected package autopoint.
744s Preparing to unpack .../04-autopoint_0.22.5-2_all.deb ...
744s Unpacking autopoint (0.22.5-2) ...
744s Selecting previously unselected package libisl23:ppc64el.
744s Preparing to unpack .../05-libisl23_0.27-1_ppc64el.deb ...
744s Unpacking libisl23:ppc64el (0.27-1) ...
744s Selecting previously unselected package libmpc3:ppc64el.
744s Preparing to unpack .../06-libmpc3_1.3.1-1build2_ppc64el.deb ...
744s Unpacking libmpc3:ppc64el (1.3.1-1build2) ...
744s Selecting previously unselected package cpp-14-powerpc64le-linux-gnu.
744s Preparing to unpack .../07-cpp-14-powerpc64le-linux-gnu_14.2.0-8ubuntu1_ppc64el.deb ...
744s Unpacking cpp-14-powerpc64le-linux-gnu (14.2.0-8ubuntu1) ...
744s Selecting previously unselected package cpp-14.
744s Preparing to unpack .../08-cpp-14_14.2.0-8ubuntu1_ppc64el.deb ...
744s Unpacking cpp-14 (14.2.0-8ubuntu1) ...
744s Selecting previously unselected package cpp-powerpc64le-linux-gnu.
744s Preparing to unpack .../09-cpp-powerpc64le-linux-gnu_4%3a14.1.0-2ubuntu1_ppc64el.deb ...
744s Unpacking cpp-powerpc64le-linux-gnu (4:14.1.0-2ubuntu1) ...
744s Selecting previously unselected package cpp.
744s Preparing to unpack .../10-cpp_4%3a14.1.0-2ubuntu1_ppc64el.deb ...
744s Unpacking cpp (4:14.1.0-2ubuntu1) ...
744s Selecting previously unselected package libcc1-0:ppc64el.
744s Preparing to unpack .../11-libcc1-0_14.2.0-8ubuntu1_ppc64el.deb ...
744s Unpacking libcc1-0:ppc64el (14.2.0-8ubuntu1) ...
745s Selecting previously unselected package libgomp1:ppc64el.
745s Preparing to unpack .../12-libgomp1_14.2.0-8ubuntu1_ppc64el.deb ...
745s Unpacking libgomp1:ppc64el (14.2.0-8ubuntu1) ...
745s Selecting previously unselected package libitm1:ppc64el.
745s Preparing to unpack .../13-libitm1_14.2.0-8ubuntu1_ppc64el.deb ...
745s Unpacking libitm1:ppc64el (14.2.0-8ubuntu1) ...
745s Selecting previously unselected package libasan8:ppc64el.
745s Preparing to unpack .../14-libasan8_14.2.0-8ubuntu1_ppc64el.deb ...
745s Unpacking libasan8:ppc64el (14.2.0-8ubuntu1) ...
745s Selecting previously unselected package liblsan0:ppc64el.
745s Preparing to unpack .../15-liblsan0_14.2.0-8ubuntu1_ppc64el.deb ...
745s Unpacking liblsan0:ppc64el (14.2.0-8ubuntu1) ...
745s Selecting previously unselected package libtsan2:ppc64el.
745s Preparing to unpack .../16-libtsan2_14.2.0-8ubuntu1_ppc64el.deb ...
745s Unpacking libtsan2:ppc64el (14.2.0-8ubuntu1) ...
745s Selecting previously unselected package libubsan1:ppc64el.
745s Preparing to unpack .../17-libubsan1_14.2.0-8ubuntu1_ppc64el.deb ...
745s Unpacking libubsan1:ppc64el (14.2.0-8ubuntu1) ...
745s Selecting previously unselected package libquadmath0:ppc64el.
745s Preparing to unpack .../18-libquadmath0_14.2.0-8ubuntu1_ppc64el.deb ...
745s Unpacking libquadmath0:ppc64el (14.2.0-8ubuntu1) ...
745s Selecting previously unselected package libgcc-14-dev:ppc64el.
745s Preparing to unpack .../19-libgcc-14-dev_14.2.0-8ubuntu1_ppc64el.deb ...
745s Unpacking libgcc-14-dev:ppc64el (14.2.0-8ubuntu1) ...
745s Selecting previously unselected package gcc-14-powerpc64le-linux-gnu.
745s Preparing to unpack .../20-gcc-14-powerpc64le-linux-gnu_14.2.0-8ubuntu1_ppc64el.deb ...
745s Unpacking gcc-14-powerpc64le-linux-gnu (14.2.0-8ubuntu1) ...
745s Selecting previously unselected package gcc-14.
745s Preparing to unpack .../21-gcc-14_14.2.0-8ubuntu1_ppc64el.deb ...
745s Unpacking gcc-14 (14.2.0-8ubuntu1) ...
745s Selecting previously unselected package gcc-powerpc64le-linux-gnu.
745s Preparing to unpack .../22-gcc-powerpc64le-linux-gnu_4%3a14.1.0-2ubuntu1_ppc64el.deb ...
745s Unpacking gcc-powerpc64le-linux-gnu (4:14.1.0-2ubuntu1) ...
745s Selecting previously unselected package gcc.
745s Preparing to unpack .../23-gcc_4%3a14.1.0-2ubuntu1_ppc64el.deb ...
745s Unpacking gcc (4:14.1.0-2ubuntu1) ...
745s Selecting previously unselected package libstdc++-14-dev:ppc64el.
745s Preparing to unpack .../24-libstdc++-14-dev_14.2.0-8ubuntu1_ppc64el.deb ...
745s Unpacking libstdc++-14-dev:ppc64el (14.2.0-8ubuntu1) ...
745s Selecting previously unselected package g++-14-powerpc64le-linux-gnu.
745s Preparing to unpack .../25-g++-14-powerpc64le-linux-gnu_14.2.0-8ubuntu1_ppc64el.deb ...
745s Unpacking g++-14-powerpc64le-linux-gnu (14.2.0-8ubuntu1) ...
746s Selecting previously unselected package g++-14.
746s Preparing to unpack .../26-g++-14_14.2.0-8ubuntu1_ppc64el.deb ...
746s Unpacking g++-14 (14.2.0-8ubuntu1) ...
746s Selecting previously unselected package g++-powerpc64le-linux-gnu.
746s Preparing to unpack .../27-g++-powerpc64le-linux-gnu_4%3a14.1.0-2ubuntu1_ppc64el.deb ...
746s Unpacking g++-powerpc64le-linux-gnu (4:14.1.0-2ubuntu1) ...
746s Selecting previously unselected package g++.
746s Preparing to unpack .../28-g++_4%3a14.1.0-2ubuntu1_ppc64el.deb ...
746s Unpacking g++ (4:14.1.0-2ubuntu1) ...
746s Selecting previously unselected package build-essential.
746s Preparing to unpack .../29-build-essential_12.10ubuntu1_ppc64el.deb ...
746s Unpacking build-essential (12.10ubuntu1) ...
746s Selecting previously unselected package libdebhelper-perl.
746s Preparing to unpack .../30-libdebhelper-perl_13.20ubuntu1_all.deb ...
746s Unpacking libdebhelper-perl (13.20ubuntu1) ...
746s Selecting previously unselected package libtool.
746s Preparing to unpack .../31-libtool_2.4.7-8_all.deb ...
746s Unpacking libtool (2.4.7-8) ...
746s Selecting previously unselected package dh-autoreconf.
746s Preparing to unpack .../32-dh-autoreconf_20_all.deb ...
746s Unpacking dh-autoreconf (20) ...
746s Selecting previously unselected package libarchive-zip-perl.
746s Preparing to unpack .../33-libarchive-zip-perl_1.68-1_all.deb ...
746s Unpacking libarchive-zip-perl (1.68-1) ...
746s Selecting previously unselected package libfile-stripnondeterminism-perl.
746s Preparing to unpack .../34-libfile-stripnondeterminism-perl_1.14.0-1_all.deb ...
746s Unpacking libfile-stripnondeterminism-perl (1.14.0-1) ...
746s Selecting previously unselected package dh-strip-nondeterminism.
746s Preparing to unpack .../35-dh-strip-nondeterminism_1.14.0-1_all.deb ...
746s Unpacking dh-strip-nondeterminism (1.14.0-1) ...
746s Selecting previously unselected package debugedit.
746s Preparing to unpack .../36-debugedit_1%3a5.1-1_ppc64el.deb ...
746s Unpacking debugedit (1:5.1-1) ...
746s Selecting previously unselected package dwz.
746s Preparing to unpack .../37-dwz_0.15-1build6_ppc64el.deb ...
746s Unpacking dwz (0.15-1build6) ...
746s Selecting previously unselected package gettext.
746s Preparing to unpack .../38-gettext_0.22.5-2_ppc64el.deb ...
746s Unpacking gettext (0.22.5-2) ...
746s Selecting previously unselected package intltool-debian.
746s Preparing to unpack .../39-intltool-debian_0.35.0+20060710.6_all.deb ...
746s Unpacking intltool-debian (0.35.0+20060710.6) ...
746s Selecting previously unselected package po-debconf.
746s Preparing to unpack .../40-po-debconf_1.0.21+nmu1_all.deb ...
746s Unpacking po-debconf (1.0.21+nmu1) ...
746s Selecting previously unselected package debhelper.
746s Preparing to unpack .../41-debhelper_13.20ubuntu1_all.deb ...
746s Unpacking debhelper (13.20ubuntu1) ...
746s Selecting previously unselected package htslib-test.
746s Preparing to unpack .../42-htslib-test_1.20+ds-2_all.deb ...
746s Unpacking htslib-test (1.20+ds-2) ...
746s Selecting previously unselected package comerr-dev:ppc64el.
746s Preparing to unpack .../43-comerr-dev_2.1-1.47.1-1ubuntu1_ppc64el.deb ...
746s Unpacking comerr-dev:ppc64el (2.1-1.47.1-1ubuntu1) ...
746s Selecting previously unselected package libgssrpc4t64:ppc64el.
746s Preparing to unpack .../44-libgssrpc4t64_1.21.3-3_ppc64el.deb ...
746s Unpacking libgssrpc4t64:ppc64el (1.21.3-3) ...
746s Selecting previously unselected package libkadm5clnt-mit12:ppc64el.
746s Preparing to unpack .../45-libkadm5clnt-mit12_1.21.3-3_ppc64el.deb ...
746s Unpacking libkadm5clnt-mit12:ppc64el (1.21.3-3) ...
746s Selecting previously unselected package libkdb5-10t64:ppc64el.
746s Preparing to unpack .../46-libkdb5-10t64_1.21.3-3_ppc64el.deb ...
746s Unpacking libkdb5-10t64:ppc64el (1.21.3-3) ...
746s Selecting previously unselected package libkadm5srv-mit12:ppc64el.
746s Preparing to unpack .../47-libkadm5srv-mit12_1.21.3-3_ppc64el.deb ...
746s Unpacking libkadm5srv-mit12:ppc64el (1.21.3-3) ...
746s Selecting previously unselected package krb5-multidev:ppc64el.
746s Preparing to unpack .../48-krb5-multidev_1.21.3-3_ppc64el.deb ...
746s Unpacking krb5-multidev:ppc64el (1.21.3-3) ...
746s Selecting previously unselected package libbrotli-dev:ppc64el.
746s Preparing to unpack .../49-libbrotli-dev_1.1.0-2build3_ppc64el.deb ...
746s Unpacking libbrotli-dev:ppc64el (1.1.0-2build3) ...
746s Selecting previously unselected package libbz2-dev:ppc64el.
746s Preparing to unpack .../50-libbz2-dev_1.0.8-6_ppc64el.deb ...
746s Unpacking libbz2-dev:ppc64el (1.0.8-6) ...
746s Selecting previously unselected package libevent-2.1-7t64:ppc64el.
746s Preparing to unpack .../51-libevent-2.1-7t64_2.1.12-stable-10_ppc64el.deb ...
746s Unpacking libevent-2.1-7t64:ppc64el (2.1.12-stable-10) ...
746s Selecting previously unselected package libunbound8:ppc64el.
746s Preparing to unpack .../52-libunbound8_1.20.0-1ubuntu2.1_ppc64el.deb ...
746s Unpacking libunbound8:ppc64el (1.20.0-1ubuntu2.1) ...
746s Selecting previously unselected package libgnutls-dane0t64:ppc64el.
746s Preparing to unpack .../53-libgnutls-dane0t64_3.8.8-2ubuntu1_ppc64el.deb ...
746s Unpacking libgnutls-dane0t64:ppc64el (3.8.8-2ubuntu1) ...
746s Selecting previously unselected package libgnutls-openssl27t64:ppc64el.
746s Preparing to unpack .../54-libgnutls-openssl27t64_3.8.8-2ubuntu1_ppc64el.deb ...
746s Unpacking libgnutls-openssl27t64:ppc64el (3.8.8-2ubuntu1) ...
746s Selecting previously unselected package libidn2-dev:ppc64el.
746s Preparing to unpack .../55-libidn2-dev_2.3.7-2build2_ppc64el.deb ...
746s Unpacking libidn2-dev:ppc64el (2.3.7-2build2) ...
746s Selecting previously unselected package libp11-kit-dev:ppc64el.
746s Preparing to unpack .../56-libp11-kit-dev_0.25.5-2ubuntu1_ppc64el.deb ...
746s Unpacking libp11-kit-dev:ppc64el (0.25.5-2ubuntu1) ...
746s Selecting previously unselected package libtasn1-6-dev:ppc64el.
746s Preparing to unpack .../57-libtasn1-6-dev_4.19.0-3build1_ppc64el.deb ...
746s Unpacking libtasn1-6-dev:ppc64el (4.19.0-3build1) ...
746s Selecting previously unselected package libgmpxx4ldbl:ppc64el.
746s Preparing to unpack .../58-libgmpxx4ldbl_2%3a6.3.0+dfsg-2ubuntu7_ppc64el.deb ...
746s Unpacking libgmpxx4ldbl:ppc64el (2:6.3.0+dfsg-2ubuntu7) ...
746s Selecting previously unselected package libgmp-dev:ppc64el.
746s Preparing to unpack .../59-libgmp-dev_2%3a6.3.0+dfsg-2ubuntu7_ppc64el.deb ...
746s Unpacking libgmp-dev:ppc64el (2:6.3.0+dfsg-2ubuntu7) ...
746s Selecting previously unselected package nettle-dev:ppc64el.
746s Preparing to unpack .../60-nettle-dev_3.10-1_ppc64el.deb ...
746s Unpacking nettle-dev:ppc64el (3.10-1) ...
746s Selecting previously unselected package libgnutls28-dev:ppc64el.
746s Preparing to unpack .../61-libgnutls28-dev_3.8.8-2ubuntu1_ppc64el.deb ...
746s Unpacking libgnutls28-dev:ppc64el (3.8.8-2ubuntu1) ...
746s Selecting previously unselected package libkrb5-dev:ppc64el.
746s Preparing to unpack .../62-libkrb5-dev_1.21.3-3_ppc64el.deb ...
746s Unpacking libkrb5-dev:ppc64el (1.21.3-3) ...
746s Selecting previously unselected package libldap-dev:ppc64el.
746s Preparing to unpack .../63-libldap-dev_2.6.8+dfsg-1~exp4ubuntu3_ppc64el.deb ...
746s Unpacking libldap-dev:ppc64el (2.6.8+dfsg-1~exp4ubuntu3) ...
747s Selecting previously unselected package libpkgconf3:ppc64el.
747s Preparing to unpack .../64-libpkgconf3_1.8.1-4_ppc64el.deb ...
747s Unpacking libpkgconf3:ppc64el (1.8.1-4) ...
747s Selecting previously unselected package pkgconf-bin.
747s Preparing to unpack .../65-pkgconf-bin_1.8.1-4_ppc64el.deb ...
747s Unpacking pkgconf-bin (1.8.1-4) ...
747s Selecting previously unselected package pkgconf:ppc64el.
747s Preparing to unpack .../66-pkgconf_1.8.1-4_ppc64el.deb ...
747s Unpacking pkgconf:ppc64el (1.8.1-4) ...
747s Selecting previously unselected package libnghttp2-dev:ppc64el.
747s Preparing to unpack .../67-libnghttp2-dev_1.64.0-1_ppc64el.deb ...
747s Unpacking libnghttp2-dev:ppc64el (1.64.0-1) ...
747s Selecting previously unselected package libpsl-dev:ppc64el.
747s Preparing to unpack .../68-libpsl-dev_0.21.2-1.1build1_ppc64el.deb ...
747s Unpacking libpsl-dev:ppc64el (0.21.2-1.1build1) ...
747s Selecting previously unselected package zlib1g-dev:ppc64el.
747s Preparing to unpack .../69-zlib1g-dev_1%3a1.3.dfsg+really1.3.1-1ubuntu1_ppc64el.deb ...
747s Unpacking zlib1g-dev:ppc64el (1:1.3.dfsg+really1.3.1-1ubuntu1) ...
747s Selecting previously unselected package librtmp-dev:ppc64el.
747s Preparing to unpack .../70-librtmp-dev_2.4+20151223.gitfa8646d.1-2build7_ppc64el.deb ...
747s Unpacking librtmp-dev:ppc64el (2.4+20151223.gitfa8646d.1-2build7) ...
747s Selecting previously unselected package libssl-dev:ppc64el.
747s Preparing to unpack .../71-libssl-dev_3.4.0-1ubuntu1_ppc64el.deb ...
747s Unpacking libssl-dev:ppc64el (3.4.0-1ubuntu1) ...
747s Selecting previously unselected package libssh2-1-dev:ppc64el.
747s Preparing to unpack .../72-libssh2-1-dev_1.11.1-1_ppc64el.deb ...
747s Unpacking libssh2-1-dev:ppc64el (1.11.1-1) ...
747s Selecting previously unselected package libzstd-dev:ppc64el.
747s Preparing to unpack .../73-libzstd-dev_1.5.6+dfsg-1_ppc64el.deb ...
747s Unpacking libzstd-dev:ppc64el (1.5.6+dfsg-1) ...
747s Selecting previously unselected package libcurl4-gnutls-dev:ppc64el.
747s Preparing to unpack .../74-libcurl4-gnutls-dev_8.11.0-1ubuntu2_ppc64el.deb ...
747s Unpacking libcurl4-gnutls-dev:ppc64el (8.11.0-1ubuntu2) ...
747s Selecting previously unselected package libdeflate0:ppc64el.
747s Preparing to unpack .../75-libdeflate0_1.22-1_ppc64el.deb ...
747s Unpacking libdeflate0:ppc64el (1.22-1) ...
747s Selecting previously unselected package libdeflate-dev:ppc64el.
747s Preparing to unpack .../76-libdeflate-dev_1.22-1_ppc64el.deb ...
747s Unpacking libdeflate-dev:ppc64el (1.22-1) ...
747s Selecting previously unselected package libhtscodecs2:ppc64el.
747s Preparing to unpack .../77-libhtscodecs2_1.6.1-1_ppc64el.deb ...
747s Unpacking libhtscodecs2:ppc64el (1.6.1-1) ...
747s Selecting previously unselected package libhts3t64:ppc64el.
747s Preparing to unpack .../78-libhts3t64_1.20+ds-2_ppc64el.deb ...
747s Unpacking libhts3t64:ppc64el (1.20+ds-2) ...
747s Selecting previously unselected package liblzma-dev:ppc64el.
747s Preparing to unpack .../79-liblzma-dev_5.6.3-1_ppc64el.deb ...
747s Unpacking liblzma-dev:ppc64el (5.6.3-1) ...
747s Selecting previously unselected package libhts-dev:ppc64el.
747s Preparing to unpack .../80-libhts-dev_1.20+ds-2_ppc64el.deb ...
747s Unpacking libhts-dev:ppc64el (1.20+ds-2) ...
747s Selecting previously unselected package libhtscodecs-dev:ppc64el.
747s Preparing to unpack .../81-libhtscodecs-dev_1.6.1-1_ppc64el.deb ...
747s Unpacking libhtscodecs-dev:ppc64el (1.6.1-1) ...
747s Selecting previously unselected package tabix.
747s Preparing to unpack .../82-tabix_1.20+ds-2_ppc64el.deb ...
747s Unpacking tabix (1.20+ds-2) ...
747s Setting up libhtscodecs2:ppc64el (1.6.1-1) ...
747s Setting up libgnutls-openssl27t64:ppc64el (3.8.8-2ubuntu1) ...
747s Setting up libzstd-dev:ppc64el (1.5.6+dfsg-1) ...
747s Setting up libarchive-zip-perl (1.68-1) ...
747s Setting up htslib-test (1.20+ds-2) ...
747s Setting up libdebhelper-perl (13.20ubuntu1) ...
747s Setting up libdeflate0:ppc64el (1.22-1) ...
747s Setting up m4 (1.4.19-4build1) ...
747s Setting up libevent-2.1-7t64:ppc64el (2.1.12-stable-10) ...
747s Setting up libgomp1:ppc64el (14.2.0-8ubuntu1) ...
747s Setting up libpsl-dev:ppc64el (0.21.2-1.1build1) ...
747s Setting up libhtscodecs-dev:ppc64el (1.6.1-1) ...
747s Setting up autotools-dev (20220109.1) ...
747s Setting up libunbound8:ppc64el (1.20.0-1ubuntu2.1) ...
747s Setting up libpkgconf3:ppc64el (1.8.1-4) ...
747s Setting up libgmpxx4ldbl:ppc64el (2:6.3.0+dfsg-2ubuntu7) ...
747s Setting up libgnutls-dane0t64:ppc64el (3.8.8-2ubuntu1) ...
747s Setting up libgssrpc4t64:ppc64el (1.21.3-3) ...
747s Setting up libldap-dev:ppc64el (2.6.8+dfsg-1~exp4ubuntu3) ...
747s Setting up libquadmath0:ppc64el (14.2.0-8ubuntu1) ...
747s Setting up comerr-dev:ppc64el (2.1-1.47.1-1ubuntu1) ...
747s Setting up libssl-dev:ppc64el (3.4.0-1ubuntu1) ...
747s Setting up libmpc3:ppc64el (1.3.1-1build2) ...
747s Setting up autopoint (0.22.5-2) ...
747s Setting up pkgconf-bin (1.8.1-4) ...
747s Setting up libidn2-dev:ppc64el (2.3.7-2build2) ...
747s Setting up autoconf (2.72-3) ...
747s Setting up liblzma-dev:ppc64el (5.6.3-1) ...
747s Setting up libubsan1:ppc64el (14.2.0-8ubuntu1) ...
747s Setting up zlib1g-dev:ppc64el (1:1.3.dfsg+really1.3.1-1ubuntu1) ...
747s Setting up dwz (0.15-1build6) ...
747s Setting up libasan8:ppc64el (14.2.0-8ubuntu1) ...
747s Setting up debugedit (1:5.1-1) ...
747s Setting up libhts3t64:ppc64el (1.20+ds-2) ...
747s Setting up libtsan2:ppc64el (14.2.0-8ubuntu1) ...
747s Setting up libisl23:ppc64el (0.27-1) ...
747s Setting up libtasn1-6-dev:ppc64el (4.19.0-3build1) ...
747s Setting up libdeflate-dev:ppc64el (1.22-1) ...
747s Setting up tabix (1.20+ds-2) ...
747s Setting up libcc1-0:ppc64el (14.2.0-8ubuntu1) ...
747s Setting up libbrotli-dev:ppc64el (1.1.0-2build3) ...
747s Setting up liblsan0:ppc64el (14.2.0-8ubuntu1) ...
747s Setting up libp11-kit-dev:ppc64el (0.25.5-2ubuntu1) ...
747s Setting up libitm1:ppc64el (14.2.0-8ubuntu1) ...
747s Setting up libkadm5clnt-mit12:ppc64el (1.21.3-3) ...
747s Setting up libbz2-dev:ppc64el (1.0.8-6) ...
747s Setting up automake (1:1.16.5-1.3ubuntu1) ...
747s update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode
747s Setting up libfile-stripnondeterminism-perl (1.14.0-1) ...
747s Setting up gettext (0.22.5-2) ...
747s Setting up libgmp-dev:ppc64el (2:6.3.0+dfsg-2ubuntu7) ...
747s Setting up nettle-dev:ppc64el (3.10-1) ...
747s Setting up libkdb5-10t64:ppc64el (1.21.3-3) ...
747s Setting up pkgconf:ppc64el (1.8.1-4) ...
747s Setting up intltool-debian (0.35.0+20060710.6) ...
747s Setting up cpp-14-powerpc64le-linux-gnu (14.2.0-8ubuntu1) ...
747s Setting up libssh2-1-dev:ppc64el (1.11.1-1) ...
747s Setting up cpp-14 (14.2.0-8ubuntu1) ...
747s Setting up dh-strip-nondeterminism (1.14.0-1) ...
747s Setting up libkadm5srv-mit12:ppc64el (1.21.3-3) ...
747s Setting up libgcc-14-dev:ppc64el (14.2.0-8ubuntu1) ...
747s Setting up libstdc++-14-dev:ppc64el (14.2.0-8ubuntu1) ...
747s Setting up cpp-powerpc64le-linux-gnu (4:14.1.0-2ubuntu1) ...
747s Setting up gcc-14-powerpc64le-linux-gnu (14.2.0-8ubuntu1) ...
747s Setting up krb5-multidev:ppc64el (1.21.3-3) ...
747s Setting up libgnutls28-dev:ppc64el (3.8.8-2ubuntu1) ...
747s Setting up libnghttp2-dev:ppc64el (1.64.0-1) ...
747s Setting up g++-14-powerpc64le-linux-gnu (14.2.0-8ubuntu1) ...
747s Setting up po-debconf (1.0.21+nmu1) ...
747s Setting up gcc-14 (14.2.0-8ubuntu1) ...
747s Setting up libkrb5-dev:ppc64el (1.21.3-3) ...
747s Setting up gcc-powerpc64le-linux-gnu (4:14.1.0-2ubuntu1) ...
747s Setting up librtmp-dev:ppc64el (2.4+20151223.gitfa8646d.1-2build7) ...
747s Setting up cpp (4:14.1.0-2ubuntu1) ...
747s Setting up g++-14 (14.2.0-8ubuntu1) ...
747s Setting up g++-powerpc64le-linux-gnu (4:14.1.0-2ubuntu1) ...
747s Setting up libtool (2.4.7-8) ...
747s Setting up libcurl4-gnutls-dev:ppc64el (8.11.0-1ubuntu2) ...
747s Setting up gcc (4:14.1.0-2ubuntu1) ...
747s Setting up dh-autoreconf (20) ...
747s Setting up g++ (4:14.1.0-2ubuntu1) ...
747s update-alternatives: using /usr/bin/g++ to provide /usr/bin/c++ (c++) in auto mode
747s Setting up build-essential (12.10ubuntu1) ...
747s Setting up libhts-dev:ppc64el (1.20+ds-2) ...
747s Setting up debhelper (13.20ubuntu1) ...
747s Processing triggers for install-info (7.1.1-1) ...
747s Processing triggers for libc-bin (2.40-1ubuntu3) ...
747s Processing triggers for man-db (2.13.0-1) ...
