0s autopkgtest [02:12:46]: starting date and time: 2024-11-02 02:12:46+0000 0s autopkgtest [02:12:46]: git checkout: 6f3be7a8 Fix armhf LXD image generation for plucky 0s autopkgtest [02:12:46]: host juju-7f2275-prod-proposed-migration-environment-2; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.8zkabt8u/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:rhino --apt-upgrade htsjdk --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=rhino/1.7.15-1 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest-ppc64el --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-2@bos03-ppc64el-10.secgroup --name adt-plucky-ppc64el-htsjdk-20241102-021245-juju-7f2275-prod-proposed-migration-environment-2-18db895f-f2de-481e-bd42-85b3052457bc --image adt/ubuntu-plucky-ppc64el-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-2 --net-id=net_prod-proposed-migration-ppc64el -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,keyserver.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/ 133s autopkgtest [02:14:59]: testbed dpkg architecture: ppc64el 133s autopkgtest [02:14:59]: testbed apt version: 2.9.8 133s autopkgtest [02:14:59]: @@@@@@@@@@@@@@@@@@@@ test bed setup 134s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease [73.9 kB] 134s Get:2 http://ftpmaster.internal/ubuntu plucky-proposed/main Sources [178 kB] 135s Get:3 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse Sources [41.0 kB] 135s Get:4 http://ftpmaster.internal/ubuntu plucky-proposed/universe Sources [2614 kB] 135s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/restricted Sources [7016 B] 135s Get:6 http://ftpmaster.internal/ubuntu plucky-proposed/main ppc64el Packages [214 kB] 135s Get:7 http://ftpmaster.internal/ubuntu plucky-proposed/universe ppc64el Packages [1794 kB] 135s Get:8 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse ppc64el Packages [22.3 kB] 136s Fetched 4944 kB in 2s (3067 kB/s) 136s Reading package lists... 138s Reading package lists... 139s Building dependency tree... 139s Reading state information... 139s Calculating upgrade... 139s The following packages will be upgraded: 139s libblockdev-crypto3 libblockdev-fs3 libblockdev-loop3 libblockdev-mdraid3 139s libblockdev-nvme3 libblockdev-part3 libblockdev-swap3 libblockdev-utils3 139s libblockdev3 libevdev2 libftdi1-2 libinih1 libpipeline1 nano 139s python3-lazr.uri 140s 15 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 140s Need to get 664 kB of archives. 140s After this operation, 151 kB of additional disk space will be used. 140s Get:1 http://ftpmaster.internal/ubuntu plucky/main ppc64el libevdev2 ppc64el 1.13.3+dfsg-1 [39.2 kB] 140s Get:2 http://ftpmaster.internal/ubuntu plucky/main ppc64el libpipeline1 ppc64el 1.5.8-1 [34.4 kB] 140s Get:3 http://ftpmaster.internal/ubuntu plucky/main ppc64el nano ppc64el 8.2-1 [329 kB] 140s Get:4 http://ftpmaster.internal/ubuntu plucky/main ppc64el libblockdev-utils3 ppc64el 3.2.0-2 [20.6 kB] 140s Get:5 http://ftpmaster.internal/ubuntu plucky/main ppc64el libblockdev-crypto3 ppc64el 3.2.0-2 [24.8 kB] 140s Get:6 http://ftpmaster.internal/ubuntu plucky/main ppc64el libblockdev-fs3 ppc64el 3.2.0-2 [40.6 kB] 140s Get:7 http://ftpmaster.internal/ubuntu plucky/main ppc64el libblockdev-loop3 ppc64el 3.2.0-2 [7712 B] 140s Get:8 http://ftpmaster.internal/ubuntu plucky/main ppc64el libblockdev-mdraid3 ppc64el 3.2.0-2 [14.2 kB] 140s Get:9 