750s autopkgtest [21:31:34]: test run-unit-test: [-----------------------
750s + pkg=htslib
750s + '[' /tmp/autopkgtest.VLO3fa/autopkgtest_tmp = '' ']'
750s + cp -aL /usr/share/htslib-test/Makefile /usr/share/htslib-test/annot-tsv.c /usr/share/htslib-test/bcf_sr_sort.c /usr/share/htslib-test/bcf_sr_sort.h /usr/share/htslib-test/bgzf.c /usr/share/htslib-test/bgzip.c /usr/share/htslib-test/config.h /usr/share/htslib-test/config.mk /usr/share/htslib-test/config_vars.h /usr/share/htslib-test/cram /usr/share/htslib-test/errmod.c /usr/share/htslib-test/faidx.c /usr/share/htslib-test/fuzz_settings.h /usr/share/htslib-test/header.c /usr/share/htslib-test/header.h /usr/share/htslib-test/hfile.c /usr/share/htslib-test/hfile_gcs.c /usr/share/htslib-test/hfile_internal.h /usr/share/htslib-test/hfile_libcurl.c /usr/share/htslib-test/hfile_s3.c /usr/share/htslib-test/hfile_s3_write.c /usr/share/htslib-test/hts.c /usr/share/htslib-test/hts_expr.c /usr/share/htslib-test/hts_internal.h /usr/share/htslib-test/hts_os.c /usr/share/htslib-test/hts_time_funcs.h /usr/share/htslib-test/htscodecs.mk /usr/share/htslib-test/htscodecs_bundled.mk /usr/share/htslib-test/htscodecs_external.mk /usr/share/htslib-test/htsfile.c /usr/share/htslib-test/htslib.mk /usr/share/htslib-test/htslib_static.mk /usr/share/htslib-test/htslib_vars.mk /usr/share/htslib-test/kfunc.c /usr/share/htslib-test/kstring.c /usr/share/htslib-test/md5.c /usr/share/htslib-test/multipart.c /usr/share/htslib-test/os /usr/share/htslib-test/plugin.c /usr/share/htslib-test/probaln.c /usr/share/htslib-test/realn.c /usr/share/htslib-test/regidx.c /usr/share/htslib-test/region.c /usr/share/htslib-test/sam.c /usr/share/htslib-test/sam_internal.h /usr/share/htslib-test/sam_mods.c /usr/share/htslib-test/synced_bcf_reader.c /usr/share/htslib-test/tabix.c /usr/share/htslib-test/tbx.c /usr/share/htslib-test/test /usr/share/htslib-test/textutils.c /usr/share/htslib-test/textutils_internal.h /usr/share/htslib-test/thread_pool.c /usr/share/htslib-test/thread_pool_internal.h /usr/share/htslib-test/vcf.c /usr/share/htslib-test/vcf_sweep.c /usr/share/htslib-test/vcfutils.c /usr/share/htslib-test/version.h /usr/share/htslib-test/version.sh /tmp/autopkgtest.VLO3fa/autopkgtest_tmp
750s + cp -aL htslib.pc.in /tmp/autopkgtest.VLO3fa/autopkgtest_tmp
750s + cp -aL htslib.map /tmp/autopkgtest.VLO3fa/autopkgtest_tmp
750s + cd /tmp/autopkgtest.VLO3fa/autopkgtest_tmp
750s + sed -i 's#\$(HTSPREFIX)#/usr/include/#g' htslib_vars.mk
750s + sed -i 's#\$(HTSLIB)#/usr/include/#g' htslib.mk
750s + CFLAGS='-O2 -fno-strict-aliasing -fno-code-hoisting'
750s + grep sse /proc/cpuinfo
750s + export CFLAGS
750s + make -e check
750s gcc -O2 -fno-strict-aliasing -fno-code-hoisting  -I. -Wdate-time -D_FORTIFY_SOURCE=3 -c -o kfunc.o kfunc.c
750s gcc -O2 -fno-strict-aliasing -fno-code-hoisting  -I. -Wdate-time -D_FORTIFY_SOURCE=3 -c -o kstring.o kstring.c
751s gcc -O2 -fno-strict-aliasing -fno-code-hoisting  -I. -Wdate-time -D_FORTIFY_SOURCE=3 -c -o bcf_sr_sort.o bcf_sr_sort.c
751s gcc -O2 -fno-strict-aliasing -fno-code-hoisting  -I. -Wdate-time -D_FORTIFY_SOURCE=3 -c -o bgzf.o bgzf.c
752s gcc -O2 -fno-strict-aliasing -fno-code-hoisting  -I. -Wdate-time -D_FORTIFY_SOURCE=3 -c -o errmod.o errmod.c
752s gcc -O2 -fno-strict-aliasing -fno-code-hoisting  -I. -Wdate-time -D_FORTIFY_SOURCE=3 -c -o faidx.o faidx.c
753s gcc -O2 -fno-strict-aliasing -fno-code-hoisting  -I. -Wdate-time -D_FORTIFY_SOURCE=3 -c -o header.o header.c
754s gcc -O2 -fno-strict-aliasing -fno-code-hoisting  -I. -Wdate-time -D_FORTIFY_SOURCE=3 -c -o hfile.o hfile.c
755s gcc -O2 -fno-strict-aliasing -fno-code-hoisting  -I. -Wdate-time -D_FORTIFY_SOURCE=3 -c -o hts.o hts.c
757s gcc -O2 -fno-strict-aliasing -fno-code-hoisting  -I. -Wdate-time -D_FORTIFY_SOURCE=3 -c -o hts_expr.o hts_expr.c
758s gcc -O2 -fno-strict-aliasing -fno-code-hoisting  -I. -Wdate-time -D_FORTIFY_SOURCE=3 -c -o hts_os.o hts_os.c
758s gcc -O2 -fno-strict-aliasing -fno-code-hoisting  -I. -Wdate-time -D_FORTIFY_SOURCE=3 -c -o md5.o md5.c
758s gcc -O2 -fno-strict-aliasing -fno-code-hoisting  -I. -Wdate-time -D_FORTIFY_SOURCE=3 -c -o multipart.o multipart.c
758s gcc -O2 -fno-strict-aliasing -fno-code-hoisting  -I. -Wdate-time -D_FORTIFY_SOURCE=3 -c -o probaln.o probaln.c
758s gcc -O2 -fno-strict-aliasing -fno-code-hoisting  -I. -Wdate-time -D_FORTIFY_SOURCE=3 -c -o realn.o realn.c
759s gcc -O2 -fno-strict-aliasing -fno-code-hoisting  -I. -Wdate-time -D_FORTIFY_SOURCE=3 -c -o regidx.o regidx.c
759s gcc -O2 -fno-strict-aliasing -fno-code-hoisting  -I. -Wdate-time -D_FORTIFY_SOURCE=3 -c -o region.o region.c
759s gcc -O2 -fno-strict-aliasing -fno-code-hoisting  -I. -Wdate-time -D_FORTIFY_SOURCE=3 -c -o sam.o sam.c
763s gcc -O2 -fno-strict-aliasing -fno-code-hoisting  -I. -Wdate-time -D_FORTIFY_SOURCE=3 -c -o sam_mods.o sam_mods.c
763s gcc -O2 -fno-strict-aliasing -fno-code-hoisting  -I. -Wdate-time -D_FORTIFY_SOURCE=3 -c -o synced_bcf_reader.o synced_bcf_reader.c
764s gcc -O2 -fno-strict-aliasing -fno-code-hoisting  -I. -Wdate-time -D_FORTIFY_SOURCE=3 -c -o vcf_sweep.o vcf_sweep.c
764s gcc -O2 -fno-strict-aliasing -fno-code-hoisting  -I. -Wdate-time -D_FORTIFY_SOURCE=3 -c -o tbx.o tbx.c
764s gcc -O2 -fno-strict-aliasing -fno-code-hoisting  -I. -Wdate-time -D_FORTIFY_SOURCE=3 -c -o textutils.o textutils.c
764s gcc -O2 -fno-strict-aliasing -fno-code-hoisting  -I. -Wdate-time -D_FORTIFY_SOURCE=3 -c -o thread_pool.o thread_pool.c
765s gcc -O2 -fno-strict-aliasing -fno-code-hoisting  -I. -Wdate-time -D_FORTIFY_SOURCE=3 -c -o vcf.o vcf.c
769s gcc -O2 -fno-strict-aliasing -fno-code-hoisting  -I. -Wdate-time -D_FORTIFY_SOURCE=3 -c -o vcfutils.o vcfutils.c
770s gcc -O2 -fno-strict-aliasing -fno-code-hoisting  -I. -Wdate-time -D_FORTIFY_SOURCE=3 -c -o cram/cram_codecs.o cram/cram_codecs.c
772s gcc -O2 -fno-strict-aliasing -fno-code-hoisting  -I. -Wdate-time -D_FORTIFY_SOURCE=3 -c -o cram/cram_decode.o cram/cram_decode.c
774s gcc -O2 -fno-strict-aliasing -fno-code-hoisting  -I. -Wdate-time -D_FORTIFY_SOURCE=3 -c -o cram/cram_encode.o cram/cram_encode.c
776s gcc -O2 -fno-strict-aliasing -fno-code-hoisting  -I. -Wdate-time -D_FORTIFY_SOURCE=3 -c -o cram/cram_external.o cram/cram_external.c
776s gcc -O2 -fno-strict-aliasing -fno-code-hoisting  -I. -Wdate-time -D_FORTIFY_SOURCE=3 -c -o cram/cram_index.o cram/cram_index.c
776s gcc -O2 -fno-strict-aliasing -fno-code-hoisting  -I. -Wdate-time -D_FORTIFY_SOURCE=3 -c -o cram/cram_io.o cram/cram_io.c
778s gcc -O2 -fno-strict-aliasing -fno-code-hoisting  -I. -Wdate-time -D_FORTIFY_SOURCE=3 -c -o cram/cram_stats.o cram/cram_stats.c
779s gcc -O2 -fno-strict-aliasing -fno-code-hoisting  -I. -Wdate-time -D_FORTIFY_SOURCE=3 -c -o cram/mFILE.o cram/mFILE.c
779s gcc -O2 -fno-strict-aliasing -fno-code-hoisting  -I. -Wdate-time -D_FORTIFY_SOURCE=3 -c -o cram/open_trace_file.o cram/open_trace_file.c
779s gcc -O2 -fno-strict-aliasing -fno-code-hoisting  -I. -Wdate-time -D_FORTIFY_SOURCE=3 -c -o cram/pooled_alloc.o cram/pooled_alloc.c
779s gcc -O2 -fno-strict-aliasing -fno-code-hoisting  -I. -Wdate-time -D_FORTIFY_SOURCE=3 -c -o cram/string_alloc.o cram/string_alloc.c
779s gcc -O2 -fno-strict-aliasing -fno-code-hoisting  -I. -Wdate-time -D_FORTIFY_SOURCE=3 -DPLUGINPATH=\"/usr/local/lib/htslib:/usr/local/libexec/htslib:/usr/lib/x86_64-linux-gnu/htslib\" -c -o plugin.o plugin.c
779s ar -rc libhts.a kfunc.o kstring.o bcf_sr_sort.o bgzf.o errmod.o faidx.o header.o hfile.o hts.o hts_expr.o hts_os.o md5.o multipart.o probaln.o realn.o regidx.o region.o sam.o sam_mods.o synced_bcf_reader.o vcf_sweep.o tbx.o textutils.o thread_pool.o vcf.o vcfutils.o cram/cram_codecs.o cram/cram_decode.o cram/cram_encode.o cram/cram_external.o cram/cram_index.o cram/cram_io.o cram/cram_stats.o cram/mFILE.o cram/open_trace_file.o cram/pooled_alloc.o cram/string_alloc.o   plugin.o
779s ranlib libhts.a
779s gcc -O2 -fno-strict-aliasing -fno-code-hoisting  -I. -Wdate-time -D_FORTIFY_SOURCE=3 -fPIC -c -o kfunc.pico kfunc.c
779s gcc -O2 -fno-strict-aliasing -fno-code-hoisting  -I. -Wdate-time -D_FORTIFY_SOURCE=3 -fPIC -c -o kstring.pico kstring.c
780s gcc -O2 -fno-strict-aliasing -fno-code-hoisting  -I. -Wdate-time -D_FORTIFY_SOURCE=3 -fPIC -c -o bcf_sr_sort.pico bcf_sr_sort.c
780s gcc -O2 -fno-strict-aliasing -fno-code-hoisting  -I. -Wdate-time -D_FORTIFY_SOURCE=3 -fPIC -c -o bgzf.pico bgzf.c
781s gcc -O2 -fno-strict-aliasing -fno-code-hoisting  -I. -Wdate-time -D_FORTIFY_SOURCE=3 -fPIC -c -o errmod.pico errmod.c
781s gcc -O2 -fno-strict-aliasing -fno-code-hoisting  -I. -Wdate-time -D_FORTIFY_SOURCE=3 -fPIC -c -o faidx.pico faidx.c
782s gcc -O2 -fno-strict-aliasing -fno-code-hoisting  -I. -Wdate-time -D_FORTIFY_SOURCE=3 -fPIC -c -o header.pico header.c
783s gcc -O2 -fno-strict-aliasing -fno-code-hoisting  -I. -Wdate-time -D_FORTIFY_SOURCE=3 -fPIC -c -o hfile.pico hfile.c
784s gcc -O2 -fno-strict-aliasing -fno-code-hoisting  -I. -Wdate-time -D_FORTIFY_SOURCE=3 -fPIC -c -o hts.pico hts.c
786s gcc -O2 -fno-strict-aliasing -fno-code-hoisting  -I. -Wdate-time -D_FORTIFY_SOURCE=3 -fPIC -c -o hts_expr.pico hts_expr.c
787s gcc -O2 -fno-strict-aliasing -fno-code-hoisting  -I. -Wdate-time -D_FORTIFY_SOURCE=3 -fPIC -c -o hts_os.pico hts_os.c
787s gcc -O2 -fno-strict-aliasing -fno-code-hoisting  -I. -Wdate-time -D_FORTIFY_SOURCE=3 -fPIC -c -o md5.pico md5.c
787s gcc -O2 -fno-strict-aliasing -fno-code-hoisting  -I. -Wdate-time -D_FORTIFY_SOURCE=3 -fPIC -c -o multipart.pico multipart.c
787s gcc -O2 -fno-strict-aliasing -fno-code-hoisting  -I. -Wdate-time -D_FORTIFY_SOURCE=3 -fPIC -c -o probaln.pico probaln.c
787s gcc -O2 -fno-strict-aliasing -fno-code-hoisting  -I. -Wdate-time -D_FORTIFY_SOURCE=3 -fPIC -c -o realn.pico realn.c
788s gcc -O2 -fno-strict-aliasing -fno-code-hoisting  -I. -Wdate-time -D_FORTIFY_SOURCE=3 -fPIC -c -o regidx.pico regidx.c
788s gcc -O2 -fno-strict-aliasing -fno-code-hoisting  -I. -Wdate-time -D_FORTIFY_SOURCE=3 -fPIC -c -o region.pico region.c
788s gcc -O2 -fno-strict-aliasing -fno-code-hoisting  -I. -Wdate-time -D_FORTIFY_SOURCE=3 -fPIC -c -o sam.pico sam.c
792s gcc -O2 -fno-strict-aliasing -fno-code-hoisting  -I. -Wdate-time -D_FORTIFY_SOURCE=3 -fPIC -c -o sam_mods.pico sam_mods.c
792s gcc -O2 -fno-strict-aliasing -fno-code-hoisting  -I. -Wdate-time -D_FORTIFY_SOURCE=3 -fPIC -c -o synced_bcf_reader.pico synced_bcf_reader.c
793s gcc -O2 -fno-strict-aliasing -fno-code-hoisting  -I. -Wdate-time -D_FORTIFY_SOURCE=3 -fPIC -c -o vcf_sweep.pico vcf_sweep.c
793s gcc -O2 -fno-strict-aliasing -fno-code-hoisting  -I. -Wdate-time -D_FORTIFY_SOURCE=3 -fPIC -c -o tbx.pico tbx.c
793s gcc -O2 -fno-strict-aliasing -fno-code-hoisting  -I. -Wdate-time -D_FORTIFY_SOURCE=3 -fPIC -c -o textutils.pico textutils.c
793s gcc -O2 -fno-strict-aliasing -fno-code-hoisting  -I. -Wdate-time -D_FORTIFY_SOURCE=3 -fPIC -c -o thread_pool.pico thread_pool.c
794s gcc -O2 -fno-strict-aliasing -fno-code-hoisting  -I. -Wdate-time -D_FORTIFY_SOURCE=3 -fPIC -c -o vcf.pico vcf.c
798s gcc -O2 -fno-strict-aliasing -fno-code-hoisting  -I. -Wdate-time -D_FORTIFY_SOURCE=3 -fPIC -c -o vcfutils.pico vcfutils.c
799s gcc -O2 -fno-strict-aliasing -fno-code-hoisting  -I. -Wdate-time -D_FORTIFY_SOURCE=3 -fPIC -c -o cram/cram_codecs.pico cram/cram_codecs.c
800s gcc -O2 -fno-strict-aliasing -fno-code-hoisting  -I. -Wdate-time -D_FORTIFY_SOURCE=3 -fPIC -c -o cram/cram_decode.pico cram/cram_decode.c
802s gcc -O2 -fno-strict-aliasing -fno-code-hoisting  -I. -Wdate-time -D_FORTIFY_SOURCE=3 -fPIC -c -o cram/cram_encode.pico cram/cram_encode.c
804s gcc -O2 -fno-strict-aliasing -fno-code-hoisting  -I. -Wdate-time -D_FORTIFY_SOURCE=3 -fPIC -c -o cram/cram_external.pico cram/cram_external.c
804s gcc -O2 -fno-strict-aliasing -fno-code-hoisting  -I. -Wdate-time -D_FORTIFY_SOURCE=3 -fPIC -c -o cram/cram_index.pico cram/cram_index.c
805s gcc -O2 -fno-strict-aliasing -fno-code-hoisting  -I. -Wdate-time -D_FORTIFY_SOURCE=3 -fPIC -c -o cram/cram_io.pico cram/cram_io.c
807s gcc -O2 -fno-strict-aliasing -fno-code-hoisting  -I. -Wdate-time -D_FORTIFY_SOURCE=3 -fPIC -c -o cram/cram_stats.pico cram/cram_stats.c
807s gcc -O2 -fno-strict-aliasing -fno-code-hoisting  -I. -Wdate-time -D_FORTIFY_SOURCE=3 -fPIC -c -o cram/mFILE.pico cram/mFILE.c
807s gcc -O2 -fno-strict-aliasing -fno-code-hoisting  -I. -Wdate-time -D_FORTIFY_SOURCE=3 -fPIC -c -o cram/open_trace_file.pico cram/open_trace_file.c
807s gcc -O2 -fno-strict-aliasing -fno-code-hoisting  -I. -Wdate-time -D_FORTIFY_SOURCE=3 -fPIC -c -o cram/pooled_alloc.pico cram/pooled_alloc.c
807s gcc -O2 -fno-strict-aliasing -fno-code-hoisting  -I. -Wdate-time -D_FORTIFY_SOURCE=3 -fPIC -c -o cram/string_alloc.pico cram/string_alloc.c
807s gcc -O2 -fno-strict-aliasing -fno-code-hoisting  -I. -Wdate-time -D_FORTIFY_SOURCE=3 -DPLUGINPATH=\"/usr/local/lib/htslib:/usr/local/libexec/htslib:/usr/lib/x86_64-linux-gnu/htslib\" -fPIC -c -o plugin.pico plugin.c
807s gcc -shared -Wl,-soname,libhts.so.3 -Wl,-version-script,htslib.map -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -Wl,-flto -fvisibility=hidden -ffat-lto-objects -fvisibility=hidden -rdynamic -o libhts.so kfunc.pico kstring.pico bcf_sr_sort.pico bgzf.pico errmod.pico faidx.pico header.pico hfile.pico hts.pico hts_expr.pico hts_os.pico md5.pico multipart.pico probaln.pico realn.pico regidx.pico region.pico sam.pico sam_mods.pico synced_bcf_reader.pico vcf_sweep.pico tbx.pico textutils.pico thread_pool.pico vcf.pico vcfutils.pico cram/cram_codecs.pico cram/cram_decode.pico cram/cram_encode.pico cram/cram_external.pico cram/cram_index.pico cram/cram_io.pico cram/cram_stats.pico cram/mFILE.pico cram/open_trace_file.pico cram/pooled_alloc.pico cram/string_alloc.pico plugin.pico -ldeflate -lhtscodecs -llzma -lbz2 -lz -lm  -lpthread
808s ln -sf libhts.so libhts.so.3
808s gcc -O2 -fno-strict-aliasing -fno-code-hoisting  -I. -Wdate-time -D_FORTIFY_SOURCE=3 -c -o annot-tsv.o annot-tsv.c
808s gcc -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -Wl,-flto -fvisibility=hidden -ffat-lto-objects -fvisibility=hidden -rdynamic -o annot-tsv annot-tsv.o libhts.a -ldeflate -lhtscodecs -llzma -lbz2 -lz -lm  -lpthread
808s gcc -O2 -fno-strict-aliasing -fno-code-hoisting  -I. -Wdate-time -D_FORTIFY_SOURCE=3 -c -o bgzip.o bgzip.c
809s gcc -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -Wl,-flto -fvisibility=hidden -ffat-lto-objects -fvisibility=hidden -rdynamic -o bgzip bgzip.o libhts.a -ldeflate -lhtscodecs -llzma -lbz2 -lz -lm  libhts.a -lpthread
809s gcc -O2 -fno-strict-aliasing -fno-code-hoisting  -I. -Wdate-time -D_FORTIFY_SOURCE=3 -c -o htsfile.o htsfile.c
809s gcc -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -Wl,-flto -fvisibility=hidden -ffat-lto-objects -fvisibility=hidden -rdynamic -o htsfile htsfile.o libhts.a -ldeflate -lhtscodecs -llzma -lbz2 -lz -lm  libhts.a -lpthread
809s gcc -O2 -fno-strict-aliasing -fno-code-hoisting  -I. -Wdate-time -D_FORTIFY_SOURCE=3 -c -o tabix.o tabix.c
809s gcc -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -Wl,-flto -fvisibility=hidden -ffat-lto-objects -fvisibility=hidden -rdynamic -o tabix tabix.o libhts.a -ldeflate -lhtscodecs -llzma -lbz2 -lz -lm  libhts.a -lpthread
809s gcc -O2 -fno-strict-aliasing -fno-code-hoisting  -I. -Wdate-time -D_FORTIFY_SOURCE=3 -fPIC -c -o hfile_libcurl.pico hfile_libcurl.c
810s gcc -shared -Wl,-E -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -Wl,-flto -fvisibility=hidden -ffat-lto-objects -fvisibility=hidden -rdynamic -o hfile_libcurl.so hfile_libcurl.pico libhts.so -ldeflate -lhtscodecs -llzma -lbz2 -lz -lm  -lcurl -lpthread
810s gcc -O2 -fno-strict-aliasing -fno-code-hoisting  -I. -Wdate-time -D_FORTIFY_SOURCE=3 -fPIC -c -o hfile_gcs.pico hfile_gcs.c
810s gcc -shared -Wl,-E -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -Wl,-flto -fvisibility=hidden -ffat-lto-objects -fvisibility=hidden -rdynamic -o hfile_gcs.so hfile_gcs.pico libhts.so -ldeflate -lhtscodecs -llzma -lbz2 -lz -lm  -lpthread
810s gcc -O2 -fno-strict-aliasing -fno-code-hoisting  -I. -Wdate-time -D_FORTIFY_SOURCE=3 -fPIC -c -o hfile_s3.pico hfile_s3.c
811s gcc -shared -Wl,-E -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -Wl,-flto -fvisibility=hidden -ffat-lto-objects -fvisibility=hidden -rdynamic -o hfile_s3.so hfile_s3.pico libhts.so -ldeflate -lhtscodecs -llzma -lbz2 -lz -lm  -lcrypto -lpthread
811s gcc -O2 -fno-strict-aliasing -fno-code-hoisting  -I. -Wdate-time -D_FORTIFY_SOURCE=3 -fPIC -c -o hfile_s3_write.pico hfile_s3_write.c
811s gcc -shared -Wl,-E -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -Wl,-flto -fvisibility=hidden -ffat-lto-objects -fvisibility=hidden -rdynamic -o hfile_s3_write.so hfile_s3_write.pico libhts.so -ldeflate -lhtscodecs -llzma -lbz2 -lz -lm  -lcrypto -lcurl -lpthread
811s gcc -O2 -fno-strict-aliasing -fno-code-hoisting  -I. -Wdate-time -D_FORTIFY_SOURCE=3 -c -o test/hts_endian.o test/hts_endian.c
812s gcc -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -Wl,-flto -fvisibility=hidden -ffat-lto-objects -fvisibility=hidden -rdynamic -o test/hts_endian test/hts_endian.o -ldeflate -lhtscodecs -llzma -lbz2 -lz -lm 
812s gcc -O2 -fno-strict-aliasing -fno-code-hoisting  -I. -Wdate-time -D_FORTIFY_SOURCE=3 -c -o test/fieldarith.o test/fieldarith.c
812s gcc -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -Wl,-flto -fvisibility=hidden -ffat-lto-objects -fvisibility=hidden -rdynamic -o test/fieldarith test/fieldarith.o libhts.a -ldeflate -lhtscodecs -llzma -lbz2 -lz -lm  -lpthread
812s gcc -O2 -fno-strict-aliasing -fno-code-hoisting  -I. -Wdate-time -D_FORTIFY_SOURCE=3 -c -o test/hfile.o test/hfile.c
812s gcc -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -Wl,-flto -fvisibility=hidden -ffat-lto-objects -fvisibility=hidden -rdynamic -o test/hfile test/hfile.o libhts.a -ldeflate -lhtscodecs -llzma -lbz2 -lz -lm  -lpthread
812s gcc -O2 -fno-strict-aliasing -fno-code-hoisting  -I. -Wdate-time -D_FORTIFY_SOURCE=3 -c -o test/pileup.o test/pileup.c
812s gcc -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -Wl,-flto -fvisibility=hidden -ffat-lto-objects -fvisibility=hidden -rdynamic -o test/pileup test/pileup.o libhts.a -ldeflate -lhtscodecs -llzma -lbz2 -lz -lm  -lpthread
812s gcc -O2 -fno-strict-aliasing -fno-code-hoisting  -I. -Wdate-time -D_FORTIFY_SOURCE=3 -c -o test/pileup_mod.o test/pileup_mod.c
812s gcc -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -Wl,-flto -fvisibility=hidden -ffat-lto-objects -fvisibility=hidden -rdynamic -o test/pileup_mod test/pileup_mod.o libhts.a -ldeflate -lhtscodecs -llzma -lbz2 -lz -lm  -lpthread
812s gcc -O2 -fno-strict-aliasing -fno-code-hoisting  -I. -Wdate-time -D_FORTIFY_SOURCE=3 -c -o test/plugins-dlhts.o test/plugins-dlhts.c
812s gcc -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -Wl,-flto -fvisibility=hidden -ffat-lto-objects -fvisibility=hidden -rdynamic -o test/plugins-dlhts test/plugins-dlhts.o -ldeflate -lhtscodecs -llzma -lbz2 -lz -lm 
813s gcc -O2 -fno-strict-aliasing -fno-code-hoisting  -I. -Wdate-time -D_FORTIFY_SOURCE=3 -c -o test/sam.o test/sam.c
813s gcc -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -Wl,-flto -fvisibility=hidden -ffat-lto-objects -fvisibility=hidden -rdynamic -o test/sam test/sam.o libhts.a -ldeflate -lhtscodecs -llzma -lbz2 -lz -lm  -lpthread
813s gcc -O2 -fno-strict-aliasing -fno-code-hoisting  -I. -Wdate-time -D_FORTIFY_SOURCE=3 -c -o test/test_bgzf.o test/test_bgzf.c
814s gcc -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -Wl,-flto -fvisibility=hidden -ffat-lto-objects -fvisibility=hidden -rdynamic -o test/test_bgzf test/test_bgzf.o libhts.a -lz -ldeflate -lhtscodecs -llzma -lbz2 -lz -lm  -lpthread
814s gcc -O2 -fno-strict-aliasing -fno-code-hoisting  -I. -Wdate-time -D_FORTIFY_SOURCE=3 -c -o test/test_expr.o test/test_expr.c
814s gcc -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -Wl,-flto -fvisibility=hidden -ffat-lto-objects -fvisibility=hidden -rdynamic -o test/test_expr test/test_expr.o libhts.a -lz -ldeflate -lhtscodecs -llzma -lbz2 -lz -lm  -lpthread
814s gcc -O2 -fno-strict-aliasing -fno-code-hoisting  -I. -Wdate-time -D_FORTIFY_SOURCE=3 -c -o test/test_faidx.o test/test_faidx.c
814s gcc -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -Wl,-flto -fvisibility=hidden -ffat-lto-objects -fvisibility=hidden -rdynamic -o test/test_faidx test/test_faidx.o libhts.a -lz -ldeflate -lhtscodecs -llzma -lbz2 -lz -lm  -lpthread
814s gcc -O2 -fno-strict-aliasing -fno-code-hoisting  -I. -Wdate-time -D_FORTIFY_SOURCE=3 -c -o test/test_kfunc.o test/test_kfunc.c
814s gcc -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -Wl,-flto -fvisibility=hidden -ffat-lto-objects -fvisibility=hidden -rdynamic -o test/test_kfunc test/test_kfunc.o libhts.a -lz -ldeflate -lhtscodecs -llzma -lbz2 -lz -lm  -lpthread
814s gcc -O2 -fno-strict-aliasing -fno-code-hoisting  -I. -Wdate-time -D_FORTIFY_SOURCE=3 -c -o test/test_kstring.o test/test_kstring.c
815s gcc -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -Wl,-flto -fvisibility=hidden -ffat-lto-objects -fvisibility=hidden -rdynamic -o test/test_kstring test/test_kstring.o libhts.a -lz -ldeflate -lhtscodecs -llzma -lbz2 -lz -lm  -lpthread
815s gcc -O2 -fno-strict-aliasing -fno-code-hoisting  -I. -Wdate-time -D_FORTIFY_SOURCE=3 -c -o test/test_mod.o test/test_mod.c
815s gcc -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -Wl,-flto -fvisibility=hidden -ffat-lto-objects -fvisibility=hidden -rdynamic -o test/test_mod test/test_mod.o libhts.a -ldeflate -lhtscodecs -llzma -lbz2 -lz -lm  -lpthread
815s gcc -O2 -fno-strict-aliasing -fno-code-hoisting  -I. -Wdate-time -D_FORTIFY_SOURCE=3 -c -o test/test_realn.o test/test_realn.c
815s gcc -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -Wl,-flto -fvisibility=hidden -ffat-lto-objects -fvisibility=hidden -rdynamic -o test/test_realn test/test_realn.o libhts.a -ldeflate -lhtscodecs -llzma -lbz2 -lz -lm  -lpthread
815s gcc -O2 -fno-strict-aliasing -fno-code-hoisting  -I. -Wdate-time -D_FORTIFY_SOURCE=3 -c -o test/test-regidx.o test/test-regidx.c
815s gcc -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -Wl,-flto -fvisibility=hidden -ffat-lto-objects -fvisibility=hidden -rdynamic -o test/test-regidx test/test-regidx.o libhts.a -ldeflate -lhtscodecs -llzma -lbz2 -lz -lm  -lpthread
815s gcc -O2 -fno-strict-aliasing -fno-code-hoisting  -I. -Wdate-time -D_FORTIFY_SOURCE=3 -c -o test/test_str2int.o test/test_str2int.c
816s gcc -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -Wl,-flto -fvisibility=hidden -ffat-lto-objects -fvisibility=hidden -rdynamic -o test/test_str2int test/test_str2int.o libhts.a -ldeflate -lhtscodecs -llzma -lbz2 -lz -lm  -lpthread
816s gcc -O2 -fno-strict-aliasing -fno-code-hoisting  -I. -Wdate-time -D_FORTIFY_SOURCE=3 -c -o test/test_time_funcs.o test/test_time_funcs.c
816s gcc -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -Wl,-flto -fvisibility=hidden -ffat-lto-objects -fvisibility=hidden -rdynamic -o test/test_time_funcs test/test_time_funcs.o
816s gcc -O2 -fno-strict-aliasing -fno-code-hoisting  -I. -Wdate-time -D_FORTIFY_SOURCE=3 -c -o test/test_view.o test/test_view.c
816s gcc -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -Wl,-flto -fvisibility=hidden -ffat-lto-objects -fvisibility=hidden -rdynamic -o test/test_view test/test_view.o libhts.a -ldeflate -lhtscodecs -llzma -lbz2 -lz -lm  -lpthread
816s gcc -O2 -fno-strict-aliasing -fno-code-hoisting  -I. -Wdate-time -D_FORTIFY_SOURCE=3 -c -o test/test_index.o test/test_index.c
816s gcc -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -Wl,-flto -fvisibility=hidden -ffat-lto-objects -fvisibility=hidden -rdynamic -o test/test_index test/test_index.o libhts.a -ldeflate -lhtscodecs -llzma -lbz2 -lz -lm  -lpthread
816s gcc -O2 -fno-strict-aliasing -fno-code-hoisting  -I. -Wdate-time -D_FORTIFY_SOURCE=3 -c -o test/test-vcf-api.o test/test-vcf-api.c
816s gcc -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -Wl,-flto -fvisibility=hidden -ffat-lto-objects -fvisibility=hidden -rdynamic -o test/test-vcf-api test/test-vcf-api.o libhts.a -ldeflate -lhtscodecs -llzma -lbz2 -lz -lm  -lpthread
816s gcc -O2 -fno-strict-aliasing -fno-code-hoisting  -I. -Wdate-time -D_FORTIFY_SOURCE=3 -c -o test/test-vcf-sweep.o test/test-vcf-sweep.c
816s gcc -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -Wl,-flto -fvisibility=hidden -ffat-lto-objects -fvisibility=hidden -rdynamic -o test/test-vcf-sweep test/test-vcf-sweep.o libhts.a -ldeflate -lhtscodecs -llzma -lbz2 -lz -lm  -lpthread
817s gcc -O2 -fno-strict-aliasing -fno-code-hoisting  -I. -Wdate-time -D_FORTIFY_SOURCE=3 -c -o test/test-bcf-sr.o test/test-bcf-sr.c
817s gcc -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -Wl,-flto -fvisibility=hidden -ffat-lto-objects -fvisibility=hidden -rdynamic -o test/test-bcf-sr test/test-bcf-sr.o libhts.a -lz -ldeflate -lhtscodecs -llzma -lbz2 -lz -lm  -lpthread
817s gcc -O2 -fno-strict-aliasing -fno-code-hoisting  -I. -Wdate-time -D_FORTIFY_SOURCE=3 -c -o test/fuzz/hts_open_fuzzer.o test/fuzz/hts_open_fuzzer.c
817s gcc -O2 -fno-strict-aliasing -fno-code-hoisting  -I. -Wdate-time -D_FORTIFY_SOURCE=3 -c -o test/test-bcf-translate.o test/test-bcf-translate.c
817s gcc -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -Wl,-flto -fvisibility=hidden -ffat-lto-objects -fvisibility=hidden -rdynamic -o test/test-bcf-translate test/test-bcf-translate.o libhts.a -lz -ldeflate -lhtscodecs -llzma -lbz2 -lz -lm  -lpthread
817s gcc -O2 -fno-strict-aliasing -fno-code-hoisting  -I. -Wdate-time -D_FORTIFY_SOURCE=3 -c -o test/test-parse-reg.o test/test-parse-reg.c
817s gcc -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -Wl,-flto -fvisibility=hidden -ffat-lto-objects -fvisibility=hidden -rdynamic -o test/test-parse-reg test/test-parse-reg.o libhts.a -ldeflate -lhtscodecs -llzma -lbz2 -lz -lm  -lpthread
817s gcc -O2 -fno-strict-aliasing -fno-code-hoisting  -I. -Wdate-time -D_FORTIFY_SOURCE=3 -c -o test/test_introspection.o test/test_introspection.c
817s gcc -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -Wl,-flto -fvisibility=hidden -ffat-lto-objects -fvisibility=hidden -rdynamic -o test/test_introspection test/test_introspection.o libhts.a -ldeflate -lhtscodecs -llzma -lbz2 -lz -lm  -lpthread
817s gcc -O2 -fno-strict-aliasing -fno-code-hoisting  -I. -Wdate-time -D_FORTIFY_SOURCE=3 -c -o test/test-bcf_set_variant_type.o test/test-bcf_set_variant_type.c
822s gcc -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -Wl,-flto -fvisibility=hidden -ffat-lto-objects -fvisibility=hidden -rdynamic -o test/test-bcf_set_variant_type test/test-bcf_set_variant_type.o libhts.a -ldeflate -lhtscodecs -llzma -lbz2 -lz -lm  -lpthread
822s sed -e '/^static_libs=/s/@static_LIBS@/-lz -lm -lbz2 -llzma -lcurl/;s#@[^-][^@]*@##g' htslib.pc.in > htslib.pc.tmp
822s sed -n '/^static_libs=/s/[^=]*=/HTSLIB_static_LIBS = /p;/^static_ldflags=/s/[^=]*=/HTSLIB_static_LDFLAGS = /p' htslib.pc.tmp > htslib_static.mk
822s sed -e 's#@-includedir@#'`pwd`'#g;s#@-libdir@#'`pwd`'#g' htslib.pc.tmp > htslib-uninstalled.pc
822s test/hts_endian
822s test/test_expr
822s test/test_kfunc
822s test/test_kstring
822s test/test_str2int
822s test/test_time_funcs
823s test/fieldarith test/fieldarith.sam
823s test/hfile
823s if test "xhfile_libcurl.so hfile_gcs.so hfile_s3.so hfile_s3_write.so" != "x"; then \
823s     HTS_PATH=. test/with-shlib.sh test/plugins-dlhts -g ./libhts.so; \
823s fi
823s if test "xhfile_libcurl.so hfile_gcs.so hfile_s3.so hfile_s3_write.so" != "x"; then \
823s   HTS_PATH=. test/with-shlib.sh test/plugins-dlhts -l ./libhts.so; \
823s fi
823s test/test_bgzf test/bgziptest.txt
824s test/test-parse-reg -t test/colons.bam
824s Expected error: [E::hts_parse_region] Range is ambiguous. Use {chr1:100-200} or {chr1}:100-200 instead
824s Expected error: [E::hts_parse_region] Range is ambiguous. Use {chr1:100-200,chr3} or {chr1}:100-200,chr3 instead
824s Expected error: [E::hts_parse_region] Mismatching braces in "{chr1"
824s Expected error: [E::hts_parse_region] Unexpected string "x" after region
824s Expected error: [E::hts_parse_region] Unexpected string "y" after region
824s Expected error: [E::hts_parse_region] Unexpected string "chr3" after region
824s cd test/faidx && ./test-faidx.sh faidx.tst
824s Testing faidx...