http://ftpmaster.internal/ubuntu plucky/main ppc64el libblockdev-nvme3 ppc64el 3.2.0-2 [20.2 kB] 140s Get:10 http://ftpmaster.internal/ubuntu plucky/main ppc64el libblockdev-part3 ppc64el 3.2.0-2 [17.5 kB] 140s Get:11 http://ftpmaster.internal/ubuntu plucky/main ppc64el libblockdev-swap3 ppc64el 3.2.0-2 [8540 B] 140s Get:12 http://ftpmaster.internal/ubuntu plucky/main ppc64el libblockdev3 ppc64el 3.2.0-2 [54.1 kB] 140s Get:13 http://ftpmaster.internal/ubuntu plucky/main ppc64el libftdi1-2 ppc64el 1.5-7 [32.1 kB] 140s Get:14 http://ftpmaster.internal/ubuntu plucky/main ppc64el libinih1 ppc64el 58-1ubuntu1 [7816 B] 140s Get:15 http://ftpmaster.internal/ubuntu plucky/main ppc64el python3-lazr.uri all 1.0.6-4 [13.6 kB] 140s Fetched 664 kB in 1s (1033 kB/s) 141s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 73549 files and directories currently installed.) 141s Preparing to unpack .../00-libevdev2_1.13.3+dfsg-1_ppc64el.deb ... 141s Unpacking libevdev2:ppc64el (1.13.3+dfsg-1) over (1.13.2+dfsg-1) ... 141s Preparing to unpack .../01-libpipeline1_1.5.8-1_ppc64el.deb ... 141s Unpacking libpipeline1:ppc64el (1.5.8-1) over (1.5.7-2) ... 141s Preparing to unpack .../02-nano_8.2-1_ppc64el.deb ... 141s Unpacking nano (8.2-1) over (8.1-1) ... 141s Preparing to unpack .../03-libblockdev-utils3_3.2.0-2_ppc64el.deb ... 141s Unpacking libblockdev-utils3:ppc64el (3.2.0-2) over (3.1.1-2) ... 141s Preparing to unpack .../04-libblockdev-crypto3_3.2.0-2_ppc64el.deb ... 141s Unpacking libblockdev-crypto3:ppc64el (3.2.0-2) over (3.1.1-2) ... 141s Preparing to unpack .../05-libblockdev-fs3_3.2.0-2_ppc64el.deb ... 141s Unpacking libblockdev-fs3:ppc64el (3.2.0-2) over (3.1.1-2) ... 141s Preparing to unpack .../06-libblockdev-loop3_3.2.0-2_ppc64el.deb ... 141s Unpacking libblockdev-loop3:ppc64el (3.2.0-2) over (3.1.1-2) ... 141s Preparing to unpack .../07-libblockdev-mdraid3_3.2.0-2_ppc64el.deb ... 141s Unpacking libblockdev-mdraid3:ppc64el (3.2.0-2) over (3.1.1-2) ... 141s Preparing to unpack .../08-libblockdev-nvme3_3.2.0-2_ppc64el.deb ... 141s Unpacking libblockdev-nvme3:ppc64el (3.2.0-2) over (3.1.1-2) ... 141s Preparing to unpack .../09-libblockdev-part3_3.2.0-2_ppc64el.deb ... 141s Unpacking libblockdev-part3:ppc64el (3.2.0-2) over (3.1.1-2) ... 141s Preparing to unpack .../10-libblockdev-swap3_3.2.0-2_ppc64el.deb ... 141s Unpacking libblockdev-swap3:ppc64el (3.2.0-2) over (3.1.1-2) ... 141s Preparing to unpack .../11-libblockdev3_3.2.0-2_ppc64el.deb ... 141s Unpacking libblockdev3:ppc64el (3.2.0-2) over (3.1.1-2) ... 141s Preparing to unpack .../12-libftdi1-2_1.5-7_ppc64el.deb ... 141s Unpacking libftdi1-2:ppc64el (1.5-7) over (1.5-6build5) ... 141s Preparing to unpack .../13-libinih1_58-1ubuntu1_ppc64el.deb ... 141s Unpacking libinih1:ppc64el (58-1ubuntu1) over (55-1ubuntu2) ... 142s Preparing to unpack .../14-python3-lazr.uri_1.0.6-4_all.deb ... 142s Unpacking python3-lazr.uri (1.0.6-4) over (1.0.6-3) ... 142s Setting up libpipeline1:ppc64el (1.5.8-1) ... 142s Setting up libinih1:ppc64el (58-1ubuntu1) ... 142s Setting up python3-lazr.uri (1.0.6-4) ... 142s Setting up libftdi1-2:ppc64el (1.5-7) ... 142s Setting up libblockdev-utils3:ppc64el (3.2.0-2) ... 142s Setting up libblockdev-nvme3:ppc64el (3.2.0-2) ... 142s Setting up nano (8.2-1) ... 142s Setting up libblockdev-fs3:ppc64el (3.2.0-2) ... 142s Setting up libevdev2:ppc64el (1.13.3+dfsg-1) ... 142s Setting up libblockdev-mdraid3:ppc64el (3.2.0-2) ... 142s Setting up libblockdev-crypto3:ppc64el (3.2.0-2) ... 142s Setting up libblockdev-swap3:ppc64el (3.2.0-2) ... 142s Setting up libblockdev-loop3:ppc64el (3.2.0-2) ... 142s Setting up libblockdev3:ppc64el (3.2.0-2) ... 142s Installing new version of config file /etc/libblockdev/3/conf.d/00-default.cfg ... 142s Setting up libblockdev-part3:ppc64el (3.2.0-2) ... 142s Processing triggers for libc-bin (2.40-1ubuntu3) ... 142s Processing triggers for man-db (2.12.1-3) ... 144s Processing triggers for install-info (7.1.1-1) ... 144s Reading package lists... 144s Building dependency tree... 144s Reading state information... 145s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 145s Hit:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease 145s Hit:2 http://ftpmaster.internal/ubuntu plucky InRelease 145s Hit:3 http://ftpmaster.internal/ubuntu plucky-updates InRelease 145s Hit:4 http://ftpmaster.internal/ubuntu plucky-security InRelease 146s Reading package lists... 146s Reading package lists... 147s Building dependency tree... 147s Reading state information... 147s Calculating upgrade... 147s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 147s Reading package lists... 147s Building dependency tree... 147s Reading state information... 148s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 150s autopkgtest [02:15:16]: testbed running kernel: Linux 6.11.0-8-generic #8-Ubuntu SMP Mon Sep 16 13:49:23 UTC 2024 151s autopkgtest [02:15:17]: @@@@@@@@@@@@@@@@@@@@ apt-source htsjdk 156s Get:1 http://ftpmaster.internal/ubuntu plucky/universe htsjdk 4.1.0+dfsg-2 (dsc) [2649 B] 156s Get:2 http://ftpmaster.internal/ubuntu plucky/universe htsjdk 4.1.0+dfsg-2 (tar) [46.9 MB] 156s Get:3 http://ftpmaster.internal/ubuntu plucky/universe htsjdk 4.1.0+dfsg-2 (diff) [39.3 kB] 156s gpgv: Signature made Wed May 15 21:27:25 2024 UTC 156s gpgv: using RSA key 33CB284313E90BD27DCB4523600316A6DC277476 156s gpgv: Can't check signature: No public key 156s dpkg-source: warning: cannot verify inline signature for ./htsjdk_4.1.0+dfsg-2.dsc: no acceptable signature found 158s autopkgtest [02:15:24]: testing package htsjdk version 4.1.0+dfsg-2 158s beagle-run-sample-analysis SKIP Test lists explicitly supported architectures, but the current architecture ppc64el isn't listed. 158s chromhmm-run-sample-analysis SKIP Test lists explicitly supported architectures, but the current architecture ppc64el isn't listed. 158s drop-seq-run-unit-test SKIP Test lists explicitly supported architectures, but the current architecture ppc64el isn't listed. 158s fastqc-run-unit-test SKIP Test lists explicitly supported architectures, but the current architecture ppc64el isn't listed. 159s jalview-run-unit-test SKIP Test lists explicitly supported architectures, but the current architecture ppc64el isn't listed. 159s command1 SKIP Test lists explicitly supported architectures, but the current architecture ppc64el isn't listed. 159s picard-tools-run-unit-test SKIP Test lists explicitly supported architectures, but the current architecture ppc64el isn't listed. 159s pilon-run-unit-test SKIP Test lists explicitly supported architectures, but the current architecture ppc64el isn't listed. 159s autopkgtest [02:15:25]: build not needed 163s beagle-run-sample-analysis SKIP Test lists explicitly supported architectures, but the current architecture ppc64el isn't listed. 