824s PASS : $test_faidx -i faidx.fa -f faidx.fa.tmp.fai -e faidx.fa.expected.fai
824s PASS : $test_faidx -i faidx.fa -f faidx.fa.tmp.fai -t fai_line_length -e 24 trailingblank2
824s PASS : $test_faidx -i faidx.fa -f faidx.fa.tmp.fai -t faidx_has_seq -e 1 foo
824s PASS : $test_faidx -i faidx.fa -f faidx.fa.tmp.fai -t faidx_has_seq -e 0 absent
824s PASS : $test_faidx -i faidx.fa -f faidx.fa.tmp.fai -t faidx_iseq -e trailingblank3 3
824s PASS : $test_faidx -i faidx.fa -f faidx.fa.tmp.fai -t faidx_seq_len -e 33 trailingblank1
824s PASS : $test_faidx -i faidx.fa -f faidx.fa.tmp.fai -t faidx_seq_len64 -e 72 trailingblank2
824s PASS : $test_faidx -i fastqs.fq -f fastqs.fq.tmp.fai -e fastqs.fq.expected.fai
824s PASS : $test_faidx -i fastqs.fq -f fastqs.fq.tmp.fai -Q -t fai_line_length -e 63 FAKE0005_3
824s PASS : $test_faidx -i fastqs.fq -f fastqs.fq.tmp.fai -Q -t fai_line_length -e 144 SRR014849.203935_3
824s PASS : $test_faidx -i fastqs.fq -f fastqs.fq.tmp.fai -t faidx_has_seq -e 1 SRR014849.203935_3
824s PASS : $test_faidx -i fastqs.fq -f fastqs.fq.tmp.fai -t faidx_has_seq -e 0 absent
824s PASS : $test_faidx -i fastqs.fq -f fastqs.fq.tmp.fai -t faidx_iseq -e FAKE0005_1 0
824s PASS : $test_faidx -i fastqs.fq -f fastqs.fq.tmp.fai -t faidx_seq_len -e 453 FSRRS4401CM938_1
824s PASS : $test_faidx -i fastqs.fq -f fastqs.fq.tmp.fai -t faidx_seq_len64 -e 309 FSRRS4401AOV6A_4
824s PASS : $test_faidx -i faidx.fa -f faidx.fa.tmp.fai trailingblank2:28-33 trailingblank3:4-5 bar:4-5
824s PASS : $test_faidx -i faidx.fa -f faidx.fa.tmp.fai -t fai_fetch trailingblank2:28-33 trailingblank3:4-5 bar:4-5
824s PASS : $test_faidx -i faidx.fa -f faidx.fa.tmp.fai -t faidx_fetch_seq64 trailingblank2:28-33 trailingblank3:4-5 bar:4-5
824s PASS : $test_faidx -i faidx.fa -f faidx.fa.tmp.fai -t fai_adjust_region trailingblank2:28-33 trailingblank3:4-5 bar:4-5
824s PASS : $test_faidx -i fastqs.fq -f fastqs.fq.tmp.fai -Q FAKE0006_1:4-12 FSRRS4401BE7HA_1:81-120 FAKE0010_2 SRR014849.50939_3:71-90
824s PASS : $test_faidx -i fastqs.fq -f fastqs.fq.tmp.fai -Q -t fai_fetch FAKE0006_1:4-12 FSRRS4401BE7HA_1:81-120 FAKE0010_2 SRR014849.50939_3:71-90
824s PASS : $test_faidx -i fastqs.fq -f fastqs.fq.tmp.fai -Q -t faidx_fetch_seq64 FAKE0006_1:4-12 FSRRS4401BE7HA_1:81-120 FAKE0010_2 SRR014849.50939_3:71-90
824s PASS : $test_faidx -i fastqs.fq -f fastqs.fq.tmp.fai FAKE0006_1:4-12 FSRRS4401BE7HA_1:81-120 FAKE0010_2 SRR014849.50939_3:71-90
824s PASS : $test_faidx -i ce.fa.tmp.gz -f ce.fa.tmp.gz.fai -g ce.fa.tmp.gz.gzi -e ../ce.fa.fai
824s PASS : $test_faidx -i ce.fa.tmp.gz -f ce.fa.tmp.gz.fai -g ce.fa.tmp.gz.gzi CHROMOSOME_I:5001-5125 CHROMOSOME_X:101-225
824s 
824s Expected   passes:   25
824s Unexpected passes:   0
824s Expected   failures: 0
824s Unexpected failures: 0
824s cd test/sam_filter && ./filter.sh filter.tst
824s Testing sam_filter...
824s PASS : $tv -i 'filter=qname =~ "\.1" && cigar =~ "D"' ../ce#1000.sam
824s PASS : $tv -i 'filter=rname=="CHROMOSOME_II"' ../ce#5b.sam
824s PASS : $tv -i 'filter=rname=~"CHROMOSOME_II"' ../ce#5b.sam
824s PASS : $tv -i 'filter=cigar=~"D"' ../ce#1000.sam
824s PASS : $tv -i 'filter=seq =~ "(AT){2}"' ../ce#1000.sam
824s PASS : $tv -i 'filter=library=="x"' ../xx#rg.sam
824s PASS : $tv -i 'filter=library!="x"' ../xx#rg.sam
824s PASS : $tv -i 'filter=pos % 23 == 11' ../ce#1000.sam | grep -E -cv '^@'
824s PASS : $tv -i 'filter=qlen/(flag*mapq+pos)>5' ../ce#1000.sam | grep -E -cv '^@'
824s PASS : $tv -i 'filter=[NM]>=10 || [MD]=~"A.*A.*A"' -t4 ../ce#1000.sam | grep -E -cv '^@'
824s PASS : $tv -i 'filter=length(seq) != qlen' ../ce#5b.sam | grep -E -cv '^@'
824s PASS : $tv -i 'filter=min(qual) >= 20' ../ce#1000.sam | grep -E -cv '^@'
824s PASS : $tv -i 'filter=max(qual) <= 20' ../ce#1000.sam | grep -E -cv '^@'
824s PASS : $tv -i 'filter=avg(qual) >= 20 && avg(qual) <= 30' ../ce#1000.sam | grep -E -cv '^@'
824s PASS : $tv -i 'filter=sclen>=20' ../realn02.sam | grep -E -v '^@'
824s PASS : $tv -i 'filter=rlen<50' ../realn02.sam | grep -E -v '^@'
824s PASS : $tv -i 'filter=qlen>100' ../realn02.sam | grep -E -v '^@'
824s PASS : $tv -i 'filter=hclen>=4' ../c1#clip.sam | grep -E -v '^@'
824s 
824s Expected   passes:   18
824s Unexpected passes:   0
824s Expected   failures: 0
824s Unexpected failures: 0
824s cd test/tabix && ./test-tabix.sh tabix.tst
824s Testing tabix...
824s PASS : $tabix -f -p vcf vcf_file.tbi.tmp.vcf.gz
824s PASS : $tabix vcf_file.tbi.tmp.vcf.gz 1:3000151-3000151
824s PASS : $tabix vcf_file.tbi.tmp.vcf.gz 2:3199812-3199812
824s PASS : $tabix -f -C -p vcf vcf_file.csi.tmp.vcf.gz
824s PASS : $tabix vcf_file.csi.tmp.vcf.gz 1:3000151-3000151
824s PASS : $tabix vcf_file.csi.tmp.vcf.gz 2:3199812-3199812
824s PASS : $tabix -f -p vcf large_chr.tmp.vcf.gz (must exit non-zero)
824s PASS : $tabix -f -C -p vcf large_chr.tmp.vcf.gz
824s PASS : $tabix large_chr.tmp.vcf.gz chr20:1-2147483647
824s PASS : $tabix -f -p bed bed_file.tbi.tmp.bed.gz
824s PASS : $tabix bed_file.tbi.tmp.bed.gz Y:100200-100200
824s PASS : $tabix -f -p gff gff_file.tbi.tmp.gff.gz
824s PASS : $tabix gff_file.tbi.tmp.gff.gz X:2934832-2935190
824s PASS : $tabix --separate-regions bed_file.tbi.tmp.bed.gz X:1100-1400 Y:100000-100550 Z:100000-100005
824s PASS : $tabix -f -p bed bed_file.tbi.tmp.bed.gz -@ 2
824s PASS : $tabix vcf_file.tbi.tmp.vcf.gz 1:3000151-3000151 --threads 2
824s 
824s Expected   passes:   16
824s Unexpected passes:   0
824s Expected   failures: 0
824s Unexpected failures: 0
824s cd test/mpileup && ./test-pileup.sh mpileup.tst
824s Testing (m)pileup...
824s PASS : $pileup mp_D.sam
824s PASS : $pileup -m mp_D.sam
824s PASS : $pileup mp_DI.sam
824s PASS : $pileup -m mp_DI.sam
824s PASS : $pileup mp_I.sam
824s PASS : $pileup -m mp_I.sam
824s PASS : $pileup mp_P.sam
824s PASS : $pileup -m mp_P.sam
824s PASS : $pileup mp_ID.sam
824s PASS : $pileup -m mp_ID.sam
824s PASS : $pileup mp_N.sam
824s PASS : $pileup -m mp_N.sam
824s PASS : $pileup mp_N2.sam
824s PASS : $pileup -m mp_N2.sam
824s PASS : $pileup c1#pad1.sam
824s PASS : $pileup -m c1#pad1.sam
824s PASS : $pileup c1#pad2.sam
824s PASS : $pileup -m c1#pad2.sam
824s PASS : $pileup c1#pad3.sam
824s PASS : $pileup -m c1#pad3.sam
824s PASS : $pileup -m small.bam
824s PASS : $pileup -m mp_overlap1.sam
824s PASS : $pileup -m mp_overlap2.sam
824s 
824s Expected   passes:   23
824s Unexpected passes:   0
824s Expected   failures: 0
824s Unexpected failures: 0
824s cd test/fastq && ./test-fastq.sh
824s Testing fastq support
824s PASS : $tview minimal.fq
824s PASS : $tview minimal.fa
824s PASS : $tview multiline.fq
824s PASS : $tview multiline.fa
824s PASS : $tview -i fastq_aux longline.fq
824s PASS : $tview single.fq
824s PASS : $tview single.fa
824s PASS : $tview -i fastq_aux single.fq
824s PASS : $tview -i fastq_aux single.fa
824s PASS : $tview interleaved.fq
824s PASS : $tview interleaved.fa
824s PASS : $tview -i fastq_aux interleaved.fq
824s PASS : $tview -i fastq_aux interleaved.fa
824s PASS : $tview -i fastq_casava interleaved_casava.fq
824s PASS : $tview -i fastq_barcode=OX -i fastq_casava interleaved_casava.fq
824s PASS : $tview -i fastq_casava interleaved_casava.fa
824s PASS : $tview -i fastq_barcode=OX -i fastq_casava interleaved_casava.fa
825s PASS : $tview -i fastq_casava filter_casava.fq
825s PASS : $tview -i fastq_casava filter_casava.fa
825s PASS : $tview -i fastq_aux r1.fq
825s PASS : $tview -i fastq_aux r2.fq
825s PASS : $tview -i fastq_aux r1.fa
825s PASS : $tview -i fastq_aux r2.fa
825s PASS : $tview -i fastq_name2 name2.fq
825s PASS : $tview -i fastq_name2 name2.fa
825s PASS : $tview -f minimal.sam
825s PASS : $tview -F minimal.sam
825s PASS : $tview -f -o fastq_aux single_aux.sam
825s PASS : $tview -F -o fastq_aux single_aux.sam
825s PASS : $tview -f -o fastq_aux -o fastq_rnum inter_aux.sam
825s PASS : $tview -F -o fastq_aux -o fastq_rnum inter_aux.sam
825s PASS : $tview -f -o fastq_casava inter_casava.sam
825s PASS : $tview -f -o fastq_barcode=OX -o fastq_casava inter_casavaOX.sam
825s PASS : $tview -F -o fastq_casava inter_casava.sam
825s PASS : $tview -F -o fastq_barcode=OX -o fastq_casava inter_casavaOX.sam
825s PASS : $tview -f -o fastq_casava filter_casava.sam
825s PASS : $tview -F -o fastq_casava filter_casava.sam
825s PASS : $tview -f -o fastq_aux -o fastq_rnum r1.sam
825s PASS : $tview -f -o fastq_aux -o fastq_rnum r2.sam
825s PASS : $tview -F -o fastq_aux -o fastq_rnum r1.sam
825s PASS : $tview -F -o fastq_aux -o fastq_rnum r2.sam
825s 
825s Expected   passes:   41
825s Unexpected passes:   0
825s Expected   failures: 0
825s Unexpected failures: 0
825s cd test/base_mods && ./base-mods.sh base-mods.tst
825s Testing base-modifications...
825s PASS : $test_mod MM-chebi.sam
825s PASS : $test_mod MM-double.sam
825s PASS : $test_mod MM-multi.sam
825s PASS : $test_mod MM-explicit.sam
825s PASS : $test_mod -x MM-explicit.sam
825s PASS : $test_mod -f 1 MM-explicit.sam
825s PASS : $test_mod MM-not-all-modded.sam
825s PASS : $pileup_mod < MM-pileup.sam
825s PASS : $pileup_mod < MM-pileup2.sam
825s PASS : $pileup_mod < MM-MNp.sam
825s PASS : $pileup_mod < MM-MNf1.sam (must exit non-zero)
825s PASS : $pileup_mod < MM-MNf2.sam (must exit non-zero)
825s PASS : $test_mod < MM-MNf1.sam (must exit non-zero)
825s PASS : $test_mod < MM-MNf2.sam (must exit non-zero)
825s PASS : $test_mod < MM-bounds+.sam (must exit non-zero)
825s PASS : $test_mod < MM-bounds-.sam (must exit non-zero)
825s 
825s Expected   passes:   16
825s Unexpected passes:   0
825s Expected   failures: 0
825s Unexpected failures: 0
825s REF_PATH=: test/sam test/ce.fa test/faidx/faidx.fa test/faidx/fastqs.fq
825s (Expect trailing 'x' message for " 	 -1,001x")
825s [W::hts_parse_decimal] Ignoring unknown characters after -1,001[x]
825s (Expect trailing 'k' message for "1.5e+3k")
825s [W::hts_parse_decimal] Ignoring unknown characters after 1.5e+3[k]
825s (Expect dropped fraction message for "12.3456k")
825s [W::hts_parse_decimal] Discarding fractional part of 12.3456k
825s [W::hts_parse_decimal] Discarding fractional part of 12.3456k
825s (Expect invalid numeric message for "A")
825s [W::hts_parse_decimal] Invalid numeric value A[truncated]
825s (Expect invalid numeric message for "G")
825s [W::hts_parse_decimal] Invalid numeric value G[truncated]
825s (Expect invalid numeric message for " +/-")
825s [W::hts_parse_decimal] Invalid numeric value +/-[truncated]
825s (Expect invalid numeric message for " 	 -.e+9999")
825s [W::hts_parse_decimal] Invalid numeric value -.e+9999[truncated]
825s test/test-regidx
825s cd test && REF_PATH=: ./test.pl ${TEST_OPTS:-}
825s bgzip round-trip no threads: .. ok
825s 
825s bgzip text mode round-trip no threads: .. ok
825s 
825s bgzip -b no threads: .. ok
825s 
825s bgzip -b -I no threads: .. ok
825s 
826s bgzip multifile no threads: .. ok
826s 
826s bgzip --output no threads: .. ok
826s 
826s bgzip round-trip  4 threads: .. ok
826s 
826s bgzip text mode round-trip  4 threads: .. ok
826s 
826s bgzip -b  4 threads: .. ok
826s 
826s bgzip -b -I  4 threads: .. ok
826s 
827s bgzip multifile  4 threads: .. ok
827s 
827s bgzip --output  4 threads: .. ok
827s 
827s test_index:
827s 	/tmp/autopkgtest.VLO3fa/autopkgtest_tmp/test/test_view  -l 0 -b -m 14 -x /tmp/WW8fyV4Q1_/index.bam.csi /tmp/autopkgtest.VLO3fa/autopkgtest_tmp/test/index.sam > /tmp/WW8fyV4Q1_/index.bam
827s .. ok
827s 
827s test_index:
827s 	/tmp/autopkgtest.VLO3fa/autopkgtest_tmp/test/test_index -c /tmp/WW8fyV4Q1_/index.bam
827s .. ok
827s 
827s test_index:
827s 	/tmp/autopkgtest.VLO3fa/autopkgtest_tmp/test/test_view  -l 0 -b -m 0 -x /tmp/WW8fyV4Q1_/index.bam.bai /tmp/autopkgtest.VLO3fa/autopkgtest_tmp/test/index.sam > /tmp/WW8fyV4Q1_/index.bam
827s .. ok
827s 
827s test_index:
827s 	/tmp/autopkgtest.VLO3fa/autopkgtest_tmp/test/test_index -b /tmp/WW8fyV4Q1_/index.bam
827s .. ok
827s 
827s test_index:
827s 	/tmp/autopkgtest.VLO3fa/autopkgtest_tmp/test/test_view  -l 0 -z -m 14 -x /tmp/WW8fyV4Q1_/index.sam.gz.csi /tmp/autopkgtest.VLO3fa/autopkgtest_tmp/test/index.sam > /tmp/WW8fyV4Q1_/index.sam.gz
827s .. ok
827s 
827s test_index:
827s 	/tmp/autopkgtest.VLO3fa/autopkgtest_tmp/test/test_index -c /tmp/WW8fyV4Q1_/index.sam.gz
827s .. ok
827s 
827s test_index:
827s 	/tmp/autopkgtest.VLO3fa/autopkgtest_tmp/test/test_view  -l 0 -z -m 0 -x /tmp/WW8fyV4Q1_/index.sam.gz.bai /tmp/autopkgtest.VLO3fa/autopkgtest_tmp/test/index.sam > /tmp/WW8fyV4Q1_/index.sam.gz
827s .. ok
827s 
827s test_index:
827s 	/tmp/autopkgtest.VLO3fa/autopkgtest_tmp/test/test_index -b /tmp/WW8fyV4Q1_/index.sam.gz
827s .. ok
827s 
827s test_index:
827s 	/tmp/autopkgtest.VLO3fa/autopkgtest_tmp/test/test_view  -l 0 -z -m 14 -x /tmp/WW8fyV4Q1_/index.sam.gz.csi /tmp/autopkgtest.VLO3fa/autopkgtest_tmp/test/index_dos.sam > /tmp/WW8fyV4Q1_/index.sam.gz
827s .. ok
827s 
827s test_index:
827s 	/tmp/autopkgtest.VLO3fa/autopkgtest_tmp/test/test_index -c /tmp/WW8fyV4Q1_/index.sam.gz
827s .. ok
827s 
827s test_index:
827s 	/tmp/autopkgtest.VLO3fa/autopkgtest_tmp/test/test_view  -l 0 -z -m 0 -x /tmp/WW8fyV4Q1_/index.sam.gz.bai /tmp/autopkgtest.VLO3fa/autopkgtest_tmp/test/index_dos.sam > /tmp/WW8fyV4Q1_/index.sam.gz
827s .. ok
827s 
827s test_index:
827s 	/tmp/autopkgtest.VLO3fa/autopkgtest_tmp/test/test_index -b /tmp/WW8fyV4Q1_/index.sam.gz
827s .. ok
827s 
827s test_index:
827s 	/tmp/autopkgtest.VLO3fa/autopkgtest_tmp/test/test_view  -l 0 -C -x /tmp/WW8fyV4Q1_/index.cram.crai /tmp/autopkgtest.VLO3fa/autopkgtest_tmp/test/index.sam > /tmp/WW8fyV4Q1_/index.cram
827s .. ok
827s 
827s test_index:
827s 	/tmp/autopkgtest.VLO3fa/autopkgtest_tmp/test/test_index /tmp/WW8fyV4Q1_/index.cram
827s .. ok
827s 
827s test_index:
827s 	/tmp/autopkgtest.VLO3fa/autopkgtest_tmp/test/test_view  -l 0 -b -m 14 -x /tmp/WW8fyV4Q1_/index.bcf.csi /tmp/autopkgtest.VLO3fa/autopkgtest_tmp/test/index.vcf > /tmp/WW8fyV4Q1_/index.bcf
827s .. ok
827s 
827s test_index:
827s 	/tmp/autopkgtest.VLO3fa/autopkgtest_tmp/test/test_index -c /tmp/WW8fyV4Q1_/index.bcf
827s .. ok
827s 
827s test_index:
827s 	/tmp/autopkgtest.VLO3fa/autopkgtest_tmp/test/test_view  -l 0 -z -m 14 -x /tmp/WW8fyV4Q1_/index.vcf.gz.csi /tmp/autopkgtest.VLO3fa/autopkgtest_tmp/test/index.vcf > /tmp/WW8fyV4Q1_/index.vcf.gz
827s .. ok
827s 
827s test_index:
827s 	/tmp/autopkgtest.VLO3fa/autopkgtest_tmp/test/test_index -c /tmp/WW8fyV4Q1_/index.vcf.gz
827s .. ok
827s 
827s test_index:
827s 	/tmp/autopkgtest.VLO3fa/autopkgtest_tmp/test/test_view  -l 0 -z -m 0 -x /tmp/WW8fyV4Q1_/index.vcf.gz.tbi /tmp/autopkgtest.VLO3fa/autopkgtest_tmp/test/index.vcf > /tmp/WW8fyV4Q1_/index.vcf.gz
827s .. ok
827s 
827s test_index:
827s 	/tmp/autopkgtest.VLO3fa/autopkgtest_tmp/test/test_index -t /tmp/WW8fyV4Q1_/index.vcf.gz
827s .. ok
827s 
827s test_index:
827s 	/tmp/autopkgtest.VLO3fa/autopkgtest_tmp/tabix /tmp/WW8fyV4Q1_/index.vcf.gz##idx##/tmp/WW8fyV4Q1_/index.vcf.gz.tbi 1:10000060-10000060
827s .. ok
827s 
827s test_index:
827s 	/tmp/autopkgtest.VLO3fa/autopkgtest_tmp/test/test_view /tmp/WW8fyV4Q1_/index2.bam 1:1000000-1000000
827s .. ok
827s 
827s test_index:
827s 	/tmp/autopkgtest.VLO3fa/autopkgtest_tmp/test/test_view /tmp/WW8fyV4Q1_/index2.bam 1:2000000-2000000
827s .. ok
827s 
827s test_index:
827s 	/tmp/autopkgtest.VLO3fa/autopkgtest_tmp/test/test_view /tmp/WW8fyV4Q1_/index2.bam 2:1000000-1000000
827s .. ok
827s 
827s test_index:
827s 	/tmp/autopkgtest.VLO3fa/autopkgtest_tmp/test/test_view /tmp/WW8fyV4Q1_/index2.bam 2:2000000-2000000
827s .. ok
827s 
827s test_index:
827s 	/tmp/autopkgtest.VLO3fa/autopkgtest_tmp/test/test_view -@4 -l 0 -b -m 14 -x /tmp/WW8fyV4Q1_/index.bam.csi /tmp/autopkgtest.VLO3fa/autopkgtest_tmp/test/index.sam > /tmp/WW8fyV4Q1_/index.bam
827s .. ok
827s 
827s test_index:
827s 	/tmp/autopkgtest.VLO3fa/autopkgtest_tmp/test/test_index -c /tmp/WW8fyV4Q1_/index.bam
827s .. ok
827s 
827s test_index:
827s 	/tmp/autopkgtest.VLO3fa/autopkgtest_tmp/test/test_view -@4 -l 0 -b -m 0 -x /tmp/WW8fyV4Q1_/index.bam.bai /tmp/autopkgtest.VLO3fa/autopkgtest_tmp/test/index.sam > /tmp/WW8fyV4Q1_/index.bam
827s .. ok
827s 
827s test_index:
827s 	/tmp/autopkgtest.VLO3fa/autopkgtest_tmp/test/test_index -b /tmp/WW8fyV4Q1_/index.bam
827s .. ok
827s 
827s test_index:
827s 	/tmp/autopkgtest.VLO3fa/autopkgtest_tmp/test/test_view -@4 -l 0 -z -m 14 -x /tmp/WW8fyV4Q1_/index.sam.gz.csi /tmp/autopkgtest.VLO3fa/autopkgtest_tmp/test/index.sam > /tmp/WW8fyV4Q1_/index.sam.gz
827s .. ok
827s 
827s test_index:
827s 	/tmp/autopkgtest.VLO3fa/autopkgtest_tmp/test/test_index -c /tmp/WW8fyV4Q1_/index.sam.gz
827s .. ok
827s 
827s test_index:
827s 	/tmp/autopkgtest.VLO3fa/autopkgtest_tmp/test/test_view -@4 -l 0 -z -m 0 -x /tmp/WW8fyV4Q1_/index.sam.gz.bai /tmp/autopkgtest.VLO3fa/autopkgtest_tmp/test/index.sam > /tmp/WW8fyV4Q1_/index.sam.gz
827s .. ok
827s 
827s test_index:
827s 	/tmp/autopkgtest.VLO3fa/autopkgtest_tmp/test/test_index -b /tmp/WW8fyV4Q1_/index.sam.gz
827s .. ok
827s 
827s test_index:
827s 	/tmp/autopkgtest.VLO3fa/autopkgtest_tmp/test/test_view -@4 -l 0 -z -m 14 -x /tmp/WW8fyV4Q1_/index.sam.gz.csi /tmp/autopkgtest.VLO3fa/autopkgtest_tmp/test/index_dos.sam > /tmp/WW8fyV4Q1_/index.sam.gz
827s .. ok
827s 
827s test_index:
827s 	/tmp/autopkgtest.VLO3fa/autopkgtest_tmp/test/test_index -c /tmp/WW8fyV4Q1_/index.sam.gz
827s .. ok
827s 
827s test_index:
827s 	/tmp/autopkgtest.VLO3fa/autopkgtest_tmp/test/test_view -@4 -l 0 -z -m 0 -x /tmp/WW8fyV4Q1_/index.sam.gz.bai /tmp/autopkgtest.VLO3fa/autopkgtest_tmp/test/index_dos.sam > /tmp/WW8fyV4Q1_/index.sam.gz
827s .. ok
827s 
827s test_index:
827s 	/tmp/autopkgtest.VLO3fa/autopkgtest_tmp/test/test_index -b /tmp/WW8fyV4Q1_/index.sam.gz
827s .. ok
827s 
827s test_index:
827s 	/tmp/autopkgtest.VLO3fa/autopkgtest_tmp/test/test_view -@4 -l 0 -C -x /tmp/WW8fyV4Q1_/index.cram.crai /tmp/autopkgtest.VLO3fa/autopkgtest_tmp/test/index.sam > /tmp/WW8fyV4Q1_/index.cram
827s .. ok
827s 
827s test_index:
827s 	/tmp/autopkgtest.VLO3fa/autopkgtest_tmp/test/test_index /tmp/WW8fyV4Q1_/index.cram
827s .. ok
827s 
827s test_index:
827s 	/tmp/autopkgtest.VLO3fa/autopkgtest_tmp/test/test_view -@4 -l 0 -b -m 14 -x /tmp/WW8fyV4Q1_/index.bcf.csi /tmp/autopkgtest.VLO3fa/autopkgtest_tmp/test/index.vcf > /tmp/WW8fyV4Q1_/index.bcf
827s .. ok
827s 
827s test_index:
827s 	/tmp/autopkgtest.VLO3fa/autopkgtest_tmp/test/test_index -c /tmp/WW8fyV4Q1_/index.bcf
827s .. ok
827s 
827s test_index:
827s 	/tmp/autopkgtest.VLO3fa/autopkgtest_tmp/test/test_view -@4 -l 0 -z -m 14 -x /tmp/WW8fyV4Q1_/index.vcf.gz.csi /tmp/autopkgtest.VLO3fa/autopkgtest_tmp/test/index.vcf > /tmp/WW8fyV4Q1_/index.vcf.gz
827s .. ok
827s 
827s test_index:
827s 	/tmp/autopkgtest.VLO3fa/autopkgtest_tmp/test/test_index -c /tmp/WW8fyV4Q1_/index.vcf.gz
827s .. ok
827s 
827s test_index:
827s 	/tmp/autopkgtest.VLO3fa/autopkgtest_tmp/test/test_view -@4 -l 0 -z -m 0 -x /tmp/WW8fyV4Q1_/index.vcf.gz.tbi /tmp/autopkgtest.VLO3fa/autopkgtest_tmp/test/index.vcf > /tmp/WW8fyV4Q1_/index.vcf.gz
827s .. ok
827s 
827s test_index:
827s 	/tmp/autopkgtest.VLO3fa/autopkgtest_tmp/test/test_index -t /tmp/WW8fyV4Q1_/index.vcf.gz
827s .. ok
827s 
827s test_index:
827s 	/tmp/autopkgtest.VLO3fa/autopkgtest_tmp/tabix /tmp/WW8fyV4Q1_/index.vcf.gz##idx##/tmp/WW8fyV4Q1_/index.vcf.gz.tbi 1:10000060-10000060
827s .. ok
827s 
827s test_index:
827s 	/tmp/autopkgtest.VLO3fa/autopkgtest_tmp/test/test_view /tmp/WW8fyV4Q1_/index2.bam 1:1000000-1000000
827s .. ok
827s 
827s test_index:
827s 	/tmp/autopkgtest.VLO3fa/autopkgtest_tmp/test/test_view /tmp/WW8fyV4Q1_/index2.bam 1:2000000-2000000
827s .. ok
827s 
827s test_index:
827s 	/tmp/autopkgtest.VLO3fa/autopkgtest_tmp/test/test_view /tmp/WW8fyV4Q1_/index2.bam 2:1000000-1000000
827s .. ok
827s 
827s test_index:
827s 	/tmp/autopkgtest.VLO3fa/autopkgtest_tmp/test/test_view /tmp/WW8fyV4Q1_/index2.bam 2:2000000-2000000
827s .. ok
827s 
827s test_view testing multi-ref CRAM modes:
827s   ./test_view  -o seqs_per_slice=100 -o no_ref=1 -o multi_seq_per_slice=-1 -S -C multi_ref.tmp.sam > multi_ref.tmp.cram
827s   ./test_view  multi_ref.tmp.cram > multi_ref.tmp.sam_
827s   ./compare_sam.pl multi_ref.tmp.sam multi_ref.tmp.sam_
827s   ./test_view  -o seqs_per_slice=100 -o no_ref=1 -o multi_seq_per_slice=0 -S -C multi_ref.tmp.sam > multi_ref.tmp.cram
828s   ./test_view  multi_ref.tmp.cram > multi_ref.tmp.sam_
828s   ./compare_sam.pl multi_ref.tmp.sam multi_ref.tmp.sam_
828s   ./test_view  -o seqs_per_slice=100 -o no_ref=1 -o multi_seq_per_slice=1 -S -C multi_ref.tmp.sam > multi_ref.tmp.cram
828s   ./test_view  multi_ref.tmp.cram > multi_ref.tmp.sam_
828s   ./compare_sam.pl multi_ref.tmp.sam multi_ref.tmp.sam_
828s .. ok
828s 
828s test_view testing multi-ref CRAM modes:
828s   ./test_view -@4 -o seqs_per_slice=100 -o no_ref=1 -o multi_seq_per_slice=-1 -S -C multi_ref.tmp.sam > multi_ref.tmp.cram
828s   ./test_view -@4 multi_ref.tmp.cram > multi_ref.tmp.sam_
828s   ./compare_sam.pl multi_ref.tmp.sam multi_ref.tmp.sam_
828s   ./test_view -@4 -o seqs_per_slice=100 -o no_ref=1 -o multi_seq_per_slice=0 -S -C multi_ref.tmp.sam > multi_ref.tmp.cram
828s   ./test_view -@4 multi_ref.tmp.cram > multi_ref.tmp.sam_
828s   ./compare_sam.pl multi_ref.tmp.sam multi_ref.tmp.sam_
828s   ./test_view -@4 -o seqs_per_slice=100 -o no_ref=1 -o multi_seq_per_slice=1 -S -C multi_ref.tmp.sam > multi_ref.tmp.cram
828s   ./test_view -@4 multi_ref.tmp.cram > multi_ref.tmp.sam_
828s   ./compare_sam.pl multi_ref.tmp.sam multi_ref.tmp.sam_
828s .. ok
828s 
828s test_view testing auxf#values.sam, ref auxf.fa:
828s   ./test_view  -S -l0 -b auxf#values.sam > auxf#values.tmp.bam
828s   ./test_view  auxf#values.tmp.bam > auxf#values.tmp.bam.sam_
828s   ./compare_sam.pl auxf#values.sam auxf#values.tmp.bam.sam_
828s   ./test_view  -t auxf.fa -S -C -o VERSION=2.1 auxf#values.sam > auxf#values.tmp.cram
828s   ./test_view  -D auxf#values.tmp.cram > auxf#values.tmp.cram.sam_
828s   ./compare_sam.pl -nomd auxf#values.sam auxf#values.tmp.cram.sam_
828s   ./test_view  -t auxf.fa -C -o VERSION=3.0 auxf#values.tmp.bam > auxf#values.tmp.bam.cram