163s chromhmm-run-sample-analysis SKIP Test lists explicitly supported architectures, but the current architecture ppc64el isn't listed. 163s drop-seq-run-unit-test SKIP Test lists explicitly supported architectures, but the current architecture ppc64el isn't listed. 163s fastqc-run-unit-test SKIP Test lists explicitly supported architectures, but the current architecture ppc64el isn't listed. 163s jalview-run-unit-test SKIP Test lists explicitly supported architectures, but the current architecture ppc64el isn't listed. 163s command1 SKIP Test lists explicitly supported architectures, but the current architecture ppc64el isn't listed. 163s picard-tools-run-unit-test SKIP Test lists explicitly supported architectures, but the current architecture ppc64el isn't listed. 163s autopkgtest [02:15:29]: @@@@@@@@@@@@@@@@@@@@ summary 163s beagle-run-sample-analysis SKIP Test lists explicitly supported architectures, but the current architecture ppc64el isn't listed. 163s chromhmm-run-sample-analysis SKIP Test lists explicitly supported architectures, but the current architecture ppc64el isn't listed. 163s drop-seq-run-unit-test SKIP Test lists explicitly supported architectures, but the current architecture ppc64el isn't listed. 163s fastqc-run-unit-test SKIP Test lists explicitly supported architectures, but the current architecture ppc64el isn't listed. 163s jalview-run-unit-test SKIP Test lists explicitly supported architectures, but the current architecture ppc64el isn't listed. 163s command1 SKIP Test lists explicitly supported architectures, but the current architecture ppc64el isn't listed. 163s picard-tools-run-unit-test SKIP Test lists explicitly supported architectures, but the current architecture ppc64el isn't listed. 163s pilon-run-unit-test SKIP Test lists explicitly supported architectures, but the current architecture ppc64el isn't listed. 163s beagle-run-sample-analysis SKIP Test lists explicitly supported architectures, but the current architecture ppc64el isn't listed. 163s chromhmm-run-sample-analysis SKIP Test lists explicitly supported architectures, but the current architecture ppc64el isn't listed. 163s drop-seq-run-unit-test SKIP Test lists explicitly supported architectures, but the current architecture ppc64el isn't listed. 163s fastqc-run-unit-test SKIP Test lists explicitly supported architectures, but the current architecture ppc64el isn't listed. 163s jalview-run-unit-test SKIP Test lists explicitly supported architectures, but the current architecture ppc64el isn't listed. 163s command1 SKIP Test lists explicitly supported architectures, but the current architecture ppc64el isn't listed. 163s picard-tools-run-unit-test SKIP Test lists explicitly supported architectures, but the current architecture ppc64el isn't listed. 163s pilon-run-unit-test SKIP Test lists explicitly supported architectures, but the current architecture ppc64el isn't listed. 163s pilon-run-unit-test SKIP Test lists explicitly supported architectures, but the current architecture ppc64el isn't listed. 168s nova [W] Using flock in prodstack6-ppc64el 168s Creating nova instance adt-plucky-ppc64el-htsjdk-20241102-021245-juju-7f2275-prod-proposed-migration-environment-2-18db895f-f2de-481e-bd42-85b3052457bc from image adt/ubuntu-plucky-ppc64el-server-20241101.img (UUID d479b61b-bfab-4ebe-8e06-591f77402620)...