828s   ./test_view  auxf#values.tmp.bam.cram > auxf#values.tmp.bam.cram.bam.sam_
828s   ./compare_sam.pl -nomd auxf#values.sam auxf#values.tmp.bam.cram.bam.sam_
828s   ./test_view  -i reference=auxf.fa auxf#values_java.cram > auxf#values_java.tmp.sam_
828s   ./compare_sam.pl -Baux -nomd auxf#values.sam auxf#values_java.tmp.sam_
828s .. ok
828s 
828s test_view testing c1#bounds.sam, ref c1.fa:
828s   ./test_view  -S -l0 -b c1#bounds.sam > c1#bounds.tmp.bam
828s   ./test_view  c1#bounds.tmp.bam > c1#bounds.tmp.bam.sam_
828s   ./compare_sam.pl c1#bounds.sam c1#bounds.tmp.bam.sam_
828s   ./test_view  -t c1.fa -S -C -o VERSION=2.1 c1#bounds.sam > c1#bounds.tmp.cram
828s   ./test_view  -D c1#bounds.tmp.cram > c1#bounds.tmp.cram.sam_
828s   ./compare_sam.pl -nomd c1#bounds.sam c1#bounds.tmp.cram.sam_
828s   ./test_view  -t c1.fa -C -o VERSION=3.0 c1#bounds.tmp.bam > c1#bounds.tmp.bam.cram
828s   ./test_view  c1#bounds.tmp.bam.cram > c1#bounds.tmp.bam.cram.bam.sam_
828s   ./compare_sam.pl -nomd c1#bounds.sam c1#bounds.tmp.bam.cram.bam.sam_
828s .. ok
828s 
828s test_view testing c1#clip.sam, ref c1.fa:
828s   ./test_view  -S -l0 -b c1#clip.sam > c1#clip.tmp.bam
828s   ./test_view  c1#clip.tmp.bam > c1#clip.tmp.bam.sam_
828s   ./compare_sam.pl c1#clip.sam c1#clip.tmp.bam.sam_
828s   ./test_view  -t c1.fa -S -C -o VERSION=2.1 c1#clip.sam > c1#clip.tmp.cram
828s   ./test_view  -D c1#clip.tmp.cram > c1#clip.tmp.cram.sam_
828s   ./compare_sam.pl -nomd c1#clip.sam c1#clip.tmp.cram.sam_
828s   ./test_view  -t c1.fa -C -o VERSION=3.0 c1#clip.tmp.bam > c1#clip.tmp.bam.cram
828s   ./test_view  c1#clip.tmp.bam.cram > c1#clip.tmp.bam.cram.bam.sam_
828s   ./compare_sam.pl -nomd c1#clip.sam c1#clip.tmp.bam.cram.bam.sam_
828s .. ok
828s 
828s test_view testing c1#noseq.sam, ref c1.fa:
828s   ./test_view  -S -l0 -b c1#noseq.sam > c1#noseq.tmp.bam
828s   ./test_view  c1#noseq.tmp.bam > c1#noseq.tmp.bam.sam_
828s   ./compare_sam.pl c1#noseq.sam c1#noseq.tmp.bam.sam_
828s   ./test_view  -t c1.fa -S -C -o VERSION=2.1 c1#noseq.sam > c1#noseq.tmp.cram
828s   ./test_view  -D c1#noseq.tmp.cram > c1#noseq.tmp.cram.sam_
828s   ./compare_sam.pl -nomd c1#noseq.sam c1#noseq.tmp.cram.sam_
828s   ./test_view  -t c1.fa -C -o VERSION=3.0 c1#noseq.tmp.bam > c1#noseq.tmp.bam.cram
828s   ./test_view  c1#noseq.tmp.bam.cram > c1#noseq.tmp.bam.cram.bam.sam_
828s   ./compare_sam.pl -nomd c1#noseq.sam c1#noseq.tmp.bam.cram.bam.sam_
828s .. ok
828s 
828s test_view testing c1#pad1.sam, ref c1.fa:
828s   ./test_view  -S -l0 -b c1#pad1.sam > c1#pad1.tmp.bam
828s   ./test_view  c1#pad1.tmp.bam > c1#pad1.tmp.bam.sam_
828s   ./compare_sam.pl c1#pad1.sam c1#pad1.tmp.bam.sam_
828s   ./test_view  -t c1.fa -S -C -o VERSION=2.1 c1#pad1.sam > c1#pad1.tmp.cram
829s   ./test_view  -D c1#pad1.tmp.cram > c1#pad1.tmp.cram.sam_
829s   ./compare_sam.pl -nomd c1#pad1.sam c1#pad1.tmp.cram.sam_
829s   ./test_view  -t c1.fa -C -o VERSION=3.0 c1#pad1.tmp.bam > c1#pad1.tmp.bam.cram
829s   ./test_view  c1#pad1.tmp.bam.cram > c1#pad1.tmp.bam.cram.bam.sam_
829s   ./compare_sam.pl -nomd c1#pad1.sam c1#pad1.tmp.bam.cram.bam.sam_
829s .. ok
829s 
829s test_view testing c1#pad2.sam, ref c1.fa:
829s   ./test_view  -S -l0 -b c1#pad2.sam > c1#pad2.tmp.bam
829s   ./test_view  c1#pad2.tmp.bam > c1#pad2.tmp.bam.sam_
829s   ./compare_sam.pl c1#pad2.sam c1#pad2.tmp.bam.sam_
829s   ./test_view  -t c1.fa -S -C -o VERSION=2.1 c1#pad2.sam > c1#pad2.tmp.cram
829s   ./test_view  -D c1#pad2.tmp.cram > c1#pad2.tmp.cram.sam_
829s   ./compare_sam.pl -nomd c1#pad2.sam c1#pad2.tmp.cram.sam_
829s   ./test_view  -t c1.fa -C -o VERSION=3.0 c1#pad2.tmp.bam > c1#pad2.tmp.bam.cram
829s   ./test_view  c1#pad2.tmp.bam.cram > c1#pad2.tmp.bam.cram.bam.sam_
829s   ./compare_sam.pl -nomd c1#pad2.sam c1#pad2.tmp.bam.cram.bam.sam_
829s .. ok
829s 
829s test_view testing c1#pad3.sam, ref c1.fa:
829s   ./test_view  -S -l0 -b c1#pad3.sam > c1#pad3.tmp.bam
829s   ./test_view  c1#pad3.tmp.bam > c1#pad3.tmp.bam.sam_
829s   ./compare_sam.pl c1#pad3.sam c1#pad3.tmp.bam.sam_
829s   ./test_view  -t c1.fa -S -C -o VERSION=2.1 c1#pad3.sam > c1#pad3.tmp.cram
829s   ./test_view  -D c1#pad3.tmp.cram > c1#pad3.tmp.cram.sam_
829s   ./compare_sam.pl -nomd c1#pad3.sam c1#pad3.tmp.cram.sam_
829s   ./test_view  -t c1.fa -C -o VERSION=3.0 c1#pad3.tmp.bam > c1#pad3.tmp.bam.cram
829s   ./test_view  c1#pad3.tmp.bam.cram > c1#pad3.tmp.bam.cram.bam.sam_
829s   ./compare_sam.pl -nomd c1#pad3.sam c1#pad3.tmp.bam.cram.bam.sam_
829s .. ok
829s 
829s test_view testing c1#unknown.sam, ref c1.fa:
829s   ./test_view  -S -l0 -b c1#unknown.sam > c1#unknown.tmp.bam
829s   ./test_view  c1#unknown.tmp.bam > c1#unknown.tmp.bam.sam_
829s   ./compare_sam.pl c1#unknown.sam c1#unknown.tmp.bam.sam_
829s   ./test_view  -t c1.fa -S -C -o VERSION=2.1 c1#unknown.sam > c1#unknown.tmp.cram
829s   ./test_view  -D c1#unknown.tmp.cram > c1#unknown.tmp.cram.sam_
829s   ./compare_sam.pl -nomd c1#unknown.sam c1#unknown.tmp.cram.sam_
829s   ./test_view  -t c1.fa -C -o VERSION=3.0 c1#unknown.tmp.bam > c1#unknown.tmp.bam.cram
829s   ./test_view  c1#unknown.tmp.bam.cram > c1#unknown.tmp.bam.cram.bam.sam_
829s   ./compare_sam.pl -nomd c1#unknown.sam c1#unknown.tmp.bam.cram.bam.sam_
829s .. ok
829s 
829s test_view testing c2#pad.sam, ref c2.fa:
829s   ./test_view  -S -l0 -b c2#pad.sam > c2#pad.tmp.bam
829s   ./test_view  c2#pad.tmp.bam > c2#pad.tmp.bam.sam_
829s   ./compare_sam.pl c2#pad.sam c2#pad.tmp.bam.sam_
829s   ./test_view  -t c2.fa -S -C -o VERSION=2.1 c2#pad.sam > c2#pad.tmp.cram
829s   ./test_view  -D c2#pad.tmp.cram > c2#pad.tmp.cram.sam_
829s   ./compare_sam.pl -nomd c2#pad.sam c2#pad.tmp.cram.sam_
829s   ./test_view  -t c2.fa -C -o VERSION=3.0 c2#pad.tmp.bam > c2#pad.tmp.bam.cram
829s   ./test_view  c2#pad.tmp.bam.cram > c2#pad.tmp.bam.cram.bam.sam_
829s   ./compare_sam.pl -nomd c2#pad.sam c2#pad.tmp.bam.cram.bam.sam_
829s .. ok
829s 
829s test_view testing ce#1.sam, ref ce.fa:
829s   ./test_view  -S -l0 -b ce#1.sam > ce#1.tmp.bam
829s   ./test_view  ce#1.tmp.bam > ce#1.tmp.bam.sam_
829s   ./compare_sam.pl ce#1.sam ce#1.tmp.bam.sam_
829s   ./test_view  -t ce.fa -S -C -o VERSION=2.1 ce#1.sam > ce#1.tmp.cram
829s   ./test_view  -D ce#1.tmp.cram > ce#1.tmp.cram.sam_
829s   ./compare_sam.pl -nomd ce#1.sam ce#1.tmp.cram.sam_
829s   ./test_view  -t ce.fa -C -o VERSION=3.0 ce#1.tmp.bam > ce#1.tmp.bam.cram
829s   ./test_view  ce#1.tmp.bam.cram > ce#1.tmp.bam.cram.bam.sam_
829s   ./compare_sam.pl -nomd ce#1.sam ce#1.tmp.bam.cram.bam.sam_
829s .. ok
829s 
829s test_view testing ce#1000.sam, ref ce.fa:
829s   ./test_view  -S -b ce#1000.sam > ce#1000.tmp.bam
829s   ./test_view  ce#1000.tmp.bam > ce#1000.tmp.bam.sam_
829s   ./compare_sam.pl ce#1000.sam ce#1000.tmp.bam.sam_
829s   ./test_view  -S -l0 -b ce#1000.sam > ce#1000.tmp.bam
829s   ./test_view  ce#1000.tmp.bam > ce#1000.tmp.bam.sam_
829s   ./compare_sam.pl ce#1000.sam ce#1000.tmp.bam.sam_
829s   ./test_view  -t ce.fa -S -C -o VERSION=2.1 ce#1000.sam > ce#1000.tmp.cram
829s   ./test_view  -D ce#1000.tmp.cram > ce#1000.tmp.cram.sam_
829s   ./compare_sam.pl -nomd ce#1000.sam ce#1000.tmp.cram.sam_
829s   ./test_view  -t ce.fa -S -l0 -C -o VERSION=3.0 ce#1000.sam > ce#1000.tmp.cram
829s   ./test_view  -D ce#1000.tmp.cram > ce#1000.tmp.cram.sam_
829s   ./compare_sam.pl -nomd ce#1000.sam ce#1000.tmp.cram.sam_
829s   ./test_view  -t ce.fa -C -o VERSION=3.0 ce#1000.tmp.bam > ce#1000.tmp.bam.cram
829s   ./test_view  ce#1000.tmp.bam.cram > ce#1000.tmp.bam.cram.bam.sam_
829s   ./compare_sam.pl -nomd ce#1000.sam ce#1000.tmp.bam.cram.bam.sam_
829s .. ok
829s 
829s test_view testing ce#2.sam, ref ce.fa:
829s   ./test_view  -S -l0 -b ce#2.sam > ce#2.tmp.bam
829s   ./test_view  ce#2.tmp.bam > ce#2.tmp.bam.sam_
829s   ./compare_sam.pl ce#2.sam ce#2.tmp.bam.sam_
829s   ./test_view  -t ce.fa -S -C -o VERSION=2.1 ce#2.sam > ce#2.tmp.cram
829s   ./test_view  -D ce#2.tmp.cram > ce#2.tmp.cram.sam_
829s   ./compare_sam.pl -nomd ce#2.sam ce#2.tmp.cram.sam_
829s   ./test_view  -t ce.fa -C -o VERSION=3.0 ce#2.tmp.bam > ce#2.tmp.bam.cram
829s   ./test_view  ce#2.tmp.bam.cram > ce#2.tmp.bam.cram.bam.sam_
830s   ./compare_sam.pl -nomd ce#2.sam ce#2.tmp.bam.cram.bam.sam_
830s .. ok
830s 
830s test_view testing ce#5.sam, ref ce.fa:
830s   ./test_view  -S -l0 -b ce#5.sam > ce#5.tmp.bam
830s   ./test_view  ce#5.tmp.bam > ce#5.tmp.bam.sam_
830s   ./compare_sam.pl ce#5.sam ce#5.tmp.bam.sam_
830s   ./test_view  -t ce.fa -S -C -o VERSION=2.1 ce#5.sam > ce#5.tmp.cram
830s   ./test_view  -D ce#5.tmp.cram > ce#5.tmp.cram.sam_
830s   ./compare_sam.pl -nomd ce#5.sam ce#5.tmp.cram.sam_
830s   ./test_view  -t ce.fa -C -o VERSION=3.0 ce#5.tmp.bam > ce#5.tmp.bam.cram
830s   ./test_view  ce#5.tmp.bam.cram > ce#5.tmp.bam.cram.bam.sam_
830s   ./compare_sam.pl -nomd ce#5.sam ce#5.tmp.bam.cram.bam.sam_
830s .. ok
830s 
830s test_view testing ce#5b.sam, ref ce.fa:
830s   ./test_view  -S -l0 -b ce#5b.sam > ce#5b.tmp.bam
830s   ./test_view  ce#5b.tmp.bam > ce#5b.tmp.bam.sam_
830s   ./compare_sam.pl ce#5b.sam ce#5b.tmp.bam.sam_
830s   ./test_view  -t ce.fa -S -C -o VERSION=2.1 ce#5b.sam > ce#5b.tmp.cram
830s   ./test_view  -D ce#5b.tmp.cram > ce#5b.tmp.cram.sam_
830s   ./compare_sam.pl -nomd ce#5b.sam ce#5b.tmp.cram.sam_
830s   ./test_view  -t ce.fa -C -o VERSION=3.0 ce#5b.tmp.bam > ce#5b.tmp.bam.cram
830s   ./test_view  ce#5b.tmp.bam.cram > ce#5b.tmp.bam.cram.bam.sam_
830s   ./compare_sam.pl -nomd ce#5b.sam ce#5b.tmp.bam.cram.bam.sam_
830s   ./test_view  -i reference=ce.fa ce#5b_java.cram > ce#5b_java.tmp.sam_
830s   ./compare_sam.pl -Baux -nomd ce#5b.sam ce#5b_java.tmp.sam_
830s .. ok
830s 
830s test_view testing ce#large_seq.sam, ref ce.fa:
830s   ./test_view  -S -l0 -b ce#large_seq.sam > ce#large_seq.tmp.bam
830s   ./test_view  ce#large_seq.tmp.bam > ce#large_seq.tmp.bam.sam_
830s   ./compare_sam.pl ce#large_seq.sam ce#large_seq.tmp.bam.sam_
830s   ./test_view  -t ce.fa -S -C -o VERSION=2.1 ce#large_seq.sam > ce#large_seq.tmp.cram
830s   ./test_view  -D ce#large_seq.tmp.cram > ce#large_seq.tmp.cram.sam_
830s   ./compare_sam.pl -nomd ce#large_seq.sam ce#large_seq.tmp.cram.sam_
830s   ./test_view  -t ce.fa -C -o VERSION=3.0 ce#large_seq.tmp.bam > ce#large_seq.tmp.bam.cram
830s   ./test_view  ce#large_seq.tmp.bam.cram > ce#large_seq.tmp.bam.cram.bam.sam_
830s   ./compare_sam.pl -nomd ce#large_seq.sam ce#large_seq.tmp.bam.cram.bam.sam_
830s .. ok
830s 
830s test_view testing ce#supp.sam, ref ce.fa:
830s   ./test_view  -S -l0 -b ce#supp.sam > ce#supp.tmp.bam
830s   ./test_view  ce#supp.tmp.bam > ce#supp.tmp.bam.sam_
830s   ./compare_sam.pl ce#supp.sam ce#supp.tmp.bam.sam_
830s   ./test_view  -t ce.fa -S -C -o VERSION=2.1 ce#supp.sam > ce#supp.tmp.cram
830s   ./test_view  -D ce#supp.tmp.cram > ce#supp.tmp.cram.sam_
830s   ./compare_sam.pl -nomd ce#supp.sam ce#supp.tmp.cram.sam_
830s   ./test_view  -t ce.fa -C -o VERSION=3.0 ce#supp.tmp.bam > ce#supp.tmp.bam.cram
830s   ./test_view  ce#supp.tmp.bam.cram > ce#supp.tmp.bam.cram.bam.sam_
830s   ./compare_sam.pl -nomd ce#supp.sam ce#supp.tmp.bam.cram.bam.sam_
830s .. ok
830s 
830s test_view testing ce#tag_depadded.sam, ref ce.fa:
830s   ./test_view  -S -l0 -b ce#tag_depadded.sam > ce#tag_depadded.tmp.bam
830s   ./test_view  ce#tag_depadded.tmp.bam > ce#tag_depadded.tmp.bam.sam_
830s   ./compare_sam.pl ce#tag_depadded.sam ce#tag_depadded.tmp.bam.sam_
830s   ./test_view  -t ce.fa -S -C -o VERSION=2.1 ce#tag_depadded.sam > ce#tag_depadded.tmp.cram
830s   ./test_view  -D ce#tag_depadded.tmp.cram > ce#tag_depadded.tmp.cram.sam_
830s   ./compare_sam.pl -nomd ce#tag_depadded.sam ce#tag_depadded.tmp.cram.sam_
830s   ./test_view  -t ce.fa -C -o VERSION=3.0 ce#tag_depadded.tmp.bam > ce#tag_depadded.tmp.bam.cram
830s   ./test_view  ce#tag_depadded.tmp.bam.cram > ce#tag_depadded.tmp.bam.cram.bam.sam_
830s   ./compare_sam.pl -nomd ce#tag_depadded.sam ce#tag_depadded.tmp.bam.cram.bam.sam_
830s .. ok
830s 
830s test_view testing ce#tag_padded.sam, ref ce.fa:
830s   ./test_view  -S -l0 -b ce#tag_padded.sam > ce#tag_padded.tmp.bam
830s   ./test_view  ce#tag_padded.tmp.bam > ce#tag_padded.tmp.bam.sam_
830s   ./compare_sam.pl ce#tag_padded.sam ce#tag_padded.tmp.bam.sam_
830s   ./test_view  -t ce.fa -S -C -o VERSION=2.1 ce#tag_padded.sam > ce#tag_padded.tmp.cram
830s   ./test_view  -D ce#tag_padded.tmp.cram > ce#tag_padded.tmp.cram.sam_
830s   ./compare_sam.pl -nomd ce#tag_padded.sam ce#tag_padded.tmp.cram.sam_
831s   ./test_view  -t ce.fa -C -o VERSION=3.0 ce#tag_padded.tmp.bam > ce#tag_padded.tmp.bam.cram
831s   ./test_view  ce#tag_padded.tmp.bam.cram > ce#tag_padded.tmp.bam.cram.bam.sam_
831s   ./compare_sam.pl -nomd ce#tag_padded.sam ce#tag_padded.tmp.bam.cram.bam.sam_
831s .. ok
831s 
831s test_view testing ce#unmap.sam, ref ce.fa:
831s   ./test_view  -S -l0 -b ce#unmap.sam > ce#unmap.tmp.bam
831s   ./test_view  ce#unmap.tmp.bam > ce#unmap.tmp.bam.sam_
831s   ./compare_sam.pl ce#unmap.sam ce#unmap.tmp.bam.sam_
831s   ./test_view  -t ce.fa -S -C -o VERSION=2.1 ce#unmap.sam > ce#unmap.tmp.cram
831s   ./test_view  -D ce#unmap.tmp.cram > ce#unmap.tmp.cram.sam_
831s   ./compare_sam.pl -nomd ce#unmap.sam ce#unmap.tmp.cram.sam_
831s   ./test_view  -t ce.fa -C -o VERSION=3.0 ce#unmap.tmp.bam > ce#unmap.tmp.bam.cram
831s   ./test_view  ce#unmap.tmp.bam.cram > ce#unmap.tmp.bam.cram.bam.sam_
831s   ./compare_sam.pl -nomd ce#unmap.sam ce#unmap.tmp.bam.cram.bam.sam_
831s .. ok
831s 
831s test_view testing ce#unmap1.sam, ref ce.fa:
831s   ./test_view  -S -l0 -b ce#unmap1.sam > ce#unmap1.tmp.bam
831s   ./test_view  ce#unmap1.tmp.bam > ce#unmap1.tmp.bam.sam_
831s   ./compare_sam.pl ce#unmap1.sam ce#unmap1.tmp.bam.sam_
831s   ./test_view  -t ce.fa -S -C -o VERSION=2.1 ce#unmap1.sam > ce#unmap1.tmp.cram
831s   ./test_view  -D ce#unmap1.tmp.cram > ce#unmap1.tmp.cram.sam_
831s   ./compare_sam.pl -nomd ce#unmap1.sam ce#unmap1.tmp.cram.sam_
831s   ./test_view  -t ce.fa -C -o VERSION=3.0 ce#unmap1.tmp.bam > ce#unmap1.tmp.bam.cram
831s   ./test_view  ce#unmap1.tmp.bam.cram > ce#unmap1.tmp.bam.cram.bam.sam_
831s   ./compare_sam.pl -nomd ce#unmap1.sam ce#unmap1.tmp.bam.cram.bam.sam_
831s .. ok
831s 
831s test_view testing ce#unmap2.sam, ref ce.fa:
831s   ./test_view  -S -l0 -b ce#unmap2.sam > ce#unmap2.tmp.bam
831s   ./test_view  ce#unmap2.tmp.bam > ce#unmap2.tmp.bam.sam_
831s   ./compare_sam.pl ce#unmap2.sam ce#unmap2.tmp.bam.sam_
831s   ./test_view  -t ce.fa -S -C -o VERSION=2.1 ce#unmap2.sam > ce#unmap2.tmp.cram
831s   ./test_view  -D ce#unmap2.tmp.cram > ce#unmap2.tmp.cram.sam_
831s   ./compare_sam.pl -nomd ce#unmap2.sam ce#unmap2.tmp.cram.sam_
831s   ./test_view  -t ce.fa -C -o VERSION=3.0 ce#unmap2.tmp.bam > ce#unmap2.tmp.bam.cram
831s   ./test_view  ce#unmap2.tmp.bam.cram > ce#unmap2.tmp.bam.cram.bam.sam_
831s   ./compare_sam.pl -nomd ce#unmap2.sam ce#unmap2.tmp.bam.cram.bam.sam_
831s .. ok
831s 
831s test_view testing md#1.sam, ref md.fa:
831s   ./test_view  -S -l0 -b md#1.sam > md#1.tmp.bam
831s   ./test_view  md#1.tmp.bam > md#1.tmp.bam.sam_
831s   ./compare_sam.pl md#1.sam md#1.tmp.bam.sam_
831s   ./test_view  -t md.fa -S -C -o VERSION=2.1 md#1.sam > md#1.tmp.cram
831s   ./test_view  -D md#1.tmp.cram > md#1.tmp.cram.sam_
831s   ./compare_sam.pl  md#1.sam md#1.tmp.cram.sam_
831s   ./test_view  -t md.fa -C -o VERSION=3.0 md#1.tmp.bam > md#1.tmp.bam.cram
831s   ./test_view  md#1.tmp.bam.cram > md#1.tmp.bam.cram.bam.sam_
831s   ./compare_sam.pl  md#1.sam md#1.tmp.bam.cram.bam.sam_
831s .. ok
831s 
831s test_view testing xx#blank.sam, ref xx.fa:
831s   ./test_view  -S -l0 -b xx#blank.sam > xx#blank.tmp.bam
831s   ./test_view  xx#blank.tmp.bam > xx#blank.tmp.bam.sam_
831s   ./compare_sam.pl xx#blank.sam xx#blank.tmp.bam.sam_
831s   ./test_view  -t xx.fa -S -C -o VERSION=2.1 xx#blank.sam > xx#blank.tmp.cram
831s   ./test_view  -D xx#blank.tmp.cram > xx#blank.tmp.cram.sam_
831s   ./compare_sam.pl -nomd xx#blank.sam xx#blank.tmp.cram.sam_
831s   ./test_view  -t xx.fa -C -o VERSION=3.0 xx#blank.tmp.bam > xx#blank.tmp.bam.cram
831s   ./test_view  xx#blank.tmp.bam.cram > xx#blank.tmp.bam.cram.bam.sam_
831s   ./compare_sam.pl -nomd xx#blank.sam xx#blank.tmp.bam.cram.bam.sam_
831s .. ok
831s 
831s test_view testing xx#large_aux.sam, ref xx.fa:
831s   ./test_view  -S -l0 -b xx#large_aux.sam > xx#large_aux.tmp.bam
831s   ./test_view  xx#large_aux.tmp.bam > xx#large_aux.tmp.bam.sam_
831s   ./compare_sam.pl xx#large_aux.sam xx#large_aux.tmp.bam.sam_
831s   ./test_view  -t xx.fa -S -C -o VERSION=2.1 xx#large_aux.sam > xx#large_aux.tmp.cram
831s   ./test_view  -D xx#large_aux.tmp.cram > xx#large_aux.tmp.cram.sam_
831s   ./compare_sam.pl -nomd xx#large_aux.sam xx#large_aux.tmp.cram.sam_
831s   ./test_view  -t xx.fa -C -o VERSION=3.0 xx#large_aux.tmp.bam > xx#large_aux.tmp.bam.cram
831s   ./test_view  xx#large_aux.tmp.bam.cram > xx#large_aux.tmp.bam.cram.bam.sam_
831s   ./compare_sam.pl -nomd xx#large_aux.sam xx#large_aux.tmp.bam.cram.bam.sam_
831s   ./test_view  -i reference=xx.fa xx#large_aux_java.cram > xx#large_aux_java.tmp.sam_
831s [W::sanitise_SQ_lines] Header @SQ length mismatch for ref xx, 30 vs 20
831s   ./compare_sam.pl -Baux -nomd xx#large_aux.sam xx#large_aux_java.tmp.sam_
831s .. ok
831s 
831s test_view testing xx#large_aux2.sam, ref xx.fa:
831s   ./test_view  -S -l0 -b xx#large_aux2.sam > xx#large_aux2.tmp.bam
831s   ./test_view  xx#large_aux2.tmp.bam > xx#large_aux2.tmp.bam.sam_
831s   ./compare_sam.pl xx#large_aux2.sam xx#large_aux2.tmp.bam.sam_
831s   ./test_view  -t xx.fa -S -C -o VERSION=2.1 xx#large_aux2.sam > xx#large_aux2.tmp.cram
831s   ./test_view  -D xx#large_aux2.tmp.cram > xx#large_aux2.tmp.cram.sam_
831s   ./compare_sam.pl -nomd xx#large_aux2.sam xx#large_aux2.tmp.cram.sam_
831s   ./test_view  -t xx.fa -C -o VERSION=3.0 xx#large_aux2.tmp.bam > xx#large_aux2.tmp.bam.cram
831s   ./test_view  xx#large_aux2.tmp.bam.cram > xx#large_aux2.tmp.bam.cram.bam.sam_
831s   ./compare_sam.pl -nomd xx#large_aux2.sam xx#large_aux2.tmp.bam.cram.bam.sam_
831s .. ok
831s 
831s test_view testing xx#MD.sam, ref xx.fa:
831s   ./test_view  -S -l0 -b xx#MD.sam > xx#MD.tmp.bam
831s   ./test_view  xx#MD.tmp.bam > xx#MD.tmp.bam.sam_
831s   ./compare_sam.pl xx#MD.sam xx#MD.tmp.bam.sam_
831s   ./test_view  -t xx.fa -S -C -o VERSION=2.1 xx#MD.sam > xx#MD.tmp.cram
831s   ./test_view  -D xx#MD.tmp.cram > xx#MD.tmp.cram.sam_
831s   ./compare_sam.pl -nomd xx#MD.sam xx#MD.tmp.cram.sam_
831s   ./test_view  -t xx.fa -C -o VERSION=3.0 xx#MD.tmp.bam > xx#MD.tmp.bam.cram
831s   ./test_view  xx#MD.tmp.bam.cram > xx#MD.tmp.bam.cram.bam.sam_
831s   ./compare_sam.pl -nomd xx#MD.sam xx#MD.tmp.bam.cram.bam.sam_
831s .. ok
831s 
831s test_view testing xx#MD2.sam, ref xx.fa:
831s   ./test_view  -S -l0 -b xx#MD2.sam > xx#MD2.tmp.bam
832s   ./test_view  xx#MD2.tmp.bam > xx#MD2.tmp.bam.sam_
832s   ./compare_sam.pl xx#MD2.sam xx#MD2.tmp.bam.sam_
832s   ./test_view  -t xx.fa -S -C -o VERSION=2.1 xx#MD2.sam > xx#MD2.tmp.cram
832s   ./test_view  -D xx#MD2.tmp.cram > xx#MD2.tmp.cram.sam_
832s   ./compare_sam.pl -nomd xx#MD2.sam xx#MD2.tmp.cram.sam_
832s   ./test_view  -t xx.fa -C -o VERSION=3.0 xx#MD2.tmp.bam > xx#MD2.tmp.bam.cram
832s   ./test_view  xx#MD2.tmp.bam.cram > xx#MD2.tmp.bam.cram.bam.sam_
832s   ./compare_sam.pl -nomd xx#MD2.sam xx#MD2.tmp.bam.cram.bam.sam_
832s .. ok
832s 
832s test_view testing xx#minimal.sam, ref xx.fa:
832s   ./test_view  -S -l0 -b xx#minimal.sam > xx#minimal.tmp.bam
832s   ./test_view  xx#minimal.tmp.bam > xx#minimal.tmp.bam.sam_
832s   ./compare_sam.pl xx#minimal.sam xx#minimal.tmp.bam.sam_
832s   ./test_view  -t xx.fa -S -C -o VERSION=2.1 xx#minimal.sam > xx#minimal.tmp.cram
832s   ./test_view  -D xx#minimal.tmp.cram > xx#minimal.tmp.cram.sam_
832s   ./compare_sam.pl -nomd xx#minimal.sam xx#minimal.tmp.cram.sam_
832s   ./test_view  -t xx.fa -C -o VERSION=3.0 xx#minimal.tmp.bam > xx#minimal.tmp.bam.cram
832s   ./test_view  xx#minimal.tmp.bam.cram > xx#minimal.tmp.bam.cram.bam.sam_
832s   ./compare_sam.pl -nomd xx#minimal.sam xx#minimal.tmp.bam.cram.bam.sam_
832s .. ok
832s 
832s test_view testing xx#pair.sam, ref xx.fa:
832s   ./test_view  -S -l0 -b xx#pair.sam > xx#pair.tmp.bam
832s   ./test_view  xx#pair.tmp.bam > xx#pair.tmp.bam.sam_
832s   ./compare_sam.pl xx#pair.sam xx#pair.tmp.bam.sam_
832s   ./test_view  -t xx.fa -S -C -o VERSION=2.1 xx#pair.sam > xx#pair.tmp.cram
832s   ./test_view  -D xx#pair.tmp.cram > xx#pair.tmp.cram.sam_
832s   ./compare_sam.pl -nomd xx#pair.sam xx#pair.tmp.cram.sam_
832s   ./test_view  -t xx.fa -C -o VERSION=3.0 xx#pair.tmp.bam > xx#pair.tmp.bam.cram
832s   ./test_view  xx#pair.tmp.bam.cram > xx#pair.tmp.bam.cram.bam.sam_
832s   ./compare_sam.pl -nomd xx#pair.sam xx#pair.tmp.bam.cram.bam.sam_
832s .. ok
832s 
832s test_view testing xx#repeated.sam, ref xx.fa:
832s   ./test_view  -S -l0 -b xx#repeated.sam > xx#repeated.tmp.bam
832s   ./test_view  xx#repeated.tmp.bam > xx#repeated.tmp.bam.sam_
832s   ./compare_sam.pl xx#repeated.sam xx#repeated.tmp.bam.sam_
832s   ./test_view  -t xx.fa -S -C -o VERSION=2.1 xx#repeated.sam > xx#repeated.tmp.cram
832s   ./test_view  -D xx#repeated.tmp.cram > xx#repeated.tmp.cram.sam_
832s   ./compare_sam.pl -nomd xx#repeated.sam xx#repeated.tmp.cram.sam_
832s   ./test_view  -t xx.fa -C -o VERSION=3.0 xx#repeated.tmp.bam > xx#repeated.tmp.bam.cram
832s   ./test_view  xx#repeated.tmp.bam.cram > xx#repeated.tmp.bam.cram.bam.sam_
832s   ./compare_sam.pl -nomd xx#repeated.sam xx#repeated.tmp.bam.cram.bam.sam_
832s .. ok
832s 
832s test_view testing xx#rg.sam, ref xx.fa:
832s   ./test_view  -S -l0 -b xx#rg.sam > xx#rg.tmp.bam
832s   ./test_view  xx#rg.tmp.bam > xx#rg.tmp.bam.sam_
832s   ./compare_sam.pl xx#rg.sam xx#rg.tmp.bam.sam_
832s   ./test_view  -t xx.fa -S -C -o VERSION=2.1 xx#rg.sam > xx#rg.tmp.cram
832s   ./test_view  -D xx#rg.tmp.cram > xx#rg.tmp.cram.sam_
832s   ./compare_sam.pl -nomd xx#rg.sam xx#rg.tmp.cram.sam_
832s   ./test_view  -t xx.fa -C -o VERSION=3.0 xx#rg.tmp.bam > xx#rg.tmp.bam.cram
832s   ./test_view  xx#rg.tmp.bam.cram > xx#rg.tmp.bam.cram.bam.sam_
832s   ./compare_sam.pl -nomd xx#rg.sam xx#rg.tmp.bam.cram.bam.sam_
832s .. ok
832s 
832s test_view testing xx#tlen.sam, ref xx.fa:
832s   ./test_view  -S -l0 -b xx#tlen.sam > xx#tlen.tmp.bam
832s   ./test_view  xx#tlen.tmp.bam > xx#tlen.tmp.bam.sam_
832s   ./compare_sam.pl xx#tlen.sam xx#tlen.tmp.bam.sam_
832s   ./test_view  -t xx.fa -S -C -o VERSION=2.1 xx#tlen.sam > xx#tlen.tmp.cram
832s   ./test_view  -D xx#tlen.tmp.cram > xx#tlen.tmp.cram.sam_
832s   ./compare_sam.pl -nomd xx#tlen.sam xx#tlen.tmp.cram.sam_
832s   ./test_view  -t xx.fa -C -o VERSION=3.0 xx#tlen.tmp.bam > xx#tlen.tmp.bam.cram
832s   ./test_view  xx#tlen.tmp.bam.cram > xx#tlen.tmp.bam.cram.bam.sam_
832s   ./compare_sam.pl -nomd xx#tlen.sam xx#tlen.tmp.bam.cram.bam.sam_
832s .. ok
832s 
832s test_view testing xx#tlen2.sam, ref xx.fa:
832s   ./test_view  -S -l0 -b xx#tlen2.sam > xx#tlen2.tmp.bam
832s   ./test_view  xx#tlen2.tmp.bam > xx#tlen2.tmp.bam.sam_
832s   ./compare_sam.pl xx#tlen2.sam xx#tlen2.tmp.bam.sam_
832s   ./test_view  -t xx.fa -S -C -o VERSION=2.1 xx#tlen2.sam > xx#tlen2.tmp.cram
832s   ./test_view  -D xx#tlen2.tmp.cram > xx#tlen2.tmp.cram.sam_
832s   ./compare_sam.pl -nomd xx#tlen2.sam xx#tlen2.tmp.cram.sam_
832s   ./test_view  -t xx.fa -C -o VERSION=3.0 xx#tlen2.tmp.bam > xx#tlen2.tmp.bam.cram
832s   ./test_view  xx#tlen2.tmp.bam.cram > xx#tlen2.tmp.bam.cram.bam.sam_
832s   ./compare_sam.pl -nomd xx#tlen2.sam xx#tlen2.tmp.bam.cram.bam.sam_
832s .. ok
832s 
832s test_view testing xx#triplet.sam, ref xx.fa:
832s   ./test_view  -S -l0 -b xx#triplet.sam > xx#triplet.tmp.bam
832s   ./test_view  xx#triplet.tmp.bam > xx#triplet.tmp.bam.sam_
832s   ./compare_sam.pl xx#triplet.sam xx#triplet.tmp.bam.sam_
832s   ./test_view  -t xx.fa -S -C -o VERSION=2.1 xx#triplet.sam > xx#triplet.tmp.cram
832s   ./test_view  -D xx#triplet.tmp.cram > xx#triplet.tmp.cram.sam_
832s   ./compare_sam.pl -nomd xx#triplet.sam xx#triplet.tmp.cram.sam_
832s   ./test_view  -t xx.fa -C -o VERSION=3.0 xx#triplet.tmp.bam > xx#triplet.tmp.bam.cram
832s   ./test_view  xx#triplet.tmp.bam.cram > xx#triplet.tmp.bam.cram.bam.sam_
832s   ./compare_sam.pl -nomd xx#triplet.sam xx#triplet.tmp.bam.cram.bam.sam_
832s .. ok
832s 
832s test_view testing xx#unsorted.sam, ref xx.fa:
832s   ./test_view  -S -l0 -b xx#unsorted.sam > xx#unsorted.tmp.bam
832s   ./test_view  xx#unsorted.tmp.bam > xx#unsorted.tmp.bam.sam_
832s   ./compare_sam.pl xx#unsorted.sam xx#unsorted.tmp.bam.sam_
832s   ./test_view  -t xx.fa -S -C -o VERSION=2.1 xx#unsorted.sam > xx#unsorted.tmp.cram
832s   ./test_view  -D xx#unsorted.tmp.cram > xx#unsorted.tmp.cram.sam_
832s   ./compare_sam.pl -nomd xx#unsorted.sam xx#unsorted.tmp.cram.sam_
832s   ./test_view  -t xx.fa -C -o VERSION=3.0 xx#unsorted.tmp.bam > xx#unsorted.tmp.bam.cram
832s   ./test_view  xx#unsorted.tmp.bam.cram > xx#unsorted.tmp.bam.cram.bam.sam_
832s   ./compare_sam.pl -nomd xx#unsorted.sam xx#unsorted.tmp.bam.cram.bam.sam_
832s .. ok
832s 
832s test_view testing embed_ref=2:
832s   ./test_view  -C -p ce#1000_er.tmp.cram ce#1000.sam
832s [W::cram_get_ref] Failed to populate reference for id 0
832s [W::cram_write_SAM_hdr] No M5 tags present and could not find reference
832s [W::cram_write_SAM_hdr] Enabling embed_ref=2 option
832s [W::cram_write_SAM_hdr] NOTE: the CRAM file will be bigger than using an external reference
832s   ./test_view  -p ce#1000_er.tmp.cram.sam ce#1000_er.tmp.cram
832s   ./compare_sam.pl ce#1000.sam ce#1000_er.tmp.cram.sam
832s .. ok
832s 
832s test_view testing region queries:
832s   ./test_view  -i reference=ce.fa range.cram CHROMOSOME_II:2980-2980 CHROMOSOME_IV:1500-1500 CHROMOSOME_II:2980-2980 CHROMOSOME_I:1000-1100 > range.tmp
832s   ./compare_sam.pl range.tmp range.out
833s   ./test_view  range.bam CHROMOSOME_II:2980-2980 CHROMOSOME_IV:1500-1500 CHROMOSOME_II:2980-2980 CHROMOSOME_I:1000-1100 > range.tmp
833s   ./compare_sam.pl range.tmp range.out
833s .. ok
833s 
833s test_view testing BAM files with absent @SQ lines:
833s   ./test_view  -p no_hdr_sq_1.tmp.sam no_hdr_sq_1.bam
833s   ./compare_sam.pl no_hdr_sq_1.tmp.sam no_hdr_sq_1.expected.sam
833s   ./test_view  -p no_hdr_sq_1.chr1.tmp.sam no_hdr_sq_1.bam CHROMOSOME_I
833s   ./compare_sam.pl no_hdr_sq_1.chr1.tmp.sam no_hdr_sq_1.expected.sam
833s .. ok
833s 
833s test_view testing large (> 2Gbases) positions:
833s   ./test_view  -z -p longrefs/longref.tmp.sam.gz -x longrefs/longref.tmp.sam.gz.csi.otf -m 14 longrefs/longref.sam
833s   ./test_view  -p longrefs/longref.tmp.sam_ longrefs/longref.tmp.sam.gz
833s   ./compare_sam.pl longrefs/longref.sam longrefs/longref.tmp.sam_
833s test_view:
833s 	/tmp/autopkgtest.VLO3fa/autopkgtest_tmp/test/test_index -c longrefs/longref.tmp.sam.gz
833s .. ok
833s 
833s   ./test_view  -p longrefs/longref_itr.tmp.sam longrefs/longref.tmp.sam.gz CHROMOSOME_I:10000000000-10000000003
833s   ./compare_sam.pl longrefs/longref_itr.expected.sam longrefs/longref_itr.tmp.sam
833s   ./test_view  -M -p longrefs/longref_multi.tmp.sam longrefs/longref.tmp.sam.gz CHROMOSOME_I:10000000000-10000000003 CHROMOSOME_I:10000000100-10000000110
833s   ./compare_sam.pl longrefs/longref_multi.expected.sam longrefs/longref_multi.tmp.sam
833s .. ok
833s 
833s test_view testing auxf#values.sam, ref auxf.fa:
833s   ./test_view -@4 -S -l0 -b auxf#values.sam > auxf#values.tmp.bam
833s   ./test_view -@4 auxf#values.tmp.bam > auxf#values.tmp.bam.sam_
833s   ./compare_sam.pl auxf#values.sam auxf#values.tmp.bam.sam_
833s   ./test_view -@4 -t auxf.fa -S -C -o VERSION=2.1 auxf#values.sam > auxf#values.tmp.cram
833s   ./test_view -@4 -D auxf#values.tmp.cram > auxf#values.tmp.cram.sam_
833s   ./compare_sam.pl -nomd auxf#values.sam auxf#values.tmp.cram.sam_
833s   ./test_view -@4 -t auxf.fa -C -o VERSION=3.0 auxf#values.tmp.bam > auxf#values.tmp.bam.cram
833s   ./test_view -@4 auxf#values.tmp.bam.cram > auxf#values.tmp.bam.cram.bam.sam_
833s   ./compare_sam.pl -nomd auxf#values.sam auxf#values.tmp.bam.cram.bam.sam_
833s   ./test_view -@4 -t auxf.fa -S -l7 -C -o VERSION=3.1 -o archive auxf#values.sam > auxf#values.tmp.cram
833s   ./test_view -@4 -D auxf#values.tmp.cram > auxf#values.tmp.cram.sam_
833s   ./compare_sam.pl -nomd auxf#values.sam auxf#values.tmp.cram.sam_
833s   ./test_view -@4 -t auxf.fa -S -l7 -C -o VERSION=4.0 -o archive auxf#values.sam > auxf#values.tmp.cram
833s [W::cram_set_voption] CRAM version 4.0 is still a draft and subject to change.
833s This is a technology demonstration that should not be used for archival data.
833s   ./test_view -@4 -D auxf#values.tmp.cram > auxf#values.tmp.cram.sam_
833s   ./compare_sam.pl -nomd auxf#values.sam auxf#values.tmp.cram.sam_
833s   ./test_view -@4 -i reference=auxf.fa auxf#values_java.cram > auxf#values_java.tmp.sam_
833s   ./compare_sam.pl -Baux -nomd auxf#values.sam auxf#values_java.tmp.sam_
833s .. ok
833s 
833s test_view testing c1#bounds.sam, ref c1.fa:
833s   ./test_view -@4 -S -l0 -b c1#bounds.sam > c1#bounds.tmp.bam
833s   ./test_view -@4 c1#bounds.tmp.bam > c1#bounds.tmp.bam.sam_
833s   ./compare_sam.pl c1#bounds.sam c1#bounds.tmp.bam.sam_
833s   ./test_view -@4 -t c1.fa -S -C -o VERSION=2.1 c1#bounds.sam > c1#bounds.tmp.cram
833s   ./test_view -@4 -D c1#bounds.tmp.cram > c1#bounds.tmp.cram.sam_
833s   ./compare_sam.pl -nomd c1#bounds.sam c1#bounds.tmp.cram.sam_
833s   ./test_view -@4 -t c1.fa -C -o VERSION=3.0 c1#bounds.tmp.bam > c1#bounds.tmp.bam.cram
833s   ./test_view -@4 c1#bounds.tmp.bam.cram > c1#bounds.tmp.bam.cram.bam.sam_
833s   ./compare_sam.pl -nomd c1#bounds.sam c1#bounds.tmp.bam.cram.bam.sam_
833s .. ok
833s 
833s test_view testing c1#clip.sam, ref c1.fa:
833s   ./test_view -@4 -S -l0 -b c1#clip.sam > c1#clip.tmp.bam
833s   ./test_view -@4 c1#clip.tmp.bam > c1#clip.tmp.bam.sam_
833s   ./compare_sam.pl c1#clip.sam c1#clip.tmp.bam.sam_
833s   ./test_view -@4 -t c1.fa -S -C -o VERSION=2.1 c1#clip.sam > c1#clip.tmp.cram
833s   ./test_view -@4 -D c1#clip.tmp.cram > c1#clip.tmp.cram.sam_
833s   ./compare_sam.pl -nomd c1#clip.sam c1#clip.tmp.cram.sam_
833s   ./test_view -@4 -t c1.fa -C -o VERSION=3.0 c1#clip.tmp.bam > c1#clip.tmp.bam.cram
833s   ./test_view -@4 c1#clip.tmp.bam.cram > c1#clip.tmp.bam.cram.bam.sam_
833s   ./compare_sam.pl -nomd c1#clip.sam c1#clip.tmp.bam.cram.bam.sam_
833s .. ok
833s 
833s test_view testing c1#noseq.sam, ref c1.fa:
833s   ./test_view -@4 -S -l0 -b c1#noseq.sam > c1#noseq.tmp.bam
833s   ./test_view -@4 c1#noseq.tmp.bam > c1#noseq.tmp.bam.sam_
834s   ./compare_sam.pl c1#noseq.sam c1#noseq.tmp.bam.sam_
834s   ./test_view -@4 -t c1.fa -S -C -o VERSION=2.1 c1#noseq.sam > c1#noseq.tmp.cram
834s   ./test_view -@4 -D c1#noseq.tmp.cram > c1#noseq.tmp.cram.sam_
834s   ./compare_sam.pl -nomd c1#noseq.sam c1#noseq.tmp.cram.sam_
834s   ./test_view -@4 -t c1.fa -C -o VERSION=3.0 c1#noseq.tmp.bam > c1#noseq.tmp.bam.cram
834s   ./test_view -@4 c1#noseq.tmp.bam.cram > c1#noseq.tmp.bam.cram.bam.sam_
834s   ./compare_sam.pl -nomd c1#noseq.sam c1#noseq.tmp.bam.cram.bam.sam_
834s .. ok
834s 
834s test_view testing c1#pad1.sam, ref c1.fa:
834s   ./test_view -@4 -S -l0 -b c1#pad1.sam > c1#pad1.tmp.bam
834s   ./test_view -@4 c1#pad1.tmp.bam > c1#pad1.tmp.bam.sam_
834s   ./compare_sam.pl c1#pad1.sam c1#pad1.tmp.bam.sam_
834s   ./test_view -@4 -t c1.fa -S -C -o VERSION=2.1 c1#pad1.sam > c1#pad1.tmp.cram
834s   ./test_view -@4 -D c1#pad1.tmp.cram > c1#pad1.tmp.cram.sam_
834s   ./compare_sam.pl -nomd c1#pad1.sam c1#pad1.tmp.cram.sam_
834s   ./test_view -@4 -t c1.fa -C -o VERSION=3.0 c1#pad1.tmp.bam > c1#pad1.tmp.bam.cram
834s   ./test_view -@4 c1#pad1.tmp.bam.cram > c1#pad1.tmp.bam.cram.bam.sam_
834s   ./compare_sam.pl -nomd c1#pad1.sam c1#pad1.tmp.bam.cram.bam.sam_
834s .. ok
834s 
834s test_view testing c1#pad2.sam, ref c1.fa:
834s   ./test_view -@4 -S -l0 -b c1#pad2.sam > c1#pad2.tmp.bam
834s   ./test_view -@4 c1#pad2.tmp.bam > c1#pad2.tmp.bam.sam_
834s   ./compare_sam.pl c1#pad2.sam c1#pad2.tmp.bam.sam_
834s   ./test_view -@4 -t c1.fa -S -C -o VERSION=2.1 c1#pad2.sam > c1#pad2.tmp.cram
834s   ./test_view -@4 -D c1#pad2.tmp.cram > c1#pad2.tmp.cram.sam_
834s   ./compare_sam.pl -nomd c1#pad2.sam c1#pad2.tmp.cram.sam_
834s   ./test_view -@4 -t c1.fa -C -o VERSION=3.0 c1#pad2.tmp.bam > c1#pad2.tmp.bam.cram
834s   ./test_view -@4 c1#pad2.tmp.bam.cram > c1#pad2.tmp.bam.cram.bam.sam_
834s   ./compare_sam.pl -nomd c1#pad2.sam c1#pad2.tmp.bam.cram.bam.sam_
834s .. ok
834s 
834s test_view testing c1#pad3.sam, ref c1.fa:
834s   ./test_view -@4 -S -l0 -b c1#pad3.sam > c1#pad3.tmp.bam
834s   ./test_view -@4 c1#pad3.tmp.bam > c1#pad3.tmp.bam.sam_
834s   ./compare_sam.pl c1#pad3.sam c1#pad3.tmp.bam.sam_
834s   ./test_view -@4 -t c1.fa -S -C -o VERSION=2.1 c1#pad3.sam > c1#pad3.tmp.cram
834s   ./test_view -@4 -D c1#pad3.tmp.cram > c1#pad3.tmp.cram.sam_
834s   ./compare_sam.pl -nomd c1#pad3.sam c1#pad3.tmp.cram.sam_
834s   ./test_view -@4 -t c1.fa -C -o VERSION=3.0 c1#pad3.tmp.bam > c1#pad3.tmp.bam.cram
834s   ./test_view -@4 c1#pad3.tmp.bam.cram > c1#pad3.tmp.bam.cram.bam.sam_
834s   ./compare_sam.pl -nomd c1#pad3.sam c1#pad3.tmp.bam.cram.bam.sam_
834s   ./test_view -@4 -t c1.fa -S -l7 -C -o VERSION=3.1 -o archive c1#pad3.sam > c1#pad3.tmp.cram
834s   ./test_view -@4 -D c1#pad3.tmp.cram > c1#pad3.tmp.cram.sam_
834s   ./compare_sam.pl -nomd c1#pad3.sam c1#pad3.tmp.cram.sam_
834s   ./test_view -@4 -t c1.fa -S -l7 -C -o VERSION=4.0 -o archive c1#pad3.sam > c1#pad3.tmp.cram
834s [W::cram_set_voption] CRAM version 4.0 is still a draft and subject to change.
834s This is a technology demonstration that should not be used for archival data.
834s   ./test_view -@4 -D c1#pad3.tmp.cram > c1#pad3.tmp.cram.sam_
834s   ./compare_sam.pl -nomd c1#pad3.sam c1#pad3.tmp.cram.sam_
834s .. ok
834s 
834s test_view testing c1#unknown.sam, ref c1.fa:
834s   ./test_view -@4 -S -l0 -b c1#unknown.sam > c1#unknown.tmp.bam
834s   ./test_view -@4 c1#unknown.tmp.bam > c1#unknown.tmp.bam.sam_
834s   ./compare_sam.pl c1#unknown.sam c1#unknown.tmp.bam.sam_
834s   ./test_view -@4 -t c1.fa -S -C -o VERSION=2.1 c1#unknown.sam > c1#unknown.tmp.cram
834s   ./test_view -@4 -D c1#unknown.tmp.cram > c1#unknown.tmp.cram.sam_
835s   ./compare_sam.pl -nomd c1#unknown.sam c1#unknown.tmp.cram.sam_
835s   ./test_view -@4 -t c1.fa -C -o VERSION=3.0 c1#unknown.tmp.bam > c1#unknown.tmp.bam.cram
835s   ./test_view -@4 c1#unknown.tmp.bam.cram > c1#unknown.tmp.bam.cram.bam.sam_
835s   ./compare_sam.pl -nomd c1#unknown.sam c1#unknown.tmp.bam.cram.bam.sam_
835s .. ok
835s 
835s test_view testing c2#pad.sam, ref c2.fa:
835s   ./test_view -@4 -S -l0 -b c2#pad.sam > c2#pad.tmp.bam
835s   ./test_view -@4 c2#pad.tmp.bam > c2#pad.tmp.bam.sam_
835s   ./compare_sam.pl c2#pad.sam c2#pad.tmp.bam.sam_
835s   ./test_view -@4 -t c2.fa -S -C -o VERSION=2.1 c2#pad.sam > c2#pad.tmp.cram
835s   ./test_view -@4 -D c2#pad.tmp.cram > c2#pad.tmp.cram.sam_
835s   ./compare_sam.pl -nomd c2#pad.sam c2#pad.tmp.cram.sam_
835s   ./test_view -@4 -t c2.fa -C -o VERSION=3.0 c2#pad.tmp.bam > c2#pad.tmp.bam.cram
835s   ./test_view -@4 c2#pad.tmp.bam.cram > c2#pad.tmp.bam.cram.bam.sam_
835s   ./compare_sam.pl -nomd c2#pad.sam c2#pad.tmp.bam.cram.bam.sam_
835s .. ok
835s 
835s test_view testing ce#1.sam, ref ce.fa:
835s   ./test_view -@4 -S -l0 -b ce#1.sam > ce#1.tmp.bam
835s   ./test_view -@4 ce#1.tmp.bam > ce#1.tmp.bam.sam_
835s   ./compare_sam.pl ce#1.sam ce#1.tmp.bam.sam_
835s   ./test_view -@4 -t ce.fa -S -C -o VERSION=2.1 ce#1.sam > ce#1.tmp.cram
835s   ./test_view -@4 -D ce#1.tmp.cram > ce#1.tmp.cram.sam_
835s   ./compare_sam.pl -nomd ce#1.sam ce#1.tmp.cram.sam_
835s   ./test_view -@4 -t ce.fa -C -o VERSION=3.0 ce#1.tmp.bam > ce#1.tmp.bam.cram
835s   ./test_view -@4 ce#1.tmp.bam.cram > ce#1.tmp.bam.cram.bam.sam_
835s   ./compare_sam.pl -nomd ce#1.sam ce#1.tmp.bam.cram.bam.sam_
835s .. ok
835s 
835s test_view testing ce#1000.sam, ref ce.fa:
835s   ./test_view -@4 -S -b ce#1000.sam > ce#1000.tmp.bam
835s   ./test_view -@4 ce#1000.tmp.bam > ce#1000.tmp.bam.sam_
835s   ./compare_sam.pl ce#1000.sam ce#1000.tmp.bam.sam_
835s   ./test_view -@4 -S -l0 -b ce#1000.sam > ce#1000.tmp.bam
835s   ./test_view -@4 ce#1000.tmp.bam > ce#1000.tmp.bam.sam_
835s   ./compare_sam.pl ce#1000.sam ce#1000.tmp.bam.sam_
835s   ./test_view -@4 -t ce.fa -S -C -o VERSION=2.1 ce#1000.sam > ce#1000.tmp.cram
835s   ./test_view -@4 -D ce#1000.tmp.cram > ce#1000.tmp.cram.sam_
835s   ./compare_sam.pl -nomd ce#1000.sam ce#1000.tmp.cram.sam_
835s   ./test_view -@4 -t ce.fa -S -l0 -C -o VERSION=3.0 ce#1000.sam > ce#1000.tmp.cram
835s   ./test_view -@4 -D ce#1000.tmp.cram > ce#1000.tmp.cram.sam_
835s   ./compare_sam.pl -nomd ce#1000.sam ce#1000.tmp.cram.sam_
835s   ./test_view -@4 -t ce.fa -C -o VERSION=3.0 ce#1000.tmp.bam > ce#1000.tmp.bam.cram
835s   ./test_view -@4 ce#1000.tmp.bam.cram > ce#1000.tmp.bam.cram.bam.sam_
835s   ./compare_sam.pl -nomd ce#1000.sam ce#1000.tmp.bam.cram.bam.sam_
835s   ./test_view -@4 -t ce.fa -C -o VERSION=3.0 -o seqs_per_slice=7 -o slices_per_container=5 ce#1000.tmp.bam.cram > ce#1000.tmp.bam.cram.ms
835s   ./test_view -@4 ce#1000.tmp.bam.cram.ms > ce#1000.tmp.bam.cram.sam_
836s   ./compare_sam.pl -nomd ce#1000.sam ce#1000.tmp.bam.cram.sam_
836s   ./test_view -@4 -t ce.fa -S -l7 -C -o VERSION=3.1 -o fast ce#1000.sam > ce#1000.tmp.cram
836s   ./test_view -@4 -D ce#1000.tmp.cram > ce#1000.tmp.cram.sam_
836s   ./compare_sam.pl -nomd ce#1000.sam ce#1000.tmp.cram.sam_
836s   ./test_view -@4 -t ce.fa -S -l7 -C -o VERSION=3.1 -o normal ce#1000.sam > ce#1000.tmp.cram
836s   ./test_view -@4 -D ce#1000.tmp.cram > ce#1000.tmp.cram.sam_
836s   ./compare_sam.pl -nomd ce#1000.sam ce#1000.tmp.cram.sam_
836s   ./test_view -@4 -t ce.fa -S -l7 -C -o VERSION=3.1 -o small ce#1000.sam > ce#1000.tmp.cram
836s   ./test_view -@4 -D ce#1000.tmp.cram > ce#1000.tmp.cram.sam_
836s   ./compare_sam.pl -nomd ce#1000.sam ce#1000.tmp.cram.sam_
836s   ./test_view -@4 -t ce.fa -S -l7 -C -o VERSION=3.1 -o archive ce#1000.sam > ce#1000.tmp.cram
836s   ./test_view -@4 -D ce#1000.tmp.cram > ce#1000.tmp.cram.sam_
836s   ./compare_sam.pl -nomd ce#1000.sam ce#1000.tmp.cram.sam_
836s   ./test_view -@4 -t ce.fa -S -l7 -C -o VERSION=4.0 -o archive ce#1000.sam > ce#1000.tmp.cram
836s [W::cram_set_voption] CRAM version 4.0 is still a draft and subject to change.
836s This is a technology demonstration that should not be used for archival data.
836s   ./test_view -@4 -D ce#1000.tmp.cram > ce#1000.tmp.cram.sam_
836s   ./compare_sam.pl -nomd ce#1000.sam ce#1000.tmp.cram.sam_
836s .. ok
836s 
836s test_view testing ce#1000_er.tmp.cram.sam, ref ce.fa:
836s   ./test_view -@4 -S -l0 -b ce#1000_er.tmp.cram.sam > ce#1000_er.tmp.cram.tmp.bam
836s   ./test_view -@4 ce#1000_er.tmp.cram.tmp.bam > ce#1000_er.tmp.cram.tmp.bam.sam_
836s   ./compare_sam.pl ce#1000_er.tmp.cram.sam ce#1000_er.tmp.cram.tmp.bam.sam_
836s   ./test_view -@4 -t ce.fa -S -C -o VERSION=2.1 ce#1000_er.tmp.cram.sam > ce#1000_er.tmp.cram.tmp.cram
836s   ./test_view -@4 -D ce#1000_er.tmp.cram.tmp.cram > ce#1000_er.tmp.cram.tmp.cram.sam_
837s   ./compare_sam.pl -nomd ce#1000_er.tmp.cram.sam ce#1000_er.tmp.cram.tmp.cram.sam_
837s   ./test_view -@4 -t ce.fa -C -o VERSION=3.0 ce#1000_er.tmp.cram.tmp.bam > ce#1000_er.tmp.cram.tmp.bam.cram
837s   ./test_view -@4 ce#1000_er.tmp.cram.tmp.bam.cram > ce#1000_er.tmp.cram.tmp.bam.cram.bam.sam_
837s   ./compare_sam.pl -nomd ce#1000_er.tmp.cram.sam ce#1000_er.tmp.cram.tmp.bam.cram.bam.sam_
837s .. ok
837s 
837s test_view testing ce#2.sam, ref ce.fa:
837s   ./test_view -@4 -S -l0 -b ce#2.sam > ce#2.tmp.bam
837s   ./test_view -@4 ce#2.tmp.bam > ce#2.tmp.bam.sam_
837s   ./compare_sam.pl ce#2.sam ce#2.tmp.bam.sam_
837s   ./test_view -@4 -t ce.fa -S -C -o VERSION=2.1 ce#2.sam > ce#2.tmp.cram
837s   ./test_view -@4 -D ce#2.tmp.cram > ce#2.tmp.cram.sam_
837s   ./compare_sam.pl -nomd ce#2.sam ce#2.tmp.cram.sam_
837s   ./test_view -@4 -t ce.fa -C -o VERSION=3.0 ce#2.tmp.bam > ce#2.tmp.bam.cram
837s   ./test_view -@4 ce#2.tmp.bam.cram > ce#2.tmp.bam.cram.bam.sam_
837s   ./compare_sam.pl -nomd ce#2.sam ce#2.tmp.bam.cram.bam.sam_
837s .. ok
837s 
837s test_view testing ce#5.sam, ref ce.fa:
837s   ./test_view -@4 -S -l0 -b ce#5.sam > ce#5.tmp.bam
837s   ./test_view -@4 ce#5.tmp.bam > ce#5.tmp.bam.sam_
837s   ./compare_sam.pl ce#5.sam ce#5.tmp.bam.sam_
837s   ./test_view -@4 -t ce.fa -S -C -o VERSION=2.1 ce#5.sam > ce#5.tmp.cram
837s   ./test_view -@4 -D ce#5.tmp.cram > ce#5.tmp.cram.sam_
837s   ./compare_sam.pl -nomd ce#5.sam ce#5.tmp.cram.sam_
837s   ./test_view -@4 -t ce.fa -C -o VERSION=3.0 ce#5.tmp.bam > ce#5.tmp.bam.cram
837s   ./test_view -@4 ce#5.tmp.bam.cram > ce#5.tmp.bam.cram.bam.sam_
837s   ./compare_sam.pl -nomd ce#5.sam ce#5.tmp.bam.cram.bam.sam_
837s   ./test_view -@4 -t ce.fa -C -o VERSION=3.0 -o seqs_per_slice=7 -o slices_per_container=5 ce#5.tmp.bam.cram > ce#5.tmp.bam.cram.ms
837s   ./test_view -@4 ce#5.tmp.bam.cram.ms > ce#5.tmp.bam.cram.sam_
837s   ./compare_sam.pl -nomd ce#5.sam ce#5.tmp.bam.cram.sam_
837s   ./test_view -@4 -t ce.fa -S -l7 -C -o VERSION=3.1 -o archive ce#5.sam > ce#5.tmp.cram
837s   ./test_view -@4 -D ce#5.tmp.cram > ce#5.tmp.cram.sam_
837s   ./compare_sam.pl -nomd ce#5.sam ce#5.tmp.cram.sam_
837s   ./test_view -@4 -t ce.fa -S -l7 -C -o VERSION=4.0 -o archive ce#5.sam > ce#5.tmp.cram
837s [W::cram_set_voption] CRAM version 4.0 is still a draft and subject to change.
837s This is a technology demonstration that should not be used for archival data.
837s   ./test_view -@4 -D ce#5.tmp.cram > ce#5.tmp.cram.sam_
837s   ./compare_sam.pl -nomd ce#5.sam ce#5.tmp.cram.sam_
837s .. ok
837s 
837s test_view testing ce#5b.sam, ref ce.fa:
837s   ./test_view -@4 -S -l0 -b ce#5b.sam > ce#5b.tmp.bam
837s   ./test_view -@4 ce#5b.tmp.bam > ce#5b.tmp.bam.sam_
837s   ./compare_sam.pl ce#5b.sam ce#5b.tmp.bam.sam_
837s   ./test_view -@4 -t ce.fa -S -C -o VERSION=2.1 ce#5b.sam > ce#5b.tmp.cram
837s   ./test_view -@4 -D ce#5b.tmp.cram > ce#5b.tmp.cram.sam_
837s   ./compare_sam.pl -nomd ce#5b.sam ce#5b.tmp.cram.sam_
837s   ./test_view -@4 -t ce.fa -C -o VERSION=3.0 ce#5b.tmp.bam > ce#5b.tmp.bam.cram
837s   ./test_view -@4 ce#5b.tmp.bam.cram > ce#5b.tmp.bam.cram.bam.sam_
838s   ./compare_sam.pl -nomd ce#5b.sam ce#5b.tmp.bam.cram.bam.sam_
838s   ./test_view -@4 -t ce.fa -C -o VERSION=3.0 -o seqs_per_slice=7 -o slices_per_container=5 ce#5b.tmp.bam.cram > ce#5b.tmp.bam.cram.ms
838s   ./test_view -@4 ce#5b.tmp.bam.cram.ms > ce#5b.tmp.bam.cram.sam_
838s   ./compare_sam.pl -nomd ce#5b.sam ce#5b.tmp.bam.cram.sam_
838s   ./test_view -@4 -i reference=ce.fa ce#5b_java.cram > ce#5b_java.tmp.sam_
838s   ./compare_sam.pl -Baux -nomd ce#5b.sam ce#5b_java.tmp.sam_
838s .. ok
838s 
838s test_view testing ce#large_seq.sam, ref ce.fa:
838s   ./test_view -@4 -S -l0 -b ce#large_seq.sam > ce#large_seq.tmp.bam
838s   ./test_view -@4 ce#large_seq.tmp.bam > ce#large_seq.tmp.bam.sam_
838s   ./compare_sam.pl ce#large_seq.sam ce#large_seq.tmp.bam.sam_
838s   ./test_view -@4 -t ce.fa -S -C -o VERSION=2.1 ce#large_seq.sam > ce#large_seq.tmp.cram
838s   ./test_view -@4 -D ce#large_seq.tmp.cram > ce#large_seq.tmp.cram.sam_
838s   ./compare_sam.pl -nomd ce#large_seq.sam ce#large_seq.tmp.cram.sam_
838s   ./test_view -@4 -t ce.fa -C -o VERSION=3.0 ce#large_seq.tmp.bam > ce#large_seq.tmp.bam.cram
838s   ./test_view -@4 ce#large_seq.tmp.bam.cram > ce#large_seq.tmp.bam.cram.bam.sam_
838s   ./compare_sam.pl -nomd ce#large_seq.sam ce#large_seq.tmp.bam.cram.bam.sam_
838s   ./test_view -@4 -t ce.fa -S -l7 -C -o VERSION=3.1 -o archive ce#large_seq.sam > ce#large_seq.tmp.cram
839s   ./test_view -@4 -D ce#large_seq.tmp.cram > ce#large_seq.tmp.cram.sam_
839s   ./compare_sam.pl -nomd ce#large_seq.sam ce#large_seq.tmp.cram.sam_
839s   ./test_view -@4 -t ce.fa -S -l7 -C -o VERSION=4.0 -o fast ce#large_seq.sam > ce#large_seq.tmp.cram
839s [W::cram_set_voption] CRAM version 4.0 is still a draft and subject to change.
839s This is a technology demonstration that should not be used for archival data.
839s   ./test_view -@4 -D ce#large_seq.tmp.cram > ce#large_seq.tmp.cram.sam_
839s   ./compare_sam.pl -nomd ce#large_seq.sam ce#large_seq.tmp.cram.sam_
839s   ./test_view -@4 -t ce.fa -S -l7 -C -o VERSION=4.0 -o normal ce#large_seq.sam > ce#large_seq.tmp.cram
839s [W::cram_set_voption] CRAM version 4.0 is still a draft and subject to change.
839s This is a technology demonstration that should not be used for archival data.
839s   ./test_view -@4 -D ce#large_seq.tmp.cram > ce#large_seq.tmp.cram.sam_
839s   ./compare_sam.pl -nomd ce#large_seq.sam ce#large_seq.tmp.cram.sam_
839s   ./test_view -@4 -t ce.fa -S -l7 -C -o VERSION=4.0 -o small ce#large_seq.sam > ce#large_seq.tmp.cram
839s [W::cram_set_voption] CRAM version 4.0 is still a draft and subject to change.
839s This is a technology demonstration that should not be used for archival data.
839s   ./test_view -@4 -D ce#large_seq.tmp.cram > ce#large_seq.tmp.cram.sam_
839s   ./compare_sam.pl -nomd ce#large_seq.sam ce#large_seq.tmp.cram.sam_
840s   ./test_view -@4 -t ce.fa -S -l7 -C -o VERSION=4.0 -o archive ce#large_seq.sam > ce#large_seq.tmp.cram
840s [W::cram_set_voption] CRAM version 4.0 is still a draft and subject to change.
840s This is a technology demonstration that should not be used for archival data.
840s   ./test_view -@4 -D ce#large_seq.tmp.cram > ce#large_seq.tmp.cram.sam_
840s   ./compare_sam.pl -nomd ce#large_seq.sam ce#large_seq.tmp.cram.sam_
840s .. ok
840s 
840s test_view testing ce#supp.sam, ref ce.fa:
840s   ./test_view -@4 -S -l0 -b ce#supp.sam > ce#supp.tmp.bam
840s   ./test_view -@4 ce#supp.tmp.bam > ce#supp.tmp.bam.sam_
840s   ./compare_sam.pl ce#supp.sam ce#supp.tmp.bam.sam_
840s   ./test_view -@4 -t ce.fa -S -C -o VERSION=2.1 ce#supp.sam > ce#supp.tmp.cram
840s   ./test_view -@4 -D ce#supp.tmp.cram > ce#supp.tmp.cram.sam_
840s   ./compare_sam.pl -nomd ce#supp.sam ce#supp.tmp.cram.sam_
840s   ./test_view -@4 -t ce.fa -C -o VERSION=3.0 ce#supp.tmp.bam > ce#supp.tmp.bam.cram
840s   ./test_view -@4 ce#supp.tmp.bam.cram > ce#supp.tmp.bam.cram.bam.sam_
840s   ./compare_sam.pl -nomd ce#supp.sam ce#supp.tmp.bam.cram.bam.sam_
840s   ./test_view -@4 -t ce.fa -S -l7 -C -o VERSION=3.1 -o archive ce#supp.sam > ce#supp.tmp.cram
840s   ./test_view -@4 -D ce#supp.tmp.cram > ce#supp.tmp.cram.sam_
840s   ./compare_sam.pl -nomd ce#supp.sam ce#supp.tmp.cram.sam_
840s   ./test_view -@4 -t ce.fa -S -l7 -C -o VERSION=4.0 -o archive ce#supp.sam > ce#supp.tmp.cram
840s [W::cram_set_voption] CRAM version 4.0 is still a draft and subject to change.
840s This is a technology demonstration that should not be used for archival data.
840s   ./test_view -@4 -D ce#supp.tmp.cram > ce#supp.tmp.cram.sam_
840s   ./compare_sam.pl -nomd ce#supp.sam ce#supp.tmp.cram.sam_
840s .. ok
840s 
840s test_view testing ce#tag_depadded.sam, ref ce.fa:
840s   ./test_view -@4 -S -l0 -b ce#tag_depadded.sam > ce#tag_depadded.tmp.bam
840s   ./test_view -@4 ce#tag_depadded.tmp.bam > ce#tag_depadded.tmp.bam.sam_
840s   ./compare_sam.pl ce#tag_depadded.sam ce#tag_depadded.tmp.bam.sam_
840s   ./test_view -@4 -t ce.fa -S -C -o VERSION=2.1 ce#tag_depadded.sam > ce#tag_depadded.tmp.cram
840s   ./test_view -@4 -D ce#tag_depadded.tmp.cram > ce#tag_depadded.tmp.cram.sam_
840s   ./compare_sam.pl -nomd ce#tag_depadded.sam ce#tag_depadded.tmp.cram.sam_
840s   ./test_view -@4 -t ce.fa -C -o VERSION=3.0 ce#tag_depadded.tmp.bam > ce#tag_depadded.tmp.bam.cram
840s   ./test_view -@4 ce#tag_depadded.tmp.bam.cram > ce#tag_depadded.tmp.bam.cram.bam.sam_
840s   ./compare_sam.pl -nomd ce#tag_depadded.sam ce#tag_depadded.tmp.bam.cram.bam.sam_
841s .. ok
841s 
841s test_view testing ce#tag_padded.sam, ref ce.fa:
841s   ./test_view -@4 -S -l0 -b ce#tag_padded.sam > ce#tag_padded.tmp.bam
841s   ./test_view -@4 ce#tag_padded.tmp.bam > ce#tag_padded.tmp.bam.sam_
841s   ./compare_sam.pl ce#tag_padded.sam ce#tag_padded.tmp.bam.sam_
841s   ./test_view -@4 -t ce.fa -S -C -o VERSION=2.1 ce#tag_padded.sam > ce#tag_padded.tmp.cram
841s   ./test_view -@4 -D ce#tag_padded.tmp.cram > ce#tag_padded.tmp.cram.sam_
841s   ./compare_sam.pl -nomd ce#tag_padded.sam ce#tag_padded.tmp.cram.sam_
841s   ./test_view -@4 -t ce.fa -C -o VERSION=3.0 ce#tag_padded.tmp.bam > ce#tag_padded.tmp.bam.cram
841s   ./test_view -@4 ce#tag_padded.tmp.bam.cram > ce#tag_padded.tmp.bam.cram.bam.sam_
841s   ./compare_sam.pl -nomd ce#tag_padded.sam ce#tag_padded.tmp.bam.cram.bam.sam_
841s .. ok
841s 
841s test_view testing ce#unmap.sam, ref ce.fa:
841s   ./test_view -@4 -S -l0 -b ce#unmap.sam > ce#unmap.tmp.bam
841s   ./test_view -@4 ce#unmap.tmp.bam > ce#unmap.tmp.bam.sam_
841s   ./compare_sam.pl ce#unmap.sam ce#unmap.tmp.bam.sam_
841s   ./test_view -@4 -t ce.fa -S -C -o VERSION=2.1 ce#unmap.sam > ce#unmap.tmp.cram
841s   ./test_view -@4 -D ce#unmap.tmp.cram > ce#unmap.tmp.cram.sam_
841s   ./compare_sam.pl -nomd ce#unmap.sam ce#unmap.tmp.cram.sam_
841s   ./test_view -@4 -t ce.fa -C -o VERSION=3.0 ce#unmap.tmp.bam > ce#unmap.tmp.bam.cram
841s   ./test_view -@4 ce#unmap.tmp.bam.cram > ce#unmap.tmp.bam.cram.bam.sam_
841s   ./compare_sam.pl -nomd ce#unmap.sam ce#unmap.tmp.bam.cram.bam.sam_
841s   ./test_view -@4 -t ce.fa -C -o VERSION=3.0 -o seqs_per_slice=7 -o slices_per_container=5 ce#unmap.tmp.bam.cram > ce#unmap.tmp.bam.cram.ms
841s   ./test_view -@4 ce#unmap.tmp.bam.cram.ms > ce#unmap.tmp.bam.cram.sam_
841s   ./compare_sam.pl -nomd ce#unmap.sam ce#unmap.tmp.bam.cram.sam_
841s .. ok
841s 
841s test_view testing ce#unmap1.sam, ref ce.fa:
841s   ./test_view -@4 -S -l0 -b ce#unmap1.sam > ce#unmap1.tmp.bam
841s   ./test_view -@4 ce#unmap1.tmp.bam > ce#unmap1.tmp.bam.sam_
841s   ./compare_sam.pl ce#unmap1.sam ce#unmap1.tmp.bam.sam_
841s   ./test_view -@4 -t ce.fa -S -C -o VERSION=2.1 ce#unmap1.sam > ce#unmap1.tmp.cram
841s   ./test_view -@4 -D ce#unmap1.tmp.cram > ce#unmap1.tmp.cram.sam_
841s   ./compare_sam.pl -nomd ce#unmap1.sam ce#unmap1.tmp.cram.sam_
841s   ./test_view -@4 -t ce.fa -C -o VERSION=3.0 ce#unmap1.tmp.bam > ce#unmap1.tmp.bam.cram
841s   ./test_view -@4 ce#unmap1.tmp.bam.cram > ce#unmap1.tmp.bam.cram.bam.sam_
841s   ./compare_sam.pl -nomd ce#unmap1.sam ce#unmap1.tmp.bam.cram.bam.sam_
841s   ./test_view -@4 -t ce.fa -C -o VERSION=3.0 -o seqs_per_slice=7 -o slices_per_container=5 ce#unmap1.tmp.bam.cram > ce#unmap1.tmp.bam.cram.ms
841s   ./test_view -@4 ce#unmap1.tmp.bam.cram.ms > ce#unmap1.tmp.bam.cram.sam_
841s   ./compare_sam.pl -nomd ce#unmap1.sam ce#unmap1.tmp.bam.cram.sam_
841s .. ok
841s 
841s test_view testing ce#unmap2.sam, ref ce.fa:
841s   ./test_view -@4 -S -l0 -b ce#unmap2.sam > ce#unmap2.tmp.bam
841s   ./test_view -@4 ce#unmap2.tmp.bam > ce#unmap2.tmp.bam.sam_
841s   ./compare_sam.pl ce#unmap2.sam ce#unmap2.tmp.bam.sam_
841s   ./test_view -@4 -t ce.fa -S -C -o VERSION=2.1 ce#unmap2.sam > ce#unmap2.tmp.cram
841s   ./test_view -@4 -D ce#unmap2.tmp.cram > ce#unmap2.tmp.cram.sam_
841s   ./compare_sam.pl -nomd ce#unmap2.sam ce#unmap2.tmp.cram.sam_
841s   ./test_view -@4 -t ce.fa -C -o VERSION=3.0 ce#unmap2.tmp.bam > ce#unmap2.tmp.bam.cram
841s   ./test_view -@4 ce#unmap2.tmp.bam.cram > ce#unmap2.tmp.bam.cram.bam.sam_
841s   ./compare_sam.pl -nomd ce#unmap2.sam ce#unmap2.tmp.bam.cram.bam.sam_
841s   ./test_view -@4 -t ce.fa -C -o VERSION=3.0 -o seqs_per_slice=7 -o slices_per_container=5 ce#unmap2.tmp.bam.cram > ce#unmap2.tmp.bam.cram.ms
841s   ./test_view -@4 ce#unmap2.tmp.bam.cram.ms > ce#unmap2.tmp.bam.cram.sam_
841s   ./compare_sam.pl -nomd ce#unmap2.sam ce#unmap2.tmp.bam.cram.sam_
841s .. ok
841s 
841s test_view testing md#1.sam, ref md.fa:
841s   ./test_view -@4 -S -l0 -b md#1.sam > md#1.tmp.bam
841s   ./test_view -@4 md#1.tmp.bam > md#1.tmp.bam.sam_
841s   ./compare_sam.pl md#1.sam md#1.tmp.bam.sam_
841s   ./test_view -@4 -t md.fa -S -C -o VERSION=2.1 md#1.sam > md#1.tmp.cram
841s   ./test_view -@4 -D md#1.tmp.cram > md#1.tmp.cram.sam_
841s   ./compare_sam.pl  md#1.sam md#1.tmp.cram.sam_
842s   ./test_view -@4 -t md.fa -C -o VERSION=3.0 md#1.tmp.bam > md#1.tmp.bam.cram
842s   ./test_view -@4 md#1.tmp.bam.cram > md#1.tmp.bam.cram.bam.sam_
842s   ./compare_sam.pl  md#1.sam md#1.tmp.bam.cram.bam.sam_
842s .. ok
842s 
842s test_view testing xx#blank.sam, ref xx.fa:
842s   ./test_view -@4 -S -l0 -b xx#blank.sam > xx#blank.tmp.bam
842s   ./test_view -@4 xx#blank.tmp.bam > xx#blank.tmp.bam.sam_
842s   ./compare_sam.pl xx#blank.sam xx#blank.tmp.bam.sam_
842s   ./test_view -@4 -t xx.fa -S -C -o VERSION=2.1 xx#blank.sam > xx#blank.tmp.cram
842s   ./test_view -@4 -D xx#blank.tmp.cram > xx#blank.tmp.cram.sam_
842s   ./compare_sam.pl -nomd xx#blank.sam xx#blank.tmp.cram.sam_
842s   ./test_view -@4 -t xx.fa -C -o VERSION=3.0 xx#blank.tmp.bam > xx#blank.tmp.bam.cram
842s   ./test_view -@4 xx#blank.tmp.bam.cram > xx#blank.tmp.bam.cram.bam.sam_
842s   ./compare_sam.pl -nomd xx#blank.sam xx#blank.tmp.bam.cram.bam.sam_
842s   ./test_view -@4 -t xx.fa -C -o VERSION=3.0 -o seqs_per_slice=7 -o slices_per_container=5 xx#blank.tmp.bam.cram > xx#blank.tmp.bam.cram.ms
842s   ./test_view -@4 xx#blank.tmp.bam.cram.ms > xx#blank.tmp.bam.cram.sam_
842s   ./compare_sam.pl -nomd xx#blank.sam xx#blank.tmp.bam.cram.sam_
842s   ./test_view -@4 -t xx.fa -S -l7 -C -o VERSION=3.1 -o archive xx#blank.sam > xx#blank.tmp.cram
842s   ./test_view -@4 -D xx#blank.tmp.cram > xx#blank.tmp.cram.sam_
842s   ./compare_sam.pl -nomd xx#blank.sam xx#blank.tmp.cram.sam_
842s   ./test_view -@4 -t xx.fa -S -l7 -C -o VERSION=4.0 -o archive xx#blank.sam > xx#blank.tmp.cram
842s [W::cram_set_voption] CRAM version 4.0 is still a draft and subject to change.
842s This is a technology demonstration that should not be used for archival data.
842s   ./test_view -@4 -D xx#blank.tmp.cram > xx#blank.tmp.cram.sam_
842s   ./compare_sam.pl -nomd xx#blank.sam xx#blank.tmp.cram.sam_
842s .. ok
842s 
842s test_view testing xx#large_aux.sam, ref xx.fa:
842s   ./test_view -@4 -S -l0 -b xx#large_aux.sam > xx#large_aux.tmp.bam
842s   ./test_view -@4 xx#large_aux.tmp.bam > xx#large_aux.tmp.bam.sam_
842s   ./compare_sam.pl xx#large_aux.sam xx#large_aux.tmp.bam.sam_
842s   ./test_view -@4 -t xx.fa -S -C -o VERSION=2.1 xx#large_aux.sam > xx#large_aux.tmp.cram
842s   ./test_view -@4 -D xx#large_aux.tmp.cram > xx#large_aux.tmp.cram.sam_
842s   ./compare_sam.pl -nomd xx#large_aux.sam xx#large_aux.tmp.cram.sam_
842s   ./test_view -@4 -t xx.fa -C -o VERSION=3.0 xx#large_aux.tmp.bam > xx#large_aux.tmp.bam.cram
842s   ./test_view -@4 xx#large_aux.tmp.bam.cram > xx#large_aux.tmp.bam.cram.bam.sam_
842s   ./compare_sam.pl -nomd xx#large_aux.sam xx#large_aux.tmp.bam.cram.bam.sam_
842s   ./test_view -@4 -t xx.fa -S -l7 -C -o VERSION=3.1 -o archive xx#large_aux.sam > xx#large_aux.tmp.cram
842s   ./test_view -@4 -D xx#large_aux.tmp.cram > xx#large_aux.tmp.cram.sam_
842s   ./compare_sam.pl -nomd xx#large_aux.sam xx#large_aux.tmp.cram.sam_
842s   ./test_view -@4 -t xx.fa -S -l7 -C -o VERSION=4.0 -o fast xx#large_aux.sam > xx#large_aux.tmp.cram
842s [W::cram_set_voption] CRAM version 4.0 is still a draft and subject to change.
842s This is a technology demonstration that should not be used for archival data.
842s   ./test_view -@4 -D xx#large_aux.tmp.cram > xx#large_aux.tmp.cram.sam_
843s   ./compare_sam.pl -nomd xx#large_aux.sam xx#large_aux.tmp.cram.sam_
843s   ./test_view -@4 -t xx.fa -S -l7 -C -o VERSION=4.0 -o normal xx#large_aux.sam > xx#large_aux.tmp.cram
843s [W::cram_set_voption] CRAM version 4.0 is still a draft and subject to change.
843s This is a technology demonstration that should not be used for archival data.
843s   ./test_view -@4 -D xx#large_aux.tmp.cram > xx#large_aux.tmp.cram.sam_
843s   ./compare_sam.pl -nomd xx#large_aux.sam xx#large_aux.tmp.cram.sam_
843s   ./test_view -@4 -t xx.fa -S -l7 -C -o VERSION=4.0 -o small xx#large_aux.sam > xx#large_aux.tmp.cram
843s [W::cram_set_voption] CRAM version 4.0 is still a draft and subject to change.
843s This is a technology demonstration that should not be used for archival data.
843s   ./test_view -@4 -D xx#large_aux.tmp.cram > xx#large_aux.tmp.cram.sam_
843s   ./compare_sam.pl -nomd xx#large_aux.sam xx#large_aux.tmp.cram.sam_
843s   ./test_view -@4 -t xx.fa -S -l7 -C -o VERSION=4.0 -o archive xx#large_aux.sam > xx#large_aux.tmp.cram
843s [W::cram_set_voption] CRAM version 4.0 is still a draft and subject to change.
843s This is a technology demonstration that should not be used for archival data.
843s   ./test_view -@4 -D xx#large_aux.tmp.cram > xx#large_aux.tmp.cram.sam_
843s   ./compare_sam.pl -nomd xx#large_aux.sam xx#large_aux.tmp.cram.sam_
843s   ./test_view -@4 -i reference=xx.fa xx#large_aux_java.cram > xx#large_aux_java.tmp.sam_
843s [W::sanitise_SQ_lines] Header @SQ length mismatch for ref xx, 30 vs 20
843s   ./compare_sam.pl -Baux -nomd xx#large_aux.sam xx#large_aux_java.tmp.sam_
843s .. ok
843s 
843s test_view testing xx#large_aux2.sam, ref xx.fa:
843s   ./test_view -@4 -S -l0 -b xx#large_aux2.sam > xx#large_aux2.tmp.bam
843s   ./test_view -@4 xx#large_aux2.tmp.bam > xx#large_aux2.tmp.bam.sam_
843s   ./compare_sam.pl xx#large_aux2.sam xx#large_aux2.tmp.bam.sam_
843s   ./test_view -@4 -t xx.fa -S -C -o VERSION=2.1 xx#large_aux2.sam > xx#large_aux2.tmp.cram
843s   ./test_view -@4 -D xx#large_aux2.tmp.cram > xx#large_aux2.tmp.cram.sam_
843s   ./compare_sam.pl -nomd xx#large_aux2.sam xx#large_aux2.tmp.cram.sam_
843s   ./test_view -@4 -t xx.fa -C -o VERSION=3.0 xx#large_aux2.tmp.bam > xx#large_aux2.tmp.bam.cram
843s   ./test_view -@4 xx#large_aux2.tmp.bam.cram > xx#large_aux2.tmp.bam.cram.bam.sam_
843s   ./compare_sam.pl -nomd xx#large_aux2.sam xx#large_aux2.tmp.bam.cram.bam.sam_
843s .. ok
843s 
843s test_view testing xx#MD.sam, ref xx.fa:
843s   ./test_view -@4 -S -l0 -b xx#MD.sam > xx#MD.tmp.bam
843s   ./test_view -@4 xx#MD.tmp.bam > xx#MD.tmp.bam.sam_
843s   ./compare_sam.pl xx#MD.sam xx#MD.tmp.bam.sam_
844s   ./test_view -@4 -t xx.fa -S -C -o VERSION=2.1 xx#MD.sam > xx#MD.tmp.cram
844s   ./test_view -@4 -D xx#MD.tmp.cram > xx#MD.tmp.cram.sam_
844s   ./compare_sam.pl -nomd xx#MD.sam xx#MD.tmp.cram.sam_
844s   ./test_view -@4 -t xx.fa -C -o VERSION=3.0 xx#MD.tmp.bam > xx#MD.tmp.bam.cram
844s   ./test_view -@4 xx#MD.tmp.bam.cram > xx#MD.tmp.bam.cram.bam.sam_
844s   ./compare_sam.pl -nomd xx#MD.sam xx#MD.tmp.bam.cram.bam.sam_
844s   ./test_view -@4 -t xx.fa -S -l7 -C -o VERSION=3.1 -o archive xx#MD.sam > xx#MD.tmp.cram
844s   ./test_view -@4 -D xx#MD.tmp.cram > xx#MD.tmp.cram.sam_
844s   ./compare_sam.pl -nomd xx#MD.sam xx#MD.tmp.cram.sam_
844s   ./test_view -@4 -t xx.fa -S -l7 -C -o VERSION=4.0 -o archive xx#MD.sam > xx#MD.tmp.cram
844s [W::cram_set_voption] CRAM version 4.0 is still a draft and subject to change.
844s This is a technology demonstration that should not be used for archival data.
844s   ./test_view -@4 -D xx#MD.tmp.cram > xx#MD.tmp.cram.sam_
844s   ./compare_sam.pl -nomd xx#MD.sam xx#MD.tmp.cram.sam_
844s .. ok
844s 
844s test_view testing xx#MD2.sam, ref xx.fa:
844s   ./test_view -@4 -S -l0 -b xx#MD2.sam > xx#MD2.tmp.bam
844s   ./test_view -@4 xx#MD2.tmp.bam > xx#MD2.tmp.bam.sam_
844s   ./compare_sam.pl xx#MD2.sam xx#MD2.tmp.bam.sam_
844s   ./test_view -@4 -t xx.fa -S -C -o VERSION=2.1 xx#MD2.sam > xx#MD2.tmp.cram
844s   ./test_view -@4 -D xx#MD2.tmp.cram > xx#MD2.tmp.cram.sam_
844s   ./compare_sam.pl -nomd xx#MD2.sam xx#MD2.tmp.cram.sam_
844s   ./test_view -@4 -t xx.fa -C -o VERSION=3.0 xx#MD2.tmp.bam > xx#MD2.tmp.bam.cram
844s   ./test_view -@4 xx#MD2.tmp.bam.cram > xx#MD2.tmp.bam.cram.bam.sam_
844s   ./compare_sam.pl -nomd xx#MD2.sam xx#MD2.tmp.bam.cram.bam.sam_
844s .. ok
844s 
844s test_view testing xx#minimal.sam, ref xx.fa:
844s   ./test_view -@4 -S -l0 -b xx#minimal.sam > xx#minimal.tmp.bam
844s   ./test_view -@4 xx#minimal.tmp.bam > xx#minimal.tmp.bam.sam_
844s   ./compare_sam.pl xx#minimal.sam xx#minimal.tmp.bam.sam_
844s   ./test_view -@4 -t xx.fa -S -C -o VERSION=2.1 xx#minimal.sam > xx#minimal.tmp.cram
844s   ./test_view -@4 -D xx#minimal.tmp.cram > xx#minimal.tmp.cram.sam_
844s   ./compare_sam.pl -nomd xx#minimal.sam xx#minimal.tmp.cram.sam_
844s   ./test_view -@4 -t xx.fa -C -o VERSION=3.0 xx#minimal.tmp.bam > xx#minimal.tmp.bam.cram
844s   ./test_view -@4 xx#minimal.tmp.bam.cram > xx#minimal.tmp.bam.cram.bam.sam_
844s   ./compare_sam.pl -nomd xx#minimal.sam xx#minimal.tmp.bam.cram.bam.sam_
844s   ./test_view -@4 -t xx.fa -C -o VERSION=3.0 -o seqs_per_slice=7 -o slices_per_container=5 xx#minimal.tmp.bam.cram > xx#minimal.tmp.bam.cram.ms
844s   ./test_view -@4 xx#minimal.tmp.bam.cram.ms > xx#minimal.tmp.bam.cram.sam_
844s   ./compare_sam.pl -nomd xx#minimal.sam xx#minimal.tmp.bam.cram.sam_
844s .. ok
844s 
844s test_view testing xx#pair.sam, ref xx.fa:
844s   ./test_view -@4 -S -l0 -b xx#pair.sam > xx#pair.tmp.bam
844s   ./test_view -@4 xx#pair.tmp.bam > xx#pair.tmp.bam.sam_
844s   ./compare_sam.pl xx#pair.sam xx#pair.tmp.bam.sam_
844s   ./test_view -@4 -t xx.fa -S -C -o VERSION=2.1 xx#pair.sam > xx#pair.tmp.cram
844s   ./test_view -@4 -D xx#pair.tmp.cram > xx#pair.tmp.cram.sam_
844s   ./compare_sam.pl -nomd xx#pair.sam xx#pair.tmp.cram.sam_
844s   ./test_view -@4 -t xx.fa -C -o VERSION=3.0 xx#pair.tmp.bam > xx#pair.tmp.bam.cram
844s   ./test_view -@4 xx#pair.tmp.bam.cram > xx#pair.tmp.bam.cram.bam.sam_
844s   ./compare_sam.pl -nomd xx#pair.sam xx#pair.tmp.bam.cram.bam.sam_
844s   ./test_view -@4 -t xx.fa -S -l7 -C -o VERSION=3.1 -o archive xx#pair.sam > xx#pair.tmp.cram
844s   ./test_view -@4 -D xx#pair.tmp.cram > xx#pair.tmp.cram.sam_
844s   ./compare_sam.pl -nomd xx#pair.sam xx#pair.tmp.cram.sam_
844s   ./test_view -@4 -t xx.fa -S -l7 -C -o VERSION=4.0 -o archive xx#pair.sam > xx#pair.tmp.cram
844s [W::cram_set_voption] CRAM version 4.0 is still a draft and subject to change.
844s This is a technology demonstration that should not be used for archival data.
845s   ./test_view -@4 -D xx#pair.tmp.cram > xx#pair.tmp.cram.sam_
845s   ./compare_sam.pl -nomd xx#pair.sam xx#pair.tmp.cram.sam_
845s .. ok
845s 
845s test_view testing xx#repeated.sam, ref xx.fa:
845s   ./test_view -@4 -S -l0 -b xx#repeated.sam > xx#repeated.tmp.bam
845s   ./test_view -@4 xx#repeated.tmp.bam > xx#repeated.tmp.bam.sam_
845s   ./compare_sam.pl xx#repeated.sam xx#repeated.tmp.bam.sam_
845s   ./test_view -@4 -t xx.fa -S -C -o VERSION=2.1 xx#repeated.sam > xx#repeated.tmp.cram
845s   ./test_view -@4 -D xx#repeated.tmp.cram > xx#repeated.tmp.cram.sam_
845s   ./compare_sam.pl -nomd xx#repeated.sam xx#repeated.tmp.cram.sam_
845s   ./test_view -@4 -t xx.fa -C -o VERSION=3.0 xx#repeated.tmp.bam > xx#repeated.tmp.bam.cram
845s   ./test_view -@4 xx#repeated.tmp.bam.cram > xx#repeated.tmp.bam.cram.bam.sam_
845s   ./compare_sam.pl -nomd xx#repeated.sam xx#repeated.tmp.bam.cram.bam.sam_
845s .. ok
845s 
845s test_view testing xx#rg.sam, ref xx.fa:
845s   ./test_view -@4 -S -l0 -b xx#rg.sam > xx#rg.tmp.bam
845s   ./test_view -@4 xx#rg.tmp.bam > xx#rg.tmp.bam.sam_
845s   ./compare_sam.pl xx#rg.sam xx#rg.tmp.bam.sam_
845s   ./test_view -@4 -t xx.fa -S -C -o VERSION=2.1 xx#rg.sam > xx#rg.tmp.cram
845s   ./test_view -@4 -D xx#rg.tmp.cram > xx#rg.tmp.cram.sam_
845s   ./compare_sam.pl -nomd xx#rg.sam xx#rg.tmp.cram.sam_
845s   ./test_view -@4 -t xx.fa -C -o VERSION=3.0 xx#rg.tmp.bam > xx#rg.tmp.bam.cram
845s   ./test_view -@4 xx#rg.tmp.bam.cram > xx#rg.tmp.bam.cram.bam.sam_
845s   ./compare_sam.pl -nomd xx#rg.sam xx#rg.tmp.bam.cram.bam.sam_
845s .. ok
845s 
845s test_view testing xx#tlen.sam, ref xx.fa:
845s   ./test_view -@4 -S -l0 -b xx#tlen.sam > xx#tlen.tmp.bam
845s   ./test_view -@4 xx#tlen.tmp.bam > xx#tlen.tmp.bam.sam_
845s   ./compare_sam.pl xx#tlen.sam xx#tlen.tmp.bam.sam_
845s   ./test_view -@4 -t xx.fa -S -C -o VERSION=2.1 xx#tlen.sam > xx#tlen.tmp.cram
845s   ./test_view -@4 -D xx#tlen.tmp.cram > xx#tlen.tmp.cram.sam_
845s   ./compare_sam.pl -nomd xx#tlen.sam xx#tlen.tmp.cram.sam_
845s   ./test_view -@4 -t xx.fa -C -o VERSION=3.0 xx#tlen.tmp.bam > xx#tlen.tmp.bam.cram
845s   ./test_view -@4 xx#tlen.tmp.bam.cram > xx#tlen.tmp.bam.cram.bam.sam_
845s   ./compare_sam.pl -nomd xx#tlen.sam xx#tlen.tmp.bam.cram.bam.sam_
845s   ./test_view -@4 -t xx.fa -C -o VERSION=3.0 -o seqs_per_slice=7 -o slices_per_container=5 xx#tlen.tmp.bam.cram > xx#tlen.tmp.bam.cram.ms
845s   ./test_view -@4 xx#tlen.tmp.bam.cram.ms > xx#tlen.tmp.bam.cram.sam_
845s   ./compare_sam.pl -nomd xx#tlen.sam xx#tlen.tmp.bam.cram.sam_
845s   ./test_view -@4 -t xx.fa -S -l7 -C -o VERSION=3.1 -o archive xx#tlen.sam > xx#tlen.tmp.cram
845s   ./test_view -@4 -D xx#tlen.tmp.cram > xx#tlen.tmp.cram.sam_
845s   ./compare_sam.pl -nomd xx#tlen.sam xx#tlen.tmp.cram.sam_
845s   ./test_view -@4 -t xx.fa -S -l7 -C -o VERSION=4.0 -o archive xx#tlen.sam > xx#tlen.tmp.cram
845s [W::cram_set_voption] CRAM version 4.0 is still a draft and subject to change.
845s This is a technology demonstration that should not be used for archival data.
845s   ./test_view -@4 -D xx#tlen.tmp.cram > xx#tlen.tmp.cram.sam_
845s   ./compare_sam.pl -nomd xx#tlen.sam xx#tlen.tmp.cram.sam_
845s .. ok
845s 
845s test_view testing xx#tlen2.sam, ref xx.fa:
845s   ./test_view -@4 -S -l0 -b xx#tlen2.sam > xx#tlen2.tmp.bam
845s   ./test_view -@4 xx#tlen2.tmp.bam > xx#tlen2.tmp.bam.sam_
845s   ./compare_sam.pl xx#tlen2.sam xx#tlen2.tmp.bam.sam_
845s   ./test_view -@4 -t xx.fa -S -C -o VERSION=2.1 xx#tlen2.sam > xx#tlen2.tmp.cram
845s   ./test_view -@4 -D xx#tlen2.tmp.cram > xx#tlen2.tmp.cram.sam_
845s   ./compare_sam.pl -nomd xx#tlen2.sam xx#tlen2.tmp.cram.sam_
846s   ./test_view -@4 -t xx.fa -C -o VERSION=3.0 xx#tlen2.tmp.bam > xx#tlen2.tmp.bam.cram
846s   ./test_view -@4 xx#tlen2.tmp.bam.cram > xx#tlen2.tmp.bam.cram.bam.sam_
846s   ./compare_sam.pl -nomd xx#tlen2.sam xx#tlen2.tmp.bam.cram.bam.sam_
846s   ./test_view -@4 -t xx.fa -C -o VERSION=3.0 -o seqs_per_slice=7 -o slices_per_container=5 xx#tlen2.tmp.bam.cram > xx#tlen2.tmp.bam.cram.ms
846s   ./test_view -@4 xx#tlen2.tmp.bam.cram.ms > xx#tlen2.tmp.bam.cram.sam_
846s   ./compare_sam.pl -nomd xx#tlen2.sam xx#tlen2.tmp.bam.cram.sam_
846s .. ok
846s 
846s test_view testing xx#triplet.sam, ref xx.fa:
846s   ./test_view -@4 -S -l0 -b xx#triplet.sam > xx#triplet.tmp.bam
846s   ./test_view -@4 xx#triplet.tmp.bam > xx#triplet.tmp.bam.sam_
846s   ./compare_sam.pl xx#triplet.sam xx#triplet.tmp.bam.sam_
846s   ./test_view -@4 -t xx.fa -S -C -o VERSION=2.1 xx#triplet.sam > xx#triplet.tmp.cram
846s   ./test_view -@4 -D xx#triplet.tmp.cram > xx#triplet.tmp.cram.sam_
846s   ./compare_sam.pl -nomd xx#triplet.sam xx#triplet.tmp.cram.sam_
846s   ./test_view -@4 -t xx.fa -C -o VERSION=3.0 xx#triplet.tmp.bam > xx#triplet.tmp.bam.cram
846s   ./test_view -@4 xx#triplet.tmp.bam.cram > xx#triplet.tmp.bam.cram.bam.sam_
846s   ./compare_sam.pl -nomd xx#triplet.sam xx#triplet.tmp.bam.cram.bam.sam_
846s   ./test_view -@4 -t xx.fa -C -o VERSION=3.0 -o seqs_per_slice=7 -o slices_per_container=5 xx#triplet.tmp.bam.cram > xx#triplet.tmp.bam.cram.ms
846s   ./test_view -@4 xx#triplet.tmp.bam.cram.ms > xx#triplet.tmp.bam.cram.sam_
846s   ./compare_sam.pl -nomd xx#triplet.sam xx#triplet.tmp.bam.cram.sam_
846s .. ok
846s 
846s test_view testing xx#unsorted.sam, ref xx.fa:
846s   ./test_view -@4 -S -l0 -b xx#unsorted.sam > xx#unsorted.tmp.bam
846s   ./test_view -@4 xx#unsorted.tmp.bam > xx#unsorted.tmp.bam.sam_
846s   ./compare_sam.pl xx#unsorted.sam xx#unsorted.tmp.bam.sam_
846s   ./test_view -@4 -t xx.fa -S -C -o VERSION=2.1 xx#unsorted.sam > xx#unsorted.tmp.cram
846s   ./test_view -@4 -D xx#unsorted.tmp.cram > xx#unsorted.tmp.cram.sam_
846s   ./compare_sam.pl -nomd xx#unsorted.sam xx#unsorted.tmp.cram.sam_
846s   ./test_view -@4 -t xx.fa -C -o VERSION=3.0 xx#unsorted.tmp.bam > xx#unsorted.tmp.bam.cram
846s   ./test_view -@4 xx#unsorted.tmp.bam.cram > xx#unsorted.tmp.bam.cram.bam.sam_
846s   ./compare_sam.pl -nomd xx#unsorted.sam xx#unsorted.tmp.bam.cram.bam.sam_
846s .. ok
846s 
846s test_view testing embed_ref=2:
846s   ./test_view -@4 -C -p ce#1000_er.tmp.cram ce#1000.sam
846s [W::cram_get_ref] Failed to populate reference for id 0
846s [W::cram_write_SAM_hdr] No M5 tags present and could not find reference
846s [W::cram_write_SAM_hdr] Enabling embed_ref=2 option
846s [W::cram_write_SAM_hdr] NOTE: the CRAM file will be bigger than using an external reference
846s   ./test_view -@4 -p ce#1000_er.tmp.cram.sam ce#1000_er.tmp.cram
846s   ./compare_sam.pl ce#1000.sam ce#1000_er.tmp.cram.sam
846s .. ok
846s 
846s test_view testing region queries:
846s   ./test_view -@4 -i reference=ce.fa range.cram CHROMOSOME_II:2980-2980 CHROMOSOME_IV:1500-1500 CHROMOSOME_II:2980-2980 CHROMOSOME_I:1000-1100 > range.tmp
846s   ./compare_sam.pl range.tmp range.out
846s   ./test_view -@4 range.bam CHROMOSOME_II:2980-2980 CHROMOSOME_IV:1500-1500 CHROMOSOME_II:2980-2980 CHROMOSOME_I:1000-1100 > range.tmp
846s   ./compare_sam.pl range.tmp range.out
846s .. ok
846s 
846s test_view testing BAM files with absent @SQ lines:
846s   ./test_view -@4 -p no_hdr_sq_1.tmp.sam no_hdr_sq_1.bam
846s   ./compare_sam.pl no_hdr_sq_1.tmp.sam no_hdr_sq_1.expected.sam
846s   ./test_view -@4 -p no_hdr_sq_1.chr1.tmp.sam no_hdr_sq_1.bam CHROMOSOME_I
846s   ./compare_sam.pl no_hdr_sq_1.chr1.tmp.sam no_hdr_sq_1.expected.sam
846s .. ok
846s 
846s test_view testing large (> 2Gbases) positions:
846s   ./test_view -@4 -z -p longrefs/longref.tmp.sam.gz -x longrefs/longref.tmp.sam.gz.csi.otf -m 14 longrefs/longref.sam
846s   ./test_view -@4 -p longrefs/longref.tmp.sam_ longrefs/longref.tmp.sam.gz
846s   ./compare_sam.pl longrefs/longref.sam longrefs/longref.tmp.sam_
846s test_view:
846s 	/tmp/autopkgtest.VLO3fa/autopkgtest_tmp/test/test_index -c longrefs/longref.tmp.sam.gz
846s .. ok
846s 
846s   ./test_view -@4 -p longrefs/longref_itr.tmp.sam longrefs/longref.tmp.sam.gz CHROMOSOME_I:10000000000-10000000003
846s   ./compare_sam.pl longrefs/longref_itr.expected.sam longrefs/longref_itr.tmp.sam
846s   ./test_view -@4 -M -p longrefs/longref_multi.tmp.sam longrefs/longref.tmp.sam.gz CHROMOSOME_I:10000000000-10000000003 CHROMOSOME_I:10000000100-10000000110
846s   ./compare_sam.pl longrefs/longref_multi.expected.sam longrefs/longref_multi.tmp.sam
846s .. ok
846s 
846s 
846s test_MD testing xx#MD.sam, ref xx.fa:
846s   ./test_view -o store_nm=1 -o store_md=1 -t xx.fa -C xx#MD.sam > xx#MD.tmp.cram
846s   ./test_view -i decode_md=0 -D xx#MD.tmp.cram > xx#MD.tmp.cram.sam_
846s   ./compare_sam.pl xx#MD.sam xx#MD.tmp.cram.sam_
846s   ./test_view -t xx.fa -C xx#MD.sam > xx#MD.tmp.cram
846s   ./test_view -i decode_md=0 -D xx#MD.tmp.cram > xx#MD.tmp.cram.sam_
846s   ./compare_sam.pl -partialmd=2 xx#MD.sam xx#MD.tmp.cram.sam_
847s   Checking for MD/NM in xx#MD.sam
847s   ./test_view -t xx.fa -C xx#MD.sam > xx#MD.tmp.cram
847s   ./test_view -i decode_md=1 -D xx#MD.tmp.cram > xx#MD.tmp.cram.sam_
847s   ./compare_sam.pl -partialmd=1 xx#MD.sam xx#MD.tmp.cram.sam_
847s .. ok
847s 
847s 
847s test_MD testing xx#MD2.sam, ref xx.fa:
847s   ./test_view -o store_nm=1 -o store_md=1 -t xx.fa -C xx#MD2.sam > xx#MD2.tmp.cram
847s   ./test_view -i decode_md=0 -D xx#MD2.tmp.cram > xx#MD2.tmp.cram.sam_
847s   ./compare_sam.pl xx#MD2.sam xx#MD2.tmp.cram.sam_
847s   ./test_view -t xx.fa -C xx#MD2.sam > xx#MD2.tmp.cram
847s   ./test_view -i decode_md=0 -D xx#MD2.tmp.cram > xx#MD2.tmp.cram.sam_
847s   ./compare_sam.pl -partialmd=2 xx#MD2.sam xx#MD2.tmp.cram.sam_
847s   ./test_view -t xx.fa -C xx#MD2.sam > xx#MD2.tmp.cram
847s   ./test_view -i decode_md=1 -D xx#MD2.tmp.cram > xx#MD2.tmp.cram.sam_
847s   ./compare_sam.pl -partialmd=1 xx#MD2.sam xx#MD2.tmp.cram.sam_
847s .. ok
847s 
847s test_vcf_api:
847s 	/tmp/autopkgtest.VLO3fa/autopkgtest_tmp/test/test-vcf-api /tmp/WW8fyV4Q1_/test-vcf-api.bcf
847s .. ok
847s 
847s test_bcf2vcf:
847s 	/tmp/autopkgtest.VLO3fa/autopkgtest_tmp/test/test_view /tmp/autopkgtest.VLO3fa/autopkgtest_tmp/test/tabix/vcf_file.bcf
847s .. ok
847s 
847s test_vcf_sweep:
847s 	/tmp/autopkgtest.VLO3fa/autopkgtest_tmp/test/test-vcf-sweep /tmp/WW8fyV4Q1_/test-vcf-api.bcf
847s .. ok
847s 
847s test_vcf_various:
847s 	/tmp/autopkgtest.VLO3fa/autopkgtest_tmp/htsfile -ch /tmp/autopkgtest.VLO3fa/autopkgtest_tmp/test/test-vcf-hdr-in.vcf
847s .. ok
847s 
847s test_vcf_various:
847s 	/tmp/autopkgtest.VLO3fa/autopkgtest_tmp/htsfile -c /tmp/autopkgtest.VLO3fa/autopkgtest_tmp/test/formatcols.vcf
847s .. ok
847s 
847s test_vcf_various:
847s 	/tmp/autopkgtest.VLO3fa/autopkgtest_tmp/htsfile -c /tmp/autopkgtest.VLO3fa/autopkgtest_tmp/test/noroundtrip.vcf
847s .. ok
847s 
847s test_vcf_various:
847s 	/tmp/autopkgtest.VLO3fa/autopkgtest_tmp/htsfile -c /tmp/autopkgtest.VLO3fa/autopkgtest_tmp/test/formatmissing.vcf
847s .. ok
847s 
847s test_vcf_various:
847s 	/tmp/autopkgtest.VLO3fa/autopkgtest_tmp/htsfile -c /tmp/autopkgtest.VLO3fa/autopkgtest_tmp/test/vcf_meta_meta.vcf
847s .. ok
847s 
847s test_vcf_various:
847s 	/tmp/autopkgtest.VLO3fa/autopkgtest_tmp/test/test_view /tmp/autopkgtest.VLO3fa/autopkgtest_tmp/test/modhdr.vcf.gz chr22:1-2
847s .. ok
847s 
847s test-bcf-sr:
847s 	/tmp/autopkgtest.VLO3fa/autopkgtest_tmp/test/test-bcf-sr.pl -t /tmp/WW8fyV4Q1_ -s 74452500
847s .. ok
847s 
847s test-bcf-sr:
847s 	/tmp/autopkgtest.VLO3fa/autopkgtest_tmp/test/test-bcf-sr.pl -t /tmp/WW8fyV4Q1_ -s 34270147
847s .. ok
847s 
847s test-bcf-sr:
847s 	/tmp/autopkgtest.VLO3fa/autopkgtest_tmp/test/test-bcf-sr.pl -t /tmp/WW8fyV4Q1_ -s 11108528
848s .. ok
848s 
848s test-bcf-sr:
848s 	/tmp/autopkgtest.VLO3fa/autopkgtest_tmp/test/test-bcf-sr.pl -t /tmp/WW8fyV4Q1_ -s 42233895
848s .. ok
848s 
848s test-bcf-sr:
848s 	/tmp/autopkgtest.VLO3fa/autopkgtest_tmp/test/test-bcf-sr.pl -t /tmp/WW8fyV4Q1_ -s 8111117
848s .. ok
848s 
848s test-bcf-sr:
848s 	/tmp/autopkgtest.VLO3fa/autopkgtest_tmp/test/test-bcf-sr.pl -t /tmp/WW8fyV4Q1_ -s 85644070
848s .. ok
848s 
848s test-bcf-sr:
848s 	/tmp/autopkgtest.VLO3fa/autopkgtest_tmp/test/test-bcf-sr.pl -t /tmp/WW8fyV4Q1_ -s 49879942
848s .. ok
848s 
848s test-bcf-sr:
848s 	/tmp/autopkgtest.VLO3fa/autopkgtest_tmp/test/test-bcf-sr.pl -t /tmp/WW8fyV4Q1_ -s 47881429
849s .. ok
849s 
849s test-bcf-sr:
849s 	/tmp/autopkgtest.VLO3fa/autopkgtest_tmp/test/test-bcf-sr.pl -t /tmp/WW8fyV4Q1_ -s 69081244
849s .. ok
849s 
849s test-bcf-sr:
849s 	/tmp/autopkgtest.VLO3fa/autopkgtest_tmp/test/test-bcf-sr.pl -t /tmp/WW8fyV4Q1_ -s 83459376
849s .. ok
849s 
849s test_bcf_sr_no_index:
849s 	/tmp/autopkgtest.VLO3fa/autopkgtest_tmp/test/test-bcf-sr --no-index -p all --args /tmp/autopkgtest.VLO3fa/autopkgtest_tmp/test/bcf-sr/merge.noidx.a.vcf /tmp/autopkgtest.VLO3fa/autopkgtest_tmp/test/bcf-sr/merge.noidx.b.vcf /tmp/autopkgtest.VLO3fa/autopkgtest_tmp/test/bcf-sr/merge.noidx.c.vcf 2> /tmp/WW8fyV4Q1_/no_index_1.err
849s .. ok
849s 
849s test_bcf_sr_no_index:
849s 	/tmp/autopkgtest.VLO3fa/autopkgtest_tmp/test/test-bcf-sr --no-index -p all --args /tmp/autopkgtest.VLO3fa/autopkgtest_tmp/test/bcf-sr/merge.noidx.a.vcf /tmp/autopkgtest.VLO3fa/autopkgtest_tmp/test/bcf-sr/merge.noidx.hdr_order.vcf > /tmp/WW8fyV4Q1_/no_index_2.out 2> /tmp/WW8fyV4Q1_/no_index_2.err (expected fail)
849s .. ok
849s 
849s test_bcf_sr_no_index:
849s 	/tmp/autopkgtest.VLO3fa/autopkgtest_tmp/test/test-bcf-sr --no-index -p all --args /tmp/autopkgtest.VLO3fa/autopkgtest_tmp/test/bcf-sr/merge.noidx.a.vcf /tmp/autopkgtest.VLO3fa/autopkgtest_tmp/test/bcf-sr/merge.noidx.rec_order.vcf > /tmp/WW8fyV4Q1_/no_index_3.out 2> /tmp/WW8fyV4Q1_/no_index_3.err (expected fail)
849s .. ok
849s 
849s test_bcf_sr_no_index:
849s 	/tmp/autopkgtest.VLO3fa/autopkgtest_tmp/test/test-bcf-sr --no-index -p all --args /tmp/autopkgtest.VLO3fa/autopkgtest_tmp/test/bcf-sr/merge.noidx.rec_order.vcf /tmp/autopkgtest.VLO3fa/autopkgtest_tmp/test/bcf-sr/merge.noidx.a.vcf > /tmp/WW8fyV4Q1_/no_index_4.out 2> /tmp/WW8fyV4Q1_/no_index_4.err (expected fail)
849s .. ok
849s 
849s test_bcf_sr_range:
849s 	/tmp/autopkgtest.VLO3fa/autopkgtest_tmp/test/test_view -b -p /tmp/WW8fyV4Q1_/weird-chr-names.vcf.bcf -x /tmp/WW8fyV4Q1_/weird-chr-names.vcf.bcf.csi /tmp/autopkgtest.VLO3fa/autopkgtest_tmp/test/bcf-sr/weird-chr-names.vcf
849s .. ok
849s 
849s test_bcf_sr_range:
849s 	/tmp/autopkgtest.VLO3fa/autopkgtest_tmp/test/test-bcf-sr -O vcf -o /tmp/WW8fyV4Q1_/range_test_1.out.vcf -r '1' --args /tmp/WW8fyV4Q1_/weird-chr-names.vcf.bcf
849s .. ok
849s 
849s test_bcf_sr_range:
849s 	/tmp/autopkgtest.VLO3fa/autopkgtest_tmp/test/test-bcf-sr -O vcf -o /tmp/WW8fyV4Q1_/range_test_2.out.vcf -r '1:1-2' --args /tmp/WW8fyV4Q1_/weird-chr-names.vcf.bcf
849s .. ok
849s 
849s test_bcf_sr_range:
849s 	/tmp/autopkgtest.VLO3fa/autopkgtest_tmp/test/test-bcf-sr -O vcf -o /tmp/WW8fyV4Q1_/range_test_3.out.vcf -r '1:1,1:2' --args /tmp/WW8fyV4Q1_/weird-chr-names.vcf.bcf
849s .. ok
849s 
849s test_bcf_sr_range:
849s 	/tmp/autopkgtest.VLO3fa/autopkgtest_tmp/test/test-bcf-sr -O vcf -o /tmp/WW8fyV4Q1_/range_test_4.out.vcf -r '1:1-1' --args /tmp/WW8fyV4Q1_/weird-chr-names.vcf.bcf
849s .. ok
849s 
849s test_bcf_sr_range:
849s 	/tmp/autopkgtest.VLO3fa/autopkgtest_tmp/test/test-bcf-sr -O vcf -o /tmp/WW8fyV4Q1_/range_test_5.out.vcf -r '{1:1}' --args /tmp/WW8fyV4Q1_/weird-chr-names.vcf.bcf
849s .. ok
849s 
849s test_bcf_sr_range:
849s 	/tmp/autopkgtest.VLO3fa/autopkgtest_tmp/test/test-bcf-sr -O vcf -o /tmp/WW8fyV4Q1_/range_test_6.out.vcf -r '{1:1}:1-2' --args /tmp/WW8fyV4Q1_/weird-chr-names.vcf.bcf
849s .. ok
849s 
849s test_bcf_sr_range:
849s 	/tmp/autopkgtest.VLO3fa/autopkgtest_tmp/test/test-bcf-sr -O vcf -o /tmp/WW8fyV4Q1_/range_test_7.out.vcf -r '{1:1}:1,{1:1}:2' --args /tmp/WW8fyV4Q1_/weird-chr-names.vcf.bcf
849s .. ok
849s 
849s test_bcf_sr_range:
849s 	/tmp/autopkgtest.VLO3fa/autopkgtest_tmp/test/test-bcf-sr -O vcf -o /tmp/WW8fyV4Q1_/range_test_8.out.vcf -r '{1:1}:1-1' --args /tmp/WW8fyV4Q1_/weird-chr-names.vcf.bcf
849s .. ok
849s 
849s test_bcf_sr_range:
849s 	/tmp/autopkgtest.VLO3fa/autopkgtest_tmp/test/test-bcf-sr -O vcf -o /tmp/WW8fyV4Q1_/range_test_9.out.vcf -r '{1:1-1}' --args /tmp/WW8fyV4Q1_/weird-chr-names.vcf.bcf
849s .. ok
849s 
849s test_bcf_sr_range:
849s 	/tmp/autopkgtest.VLO3fa/autopkgtest_tmp/test/test-bcf-sr -O vcf -o /tmp/WW8fyV4Q1_/range_test_10.out.vcf -r '{1:1-1}:1-2' --args /tmp/WW8fyV4Q1_/weird-chr-names.vcf.bcf
849s .. ok
849s 
849s test_bcf_sr_range:
849s 	/tmp/autopkgtest.VLO3fa/autopkgtest_tmp/test/test-bcf-sr -O vcf -o /tmp/WW8fyV4Q1_/range_test_11.out.vcf -r '{1:1-1}:1,{1:1-1}:2' --args /tmp/WW8fyV4Q1_/weird-chr-names.vcf.bcf
849s .. ok
849s 
849s test_bcf_sr_range:
849s 	/tmp/autopkgtest.VLO3fa/autopkgtest_tmp/test/test-bcf-sr -O vcf -o /tmp/WW8fyV4Q1_/range_test_12.out.vcf -r '{1:1-1}:1-1' --args /tmp/WW8fyV4Q1_/weird-chr-names.vcf.bcf
849s .. ok
849s 
849s test_bcf_sr_range:
849s 	/tmp/autopkgtest.VLO3fa/autopkgtest_tmp/test/test-bcf-sr -O vcf -o /tmp/WW8fyV4Q1_/range_test_13.out.vcf -r '{1:1-1}-2' --args /tmp/WW8fyV4Q1_/weird-chr-names.vcf.bcf (expected fail)
849s [E::_regions_init_string] Could not parse the region(s): {1:1-1}-2
849s Failed to set regions
849s .. ok
849s 
849s test_bcf_sr_range:
849s 	/tmp/autopkgtest.VLO3fa/autopkgtest_tmp/test/test-bcf-sr -O vcf -o /tmp/WW8fyV4Q1_/range_test_14.out.vcf -t '1' --args /tmp/WW8fyV4Q1_/weird-chr-names.vcf.bcf
849s .. ok
849s 
849s test_bcf_sr_range:
849s 	/tmp/autopkgtest.VLO3fa/autopkgtest_tmp/test/test-bcf-sr -O vcf -o /tmp/WW8fyV4Q1_/range_test_15.out.vcf -t '1:1-2' --args /tmp/WW8fyV4Q1_/weird-chr-names.vcf.bcf
849s .. ok
849s 
849s test_bcf_sr_range:
849s 	/tmp/autopkgtest.VLO3fa/autopkgtest_tmp/test/test-bcf-sr -O vcf -o /tmp/WW8fyV4Q1_/range_test_16.out.vcf -t '1:1,1:2' --args /tmp/WW8fyV4Q1_/weird-chr-names.vcf.bcf
849s .. ok
849s 
849s test_bcf_sr_range:
849s 	/tmp/autopkgtest.VLO3fa/autopkgtest_tmp/test/test-bcf-sr -O vcf -o /tmp/WW8fyV4Q1_/range_test_17.out.vcf -t '1:1-1' --args /tmp/WW8fyV4Q1_/weird-chr-names.vcf.bcf
849s .. ok
849s 
849s test_bcf_sr_range:
849s 	/tmp/autopkgtest.VLO3fa/autopkgtest_tmp/test/test-bcf-sr -O vcf -o /tmp/WW8fyV4Q1_/range_test_18.out.vcf -t '{1:1}' --args /tmp/WW8fyV4Q1_/weird-chr-names.vcf.bcf
849s .. ok
849s 
849s test_bcf_sr_range:
849s 	/tmp/autopkgtest.VLO3fa/autopkgtest_tmp/test/test-bcf-sr -O vcf -o /tmp/WW8fyV4Q1_/range_test_19.out.vcf -t '{1:1}:1-2' --args /tmp/WW8fyV4Q1_/weird-chr-names.vcf.bcf
849s .. ok
849s 
849s test_bcf_sr_range:
849s 	/tmp/autopkgtest.VLO3fa/autopkgtest_tmp/test/test-bcf-sr -O vcf -o /tmp/WW8fyV4Q1_/range_test_20.out.vcf -t '{1:1}:1,{1:1}:2' --args /tmp/WW8fyV4Q1_/weird-chr-names.vcf.bcf
849s .. ok
849s 
849s test_bcf_sr_range:
849s 	/tmp/autopkgtest.VLO3fa/autopkgtest_tmp/test/test-bcf-sr -O vcf -o /tmp/WW8fyV4Q1_/range_test_21.out.vcf -t '{1:1}:1-1' --args /tmp/WW8fyV4Q1_/weird-chr-names.vcf.bcf
849s .. ok
849s 
849s test_bcf_sr_range:
849s 	/tmp/autopkgtest.VLO3fa/autopkgtest_tmp/test/test-bcf-sr -O vcf -o /tmp/WW8fyV4Q1_/range_test_22.out.vcf -t '{1:1-1}' --args /tmp/WW8fyV4Q1_/weird-chr-names.vcf.bcf
849s .. ok
849s 
849s test_bcf_sr_range:
849s 	/tmp/autopkgtest.VLO3fa/autopkgtest_tmp/test/test-bcf-sr -O vcf -o /tmp/WW8fyV4Q1_/range_test_23.out.vcf -t '{1:1-1}:1-2' --args /tmp/WW8fyV4Q1_/weird-chr-names.vcf.bcf
849s .. ok
849s 
849s test_bcf_sr_range:
849s 	/tmp/autopkgtest.VLO3fa/autopkgtest_tmp/test/test-bcf-sr -O vcf -o /tmp/WW8fyV4Q1_/range_test_24.out.vcf -t '{1:1-1}:1,{1:1-1}:2' --args /tmp/WW8fyV4Q1_/weird-chr-names.vcf.bcf
849s .. ok
849s 
849s test_bcf_sr_range:
849s 	/tmp/autopkgtest.VLO3fa/autopkgtest_tmp/test/test-bcf-sr -O vcf -o /tmp/WW8fyV4Q1_/range_test_25.out.vcf -t '{1:1-1}:1-1' --args /tmp/WW8fyV4Q1_/weird-chr-names.vcf.bcf
849s .. ok
849s 
849s test_bcf_sr_range:
849s 	/tmp/autopkgtest.VLO3fa/autopkgtest_tmp/test/test-bcf-sr -O vcf -o /tmp/WW8fyV4Q1_/range_test_26.out.vcf -t '{1:1-1}-2' --args /tmp/WW8fyV4Q1_/weird-chr-names.vcf.bcf (expected fail)
849s [E::_regions_init_string] Could not parse the region(s): {1:1-1}-2
849s Failed to set targets
849s .. ok
849s 
849s test_command:
849s 	/tmp/autopkgtest.VLO3fa/autopkgtest_tmp/test/test-bcf-translate -
849s .. ok
849s 
849s test_convert_padded_header:
849s 	/tmp/autopkgtest.VLO3fa/autopkgtest_tmp/test/test_view -t ce.fa -C /tmp/WW8fyV4Q1_/headernul0.bam
849s .. ok
849s 
849s test_convert_padded_header:
849s 	/tmp/autopkgtest.VLO3fa/autopkgtest_tmp/test/test_view -t ce.fa -C /tmp/WW8fyV4Q1_/headernul1.bam
849s .. ok
849s 
849s test_convert_padded_header:
849s 	/tmp/autopkgtest.VLO3fa/autopkgtest_tmp/test/test_view -t ce.fa -C /tmp/WW8fyV4Q1_/headernul678.bam
849s .. ok
849s 
849s test_rebgzip: Alternate zlib/deflate library detected
849s test_rebgzip:
849s 	/tmp/autopkgtest.VLO3fa/autopkgtest_tmp/bgzip -I /tmp/autopkgtest.VLO3fa/autopkgtest_tmp/test/bgziptest.txt.tmp.gz.gzi -c -g /tmp/autopkgtest.VLO3fa/autopkgtest_tmp/test/bgziptest.txt
849s .. ok
849s 
849s test-logging:
849s 	/tmp/autopkgtest.VLO3fa/autopkgtest_tmp/test/test-logging.pl
849s .. ok
849s 
849s test_plugin_loading:
849s 	HTS_PATH=/tmp/autopkgtest.VLO3fa/autopkgtest_tmp /tmp/autopkgtest.VLO3fa/autopkgtest_tmp/test/with-shlib.sh /tmp/autopkgtest.VLO3fa/autopkgtest_tmp/htsfile https://localhost:99999/invalid_port
849s .. ok
849s 
849s test_realn:
849s 	/tmp/autopkgtest.VLO3fa/autopkgtest_tmp/test/test_realn -f /tmp/autopkgtest.VLO3fa/autopkgtest_tmp/test/realn01.fa -i /tmp/autopkgtest.VLO3fa/autopkgtest_tmp/test/realn01.sam -o -
849s .. ok
849s 
849s test_realn:
849s 	/tmp/autopkgtest.VLO3fa/autopkgtest_tmp/test/test_realn -f /tmp/autopkgtest.VLO3fa/autopkgtest_tmp/test/realn02.fa -i /tmp/autopkgtest.VLO3fa/autopkgtest_tmp/test/realn02.sam -o -
849s .. ok
849s 
849s test_realn:
849s 	/tmp/autopkgtest.VLO3fa/autopkgtest_tmp/test/test_realn -a -f /tmp/autopkgtest.VLO3fa/autopkgtest_tmp/test/realn01.fa -i /tmp/autopkgtest.VLO3fa/autopkgtest_tmp/test/realn01.sam -o -
849s .. ok
849s 
849s test_realn:
849s 	/tmp/autopkgtest.VLO3fa/autopkgtest_tmp/test/test_realn -a -f /tmp/autopkgtest.VLO3fa/autopkgtest_tmp/test/realn02.fa -i /tmp/autopkgtest.VLO3fa/autopkgtest_tmp/test/realn02.sam -o -
849s .. ok
849s 
849s test_realn:
849s 	/tmp/autopkgtest.VLO3fa/autopkgtest_tmp/test/test_realn -e -f /tmp/autopkgtest.VLO3fa/autopkgtest_tmp/test/realn01.fa -i /tmp/autopkgtest.VLO3fa/autopkgtest_tmp/test/realn01.sam -o -
849s .. ok
849s 
849s test_realn:
849s 	/tmp/autopkgtest.VLO3fa/autopkgtest_tmp/test/test_realn -e -f /tmp/autopkgtest.VLO3fa/autopkgtest_tmp/test/realn02.fa -i /tmp/autopkgtest.VLO3fa/autopkgtest_tmp/test/realn02.sam -o -
849s .. ok
849s 
849s test_realn:
849s 	/tmp/autopkgtest.VLO3fa/autopkgtest_tmp/test/test_realn -r -f /tmp/autopkgtest.VLO3fa/autopkgtest_tmp/test/realn02.fa -i /tmp/autopkgtest.VLO3fa/autopkgtest_tmp/test/realn02-r.sam -o -
849s .. ok
849s 
849s test_realn:
849s 	/tmp/autopkgtest.VLO3fa/autopkgtest_tmp/test/test_realn -a -f /tmp/autopkgtest.VLO3fa/autopkgtest_tmp/test/realn02.fa -i /tmp/autopkgtest.VLO3fa/autopkgtest_tmp/test/realn02_exp.sam -o -
849s .. ok
849s 
849s test_realn:
849s 	/tmp/autopkgtest.VLO3fa/autopkgtest_tmp/test/test_realn -f /tmp/autopkgtest.VLO3fa/autopkgtest_tmp/test/realn02.fa -i /tmp/autopkgtest.VLO3fa/autopkgtest_tmp/test/realn02_exp-a.sam -o -
849s .. ok
849s 
849s test_realn:
849s 	/tmp/autopkgtest.VLO3fa/autopkgtest_tmp/test/test_realn -f /tmp/autopkgtest.VLO3fa/autopkgtest_tmp/test/realn03.fa -e -i /tmp/autopkgtest.VLO3fa/autopkgtest_tmp/test/realn03.sam -o -
849s .. ok
849s 
849s test-bcf_set_variant_type:
849s 	/tmp/autopkgtest.VLO3fa/autopkgtest_tmp/test/test-bcf_set_variant_type
849s .. ok
849s 
849s run_annot_tsv:
849s 	/tmp/autopkgtest.VLO3fa/autopkgtest_tmp/annot-tsv -f smpl:overlap --allow-dups -s /tmp/autopkgtest.VLO3fa/autopkgtest_tmp/test/annot-tsv/src.1.txt -t /tmp/autopkgtest.VLO3fa/autopkgtest_tmp/test/annot-tsv/dst.1.txt
849s .. ok
849s 
849s run_annot_tsv:
849s 	cat /tmp/autopkgtest.VLO3fa/autopkgtest_tmp/test/annot-tsv/dst.1.txt | /tmp/autopkgtest.VLO3fa/autopkgtest_tmp/annot-tsv -f smpl:overlap --allow-dups -s /tmp/autopkgtest.VLO3fa/autopkgtest_tmp/test/annot-tsv/src.1.txt
849s .. ok
849s 
849s run_annot_tsv:
849s 	cat /tmp/autopkgtest.VLO3fa/autopkgtest_tmp/test/annot-tsv/src.1.txt | /tmp/autopkgtest.VLO3fa/autopkgtest_tmp/annot-tsv -f smpl:overlap --allow-dups -t /tmp/autopkgtest.VLO3fa/autopkgtest_tmp/test/annot-tsv/dst.1.txt
849s .. ok
849s 
849s run_annot_tsv:
849s 	/tmp/autopkgtest.VLO3fa/autopkgtest_tmp/annot-tsv -f smpl:overlap -s /tmp/autopkgtest.VLO3fa/autopkgtest_tmp/test/annot-tsv/src.1.txt -t /tmp/autopkgtest.VLO3fa/autopkgtest_tmp/test/annot-tsv/dst.1.txt
849s .. ok
849s 
849s run_annot_tsv:
849s 	cat /tmp/autopkgtest.VLO3fa/autopkgtest_tmp/test/annot-tsv/dst.1.txt | /tmp/autopkgtest.VLO3fa/autopkgtest_tmp/annot-tsv -f smpl:overlap -s /tmp/autopkgtest.VLO3fa/autopkgtest_tmp/test/annot-tsv/src.1.txt
849s .. ok
849s 
849s run_annot_tsv:
849s 	cat /tmp/autopkgtest.VLO3fa/autopkgtest_tmp/test/annot-tsv/src.1.txt | /tmp/autopkgtest.VLO3fa/autopkgtest_tmp/annot-tsv -f smpl:overlap -t /tmp/autopkgtest.VLO3fa/autopkgtest_tmp/test/annot-tsv/dst.1.txt
849s .. ok
849s 
849s run_annot_tsv:
849s 	/tmp/autopkgtest.VLO3fa/autopkgtest_tmp/annot-tsv -f smpl:overlap -c chr,beg,end -s /tmp/autopkgtest.VLO3fa/autopkgtest_tmp/test/annot-tsv/src.1.txt -t /tmp/autopkgtest.VLO3fa/autopkgtest_tmp/test/annot-tsv/dst.1.txt
849s .. ok
849s 
849s run_annot_tsv:
849s 	cat /tmp/autopkgtest.VLO3fa/autopkgtest_tmp/test/annot-tsv/dst.1.txt | /tmp/autopkgtest.VLO3fa/autopkgtest_tmp/annot-tsv -f smpl:overlap -c chr,beg,end -s /tmp/autopkgtest.VLO3fa/autopkgtest_tmp/test/annot-tsv/src.1.txt
849s .. ok
849s 
849s run_annot_tsv:
849s 	cat /tmp/autopkgtest.VLO3fa/autopkgtest_tmp/test/annot-tsv/src.1.txt | /tmp/autopkgtest.VLO3fa/autopkgtest_tmp/annot-tsv -f smpl:overlap -c chr,beg,end -t /tmp/autopkgtest.VLO3fa/autopkgtest_tmp/test/annot-tsv/dst.1.txt
849s .. ok
849s 
849s run_annot_tsv:
849s 	/tmp/autopkgtest.VLO3fa/autopkgtest_tmp/annot-tsv -f smpl,value:overlap,value -s /tmp/autopkgtest.VLO3fa/autopkgtest_tmp/test/annot-tsv/src.1.txt -t /tmp/autopkgtest.VLO3fa/autopkgtest_tmp/test/annot-tsv/dst.1.txt
849s .. ok
849s 
849s run_annot_tsv:
849s 	cat /tmp/autopkgtest.VLO3fa/autopkgtest_tmp/test/annot-tsv/dst.1.txt | /tmp/autopkgtest.VLO3fa/autopkgtest_tmp/annot-tsv -f smpl,value:overlap,value -s /tmp/autopkgtest.VLO3fa/autopkgtest_tmp/test/annot-tsv/src.1.txt
849s .. ok
849s 
849s run_annot_tsv:
849s 	cat /tmp/autopkgtest.VLO3fa/autopkgtest_tmp/test/annot-tsv/src.1.txt | /tmp/autopkgtest.VLO3fa/autopkgtest_tmp/annot-tsv -f smpl,value:overlap,value -t /tmp/autopkgtest.VLO3fa/autopkgtest_tmp/test/annot-tsv/dst.1.txt
849s .. ok
849s 
849s run_annot_tsv:
849s 	/tmp/autopkgtest.VLO3fa/autopkgtest_tmp/annot-tsv -f smpl:overlap -O 0.5 -s /tmp/autopkgtest.VLO3fa/autopkgtest_tmp/test/annot-tsv/src.1.txt -t /tmp/autopkgtest.VLO3fa/autopkgtest_tmp/test/annot-tsv/dst.1.txt
849s .. ok
849s 
849s run_annot_tsv:
849s 	cat /tmp/autopkgtest.VLO3fa/autopkgtest_tmp/test/annot-tsv/dst.1.txt | /tmp/autopkgtest.VLO3fa/autopkgtest_tmp/annot-tsv -f smpl:overlap -O 0.5 -s /tmp/autopkgtest.VLO3fa/autopkgtest_tmp/test/annot-tsv/src.1.txt
849s .. ok
849s 
849s run_annot_tsv:
849s 	cat /tmp/autopkgtest.VLO3fa/autopkgtest_tmp/test/annot-tsv/src.1.txt | /tmp/autopkgtest.VLO3fa/autopkgtest_tmp/annot-tsv -f smpl:overlap -O 0.5 -t /tmp/autopkgtest.VLO3fa/autopkgtest_tmp/test/annot-tsv/dst.1.txt
849s .. ok
849s 
849s run_annot_tsv:
849s 	/tmp/autopkgtest.VLO3fa/autopkgtest_tmp/annot-tsv -f smpl:overlap -rO 0.5 -s /tmp/autopkgtest.VLO3fa/autopkgtest_tmp/test/annot-tsv/src.1.txt -t /tmp/autopkgtest.VLO3fa/autopkgtest_tmp/test/annot-tsv/dst.1.txt
849s .. ok
849s 
849s run_annot_tsv:
849s 	cat /tmp/autopkgtest.VLO3fa/autopkgtest_tmp/test/annot-tsv/dst.1.txt | /tmp/autopkgtest.VLO3fa/autopkgtest_tmp/annot-tsv -f smpl:overlap -rO 0.5 -s /tmp/autopkgtest.VLO3fa/autopkgtest_tmp/test/annot-tsv/src.1.txt
849s .. ok
849s 
849s run_annot_tsv:
849s 	cat /tmp/autopkgtest.VLO3fa/autopkgtest_tmp/test/annot-tsv/src.1.txt | /tmp/autopkgtest.VLO3fa/autopkgtest_tmp/annot-tsv -f smpl:overlap -rO 0.5 -t /tmp/autopkgtest.VLO3fa/autopkgtest_tmp/test/annot-tsv/dst.1.txt
849s .. ok
849s 
849s run_annot_tsv:
849s 	/tmp/autopkgtest.VLO3fa/autopkgtest_tmp/annot-tsv -f smpl:overlap --allow-dups --max-annots 2 -s /tmp/autopkgtest.VLO3fa/autopkgtest_tmp/test/annot-tsv/src.1.txt -t /tmp/autopkgtest.VLO3fa/autopkgtest_tmp/test/annot-tsv/dst.1.txt
849s .. ok
849s 
849s run_annot_tsv:
849s 	cat /tmp/autopkgtest.VLO3fa/autopkgtest_tmp/test/annot-tsv/dst.1.txt | /tmp/autopkgtest.VLO3fa/autopkgtest_tmp/annot-tsv -f smpl:overlap --allow-dups --max-annots 2 -s /tmp/autopkgtest.VLO3fa/autopkgtest_tmp/test/annot-tsv/src.1.txt
850s .. ok
850s 
850s run_annot_tsv:
850s 	cat /tmp/autopkgtest.VLO3fa/autopkgtest_tmp/test/annot-tsv/src.1.txt | /tmp/autopkgtest.VLO3fa/autopkgtest_tmp/annot-tsv -f smpl:overlap --allow-dups --max-annots 2 -t /tmp/autopkgtest.VLO3fa/autopkgtest_tmp/test/annot-tsv/dst.1.txt
850s .. ok
850s 
850s run_annot_tsv:
850s 	/tmp/autopkgtest.VLO3fa/autopkgtest_tmp/annot-tsv -c 1,2,3:1,2,3 -f 4:5 --allow-dups -s /tmp/autopkgtest.VLO3fa/autopkgtest_tmp/test/annot-tsv/src.2.txt -t /tmp/autopkgtest.VLO3fa/autopkgtest_tmp/test/annot-tsv/dst.2.txt
850s .. ok
850s 
850s run_annot_tsv:
850s 	cat /tmp/autopkgtest.VLO3fa/autopkgtest_tmp/test/annot-tsv/dst.2.txt | /tmp/autopkgtest.VLO3fa/autopkgtest_tmp/annot-tsv -c 1,2,3:1,2,3 -f 4:5 --allow-dups -s /tmp/autopkgtest.VLO3fa/autopkgtest_tmp/test/annot-tsv/src.2.txt
850s .. ok
850s 
850s run_annot_tsv:
850s 	cat /tmp/autopkgtest.VLO3fa/autopkgtest_tmp/test/annot-tsv/src.2.txt | /tmp/autopkgtest.VLO3fa/autopkgtest_tmp/annot-tsv -c 1,2,3:1,2,3 -f 4:5 --allow-dups -t /tmp/autopkgtest.VLO3fa/autopkgtest_tmp/test/annot-tsv/dst.2.txt
850s .. ok
850s 
850s run_annot_tsv:
850s 	/tmp/autopkgtest.VLO3fa/autopkgtest_tmp/annot-tsv -c 1,2,3:1,2,3 -f 4:5 -s /tmp/autopkgtest.VLO3fa/autopkgtest_tmp/test/annot-tsv/src.2.txt -t /tmp/autopkgtest.VLO3fa/autopkgtest_tmp/test/annot-tsv/dst.2.txt
850s .. ok
850s 
850s run_annot_tsv:
850s 	cat /tmp/autopkgtest.VLO3fa/autopkgtest_tmp/test/annot-tsv/dst.2.txt | /tmp/autopkgtest.VLO3fa/autopkgtest_tmp/annot-tsv -c 1,2,3:1,2,3 -f 4:5 -s /tmp/autopkgtest.VLO3fa/autopkgtest_tmp/test/annot-tsv/src.2.txt
850s .. ok
850s 
850s run_annot_tsv:
850s 	cat /tmp/autopkgtest.VLO3fa/autopkgtest_tmp/test/annot-tsv/src.2.txt | /tmp/autopkgtest.VLO3fa/autopkgtest_tmp/annot-tsv -c 1,2,3:1,2,3 -f 4:5 -t /tmp/autopkgtest.VLO3fa/autopkgtest_tmp/test/annot-tsv/dst.2.txt
850s .. ok
850s 
850s run_annot_tsv:
850s 	/tmp/autopkgtest.VLO3fa/autopkgtest_tmp/annot-tsv -c 1,2,3:1,2,3 -f 4,value:5,value -s /tmp/autopkgtest.VLO3fa/autopkgtest_tmp/test/annot-tsv/src.2.txt -t /tmp/autopkgtest.VLO3fa/autopkgtest_tmp/test/annot-tsv/dst.2.txt
850s .. ok
850s 
850s run_annot_tsv:
850s 	cat /tmp/autopkgtest.VLO3fa/autopkgtest_tmp/test/annot-tsv/dst.2.txt | /tmp/autopkgtest.VLO3fa/autopkgtest_tmp/annot-tsv -c 1,2,3:1,2,3 -f 4,value:5,value -s /tmp/autopkgtest.VLO3fa/autopkgtest_tmp/test/annot-tsv/src.2.txt
850s .. ok
850s 
850s run_annot_tsv:
850s 	cat /tmp/autopkgtest.VLO3fa/autopkgtest_tmp/test/annot-tsv/src.2.txt | /tmp/autopkgtest.VLO3fa/autopkgtest_tmp/annot-tsv -c 1,2,3:1,2,3 -f 4,value:5,value -t /tmp/autopkgtest.VLO3fa/autopkgtest_tmp/test/annot-tsv/dst.2.txt
850s .. ok
850s 
850s run_annot_tsv:
850s 	/tmp/autopkgtest.VLO3fa/autopkgtest_tmp/annot-tsv -c 1,2,3:1,2,3 -f value,4:value,5 -s /tmp/autopkgtest.VLO3fa/autopkgtest_tmp/test/annot-tsv/src.2.txt -t /tmp/autopkgtest.VLO3fa/autopkgtest_tmp/test/annot-tsv/dst.2.txt
850s .. ok
850s 
850s run_annot_tsv:
850s 	cat /tmp/autopkgtest.VLO3fa/autopkgtest_tmp/test/annot-tsv/dst.2.txt | /tmp/autopkgtest.VLO3fa/autopkgtest_tmp/annot-tsv -c 1,2,3:1,2,3 -f value,4:value,5 -s /tmp/autopkgtest.VLO3fa/autopkgtest_tmp/test/annot-tsv/src.2.txt
850s .. ok
850s 
850s run_annot_tsv:
850s 	cat /tmp/autopkgtest.VLO3fa/autopkgtest_tmp/test/annot-tsv/src.2.txt | /tmp/autopkgtest.VLO3fa/autopkgtest_tmp/annot-tsv -c 1,2,3:1,2,3 -f value,4:value,5 -t /tmp/autopkgtest.VLO3fa/autopkgtest_tmp/test/annot-tsv/dst.2.txt
850s .. ok
850s 
850s run_annot_tsv:
850s 	/tmp/autopkgtest.VLO3fa/autopkgtest_tmp/annot-tsv -c 1,2,3:1,2,3 -f value,4:value,5 -a nbp,frac -s /tmp/autopkgtest.VLO3fa/autopkgtest_tmp/test/annot-tsv/src.2.txt -t /tmp/autopkgtest.VLO3fa/autopkgtest_tmp/test/annot-tsv/dst.2.txt
850s .. ok
850s 
850s run_annot_tsv:
850s 	cat /tmp/autopkgtest.VLO3fa/autopkgtest_tmp/test/annot-tsv/dst.2.txt | /tmp/autopkgtest.VLO3fa/autopkgtest_tmp/annot-tsv -c 1,2,3:1,2,3 -f value,4:value,5 -a nbp,frac -s /tmp/autopkgtest.VLO3fa/autopkgtest_tmp/test/annot-tsv/src.2.txt
850s .. ok
850s 
850s run_annot_tsv:
850s 	cat /tmp/autopkgtest.VLO3fa/autopkgtest_tmp/test/annot-tsv/src.2.txt | /tmp/autopkgtest.VLO3fa/autopkgtest_tmp/annot-tsv -c 1,2,3:1,2,3 -f value,4:value,5 -a nbp,frac -t /tmp/autopkgtest.VLO3fa/autopkgtest_tmp/test/annot-tsv/dst.2.txt
850s .. ok
850s 
850s run_annot_tsv:
850s 	/tmp/autopkgtest.VLO3fa/autopkgtest_tmp/annot-tsv -c 1,2,3:1,2,3 -f 4:5 --allow-dups --max-annots 2 -s /tmp/autopkgtest.VLO3fa/autopkgtest_tmp/test/annot-tsv/src.2.txt -t /tmp/autopkgtest.VLO3fa/autopkgtest_tmp/test/annot-tsv/dst.2.txt
850s .. ok
850s 
850s run_annot_tsv:
850s 	cat /tmp/autopkgtest.VLO3fa/autopkgtest_tmp/test/annot-tsv/dst.2.txt | /tmp/autopkgtest.VLO3fa/autopkgtest_tmp/annot-tsv -c 1,2,3:1,2,3 -f 4:5 --allow-dups --max-annots 2 -s /tmp/autopkgtest.VLO3fa/autopkgtest_tmp/test/annot-tsv/src.2.txt
850s .. ok
850s 
850s run_annot_tsv:
850s 	cat /tmp/autopkgtest.VLO3fa/autopkgtest_tmp/test/annot-tsv/src.2.txt | /tmp/autopkgtest.VLO3fa/autopkgtest_tmp/annot-tsv -c 1,2,3:1,2,3 -f 4:5 --allow-dups --max-annots 2 -t /tmp/autopkgtest.VLO3fa/autopkgtest_tmp/test/annot-tsv/dst.2.txt
850s .. ok
850s 
850s run_annot_tsv:
850s 	/tmp/autopkgtest.VLO3fa/autopkgtest_tmp/annot-tsv -f smpl:overlap -a nbp,frac -s /tmp/autopkgtest.VLO3fa/autopkgtest_tmp/test/annot-tsv/src.3.txt -t /tmp/autopkgtest.VLO3fa/autopkgtest_tmp/test/annot-tsv/dst.3.txt
850s .. ok
850s 
850s run_annot_tsv:
850s 	cat /tmp/autopkgtest.VLO3fa/autopkgtest_tmp/test/annot-tsv/dst.3.txt | /tmp/autopkgtest.VLO3fa/autopkgtest_tmp/annot-tsv -f smpl:overlap -a nbp,frac -s /tmp/autopkgtest.VLO3fa/autopkgtest_tmp/test/annot-tsv/src.3.txt
850s .. ok
850s 
850s run_annot_tsv:
850s 	cat /tmp/autopkgtest.VLO3fa/autopkgtest_tmp/test/annot-tsv/src.3.txt | /tmp/autopkgtest.VLO3fa/autopkgtest_tmp/annot-tsv -f smpl:overlap -a nbp,frac -t /tmp/autopkgtest.VLO3fa/autopkgtest_tmp/test/annot-tsv/dst.3.txt
850s .. ok
850s 
850s run_annot_tsv:
850s 	/tmp/autopkgtest.VLO3fa/autopkgtest_tmp/annot-tsv -c 2,3,4:2,3,4 -m 1:1 -f 1:1 -a nbp,frac -s /tmp/autopkgtest.VLO3fa/autopkgtest_tmp/test/annot-tsv/src.4.txt -t /tmp/autopkgtest.VLO3fa/autopkgtest_tmp/test/annot-tsv/dst.4.txt
850s .. ok
850s 
850s run_annot_tsv:
850s 	cat /tmp/autopkgtest.VLO3fa/autopkgtest_tmp/test/annot-tsv/dst.4.txt | /tmp/autopkgtest.VLO3fa/autopkgtest_tmp/annot-tsv -c 2,3,4:2,3,4 -m 1:1 -f 1:1 -a nbp,frac -s /tmp/autopkgtest.VLO3fa/autopkgtest_tmp/test/annot-tsv/src.4.txt
850s .. ok
850s 
850s run_annot_tsv:
850s 	cat /tmp/autopkgtest.VLO3fa/autopkgtest_tmp/test/annot-tsv/src.4.txt | /tmp/autopkgtest.VLO3fa/autopkgtest_tmp/annot-tsv -c 2,3,4:2,3,4 -m 1:1 -f 1:1 -a nbp,frac -t /tmp/autopkgtest.VLO3fa/autopkgtest_tmp/test/annot-tsv/dst.4.txt
850s .. ok
850s 
850s run_annot_tsv:
850s 	/tmp/autopkgtest.VLO3fa/autopkgtest_tmp/annot-tsv -c 2,3,4:2,3,4 -a nbp,frac -s /tmp/autopkgtest.VLO3fa/autopkgtest_tmp/test/annot-tsv/src.5.txt -t /tmp/autopkgtest.VLO3fa/autopkgtest_tmp/test/annot-tsv/dst.5.txt
850s .. ok
850s 
850s run_annot_tsv:
850s 	cat /tmp/autopkgtest.VLO3fa/autopkgtest_tmp/test/annot-tsv/dst.5.txt | /tmp/autopkgtest.VLO3fa/autopkgtest_tmp/annot-tsv -c 2,3,4:2,3,4 -a nbp,frac -s /tmp/autopkgtest.VLO3fa/autopkgtest_tmp/test/annot-tsv/src.5.txt
850s .. ok
850s 
850s run_annot_tsv:
850s 	cat /tmp/autopkgtest.VLO3fa/autopkgtest_tmp/test/annot-tsv/src.5.txt | /tmp/autopkgtest.VLO3fa/autopkgtest_tmp/annot-tsv -c 2,3,4:2,3,4 -a nbp,frac -t /tmp/autopkgtest.VLO3fa/autopkgtest_tmp/test/annot-tsv/dst.5.txt
850s .. ok
850s 
850s run_annot_tsv:
850s 	/tmp/autopkgtest.VLO3fa/autopkgtest_tmp/annot-tsv -c 1,2,2:1,2,2 -a nbp -s /tmp/autopkgtest.VLO3fa/autopkgtest_tmp/test/annot-tsv/src.6.txt -t /tmp/autopkgtest.VLO3fa/autopkgtest_tmp/test/annot-tsv/dst.6.txt
850s .. ok
850s 
850s run_annot_tsv:
850s 	cat /tmp/autopkgtest.VLO3fa/autopkgtest_tmp/test/annot-tsv/dst.6.txt | /tmp/autopkgtest.VLO3fa/autopkgtest_tmp/annot-tsv -c 1,2,2:1,2,2 -a nbp -s /tmp/autopkgtest.VLO3fa/autopkgtest_tmp/test/annot-tsv/src.6.txt
850s .. ok
850s 
850s run_annot_tsv:
850s 	cat /tmp/autopkgtest.VLO3fa/autopkgtest_tmp/test/annot-tsv/src.6.txt | /tmp/autopkgtest.VLO3fa/autopkgtest_tmp/annot-tsv -c 1,2,2:1,2,2 -a nbp -t /tmp/autopkgtest.VLO3fa/autopkgtest_tmp/test/annot-tsv/dst.6.txt
850s .. ok
850s 
850s run_annot_tsv:
850s 	/tmp/autopkgtest.VLO3fa/autopkgtest_tmp/annot-tsv -c 1,2,2:1,2,2 -f overlap -H -s /tmp/autopkgtest.VLO3fa/autopkgtest_tmp/test/annot-tsv/src.7.txt -t /tmp/autopkgtest.VLO3fa/autopkgtest_tmp/test/annot-tsv/dst.7.txt
850s .. ok
850s 
850s run_annot_tsv:
850s 	cat /tmp/autopkgtest.VLO3fa/autopkgtest_tmp/test/annot-tsv/dst.7.txt | /tmp/autopkgtest.VLO3fa/autopkgtest_tmp/annot-tsv -c 1,2,2:1,2,2 -f overlap -H -s /tmp/autopkgtest.VLO3fa/autopkgtest_tmp/test/annot-tsv/src.7.txt
850s .. ok
850s 
850s run_annot_tsv:
850s 	cat /tmp/autopkgtest.VLO3fa/autopkgtest_tmp/test/annot-tsv/src.7.txt | /tmp/autopkgtest.VLO3fa/autopkgtest_tmp/annot-tsv -c 1,2,2:1,2,2 -f overlap -H -t /tmp/autopkgtest.VLO3fa/autopkgtest_tmp/test/annot-tsv/dst.7.txt
850s .. ok
850s 
850s run_annot_tsv:
850s 	/tmp/autopkgtest.VLO3fa/autopkgtest_tmp/annot-tsv -c chr,beg,end:chr,start,end -m sample -f is_tp -s /tmp/autopkgtest.VLO3fa/autopkgtest_tmp/test/annot-tsv/src.8.txt -t /tmp/autopkgtest.VLO3fa/autopkgtest_tmp/test/annot-tsv/dst.8.txt
850s .. ok
850s 
850s run_annot_tsv:
850s 	cat /tmp/autopkgtest.VLO3fa/autopkgtest_tmp/test/annot-tsv/dst.8.txt | /tmp/autopkgtest.VLO3fa/autopkgtest_tmp/annot-tsv -c chr,beg,end:chr,start,end -m sample -f is_tp -s /tmp/autopkgtest.VLO3fa/autopkgtest_tmp/test/annot-tsv/src.8.txt
850s .. ok
850s 
850s run_annot_tsv:
850s 	cat /tmp/autopkgtest.VLO3fa/autopkgtest_tmp/test/annot-tsv/src.8.txt | /tmp/autopkgtest.VLO3fa/autopkgtest_tmp/annot-tsv -c chr,beg,end:chr,start,end -m sample -f is_tp -t /tmp/autopkgtest.VLO3fa/autopkgtest_tmp/test/annot-tsv/dst.8.txt
850s .. ok
850s 
850s run_annot_tsv:
850s 	/tmp/autopkgtest.VLO3fa/autopkgtest_tmp/annot-tsv -c 1,2,3:chr,beg,end -a nbp,frac,cnt -s /tmp/autopkgtest.VLO3fa/autopkgtest_tmp/test/annot-tsv/src.9.txt -t /tmp/autopkgtest.VLO3fa/autopkgtest_tmp/test/annot-tsv/dst.9.txt
850s .. ok
850s 
850s run_annot_tsv:
850s 	cat /tmp/autopkgtest.VLO3fa/autopkgtest_tmp/test/annot-tsv/dst.9.txt | /tmp/autopkgtest.VLO3fa/autopkgtest_tmp/annot-tsv -c 1,2,3:chr,beg,end -a nbp,frac,cnt -s /tmp/autopkgtest.VLO3fa/autopkgtest_tmp/test/annot-tsv/src.9.txt
850s .. ok
850s 
850s run_annot_tsv:
850s 	cat /tmp/autopkgtest.VLO3fa/autopkgtest_tmp/test/annot-tsv/src.9.txt | /tmp/autopkgtest.VLO3fa/autopkgtest_tmp/annot-tsv -c 1,2,3:chr,beg,end -a nbp,frac,cnt -t /tmp/autopkgtest.VLO3fa/autopkgtest_tmp/test/annot-tsv/dst.9.txt
850s .. ok
850s 
850s run_annot_tsv:
850s 	/tmp/autopkgtest.VLO3fa/autopkgtest_tmp/annot-tsv -f smpl -s /tmp/autopkgtest.VLO3fa/autopkgtest_tmp/test/annot-tsv/src.10.txt -t /tmp/autopkgtest.VLO3fa/autopkgtest_tmp/test/annot-tsv/dst.10.txt
850s .. ok
850s 
850s run_annot_tsv:
850s 	cat /tmp/autopkgtest.VLO3fa/autopkgtest_tmp/test/annot-tsv/dst.10.txt | /tmp/autopkgtest.VLO3fa/autopkgtest_tmp/annot-tsv -f smpl -s /tmp/autopkgtest.VLO3fa/autopkgtest_tmp/test/annot-tsv/src.10.txt
850s .. ok
850s 
850s run_annot_tsv:
850s 	cat /tmp/autopkgtest.VLO3fa/autopkgtest_tmp/test/annot-tsv/src.10.txt | /tmp/autopkgtest.VLO3fa/autopkgtest_tmp/annot-tsv -f smpl -t /tmp/autopkgtest.VLO3fa/autopkgtest_tmp/test/annot-tsv/dst.10.txt
850s .. ok
850s 
850s run_annot_tsv:
850s 	/tmp/autopkgtest.VLO3fa/autopkgtest_tmp/annot-tsv  -s /tmp/autopkgtest.VLO3fa/autopkgtest_tmp/test/annot-tsv/src.10.txt -t /tmp/autopkgtest.VLO3fa/autopkgtest_tmp/test/annot-tsv/dst.10.txt
850s .. ok
850s 
850s run_annot_tsv:
850s 	cat /tmp/autopkgtest.VLO3fa/autopkgtest_tmp/test/annot-tsv/dst.10.txt | /tmp/autopkgtest.VLO3fa/autopkgtest_tmp/annot-tsv  -s /tmp/autopkgtest.VLO3fa/autopkgtest_tmp/test/annot-tsv/src.10.txt
850s .. ok
850s 
850s run_annot_tsv:
850s 	cat /tmp/autopkgtest.VLO3fa/autopkgtest_tmp/test/annot-tsv/src.10.txt | /tmp/autopkgtest.VLO3fa/autopkgtest_tmp/annot-tsv  -t /tmp/autopkgtest.VLO3fa/autopkgtest_tmp/test/annot-tsv/dst.10.txt
850s .. ok
850s 
850s run_annot_tsv:
850s 	/tmp/autopkgtest.VLO3fa/autopkgtest_tmp/annot-tsv -x -s /tmp/autopkgtest.VLO3fa/autopkgtest_tmp/test/annot-tsv/src.10.txt -t /tmp/autopkgtest.VLO3fa/autopkgtest_tmp/test/annot-tsv/dst.10.txt
850s .. ok
850s 
850s run_annot_tsv:
850s 	cat /tmp/autopkgtest.VLO3fa/autopkgtest_tmp/test/annot-tsv/dst.10.txt | /tmp/autopkgtest.VLO3fa/autopkgtest_tmp/annot-tsv -x -s /tmp/autopkgtest.VLO3fa/autopkgtest_tmp/test/annot-tsv/src.10.txt
850s .. ok
850s 
850s run_annot_tsv:
850s 	cat /tmp/autopkgtest.VLO3fa/autopkgtest_tmp/test/annot-tsv/src.10.txt | /tmp/autopkgtest.VLO3fa/autopkgtest_tmp/annot-tsv -x -t /tmp/autopkgtest.VLO3fa/autopkgtest_tmp/test/annot-tsv/dst.10.txt
850s .. ok
850s 
850s run_annot_tsv:
850s 	/tmp/autopkgtest.VLO3fa/autopkgtest_tmp/annot-tsv -m smpl -f smpl -s /tmp/autopkgtest.VLO3fa/autopkgtest_tmp/test/annot-tsv/src.10.txt -t /tmp/autopkgtest.VLO3fa/autopkgtest_tmp/test/annot-tsv/dst.10.txt
850s .. ok
850s 
850s run_annot_tsv:
850s 	cat /tmp/autopkgtest.VLO3fa/autopkgtest_tmp/test/annot-tsv/dst.10.txt | /tmp/autopkgtest.VLO3fa/autopkgtest_tmp/annot-tsv -m smpl -f smpl -s /tmp/autopkgtest.VLO3fa/autopkgtest_tmp/test/annot-tsv/src.10.txt
850s .. ok
850s 
850s run_annot_tsv:
850s 	cat /tmp/autopkgtest.VLO3fa/autopkgtest_tmp/test/annot-tsv/src.10.txt | /tmp/autopkgtest.VLO3fa/autopkgtest_tmp/annot-tsv -m smpl -f smpl -t /tmp/autopkgtest.VLO3fa/autopkgtest_tmp/test/annot-tsv/dst.10.txt
850s .. ok
850s 
850s run_annot_tsv:
850s 	/tmp/autopkgtest.VLO3fa/autopkgtest_tmp/annot-tsv -m smpl  -s /tmp/autopkgtest.VLO3fa/autopkgtest_tmp/test/annot-tsv/src.10.txt -t /tmp/autopkgtest.VLO3fa/autopkgtest_tmp/test/annot-tsv/dst.10.txt
850s .. ok
850s 
850s run_annot_tsv:
850s 	cat /tmp/autopkgtest.VLO3fa/autopkgtest_tmp/test/annot-tsv/dst.10.txt | /tmp/autopkgtest.VLO3fa/autopkgtest_tmp/annot-tsv -m smpl  -s /tmp/autopkgtest.VLO3fa/autopkgtest_tmp/test/annot-tsv/src.10.txt
850s .. ok
850s 
850s run_annot_tsv:
850s 	cat /tmp/autopkgtest.VLO3fa/autopkgtest_tmp/test/annot-tsv/src.10.txt | /tmp/autopkgtest.VLO3fa/autopkgtest_tmp/annot-tsv -m smpl  -t /tmp/autopkgtest.VLO3fa/autopkgtest_tmp/test/annot-tsv/dst.10.txt
850s .. ok
850s 
850s run_annot_tsv:
850s 	/tmp/autopkgtest.VLO3fa/autopkgtest_tmp/annot-tsv -m smpl -x -s /tmp/autopkgtest.VLO3fa/autopkgtest_tmp/test/annot-tsv/src.10.txt -t /tmp/autopkgtest.VLO3fa/autopkgtest_tmp/test/annot-tsv/dst.10.txt
850s .. ok
850s 
850s run_annot_tsv:
850s 	cat /tmp/autopkgtest.VLO3fa/autopkgtest_tmp/test/annot-tsv/dst.10.txt | /tmp/autopkgtest.VLO3fa/autopkgtest_tmp/annot-tsv -m smpl -x -s /tmp/autopkgtest.VLO3fa/autopkgtest_tmp/test/annot-tsv/src.10.txt
850s .. ok
850s 
850s run_annot_tsv:
850s 	cat /tmp/autopkgtest.VLO3fa/autopkgtest_tmp/test/annot-tsv/src.10.txt | /tmp/autopkgtest.VLO3fa/autopkgtest_tmp/annot-tsv -m smpl -x -t /tmp/autopkgtest.VLO3fa/autopkgtest_tmp/test/annot-tsv/dst.10.txt
850s .. ok
850s 
850s 
850s Number of tests:
850s     total   .. 293
850s     passed  .. 293
850s     failed  .. 0
850s 
850s + echo PASS
850s PASS
850s autopkgtest [21:33:14]: test run-unit-test: -----------------------]
851s autopkgtest [21:33:15]: test run-unit-test:  - - - - - - - - - - results - - - - - - - - - -
851s run-unit-test        PASS
851s autopkgtest [21:33:15]: @@@@@@@@@@@@@@@@@@@@ summary
851s run-unit-test        PASS